Query 001160
Match_columns 1134
No_of_seqs 891 out of 5167
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 17:27:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 3.9E-69 8.5E-74 535.9 36.2 490 5-663 17-514 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 5.3E-63 1.1E-67 476.0 32.8 488 5-660 7-507 (508)
3 KOG0319 WD40-repeat-containing 100.0 7.4E-58 1.6E-62 489.4 48.0 576 352-1049 25-621 (775)
4 KOG0319 WD40-repeat-containing 100.0 6.2E-54 1.3E-58 459.4 44.3 570 414-1101 25-620 (775)
5 KOG0318 WD40 repeat stress pro 100.0 2.8E-50 6.2E-55 414.2 61.8 569 351-1100 23-602 (603)
6 KOG0291 WD40-repeat-containing 100.0 9.9E-50 2.2E-54 426.8 61.8 568 343-1101 52-710 (893)
7 KOG0318 WD40 repeat stress pro 100.0 4.1E-50 8.8E-55 413.1 56.1 532 343-1002 56-601 (603)
8 KOG0291 WD40-repeat-containing 100.0 1.6E-48 3.4E-53 417.6 56.5 584 313-1053 56-715 (893)
9 KOG0306 WD40-repeat-containing 100.0 7.7E-49 1.7E-53 419.8 50.1 574 356-1103 32-667 (888)
10 KOG0271 Notchless-like WD40 re 100.0 1E-50 2.3E-55 400.7 30.6 367 404-952 111-479 (480)
11 KOG0306 WD40-repeat-containing 100.0 2.2E-48 4.7E-53 416.3 49.7 498 345-1003 64-664 (888)
12 KOG0271 Notchless-like WD40 re 100.0 1E-49 2.2E-54 393.7 28.7 286 345-664 114-441 (480)
13 KOG1408 WD40 repeat protein [F 100.0 3.7E-44 8E-49 380.2 39.5 625 351-1101 42-714 (1080)
14 KOG0263 Transcription initiati 100.0 7.3E-42 1.6E-46 372.0 39.0 562 3-620 19-651 (707)
15 KOG0273 Beta-transducin family 100.0 1.9E-41 4.1E-46 344.9 34.6 305 336-664 168-484 (524)
16 KOG1539 WD repeat protein [Gen 100.0 1.6E-37 3.6E-42 337.6 55.9 583 352-1099 39-647 (910)
17 KOG1408 WD40 repeat protein [F 100.0 5.6E-39 1.2E-43 340.9 41.9 569 345-1049 77-715 (1080)
18 KOG0272 U4/U6 small nuclear ri 100.0 2.4E-41 5.2E-46 339.8 22.6 282 345-660 174-458 (459)
19 KOG0272 U4/U6 small nuclear ri 100.0 1.4E-40 3.1E-45 334.2 23.9 285 406-800 173-458 (459)
20 KOG0286 G-protein beta subunit 100.0 1.1E-38 2.4E-43 305.4 33.5 291 340-660 48-343 (343)
21 KOG1063 RNA polymerase II elon 100.0 4.4E-37 9.6E-42 327.5 46.9 593 328-1047 35-763 (764)
22 KOG0276 Vesicle coat complex C 100.0 4.6E-37 9.9E-42 322.7 44.0 475 345-1002 12-489 (794)
23 KOG0279 G protein beta subunit 100.0 3.4E-38 7.4E-43 300.4 32.2 297 339-662 7-313 (315)
24 KOG1539 WD repeat protein [Gen 100.0 7.7E-36 1.7E-40 324.6 53.4 559 338-1047 67-648 (910)
25 KOG1063 RNA polymerase II elon 100.0 2.1E-36 4.5E-41 322.4 47.0 593 352-1100 20-763 (764)
26 KOG0292 Vesicle coat complex C 100.0 1.5E-36 3.3E-41 330.5 43.6 585 346-1106 9-600 (1202)
27 KOG0286 G-protein beta subunit 100.0 2.5E-37 5.5E-42 296.1 31.1 249 403-664 50-305 (343)
28 KOG0315 G-protein beta subunit 100.0 1.6E-36 3.4E-41 283.6 28.8 285 358-676 9-301 (311)
29 KOG2106 Uncharacterized conser 100.0 4E-34 8.7E-39 293.4 47.6 539 351-1099 70-625 (626)
30 KOG0276 Vesicle coat complex C 100.0 1.4E-34 3E-39 304.1 43.7 464 404-1046 9-489 (794)
31 KOG0279 G protein beta subunit 100.0 1.3E-35 2.9E-40 282.8 31.9 296 769-1101 12-314 (315)
32 KOG0295 WD40 repeat-containing 100.0 3.9E-36 8.5E-41 296.6 27.1 308 321-661 83-405 (406)
33 KOG0315 G-protein beta subunit 100.0 3.5E-35 7.7E-40 274.6 31.9 295 512-933 11-309 (311)
34 KOG0296 Angio-associated migra 100.0 6E-35 1.3E-39 288.7 35.1 339 448-954 59-398 (399)
35 KOG0285 Pleiotropic regulator 100.0 4.7E-35 1E-39 287.5 26.2 295 335-663 139-440 (460)
36 KOG0284 Polyadenylation factor 100.0 1.2E-35 2.7E-40 297.2 20.8 284 345-662 95-380 (464)
37 KOG0296 Angio-associated migra 100.0 1.4E-33 3.1E-38 278.9 34.5 329 404-912 60-398 (399)
38 KOG0273 Beta-transducin family 100.0 6.2E-34 1.4E-38 290.3 31.2 281 345-662 234-523 (524)
39 KOG2048 WD40 repeat protein [G 100.0 2.8E-30 6E-35 275.9 54.7 549 407-1100 24-601 (691)
40 KOG0292 Vesicle coat complex C 100.0 8.9E-32 1.9E-36 293.5 44.2 476 404-1056 5-488 (1202)
41 KOG0645 WD40 repeat protein [G 100.0 1.1E-32 2.3E-37 261.8 32.2 292 339-662 6-311 (312)
42 KOG0265 U5 snRNP-specific prot 100.0 2.2E-33 4.8E-38 270.4 26.9 285 344-660 45-336 (338)
43 KOG2106 Uncharacterized conser 100.0 1.5E-31 3.3E-36 274.6 42.0 486 304-953 96-625 (626)
44 KOG0295 WD40 repeat-containing 100.0 3E-33 6.5E-38 276.4 26.8 305 488-953 99-405 (406)
45 KOG0265 U5 snRNP-specific prot 100.0 5.2E-33 1.1E-37 267.9 27.3 252 402-664 41-298 (338)
46 KOG0285 Pleiotropic regulator 100.0 2.1E-33 4.5E-38 276.0 25.0 246 403-664 146-391 (460)
47 KOG0266 WD40 repeat-containing 100.0 3.2E-32 6.9E-37 310.8 33.2 286 345-662 158-454 (456)
48 KOG0263 Transcription initiati 100.0 5.1E-33 1.1E-37 303.3 23.6 247 407-664 377-651 (707)
49 KOG2048 WD40 repeat protein [G 100.0 4.6E-29 9.9E-34 266.6 52.9 503 452-1103 24-551 (691)
50 KOG0293 WD40 repeat-containing 100.0 2.1E-32 4.5E-37 273.9 25.7 295 402-913 218-514 (519)
51 KOG0316 Conserved WD40 repeat- 100.0 4.5E-32 9.8E-37 251.6 25.0 288 337-661 7-298 (307)
52 KOG0284 Polyadenylation factor 100.0 5.7E-33 1.2E-37 278.1 17.9 241 407-662 95-337 (464)
53 KOG1445 Tumor-specific antigen 100.0 1.3E-30 2.8E-35 273.8 35.7 651 339-1050 71-847 (1012)
54 KOG0645 WD40 repeat protein [G 100.0 1.3E-30 2.9E-35 247.6 31.9 243 403-662 9-261 (312)
55 KOG0266 WD40 repeat-containing 100.0 4.8E-31 1E-35 301.1 33.5 291 771-1100 158-454 (456)
56 KOG0281 Beta-TrCP (transducin 100.0 1.1E-32 2.3E-37 269.5 16.8 271 346-664 197-479 (499)
57 cd00200 WD40 WD40 domain, foun 100.0 2.8E-30 6E-35 283.4 36.5 282 345-660 8-289 (289)
58 KOG0282 mRNA splicing factor [ 100.0 3.5E-32 7.6E-37 279.1 19.5 292 445-910 206-503 (503)
59 KOG0282 mRNA splicing factor [ 100.0 2.2E-32 4.8E-37 280.5 17.7 294 335-660 202-503 (503)
60 KOG0275 Conserved WD40 repeat- 100.0 1.9E-32 4.2E-37 265.0 16.0 292 771-1098 212-507 (508)
61 KOG0278 Serine/threonine kinas 100.0 9E-31 2E-35 245.0 18.4 287 340-664 8-299 (334)
62 PLN00181 protein SPA1-RELATED; 100.0 5.7E-29 1.2E-33 307.5 40.4 291 345-661 482-792 (793)
63 KOG0316 Conserved WD40 repeat- 100.0 1.1E-29 2.3E-34 235.9 22.9 248 401-664 10-259 (307)
64 KOG0281 Beta-TrCP (transducin 100.0 8.7E-31 1.9E-35 256.2 16.3 232 407-664 196-430 (499)
65 cd00200 WD40 WD40 domain, foun 100.0 1.2E-28 2.5E-33 270.5 35.0 247 404-664 5-251 (289)
66 KOG0641 WD40 repeat protein [G 100.0 5.4E-28 1.2E-32 222.6 32.3 313 336-662 22-349 (350)
67 KOG0310 Conserved WD40 repeat- 100.0 6E-29 1.3E-33 256.1 28.0 283 345-661 25-308 (487)
68 PLN00181 protein SPA1-RELATED; 100.0 1.9E-28 4.1E-33 302.8 37.5 325 744-1099 457-792 (793)
69 KOG1445 Tumor-specific antigen 100.0 1.7E-27 3.8E-32 250.5 38.2 670 403-1104 74-848 (1012)
70 KOG0313 Microtubule binding pr 100.0 6E-29 1.3E-33 247.4 25.7 290 335-661 94-417 (423)
71 KOG0278 Serine/threonine kinas 100.0 8E-30 1.7E-34 238.7 16.4 297 767-1114 9-313 (334)
72 KOG0288 WD40 repeat protein Ti 100.0 9.5E-30 2.1E-34 255.7 18.1 294 333-659 161-458 (459)
73 KOG0973 Histone transcription 100.0 1.7E-28 3.6E-33 277.8 28.5 306 345-664 12-357 (942)
74 KOG0643 Translation initiation 100.0 1.4E-27 3E-32 226.4 26.7 286 343-664 7-319 (327)
75 KOG0643 Translation initiation 100.0 6.2E-27 1.3E-31 222.0 29.5 237 403-655 5-254 (327)
76 PTZ00421 coronin; Provisional 100.0 1E-26 2.2E-31 263.2 35.6 288 346-644 20-315 (493)
77 KOG0640 mRNA cleavage stimulat 100.0 1.4E-27 2.9E-32 230.6 23.0 313 336-661 102-425 (430)
78 KOG0310 Conserved WD40 repeat- 100.0 1.9E-27 4.2E-32 245.0 25.3 283 771-1101 25-310 (487)
79 KOG1446 Histone H3 (Lys4) meth 100.0 4.6E-26 9.9E-31 223.1 32.9 281 346-662 14-303 (311)
80 KOG0283 WD40 repeat-containing 100.0 1.3E-27 2.9E-32 263.8 24.7 300 345-664 266-578 (712)
81 KOG0647 mRNA export protein (c 100.0 7.3E-27 1.6E-31 225.7 26.5 274 345-651 26-312 (347)
82 KOG1446 Histone H3 (Lys4) meth 100.0 3.6E-26 7.8E-31 223.8 31.1 259 840-1118 14-279 (311)
83 KOG1407 WD40 repeat protein [F 100.0 2.6E-26 5.5E-31 217.2 28.7 274 345-653 19-293 (313)
84 KOG1407 WD40 repeat protein [F 100.0 2E-26 4.2E-31 218.0 27.0 276 448-903 15-293 (313)
85 KOG0277 Peroxisomal targeting 100.0 3.6E-27 7.9E-32 221.9 21.5 285 349-661 11-308 (311)
86 KOG0640 mRNA cleavage stimulat 100.0 4.8E-27 1E-31 226.8 22.4 253 404-664 108-385 (430)
87 KOG0274 Cdc4 and related F-box 100.0 1.4E-26 3.1E-31 261.5 30.2 283 345-671 207-490 (537)
88 KOG0313 Microtubule binding pr 100.0 2E-26 4.4E-31 229.5 27.0 282 451-911 103-417 (423)
89 KOG0772 Uncharacterized conser 100.0 1E-26 2.2E-31 239.9 25.6 298 770-1103 165-491 (641)
90 KOG0305 Anaphase promoting com 100.0 1.3E-26 2.7E-31 250.3 27.3 279 349-664 180-463 (484)
91 KOG0973 Histone transcription 100.0 1.7E-26 3.6E-31 261.7 26.3 303 771-1103 12-358 (942)
92 KOG0305 Anaphase promoting com 99.9 2.9E-26 6.3E-31 247.5 26.7 262 328-620 198-463 (484)
93 KOG0299 U3 snoRNP-associated p 99.9 5.3E-26 1.1E-30 232.5 26.3 285 344-650 140-443 (479)
94 KOG0277 Peroxisomal targeting 99.9 1.6E-26 3.5E-31 217.6 19.6 256 334-617 48-308 (311)
95 KOG0288 WD40 repeat protein Ti 99.9 3.9E-27 8.5E-32 237.0 16.4 247 404-664 171-419 (459)
96 KOG0294 WD40 repeat-containing 99.9 2.9E-25 6.3E-30 216.0 27.7 239 836-1102 40-283 (362)
97 KOG0308 Conserved WD40 repeat- 99.9 1.5E-26 3.3E-31 245.6 20.6 242 413-664 29-287 (735)
98 KOG0308 Conserved WD40 repeat- 99.9 3.5E-26 7.5E-31 242.9 23.0 287 351-662 29-327 (735)
99 PTZ00420 coronin; Provisional 99.9 1E-24 2.3E-29 247.0 35.3 256 365-644 50-318 (568)
100 KOG0300 WD40 repeat-containing 99.9 9.1E-26 2E-30 218.5 22.5 333 578-1049 139-478 (481)
101 PTZ00421 coronin; Provisional 99.9 4.9E-25 1.1E-29 249.5 32.4 250 407-664 19-292 (493)
102 KOG0268 Sof1-like rRNA process 99.9 9.9E-27 2.2E-31 230.0 15.7 200 448-664 61-261 (433)
103 KOG0301 Phospholipase A2-activ 99.9 3E-25 6.5E-30 237.9 28.0 282 337-662 4-288 (745)
104 KOG0299 U3 snoRNP-associated p 99.9 1.8E-25 3.9E-30 228.6 25.1 251 404-665 138-413 (479)
105 KOG0289 mRNA splicing factor [ 99.9 6.6E-25 1.4E-29 222.2 28.3 284 347-661 220-505 (506)
106 KOG0274 Cdc4 and related F-box 99.9 3.9E-25 8.5E-30 249.8 29.4 236 407-664 207-443 (537)
107 KOG0641 WD40 repeat protein [G 99.9 2.6E-24 5.7E-29 198.4 29.3 307 771-1100 31-349 (350)
108 KOG0283 WD40 repeat-containing 99.9 2.3E-25 4.9E-30 246.3 26.6 273 770-1049 265-578 (712)
109 KOG2096 WD40 repeat protein [G 99.9 1.4E-24 3E-29 210.9 28.7 252 774-1045 134-400 (420)
110 KOG0300 WD40 repeat-containing 99.9 1.3E-25 2.7E-30 217.5 21.3 297 337-664 138-478 (481)
111 KOG0268 Sof1-like rRNA process 99.9 1.9E-26 4.2E-31 227.9 15.6 287 340-664 59-347 (433)
112 KOG0772 Uncharacterized conser 99.9 3E-25 6.5E-30 229.1 24.2 303 336-662 156-487 (641)
113 KOG0289 mRNA splicing factor [ 99.9 1.5E-24 3.2E-29 219.6 28.1 281 634-1046 221-505 (506)
114 KOG0647 mRNA export protein (c 99.9 1.7E-24 3.6E-29 209.5 26.6 249 405-664 24-283 (347)
115 KOG0294 WD40 repeat-containing 99.9 2.6E-24 5.7E-29 209.3 27.1 278 362-664 4-283 (362)
116 KOG1036 Mitotic spindle checkp 99.9 4.6E-24 9.9E-29 207.7 27.9 269 345-652 12-294 (323)
117 KOG1274 WD40 repeat protein [G 99.9 4.4E-21 9.5E-26 213.0 53.9 276 345-659 12-297 (933)
118 KOG1963 WD40 repeat protein [G 99.9 4.4E-22 9.6E-27 220.8 43.0 509 413-1053 21-589 (792)
119 KOG0301 Phospholipase A2-activ 99.9 2.4E-24 5.2E-29 231.0 24.2 275 769-1100 11-288 (745)
120 KOG2096 WD40 repeat protein [G 99.9 6.2E-24 1.3E-28 206.4 24.8 220 402-664 80-310 (420)
121 KOG0264 Nucleosome remodeling 99.9 2.8E-24 6E-29 220.6 23.5 265 339-618 117-404 (422)
122 PTZ00420 coronin; Provisional 99.9 2.5E-23 5.4E-28 235.9 33.6 228 426-664 50-295 (568)
123 KOG1963 WD40 repeat protein [G 99.9 4.1E-22 8.9E-27 221.1 41.0 511 457-1108 20-591 (792)
124 KOG0639 Transducin-like enhanc 99.9 2.9E-24 6.2E-29 220.7 20.3 293 338-661 411-703 (705)
125 KOG1332 Vesicle coat complex C 99.9 2.7E-24 5.8E-29 201.6 18.3 252 404-662 7-286 (299)
126 KOG0639 Transducin-like enhanc 99.9 5.2E-24 1.1E-28 218.8 21.4 282 771-1100 418-704 (705)
127 KOG4283 Transcription-coupled 99.9 3.9E-23 8.5E-28 198.7 25.7 301 344-661 41-364 (397)
128 KOG1036 Mitotic spindle checkp 99.9 2.5E-22 5.5E-27 195.7 28.1 243 406-665 11-265 (323)
129 KOG0646 WD40 repeat protein [G 99.9 1.1E-22 2.4E-27 208.9 23.5 225 407-643 80-330 (476)
130 KOG0264 Nucleosome remodeling 99.9 8.4E-23 1.8E-27 209.8 22.3 253 405-664 121-406 (422)
131 KOG1332 Vesicle coat complex C 99.9 4.5E-23 9.6E-28 193.4 18.3 252 345-619 10-287 (299)
132 KOG1273 WD40 repeat protein [G 99.9 4E-22 8.6E-27 193.8 25.1 294 336-664 14-324 (405)
133 KOG1274 WD40 repeat protein [G 99.9 4.8E-22 1E-26 220.5 29.1 285 771-1098 12-298 (933)
134 KOG2055 WD40 repeat protein [G 99.9 2.3E-22 5E-27 205.7 24.4 289 497-912 213-512 (514)
135 KOG0646 WD40 repeat protein [G 99.9 6.5E-22 1.4E-26 203.3 26.8 291 566-987 17-332 (476)
136 KOG1538 Uncharacterized conser 99.9 3.1E-21 6.6E-26 205.0 32.5 274 348-664 14-295 (1081)
137 KOG2055 WD40 repeat protein [G 99.9 4E-22 8.8E-27 204.0 24.6 286 346-662 213-512 (514)
138 KOG1273 WD40 repeat protein [G 99.9 3.1E-22 6.6E-27 194.6 21.7 253 411-675 26-292 (405)
139 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2E-20 4.3E-25 206.7 38.4 292 469-934 3-300 (300)
140 KOG4328 WD40 protein [Function 99.9 9E-22 1.9E-26 201.4 24.7 294 345-662 185-495 (498)
141 KOG0650 WD40 repeat nucleolar 99.9 2.1E-21 4.6E-26 204.6 27.4 317 447-951 394-732 (733)
142 KOG0267 Microtubule severing p 99.9 1.8E-23 3.8E-28 225.1 11.0 235 405-653 25-259 (825)
143 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.3E-20 4.9E-25 206.2 34.5 275 361-671 3-287 (300)
144 KOG4283 Transcription-coupled 99.9 4.2E-21 9.1E-26 184.8 24.2 304 769-1099 40-364 (397)
145 KOG0270 WD40 repeat-containing 99.9 6.3E-21 1.4E-25 194.7 24.0 247 419-671 191-458 (463)
146 KOG0269 WD40 repeat-containing 99.9 2.1E-21 4.5E-26 211.2 20.1 297 346-664 39-342 (839)
147 KOG0321 WD40 repeat-containing 99.9 8.5E-21 1.8E-25 201.9 23.8 291 784-1103 64-394 (720)
148 KOG2445 Nuclear pore complex c 99.9 4.6E-20 1E-24 179.3 26.8 259 838-1103 12-321 (361)
149 KOG0269 WD40 repeat-containing 99.9 2.2E-21 4.8E-26 210.9 17.6 249 348-621 89-343 (839)
150 KOG0650 WD40 repeat nucleolar 99.9 2.6E-20 5.7E-25 196.4 23.6 330 579-1045 392-733 (733)
151 KOG0321 WD40 repeat-containing 99.9 2.4E-20 5.2E-25 198.5 23.2 289 351-664 54-393 (720)
152 KOG1538 Uncharacterized conser 99.9 6.5E-19 1.4E-23 187.5 33.9 274 543-955 14-294 (1081)
153 KOG1009 Chromatin assembly com 99.9 8.7E-20 1.9E-24 184.4 25.4 303 345-664 12-374 (434)
154 KOG2445 Nuclear pore complex c 99.9 2.8E-19 6E-24 174.0 26.6 255 404-662 9-318 (361)
155 KOG0267 Microtubule severing p 99.9 1.2E-21 2.6E-26 211.1 10.6 233 345-609 27-259 (825)
156 KOG0307 Vesicle coat complex C 99.9 4E-21 8.8E-26 219.1 15.3 253 407-664 63-329 (1049)
157 KOG1034 Transcriptional repres 99.8 2.8E-19 6E-24 175.5 22.8 290 345-662 37-383 (385)
158 COG2319 FOG: WD40 repeat [Gene 99.8 5.8E-17 1.3E-21 190.0 46.9 374 448-955 60-443 (466)
159 KOG4328 WD40 protein [Function 99.8 7.9E-19 1.7E-23 180.0 24.6 209 448-662 181-399 (498)
160 KOG0302 Ribosome Assembly prot 99.8 3.3E-19 7.2E-24 178.1 21.3 268 336-615 141-435 (440)
161 COG2319 FOG: WD40 repeat [Gene 99.8 2.2E-16 4.8E-21 185.1 49.1 288 344-664 63-361 (466)
162 KOG4497 Uncharacterized conser 99.8 8.7E-19 1.9E-23 171.6 22.1 408 413-948 13-426 (447)
163 KOG4378 Nuclear protein COP1 [ 99.8 4.6E-19 1E-23 182.6 21.2 217 777-1029 84-305 (673)
164 KOG4378 Nuclear protein COP1 [ 99.8 7.7E-19 1.7E-23 181.0 22.7 278 368-674 11-292 (673)
165 KOG2919 Guanine nucleotide-bin 99.8 1.3E-18 2.8E-23 170.3 22.2 289 348-653 51-361 (406)
166 KOG1034 Transcriptional repres 99.8 1E-18 2.2E-23 171.6 21.2 252 402-664 32-339 (385)
167 KOG1009 Chromatin assembly com 99.8 5.9E-18 1.3E-22 171.3 26.6 301 772-1103 13-375 (434)
168 KOG0302 Ribosome Assembly prot 99.8 1.5E-18 3.2E-23 173.5 21.6 249 404-660 147-436 (440)
169 KOG0303 Actin-binding protein 99.8 2.6E-18 5.7E-23 172.6 21.9 249 410-665 29-297 (472)
170 KOG0307 Vesicle coat complex C 99.8 4.9E-19 1.1E-23 202.3 18.1 301 295-621 11-330 (1049)
171 KOG0303 Actin-binding protein 99.8 3.9E-18 8.5E-23 171.4 21.8 234 403-643 76-320 (472)
172 KOG0270 WD40 repeat-containing 99.8 1.9E-18 4.1E-23 176.8 19.5 265 347-623 174-454 (463)
173 KOG1912 WD40 repeat protein [G 99.8 1.4E-16 3E-21 173.4 33.6 631 346-1056 15-750 (1062)
174 KOG2919 Guanine nucleotide-bin 99.8 3.6E-17 7.8E-22 160.3 26.4 210 456-674 52-293 (406)
175 KOG4497 Uncharacterized conser 99.8 2.4E-17 5.2E-22 161.7 24.4 378 546-1092 13-424 (447)
176 KOG1912 WD40 repeat protein [G 99.8 4.7E-16 1E-20 169.3 34.4 473 409-983 16-572 (1062)
177 KOG1524 WD40 repeat-containing 99.8 3.9E-16 8.5E-21 162.8 32.2 490 406-1049 12-525 (737)
178 KOG1188 WD40 repeat protein [G 99.8 1.8E-17 4E-22 164.0 18.2 292 469-801 42-345 (376)
179 KOG0649 WD40 repeat protein [G 99.8 6.1E-16 1.3E-20 145.6 25.2 288 773-1098 11-314 (325)
180 KOG1524 WD40 repeat-containing 99.8 3.9E-16 8.4E-21 162.9 26.1 270 345-660 13-284 (737)
181 KOG0642 Cell-cycle nuclear pro 99.7 9.5E-18 2.1E-22 177.0 14.0 250 404-664 290-563 (577)
182 KOG0322 G-protein beta subunit 99.7 7E-17 1.5E-21 153.9 18.5 308 533-953 6-322 (323)
183 PRK11028 6-phosphogluconolacto 99.7 1.2E-15 2.5E-20 169.6 31.4 252 840-1107 34-311 (330)
184 KOG0649 WD40 repeat protein [G 99.7 1.1E-15 2.5E-20 143.7 25.6 281 348-659 12-313 (325)
185 KOG4227 WD40 repeat protein [G 99.7 2.5E-16 5.3E-21 157.7 22.5 293 343-662 53-387 (609)
186 KOG0290 Conserved WD40 repeat- 99.7 6E-16 1.3E-20 149.6 23.7 290 339-658 37-361 (364)
187 KOG0644 Uncharacterized conser 99.7 9.1E-18 2E-22 183.8 12.7 278 343-664 187-470 (1113)
188 KOG1310 WD40 repeat protein [G 99.7 1E-16 2.2E-21 167.6 19.1 241 403-672 45-313 (758)
189 KOG1007 WD repeat protein TSSC 99.7 1.1E-16 2.3E-21 154.4 17.8 217 335-574 110-360 (370)
190 PRK11028 6-phosphogluconolacto 99.7 1.6E-15 3.5E-20 168.5 30.1 275 739-1047 6-304 (330)
191 KOG0322 G-protein beta subunit 99.7 7.1E-17 1.5E-21 153.9 16.0 289 339-661 6-322 (323)
192 KOG2110 Uncharacterized conser 99.7 1.1E-14 2.3E-19 146.3 32.0 242 408-664 5-250 (391)
193 KOG1188 WD40 repeat protein [G 99.7 2.6E-16 5.7E-21 155.9 20.3 275 360-663 41-347 (376)
194 KOG0642 Cell-cycle nuclear pro 99.7 4.9E-17 1.1E-21 171.7 15.5 267 342-629 289-572 (577)
195 KOG1007 WD repeat protein TSSC 99.7 7.7E-16 1.7E-20 148.6 21.4 255 344-618 61-361 (370)
196 KOG1587 Cytoplasmic dynein int 99.7 1.4E-15 3E-20 170.7 25.3 271 328-619 225-517 (555)
197 KOG1334 WD40 repeat protein [G 99.7 1E-16 2.2E-21 165.8 14.0 296 341-663 136-467 (559)
198 KOG4227 WD40 repeat protein [G 99.7 2.5E-15 5.3E-20 150.7 21.7 300 535-954 50-387 (609)
199 KOG1517 Guanine nucleotide bin 99.7 3.2E-15 6.9E-20 168.4 24.5 302 455-914 1066-1383(1387)
200 KOG1587 Cytoplasmic dynein int 99.7 4.4E-15 9.5E-20 166.7 25.5 250 407-664 241-518 (555)
201 KOG0771 Prolactin regulatory e 99.7 4.1E-16 9E-21 159.6 15.5 199 885-1101 148-355 (398)
202 KOG1517 Guanine nucleotide bin 99.7 1.2E-14 2.6E-19 163.9 27.3 201 847-1050 1172-1384(1387)
203 KOG0644 Uncharacterized conser 99.7 1.8E-16 4E-21 173.8 12.3 289 578-958 181-472 (1113)
204 KOG0290 Conserved WD40 repeat- 99.7 6.2E-15 1.3E-19 142.7 20.6 261 333-614 81-361 (364)
205 KOG2110 Uncharacterized conser 99.7 2.3E-14 5E-19 144.0 25.2 240 840-1103 5-251 (391)
206 KOG0771 Prolactin regulatory e 99.7 1E-15 2.2E-20 156.8 14.6 198 844-1048 148-355 (398)
207 KOG1240 Protein kinase contain 99.6 4.5E-14 9.8E-19 162.1 28.0 255 404-664 1044-1336(1431)
208 PF02239 Cytochrom_D1: Cytochr 99.6 4.2E-13 9.1E-18 147.6 33.9 331 468-960 7-353 (369)
209 COG4946 Uncharacterized protei 99.6 1.7E-11 3.6E-16 127.0 42.1 142 773-943 360-507 (668)
210 PRK01742 tolB translocation pr 99.6 2.8E-14 6.1E-19 163.2 24.8 235 368-643 183-426 (429)
211 KOG1334 WD40 repeat protein [G 99.6 2.6E-15 5.7E-20 155.5 14.2 324 448-915 137-469 (559)
212 PF02239 Cytochrom_D1: Cytochr 99.6 1.4E-12 3E-17 143.5 35.0 319 512-1010 6-355 (369)
213 KOG2321 WD40 repeat protein [G 99.6 6.1E-14 1.3E-18 148.3 22.6 289 338-663 43-344 (703)
214 KOG2139 WD40 repeat protein [G 99.6 3.8E-13 8.3E-18 134.5 26.2 285 346-662 98-431 (445)
215 KOG1523 Actin-related protein 99.6 7.4E-14 1.6E-18 137.5 20.8 237 346-609 10-269 (361)
216 KOG2111 Uncharacterized conser 99.6 1.7E-12 3.7E-17 128.2 30.1 241 410-664 7-258 (346)
217 KOG0974 WD-repeat protein WDR6 99.6 1.6E-11 3.4E-16 140.3 42.0 195 347-576 88-289 (967)
218 KOG1240 Protein kinase contain 99.6 2.4E-13 5.1E-18 156.4 25.7 270 335-620 1036-1336(1431)
219 COG4946 Uncharacterized protei 99.6 1.8E-10 3.8E-15 119.6 43.5 529 330-1048 62-655 (668)
220 KOG2041 WD40 repeat protein [G 99.6 2.8E-12 6E-17 138.8 31.8 566 346-1048 14-620 (1189)
221 PRK01742 tolB translocation pr 99.6 8.2E-14 1.8E-18 159.4 21.6 234 328-599 185-426 (429)
222 KOG0974 WD-repeat protein WDR6 99.6 1.4E-11 2.9E-16 140.8 38.1 278 347-664 8-290 (967)
223 KOG1523 Actin-related protein 99.6 2.1E-13 4.6E-18 134.4 20.2 233 407-650 9-267 (361)
224 PF04762 IKI3: IKI3 family; I 99.6 9E-09 1.9E-13 126.0 64.3 535 406-1051 73-688 (928)
225 KOG2111 Uncharacterized conser 99.6 9.6E-13 2.1E-17 129.9 23.4 242 840-1103 5-259 (346)
226 KOG2139 WD40 repeat protein [G 99.6 2.7E-12 5.9E-17 128.5 26.5 284 773-1100 99-431 (445)
227 KOG2394 WD40 protein DMR-N9 [G 99.5 3.3E-13 7.2E-18 141.8 19.9 117 840-957 290-455 (636)
228 PRK03629 tolB translocation pr 99.5 3.7E-12 8.1E-17 145.2 29.3 236 370-642 180-427 (429)
229 KOG1272 WD40-repeat-containing 99.5 3.7E-14 8E-19 146.2 11.1 273 348-659 131-406 (545)
230 KOG1832 HIV-1 Vpr-binding prot 99.5 3.2E-14 6.9E-19 157.0 10.7 349 161-650 1004-1377(1516)
231 KOG2041 WD40 repeat protein [G 99.5 1.1E-10 2.4E-15 126.6 36.7 520 340-1002 64-618 (1189)
232 KOG3881 Uncharacterized conser 99.5 3.3E-12 7.1E-17 129.7 22.4 272 346-642 55-341 (412)
233 PRK03629 tolB translocation pr 99.5 3E-12 6.6E-17 146.0 25.2 238 327-598 179-427 (429)
234 KOG1310 WD40 repeat protein [G 99.5 2.1E-13 4.5E-18 143.3 14.1 238 345-626 49-311 (758)
235 PRK05137 tolB translocation pr 99.5 9.3E-12 2E-16 143.2 28.9 222 404-642 197-432 (435)
236 KOG2394 WD40 protein DMR-N9 [G 99.5 4.4E-13 9.6E-18 140.9 16.1 154 346-506 219-383 (636)
237 PRK04922 tolB translocation pr 99.5 8.2E-12 1.8E-16 143.4 27.5 238 369-642 184-432 (433)
238 KOG1272 WD40-repeat-containing 99.5 1.1E-13 2.5E-18 142.7 10.6 231 409-660 130-360 (545)
239 PRK02889 tolB translocation pr 99.5 3.6E-12 7.7E-17 145.7 23.7 239 326-598 175-424 (427)
240 PRK04922 tolB translocation pr 99.5 4.6E-12 9.9E-17 145.5 24.2 237 328-598 185-432 (433)
241 KOG2314 Translation initiation 99.5 1.4E-11 3E-16 130.3 25.2 316 317-664 215-575 (698)
242 KOG2315 Predicted translation 99.5 7.9E-11 1.7E-15 125.5 29.9 282 346-664 34-346 (566)
243 KOG2315 Predicted translation 99.5 5.7E-11 1.2E-15 126.6 28.3 331 541-955 34-391 (566)
244 KOG1409 Uncharacterized conser 99.5 8.1E-12 1.8E-16 124.5 20.5 344 579-1048 16-395 (404)
245 PRK02889 tolB translocation pr 99.5 1.4E-11 3.1E-16 140.8 25.9 223 405-642 192-424 (427)
246 PF10282 Lactonase: Lactonase, 99.4 5.7E-10 1.2E-14 123.8 37.5 212 841-1053 87-330 (345)
247 KOG1354 Serine/threonine prote 99.4 4.4E-11 9.4E-16 119.2 24.9 190 453-664 25-246 (433)
248 PRK05137 tolB translocation pr 99.4 2.8E-11 6.2E-16 139.2 26.5 239 326-598 181-432 (435)
249 PF04762 IKI3: IKI3 family; I 99.4 1.5E-07 3.2E-12 115.5 59.2 519 409-1100 22-639 (928)
250 COG2706 3-carboxymuconate cycl 99.4 7.5E-10 1.6E-14 112.7 32.3 257 840-1111 39-332 (346)
251 COG2706 3-carboxymuconate cycl 99.4 3.8E-10 8.1E-15 114.9 30.2 280 744-1051 15-327 (346)
252 COG5354 Uncharacterized protei 99.4 2.6E-10 5.5E-15 120.0 29.8 361 524-1039 15-421 (561)
253 KOG1354 Serine/threonine prote 99.4 7.1E-11 1.5E-15 117.7 21.6 263 345-621 24-362 (433)
254 KOG3881 Uncharacterized conser 99.4 6.6E-11 1.4E-15 120.4 21.5 250 407-669 54-327 (412)
255 PF08662 eIF2A: Eukaryotic tra 99.4 4E-11 8.7E-16 119.5 19.7 110 840-955 59-180 (194)
256 PRK01029 tolB translocation pr 99.4 1.6E-10 3.5E-15 131.1 26.3 244 327-600 165-426 (428)
257 COG5354 Uncharacterized protei 99.4 6.3E-10 1.4E-14 117.2 28.2 314 314-664 34-397 (561)
258 KOG2321 WD40 repeat protein [G 99.4 7.2E-11 1.6E-15 125.5 21.1 285 451-803 49-344 (703)
259 TIGR02658 TTQ_MADH_Hv methylam 99.3 3.9E-09 8.3E-14 113.0 32.9 203 844-1055 108-338 (352)
260 PF08662 eIF2A: Eukaryotic tra 99.3 1.6E-10 3.4E-15 115.3 20.4 163 412-583 9-186 (194)
261 PRK00178 tolB translocation pr 99.3 3.5E-10 7.5E-15 130.7 26.0 237 329-598 181-427 (430)
262 PF10282 Lactonase: Lactonase, 99.3 8.7E-09 1.9E-13 114.3 35.7 247 408-662 36-322 (345)
263 TIGR02800 propeller_TolB tol-p 99.3 6.6E-10 1.4E-14 128.5 27.7 204 861-1092 170-386 (417)
264 PRK01029 tolB translocation pr 99.3 1.6E-09 3.5E-14 123.0 29.4 227 405-644 181-426 (428)
265 PRK04792 tolB translocation pr 99.3 3.3E-10 7.2E-15 129.8 24.0 237 329-598 200-446 (448)
266 KOG2314 Translation initiation 99.3 2.2E-09 4.8E-14 113.9 27.6 293 774-1100 251-573 (698)
267 PRK00178 tolB translocation pr 99.3 1.8E-09 3.8E-14 124.8 29.5 222 405-642 195-427 (430)
268 PRK04792 tolB translocation pr 99.3 1.4E-09 3.1E-14 124.6 28.0 222 405-642 214-446 (448)
269 TIGR02658 TTQ_MADH_Hv methylam 99.3 8.8E-09 1.9E-13 110.3 31.8 239 848-1104 53-334 (352)
270 TIGR02800 propeller_TolB tol-p 99.3 8.6E-10 1.9E-14 127.5 25.6 226 327-585 170-406 (417)
271 KOG4547 WD40 repeat-containing 99.3 1.4E-09 3.1E-14 117.3 24.3 194 417-619 2-221 (541)
272 KOG4547 WD40 repeat-containing 99.2 4.9E-09 1.1E-13 113.2 23.0 190 360-575 6-220 (541)
273 TIGR03300 assembly_YfgL outer 99.1 6.2E-08 1.3E-12 110.0 32.8 145 469-626 67-216 (377)
274 KOG1409 Uncharacterized conser 99.1 1.4E-09 3.1E-14 108.7 16.4 211 448-673 19-238 (404)
275 KOG2659 LisH motif-containing 99.1 3.8E-10 8.3E-15 108.7 12.0 168 4-182 25-204 (228)
276 KOG0280 Uncharacterized conser 99.1 5.7E-09 1.2E-13 102.4 19.6 252 346-620 69-335 (339)
277 KOG0280 Uncharacterized conser 99.1 8.5E-09 1.8E-13 101.2 20.0 198 843-1049 124-335 (339)
278 PLN02919 haloacid dehalogenase 99.1 6.2E-08 1.4E-12 121.3 32.5 257 844-1104 571-892 (1057)
279 KOG0309 Conserved WD40 repeat- 99.1 1.2E-09 2.6E-14 119.5 13.2 285 311-619 23-340 (1081)
280 PLN02919 haloacid dehalogenase 99.0 8.8E-08 1.9E-12 120.0 30.2 261 776-1051 571-892 (1057)
281 TIGR03300 assembly_YfgL outer 99.0 1.4E-07 3.1E-12 107.0 27.0 286 329-659 77-376 (377)
282 KOG4190 Uncharacterized conser 99.0 5.5E-09 1.2E-13 110.3 13.0 246 402-661 729-987 (1034)
283 PRK04043 tolB translocation pr 99.0 2.5E-07 5.5E-12 104.3 26.7 217 326-576 168-401 (419)
284 KOG1064 RAVE (regulator of V-A 98.9 5.2E-09 1.1E-13 125.6 11.8 200 405-628 2205-2408(2439)
285 KOG4190 Uncharacterized conser 98.9 3.4E-09 7.4E-14 111.9 8.7 217 874-1111 728-959 (1034)
286 KOG1064 RAVE (regulator of V-A 98.9 6.4E-09 1.4E-13 124.8 11.9 214 860-1109 2189-2407(2439)
287 PF15492 Nbas_N: Neuroblastoma 98.9 1.3E-06 2.7E-11 86.9 24.3 209 846-1058 3-270 (282)
288 PF15492 Nbas_N: Neuroblastoma 98.8 1.9E-06 4.1E-11 85.7 24.5 217 887-1108 3-269 (282)
289 PF07433 DUF1513: Protein of u 98.8 3.4E-06 7.3E-11 87.0 26.4 208 843-1056 7-256 (305)
290 KOG3617 WD40 and TPR repeat-co 98.8 8.4E-07 1.8E-11 99.2 23.3 221 412-659 19-256 (1416)
291 KOG1832 HIV-1 Vpr-binding prot 98.8 3.8E-09 8.2E-14 117.8 5.1 216 404-649 1097-1318(1516)
292 PRK04043 tolB translocation pr 98.8 1.8E-06 3.8E-11 97.5 26.3 216 430-663 169-401 (419)
293 KOG0309 Conserved WD40 repeat- 98.8 1.6E-07 3.5E-12 103.3 16.3 302 333-664 11-341 (1081)
294 KOG4532 WD40-like repeat conta 98.7 1.3E-06 2.7E-11 85.0 19.6 176 362-560 131-321 (344)
295 KOG3914 WD repeat protein WDR4 98.7 1E-07 2.2E-12 98.4 12.9 165 348-538 64-232 (390)
296 PRK11138 outer membrane biogen 98.7 8.1E-06 1.8E-10 93.0 29.3 308 512-953 70-393 (394)
297 COG5170 CDC55 Serine/threonine 98.7 3.4E-07 7.4E-12 90.5 15.2 248 407-662 25-367 (460)
298 KOG4532 WD40-like repeat conta 98.7 2.8E-06 6.1E-11 82.6 20.9 232 419-662 83-331 (344)
299 PF07433 DUF1513: Protein of u 98.7 1.3E-05 2.8E-10 82.8 27.0 234 348-612 6-279 (305)
300 KOG0882 Cyclophilin-related pe 98.7 1.3E-06 2.9E-11 91.1 19.5 215 451-673 7-241 (558)
301 COG5170 CDC55 Serine/threonine 98.7 5.2E-07 1.1E-11 89.2 15.8 255 346-617 26-366 (460)
302 KOG3914 WD repeat protein WDR4 98.7 1.4E-07 3.1E-12 97.3 12.2 160 776-961 66-230 (390)
303 PF13360 PQQ_2: PQQ-like domai 98.7 3.5E-06 7.6E-11 88.9 23.5 225 860-1107 2-237 (238)
304 PRK11138 outer membrane biogen 98.7 1.3E-05 2.8E-10 91.2 28.9 187 469-664 71-276 (394)
305 KOG4714 Nucleoporin [Nuclear s 98.7 1.4E-06 3.1E-11 84.3 17.0 95 861-955 159-255 (319)
306 KOG1897 Damage-specific DNA bi 98.7 0.0025 5.5E-08 74.3 48.7 283 774-1103 585-901 (1096)
307 KOG3617 WD40 and TPR repeat-co 98.6 2.8E-06 6.1E-11 95.1 21.0 112 347-485 16-131 (1416)
308 KOG4714 Nucleoporin [Nuclear s 98.6 6.8E-07 1.5E-11 86.5 14.1 209 349-576 39-255 (319)
309 KOG4649 PQQ (pyrrolo-quinoline 98.6 5.8E-05 1.3E-09 73.5 26.1 143 353-524 17-160 (354)
310 PF08450 SGL: SMP-30/Gluconola 98.6 6.2E-05 1.3E-09 79.5 29.7 218 413-651 4-244 (246)
311 KOG1645 RING-finger-containing 98.6 1E-05 2.2E-10 83.7 21.9 249 403-662 188-461 (463)
312 PF08450 SGL: SMP-30/Gluconola 98.6 0.0001 2.2E-09 77.9 30.8 219 351-606 4-243 (246)
313 KOG0882 Cyclophilin-related pe 98.5 4.3E-06 9.3E-11 87.4 18.1 300 771-1097 8-369 (558)
314 PF13360 PQQ_2: PQQ-like domai 98.5 4.1E-05 8.9E-10 80.7 26.1 221 368-624 2-236 (238)
315 PF00930 DPPIV_N: Dipeptidyl p 98.5 4.8E-05 1E-09 84.9 27.4 266 355-652 1-347 (353)
316 KOG1920 IkappaB kinase complex 98.5 2.3E-05 4.9E-10 92.6 25.0 270 772-1098 68-363 (1265)
317 KOG2695 WD40 repeat protein [G 98.5 3.5E-07 7.5E-12 92.1 8.6 165 352-540 217-387 (425)
318 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00047 1E-08 67.4 28.9 137 512-658 24-161 (354)
319 PF00400 WD40: WD domain, G-be 98.4 6.6E-07 1.4E-11 62.8 6.3 39 914-952 1-39 (39)
320 PF06433 Me-amine-dh_H: Methyl 98.4 5.8E-05 1.3E-09 78.9 22.8 284 567-922 17-330 (342)
321 KOG1920 IkappaB kinase complex 98.4 8.2E-05 1.8E-09 88.1 25.8 279 346-661 68-364 (1265)
322 KOG1275 PAB-dependent poly(A) 98.4 4.6E-06 1E-10 94.8 15.1 178 851-1045 146-340 (1118)
323 PF14583 Pectate_lyase22: Olig 98.4 0.0012 2.7E-08 70.6 32.4 299 333-661 16-380 (386)
324 PRK02888 nitrous-oxide reducta 98.4 5.2E-05 1.1E-09 85.8 23.1 232 850-1101 139-405 (635)
325 KOG2114 Vacuolar assembly/sort 98.4 2.3E-05 4.9E-10 89.1 19.9 205 888-1109 30-252 (933)
326 PRK02888 nitrous-oxide reducta 98.3 0.0001 2.2E-09 83.5 24.0 105 847-955 283-405 (635)
327 PF06433 Me-amine-dh_H: Methyl 98.3 0.00022 4.7E-09 74.8 24.4 205 845-1057 99-330 (342)
328 KOG2695 WD40 repeat protein [G 98.3 1.7E-06 3.6E-11 87.3 8.6 163 459-630 217-388 (425)
329 KOG0396 Uncharacterized conser 98.3 4.6E-06 1E-10 85.4 11.8 118 6-125 116-242 (389)
330 KOG3621 WD40 repeat-containing 98.3 0.00017 3.7E-09 80.6 24.2 289 345-671 32-362 (726)
331 PF00400 WD40: WD domain, G-be 98.3 2.7E-06 5.9E-11 59.6 6.5 39 871-910 1-39 (39)
332 PF10607 CLTH: CTLH/CRA C-term 98.3 3.8E-06 8.3E-11 80.0 9.2 134 38-182 5-141 (145)
333 KOG2114 Vacuolar assembly/sort 98.3 0.00011 2.5E-09 83.6 21.8 200 415-627 30-252 (933)
334 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0004 8.7E-09 77.5 24.3 266 332-606 28-345 (353)
335 KOG1645 RING-finger-containing 98.1 0.00012 2.6E-09 75.9 16.6 237 863-1110 175-429 (463)
336 KOG1897 Damage-specific DNA bi 98.1 0.047 1E-06 64.3 56.0 224 853-1100 685-942 (1096)
337 KOG2066 Vacuolar assembly/sort 98.1 0.00025 5.5E-09 80.4 20.0 147 849-1003 80-233 (846)
338 PF04053 Coatomer_WDAD: Coatom 98.1 0.00047 1E-08 77.6 22.3 222 840-1103 32-265 (443)
339 KOG2066 Vacuolar assembly/sort 98.0 0.00011 2.3E-09 83.3 15.5 188 881-1100 39-233 (846)
340 cd00216 PQQ_DH Dehydrogenases 98.0 0.0051 1.1E-07 71.8 30.4 191 469-664 63-321 (488)
341 KOG3621 WD40 repeat-containing 98.0 0.00066 1.4E-08 76.1 20.8 204 771-1009 32-252 (726)
342 PF08513 LisH: LisH; InterPro 98.0 9.2E-06 2E-10 50.2 3.7 27 6-32 1-27 (27)
343 cd00216 PQQ_DH Dehydrogenases 98.0 0.0056 1.2E-07 71.5 29.9 100 854-961 303-431 (488)
344 PF02897 Peptidase_S9_N: Proly 98.0 0.0066 1.4E-07 69.9 30.1 250 349-623 126-409 (414)
345 KOG1275 PAB-dependent poly(A) 98.0 0.00015 3.3E-09 82.9 15.2 183 419-617 146-341 (1118)
346 PF11768 DUF3312: Protein of u 97.9 0.00042 9.2E-09 76.6 18.1 115 840-957 205-332 (545)
347 PF11768 DUF3312: Protein of u 97.9 0.0026 5.6E-08 70.6 23.9 115 976-1103 207-332 (545)
348 COG0823 TolB Periplasmic compo 97.9 0.0024 5.2E-08 71.8 23.5 196 449-653 188-390 (425)
349 PF14583 Pectate_lyase22: Olig 97.9 0.0057 1.2E-07 65.7 24.8 291 774-1100 37-381 (386)
350 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.048 1E-06 63.9 35.0 108 512-627 70-198 (527)
351 smart00668 CTLH C-terminal to 97.9 1.5E-05 3.2E-10 61.7 4.0 52 38-90 5-56 (58)
352 smart00667 LisH Lissencephaly 97.9 2.1E-05 4.5E-10 53.0 4.1 31 5-35 3-33 (34)
353 PF08596 Lgl_C: Lethal giant l 97.8 0.007 1.5E-07 67.3 25.7 242 410-661 3-334 (395)
354 COG0823 TolB Periplasmic compo 97.8 0.0018 3.8E-08 72.8 20.9 178 861-1053 173-364 (425)
355 PF04053 Coatomer_WDAD: Coatom 97.8 0.0058 1.3E-07 68.9 24.5 222 406-664 30-264 (443)
356 PF06977 SdiA-regulated: SdiA- 97.8 0.012 2.6E-07 60.5 24.4 191 346-559 21-239 (248)
357 PF08596 Lgl_C: Lethal giant l 97.8 0.0091 2E-07 66.5 24.9 253 348-607 3-325 (395)
358 PF04841 Vps16_N: Vps16, N-ter 97.7 0.02 4.4E-07 64.8 26.7 200 845-1058 33-257 (410)
359 COG3490 Uncharacterized protei 97.7 0.0066 1.4E-07 60.7 19.1 233 845-1098 72-346 (366)
360 PF06977 SdiA-regulated: SdiA- 97.6 0.012 2.7E-07 60.5 21.9 202 840-1044 21-247 (248)
361 KOG1008 Uncharacterized conser 97.6 2.2E-05 4.7E-10 86.1 1.8 203 347-575 57-275 (783)
362 COG3391 Uncharacterized conser 97.6 0.11 2.4E-06 58.5 31.0 263 338-628 22-293 (381)
363 KOG1008 Uncharacterized conser 97.6 0.00013 2.9E-09 80.2 6.7 199 840-1047 56-275 (783)
364 COG3391 Uncharacterized conser 97.6 0.027 5.8E-07 63.4 25.5 207 843-1057 76-293 (381)
365 PF00780 CNH: CNH domain; Int 97.5 0.04 8.8E-07 59.3 25.4 234 782-1058 5-266 (275)
366 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.32 7E-06 57.1 33.8 192 469-665 71-336 (527)
367 PF02897 Peptidase_S9_N: Proly 97.5 0.096 2.1E-06 60.3 29.5 243 410-664 125-406 (414)
368 PRK13616 lipoprotein LpqB; Pro 97.4 0.023 5E-07 66.9 23.6 151 881-1047 349-525 (591)
369 COG3490 Uncharacterized protei 97.4 0.023 4.9E-07 57.0 19.0 247 592-910 71-346 (366)
370 COG3386 Gluconolactonase [Carb 97.3 0.047 1E-06 58.5 22.6 217 847-1087 31-272 (307)
371 PRK13616 lipoprotein LpqB; Pro 97.3 0.0093 2E-07 70.2 18.7 186 841-1040 350-561 (591)
372 KOG2817 Predicted E3 ubiquitin 97.3 0.0017 3.8E-08 68.2 10.5 113 6-119 117-241 (394)
373 PF08553 VID27: VID27 cytoplas 97.3 0.035 7.5E-07 66.3 22.3 148 893-1046 492-646 (794)
374 PF03178 CPSF_A: CPSF A subuni 97.2 0.049 1.1E-06 60.1 21.8 177 370-575 3-202 (321)
375 PF04841 Vps16_N: Vps16, N-ter 97.2 0.26 5.7E-06 55.9 27.6 176 409-599 81-270 (410)
376 cd08044 TAF5_NTD2 TAF5_NTD2 is 97.1 0.0012 2.7E-08 60.9 6.9 82 67-149 25-113 (133)
377 PRK10115 protease 2; Provision 97.0 1.1 2.4E-05 54.6 32.9 244 410-664 128-396 (686)
378 PF00780 CNH: CNH domain; Int 97.0 0.2 4.4E-06 53.8 24.3 227 849-1104 4-259 (275)
379 PF14870 PSII_BNR: Photosynthe 97.0 0.51 1.1E-05 50.3 26.1 160 878-1044 141-301 (302)
380 PF03178 CPSF_A: CPSF A subuni 97.0 0.18 4E-06 55.5 24.1 218 430-661 2-264 (321)
381 PRK10115 protease 2; Provision 96.9 1.8 3.9E-05 52.8 33.1 244 348-621 128-397 (686)
382 smart00320 WD40 WD40 repeats. 96.9 0.0027 5.8E-08 43.7 5.6 39 914-952 2-40 (40)
383 KOG4640 Anaphase-promoting com 96.9 0.0042 9E-08 69.0 9.4 92 840-933 20-114 (665)
384 PF05096 Glu_cyclase_2: Glutam 96.9 0.35 7.5E-06 49.6 22.0 203 840-1094 44-255 (264)
385 KOG4640 Anaphase-promoting com 96.8 0.0044 9.6E-08 68.9 9.1 93 882-983 21-114 (665)
386 PF04494 TFIID_90kDa: WD40 ass 96.8 0.0024 5.2E-08 59.7 5.9 82 67-149 36-124 (142)
387 PF14655 RAB3GAP2_N: Rab3 GTPa 96.8 0.75 1.6E-05 51.2 25.8 84 541-628 307-408 (415)
388 TIGR03074 PQQ_membr_DH membran 96.7 2.3 5.1E-05 51.9 40.0 197 469-665 196-480 (764)
389 COG3386 Gluconolactonase [Carb 96.7 0.38 8.2E-06 51.6 22.6 223 351-607 29-274 (307)
390 PF05694 SBP56: 56kDa selenium 96.7 0.39 8.4E-06 52.5 22.0 238 783-1036 86-392 (461)
391 KOG2395 Protein involved in va 96.7 0.043 9.4E-07 59.9 14.7 144 466-617 345-499 (644)
392 COG3204 Uncharacterized protei 96.6 0.45 9.8E-06 48.7 20.7 175 878-1056 82-271 (316)
393 PF08553 VID27: VID27 cytoplas 96.6 0.046 1E-06 65.2 16.3 145 466-617 493-646 (794)
394 PF10647 Gmad1: Lipoprotein Lp 96.6 0.27 6E-06 51.6 20.5 163 841-1007 24-201 (253)
395 PF10647 Gmad1: Lipoprotein Lp 96.6 0.11 2.3E-06 54.6 17.4 148 883-1040 25-188 (253)
396 KOG4441 Proteins containing BT 96.6 0.17 3.6E-06 59.9 20.8 233 418-664 283-548 (571)
397 PF15390 DUF4613: Domain of un 96.6 1 2.2E-05 50.7 24.8 153 454-619 20-187 (671)
398 smart00320 WD40 WD40 repeats. 96.6 0.0064 1.4E-07 41.7 5.6 39 871-910 2-40 (40)
399 PF14655 RAB3GAP2_N: Rab3 GTPa 96.5 0.28 6.1E-06 54.6 20.4 82 840-921 307-407 (415)
400 PF14783 BBS2_Mid: Ciliary BBS 96.4 0.2 4.4E-06 43.4 14.5 102 411-524 2-109 (111)
401 PF07995 GSDH: Glucose / Sorbo 96.4 1.4 3E-05 48.5 25.1 243 843-1095 4-330 (331)
402 PF15390 DUF4613: Domain of un 96.4 0.081 1.8E-06 59.0 14.8 157 882-1049 20-188 (671)
403 KOG2395 Protein involved in va 96.3 0.073 1.6E-06 58.3 14.0 145 896-1047 348-500 (644)
404 PHA02713 hypothetical protein; 96.3 0.28 6.1E-06 58.2 20.3 225 862-1116 273-547 (557)
405 PF07995 GSDH: Glucose / Sorbo 96.3 2.4 5.2E-05 46.7 27.1 68 590-657 254-330 (331)
406 PF05694 SBP56: 56kDa selenium 96.2 2.2 4.8E-05 46.8 24.4 257 337-607 52-392 (461)
407 PHA02713 hypothetical protein; 96.2 0.24 5.2E-06 58.8 19.1 190 464-664 303-535 (557)
408 TIGR03074 PQQ_membr_DH membran 96.2 0.92 2E-05 55.3 24.0 239 853-1110 195-487 (764)
409 PF14727 PHTB1_N: PTHB1 N-term 96.1 3.1 6.7E-05 46.6 31.2 283 784-1106 37-366 (418)
410 PF14783 BBS2_Mid: Ciliary BBS 96.1 0.36 7.8E-06 41.9 14.2 84 456-549 2-88 (111)
411 KOG2079 Vacuolar assembly/sort 96.1 0.081 1.8E-06 63.0 13.6 104 419-528 98-202 (1206)
412 COG3204 Uncharacterized protei 96.0 1.5 3.2E-05 45.1 20.5 168 405-582 82-269 (316)
413 KOG2444 WD40 repeat protein [G 95.9 0.024 5.2E-07 55.3 7.1 105 852-956 70-179 (238)
414 PF05096 Glu_cyclase_2: Glutam 95.8 2.6 5.7E-05 43.4 21.6 192 772-994 44-250 (264)
415 KOG4499 Ca2+-binding protein R 95.7 1.2 2.5E-05 43.9 17.1 137 453-599 108-264 (310)
416 PF12894 Apc4_WD40: Anaphase-p 95.7 0.039 8.5E-07 39.7 5.7 34 346-381 11-44 (47)
417 KOG2444 WD40 repeat protein [G 95.5 0.047 1E-06 53.4 7.5 70 987-1058 71-143 (238)
418 KOG2079 Vacuolar assembly/sort 95.4 0.048 1E-06 64.8 8.4 102 851-955 98-204 (1206)
419 PF14727 PHTB1_N: PTHB1 N-term 95.4 6.2 0.00013 44.3 32.7 277 356-664 34-362 (418)
420 KOG4441 Proteins containing BT 95.3 2 4.2E-05 51.1 21.8 236 849-1111 282-555 (571)
421 COG4257 Vgb Streptogramin lyas 95.3 2.7 5.9E-05 42.6 18.7 210 883-1110 63-273 (353)
422 KOG4499 Ca2+-binding protein R 95.3 1.4 3.1E-05 43.3 16.4 46 846-891 217-263 (310)
423 PF12894 Apc4_WD40: Anaphase-p 95.2 0.07 1.5E-06 38.4 5.7 32 407-438 10-41 (47)
424 KOG2377 Uncharacterized conser 95.0 1.8 3.8E-05 47.0 17.5 156 302-487 32-187 (657)
425 PF12234 Rav1p_C: RAVE protein 94.8 0.8 1.7E-05 53.6 16.1 112 455-574 31-155 (631)
426 PHA03098 kelch-like protein; P 94.7 1.2 2.7E-05 53.1 18.5 151 511-664 343-513 (534)
427 PF10168 Nup88: Nuclear pore c 94.7 9.1 0.0002 46.5 24.9 30 840-869 84-113 (717)
428 TIGR03118 PEPCTERM_chp_1 conse 94.6 6.7 0.00014 40.9 21.5 212 455-673 24-289 (336)
429 COG3823 Glutamine cyclotransfe 94.5 2 4.4E-05 41.6 14.9 102 851-957 55-161 (262)
430 PRK13684 Ycf48-like protein; P 94.3 11 0.00023 41.7 31.8 157 881-1046 172-330 (334)
431 PHA03098 kelch-like protein; P 94.2 1.9 4E-05 51.6 18.2 194 418-622 293-515 (534)
432 PF12234 Rav1p_C: RAVE protein 94.0 1.4 3.1E-05 51.6 15.7 123 876-1002 24-155 (631)
433 TIGR03118 PEPCTERM_chp_1 conse 93.9 9.3 0.0002 39.9 20.8 210 841-1058 23-290 (336)
434 KOG1898 Splicing factor 3b, su 93.8 22 0.00047 43.6 35.8 103 846-953 939-1047(1205)
435 KOG2280 Vacuolar assembly/sort 93.7 3.9 8.4E-05 47.7 17.9 182 862-1058 65-257 (829)
436 TIGR02604 Piru_Ver_Nterm putat 93.5 2.1 4.6E-05 48.0 16.0 149 882-1036 14-202 (367)
437 PHA02790 Kelch-like protein; P 93.1 3.8 8.2E-05 47.9 17.9 183 850-1049 270-472 (480)
438 TIGR02604 Piru_Ver_Nterm putat 92.6 3.1 6.8E-05 46.7 15.7 147 926-1092 15-205 (367)
439 PLN00033 photosystem II stabil 92.6 21 0.00046 40.1 27.8 152 884-1044 241-396 (398)
440 KOG3630 Nuclear pore complex, 92.5 1.2 2.5E-05 54.0 12.0 146 454-605 101-260 (1405)
441 KOG1916 Nuclear protein, conta 92.3 0.041 8.9E-07 63.8 0.2 228 860-1100 110-374 (1283)
442 KOG2247 WD40 repeat-containing 92.2 0.029 6.3E-07 60.7 -1.1 242 776-1055 38-288 (615)
443 PHA02790 Kelch-like protein; P 92.2 5.1 0.00011 46.8 17.2 184 419-620 271-472 (480)
444 PF03022 MRJP: Major royal jel 91.8 18 0.00039 38.7 19.5 190 843-1035 3-253 (287)
445 KOG3630 Nuclear pore complex, 91.6 1.9 4E-05 52.4 12.3 146 840-991 100-260 (1405)
446 PF10313 DUF2415: Uncharacteri 91.5 0.56 1.2E-05 32.7 4.8 33 347-379 1-35 (43)
447 KOG1916 Nuclear protein, conta 91.2 0.13 2.8E-06 60.0 2.5 197 840-1048 132-375 (1283)
448 PF14761 HPS3_N: Hermansky-Pud 91.1 12 0.00025 37.3 15.3 149 895-1047 29-214 (215)
449 PF10313 DUF2415: Uncharacteri 91.0 0.72 1.6E-05 32.1 5.0 32 882-913 1-34 (43)
450 KOG2280 Vacuolar assembly/sort 90.9 25 0.00053 41.5 19.8 166 410-586 85-257 (829)
451 PF10168 Nup88: Nuclear pore c 90.8 13 0.00029 45.1 18.9 76 975-1050 85-182 (717)
452 KOG2377 Uncharacterized conser 90.8 6.5 0.00014 42.9 14.2 143 884-1036 25-172 (657)
453 PF13449 Phytase-like: Esteras 90.6 12 0.00025 41.2 17.0 152 881-1034 19-231 (326)
454 COG5167 VID27 Protein involved 90.5 9 0.0002 42.5 15.1 150 459-618 472-632 (776)
455 smart00036 CNH Domain found in 90.2 30 0.00066 37.4 25.5 208 840-1056 42-279 (302)
456 PRK14131 N-acetylneuraminic ac 90.0 33 0.00072 38.7 20.6 40 612-653 314-353 (376)
457 PF08728 CRT10: CRT10; InterP 90.0 18 0.00039 43.2 18.3 116 410-528 102-245 (717)
458 COG4590 ABC-type uncharacteriz 89.9 1.2 2.7E-05 48.0 8.0 153 840-1002 220-385 (733)
459 PF07676 PD40: WD40-like Beta 89.8 1.3 2.9E-05 30.4 5.8 30 345-374 7-38 (39)
460 PF11725 AvrE: Pathogenicity f 89.8 41 0.00088 43.8 21.8 149 345-530 361-517 (1774)
461 PF14870 PSII_BNR: Photosynthe 89.6 33 0.00071 36.9 33.9 283 343-659 13-301 (302)
462 KOG1900 Nuclear pore complex, 89.5 22 0.00048 44.7 19.0 147 901-1048 96-273 (1311)
463 PF03022 MRJP: Major royal jel 89.4 34 0.00074 36.7 19.4 167 478-650 35-253 (287)
464 PF13449 Phytase-like: Esteras 89.3 18 0.00038 39.8 17.2 113 925-1037 20-166 (326)
465 PF02333 Phytase: Phytase; In 88.8 42 0.00092 37.1 19.2 196 893-1102 67-292 (381)
466 PF08728 CRT10: CRT10; InterP 88.6 12 0.00025 44.7 15.5 174 852-1046 49-245 (717)
467 COG1520 FOG: WD40-like repeat 88.4 49 0.0011 37.3 23.1 197 423-629 71-279 (370)
468 KOG3616 Selective LIM binding 88.4 8.1 0.00017 44.6 13.4 88 866-959 323-410 (1636)
469 TIGR03606 non_repeat_PQQ dehyd 88.1 45 0.00098 38.1 19.3 111 881-994 29-165 (454)
470 COG3823 Glutamine cyclotransfe 87.8 29 0.00064 34.0 16.9 173 469-650 58-247 (262)
471 PRK13684 Ycf48-like protein; P 87.5 50 0.0011 36.4 31.9 278 346-660 45-329 (334)
472 PF07569 Hira: TUP1-like enhan 87.3 2.7 5.8E-05 42.8 8.5 78 932-1009 18-101 (219)
473 COG5290 IkappaB kinase complex 87.2 26 0.00057 41.3 16.5 129 978-1118 250-384 (1243)
474 TIGR03548 mutarot_permut cycli 87.1 52 0.0011 36.2 21.7 109 469-580 75-199 (323)
475 COG3292 Predicted periplasmic 87.0 47 0.001 37.9 17.9 276 344-658 162-443 (671)
476 KOG1900 Nuclear pore complex, 87.0 5.9 0.00013 49.4 12.2 139 366-530 96-273 (1311)
477 KOG2063 Vacuolar assembly/sort 86.9 26 0.00057 43.0 17.5 248 778-1056 20-277 (877)
478 PF12657 TFIIIC_delta: Transcr 86.7 3.6 7.9E-05 40.2 8.8 31 409-439 86-122 (173)
479 PF02333 Phytase: Phytase; In 86.7 56 0.0012 36.2 22.7 188 469-664 70-292 (381)
480 COG4257 Vgb Streptogramin lyas 86.7 41 0.0009 34.6 22.1 188 840-1048 61-263 (353)
481 PF14781 BBS2_N: Ciliary BBSom 86.2 24 0.00052 32.1 12.5 108 888-1007 5-129 (136)
482 PF10214 Rrn6: RNA polymerase 85.8 1E+02 0.0023 38.5 29.3 173 840-1049 79-278 (765)
483 COG4590 ABC-type uncharacteriz 85.7 5.9 0.00013 43.1 10.0 163 449-623 216-391 (733)
484 PF11725 AvrE: Pathogenicity f 85.1 55 0.0012 42.7 19.2 66 975-1043 703-768 (1774)
485 COG5167 VID27 Protein involved 84.8 15 0.00034 40.7 12.7 144 893-1047 478-632 (776)
486 PLN02193 nitrile-specifier pro 84.5 89 0.0019 36.5 22.7 149 469-623 231-415 (470)
487 KOG1983 Tomosyn and related SN 84.1 18 0.00039 46.0 15.1 68 976-1051 200-268 (993)
488 KOG4460 Nuclear pore complex, 83.6 27 0.00058 39.2 13.9 41 1071-1111 167-209 (741)
489 TIGR03548 mutarot_permut cycli 83.5 75 0.0016 34.9 18.7 108 512-622 74-198 (323)
490 PRK13613 lipoprotein LpqB; Pro 83.5 75 0.0016 38.0 19.0 193 842-1041 364-576 (599)
491 TIGR03547 muta_rot_YjhT mutatr 83.2 81 0.0018 35.1 21.1 41 521-561 168-209 (346)
492 KOG2247 WD40 repeat-containing 83.2 0.41 8.9E-06 52.2 0.4 123 336-483 64-186 (615)
493 KOG4460 Nuclear pore complex, 82.5 93 0.002 35.2 19.6 96 840-958 103-202 (741)
494 PF14781 BBS2_N: Ciliary BBSom 81.8 41 0.00089 30.7 13.0 117 783-920 9-133 (136)
495 PF07569 Hira: TUP1-like enhan 81.6 8.1 0.00017 39.4 9.0 73 354-440 18-97 (219)
496 PF07250 Glyoxal_oxid_N: Glyox 81.5 44 0.00095 34.5 14.1 138 524-664 49-199 (243)
497 PRK13613 lipoprotein LpqB; Pro 81.5 1.3E+02 0.0028 36.1 20.4 153 883-1047 364-537 (599)
498 PF12768 Rax2: Cortical protei 81.0 34 0.00074 36.3 13.5 105 476-582 15-130 (281)
499 PF14761 HPS3_N: Hermansky-Pud 80.6 66 0.0014 32.2 14.2 111 843-957 20-166 (215)
500 PRK13615 lipoprotein LpqB; Pro 80.5 1.3E+02 0.0028 35.6 22.0 152 885-1048 337-503 (557)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-69 Score=535.85 Aligned_cols=490 Identities=20% Similarity=0.313 Sum_probs=410.9
Q ss_pred hHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc---HHHHHHHhhcccHHHHHHHhcCcccccccchhhHHHHHHHHHHH
Q 001160 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKY 81 (1134)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~ 81 (1134)
+-|++||+.|+|+.+||.+|+.+||.|||+.++ .+.|.++|+.|+|+.++..+..+ .+++....+++.|++++|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i-~~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRI-SFEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhc-cCcchhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999986 89999999999999999999876 34445567789999999999
Q ss_pred HHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCCchhHHHHHHHHHHhhcccCccccccC
Q 001160 82 LEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKL 161 (1134)
Q Consensus 82 lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~ 161 (1134)
||++..|....|+.+||+.+.++ -++.+++++|+.-+..++.....+...-......|..|+++|+++|||++|
T Consensus 96 LEf~k~~~is~al~~l~~~~~~l-r~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~il----- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYL-RKNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNIL----- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhh-hhhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhc-----
Confidence 99999999999999999999999 678999999998766554432222222223577899999999999999998
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhhCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 001160 162 SFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPFQ 241 (1134)
Q Consensus 162 ~~~~~p~~rL~~ll~q~~~~Q~~~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~f~ 241 (1134)
+|++||++||+||++||+++|+|||+ .+..|||.||.|++ .++ |. ++.+++.+|+
T Consensus 170 ----lP~rRLehLl~qAv~~Q~d~cvyhns-ldsvsll~Dh~c~~------------~qi----p~-qt~qil~~ht--- 224 (519)
T KOG0293|consen 170 ----LPKRRLEHLLEQAVKYQRDSCVYHNS-LDSVSLLSDHFCGR------------LQI----PS-QTWQILQDHT--- 224 (519)
T ss_pred ----CChHHHHHHHHHHHHHHHhHhHHhcc-cchhhhhhhcccCc------------ccC----Cc-hhhhhHhhCC---
Confidence 99999999999999999999999995 55589999999999 333 33 4444444443
Q ss_pred CCCCCCCccccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCcccccCCChhhhhhhcccCCcceeEee
Q 001160 242 PVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFA 321 (1134)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s 321 (1134)
T Consensus 225 -------------------------------------------------------------------------------- 224 (519)
T KOG0293|consen 225 -------------------------------------------------------------------------------- 224 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccc
Q 001160 322 GVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQN 401 (1134)
Q Consensus 322 ~~g~~~~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1134)
++||.+.||++|+ +||+++.|.+..||++.....+. + .
T Consensus 225 -------------------------dEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~k-----l-----------~ 262 (519)
T KOG0293|consen 225 -------------------------DEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFK-----L-----------K 262 (519)
T ss_pred -------------------------CcEEEEEEcCCCe-eEeeccCCceEEEEEEecCccee-----e-----------e
Confidence 4899999999998 79999999999999987544321 1 1
Q ss_pred cccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEE
Q 001160 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 402 ~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~i 481 (1134)
..+.+|..+|..+.||||.++|++|+.+..+.+||+.+|....... .+|...+.+++|.|||. .+++|+.|+++..
T Consensus 263 ~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~ 338 (519)
T KOG0293|consen 263 KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIM 338 (519)
T ss_pred eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEE
Confidence 1277999999999999999999999999999999999998776432 24668899999999999 7999999999999
Q ss_pred EECCCCeeeEEecCCC-CCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEe
Q 001160 482 WDVVAGRKQYTFEGHE-APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1134)
Q Consensus 482 wd~~~~~~~~~~~~h~-~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1134)
||+ +|..+..+++-. ..|.++++++ ||.++++.+.|..|++++.++...+. +.....+|++++.|.|++++++.-
T Consensus 339 wdl-Dgn~~~~W~gvr~~~v~dlait~--Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 339 WDL-DGNILGNWEGVRDPKVHDLAITY--DGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred ecC-CcchhhcccccccceeEEEEEcC--CCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEEc
Confidence 995 566666666643 5689999876 45999999999999999988765553 334567899999999999998876
Q ss_pred eCCCCCCcEEEEeCCCCeeEEEecCccCcc--eEEEEEe-CCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcce
Q 001160 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRS--LGVVQFD-TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (1134)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~--v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1134)
. +..+++||++..+.++.+.||..+. |.++ |. .+..++++|++|+.|+||+..+++++..+.+|. ..|++
T Consensus 415 ~----~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSC-Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs--~~vNc 487 (519)
T KOG0293|consen 415 Q----DQEIHLWDLEENKLVRKYFGHKQGHFIIRSC-FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHS--KTVNC 487 (519)
T ss_pred c----cCeeEEeecchhhHHHHhhcccccceEEEec-cCCCCcceEEecCCCceEEEEEccCCceeEeecCCc--ceeeE
Confidence 4 6679999999999999999997643 3433 44 344789999999999999999999999999885 48999
Q ss_pred EEEcc-CCCEEEEEeCCCcEEEEECCC
Q 001160 638 LRFNK-EGSLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 638 ~~~s~-d~~~l~~~~~dg~i~iw~~~~ 663 (1134)
++|+| +..++|++++||+||||....
T Consensus 488 VswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 488 VSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EecCCCCHHHhhccCCCCeEEEecCCc
Confidence 99999 667899999999999998754
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.3e-63 Score=476.02 Aligned_cols=488 Identities=19% Similarity=0.297 Sum_probs=409.4
Q ss_pred hHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc----HHHHHHHhhcccHHHHHHHhcCcccccccchhhHHHHHHHHHH
Q 001160 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN----MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQK 80 (1134)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~ 80 (1134)
+.||||||.|||+|+.++++.++||+|++++++ ++-|.++|.+|+||.++..+++| +++.+-+..||||.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHHH
Confidence 468999999999999999999999999999998 88999999999999999999988 66777889999999
Q ss_pred HHHHHhccCHHHHHHHHHhc--cccccccCHHHHHHHHHhhcccCccchhhhccCCCchhHHHHHHHHHHhhcccCcccc
Q 001160 81 YLEALDRQDRAKAVEILVKD--LKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFR 158 (1134)
Q Consensus 81 ~lEll~~~~~~~A~~~l~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~ 158 (1134)
.|||+|.++...|..+||+. +.-++..++++|-+|+.||..+.++..|.+.+ .+.++.|..+.+.|...+.-
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V----- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV----- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE-----
Confidence 99999999999999999985 66666779999999999999999999987654 24566667777767655543
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHHHhhCCCCCCCCCcc-ccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCC
Q 001160 159 DKLSFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIK-TLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAH 237 (1134)
Q Consensus 159 ~~~~~~~~p~~rL~~ll~q~~~~Q~~~~~~~~~~~~~~-~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 237 (1134)
+||+||..||+||++||+.+.+.+ |+.. +||...-..+
T Consensus 155 -------VppSRLlaLlGQaLKWQqHQGLLP---PGt~iDLFRGkAA~K------------------------------- 193 (508)
T KOG0275|consen 155 -------VPPSRLLALLGQALKWQQHQGLLP---PGTTIDLFRGKAAMK------------------------------- 193 (508)
T ss_pred -------cChHHHHHHHHHHhhhHhhcCCCC---CCceeeeccchhhhh-------------------------------
Confidence 899999999999999999999987 4432 5554222211
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCcccccCCChhhhhhhcccCCcce
Q 001160 238 GPFQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDE 317 (1134)
Q Consensus 238 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (1134)
+ .++|.+|......|+|++++.
T Consensus 194 -~-------------------~~Ee~~Pt~l~r~IKFg~KSh-------------------------------------- 215 (508)
T KOG0275|consen 194 -D-------------------QEEERYPTQLARSIKFGQKSH-------------------------------------- 215 (508)
T ss_pred -h-------------------hHhhhchHHhhhheecccccc--------------------------------------
Confidence 1 244455666566666666554
Q ss_pred eEeeCCCCCCccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccc
Q 001160 318 VSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM 397 (1134)
Q Consensus 318 v~~s~~g~~~~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 397 (1134)
+.|..|||||+ +|++|+.||.|.+||+.+|+......+..
T Consensus 216 -------------------------------~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQA-------- 255 (508)
T KOG0275|consen 216 -------------------------------VECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQA-------- 255 (508)
T ss_pred -------------------------------hhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhh--------
Confidence 55889999998 78999999999999999998765322210
Q ss_pred cccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEe-cccCCeeEEEEecCCCcEEEEEEcCC
Q 001160 398 PLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1134)
Q Consensus 398 ~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~d~~~~~l~sg~~d 476 (1134)
...+.-+.++|.|+.||.|...||+|+.||.|++|.+.+|.+++ .|. +|...|+|+.|+.|+. .+++++.|
T Consensus 256 ---qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR---rFdrAHtkGvt~l~FSrD~S--qiLS~sfD 327 (508)
T KOG0275|consen 256 ---QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR---RFDRAHTKGVTCLSFSRDNS--QILSASFD 327 (508)
T ss_pred ---hcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH---HhhhhhccCeeEEEEccCcc--hhhccccc
Confidence 11244588999999999999999999999999999999999988 444 8999999999999999 69999999
Q ss_pred CcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC--CCcEEEEEECCCC-
Q 001160 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADG- 553 (1134)
Q Consensus 477 ~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~~- 553 (1134)
.++++.-+.+|++++.|+||...|+...|.+ +|..+++++.||+|++|+..+.++..++... ...|.++..-|.+
T Consensus 328 ~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~--dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnp 405 (508)
T KOG0275|consen 328 QTVRIHGLKSGKCLKEFRGHSSYVNEATFTD--DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNP 405 (508)
T ss_pred ceEEEeccccchhHHHhcCccccccceEEcC--CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCC
Confidence 9999999999999999999999999999966 5599999999999999999999998877654 4478888777754
Q ss_pred CEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCcc--CcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC
Q 001160 554 TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR--KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1134)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1134)
..+++|. ..+++++.++. |+.++++.... ++..-+++.+|.|.++++.++|+.++.|.+.+|++..++..|..
T Consensus 406 eh~iVCN----rsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk 480 (508)
T KOG0275|consen 406 EHFIVCN----RSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK 480 (508)
T ss_pred ceEEEEc----CCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc
Confidence 5667774 36779999875 78888886542 33566778999999999999999999999999999999987754
Q ss_pred CCCcceEEEccCCCEEEEEeCCCcEEEEE
Q 001160 632 LPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1134)
Q Consensus 632 ~~~v~~~~~s~d~~~l~~~~~dg~i~iw~ 660 (1134)
.+..++-+|..+.+|+-+.||.+++|.
T Consensus 481 --dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 --DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred --cccccccCcccchhhhhcccchhhhcC
Confidence 678899999999999999999999995
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.4e-58 Score=489.42 Aligned_cols=576 Identities=19% Similarity=0.247 Sum_probs=478.4
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEEccCcccc-ccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCC
Q 001160 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERL-AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1134)
Q Consensus 352 v~~spdg~~llasg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg 430 (1134)
++||++|+ +|++.. ...|.+-|+.++... .. .-......+++++.+||+.+|++++...
T Consensus 25 ~~~s~nG~-~L~t~~-~d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTAC-GDRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEec-CceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 89999998 566654 346888999998763 21 1234567899999999999999999999
Q ss_pred eEEEEEcCCCCccceeeEEec-ccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccC
Q 001160 431 IVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 509 (1134)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~ 509 (1134)
.+++|++.+++.++ .+.. |.+||.-++|+|.+. .+++|+.|+.+++||+..+.+.+.|+||.+.|.++.|+|..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998777 5555 999999999999997 89999999999999999999999999999999999999998
Q ss_pred CccEEEEEecCCeEEEEEccCCCc-eeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccC
Q 001160 510 SIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588 (1134)
Q Consensus 510 ~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 588 (1134)
....|++|..|+++++||+..... ...+..|.+.|++++|++|+..+++++. |..+.+||+.+.+..++++...
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 777899999999999999996554 7788899999999999999999999986 7789999998877777777655
Q ss_pred cceEEEEEeCC-----CCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCC
Q 001160 589 RSLGVVQFDTT-----RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 589 ~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~ 663 (1134)
.+-++.+-++ +.+++++|.+|.+++||.+++++......... ..+..+...+....++..+.|..+.++|.++
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~-~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDS-EEIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCc-hhhhcceeccccCceEEEEccceEEEEEccc
Confidence 4677777777 67999999999999999999988776654432 2366666666666677788899999999988
Q ss_pred chhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccc
Q 001160 664 GVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAED 743 (1134)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1134)
. ++.+.+.|....+.. +.++| ..+....++..
T Consensus 313 l-~i~k~ivG~ndEI~D------------m~~lG-----------------------------------~e~~~laVATN 344 (775)
T KOG0319|consen 313 L-TIVKQIVGYNDEILD------------MKFLG-----------------------------------PEESHLAVATN 344 (775)
T ss_pred c-EEehhhcCCchhhee------------eeecC-----------------------------------CccceEEEEeC
Confidence 8 777777776655432 12221 11233445555
Q ss_pred cCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccC
Q 001160 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP 823 (1134)
Q Consensus 744 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~ 823 (1134)
...+++++..+..+. .+ .+|...|.++....+|-+|++++.|.++++|.++.+.
T Consensus 345 s~~lr~y~~~~~~c~------ii--~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~------------------ 398 (775)
T KOG0319|consen 345 SPELRLYTLPTSYCQ------II--PGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNC------------------ 398 (775)
T ss_pred CCceEEEecCCCceE------EE--eCchhheeeeeecccCcEEEEecCCceEEEEEecCCc------------------
Confidence 699999988764443 22 3599999999988888999999999999999873211
Q ss_pred CCCCccccccCCCCCCCCceEEEEeccCC-CEEEEEe-CCeEEEEECCCCeE---------EEEecCCCCceEEEEEcCC
Q 001160 824 PSGTLMTNDINESKPTEESAACIALSKND-SYVMSAS-GGKVSLFNMMTFKV---------MTMFMSPPPAATFLAFHPQ 892 (1134)
Q Consensus 824 ~~~~~~~~~~~~~~h~~~~i~~~~~s~dg-~~la~~s-dg~i~vwd~~~~~~---------~~~~~~~~~~i~~l~~s~~ 892 (1134)
+......... .| ...|.+++++..+ .++++++ |.++++|++...+. ..+...|...|+|++++|
T Consensus 399 -~~~~~~a~~~--gH-~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~- 473 (775)
T KOG0319|consen 399 -SKSLCVAQAN--GH-TNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP- 473 (775)
T ss_pred -chhhhhhhhc--cc-ccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-
Confidence 1111111122 38 9999999998765 4788888 99999999976221 113346999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCC
Q 001160 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS 972 (1134)
Q Consensus 893 ~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~ 972 (1134)
+.+++|||+.|++.+||+++......+|.||...|+++.|+|..+.|+|+|.|++|+||.+++.. +++.+.||.
T Consensus 474 ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS-----ClkT~eGH~- 547 (775)
T KOG0319|consen 474 NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS-----CLKTFEGHT- 547 (775)
T ss_pred CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccce-----eeeeecCcc-
Confidence 89999999999999999999999999999999999999999999999999999999999999988 778889998
Q ss_pred CCcCceEEEECCCCcEEEE-EECCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCc
Q 001160 973 PLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1049 (1134)
Q Consensus 973 ~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~ 1049 (1134)
..|..+.|-.+|+.|++ ++||-+++|++ +..|...+ ++|...|++++.++++.+++||+.||.|.+|.=.|.
T Consensus 548 --~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl---D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 548 --SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL---DAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred --ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh---hhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 58999999999999999 68999999999 77787765 677999999999999999999999999999976553
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.2e-54 Score=459.38 Aligned_cols=570 Identities=12% Similarity=0.210 Sum_probs=469.7
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe
Q 001160 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1134)
Q Consensus 414 i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 493 (1134)
++|+++|+.|++...|. |.+-|+.++...... .-..-...+++++..||++ +|++++....+++|++.+|+.++.+
T Consensus 25 ~~~s~nG~~L~t~~~d~-Vi~idv~t~~~~l~s-~~~ed~d~ita~~l~~d~~--~L~~a~rs~llrv~~L~tgk~irsw 100 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDR-VIIIDVATGSIALPS-GSNEDEDEITALALTPDEE--VLVTASRSQLLRVWSLPTGKLIRSW 100 (775)
T ss_pred eeECCCCCEEEEecCce-EEEEEccCCceeccc-CCccchhhhheeeecCCcc--EEEEeeccceEEEEEcccchHhHhH
Confidence 89999999999997765 888899988753111 1223556799999999998 8999999999999999999999999
Q ss_pred cC-CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCE--EEEEeeCCCCCCcEE
Q 001160 494 EG-HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR--LFSCGTSKEGESHLV 570 (1134)
Q Consensus 494 ~~-h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~~~~~~~~i~ 570 (1134)
+. |.+||.-++|+|.+ ..+++|+.|+.+++||+....+...+.+|++.|.++.|.|+-++ |+++. .|++++
T Consensus 101 Ka~He~Pvi~ma~~~~g--~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~----~D~~v~ 174 (775)
T KOG0319|consen 101 KAIHEAPVITMAFDPTG--TLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGA----TDGTVR 174 (775)
T ss_pred hhccCCCeEEEEEcCCC--ceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecC----CCceEE
Confidence 98 99999999998876 89999999999999999999999999999999999999998765 44554 488999
Q ss_pred EEeCCCCee-EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccC-----C
Q 001160 571 EWNESEGAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE-----G 644 (1134)
Q Consensus 571 ~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d-----~ 644 (1134)
+||+.+... +..+..|.. .|+++.|++|+..++++|.|..+.+||+...+...+++... .+-++.+-++ |
T Consensus 175 vwnl~~~~tcl~~~~~H~S-~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye---~~E~vv~l~~~~~~~~ 250 (775)
T KOG0319|consen 175 VWNLNDKRTCLHTMILHKS-AVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYE---SLESVVRLREELGGKG 250 (775)
T ss_pred EEEcccCchHHHHHHhhhh-heeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhh---heeeEEEechhcCCcc
Confidence 999996654 778888887 89999999999999999999999999998888777776543 3566677676 6
Q ss_pred CEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCc
Q 001160 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 724 (1134)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1134)
.++++++.+|.+++||.+++ ...........+-
T Consensus 251 ~~~~TaG~~g~~~~~d~es~-~~~~~~~~~~~~e---------------------------------------------- 283 (775)
T KOG0319|consen 251 EYIITAGGSGVVQYWDSESG-KCVYKQRQSDSEE---------------------------------------------- 283 (775)
T ss_pred eEEEEecCCceEEEEecccc-hhhhhhccCCchh----------------------------------------------
Confidence 79999999999999999988 4443332221000
Q ss_pred cCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEe-cCCcceEEeeccCeeEEeeccc
Q 001160 725 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYT-NSGLSLLALASNAVHKLWKWQR 803 (1134)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~dg~v~vw~~~~ 803 (1134)
...........+.++...+.++.++|.++......+ .+..+.|..+.|- |+.+.|+++++.+.+++|++.+
T Consensus 284 -~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i-------vG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~ 355 (775)
T KOG0319|consen 284 -IDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI-------VGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPT 355 (775)
T ss_pred -hhcceeccccCceEEEEccceEEEEEccccEEehhh-------cCCchhheeeeecCCccceEEEEeCCCceEEEecCC
Confidence 011122334566777788899999987764333222 3467888988875 6778899999999999997643
Q ss_pred ccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCC----eEEEEec
Q 001160 804 TERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF----KVMTMFM 878 (1134)
Q Consensus 804 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~----~~~~~~~ 878 (1134)
.. +. .+++ | ...|.++....+|-+||+|+ |.++++|.++.+ -++....
T Consensus 356 ~~----------------------c~--ii~G--H-~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~ 408 (775)
T KOG0319|consen 356 SY----------------------CQ--IIPG--H-TEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQAN 408 (775)
T ss_pred Cc----------------------eE--EEeC--c-hhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhc
Confidence 11 11 2455 8 99999999888889999999 999999988543 2455677
Q ss_pred CCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceE-----E----EEecCcccceEEEEEecCCCEEEEEcCCCcEE
Q 001160 879 SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV-----K----TKLKGHQNRITGLAFSPTLNALVSSGADAQLC 949 (1134)
Q Consensus 879 ~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~-----~----~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~ 949 (1134)
+|.+.|.+++++.....++++++.|+++++|++...+. . .+-..|...|.+++++|+.+++||||.|.+.+
T Consensus 409 gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaK 488 (775)
T KOG0319|consen 409 GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAK 488 (775)
T ss_pred ccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccccccee
Confidence 89999999999986678999999999999999976221 1 12357999999999999999999999999999
Q ss_pred EEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEcc
Q 001160 950 MWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSC 1027 (1134)
Q Consensus 950 iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~ 1027 (1134)
||+++... ......||. .+|.++.|+|..+.+++ ++|++|++|.+ +..|++++ .||...|..+.|-.
T Consensus 489 iW~le~~~-----l~~vLsGH~---RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~---eGH~~aVlra~F~~ 557 (775)
T KOG0319|consen 489 IWDLEQLR-----LLGVLSGHT---RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF---EGHTSAVLRASFIR 557 (775)
T ss_pred eecccCce-----EEEEeeCCc---cceEEEEeccccceeEeccCCceEEEEEeccceeeeee---cCccceeEeeeeee
Confidence 99999655 677788888 58999999999999999 68999999999 88998886 56799999999999
Q ss_pred CCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCC
Q 001160 1028 DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1028 dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~ 1101 (1134)
+|+.|++++.||-|++|++.++++++++..|. ..+-+++-+| +..+++||+.||.|.+|.=.+
T Consensus 558 ~~~qliS~~adGliKlWnikt~eC~~tlD~H~----------DrvWaL~~~~-~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 558 NGKQLISAGADGLIKLWNIKTNECEMTLDAHN----------DRVWALSVSP-LLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred CCcEEEeccCCCcEEEEeccchhhhhhhhhcc----------ceeEEEeecC-ccceeEecCCCeEEEEeecCc
Confidence 99999999999999999999999999998663 5556777777 567999999999999996444
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.8e-50 Score=414.23 Aligned_cols=569 Identities=14% Similarity=0.208 Sum_probs=440.0
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCC
Q 001160 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1134)
Q Consensus 351 ~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg 430 (1134)
-+.-.|.|+.++.+. ...|.+-++++..... ++.+|..+++-..|||.|-|+|+|...|
T Consensus 23 ~ig~dpkgd~ilY~n--Gksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG 81 (603)
T KOG0318|consen 23 IIGGDPKGDNILYTN--GKSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSG 81 (603)
T ss_pred EeccCCCCCeEEEeC--CCEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcC
Confidence 345567788787765 4578888888765433 3778999999999999999999999999
Q ss_pred eEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEc--CCC--cEEEEECCCCeeeEEecCCCCCeEEEEee
Q 001160 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG--DDK--MIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1134)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~--~d~--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 506 (1134)
.|+|||....+.+ ...+++...++|..++|+.|+++ |+..+ .++ .+.+|| +|..+..+.||...|+++.|-
T Consensus 82 ~vRIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~D--SG~SvGei~GhSr~ins~~~K 156 (603)
T KOG0318|consen 82 KVRIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWD--SGNSVGEITGHSRRINSVDFK 156 (603)
T ss_pred cEEEEeccCccee-eeeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEec--CCCccceeeccceeEeeeecc
Confidence 9999998764433 23367778899999999999995 44443 333 455565 888899999999999999999
Q ss_pred ccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEec--
Q 001160 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS-- 584 (1134)
Q Consensus 507 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-- 584 (1134)
|..+ -++++|++|++|.+|+-.-.+-...+..|..-|.++.|+|||.++++++. |+.+.+||-.+|+.+..+.
T Consensus 157 psRP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~ 231 (603)
T KOG0318|consen 157 PSRP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDS 231 (603)
T ss_pred CCCc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCC
Confidence 8876 68999999999999976555555667778889999999999999999985 8889999999999999998
Q ss_pred -CccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCC-CCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001160 585 -GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL-PASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 585 -~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
+|.+ .|.+++|+||+..+++++.|.+++|||+.+.+++.++...... ..-..+.|. ...|++.+-+|+|.+++..
T Consensus 232 ~aHkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~ 308 (603)
T KOG0318|consen 232 DAHKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPS 308 (603)
T ss_pred CCccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEeccc
Confidence 6666 8999999999999999999999999999999999998765431 112234454 5689999999999999988
Q ss_pred CchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCccccccccccccc
Q 001160 663 DGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAE 742 (1134)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1134)
.. ...+.+.+
T Consensus 309 d~-~~~~~i~G--------------------------------------------------------------------- 318 (603)
T KOG0318|consen 309 DP-SVLKVISG--------------------------------------------------------------------- 318 (603)
T ss_pred CC-Chhheecc---------------------------------------------------------------------
Confidence 77 24443333
Q ss_pred ccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCccccc
Q 001160 743 DVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQ 822 (1134)
Q Consensus 743 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~ 822 (1134)
|...|+++..++|+++|++++.||.|.-|+...
T Consensus 319 ----------------------------HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~------------------- 351 (603)
T KOG0318|consen 319 ----------------------------HNKSITALTVSPDGKTIYSGSYDGHINSWDSGS------------------- 351 (603)
T ss_pred ----------------------------cccceeEEEEcCCCCEEEeeccCceEEEEecCC-------------------
Confidence 667899999999999999999999999997643
Q ss_pred CCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEE--ecCCCCceEEEEEcCCCCcEEEEE
Q 001160 823 PPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTM--FMSPPPAATFLAFHPQDNNIIAIG 900 (1134)
Q Consensus 823 ~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~~lasg 900 (1134)
|..-. +.+..| ...|.+++.+..+.++-++-|.++++.++........ ++-.. .-.+++..+ ++.+++.+
T Consensus 352 ---g~~~~--~~g~~h-~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~-QP~~lav~~-d~~~avv~ 423 (603)
T KOG0318|consen 352 ---GTSDR--LAGKGH-TNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGS-QPKGLAVLS-DGGTAVVA 423 (603)
T ss_pred ---ccccc--cccccc-cceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCC-CceeEEEcC-CCCEEEEE
Confidence 22222 333448 9999999998888877777799999999865433222 12122 233888888 77677666
Q ss_pred eCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEE
Q 001160 901 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 980 (1134)
Q Consensus 901 ~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 980 (1134)
+.++.+.+=|... +.... -.-...+++++|++..+|.|+.|+.|+||.+..++......... |. .+++.+
T Consensus 424 ~~~~iv~l~~~~~---~~~~~-~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~---h~---a~iT~v 493 (603)
T KOG0318|consen 424 CISDIVLLQDQTK---VSSIP-IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLE---HR---AAITDV 493 (603)
T ss_pred ecCcEEEEecCCc---ceeec-cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeec---cc---CCceEE
Confidence 6665544433322 22222 22346789999999999999999999999999877433322222 22 578999
Q ss_pred EECCCCcEEEEE-ECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcc
Q 001160 981 QFHNDQTHLLVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA 1059 (1134)
Q Consensus 981 ~fspdg~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~ 1059 (1134)
+||||+.+||++ ..+.|.+||+..+.... ..-.-|...|.+++|||+.++||||+.|.+|.||+++.....-.+..
T Consensus 494 aySpd~~yla~~Da~rkvv~yd~~s~~~~~-~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ikn-- 570 (603)
T KOG0318|consen 494 AYSPDGAYLAAGDASRKVVLYDVASREVKT-NRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKN-- 570 (603)
T ss_pred EECCCCcEEEEeccCCcEEEEEcccCceec-ceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecc--
Confidence 999999999997 57899999995554422 22234689999999999999999999999999999998766544332
Q ss_pred cccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecC
Q 001160 1060 YIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1060 ~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
+|. ..+..+.|. |...+++.+.|-+|++|.+.
T Consensus 571 -----AH~--~gVn~v~wl--de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 571 -----AHL--GGVNSVAWL--DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred -----ccc--cCceeEEEe--cCceEEeccCcceeEEeccc
Confidence 223 235567776 56899999999999999874
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.9e-50 Score=426.82 Aligned_cols=568 Identities=16% Similarity=0.231 Sum_probs=441.6
Q ss_pred ecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCE
Q 001160 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 343 l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
+.+...|++++.||+|. +|++-...|...+-++.....++... -+.+|.|+.|||||++
T Consensus 52 ~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~--------------------fk~~v~~i~fSPng~~ 110 (893)
T KOG0291|consen 52 LETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFN--------------------FKRGVGAIKFSPNGKF 110 (893)
T ss_pred eecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEe--------------------ecCccceEEECCCCcE
Confidence 34788999999999997 66667778888888887766665422 3568999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCc-----cceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee--eEEecC
Q 001160 423 LGVAFSKHIVHLYTYNPTGE-----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK--QYTFEG 495 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~--~~~~~~ 495 (1134)
+|+|.. +.+.||....... .....++.+|...|.++.|+.|.+ +|++|+.|.++++|++...+. .+.+.+
T Consensus 111 fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~g 187 (893)
T KOG0291|consen 111 FAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYALNG 187 (893)
T ss_pred EEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceEeccC
Confidence 999854 5699999865432 233446678999999999999999 899999999999999987665 567889
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccC-----------------------CCc-----------eeEecCCC
Q 001160 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-----------------------LGS-----------RVDYDAPG 541 (1134)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~-----------------------~~~-----------~~~~~~~~ 541 (1134)
|.+.|-++-|..+. ..+++.+.||.+.+|.... ++. +.-+....
T Consensus 188 Hkd~VvacfF~~~~--~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~ 265 (893)
T KOG0291|consen 188 HKDYVVACFFGANS--LDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNS 265 (893)
T ss_pred CCcceEEEEeccCc--ceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccc
Confidence 99999999886654 7899999999999997761 111 01122233
Q ss_pred CcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCC
Q 001160 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNM 620 (1134)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 620 (1134)
..+++.+|++..+.|+++.. .|...+|.+....+++.+..... .|..++|+..|.+++.|+ .-|.+.+|+..+.
T Consensus 266 ~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis~~-~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE 340 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSISDQ-KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE 340 (893)
T ss_pred cceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeecccc-eeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence 68999999999999999875 66789999999999999988766 899999999999999977 4589999999887
Q ss_pred eeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCc
Q 001160 621 NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPAS 700 (1134)
Q Consensus 621 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1134)
.-+...++| ...+.+++++|||+++|+|++||.|+|||...+ -++.++.
T Consensus 341 sYVlKQQgH--~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~vTFt---------------------------- 389 (893)
T KOG0291|consen 341 SYVLKQQGH--SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCFVTFT---------------------------- 389 (893)
T ss_pred ceeeecccc--ccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEEEEec----------------------------
Confidence 766666655 568999999999999999999999999999877 2222222
Q ss_pred ccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEE
Q 001160 701 NVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIY 780 (1134)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 780 (1134)
+ |...|+.+.|
T Consensus 390 -------------------------------------------------------------------e--Hts~Vt~v~f 400 (893)
T KOG0291|consen 390 -------------------------------------------------------------------E--HTSGVTAVQF 400 (893)
T ss_pred -------------------------------------------------------------------c--CCCceEEEEE
Confidence 2 7788999999
Q ss_pred ecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-
Q 001160 781 TNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS- 859 (1134)
Q Consensus 781 s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s- 859 (1134)
+..|+.+++.+-||+|+.||+.. ....+..... - .....|++..|.|..+..|+
T Consensus 401 ~~~g~~llssSLDGtVRAwDlkR----------------------YrNfRTft~P--~-p~QfscvavD~sGelV~AG~~ 455 (893)
T KOG0291|consen 401 TARGNVLLSSSLDGTVRAWDLKR----------------------YRNFRTFTSP--E-PIQFSCVAVDPSGELVCAGAQ 455 (893)
T ss_pred EecCCEEEEeecCCeEEeeeecc----------------------cceeeeecCC--C-ceeeeEEEEcCCCCEEEeecc
Confidence 99999999999999999998742 1111111110 1 55678899999999999998
Q ss_pred C-CeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc-eEEEEecCcccceEEEEEecCCC
Q 001160 860 G-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQNRITGLAFSPTLN 937 (1134)
Q Consensus 860 d-g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~-~~~~~l~~h~~~i~~l~~s~d~~ 937 (1134)
| -.|.||++++|+++-.+.||.++|.+++|+| .+..||+|++|.+|++||+-.. ..+.++. +...+.+++|+|||+
T Consensus 456 d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~ 533 (893)
T KOG0291|consen 456 DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGK 533 (893)
T ss_pred ceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCC
Confidence 5 5699999999999999999999999999999 8999999999999999998754 3345555 677899999999999
Q ss_pred EEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCC
Q 001160 938 ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALP 1017 (1134)
Q Consensus 938 ~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~ 1017 (1134)
.||++..||.|.+||.+.+... ....+.. =..++.+ ....+ ........
T Consensus 534 elaVaTldgqItf~d~~~~~q~-----~~Idgrk-----------------D~~~gR~-------~~D~~--ta~~sa~~ 582 (893)
T KOG0291|consen 534 ELAVATLDGQITFFDIKEAVQV-----GSIDGRK-----------------DLSGGRK-------ETDRI--TAENSAKG 582 (893)
T ss_pred eEEEEEecceEEEEEhhhceee-----ccccchh-----------------hcccccc-------cccee--ehhhcccC
Confidence 9999999999999999876532 1222211 0110000 00000 01111225
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccc---------------cc-------------------
Q 001160 1018 APISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI---------------PT------------------- 1063 (1134)
Q Consensus 1018 ~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~---------------~~------------------- 1063 (1134)
...+.+++|+||.++++|+....|++|++.++.++.+++..... +.
T Consensus 583 K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~ 662 (893)
T KOG0291|consen 583 KTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDI 662 (893)
T ss_pred CceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccc
Confidence 78999999999999999999999999999998888766632111 00
Q ss_pred ------------cccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCC
Q 001160 1064 ------------YAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1064 ------------~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~ 1101 (1134)
.-..-.+.+..+.|+| .|+-++.++..| |.||.+.+
T Consensus 663 ~lpG~~~gdlssRr~rpeIrv~sv~fsP-tgraFAaatTEG-l~IYsld~ 710 (893)
T KOG0291|consen 663 ALPGVQRGDLSSRRFRPEIRVTSVQFSP-TGRAFAAATTEG-LLIYSLDT 710 (893)
T ss_pred cCCccccCCccccccCceEEEEEEEECC-CcCeeeeecccc-eEEEecCC
Confidence 0001135677999999 678899898888 67787754
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.1e-50 Score=413.08 Aligned_cols=532 Identities=16% Similarity=0.222 Sum_probs=422.1
Q ss_pred ecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCE
Q 001160 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 343 l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
..|..+++-..|||.|. ++|+|...|+|+|||....+.+...+ +..-.++|..++|++|+++
T Consensus 56 tEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKne-----------------f~v~aG~I~Di~Wd~ds~R 117 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNE-----------------FQVLAGPIKDISWDFDSKR 117 (603)
T ss_pred ccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeee-----------------eeecccccccceeCCCCcE
Confidence 34889999999999996 89999999999999988755443323 2345678999999999999
Q ss_pred EEEEeC--C--CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCC
Q 001160 423 LGVAFS--K--HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1134)
Q Consensus 423 las~~~--d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~ 498 (1134)
|++.+. + |.+.+|| +|..+. ++.||...|++++|-|.... +++||++|++|.+|+=.--+.-.+++.|..
T Consensus 118 I~avGEGrerfg~~F~~D--SG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~Hsk 191 (603)
T KOG0318|consen 118 IAAVGEGRERFGHVFLWD--SGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREHSK 191 (603)
T ss_pred EEEEecCccceeEEEEec--CCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccccccc
Confidence 988754 3 3455555 555444 78899999999999987665 899999999999998555555667888999
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec---CCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC
Q 001160 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1134)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1134)
.|.++.|+|+ |.++++++.||++.+||-.+++....+. .|.+.|++++|+||+..+++++. |.++++||+.
T Consensus 192 FV~~VRysPD--G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIWdVs 265 (603)
T KOG0318|consen 192 FVNCVRYSPD--GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIWDVS 265 (603)
T ss_pred ceeeEEECCC--CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEEEee
Confidence 9999999886 5999999999999999999999988887 88999999999999999999986 7789999999
Q ss_pred CCeeEEEecCccC---cceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC
Q 001160 576 EGAIKRTYSGFRK---RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1134)
Q Consensus 576 ~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 652 (1134)
+.++++++..... ..+.|+ |. +..|++.+.+|.|.+++...+..+..+.+|. ..|+++..++|+++|++|+.
T Consensus 266 ~~slv~t~~~~~~v~dqqvG~l-Wq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHn--K~ITaLtv~~d~~~i~Sgsy 340 (603)
T KOG0318|consen 266 TNSLVSTWPMGSTVEDQQVGCL-WQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHN--KSITALTVSPDGKTIYSGSY 340 (603)
T ss_pred ccceEEEeecCCchhceEEEEE-Ee--CCeEEEEEcCcEEEEecccCCChhheecccc--cceeEEEEcCCCCEEEeecc
Confidence 9999999876532 134433 54 5689999999999999999999888888774 58999999999999999999
Q ss_pred CCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCccc
Q 001160 653 DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSR 732 (1134)
Q Consensus 653 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1134)
||.|.-|+..++......-++|...+.. +..
T Consensus 341 DG~I~~W~~~~g~~~~~~g~~h~nqI~~-------------------------------------------------~~~ 371 (603)
T KOG0318|consen 341 DGHINSWDSGSGTSDRLAGKGHTNQIKG-------------------------------------------------MAA 371 (603)
T ss_pred CceEEEEecCCccccccccccccceEEE-------------------------------------------------Eee
Confidence 9999999998883322222444433221 122
Q ss_pred ccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCc
Q 001160 733 LVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKA 812 (1134)
Q Consensus 733 ~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~ 812 (1134)
...+.++.++.|+++++.++.......... +.+ .....+++..+++..++....++.+.+-+..
T Consensus 372 ~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~-~~l-----g~QP~~lav~~d~~~avv~~~~~iv~l~~~~---------- 435 (603)
T KOG0318|consen 372 SESGELFTIGWDDTLRVISLKDNGYTKSEV-VKL-----GSQPKGLAVLSDGGTAVVACISDIVLLQDQT---------- 435 (603)
T ss_pred cCCCcEEEEecCCeEEEEecccCcccccce-eec-----CCCceeEEEcCCCCEEEEEecCcEEEEecCC----------
Confidence 234677888999999999886543332211 111 2233488899998777666666554443221
Q ss_pred ccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeE--EEEecCCCCceEEEEE
Q 001160 813 TANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKV--MTMFMSPPPAATFLAF 889 (1134)
Q Consensus 813 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~ 889 (1134)
.+... +. .....++|++|++..+|+|+ |+.|+||.+..... ...+..|.++|++++|
T Consensus 436 --------------~~~~~--~~----~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vay 495 (603)
T KOG0318|consen 436 --------------KVSSI--PI----GYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAY 495 (603)
T ss_pred --------------cceee--cc----ccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEE
Confidence 01111 11 55678999999999999999 99999999987553 3345679999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEEcCCceEEEE-ecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCC
Q 001160 890 HPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1134)
Q Consensus 890 s~~~~~~lasg~~dg~i~iwd~~~~~~~~~-l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~ 968 (1134)
|| |+.+||+|...+.+.+||+.+.+.... +.-|..+|.+|+|+|+..++|||+-|..|.||+++..... +....
T Consensus 496 Sp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~----i~ikn 570 (603)
T KOG0318|consen 496 SP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH----IIIKN 570 (603)
T ss_pred CC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh----eEecc
Confidence 99 999999999999999999999876433 4459999999999999999999999999999999875532 44455
Q ss_pred CCCCCCcCceEEEECCCCcEEEEEECCeEEEEeC
Q 001160 969 GRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1002 (1134)
Q Consensus 969 ~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~ 1002 (1134)
.|. ..|+.+.|-.+...+-++.|..|++|++
T Consensus 571 AH~---~gVn~v~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 571 AHL---GGVNSVAWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred ccc---cCceeEEEecCceEEeccCcceeEEecc
Confidence 666 4599999998888777799999999986
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-48 Score=417.64 Aligned_cols=584 Identities=13% Similarity=0.213 Sum_probs=444.8
Q ss_pred CCcceeEeeCCCCCCccccCcc-------ccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccc
Q 001160 313 GQSDEVSFAGVAHTPNVYSQDD-------LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHK 385 (1134)
Q Consensus 313 ~~~~~v~~s~~g~~~~~~~~~~-------~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~ 385 (1134)
.++.+++.||+|..+....-.+ ....+++.+.-+.+|.|+.|||||+ ++|.|. .+-+.||.......-...
T Consensus 56 ~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~-~fav~~-gn~lqiw~~P~~~~~~~~ 133 (893)
T KOG0291|consen 56 YNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGK-FFAVGC-GNLLQIWHAPGEIKNEFN 133 (893)
T ss_pred CceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCc-EEEEEe-cceeEEEecCcchhcccC
Confidence 4788899999998765544332 2344566666789999999999998 566554 578999997654331111
Q ss_pred cceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCC
Q 001160 386 PFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPN 465 (1134)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~ 465 (1134)
.| .....+.+|-+.|.++.||.|.++|++|+.|-++++|+++..+.+. ...+.+|.+.|-++-|..+.
T Consensus 134 pF-----------vl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~-~~~l~gHkd~VvacfF~~~~ 201 (893)
T KOG0291|consen 134 PF-----------VLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF-TYALNGHKDYVVACFFGANS 201 (893)
T ss_pred cc-----------eEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccc-eEeccCCCcceEEEEeccCc
Confidence 22 1222367899999999999999999999999999999999877643 34788999999999999998
Q ss_pred CcEEEEEEcCCCcEEEEECCC-----------------------Cee-----------eEEecCCCCCeEEEEeeccCCc
Q 001160 466 KQLCIVTCGDDKMIKVWDVVA-----------------------GRK-----------QYTFEGHEAPVYSVCPHHKESI 511 (1134)
Q Consensus 466 ~~~~l~sg~~d~~i~iwd~~~-----------------------~~~-----------~~~~~~h~~~v~~i~~~~~~~~ 511 (1134)
. -++|-+.||.+.+|.... ++. .+-+......|++.+|++..
T Consensus 202 ~--~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t-- 277 (893)
T KOG0291|consen 202 L--DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT-- 277 (893)
T ss_pred c--eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc--
Confidence 8 799999999999998661 111 01122234789999999876
Q ss_pred cEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcce
Q 001160 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 591 (1134)
Q Consensus 512 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 591 (1134)
..|++|-..|...+|.+.....+..+.....+|..++|+..|.+++.++. +-|++.+|+..+...+...++|.. .+
T Consensus 278 ~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEsYVlKQQgH~~-~i 353 (893)
T KOG0291|consen 278 NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSESYVLKQQGHSD-RI 353 (893)
T ss_pred eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC---ccceEEEEEeeccceeeecccccc-ce
Confidence 79999999999999999999999999988899999999999999999884 578999999999999999999988 89
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhh
Q 001160 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1134)
Q Consensus 592 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 671 (1134)
++++++|||+++++|++||.|++||..++-++.++..| ...|+.+.|+..|+.+++.+-||+||.||+... +..+++
T Consensus 354 ~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteH--ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRTf 430 (893)
T KOG0291|consen 354 TSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEH--TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRTF 430 (893)
T ss_pred eeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccC--CCceEEEEEEecCCEEEEeecCCeEEeeeeccc-ceeeee
Confidence 99999999999999999999999999999999999877 458999999999999999999999999999766 434333
Q ss_pred cCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceec
Q 001160 672 EGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWR 751 (1134)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~ 751 (1134)
..+
T Consensus 431 t~P----------------------------------------------------------------------------- 433 (893)
T KOG0291|consen 431 TSP----------------------------------------------------------------------------- 433 (893)
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 221
Q ss_pred cCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeecc-CeeEEeecccccCCCCCCcccccCcccccCCCCCccc
Q 001160 752 IPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN-AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMT 830 (1134)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-g~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 830 (1134)
......+++..|.|..+++|+.| -.|.+| ...+|+++.
T Consensus 434 -------------------~p~QfscvavD~sGelV~AG~~d~F~IfvW----------------------S~qTGqllD 472 (893)
T KOG0291|consen 434 -------------------EPIQFSCVAVDPSGELVCAGAQDSFEIFVW----------------------SVQTGQLLD 472 (893)
T ss_pred -------------------CceeeeEEEEcCCCCEEEeeccceEEEEEE----------------------EeecCeeee
Confidence 11234688899999988888877 345555 456666665
Q ss_pred cccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCe-EEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEE
Q 001160 831 NDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK-VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 908 (1134)
Q Consensus 831 ~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~-~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~i 908 (1134)
. +.| | +++|.+++|+|+|..||+++ |.+|++||+-... .+.++. +...+..++|+| +|+-||+++-||.|.+
T Consensus 473 i-LsG--H-EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrP-dG~elaVaTldgqItf 546 (893)
T KOG0291|consen 473 I-LSG--H-EGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRP-DGKELAVATLDGQITF 546 (893)
T ss_pred h-hcC--C-CCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcC-CCCeEEEEEecceEEE
Confidence 3 555 8 99999999999999999999 9999999986543 344444 778899999999 9999999999999999
Q ss_pred EEcCCceEEEEec--------------------CcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCC
Q 001160 909 YNVRVDEVKTKLK--------------------GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1134)
Q Consensus 909 wd~~~~~~~~~l~--------------------~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~ 968 (1134)
||+..+..+..+. ......+.+++|+||..+++||..+.|++|++.++-.++...+..-.
T Consensus 547 ~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~ 626 (893)
T KOG0291|consen 547 FDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNR 626 (893)
T ss_pred EEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEecccc
Confidence 9988765543322 12346889999999999999999999999999998766544433221
Q ss_pred CCCCCCcCceEEEECCCCcEEEEEE-----CCeEEE-------EeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEe
Q 001160 969 GRQSPLVGETKVQFHNDQTHLLVVH-----ESQISV-------YDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1036 (1134)
Q Consensus 969 ~~~~~~~~v~~~~fspdg~~l~~~~-----d~~v~v-------wd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~ 1036 (1134)
.-.....-...=.+.+-|.+-.+-. ++.|-+ +|+..+ ...+ .-.|+++.|||.|+-+|.++
T Consensus 627 sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssR---r~rp----eIrv~sv~fsPtgraFAaat 699 (893)
T KOG0291|consen 627 SLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSR---RFRP----EIRVTSVQFSPTGRAFAAAT 699 (893)
T ss_pred chhHHHHHhccccccccCCccccccccccccccccccCCccccCCcccc---ccCc----eEEEEEEEECCCcCeeeeec
Confidence 1110000111122333333222210 111111 111111 0000 33688999999999999998
Q ss_pred cCCcEEEEeCCCcceee
Q 001160 1037 CDGAIGVFDAETLRFRC 1053 (1134)
Q Consensus 1037 ~dg~I~vwd~~~~~~~~ 1053 (1134)
..| |.||.+++.-+..
T Consensus 700 TEG-l~IYsld~~~~FD 715 (893)
T KOG0291|consen 700 TEG-LLIYSLDTTILFD 715 (893)
T ss_pred ccc-eEEEecCCceEEc
Confidence 887 7888887754443
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.7e-49 Score=419.78 Aligned_cols=574 Identities=14% Similarity=0.229 Sum_probs=441.8
Q ss_pred cCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 001160 356 PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLY 435 (1134)
Q Consensus 356 pdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iw 435 (1134)
..|++ ++ ++....|.+||+++|+..... +...-...|+|+.-+||.-+||+|..||.|+||
T Consensus 32 ~~Gr~-va-~~a~E~vn~WdlRtge~~~~l-----------------~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif 92 (888)
T KOG0306|consen 32 GKGRA-VA-VSALEQVNIWDLRTGEIEKKL-----------------ILLKKKAEVTCLRSSDDILLLAVGYADGSVQIF 92 (888)
T ss_pred CCCcE-EE-EeccccEeEEeeecchhhhhh-----------------hhhcccceEEEeeccCCcceEEEEecCceEEee
Confidence 45774 33 333568999999999544320 011234689999999999999999999999999
Q ss_pred EcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEE
Q 001160 436 TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF 515 (1134)
Q Consensus 436 d~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~ 515 (1134)
+..++.... .+.||...|+++.|...|. .|++||.|+.|.+||+-...-+..+.||...|+..-|.... .+++
T Consensus 93 ~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~--~~lv 165 (888)
T KOG0306|consen 93 SLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGD--SFLV 165 (888)
T ss_pred ccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCC--eEEE
Confidence 999875443 8899999999999999999 89999999999999999888899999999999999887643 8999
Q ss_pred EEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC-------e-----eEEEe
Q 001160 516 STAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-------A-----IKRTY 583 (1134)
Q Consensus 516 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-------~-----~~~~~ 583 (1134)
+.+.|+.|++||+++..+..+...|.+.++++++.+ +.+++++. ++.+.+|++... . ...++
T Consensus 166 S~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 166 SVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRYISTKLRGTF 239 (888)
T ss_pred EeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeecccccccccccceeecccee
Confidence 999999999999999999999999999999999988 67777764 667999998210 0 11112
Q ss_pred cCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEE--------eC------------------------CCC
Q 001160 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV--------DA------------------------DGG 631 (1134)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~------------------------~~~ 631 (1134)
.....+..-.+...++++++++-+.|..+.++.+.+.+.+... .. -..
T Consensus 240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~ 319 (888)
T KOG0306|consen 240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT 319 (888)
T ss_pred eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence 1112223334666778889999999999999988653311000 00 000
Q ss_pred CCCcceEEEccCCC---EEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCC
Q 001160 632 LPASPRLRFNKEGS---LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708 (1134)
Q Consensus 632 ~~~v~~~~~s~d~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1134)
...+.++.|.|.+. .|+. -.++++..|.++.. ....
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s-~~~~--------------------------------------- 358 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENS-GKTS--------------------------------------- 358 (888)
T ss_pred hhheeEEEEEecCCcceeEEE-eecCceEEEEeccC-CCCC---------------------------------------
Confidence 12345566655432 2222 44556666655431 0000
Q ss_pred CCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceE
Q 001160 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLL 788 (1134)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 788 (1134)
| .......+.+ .+|...|.++++|.+...++
T Consensus 359 -p----------------------------------------------~~~~~~~i~~--~GHR~dVRsl~vS~d~~~~~ 389 (888)
T KOG0306|consen 359 -P----------------------------------------------EADRTSNIEI--GGHRSDVRSLCVSSDSILLA 389 (888)
T ss_pred -c----------------------------------------------cccccceeee--ccchhheeEEEeecCceeee
Confidence 0 0011112223 34889999999999987555
Q ss_pred EeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEE
Q 001160 789 ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFN 867 (1134)
Q Consensus 789 ~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd 867 (1134)
++ ..+.+++|+. .+.++++... .+.+.+..|-|.++++++|. .|.+.+||
T Consensus 390 Sg-a~~SikiWn~----------------------~t~kciRTi~------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 390 SG-AGESIKIWNR----------------------DTLKCIRTIT------CGYILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred ec-CCCcEEEEEc----------------------cCcceeEEec------cccEEEEEecCCCceEEEeccCCceEEEE
Confidence 54 4567888864 4444444321 45788999999999999999 89999999
Q ss_pred CCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC-----ceEEEEec-------CcccceEEEEEecC
Q 001160 868 MMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-----DEVKTKLK-------GHQNRITGLAFSPT 935 (1134)
Q Consensus 868 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~-----~~~~~~l~-------~h~~~i~~l~~s~d 935 (1134)
+.+...+.+.++|.+.|.+++.+| |++.+++|+.|.+|++||..- |...+.+. .-.+.|.|+.+|||
T Consensus 441 laS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spd 519 (888)
T KOG0306|consen 441 LASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPD 519 (888)
T ss_pred eehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCC
Confidence 999999999999999999999999 999999999999999999641 21111121 13457999999999
Q ss_pred CCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeC-CCcceeccCCC
Q 001160 936 LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPK 1013 (1134)
Q Consensus 936 ~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~ 1013 (1134)
|++||.+--|.+|+||-+++-+ +.-...||. .+|.++..|||++++++ +.|++|++|-+ =|.|.+.+
T Consensus 520 gk~LaVsLLdnTVkVyflDtlK-----FflsLYGHk---LPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~--- 588 (888)
T KOG0306|consen 520 GKLLAVSLLDNTVKVYFLDTLK-----FFLSLYGHK---LPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF--- 588 (888)
T ss_pred CcEEEEEeccCeEEEEEeccee-----eeeeecccc---cceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh---
Confidence 9999999999999999999966 677788998 68999999999999999 57999999999 67777766
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCc
Q 001160 1014 DALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGA 1093 (1134)
Q Consensus 1014 ~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~ 1093 (1134)
.+|...|.++.|.|+..++.+++.|+.|+-||..+.+.+..+..|. .-+.|++-+| +|.+++|+|.|.+
T Consensus 589 fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~----------~ev~cLav~~-~G~~vvs~shD~s 657 (888)
T KOG0306|consen 589 FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHH----------SEVWCLAVSP-NGSFVVSSSHDKS 657 (888)
T ss_pred hcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccch----------heeeeeEEcC-CCCeEEeccCCce
Confidence 4568999999999999999999999999999999999999888663 3444777778 7899999999999
Q ss_pred EEEEecCCCc
Q 001160 1094 VHVVEPSDAE 1103 (1134)
Q Consensus 1094 v~vW~~~~~~ 1103 (1134)
|++|+..+..
T Consensus 658 IRlwE~tde~ 667 (888)
T KOG0306|consen 658 IRLWERTDEI 667 (888)
T ss_pred eEeeeccCcc
Confidence 9999987643
No 10
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-50 Score=400.69 Aligned_cols=367 Identities=20% Similarity=0.306 Sum_probs=306.1
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+.||.++|.|++|+|+|+.||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .||+|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 67899999999999999999999999999999999976555 8889999999999999999 899999999999999
Q ss_pred CCCCeee-EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeC
Q 001160 484 VVAGRKQ-YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1134)
Q Consensus 484 ~~~~~~~-~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1134)
.++|+++ ..|.+|...|++++|.|-. ..|..++|++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------l~p~~r~las~s-- 224 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------LVPPCRRLASSS-- 224 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccc---------------------------------------cCCCccceeccc--
Confidence 9998876 5799999999999997742 236667788776
Q ss_pred CCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc
Q 001160 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1134)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1134)
+|+.++|||+..+.++..+.+|.. +|+|+.|..+| ++++|+.|++|++|+...|.+...+.+|.+ .|+.++.+-
T Consensus 225 --kDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lalsT 298 (480)
T KOG0271|consen 225 --KDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALST 298 (480)
T ss_pred --CCCCEEEEEccCceEEEEeccCcc-ceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--heeeeeccc
Confidence 477799999999999999999998 99999998765 899999999999999999999999998876 799999886
Q ss_pred CCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccc
Q 001160 643 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 722 (1134)
Q Consensus 643 d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1134)
|- .|-+|..|.+=+-....+. .....++....
T Consensus 299 dy-~LRtgaf~~t~~~~~~~se-~~~~Al~rY~~---------------------------------------------- 330 (480)
T KOG0271|consen 299 DY-VLRTGAFDHTGRKPKSFSE-EQKKALERYEA---------------------------------------------- 330 (480)
T ss_pred hh-hhhccccccccccCCChHH-HHHHHHHHHHH----------------------------------------------
Confidence 53 2334443332211111111 11111211100
Q ss_pred CccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecc
Q 001160 723 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQ 802 (1134)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~ 802 (1134)
..-..+..|++++.|.++.+|+-.
T Consensus 331 --------------------------------------------------------~~~~~~erlVSgsDd~tlflW~p~ 354 (480)
T KOG0271|consen 331 --------------------------------------------------------VLKDSGERLVSGSDDFTLFLWNPF 354 (480)
T ss_pred --------------------------------------------------------hhccCcceeEEecCCceEEEeccc
Confidence 001123568999999999999743
Q ss_pred cccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCC
Q 001160 803 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP 881 (1134)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~ 881 (1134)
. +.+++.. +.+ | ..-|..+.||||++++|+++ |..|++||..+|+.+.+|++|-
T Consensus 355 ~---------------------~kkpi~r-mtg--H-q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv 409 (480)
T KOG0271|consen 355 K---------------------SKKPITR-MTG--H-QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHV 409 (480)
T ss_pred c---------------------cccchhh-hhc--h-hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcc
Confidence 2 2222221 334 8 99999999999999999999 9999999999999999999999
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEe
Q 001160 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1134)
Q Consensus 882 ~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd 952 (1134)
.+|..++|+. |.++|++|+.|.++++||+.+.++...|.||.+.|.++.|+|||..+++++.|..+++|.
T Consensus 410 ~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 410 AAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999995
No 11
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-48 Score=416.33 Aligned_cols=498 Identities=14% Similarity=0.281 Sum_probs=402.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
...+|+|+.-+||.. +||+|..||.|+||+..++..+.+ +.||...|+++.|...|.+||
T Consensus 64 ~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rla 123 (888)
T KOG0306|consen 64 KKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRLA 123 (888)
T ss_pred ccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceEe
Confidence 446899999999986 789999999999999998765543 789999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1134)
+|+.|+.|.+||+-....+. .+.||...|+..-|..+.+ ++++.+.|+.|++||+++..|..+.-.|.+.|++++
T Consensus 124 SGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~ 198 (888)
T KOG0306|consen 124 SGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALV 198 (888)
T ss_pred ecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEE
Confidence 99999999999998765444 7889999999999998777 899999999999999999999999999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCCCce------e-------EecCCC------------------------------
Q 001160 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSR------V-------DYDAPG------------------------------ 541 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~------~-------~~~~~~------------------------------ 541 (1134)
+.+ ..+++++.|+.+++|++...... . ......
T Consensus 199 ~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~ 274 (888)
T KOG0306|consen 199 LDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIR 274 (888)
T ss_pred Eec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeec
Confidence 976 68999999999999998210000 0 000001
Q ss_pred ----------------------------------------------CcEEEEEECCCCCE---EEEEeeCCCCCCcEEEE
Q 001160 542 ----------------------------------------------NWCTMMAYSADGTR---LFSCGTSKEGESHLVEW 572 (1134)
Q Consensus 542 ----------------------------------------------~~v~~~~~s~~~~~---l~~~~~~~~~~~~i~~w 572 (1134)
..+.++.|.|.++. |+.- .++.+..|
T Consensus 275 s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l-----~nNtv~~y 349 (888)
T KOG0306|consen 275 SKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLL-----ANNTVEWY 349 (888)
T ss_pred CHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEe-----ecCceEEE
Confidence 12333444443321 2221 13445556
Q ss_pred eCCC-Cee--------EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccC
Q 001160 573 NESE-GAI--------KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1134)
Q Consensus 573 d~~~-~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 643 (1134)
.+.. +.. ..++.+|.. .|++++++.+...+++| ..+.+.+|+..+.+++.++... .+.+..|-|.
T Consensus 350 sl~~s~~~~p~~~~~~~i~~~GHR~-dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~----y~l~~~Fvpg 423 (888)
T KOG0306|consen 350 SLENSGKTSPEADRTSNIEIGGHRS-DVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG----YILASKFVPG 423 (888)
T ss_pred EeccCCCCCccccccceeeeccchh-heeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc----cEEEEEecCC
Confidence 5543 111 134556666 89999999887666655 4678999999999999999754 6788999999
Q ss_pred CCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccC
Q 001160 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (1134)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1134)
++++++|...|.+.+||+.+. .++.+++.
T Consensus 424 d~~Iv~G~k~Gel~vfdlaS~-~l~Eti~A-------------------------------------------------- 452 (888)
T KOG0306|consen 424 DRYIVLGTKNGELQVFDLASA-SLVETIRA-------------------------------------------------- 452 (888)
T ss_pred CceEEEeccCCceEEEEeehh-hhhhhhhc--------------------------------------------------
Confidence 999999999999999999877 44443332
Q ss_pred ccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeeccc
Q 001160 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQR 803 (1134)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~ 803 (1134)
|.+.|.+++.+||++.+++++.|.+|++|+...
T Consensus 453 -----------------------------------------------HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l 485 (888)
T KOG0306|consen 453 -----------------------------------------------HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKL 485 (888)
T ss_pred -----------------------------------------------cccceeeeeecCCCCceEEecCCcEEEEEeEEE
Confidence 677889999999999999999999999999864
Q ss_pred ccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCC
Q 001160 804 TERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPP 882 (1134)
Q Consensus 804 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~ 882 (1134)
.... .|.... +-.+...+. +.- ...|.|+.+||||++||++- |.+++||-+++.+....+.||.-
T Consensus 486 ~~~~-~gt~~k-----~lsl~~~rt----Lel----~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkL 551 (888)
T KOG0306|consen 486 VVSV-PGTQKK-----VLSLKHTRT----LEL----EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL 551 (888)
T ss_pred Eecc-Ccccce-----eeeeccceE----Eec----cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccccc
Confidence 3221 111000 000111111 222 77899999999999999998 99999999999999999999999
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccce
Q 001160 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR 962 (1134)
Q Consensus 883 ~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~ 962 (1134)
+|.|+..|| |+++++||+.|.+|+||-++-|.|.+.+-+|.+.|.++.|-|+..++.|+|.|+.|+-||-+..+
T Consensus 552 PV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe----- 625 (888)
T KOG0306|consen 552 PVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE----- 625 (888)
T ss_pred ceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh-----
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999998877
Q ss_pred eeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeCC
Q 001160 963 FIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSK 1003 (1134)
Q Consensus 963 ~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~~ 1003 (1134)
.+....+|. ..|.+++.+|+|.++++ ++|.+|++|..+
T Consensus 626 ~iq~L~~H~---~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 626 EIQKLDGHH---SEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred hheeeccch---heeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 566777887 68999999999999999 679999999973
No 12
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-49 Score=393.71 Aligned_cols=286 Identities=20% Similarity=0.352 Sum_probs=260.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
|.++|.|++|||+|+ .||+|+.|.++++||+.+.....+ .++|...|.|++|||||+.||
T Consensus 114 H~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcvawsPDgk~iA 173 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVAWSPDGKKIA 173 (480)
T ss_pred CCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEEECCCcchhh
Confidence 889999999999998 689999999999999999877654 789999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEec-----CCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCC
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-----PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-----d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1134)
+|+.||+|++||.++|+++.. .|.+|...|++++|-| ..+ +|++++.||+|+|||+..+.++..+.||..+
T Consensus 174 SG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~~~lsgHT~~ 249 (480)
T KOG0271|consen 174 SGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCVRTLSGHTAS 249 (480)
T ss_pred ccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEEEEeccCccc
Confidence 999999999999999987654 6789999999999975 455 8999999999999999999999999999999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEEC-----------CCCC--------------
Q 001160 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYS-----------ADGT-------------- 554 (1134)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s-----------~~~~-------------- 554 (1134)
|+|+.|-.. .++++++.|++|++|+...+.....+.+|.++|+.++.+ |.++
T Consensus 250 VTCvrwGG~---gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~ 326 (480)
T KOG0271|consen 250 VTCVRWGGE---GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALE 326 (480)
T ss_pred eEEEEEcCC---ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHH
Confidence 999998433 699999999999999999988889999999999999877 2233
Q ss_pred -----------EEEEEeeCCCCCCcEEEEeCCC-CeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCee
Q 001160 555 -----------RLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1134)
Q Consensus 555 -----------~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1134)
.+++++. |.++.+|+... .+++..+.+|.. .|+.+.|+||++++++++.|..|++||.++|+.
T Consensus 327 rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~ 401 (480)
T KOG0271|consen 327 RYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF 401 (480)
T ss_pred HHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchhh-heeeEEECCCccEEEEeecccceeeeeCCCcch
Confidence 4888874 78899999864 458889999988 899999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+.++.+| ...|+.++|+.|.++|++|+.|.++++|++.+.
T Consensus 402 lasfRGH--v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 402 LASFRGH--VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred hhhhhhc--cceeEEEEeccCccEEEEcCCCceEEEEEeeee
Confidence 9999977 558999999999999999999999999999876
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3.7e-44 Score=380.17 Aligned_cols=625 Identities=12% Similarity=0.183 Sum_probs=421.6
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe--C
Q 001160 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF--S 428 (1134)
Q Consensus 351 ~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~--~ 428 (1134)
.++.+|-.. ++|. -....|.+||.+....- +++..|..+++|+|||++|+|+|+|- .
T Consensus 42 gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~-------------------hlvnssRk~~t~vAfS~~GryvatGEcG~ 100 (1080)
T KOG1408|consen 42 GLASVPCSG-LCAY-PAGCVVVLFNVDSCTQS-------------------HLVNSSRKPLTCVAFSQNGRYVATGECGR 100 (1080)
T ss_pred ccccccccc-ceee-ccCcEEEEEcccccchh-------------------heecccCcceeEEEEcCCCcEEEecccCC
Confidence 455556554 3332 12347889998865433 23566888999999999999999984 6
Q ss_pred CCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcC--CCcEEEEECCCCeeeEEecCCCCCeEEEEee
Q 001160 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1134)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~--d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 506 (1134)
...++||++.....+. +|..|...|+|++|+|.++ ++++.+. |-.|.+||++.......- .-...|..++|+
T Consensus 101 ~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav~fs 174 (1080)
T KOG1408|consen 101 TPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAVAFS 174 (1080)
T ss_pred Cccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhccccccc-ccceeEEEEEEc
Confidence 7889999999887665 7889999999999999999 7776654 556778987654433222 235668888885
Q ss_pred ccCCccEEEEEecCCeEEEEEccCCCcee---EecCCCCcEEEEEECCCCCEEE-EEeeCCC--------CCCcEEEEeC
Q 001160 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLF-SCGTSKE--------GESHLVEWNE 574 (1134)
Q Consensus 507 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~-~~~~~~~--------~~~~i~~wd~ 574 (1134)
. +|.|+++.+ ...|++|.++...... .+.+...-...+.+ ..+++ .|+...- ..|.+.-+.
T Consensus 175 E--dgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~---n~f~avaCg~gicAestfait~qGhLvEFS- 247 (1080)
T KOG1408|consen 175 E--DGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRF---NEFLAVACGVGICAESTFAITAQGHLVEFS- 247 (1080)
T ss_pred c--CCceeeeee-eeeEEEEEeeccccccCCccccchhhhcccccc---chhhhhhhcCcccccceEEEecccceeeec-
Confidence 4 568888876 6789999998765322 11111111111111 11111 1110000 022222222
Q ss_pred CCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC----------------------CCC
Q 001160 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD----------------------GGL 632 (1134)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------------~~~ 632 (1134)
+.+++..+..-.....+|++.+ .+++++|+.+|.|++|+..+-.-..+++.. ...
T Consensus 248 -sRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~f 324 (1080)
T KOG1408|consen 248 -SRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIF 324 (1080)
T ss_pred -hhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccC
Confidence 2222222221122245667666 568999999999999998775544443211 111
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhh--hhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCC
Q 001160 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL--RMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTL 710 (1134)
Q Consensus 633 ~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1134)
+...++.|++....|.+...|..++|||+++-.+.- ..+-.|...++.+...+
T Consensus 325 PD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p------------------------- 379 (1080)
T KOG1408|consen 325 PDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLP------------------------- 379 (1080)
T ss_pred CceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeecccc-------------------------
Confidence 234578899989999999999999999998753321 22233433332211111
Q ss_pred CCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEe
Q 001160 711 ERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLAL 790 (1134)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 790 (1134)
..+........|.+.++++++|++|++|+++........+.-.+ ......+.+.
T Consensus 380 ------------~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil-----s~~l~ki~y~--------- 433 (1080)
T KOG1408|consen 380 ------------CNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL-----SANLSKIPYE--------- 433 (1080)
T ss_pred ------------ccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc-----hhhhhcCccc---------
Confidence 01112223445667788999999999999986333322221110 0011111111
Q ss_pred eccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECC
Q 001160 791 ASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMM 869 (1134)
Q Consensus 791 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~ 869 (1134)
|+...+.. ....-++|...... .. . ...++++++||||++||+|+ .|.++||++.
T Consensus 434 --d~~~q~~~--------------d~~~~~fdka~~s~----~d---~-r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq 489 (1080)
T KOG1408|consen 434 --DSTQQIMH--------------DASAGIFDKALVST----CD---S-RFGFRALAVSPDGQHLASGDRGGNLRVYDLQ 489 (1080)
T ss_pred --cCchhhhh--------------hccCCcccccchhh----cC---c-ccceEEEEECCCcceecccCccCceEEEEeh
Confidence 11111100 00001111111111 11 2 67899999999999999999 7999999999
Q ss_pred CCeEEEEecCCCCceEEEEEcCC--CCcEEEEEeCCCcEEEEEcCC-ceEEEEecCcccceEEEEEecCC--CEEEEEcC
Q 001160 870 TFKVMTMFMSPPPAATFLAFHPQ--DNNIIAIGMEDSSVQIYNVRV-DEVKTKLKGHQNRITGLAFSPTL--NALVSSGA 944 (1134)
Q Consensus 870 ~~~~~~~~~~~~~~i~~l~~s~~--~~~~lasg~~dg~i~iwd~~~-~~~~~~l~~h~~~i~~l~~s~d~--~~l~s~~~ 944 (1134)
..+.+..+..|..+|.|+.||-. ..++||+++.|..|.|||+.. ..++.++.+|+..|+++.|.-.| ..++++|.
T Consensus 490 ~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGA 569 (1080)
T KOG1408|consen 490 ELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGA 569 (1080)
T ss_pred hhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccC
Confidence 99999999999999999999852 357999999999999999874 46778899999999999998877 78999999
Q ss_pred CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeC-CCcceeccCCCCCCCCCeEE
Q 001160 945 DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISS 1022 (1134)
Q Consensus 945 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~ 1022 (1134)
|..|.+--.+.... . .+..-..+......+..++..|..+++++ +.|+.|+||++ .+++.+.+...++|.+....
T Consensus 570 DksimFr~~qk~~~--g-~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIK 646 (1080)
T KOG1408|consen 570 DKSIMFRVNQKASS--G-RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIK 646 (1080)
T ss_pred chhhheehhccccC--c-eeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEE
Confidence 99775433321110 0 11111111122245788999999999999 78999999999 89999999999999999999
Q ss_pred EEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCC
Q 001160 1023 AIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1023 v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~ 1101 (1134)
+...|.|-|||+.+.|+++.++|..+|+++.++.+| ...++.+.|.+ |.+.|++.+.||+|+||.+.-
T Consensus 647 v~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH----------sE~VTG~kF~n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 647 VILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH----------SEAVTGVKFLN-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEECCCccEEEEeecCCceEEEEeccchhhhhhcCc----------chheeeeeecc-cchhheeecCCceEEEEECch
Confidence 999999999999999999999999999999988754 46778999999 789999999999999999863
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.3e-42 Score=372.02 Aligned_cols=562 Identities=15% Similarity=0.216 Sum_probs=366.7
Q ss_pred cchHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc--------HHHHH--------------------------HH--hh
Q 001160 3 SLSRELVFLILQFLDEEKFKETVHKLEQESGFFFN--------MKHFE--------------------------DQ--VQ 46 (1134)
Q Consensus 3 ~~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~--------~~~~~--------------------------~~--i~ 46 (1134)
+..+++++++++||+..||+++.+.|.+|.++... ..-+| .+ +.
T Consensus 19 ~~~~~~n~~v~~yl~~~~y~~te~~l~~e~~l~s~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 98 (707)
T KOG0263|consen 19 SHTRDLNRIVLEYLRKKKYSRTEEMLRQEANLPSRPVNGMPAEPDYDREQFEALPPIGLPKENADDETPQGLSSSAVPVE 98 (707)
T ss_pred cchHHHHHHHHHHHhhhcccccchhhhhhhcccccccCCCccccchhhhhhhccCCccccccccCCcccccccccCchhh
Confidence 35679999999999999999999999999875432 11111 00 11
Q ss_pred cccHHHH------HHHhcCccccc-------ccchhhHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHH
Q 001160 47 AGEWDEV------ERYLCGFTKVE-------DNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFK 113 (1134)
Q Consensus 47 ~g~w~~~------~~~l~~l~~~~-------~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~ 113 (1134)
.-.|... ++....|+.+. ..++. .++|+|+.|.||+|+.++....|..|+.+.--.++.++.+.+.
T Consensus 99 ~~~~~~~~~~~~ye~~y~~lk~~ve~Sldi~k~El~-~iLypifv~~yldl~~~~~~~~a~~Ffe~f~~d~~~~~~e~i~ 177 (707)
T KOG0263|consen 99 KALWSAEEIPDQYEHVYSELKTWVEDSLDIYKAELS-PILYPIFVHSYLDLVQKSAYETAKSFFERFRGDHKVYHSESIF 177 (707)
T ss_pred hccccccCCChhHhhhhhhcchhhhCcchhhhHHHH-HHHHHHHHHHHHHHHHcCcHHHHHHHHHHhccchhhhhhHHHH
Confidence 1112222 22222233221 12334 4999999999999999999999999999887777777888889
Q ss_pred HHHHhhcccCccchhhhccCCC----chhHHHHHHHHHHhhcccCccccccCCCCCCchhHHHHHHHHHHHHHHhhCCCC
Q 001160 114 EITQLLTLDNFRQNEQLSKYGD----TKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQHQLCKNP 189 (1134)
Q Consensus 114 ~l~~l~~~~~~~~~~~~~~~~~----~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~Q~~~~~~~ 189 (1134)
+|..+-...++.+++....+.. ..-+|. .+..|.+++-+... +-..-+..+|+|++..++......
T Consensus 178 ~l~~~~~~~~i~~ne~~~~~~~~ky~i~~sr~-s~~lL~~~l~~~~~---------~~g~~i~~ii~~hldi~v~~~~~~ 247 (707)
T KOG0263|consen 178 QLLSLETIKHIKENETARAFRKNKYVIRLSRD-SFDLLLRFLQEDNN---------IGGTIIIKIINQHLDIDVFDGVMA 247 (707)
T ss_pred HHHhhhhHHHHhhhhhHHHHhhCcEEEEecHH-HHHHHHHHhhhhcc---------ccchHHHHHHHHHhCccccccccc
Confidence 9998888888877776665544 223332 22233333333222 234568889999988887654332
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCC----CCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 001160 190 RPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFP----PIGAHGPFQPVVSPSPGAIAGWMSSNSPSLPHP 265 (1134)
Q Consensus 190 ~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~h~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (1134)
+.......+ ..|---...+..+.+.+--.-..+.+++...++ .+..-.| - +.++- ++.-..+
T Consensus 248 r~~~~~~~~-~g~~~~~i~g~~~~e~~~~~~~l~~~~~e~~~~~~~~~~~e~~D----~-----~~~~~----~~~~~~~ 313 (707)
T KOG0263|consen 248 RRTTKPTAM-VGSEQESIAGEAKREINKQKVQLGLLLKEEEIEKKLPILLEVED----D-----PNEPD----NEKLKKP 313 (707)
T ss_pred cccccchhh-cccccccccccchhhcccceeeecccccchhhhhcccccccCcc----c-----ccccc----ccccccc
Confidence 210000000 000000000001111110000011112111100 0000000 0 00000 0000000
Q ss_pred CccCCCCCCCCCCcc-cccccCCCCCCCCCcccccCCChhhhhhhcccCCcceeEeeCCCCCCccccCccccceEEEEec
Q 001160 266 SMAAGPPGFVQPSSA-VGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLN 344 (1134)
Q Consensus 266 ~~~~~~i~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~~~~~~~~~~~l~ 344 (1134)
++ ....+..+...+ ....+....|+.. ... ........ .+.+.-.....+.++..++.++.
T Consensus 314 ~~-~~~~~~~k~~d~~~ps~d~iPlPp~~-~~d-------~~~~~~~l---------~d~~kr~~l~~~~lpSic~YT~~ 375 (707)
T KOG0263|consen 314 KK-KKLLSEEKKRDPNAPSRDRIPLPPLK-QVD-------KLAELEAL---------KDEQKRVKLGRNSLPSICMYTFH 375 (707)
T ss_pred hh-hhhhhhhhccccCCCccccCCCCccc-chh-------HHHHHHHH---------HHHHHHhhcCCCCCCcEEEEEEE
Confidence 00 000000000000 0001111122210 000 00000000 00111112224667888888888
Q ss_pred -CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccc--c-cccee---------eccccccccccccccccCCcCe
Q 001160 345 -QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA--H-KPFKV---------WDISAASMPLQNALLNDAAISV 411 (1134)
Q Consensus 345 -h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~--~-~~~~~---------~~~~~~~~~~~~~~l~~h~~~V 411 (1134)
....++|+.||+|+. ++|.|-.|..|++|.+...+... . ..+.. -++...........+.||.++|
T Consensus 376 nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV 454 (707)
T KOG0263|consen 376 NTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV 454 (707)
T ss_pred EcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence 567899999999998 89999999999999998643111 0 00000 0111111122233478999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeE
Q 001160 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1134)
Q Consensus 412 ~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~ 491 (1134)
..+.|+|+.++|++++.|+++++|.+.+..++- .+.||..+|+++.|+|-|- ++||+|.|++.++|......+++
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~tArLWs~d~~~PlR 529 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQTARLWSTDHNKPLR 529 (707)
T ss_pred eeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCceeeeeecccCCchh
Confidence 999999999999999999999999999987655 6779999999999999998 99999999999999999999999
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEE
Q 001160 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1134)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1134)
.+.+|.+.|.|+.|+|+. .|+++||.|.++|+||+.++..+..+.+|.++|.+++|||+|++|++++. ++.|.+
T Consensus 530 ifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e----d~~I~i 603 (707)
T KOG0263|consen 530 IFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDE----DGLIKI 603 (707)
T ss_pred hhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeeccc----CCcEEE
Confidence 999999999999999977 89999999999999999999999999999999999999999999999974 889999
Q ss_pred EeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 001160 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1134)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 620 (1134)
||+.+++++..+.+|.+ .|.++.|+.+|..|++||.|.+|++||+..-
T Consensus 604 WDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 604 WDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999999999965 9999999999999999999999999998653
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.9e-41 Score=344.93 Aligned_cols=305 Identities=16% Similarity=0.272 Sum_probs=260.2
Q ss_pred cceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCc--cccccccceeecccccccccccc-ccccCCcCeE
Q 001160 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR--ERLAHKPFKVWDISAASMPLQNA-LLNDAAISVN 412 (1134)
Q Consensus 336 ~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~l~~h~~~V~ 412 (1134)
+....+.+.|+.+|.+++|+|-...++++|+.|-+.++|++... .......++ ...... .-......|+
T Consensus 168 ~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr--------h~~~~~~~s~~~nkdVT 239 (524)
T KOG0273|consen 168 PSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR--------HCIREGGKSVPSNKDVT 239 (524)
T ss_pred cccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh--------hhhhhhcccCCccCCcc
Confidence 34456667799999999999988768999999999999998741 111100000 000000 0011235799
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE
Q 001160 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1134)
Q Consensus 413 ~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~ 492 (1134)
+++|+.+|..||+|+.||.+++|+..+. .+. ++..|.++|.++.|+.+|. +|++++.|+++.+||..+|.....
T Consensus 240 ~L~Wn~~G~~LatG~~~G~~riw~~~G~-l~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 240 SLDWNNDGTLLATGSEDGEARIWNKDGN-LIS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred eEEecCCCCeEEEeecCcEEEEEecCch-hhh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEEe
Confidence 9999999999999999999999998864 233 6778999999999999999 899999999999999999999999
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEE
Q 001160 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1134)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1134)
+.-|..+-..+.|-.. ..+++++.|+.|+++.+....+..++.+|.+.|.++.|+|.|.+|++++. |++++||
T Consensus 314 f~~~s~~~lDVdW~~~---~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~TlkiW 386 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQSN---DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKIW 386 (524)
T ss_pred eeeccCCccceEEecC---ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEee
Confidence 9889988777887543 68999999999999999999999999999999999999999999999985 8899999
Q ss_pred eCCCCeeEEEecCccCcceEEEEEeCCC---------CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccC
Q 001160 573 NESEGAIKRTYSGFRKRSLGVVQFDTTR---------NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1134)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 643 (1134)
+.........+.+|.+ .|..+.|+|+| ..+++++.|++|++||+..+.++.++..| ..+|++++|+|+
T Consensus 387 s~~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvafS~~ 463 (524)
T KOG0273|consen 387 SMGQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAFSPN 463 (524)
T ss_pred ecCCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEecCC
Confidence 9999999999999998 89999999976 36889999999999999999999999766 458999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCc
Q 001160 644 GSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
|+++|+|+.||.|.+|+..++
T Consensus 464 g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 464 GRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred CcEEEecCCCCeeEeccccch
Confidence 999999999999999999888
No 16
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.6e-37 Score=337.56 Aligned_cols=583 Identities=14% Similarity=0.145 Sum_probs=431.2
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCe
Q 001160 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431 (1134)
Q Consensus 352 v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~ 431 (1134)
..|..-|..++++.+.+.+..+||.+.-..+.- -+.+...|.|++=..+--+.|.| ..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~~vy~A~g---~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKDYVYVASG---NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCceEEEecC---cE
Confidence 556666667888888999999999987665542 23577889998876554444433 34
Q ss_pred EEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eee----EEecCCCCCeEEEEee
Q 001160 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQ----YTFEGHEAPVYSVCPH 506 (1134)
Q Consensus 432 i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~-~~~----~~~~~h~~~v~~i~~~ 506 (1134)
|.+|.. ++.++. .+..|...|.-+.- -|. .++++..++.+.||+...+ ..+ ..++...+.|+++. |
T Consensus 97 i~~~~r--gk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYAR--GKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEEc--cceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 666653 333332 45567777766543 466 7889999999999998874 221 11222233377764 5
Q ss_pred ccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCc
Q 001160 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1134)
Q Consensus 507 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1134)
|+.--+.++.|+.+|.+.+|++++++.+..+......|+++.-+|-=..++.|.. +|+|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 5544467899999999999999999999999999999999999999889998874 888999999999999999976
Q ss_pred cCcceEEEEEeCCCCEEE-EEeCCCeEEEEECCCCeeEEEEe-CCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 587 RKRSLGVVQFDTTRNRFL-AAGDEFQIKFWDMDNMNMLTTVD-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 587 ~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.+ .|++++|..||+.+. +|+..|.+.+||++..+.+..+. .| ...+....|-|....+++++.|+.+++|=..++
T Consensus 244 ~g-~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 244 WG-RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred cc-ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 44 899999999997655 56677999999999988887775 34 347888999999999999999999999976544
Q ss_pred hhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCccccccccccccccc
Q 001160 665 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV 744 (1134)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1134)
.-..+.++
T Consensus 321 dg~pR~LR------------------------------------------------------------------------ 328 (910)
T KOG1539|consen 321 DGVPRLLR------------------------------------------------------------------------ 328 (910)
T ss_pred CCcchhee------------------------------------------------------------------------
Confidence 11111110
Q ss_pred CccceeccCCCCCccceeEeecCCcccccceEEEEEe-cCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccC
Q 001160 745 DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYT-NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP 823 (1134)
Q Consensus 745 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~ 823 (1134)
...+|..+..++.|- .+|..+.+++.|++.+.+++-...++.+-.. ....
T Consensus 329 ----------------------~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~ 379 (910)
T KOG1539|consen 329 ----------------------SRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNK 379 (910)
T ss_pred ----------------------eccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccc
Confidence 012466777788877 7888899999999988887754333221111 0011
Q ss_pred CCCCccccccCCCCCCCCceEEEEeccCC----CEEEEEe--CCeEEEEECCCCeE-EEEec-----CCCCceEEEEEcC
Q 001160 824 PSGTLMTNDINESKPTEESAACIALSKND----SYVMSAS--GGKVSLFNMMTFKV-MTMFM-----SPPPAATFLAFHP 891 (1134)
Q Consensus 824 ~~~~~~~~~~~~~~h~~~~i~~~~~s~dg----~~la~~s--dg~i~vwd~~~~~~-~~~~~-----~~~~~i~~l~~s~ 891 (1134)
...+.........-- -.+|..+++...- .-++++. +..++.|++..... ...+. .-...+++++.++
T Consensus 380 ~~~kk~~~~~~~~~k-~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~ 458 (910)
T KOG1539|consen 380 KRAKKVNVFSTEKLK-LPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF 458 (910)
T ss_pred cccccccccchhhhc-CCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence 111100000000000 3456666665421 1233333 67899999987655 33333 1236799999999
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCceEEEEe---cCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCC
Q 001160 892 QDNNIIAIGMEDSSVQIYNVRVDEVKTKL---KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1134)
Q Consensus 892 ~~~~~lasg~~dg~i~iwd~~~~~~~~~l---~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~ 968 (1134)
.|++.+.|+..|.|.+|++.+|-....+ ..|.++|++++...-++.++|++.+|-+++||..+...+....+.
T Consensus 459 -CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~--- 534 (910)
T KOG1539|consen 459 -CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG--- 534 (910)
T ss_pred -cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC---
Confidence 9999999999999999999999888888 589999999999888889999999999999999986633322111
Q ss_pred CCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001160 969 GRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1046 (1134)
Q Consensus 969 ~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~ 1046 (1134)
..+.++..+.....+|+ ..|-.|+++|. +.+..+.+ .+|.+.|++++|||||++|++++.|++|++||+
T Consensus 535 ------~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f---~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 535 ------SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF---WGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred ------CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh---hccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 35678888888888888 57789999999 44444444 567999999999999999999999999999999
Q ss_pred CCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCC-CcEEEEec
Q 001160 1047 ETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSD-GAVHVVEP 1099 (1134)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~D-g~v~vW~~ 1099 (1134)
.++.++..+... .-++++.|+| .|++||+...| .-|++|.-
T Consensus 606 pt~~lID~~~vd-----------~~~~sls~SP-ngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 606 PTGTLIDGLLVD-----------SPCTSLSFSP-NGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred cCcceeeeEecC-----------CcceeeEECC-CCCEEEEEEecCceEEEEEc
Confidence 999999877533 5677899999 78999999999 57999963
No 17
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=5.6e-39 Score=340.93 Aligned_cols=569 Identities=13% Similarity=0.140 Sum_probs=373.3
Q ss_pred CCCCeeEEEEecCCCeEEEEEe--CCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
+..+++|++||++|+ ++|+|- ..-.++||++.....+.. +..|+..|+|++|+|.++|
T Consensus 77 sRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFsp~~ky 136 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFSPGNKY 136 (1080)
T ss_pred cCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeecCCCcE
Confidence 667999999999998 788875 455899999998765553 6689999999999999999
Q ss_pred EEEEeC--CCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE---ecCCC
Q 001160 423 LGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT---FEGHE 497 (1134)
Q Consensus 423 las~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~---~~~h~ 497 (1134)
+++.+. |-.|.+||++..-... -+.-...|..++|+.||. |++|.+ ...|++|.++.++.... +.+..
T Consensus 137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs 209 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRS 209 (1080)
T ss_pred EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccchh
Confidence 998765 5578889887543222 122456799999999999 888887 67899999987763221 12211
Q ss_pred CCeEEEEeeccCCccEEEEE-------------ecCCeEEEEEccCCCceeEe-cCCCCcEEEEEECCCCCEEEEEeeCC
Q 001160 498 APVYSVCPHHKESIQFIFST-------------AIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~-------------~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
.-...+.+. .+++.+ +..|.+.-+. ..+.+-.+ ......-.|++.+ .++++++..
T Consensus 210 ~~lg~lr~n-----~f~avaCg~gicAestfait~qGhLvEFS--sRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa-- 278 (1080)
T KOG1408|consen 210 YFLGNLRFN-----EFLAVACGVGICAESTFAITAQGHLVEFS--SRRLLDKWVQCRTTNANCICVS--SRLIACGCA-- 278 (1080)
T ss_pred hhccccccc-----hhhhhhhcCcccccceEEEecccceeeec--hhhhhhhhhhhhccccceeeee--cceEEEeec--
Confidence 111111110 111111 1122222221 11110000 0011223455554 467887775
Q ss_pred CCCCcEEEEeCCCCeeEEEecCccC-----------------------cceEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 001160 564 EGESHLVEWNESEGAIKRTYSGFRK-----------------------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~-----------------------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 620 (1134)
++.|++++..+-..+.++.-.+. ...-++.|++....+.+...|..+++||++.-
T Consensus 279 --~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~ 356 (1080)
T KOG1408|consen 279 --KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDV 356 (1080)
T ss_pred --cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccc
Confidence 88999999877554444321110 02335779999999999999999999999875
Q ss_pred eeEEEEe-CCCCCCCcceEEEc------------cCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCC
Q 001160 621 NMLTTVD-ADGGLPASPRLRFN------------KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 687 (1134)
Q Consensus 621 ~~~~~~~-~~~~~~~v~~~~~s------------~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1134)
+.+.... .-.|...|+.+.-- |.+ .+++++.|++||+|++..+. --..+.......
T Consensus 357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD~TIRlW~l~~ct-nn~vyrRNils~--------- 425 (1080)
T KOG1408|consen 357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG-CFTTCSSDGTIRLWDLAFCT-NNQVYRRNILSA--------- 425 (1080)
T ss_pred ccccceeeeeeccceeeeeccccccccCcccccCCcc-ceeEecCCCcEEEeeccccc-ccceeecccchh---------
Confidence 4332211 00111233333322 222 48899999999999997641 101111000000
Q ss_pred CCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecC
Q 001160 688 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLP 767 (1134)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~ 767 (1134)
..++.. ..|+..-+ -.|...-++|-.... .
T Consensus 426 ---~l~ki~------------------------------------y~d~~~q~-~~d~~~~~fdka~~s---------~- 455 (1080)
T KOG1408|consen 426 ---NLSKIP------------------------------------YEDSTQQI-MHDASAGIFDKALVS---------T- 455 (1080)
T ss_pred ---hhhcCc------------------------------------cccCchhh-hhhccCCcccccchh---------h-
Confidence 000000 00000000 000011111111000 0
Q ss_pred CcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEE
Q 001160 768 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 847 (1134)
Q Consensus 768 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~ 847 (1134)
-.....+.++++||+|++|++|..-|.++||++..... ...+ ..| +.+|.|+.
T Consensus 456 -~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-----------------------~~~~--eAH-esEilcLe 508 (1080)
T KOG1408|consen 456 -CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-----------------------TCFM--EAH-ESEILCLE 508 (1080)
T ss_pred -cCcccceEEEEECCCcceecccCccCceEEEEehhhhh-----------------------hhhe--ecc-cceeEEEe
Confidence 11345689999999999999999999999999753211 0112 238 99999999
Q ss_pred ecc---CCCEEEEEe-CCeEEEEECCCC-eEEEEecCCCCceEEEEEcCCCC-cEEEEEeCCCcEEEEEcCCceEEEEec
Q 001160 848 LSK---NDSYVMSAS-GGKVSLFNMMTF-KVMTMFMSPPPAATFLAFHPQDN-NIIAIGMEDSSVQIYNVRVDEVKTKLK 921 (1134)
Q Consensus 848 ~s~---dg~~la~~s-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~-~~lasg~~dg~i~iwd~~~~~~~~~l~ 921 (1134)
||. ..++||+++ |.-|.|||+... .++.++.+|...|+++.|.-.++ ..+++++.|+.|.+--.....-...+.
T Consensus 509 yS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~ 588 (1080)
T KOG1408|consen 509 YSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFP 588 (1080)
T ss_pred ecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecc
Confidence 986 457999999 889999999754 56788999999999999987332 567788899887664333111111222
Q ss_pred Cc-----ccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECC
Q 001160 922 GH-----QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHES 995 (1134)
Q Consensus 922 ~h-----~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~ 995 (1134)
.| ...++.|+..|..+++++++.|..|+|+|+++++..+. .+...+|. +....+...|.|.|+|+ ++|+
T Consensus 589 r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~--FKgs~~~e---G~lIKv~lDPSgiY~atScsdk 663 (1080)
T KOG1408|consen 589 RHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS--FKGSRDHE---GDLIKVILDPSGIYLATSCSDK 663 (1080)
T ss_pred ccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee--ecccccCC---CceEEEEECCCccEEEEeecCC
Confidence 12 24588999999999999999999999999999996543 23333333 56778999999999999 7999
Q ss_pred eEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCc
Q 001160 996 QISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1049 (1134)
Q Consensus 996 ~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~ 1049 (1134)
++.++|. .++|+... .||...|+.+.|++|.+.|++++.||+|.||.+...
T Consensus 664 tl~~~Df~sgEcvA~m---~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 664 TLCFVDFVSGECVAQM---TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred ceEEEEeccchhhhhh---cCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 9999999 88888775 567999999999999999999999999999999853
No 18
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.4e-41 Score=339.82 Aligned_cols=282 Identities=18% Similarity=0.276 Sum_probs=265.0
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCC--CCE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD--GLM 422 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd--g~~ 422 (1134)
.+.+|..+.||+|++ ++|||+-+|.++||+..+...+.. +.+|.+.|.++.|+|. +..
T Consensus 174 d~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~~~ 233 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSDLN 233 (459)
T ss_pred CCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCccc
Confidence 456999999999998 799999999999999998876654 7899999999999996 679
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEE
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1134)
+|+|+.||++++|++++...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||+.++..+....||...|.+
T Consensus 234 lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~ 308 (459)
T KOG0272|consen 234 LATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFS 308 (459)
T ss_pred eeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhcccccccce
Confidence 9999999999999999877666 7889999999999999999 9999999999999999999999889999999999
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE
Q 001160 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1134)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1134)
++|++++ .++++|+.|..-+|||++++.++..+.+|..+|.+++|+|+|-.+++|+. |++++|||++..+.+.+
T Consensus 309 iaf~~DG--SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~ly~ 382 (459)
T KOG0272|consen 309 IAFQPDG--SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSELYT 382 (459)
T ss_pred eEecCCC--ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeeccccccee
Confidence 9998755 89999999999999999999999999999999999999999999999985 88999999999999999
Q ss_pred ecCccCcceEEEEEeC-CCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEE
Q 001160 583 YSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1134)
Q Consensus 583 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~ 660 (1134)
+.+|.+ .|+.+.|+| .|.+|++++.|+++++|...+..+++.+.+|.+ .|.++.+++|+..+++++.|.++++|.
T Consensus 383 ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 383 IPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeeecc
Confidence 999998 899999998 678899999999999999999999999998855 799999999999999999999999995
No 19
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.4e-40 Score=334.23 Aligned_cols=285 Identities=20% Similarity=0.319 Sum_probs=262.8
Q ss_pred cCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001160 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1134)
Q Consensus 406 ~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~ 485 (1134)
+...+|..+.||+|++.||+|+.+|.+++|+..+...+. +|.+|...|.++.|+|......+|||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 567889999999999999999999999999999875554 89999999999999998422379999999999999999
Q ss_pred CCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCC
Q 001160 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1134)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1134)
+..++..+.+|...|..++|+|++ ++|+|++.|.+-++||+.+........+|...|.+++|.+||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG--~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSG--KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCC--ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 999999999999999999999976 99999999999999999999999999999999999999999999999986
Q ss_pred CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc-CC
Q 001160 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EG 644 (1134)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~ 644 (1134)
|..-+|||+++|+++..+.+|.+ .|.+++|+|+|..+++||.|++++|||++....+.++..|. +-|+.+.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~--nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHS--NLVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceeccccc--chhhheEecccCC
Confidence 77789999999999999999988 99999999999999999999999999999999998888774 4799999999 78
Q ss_pred CEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCc
Q 001160 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 724 (1134)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1134)
.+|++++.|++++||...+. .+++.+.|
T Consensus 401 ~fL~TasyD~t~kiWs~~~~-~~~ksLaG--------------------------------------------------- 428 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW-SPLKSLAG--------------------------------------------------- 428 (459)
T ss_pred eEEEEcccCcceeeecCCCc-ccchhhcC---------------------------------------------------
Confidence 99999999999999998877 55555544
Q ss_pred cCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEee
Q 001160 725 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWK 800 (1134)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~ 800 (1134)
|.+.|.++.+++|++.+++++.|.++++|.
T Consensus 429 ----------------------------------------------He~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 429 ----------------------------------------------HEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ----------------------------------------------CccceEEEEeccCCceEEEeccCceeeecc
Confidence 667889999999999999999999999994
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-38 Score=305.35 Aligned_cols=291 Identities=17% Similarity=0.286 Sum_probs=264.3
Q ss_pred EEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC
Q 001160 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1134)
Q Consensus 340 ~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp 418 (1134)
.++|+ |.+.|.++.|++|.+ .++++++||.+.|||.-+..+.+. ++-....|..+||+|
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~sP 107 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYSP 107 (343)
T ss_pred EEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEECC
Confidence 46777 999999999999998 578999999999999988776653 344678999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCC---CccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecC
Q 001160 419 DGLMLGVAFSKHIVHLYTYNPT---GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1134)
Q Consensus 419 dg~~las~~~dg~i~iwd~~~~---~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 495 (1134)
.|+++|+|+-|+...||++.+. ...+...++.+|.+.+.|+.|.+|+. |+|++.|.+..+||+++|+.+..|.|
T Consensus 108 Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~G 184 (343)
T KOG0286|consen 108 SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHG 184 (343)
T ss_pred CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecC
Confidence 9999999999999999999865 22344557889999999999999775 99999999999999999999999999
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC
Q 001160 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1134)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1134)
|.+.|.++.+.|+ +++.+++|+.|+..++||++.+.+...+.+|...|++++|.|+|.-+++++. |++.++||++
T Consensus 185 H~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDlR 259 (343)
T KOG0286|consen 185 HTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDLR 259 (343)
T ss_pred CcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEeec
Confidence 9999999999986 5699999999999999999999999999999999999999999999999984 8889999999
Q ss_pred CCeeEEEecCccC-cceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCC
Q 001160 576 EGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1134)
Q Consensus 576 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg 654 (1134)
..+.+..|..... ..|++++|+..|++|++|..|..+.+||.-.++.+..+.+|.. .|.++..+|||..+++|+.|.
T Consensus 260 aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 260 ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred CCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchhH
Confidence 9999888875432 3699999999999999999999999999999999999997754 899999999999999999999
Q ss_pred cEEEEE
Q 001160 655 GIKILA 660 (1134)
Q Consensus 655 ~i~iw~ 660 (1134)
+++||.
T Consensus 338 ~lriW~ 343 (343)
T KOG0286|consen 338 TLRIWA 343 (343)
T ss_pred heeecC
Confidence 999994
No 21
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=4.4e-37 Score=327.48 Aligned_cols=593 Identities=15% Similarity=0.212 Sum_probs=399.2
Q ss_pred ccccCccccceEEEEec-CCCCeeEEEEecCCC--eEEEEEeCCCcEEEEEccCccccccccceeecccccccccccccc
Q 001160 328 NVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQ--TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (1134)
Q Consensus 328 ~~~~~~~~~~~~~~~l~-h~~~V~~v~~spdg~--~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 404 (1134)
++..+|........++. |..+|+|+.|-|+.+ -.+++|+.||.|.+|.++........ .+
T Consensus 35 ~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~-----------------~~ 97 (764)
T KOG1063|consen 35 AIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIY-----------------TI 97 (764)
T ss_pred eEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEE-----------------ee
Confidence 33444444445566666 999999999999876 24789999999999999843322211 13
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc-ceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
.+|. +.+++++.......+...|+.+.+||.+..+.. .....+.--..--.|+++.++.+.++++.|+.+..|.++.
T Consensus 98 ~g~~--~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s 175 (764)
T KOG1063|consen 98 QGHC--KECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYS 175 (764)
T ss_pred cCcc--eeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEec
Confidence 4444 455555544444444578999999999654411 0011111112223567777866666788888898999887
Q ss_pred CCCC--eeeEEecCCCCCeEEEEeeccCC-ccEEEEEecCCeEEEEEccCCC------------------------c-e-
Q 001160 484 VVAG--RKQYTFEGHEAPVYSVCPHHKES-IQFIFSTAIDGKIKAWLYDYLG------------------------S-R- 534 (1134)
Q Consensus 484 ~~~~--~~~~~~~~h~~~v~~i~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~------------------------~-~- 534 (1134)
-.++ +.+..+.||.+.|.+++|..... .-+|+++|.|..||+|.+.... . .
T Consensus 176 ~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~ 255 (764)
T KOG1063|consen 176 SSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQY 255 (764)
T ss_pred cCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEE
Confidence 5543 45678999999999999975543 4688999999999999875332 0 0
Q ss_pred -----eEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC--eeEEEec----CccCcceEEEEEeCCCCEE
Q 001160 535 -----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYS----GFRKRSLGVVQFDTTRNRF 603 (1134)
Q Consensus 535 -----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~----~~~~~~v~~~~~~~~~~~l 603 (1134)
..+.+|..+|+++.|+|.+..|++++. |.++.+|...+. -.+.... ++.........|+|+++.+
T Consensus 256 ~is~eall~GHeDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~i 331 (764)
T KOG1063|consen 256 RISFEALLMGHEDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVI 331 (764)
T ss_pred EEehhhhhcCcccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEE
Confidence 023488999999999999988888876 777999987654 3333322 2223357788899999999
Q ss_pred EEEeCCCeEEEEECCC-CeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCC
Q 001160 604 LAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCP 682 (1134)
Q Consensus 604 ~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 682 (1134)
++-+..|..++|.... ..........+|...|..++|+|.|.+|++.+.|.+-|+|-.-..+.....+..+
T Consensus 332 i~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRP-------- 403 (764)
T KOG1063|consen 332 IAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARP-------- 403 (764)
T ss_pred EEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccc--------
Confidence 9999999999998333 2233333344567789999999999999999999999998654221111111000
Q ss_pred CCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCcccee
Q 001160 683 SEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK 762 (1134)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 762 (1134)
T Consensus 404 -------------------------------------------------------------------------------- 403 (764)
T KOG1063|consen 404 -------------------------------------------------------------------------------- 403 (764)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccc----------------cCCCCCCccc------------
Q 001160 763 ALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRT----------------ERNPSGKATA------------ 814 (1134)
Q Consensus 763 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~----------------~~~~~~~~~~------------ 814 (1134)
+.|...+++++|-+....+++++....+|+++.+.. ...|++....
T Consensus 404 ------QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~ 477 (764)
T KOG1063|consen 404 ------QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPG 477 (764)
T ss_pred ------ccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccc
Confidence 113344444444443333444444445555444321 0000000000
Q ss_pred -----------------ccCcccccCCCCC--------ccccccCCCCCCCCceEEEEeccCCCEEEEEe-C-----CeE
Q 001160 815 -----------------NVAPQLWQPPSGT--------LMTNDINESKPTEESAACIALSKNDSYVMSAS-G-----GKV 863 (1134)
Q Consensus 815 -----------------~~~~~~w~~~~~~--------~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-d-----g~i 863 (1134)
.....+..+.... +....+-| | ...|++++.+|+|+++|++. . ..|
T Consensus 478 e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYG--H-GyEv~~l~~s~~gnliASaCKS~~~ehAvI 554 (764)
T KOG1063|consen 478 ETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYG--H-GYEVYALAISPTGNLIASACKSSLKEHAVI 554 (764)
T ss_pred ccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhcc--C-ceeEEEEEecCCCCEEeehhhhCCccceEE
Confidence 0000111111110 01112333 8 99999999999999999986 2 349
Q ss_pred EEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce----EEEEecCcccceEEEEEecCCCEE
Q 001160 864 SLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE----VKTKLKGHQNRITGLAFSPTLNAL 939 (1134)
Q Consensus 864 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~----~~~~l~~h~~~i~~l~~s~d~~~l 939 (1134)
++|+..+...+..+.+|+-.|+.++||| |+++|++.+.|+++.+|...... .....+.|+.-|++..|+||+.++
T Consensus 555 ~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~F 633 (764)
T KOG1063|consen 555 RLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYF 633 (764)
T ss_pred EEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccccee
Confidence 9999999999999999999999999999 99999999999999999875432 123467899999999999999999
Q ss_pred EEEcCCCcEEEEeCCCc--ccccceeeecCCCCCCCCcCceEEEECCC----Cc-EEEEE-ECCeEEEEeCC--------
Q 001160 940 VSSGADAQLCMWSIDKW--EKLKSRFIQAPAGRQSPLVGETKVQFHND----QT-HLLVV-HESQISVYDSK-------- 1003 (1134)
Q Consensus 940 ~s~~~D~~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~fspd----g~-~l~~~-~d~~v~vwd~~-------- 1003 (1134)
||+|+|.+|++|..... +.+... ....+. ..|+.+++.|- .. .+++| ..|.|.+|...
T Consensus 634 aTaSRDK~VkVW~~~~~~d~~i~~~---a~~~~~---~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~ 707 (764)
T KOG1063|consen 634 ATASRDKKVKVWEEPDLRDKYISRF---ACLKFS---LAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTV 707 (764)
T ss_pred EEecCCceEEEEeccCchhhhhhhh---chhccC---CceeeEEeeccccccccceEEEEecccEEEEEecccccccccc
Confidence 99999999999999886 332221 111111 56888888763 22 44555 57899999852
Q ss_pred --CcceeccCCCCCCCCCeEEEEEccCC----------CEEEEEecCCcEEEEeCC
Q 001160 1004 --LECSRSWSPKDALPAPISSAIYSCDG----------LLVYAGFCDGAIGVFDAE 1047 (1134)
Q Consensus 1004 --~~~~~~~~~~~~h~~~v~~v~~s~dg----------~~l~~~~~dg~I~vwd~~ 1047 (1134)
...........+|...|+.+.|+|-. ..|++|+.|.+++++++.
T Consensus 708 ~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 708 GTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 11112233345678899999999742 257999999999999875
No 22
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-37 Score=322.69 Aligned_cols=475 Identities=15% Similarity=0.261 Sum_probs=356.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
+.+.|.++.|+|....+ .++-+.|.|.|||.++...+.+ +.-..-+|.+..|-+-.++++
T Consensus 12 rSdRVKsVd~HPtePw~-la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWI-LAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCceE-EEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence 67899999999999954 4577899999999999887764 233567899999999999999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eeeEEecCCCCCeEEE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSV 503 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~i 503 (1134)
+|+.|..|+||+..+++.+. .|.+|.+-|.+++.+|... +++|+|+|-+|++||.+.+ .+.++|.||...|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999998776 8999999999999999988 8999999999999999864 6778999999999999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCC--CEEEEEeeCCCCCCcEEEEeCCCCeeEE
Q 001160 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG--TRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1134)
+|+|... +.+++++.|++|++|.+....+..++.+|...|+|+.+-+-| .+|++++. |..+++||.++..+++
T Consensus 147 ~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 147 AFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHHH
Confidence 9999855 899999999999999999999999999999999999998855 58888874 8889999999999999
Q ss_pred EecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
++.||.. .|+.++|+|.-..+++|++||+++||+..+-++..++.... ..++|++-.+.+..+++|.++|.|.+ .+
T Consensus 222 TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~i~v-~l 297 (794)
T KOG0276|consen 222 TLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGSVTV-KL 297 (794)
T ss_pred Hhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence 9999998 89999999999999999999999999999988888876543 47999999998888999999888765 22
Q ss_pred CCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccc
Q 001160 662 SDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVA 741 (1134)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1134)
-.+ .+.- ...+.
T Consensus 298 gre-eP~v-------------------------------------------------------------sMd~~------ 309 (794)
T KOG0276|consen 298 GRE-EPAV-------------------------------------------------------------SMDSN------ 309 (794)
T ss_pred cCC-CCce-------------------------------------------------------------eecCC------
Confidence 211 0000 00000
Q ss_pred cccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccc
Q 001160 742 EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLW 821 (1134)
Q Consensus 742 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w 821 (1134)
| -.+|.... .|..+.. -+.+.++
T Consensus 310 ---g-KIiwa~~~-------------------ei~~~~~-------ks~~~~~--------------------------- 332 (794)
T KOG0276|consen 310 ---G-KIIWAVHS-------------------EIQAVNL-------KSVGAQK--------------------------- 332 (794)
T ss_pred ---c-cEEEEcCc-------------------eeeeeec-------eeccCcc---------------------------
Confidence 0 11222111 1111100 0000000
Q ss_pred cCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEe
Q 001160 822 QPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM 901 (1134)
Q Consensus 822 ~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~ 901 (1134)
++..|+.+....+..+.-.-....++.||+|+++++++||.-.||..-..+ ..+.+.-....|++ |.+..|+-.
T Consensus 333 ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~R-----nK~fG~~~eFvw~~-dsne~avRe 406 (794)
T KOG0276|consen 333 EVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALR-----NKAFGSGLEFVWAA-DSNEFAVRE 406 (794)
T ss_pred cccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehh-----hcccccceeEEEcC-CCCeEEEEe
Confidence 111121111111100000112345788999999999999999999743211 12445667889999 777777787
Q ss_pred CCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEE
Q 001160 902 EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQ 981 (1134)
Q Consensus 902 ~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 981 (1134)
.++.|.++ ++.+..+.++.... +..+ -.|.+|...+ ++.+++||.++++.++ ..+ .....+.
T Consensus 407 s~~~vki~--knfke~ksi~~~~~---~e~i-~gg~Llg~~s-s~~~~fydW~~~~lVr-----rI~------v~~k~v~ 468 (794)
T KOG0276|consen 407 SNGNVKIF--KNFKEHKSIRPDMS---AEGI-FGGPLLGVRS-SDFLCFYDWESGELVR-----RIE------VTSKHVY 468 (794)
T ss_pred cCCceEEE--ecceeccccccccc---eeee-cCCceEEEEe-CCeEEEEEcccceEEE-----EEe------eccceeE
Confidence 88999998 67777666653211 1111 2355555555 5569999999988433 222 1246799
Q ss_pred ECCCCcEEEEEECCeEEEEeC
Q 001160 982 FHNDQTHLLVVHESQISVYDS 1002 (1134)
Q Consensus 982 fspdg~~l~~~~d~~v~vwd~ 1002 (1134)
|+.+|.+++++.|....++..
T Consensus 469 w~d~g~lVai~~d~Sfyil~~ 489 (794)
T KOG0276|consen 469 WSDNGELVAIAGDDSFYILKF 489 (794)
T ss_pred EecCCCEEEEEecCceeEEEe
Confidence 999999999998888666655
No 23
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-38 Score=300.41 Aligned_cols=297 Identities=22% Similarity=0.318 Sum_probs=254.8
Q ss_pred EEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEc
Q 001160 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 339 ~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
+..+++ |++.|+.++..+.+..++.+++.|.++.+|++.......- .+...+.||+..|..++.+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G--------------~~~r~~~GHsH~v~dv~~s 72 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG--------------VPVRRLTGHSHFVSDVVLS 72 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC--------------ceeeeeeccceEecceEEc
Confidence 455666 9999999999999888999999999999999876533221 1122378999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCC-
Q 001160 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH- 496 (1134)
Q Consensus 418 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h- 496 (1134)
+||++.++++.|+++++||+.+++..+ .|.+|...|.+++|++|++ .+++|+.|++|++|++. |.+..++..+
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~ 146 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDS 146 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCC
Confidence 999999999999999999999996555 7889999999999999999 79999999999999965 5555665544
Q ss_pred -CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC
Q 001160 497 -EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1134)
Q Consensus 497 -~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1134)
.+.|.|+.|+|..+..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++++ +++.+.+||++
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg----kdg~~~LwdL~ 222 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG----KDGEAMLWDLN 222 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC----CCceEEEEEcc
Confidence 7899999999998779999999999999999999999999999999999999999999999987 48889999999
Q ss_pred CCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC-------CCCcceEEEccCCCEEE
Q 001160 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-------LPASPRLRFNKEGSLLA 648 (1134)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~s~d~~~l~ 648 (1134)
.++.+..+.... .|++++|+|+.-.|+. ..+..|+|||++++..+..+..... .....+++|++||..|+
T Consensus 223 ~~k~lysl~a~~--~v~sl~fspnrywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf 299 (315)
T KOG0279|consen 223 EGKNLYSLEAFD--IVNSLCFSPNRYWLCA-ATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLF 299 (315)
T ss_pred CCceeEeccCCC--eEeeEEecCCceeEee-ccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEE
Confidence 999988877654 7999999998655544 4556699999999988877753321 22346789999999999
Q ss_pred EEeCCCcEEEEECC
Q 001160 649 VTTSDNGIKILANS 662 (1134)
Q Consensus 649 ~~~~dg~i~iw~~~ 662 (1134)
+|..|+.|++|.+.
T Consensus 300 ~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 300 AGYTDNVIRVWQVA 313 (315)
T ss_pred eeecCCcEEEEEee
Confidence 99999999999864
No 24
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=7.7e-36 Score=324.61 Aligned_cols=559 Identities=14% Similarity=0.196 Sum_probs=410.3
Q ss_pred eEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEE
Q 001160 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1134)
Q Consensus 338 ~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~ 416 (1134)
.++..-+ +.+.|+|++=..+-- ++|+ ...|.+|-- |+.+. ....+|...|.-+.
T Consensus 67 ~ll~vs~~lp~~I~alas~~~~v-y~A~---g~~i~~~~r--gk~i~------------------~~~~~~~a~v~~l~- 121 (910)
T KOG1539|consen 67 NLLFVSKPLPDKITALASDKDYV-YVAS---GNKIYAYAR--GKHIR------------------HTTLLHGAKVHLLL- 121 (910)
T ss_pred EEEEecCCCCCceEEEEecCceE-EEec---CcEEEEEEc--cceEE------------------EEeccccceEEEEe-
Confidence 3343333 788999998776642 2222 346666653 22221 12445666666554
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCC-Cccce-eeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEec
Q 001160 417 GPDGLMLGVAFSKHIVHLYTYNPT-GELRQ-HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1134)
Q Consensus 417 spdg~~las~~~dg~i~iwd~~~~-~~~~~-~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~ 494 (1134)
+=|.+++++..++.+.||+..++ +.... ...++...+.|+++. +|.---..++.|+.+|.+.+|++++++.+++++
T Consensus 122 -~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~ 199 (910)
T KOG1539|consen 122 -PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQ 199 (910)
T ss_pred -eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEec
Confidence 35789999999999999999884 22111 112222222377664 344322268899999999999999999999999
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeC
Q 001160 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1134)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1134)
++...|+++.-+|-- +.++.|..+|+|.++++...+.+..+....+.|++++|.-||+.+++.+. ..|.+.+||+
T Consensus 200 ~~~s~IT~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDL 274 (910)
T KOG1539|consen 200 EFFSRITAIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDL 274 (910)
T ss_pred ccccceeEeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEc
Confidence 999999999987766 79999999999999999999999999988899999999999998887663 4677999999
Q ss_pred CCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCe----eEEEEeCCCCCCCcceEEEc-cCCCEEEE
Q 001160 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN----MLTTVDADGGLPASPRLRFN-KEGSLLAV 649 (1134)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s-~d~~~l~~ 649 (1134)
+..+.+......+.+.+....|.|....+++++.|+.+++|=.+++. .+..-.+ |..+..++.|. .+|..+.+
T Consensus 275 e~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~G--Hs~Pp~~irfy~~~g~~ils 352 (910)
T KOG1539|consen 275 EKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGG--HSAPPSCIRFYGSQGHFILS 352 (910)
T ss_pred CCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccC--CCCCchheeeeccCcEEEEe
Confidence 99988888775554488899999999999999999999888665433 3333344 45577899998 58899999
Q ss_pred EeCCCcEEEEECCCchhhhhhhc-CCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCC
Q 001160 650 TTSDNGIKILANSDGVRLLRMLE-GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTI 728 (1134)
Q Consensus 650 ~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1134)
++.|++++.+++... ..-+.+. .|.... -
T Consensus 353 a~~Drt~r~fs~~~e-~~~~~l~~~~~~~~--------------~----------------------------------- 382 (910)
T KOG1539|consen 353 AKQDRTLRSFSVISE-SQSQELGQLHNKKR--------------A----------------------------------- 382 (910)
T ss_pred cccCcchhhhhhhHH-HHhHhhcccccccc--------------c-----------------------------------
Confidence 999999999887544 1111111 111000 0
Q ss_pred CcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecC-----CcceEEeeccCeeEEeeccc
Q 001160 729 DGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS-----GLSLLALASNAVHKLWKWQR 803 (1134)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~~l~~~~~dg~v~vw~~~~ 803 (1134)
+.+.+.... ...-.+|..+++... .+.+.+.-++...+.|++..
T Consensus 383 ----------------kk~~~~~~~---------------~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n 431 (910)
T KOG1539|consen 383 ----------------KKVNVFSTE---------------KLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRN 431 (910)
T ss_pred ----------------ccccccchh---------------hhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccC
Confidence 000000000 001122333333321 12223333346677777643
Q ss_pred ccCCCCCCcccccCcccccCCCCCcc--ccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEe---
Q 001160 804 TERNPSGKATANVAPQLWQPPSGTLM--TNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF--- 877 (1134)
Q Consensus 804 ~~~~~~~~~~~~~~~~~w~~~~~~~~--~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~--- 877 (1134)
.. .|+-. ...++. . ...+++++.++.|++.+.|. .|.|.+|++++|-....+
T Consensus 432 ~~-------------------~G~~~L~~~~~~~--~-~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~ 489 (910)
T KOG1539|consen 432 KT-------------------SGRHVLDPKRFKK--D-DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDS 489 (910)
T ss_pred cc-------------------cccEEecCccccc--c-CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccC
Confidence 11 11100 000111 1 57899999999999999998 899999999999998888
Q ss_pred cCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcc
Q 001160 878 MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 957 (1134)
Q Consensus 878 ~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~ 957 (1134)
..|.++|+.++... -++.+++++.+|.+.+||..+..++..++ -...+.++..+.....+|.+..|-.|+++|+.+.+
T Consensus 490 ~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k 567 (910)
T KOG1539|consen 490 PAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK 567 (910)
T ss_pred ccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhh
Confidence 57999999999988 78899999999999999999888888877 34568889999888999999999999999999866
Q ss_pred cccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEE
Q 001160 958 KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAG 1035 (1134)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~ 1035 (1134)
+.+...||. ..+++++|||||++|++ +.|++|++||+ ++.++..+.. ..+++++.|||+|.+|||+
T Consensus 568 -----vvR~f~gh~---nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v----d~~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 568 -----VVREFWGHG---NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV----DSPCTSLSFSPNGDFLATV 635 (910)
T ss_pred -----hhHHhhccc---cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec----CCcceeeEECCCCCEEEEE
Confidence 566777887 58999999999999999 67999999999 8888776655 5799999999999999999
Q ss_pred ecC-CcEEEEeCC
Q 001160 1036 FCD-GAIGVFDAE 1047 (1134)
Q Consensus 1036 ~~d-g~I~vwd~~ 1047 (1134)
..| .-|++|.=.
T Consensus 636 Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 636 HVDQNGIYLWSNK 648 (910)
T ss_pred EecCceEEEEEch
Confidence 999 669999643
No 25
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.1e-36 Score=322.39 Aligned_cols=593 Identities=15% Similarity=0.183 Sum_probs=408.8
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCC---EEEEEeC
Q 001160 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL---MLGVAFS 428 (1134)
Q Consensus 352 v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~---~las~~~ 428 (1134)
..|.|.+ ++|.|. ...|.+||..+..... .+.||..+|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafGa-~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFGA-GPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEecC-CceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 3456665 455554 5789999977653322 2789999999999999888 8999999
Q ss_pred CCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe--eeEEecCCCCC--eEEEE
Q 001160 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR--KQYTFEGHEAP--VYSVC 504 (1134)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~--~~~~~~~h~~~--v~~i~ 504 (1134)
|+.|++|.+.. +.+.....+++|...+.| +..... .......|+.+.+||.+..+ +...+.-..+. -.|++
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~c--v~a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKECVC--VVARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeEEE--EEeeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999994 444555577777655544 443333 22333789999999985555 22222212222 23455
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCC--CceeEecCCCCcEEEEEECCCCC---EEEEEeeCCCCCCcEEEEeCCCCe-
Q 001160 505 PHHKESIQFIFSTAIDGKIKAWLYDYL--GSRVDYDAPGNWCTMMAYSADGT---RLFSCGTSKEGESHLVEWNESEGA- 578 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~~~~~~~~i~~wd~~~~~- 578 (1134)
+.+..+.-.++.|+.+..|.++.-.+. .....+.+|..+|.+++|...+. +|++++ +|..|+||.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S----QD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSS----QDRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecC----CceEEEEEEEEecCC
Confidence 555443345666777888888865533 33557889999999999987655 444554 58889999874322
Q ss_pred --------------------eEEE----------ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCe--eEEEE
Q 001160 579 --------------------IKRT----------YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--MLTTV 626 (1134)
Q Consensus 579 --------------------~~~~----------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~ 626 (1134)
.... +.||.+ .|.++.|+|.+..|++++.|.++.+|...+.. -+...
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~v 307 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVV 307 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEE
Confidence 1111 237777 99999999999999999999999999887642 22222
Q ss_pred e--CC-CCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccc
Q 001160 627 D--AD-GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 703 (1134)
Q Consensus 627 ~--~~-~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1134)
. .- +.........|+|++..+++-+..|..++|...+..
T Consensus 308 RlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~-------------------------------------- 349 (764)
T KOG1063|consen 308 RLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT-------------------------------------- 349 (764)
T ss_pred EeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc--------------------------------------
Confidence 1 11 223347889999999999999999999999832220
Q ss_pred cccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecC
Q 001160 704 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS 783 (1134)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 783 (1134)
.|... .-..+|...|+.++|.|.
T Consensus 350 ---------------------------------------------~w~~~------------~~iSGH~~~V~dv~W~ps 372 (764)
T KOG1063|consen 350 ---------------------------------------------FWTQE------------PVISGHVDGVKDVDWDPS 372 (764)
T ss_pred ---------------------------------------------ceeec------------cccccccccceeeeecCC
Confidence 01100 001348889999999999
Q ss_pred CcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeC-Ce
Q 001160 784 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG-GK 862 (1134)
Q Consensus 784 g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sd-g~ 862 (1134)
|.+|++.+.|.+-|++.-...+. . |. .+. +..-| ...++|++|-+....+++|.| .-
T Consensus 373 GeflLsvs~DQTTRlFa~wg~q~-------~------wH-----Eia---RPQiH-GyDl~c~~~vn~~~~FVSgAdEKV 430 (764)
T KOG1063|consen 373 GEFLLSVSLDQTTRLFARWGRQQ-------E------WH-----EIA---RPQIH-GYDLTCLSFVNEDLQFVSGADEKV 430 (764)
T ss_pred CCEEEEeccccceeeeccccccc-------c------ee-----eec---ccccc-cccceeeehccCCceeeeccccee
Confidence 99999999999999875321110 0 11 111 11126 778999999885556666664 56
Q ss_pred EEEEECCC-------------------------------------------Ce---------------------------
Q 001160 863 VSLFNMMT-------------------------------------------FK--------------------------- 872 (1134)
Q Consensus 863 i~vwd~~~-------------------------------------------~~--------------------------- 872 (1134)
+|+|+... |.
T Consensus 431 lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq 510 (764)
T KOG1063|consen 431 LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQ 510 (764)
T ss_pred eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHH
Confidence 88887621 00
Q ss_pred ------EEEEecCCCCceEEEEEcCCCCcEEEEEeCC-----CcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEE
Q 001160 873 ------VMTMFMSPPPAATFLAFHPQDNNIIAIGMED-----SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVS 941 (1134)
Q Consensus 873 ------~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d-----g~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s 941 (1134)
.++.+.||...|.+++.+| +++++|+++.. ..|++|+..+...+..+.+|+-.|+.|+|||||++|++
T Consensus 511 ~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLs 589 (764)
T KOG1063|consen 511 QNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLS 589 (764)
T ss_pred HhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEE
Confidence 0112347889999999999 99999999855 35999999999888899999999999999999999999
Q ss_pred EcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeC-CC--cceeccCCCCCCC
Q 001160 942 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KL--ECSRSWSPKDALP 1017 (1134)
Q Consensus 942 ~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~-~~--~~~~~~~~~~~h~ 1017 (1134)
+++|.++.+|........... ......|. .-|.++.|+||++++++ +.|++|+||.. +. +++..+. ...+.
T Consensus 590 vsRDRt~sl~~~~~~~~~e~~-fa~~k~Ht---RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a-~~~~~ 664 (764)
T KOG1063|consen 590 VSRDRTVSLYEVQEDIKDEFR-FACLKAHT---RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFA-CLKFS 664 (764)
T ss_pred eecCceEEeeeeecccchhhh-hccccccc---eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhc-hhccC
Confidence 999999999998654322111 22234444 46788999999999999 67999999999 44 4554432 23458
Q ss_pred CCeEEEEEcc-----CCCEEEEEecCCcEEEEeCCCcceeeecC---CcccccccccCCCCccEEEeecCC---------
Q 001160 1018 APISSAIYSC-----DGLLVYAGFCDGAIGVFDAETLRFRCRIG---PSAYIPTYAVSNTAHPLVIAPHPS--------- 1080 (1134)
Q Consensus 1018 ~~v~~v~~s~-----dg~~l~~~~~dg~I~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--------- 1080 (1134)
..|+++++.| .+..+++|-+.|.|.+|....-....+.. .....+. ..++...+.-+.|.|.
T Consensus 665 ~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~aV~rl~w~p~~~~~~~~~~ 743 (764)
T KOG1063|consen 665 LAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCA-TIGPDSAVNRLLWRPTCSDDWVEDK 743 (764)
T ss_pred CceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeecccccc-ccChHHhhheeEecccccccccccc
Confidence 8999999986 23378899999999999965211111111 0010111 1123344456777764
Q ss_pred CCCEEEEEeCCCcEEEEecC
Q 001160 1081 EPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1081 d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
+...|++|++|.+++++++.
T Consensus 744 ~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 744 EWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ceeEEeeecccceeEEeecc
Confidence 22456999999999999875
No 26
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-36 Score=330.47 Aligned_cols=585 Identities=15% Similarity=0.231 Sum_probs=400.5
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
+..|.+++|+|...+ +.++-..|.|++||++-+.++.. +.+|.++|..++|+|++.++++
T Consensus 9 SsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFVS 68 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFVS 68 (1202)
T ss_pred cccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEEe
Confidence 568999999999985 55778899999999999988875 6789999999999999999999
Q ss_pred EeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEe
Q 001160 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~ 505 (1134)
|+.|-.|+||+.++.+++. ++.||-+.|..+.|++.-. +|+++|+|.+|+||+.++++++..+.||...|.|..|
T Consensus 69 GGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqF 143 (1202)
T KOG0292|consen 69 GGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQF 143 (1202)
T ss_pred cCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeecc
Confidence 9999999999999987665 8889999999999999988 8999999999999999999999999999999999999
Q ss_pred eccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecC
Q 001160 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1134)
Q Consensus 506 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1134)
+|.. +.++++|.|.+||+||+...+....-.+ ++.=...+..+ ...++-..+.-....+.|
T Consensus 144 hptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~-----------~~dLfg~~DaVVK~VLEG 204 (1202)
T KOG0292|consen 144 HPTE--DLIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQG-----------NSDLFGQTDAVVKHVLEG 204 (1202)
T ss_pred CCcc--ceEEEecccceEEEEeecchhccCCCCC------Cchhhhhcccc-----------chhhcCCcCeeeeeeecc
Confidence 9987 7999999999999999975443322111 00000001110 011111111223456788
Q ss_pred ccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCch
Q 001160 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1134)
Q Consensus 586 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~ 665 (1134)
|.. .|+.++|+|.-..+++|++|+.|++|.+..-+.-..-...+|.+.|.++-|+|...++++.+.|++|+|||+...
T Consensus 205 HDR-GVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR- 282 (1202)
T KOG0292|consen 205 HDR-GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR- 282 (1202)
T ss_pred ccc-ccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-
Confidence 877 899999999999999999999999999987665554445566779999999999999999999999999999877
Q ss_pred hhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccC
Q 001160 666 RLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVD 745 (1134)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (1134)
..++.++..... +|.+ ..-|..+.++++.|+
T Consensus 283 t~v~tfrrendR---------------------------FW~l----------------------aahP~lNLfAAgHDs 313 (1202)
T KOG0292|consen 283 TSVQTFRRENDR---------------------------FWIL----------------------AAHPELNLFAAGHDS 313 (1202)
T ss_pred cceeeeeccCCe---------------------------EEEE----------------------EecCCcceeeeecCC
Confidence 555555443321 1111 122456677888888
Q ss_pred ccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCC
Q 001160 746 KIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPS 825 (1134)
Q Consensus 746 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~ 825 (1134)
.+.+|.++. +.++ .+++ +..|+-.- +..|+-+|+.+.+..+-..
T Consensus 314 Gm~VFkleR-----------------Erpa--~~v~--~n~LfYvk-d~~i~~~d~~t~~d~~v~~-------------- 357 (1202)
T KOG0292|consen 314 GMIVFKLER-----------------ERPA--YAVN--GNGLFYVK-DRFIRSYDLRTQKDTAVAS-------------- 357 (1202)
T ss_pred ceEEEEEcc-----------------cCce--EEEc--CCEEEEEc-cceEEeeeccccccceeEe--------------
Confidence 888888773 1112 2222 22233322 7788888876533211110
Q ss_pred CCccccccCC-CCCCCCceEEEEeccCCCEEEEEe---CCeEEEEECCCCeEEEEe-c--CCCCceEEEEEcCCCCcEEE
Q 001160 826 GTLMTNDINE-SKPTEESAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMF-M--SPPPAATFLAFHPQDNNIIA 898 (1134)
Q Consensus 826 ~~~~~~~~~~-~~h~~~~i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~-~--~~~~~i~~l~~s~~~~~~la 898 (1134)
+.. ... ..+..++.++|....+..++ .|...++.+........- . .......++-.. .+++.+
T Consensus 358 -------lr~~g~~-~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fva--rNrfav 427 (1202)
T KOG0292|consen 358 -------LRRPGTL-WQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVA--RNRFAV 427 (1202)
T ss_pred -------ccCCCcc-cCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEE--ecceEE
Confidence 111 001 46788999999777666664 466666665432110000 0 011122222222 223333
Q ss_pred EEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCce
Q 001160 899 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGET 978 (1134)
Q Consensus 899 sg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~ 978 (1134)
.--.+..+.+=++.+. ..+.+..- ..+..+-+..+|.+|+.. ...|.++|++..+...+..+ ..+.
T Consensus 428 l~k~~~~v~ik~l~N~-vtkkl~~~-~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~si~~----------s~vk 493 (1202)
T KOG0292|consen 428 LDKSNEQVVIKNLKNK-VTKKLLLP-ESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVGSIKV----------SKVK 493 (1202)
T ss_pred EEecCcceEEecccch-hhhcccCc-ccccceeeccCccEEEEc--CCeEEEEEeecceEEEEEec----------Ccee
Confidence 3333455555555432 22333221 234556666677666543 34599999998764332211 3578
Q ss_pred EEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCc
Q 001160 979 KVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1058 (1134)
Q Consensus 979 ~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 1058 (1134)
.+.||+|+.+++.-+..+|.+.+.+...+..+.. .-.|.+-+|..||-++++....=.-.+-+-++| .+.++..
T Consensus 494 yvvws~dm~~vAll~Kh~i~i~~kkL~l~~sihE----tiriksgawde~gVfiYtT~nHikYal~~GD~G-IikTLd~- 567 (1202)
T KOG0292|consen 494 YVVWSNDMSRVALLSKHTITIADKKLELLCSIHE----TIRIKSGAWDEDGVFIYTTLNHIKYALENGDSG-IIKTLDK- 567 (1202)
T ss_pred EEEEcCccchhhhcccceEEEEecchhheecchh----eeEeeeceeccCceEEEEehhhhhhhhccCCcc-eEEeccc-
Confidence 9999999999999888999999987776665543 467889999999988887654322222222222 2334332
Q ss_pred ccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCcccc
Q 001160 1059 AYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKW 1106 (1134)
Q Consensus 1059 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~~~~ 1106 (1134)
.++++.+ .|+.+.+-..|+.+....+...|-.|
T Consensus 568 ----------~iyitkv-----~gn~V~cl~rd~~~~~~~IDptEy~F 600 (1202)
T KOG0292|consen 568 ----------PIYITKV-----KGNKVFCLNRDGEIECLTIDPTEYRF 600 (1202)
T ss_pred ----------ceEEEEe-----eCCEEEEEecCCCeEEEeechHHHHH
Confidence 2555555 57899999999999998887666433
No 27
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.5e-37 Score=296.09 Aligned_cols=249 Identities=16% Similarity=0.220 Sum_probs=229.9
Q ss_pred ccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEE
Q 001160 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iw 482 (1134)
+|+||.+.|.++.|++|+++|++++.||.+.|||.-+..... .+.-....|..++|+|.|+ ++|.|+-|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 378999999999999999999999999999999998876555 4445678899999999999 89999999999999
Q ss_pred ECCCC------eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECC-CCCE
Q 001160 483 DVVAG------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA-DGTR 555 (1134)
Q Consensus 483 d~~~~------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 555 (1134)
++.+. +..+.+.+|.+.+.++.|..+ ..|++++.|.+..+||+++++....+.+|.+.|.++.++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD---~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD---NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCC---CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 99865 345679999999999999763 6899999999999999999999999999999999999999 9999
Q ss_pred EEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCc
Q 001160 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1134)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1134)
+++++. |...++||++.+..+++|.+|.. .|++++|.|+|.-+++|++|++.++||++..+.+..+.......+|
T Consensus 202 FvSg~c----D~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGI 276 (343)
T ss_pred EEeccc----ccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCc
Confidence 999986 77799999999999999999998 8999999999999999999999999999999999999877777889
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 636 ~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
++++||..|++|++|..|.++.+||.-.+
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeecccc
Confidence 99999999999999999999999997555
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=283.61 Aligned_cols=285 Identities=18% Similarity=0.280 Sum_probs=244.7
Q ss_pred CCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001160 358 QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTY 437 (1134)
Q Consensus 358 g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~ 437 (1134)
..-|||++++|.+|++|...+|.+..+ +....+.|+.+.+.||++.||+++.. .|++||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCC-eeEEEEc
Confidence 345899999999999999999998875 34456789999999999999999655 5999999
Q ss_pred CCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEE
Q 001160 438 NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 517 (1134)
Q Consensus 438 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~ 517 (1134)
+++..- +..++.+|...|+++.|..||+ +++|||+||+++|||++...+.+.++ |..+|+++..+|.. ..|++|
T Consensus 69 ~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~ 142 (311)
T KOG0315|consen 69 NSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISG 142 (311)
T ss_pred cCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEee
Confidence 998764 4558899999999999999999 89999999999999999977766665 78999999999976 789999
Q ss_pred ecCCeEEEEEccCCCceeEec-CCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC------eeEEEecCccCcc
Q 001160 518 AIDGKIKAWLYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG------AIKRTYSGFRKRS 590 (1134)
Q Consensus 518 ~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~------~~~~~~~~~~~~~ 590 (1134)
..+|.|++||+.+..+...+. .....|.++...|||++++++. ..|..++|++-++ +++..++.|.. .
T Consensus 143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n----nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~ 217 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN----NKGNCYVWRLLNHQTASELEPVHKFQAHNG-H 217 (311)
T ss_pred cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec----CCccEEEEEccCCCccccceEhhheecccc-e
Confidence 999999999999876655444 3456899999999999999885 4788999998754 35667888877 7
Q ss_pred eEEEEEeCCCCEEEEEeCCCeEEEEECCCC-eeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhh
Q 001160 591 LGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1134)
Q Consensus 591 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~ 669 (1134)
+..+.+|||+++|+++|.|.+++||+.++. +....++ ++...+..++||.||.+|++|+.|+.+++|++..+ +.++
T Consensus 218 il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~--gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~ 294 (311)
T KOG0315|consen 218 ILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT--GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEVR 294 (311)
T ss_pred EEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee--cCCceEEeeeeccCccEEEecCCCCceeecccccC-ceee
Confidence 888889999999999999999999999988 3334444 44568999999999999999999999999999999 6666
Q ss_pred hhcCCcc
Q 001160 670 MLEGRAM 676 (1134)
Q Consensus 670 ~~~~~~~ 676 (1134)
...+|..
T Consensus 295 qy~gh~K 301 (311)
T KOG0315|consen 295 QYQGHHK 301 (311)
T ss_pred ecCCccc
Confidence 7777654
No 29
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=4e-34 Score=293.41 Aligned_cols=539 Identities=17% Similarity=0.219 Sum_probs=387.5
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCC
Q 001160 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1134)
Q Consensus 351 ~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg 430 (1134)
.+-+-|.|..+...+ +.+.+++++..... .+.+|...|.|++.+||.-.+|+|-..|
T Consensus 70 Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr--------------------~y~GH~ddikc~~vHPdri~vatGQ~ag 126 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVA---AVGVLYNWEERSQR--------------------HYLGHNDDIKCMAVHPDRIRVATGQGAG 126 (626)
T ss_pred eeEEccCccEEEEec---cEEEEEeehhhhcc--------------------cccCCCCceEEEeecCCceeeccCcccc
Confidence 455677777433333 35677777553222 1578999999999999999999875444
Q ss_pred --------eEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCc--EEEEEEcCCCcEEEEECCCCeeeEEecCCCCCe
Q 001160 431 --------IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ--LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (1134)
Q Consensus 431 --------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~--~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v 500 (1134)
.+++||..+-..+. .+......|.|++|++-+.. +..+--+.+..+.+||.+.+......+..+..|
T Consensus 127 ~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v 203 (626)
T KOG2106|consen 127 TSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVV 203 (626)
T ss_pred cCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceE
Confidence 59999977655444 55566778999999985332 222334567789999999988887777778889
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeE---ecC-CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC
Q 001160 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD---YDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1134)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~---~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1134)
....|+|..+ -++.....+.+.+|+.+.+..... +.. ....|.|++|.++|..+-. |.+|.|.||+..+
T Consensus 204 ~~a~FHPtd~--nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTg-----DS~G~i~Iw~~~~ 276 (626)
T KOG2106|consen 204 FLATFHPTDP--NLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITG-----DSGGNILIWSKGT 276 (626)
T ss_pred EEEEeccCCC--cEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEee-----cCCceEEEEeCCC
Confidence 9999999874 444555578999999987665442 222 2357999999999987643 3488899999998
Q ss_pred CeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcE
Q 001160 577 GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1134)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i 656 (1134)
.+..+....|.+ .|.+++...+|.. ++|+.|+.|..|| ..-+.++..+.+.....|..++=...+ |++|+..+.|
T Consensus 277 ~~~~k~~~aH~g-gv~~L~~lr~Gtl-lSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~i 351 (626)
T KOG2106|consen 277 NRISKQVHAHDG-GVFSLCMLRDGTL-LSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFI 351 (626)
T ss_pred ceEEeEeeecCC-ceEEEEEecCccE-eecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccceE
Confidence 888887777666 8999999999865 4599999999999 556666666666666677766643322 7777777666
Q ss_pred EEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCccccccc
Q 001160 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 736 (1134)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1134)
..=.++++..
T Consensus 352 L~Gt~~~~f~---------------------------------------------------------------------- 361 (626)
T KOG2106|consen 352 LQGTLENGFT---------------------------------------------------------------------- 361 (626)
T ss_pred EEeeecCCce----------------------------------------------------------------------
Confidence 5544443310
Q ss_pred ccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCccccc
Q 001160 737 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANV 816 (1134)
Q Consensus 737 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~ 816 (1134)
+.-.+|......++..|+..++++++.|+.+++|+-. +
T Consensus 362 -----------------------------~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~--k----------- 399 (626)
T KOG2106|consen 362 -----------------------------LTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDH--K----------- 399 (626)
T ss_pred -----------------------------EEEEecccceeeEEcCCChhheeeccCcceEEEccCC--c-----------
Confidence 0002366678899999999999999999999999711 0
Q ss_pred CcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCc
Q 001160 817 APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN 895 (1134)
Q Consensus 817 ~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 895 (1134)
.+|.. . - ..++.|+.|+|.| .+|.|. .|...|.|.++...+..-. ...++++++|+| +|.
T Consensus 400 --~~wt~----------~---~-~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp-~G~ 460 (626)
T KOG2106|consen 400 --LEWTK----------I---I-EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSP-DGA 460 (626)
T ss_pred --eeEEE----------E---e-cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcC-CCC
Confidence 12221 1 1 6778999999999 899998 8999999999855544444 488999999999 999
Q ss_pred EEEEEeCCCcEEEEEcCCce-EEEEe-cCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCC
Q 001160 896 IIAIGMEDSSVQIYNVRVDE-VKTKL-KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSP 973 (1134)
Q Consensus 896 ~lasg~~dg~i~iwd~~~~~-~~~~l-~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~ 973 (1134)
+||+|+.|+.|+||.+..+. ..... +.|..+|+.+.||+|+++|.+.+.|-.|..|.-...+..
T Consensus 461 ~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~-------------- 526 (626)
T KOG2106|consen 461 FLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQI-------------- 526 (626)
T ss_pred EEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCccc--------------
Confidence 99999999999999987543 22222 334488999999999999999999999999943332211
Q ss_pred CcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceee
Q 001160 974 LVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRC 1053 (1134)
Q Consensus 974 ~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~ 1053 (1134)
..+..+.|....-.|-. ......|...|..++-|.+.+++|+|...|.|++|...--...+
T Consensus 527 -ts~kDvkW~t~~c~lGF------------------~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA 587 (626)
T KOG2106|consen 527 -TSVKDVKWATYTCTLGF------------------EVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRA 587 (626)
T ss_pred -ceecceeeeeeEEEEEE------------------EEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcc
Confidence 11333443322111100 01113346778888889999999999999999999987544332
Q ss_pred ecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEec
Q 001160 1054 RIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1099 (1134)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~ 1099 (1134)
.. |++ -+|+..+.+++|...| ..+++.+.|.+|..|++
T Consensus 588 ~~--he~-----~ghs~~vt~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 588 PS--HEY-----GGHSSHVTNVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred cc--eee-----ccccceeEEEEEeeCC-ceEEecCCCceEEEEEe
Confidence 22 222 2555778899999966 56666669999999986
No 30
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-34 Score=304.09 Aligned_cols=464 Identities=16% Similarity=0.212 Sum_probs=350.4
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+..++..|.++.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-+--+ ++++|++|..|+|++
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 34589999999999999999999999999999999987776 5666788999999998777 899999999999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC-CceeEecCCCCcEEEEEECC-CCCEEEEEee
Q 001160 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSA-DGTRLFSCGT 561 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 561 (1134)
..+++.++.|..|.+.|.+++.+|.. .+++++|+|-+|++||.+.. .+...+.+|.+.|.+++|+| |.+.+++++.
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999999987 79999999999999999864 45678999999999999999 5577888886
Q ss_pred CCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCC--CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001160 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1134)
|++|++|.+.+..+..++.+|.. .|+|+.+-+.| .++++|++|.+|+|||..+..+++++.+|.+ .|..+.
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~ 234 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFVF 234 (794)
T ss_pred ----cccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEEE
Confidence 88899999999999999999988 89999998755 7999999999999999999999999998855 799999
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCC
Q 001160 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (1134)
Q Consensus 640 ~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1134)
|+|.-.++++|+.||+++||+..+- ++...+..
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~---------------------------------------------- 267 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNY---------------------------------------------- 267 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhhhc----------------------------------------------
Confidence 9999999999999999999998765 33222211
Q ss_pred cccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEe
Q 001160 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLW 799 (1134)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw 799 (1134)
.-.++.+++..+.+..++.|..+|.+.+=
T Consensus 268 ---------------------------------------------------gleRvW~I~~~k~~~~i~vG~Deg~i~v~ 296 (794)
T KOG0276|consen 268 ---------------------------------------------------GLERVWCIAAHKGDGKIAVGFDEGSVTVK 296 (794)
T ss_pred ---------------------------------------------------CCceEEEEeecCCCCeEEEeccCCcEEEE
Confidence 22456677777777777777777766551
Q ss_pred ecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeC--CeEEEE------ECCCC
Q 001160 800 KWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG--GKVSLF------NMMTF 871 (1134)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sd--g~i~vw------d~~~~ 871 (1134)
+ ......+..++.|+.+-+... -.+.+- ++..|
T Consensus 297 -l--------------------------------------greeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~Dg 337 (794)
T KOG0276|consen 297 -L--------------------------------------GREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDG 337 (794)
T ss_pred -c--------------------------------------cCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCC
Confidence 1 122223444555544433221 111111 22233
Q ss_pred eEEEE----ecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCc
Q 001160 872 KVMTM----FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947 (1134)
Q Consensus 872 ~~~~~----~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~ 947 (1134)
+.+.. +-.-.-....++-+| +|++++++ .||.-.||..-..+ ..+.+.-....|++|....+.--.++.
T Consensus 338 ErL~LsvKeLgs~eiyPq~L~hsP-NGrfV~Vc-gdGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~ 410 (794)
T KOG0276|consen 338 ERLPLSVKELGSVEIYPQTLAHSP-NGRFVVVC-GDGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGN 410 (794)
T ss_pred ccccchhhhccccccchHHhccCC-CCcEEEEe-cCccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCc
Confidence 32111 111111124578889 88888754 68899998632211 123455677899999888888877888
Q ss_pred EEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEc
Q 001160 948 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYS 1026 (1134)
Q Consensus 948 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s 1026 (1134)
|+++ ++.+..++.... ..+.+--.|.+|...+++.+++||. ++..++.+.. ....+.|+
T Consensus 411 vki~--knfke~ksi~~~------------~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v------~~k~v~w~ 470 (794)
T KOG0276|consen 411 VKIF--KNFKEHKSIRPD------------MSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEV------TSKHVYWS 470 (794)
T ss_pred eEEE--ecceeccccccc------------cceeeecCCceEEEEeCCeEEEEEcccceEEEEEee------ccceeEEe
Confidence 9888 555533322111 1122333466777788999999998 7777777644 35678999
Q ss_pred cCCCEEEEEecCCcEEEEeC
Q 001160 1027 CDGLLVYAGFCDGAIGVFDA 1046 (1134)
Q Consensus 1027 ~dg~~l~~~~~dg~I~vwd~ 1046 (1134)
.+|.+++.++.|. .++...
T Consensus 471 d~g~lVai~~d~S-fyil~~ 489 (794)
T KOG0276|consen 471 DNGELVAIAGDDS-FYILKF 489 (794)
T ss_pred cCCCEEEEEecCc-eeEEEe
Confidence 9999988887554 444443
No 31
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-35 Score=282.78 Aligned_cols=296 Identities=17% Similarity=0.205 Sum_probs=247.2
Q ss_pred cccccceEEEEEecCC-cceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEE
Q 001160 769 SIAASKVVRLIYTNSG-LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 847 (1134)
Q Consensus 769 ~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~ 847 (1134)
.+|.+.|+.++..+.+ ..+++++.|..+.+|++... |.+.|.+++. +.+ | ...|..++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~-~~G--H-sH~v~dv~ 70 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR-LTG--H-SHFVSDVV 70 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee-eec--c-ceEecceE
Confidence 3499999999999874 56778888999999998653 2233444432 556 7 88999999
Q ss_pred eccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecC-ccc
Q 001160 848 LSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG-HQN 925 (1134)
Q Consensus 848 ~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~-h~~ 925 (1134)
.++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.|++|+.|.+|.+|++..+........ |.+
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHRE 149 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcC
Confidence 999999999999 99999999999999999999999999999999 899999999999999999875544433332 378
Q ss_pred ceEEEEEecC--CCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeC
Q 001160 926 RITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS 1002 (1134)
Q Consensus 926 ~i~~l~~s~d--~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~ 1002 (1134)
-|.++.|+|+ ..+|+++|.|++|++||+.+.+ ......||. ..++.+++||||..+++ +.||.+.+||+
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~LwdL 221 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLWDL 221 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEEEc
Confidence 8999999998 6899999999999999999977 344556666 57999999999999999 57999999999
Q ss_pred -CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCC
Q 001160 1003 -KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSE 1081 (1134)
Q Consensus 1003 -~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 1081 (1134)
+++.+..+ .|...|.+++|+|+...|+.+ .+..|+|||++++..+.++......+. ........++++|++ |
T Consensus 222 ~~~k~lysl----~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s-~~~~~~~clslaws~-d 294 (315)
T KOG0279|consen 222 NEGKNLYSL----EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPS-SKAGDPICLSLAWSA-D 294 (315)
T ss_pred cCCceeEec----cCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccc-cccCCcEEEEEEEcC-C
Confidence 66665443 347899999999998777665 566799999999999999887654442 234457888999999 8
Q ss_pred CCEEEEEeCCCcEEEEecCC
Q 001160 1082 PNQIALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1082 ~~~l~s~~~Dg~v~vW~~~~ 1101 (1134)
|..|.+|..|+.|++|.+..
T Consensus 295 G~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 295 GQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred CcEEEeeecCCcEEEEEeec
Confidence 99999999999999999753
No 32
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-36 Score=296.64 Aligned_cols=308 Identities=19% Similarity=0.288 Sum_probs=271.9
Q ss_pred eCCCCCCccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeecccccccccc
Q 001160 321 AGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQ 400 (1134)
Q Consensus 321 s~~g~~~~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1134)
.|.+.......|-..+....+...|..+|+.+-|+|+-. ++++++.|++|++||..+|+....
T Consensus 83 ~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~---------------- 145 (406)
T KOG0295|consen 83 DPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS---------------- 145 (406)
T ss_pred CCCcCccChhhcCCCCCchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh----------------
Confidence 344433333334444445555556899999999999986 889999999999999999998664
Q ss_pred ccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEE
Q 001160 401 NALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1134)
Q Consensus 401 ~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~ 480 (1134)
+.||.+.|..++|+..|++||+++.|-.+.+||.++. .++...+.+|...|.++.|-|.|. +|++++.|.+|+
T Consensus 146 ---LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik 218 (406)
T KOG0295|consen 146 ---LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIK 218 (406)
T ss_pred ---hhccccceeEEEEecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeeccccccee
Confidence 7899999999999999999999999999999999873 233336779999999999999998 899999999999
Q ss_pred EEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCC-------
Q 001160 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG------- 553 (1134)
Q Consensus 481 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~------- 553 (1134)
.|++.+|-++++|.+|...|..++. ..||.++++++.|.++++|-+.+.++...+..|..+|.+++|.|..
T Consensus 219 ~We~~tg~cv~t~~~h~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~ 296 (406)
T KOG0295|consen 219 AWECDTGYCVKTFPGHSEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISE 296 (406)
T ss_pred EEecccceeEEeccCchHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhh
Confidence 9999999999999999999999987 4567999999999999999999999999999999999999997732
Q ss_pred --------CEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEE
Q 001160 554 --------TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 625 (1134)
Q Consensus 554 --------~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 625 (1134)
.++.+++ .|++|++||+.++.++.++.+|.. .|..++|+|.|+||+++.+|+++++||+.++++...
T Consensus 297 at~~~~~~~~l~s~S----rDktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~ 371 (406)
T KOG0295|consen 297 ATGSTNGGQVLGSGS----RDKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT 371 (406)
T ss_pred ccCCCCCccEEEeec----ccceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec
Confidence 3566665 488999999999999999999988 999999999999999999999999999999999999
Q ss_pred EeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 626 VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 626 ~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
+..|.+ -++++.|+.+..++++|+-|.++++|..
T Consensus 372 ~~ah~h--fvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 372 LEAHEH--FVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCcc--eeEEEecCCCCceEEeccccceeeeeec
Confidence 998766 6899999999999999999999999964
No 33
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.5e-35 Score=274.61 Aligned_cols=295 Identities=14% Similarity=0.235 Sum_probs=252.5
Q ss_pred cEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe--eEEEecCccCc
Q 001160 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKR 589 (1134)
Q Consensus 512 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~ 589 (1134)
-+|++++.|.+||+|...++.+..++....+.|..+.+.|+++.|++++ ...|++||++++. ++.+|.+|.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~k- 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTK- 84 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCC-
Confidence 5899999999999999999999999999999999999999999999986 5669999999865 6899999988
Q ss_pred ceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhh
Q 001160 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1134)
Q Consensus 590 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~ 669 (1134)
.|.++.|.-+|+++++||+||+++|||++...+.+.++. ..+|+++..+|+...|++|..+|.|++||+.+. ....
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~---~spVn~vvlhpnQteLis~dqsg~irvWDl~~~-~c~~ 160 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH---NSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN-SCTH 160 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC---CCCcceEEecCCcceEEeecCCCcEEEEEccCC-cccc
Confidence 899999999999999999999999999999666665553 358999999999999999999999999999766 1111
Q ss_pred hhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccce
Q 001160 670 MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKS 749 (1134)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 749 (1134)
.+
T Consensus 161 ~l------------------------------------------------------------------------------ 162 (311)
T KOG0315|consen 161 EL------------------------------------------------------------------------------ 162 (311)
T ss_pred cc------------------------------------------------------------------------------
Confidence 11
Q ss_pred eccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCcc
Q 001160 750 WRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLM 829 (1134)
Q Consensus 750 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 829 (1134)
.|+ ....|.++.+.|||..++++...|...+|++..... .+....
T Consensus 163 ----------------iPe--~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~-----------------~s~l~P 207 (311)
T KOG0315|consen 163 ----------------IPE--DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT-----------------ASELEP 207 (311)
T ss_pred ----------------CCC--CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc-----------------cccceE
Confidence 111 235678999999999999999999999999864211 111111
Q ss_pred ccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCC-eEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEE
Q 001160 830 TNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF-KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQ 907 (1134)
Q Consensus 830 ~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~ 907 (1134)
...++. | .+.+..+.+|||+++||+++ |.+++||+.++. +.-..+.+|...+..++||. |+.+|++|+.|+.++
T Consensus 208 ~~k~~a--h-~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~r 283 (311)
T KOG0315|consen 208 VHKFQA--H-NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTAR 283 (311)
T ss_pred hhheec--c-cceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCcee
Confidence 111333 7 88999999999999999999 999999999998 77778899999999999999 999999999999999
Q ss_pred EEEcCCceEEEEecCcccceEEEEEe
Q 001160 908 IYNVRVDEVKTKLKGHQNRITGLAFS 933 (1134)
Q Consensus 908 iwd~~~~~~~~~l~~h~~~i~~l~~s 933 (1134)
+|++..++.++...+|.....|++..
T Consensus 284 lW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 284 LWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ecccccCceeeecCCcccccEEEEee
Confidence 99999999999999999988888764
No 34
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=6e-35 Score=288.65 Aligned_cols=339 Identities=18% Similarity=0.279 Sum_probs=290.8
Q ss_pred EEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEE
Q 001160 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527 (1134)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd 527 (1134)
.|..|...|.+++.+|+.. +++||+.|....+|++.+|.....+.+|...|+++.|+.+ |.+|++|..+|.|++|+
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshd--gtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHD--GTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccC--ceEEEecCCCccEEEEE
Confidence 6789999999999999777 8999999999999999999999999999999999999765 49999999999999999
Q ss_pred ccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe
Q 001160 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (1134)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1134)
..++.....+......+.-+.|+|.+..|++++. ||.+.+|.+.++...+.+.+|.. ++++-.|.|+|++++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 9999999998888889999999999999999874 88899999999999999999887 899999999999999999
Q ss_pred CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCC
Q 001160 608 DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 687 (1134)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1134)
.||+|++||+.++.++..+....+ ....++.++..+..++.|..++.+.+-+..+++ .+....+
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK-Vv~~~n~-------------- 273 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGK-VVNCNNG-------------- 273 (399)
T ss_pred cCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccce-EEEecCC--------------
Confidence 999999999999999999876553 367889999999999999999999888766651 1100000
Q ss_pred CCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecC
Q 001160 688 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLP 767 (1134)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~ 767 (1134)
T Consensus 274 -------------------------------------------------------------------------------- 273 (399)
T KOG0296|consen 274 -------------------------------------------------------------------------------- 273 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEE
Q 001160 768 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 847 (1134)
Q Consensus 768 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~ 847 (1134)
.+..+. ....+....|.++.
T Consensus 274 ---------------~~~~l~---------------------------------------------~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 274 ---------------TVPELK---------------------------------------------PSQEELDESVESIP 293 (399)
T ss_pred ---------------CCcccc---------------------------------------------ccchhhhhhhhhcc
Confidence 000000 00000033455566
Q ss_pred eccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccc
Q 001160 848 LSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR 926 (1134)
Q Consensus 848 ~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~ 926 (1134)
++..-.+.|+|+ ||+|.|||+...+....+. |...|+.+.|-+ ..+|++++.||.|+.||.++|+++.++.||...
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~ 370 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG 370 (399)
T ss_pred cccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchh
Confidence 666777889999 9999999999877766665 888899999987 468889999999999999999999999999999
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEeCC
Q 001160 927 ITGLAFSPTLNALVSSGADAQLCMWSID 954 (1134)
Q Consensus 927 i~~l~~s~d~~~l~s~~~D~~i~iWd~~ 954 (1134)
|.+++++|+.++++|+|.|++.+|+++.
T Consensus 371 Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 371 ILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999999874
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.7e-35 Score=287.52 Aligned_cols=295 Identities=18% Similarity=0.280 Sum_probs=266.2
Q ss_pred ccceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEE
Q 001160 335 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1134)
Q Consensus 335 ~~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 413 (1134)
.+.++.+.+. |.+.|.|+++-|.++ ++++|+.|++|.|||+.+|+...+ +.||-..|..
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~ 198 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRG 198 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhheeee
Confidence 3556666777 899999999999987 789999999999999999998765 7899999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe
Q 001160 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1134)
Q Consensus 414 i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 493 (1134)
+++|+--.|+++++.|+.|+.||+...+.++ .+.||-..|.|++..|.-+ .|+||+.|.+++|||+++...+..+
T Consensus 199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l 273 (460)
T KOG0285|consen 199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVL 273 (460)
T ss_pred eeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEe
Confidence 9999999999999999999999999998887 6779999999999999988 8999999999999999999999999
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEe
Q 001160 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1134)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1134)
.||..+|..+.+.+.+ ..+++||.|++|++||+..++....+..|...+.+++.+|....+++++. ..|+-|+
T Consensus 274 ~GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~-----dnik~w~ 346 (460)
T KOG0285|consen 274 SGHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP-----DNIKQWK 346 (460)
T ss_pred cCCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC-----ccceecc
Confidence 9999999999998766 68999999999999999999999999999999999999999999999874 3499999
Q ss_pred CCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEe---CCC---CCCCcceEEEccCCCEE
Q 001160 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD---ADG---GLPASPRLRFNKEGSLL 647 (1134)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~---~~~~v~~~~~s~d~~~l 647 (1134)
+..|..+..+.+|.. .+++++.+.|+ ++++|+++|.+.+||.+++...+... ..+ ....|.+.+|...|..|
T Consensus 347 ~p~g~f~~nlsgh~~-iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rl 424 (460)
T KOG0285|consen 347 LPEGEFLQNLSGHNA-IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRL 424 (460)
T ss_pred CCccchhhccccccc-eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceE
Confidence 999999999999987 89999998876 88899999999999999987665542 111 23468899999999999
Q ss_pred EEEeCCCcEEEEECCC
Q 001160 648 AVTTSDNGIKILANSD 663 (1134)
Q Consensus 648 ~~~~~dg~i~iw~~~~ 663 (1134)
++|..|.+|++|.-..
T Consensus 425 it~eadKtIk~~keDe 440 (460)
T KOG0285|consen 425 ITGEADKTIKMYKEDE 440 (460)
T ss_pred EeccCCcceEEEeccc
Confidence 9999999999997543
No 36
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.2e-35 Score=297.19 Aligned_cols=284 Identities=19% Similarity=0.307 Sum_probs=250.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
-+-+|..|.|.|+|++ |++|+..|.+.+|+..+-. -..++..|..+|.++.||++|.+++
T Consensus 95 vkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~fn-------------------FEtilQaHDs~Vr~m~ws~~g~wmi 154 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSFN-------------------FETILQAHDSPVRTMKWSHNGTWMI 154 (464)
T ss_pred cccceeeEEEcCCCce-eEeecccccEEEecCceee-------------------HHHHhhhhcccceeEEEccCCCEEE
Confidence 4668999999999996 5689999999999964321 1124678999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEec-ccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1134)
+|+.+|.|++|+..-.... .+.+ |...|++++|+|+.. .++++++||+|+|||....+....+.||.-.|.++
T Consensus 155 SgD~gG~iKyWqpnmnnVk----~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMNNVK----IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred EcCCCceEEecccchhhhH----HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 9999999999998754322 3444 458999999999888 89999999999999999999888999999999999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEe
Q 001160 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1134)
.|+|.. .++++++.|..|++||.+++.++..+..|...|..+.|+|++++|++++. |..++++|+++.+.+.++
T Consensus 229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTY 302 (464)
T ss_pred ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHh
Confidence 999987 79999999999999999999999999999999999999999999999985 778999999999999999
Q ss_pred cCccCcceEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001160 584 SGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 584 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
++|.+ .+.++.|+|-. ..|.+|+.||.|..|.+...+++..+. +.+...|.+++|+|=|.+|++|+.|.++++|.-.
T Consensus 303 r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 303 RGHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred hcchh-hheeeccccccccceeeccCCCceEEEeccccccccCCC-cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99998 89999999966 566679999999999998767666664 3445689999999999999999999999999753
No 37
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.4e-33 Score=278.91 Aligned_cols=329 Identities=13% Similarity=0.185 Sum_probs=276.5
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+..|+++|.+++.+|+.+++|+|+.|....+|++.++.... ++.+|+..|+++.|+.||. +||||+-+|.|+||+
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFK 134 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEEE
Confidence 56799999999999999999999999999999999998554 7889999999999999999 999999999999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCC
Q 001160 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
..++.....+...-..+.-+.|+|.. ..|+.|+.||.+.+|.+.+......+.+|..++++=.|.|+|+.++++..
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-- 210 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-- 210 (399)
T ss_pred cccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec--
Confidence 99999988887667778889999965 89999999999999999998888899999999999999999999999974
Q ss_pred CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC---------CCCC
Q 001160 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG---------GLPA 634 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~ 634 (1134)
+++|++||+.++.++..+.........++.++..+..++.|+.++.+++-+..+++.+....... ....
T Consensus 211 --dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 211 --DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred --CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 88999999999999999987766678899999999999999999999999998888877665310 0111
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCC
Q 001160 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714 (1134)
Q Consensus 635 v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1134)
|-.+.++..-.+.|+|+-||+|.|||....
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-------------------------------------------------- 318 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAAS-------------------------------------------------- 318 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccc--------------------------------------------------
Confidence 222233333444555555555555554322
Q ss_pred CCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccC
Q 001160 715 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA 794 (1134)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 794 (1134)
T Consensus 319 -------------------------------------------------------------------------------- 318 (399)
T KOG0296|consen 319 -------------------------------------------------------------------------------- 318 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeE
Q 001160 795 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKV 873 (1134)
Q Consensus 795 ~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~ 873 (1134)
.. +... .| +..|..+.|-+ ..+|+++. +|.|+.||..+|++
T Consensus 319 ----------~~-----------------------R~~c---~h-e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 319 ----------TL-----------------------RHIC---EH-EDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQL 360 (399)
T ss_pred ----------hh-----------------------heec---cC-CCceEEEEEcC-cchheeeccCceEEeeeccccce
Confidence 00 0000 15 77788899988 56777776 99999999999999
Q ss_pred EEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcC
Q 001160 874 MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR 912 (1134)
Q Consensus 874 ~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~ 912 (1134)
+.++.+|...|.+++++| +.+++++++.|++.+|+++.
T Consensus 361 ~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 361 KFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 999999999999999999 89999999999999999864
No 38
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.2e-34 Score=290.29 Aligned_cols=281 Identities=18% Similarity=0.277 Sum_probs=254.3
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
....|++++|+.+|. +||+|+.||.++||+...+ .+.+ +..|+++|.++.|+.+|.||+
T Consensus 234 ~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~-l~~t-------------------l~~HkgPI~slKWnk~G~yil 292 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGT-LLATGSEDGEARIWNKDGN-LIST-------------------LGQHKGPIFSLKWNKKGTYIL 292 (524)
T ss_pred ccCCcceEEecCCCC-eEEEeecCcEEEEEecCch-hhhh-------------------hhccCCceEEEEEcCCCCEEE
Confidence 346899999999997 8999999999999997754 3332 677999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1134)
+++.|+++.+||..++.... .+.-|..+-..+.|-.+.+ +++++.|+.|+|+.+....++.++.+|.++|.++.
T Consensus 293 S~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 293 SGGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK 366 (524)
T ss_pred eccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence 99999999999999987655 5556888878899987775 89999999999999999999999999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCC---------EEEEEeeCCCCCCcEEEEeCC
Q 001160 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT---------RLFSCGTSKEGESHLVEWNES 575 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~---------~l~~~~~~~~~~~~i~~wd~~ 575 (1134)
|.|.+ .+|+++|.|+++++|..........+..|...|+.+.|+|.|. .+++++. +++|++||+.
T Consensus 367 ~n~tg--~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~ 440 (524)
T KOG0273|consen 367 WNPTG--SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVE 440 (524)
T ss_pred ECCCC--ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEcc
Confidence 98866 8999999999999999998888999999999999999999653 5677764 8899999999
Q ss_pred CCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCc
Q 001160 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1134)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~ 655 (1134)
.+.++.+|..|.. +|.+++|+|+|.++++|+.||.|.+|+..+++.++.+...+ .|..++|+.+|..|..+..|+.
T Consensus 441 ~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 441 SGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred CCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCCC
Confidence 9999999999988 99999999999999999999999999999999999987654 5899999999999999999999
Q ss_pred EEEEECC
Q 001160 656 IKILANS 662 (1134)
Q Consensus 656 i~iw~~~ 662 (1134)
+.+.|+.
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9998874
No 39
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.8e-30 Score=275.87 Aligned_cols=549 Identities=12% Similarity=0.128 Sum_probs=388.1
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecc-cCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001160 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~ 485 (1134)
-...|.++|||.+.+.||.+-.+|.|.||++..+=... ..+.++ ...|.+++|++.+ .|.+.+.+|.|.-||+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~~---RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEGG---RLFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceee--EEEecCCCCceeeEEEccCC---eEEeecCCceEEEEecc
Confidence 34579999999999999999999999999998854333 245554 4579999999666 48899999999999999
Q ss_pred CCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCcee--EecCCCCcEEEEEECCCCCEEEEEeeCC
Q 001160 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
+++..+.+....+.|++++.+|.. ..++.|+.||.+..++........ .+....+++.+++|+|++..++.|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-- 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-- 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc--
Confidence 999999999999999999999877 789999999977777766555443 34455689999999999999999985
Q ss_pred CCCCcEEEEeCCCCeeEEEec-------CccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcc
Q 001160 564 EGESHLVEWNESEGAIKRTYS-------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1134)
|+.|++||..++..+.... .....-|.++.|-.++ .+++|..-|+|.+||...+.+++....|.. .|.
T Consensus 175 --Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl 249 (691)
T KOG2048|consen 175 --DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVL 249 (691)
T ss_pred --CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhc--cee
Confidence 8899999999988776221 1122247778777554 789999999999999999999999887754 799
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCC
Q 001160 637 RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 716 (1134)
Q Consensus 637 ~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1134)
+++..+++.++++++.|+.|.-|...+++.. .+.
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~---------wv~------------------------------------- 283 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSE---------WVI------------------------------------- 283 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccc---------eee-------------------------------------
Confidence 9999999999999999999988887665220 000
Q ss_pred CCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCee
Q 001160 717 PPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVH 796 (1134)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 796 (1134)
. .+...|...|.+++..++ .+++++.|..+
T Consensus 284 ------------------------------------~------------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l 313 (691)
T KOG2048|consen 284 ------------------------------------N------------SRRDLHAHDVRSMAVIEN--ALISGGRDFTL 313 (691)
T ss_pred ------------------------------------e------------ccccCCcccceeeeeecc--eEEecceeeEE
Confidence 0 001226778889998887 68999999888
Q ss_pred EEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCe----
Q 001160 797 KLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK---- 872 (1134)
Q Consensus 797 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~---- 872 (1134)
.+-.....+. .... +...+ . .. .-+...|..++++.-.+..+.+|.+.+..
T Consensus 314 ~i~~s~~~~~-----------------~~h~-~~~~~----p-~~--~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~ 368 (691)
T KOG2048|consen 314 AICSSREFKN-----------------MDHR-QKNLF----P-AS--DRVSVAPENRLLVLWKAHGVDLWRLGSVILQGE 368 (691)
T ss_pred EEccccccCc-----------------hhhh-ccccc----c-cc--ceeecCccceEEEEeccccccceeccCcccccc
Confidence 8754321000 0000 00000 0 11 12334455556666568888999887652
Q ss_pred -----EEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEE-----ecCcccceEEEEEecCCCEEEEE
Q 001160 873 -----VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-----LKGHQNRITGLAFSPTLNALVSS 942 (1134)
Q Consensus 873 -----~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~-----l~~h~~~i~~l~~s~d~~~l~s~ 942 (1134)
+.+........|.|.+.|| +|++||.++- ..++||.+.....+.. .....-....+.|+-|++.++.+
T Consensus 369 ~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~ 446 (691)
T KOG2048|consen 369 YNYIHLLKLFTKEKENISCAAISP-DGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLV 446 (691)
T ss_pred cChhhheeeecCCccceeeeccCC-CCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEE
Confidence 1222223445799999999 9999998754 4788888765322222 22233356788999999888888
Q ss_pred c-CCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeCCCcceeccCCCCCCCCCe
Q 001160 943 G-ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPI 1020 (1134)
Q Consensus 943 ~-~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~v 1020 (1134)
+ .+..+.+.++++........+... .....++.++.||||+++|+ +..+.|.+|++++.....+.... ...|
T Consensus 447 s~~~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl--n~~v 520 (691)
T KOG2048|consen 447 SKNIFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL--NIDV 520 (691)
T ss_pred ecccceeEEEEecCcchhhhhccccc----cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc--Ccce
Confidence 7 677788888877553222111111 22367999999999999999 67899999999666655554332 5789
Q ss_pred EEEEEcc-CCCEEEEEecCCcEEEEeCCCcceeeecCCcc--cccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEE
Q 001160 1021 SSAIYSC-DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA--YIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVV 1097 (1134)
Q Consensus 1021 ~~v~~s~-dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW 1097 (1134)
++++|+| +-..|+.+..|+.|.-||++..+ +.++.... ..|....+-......+.|+|.+...++.= ..+-+++.
T Consensus 521 Ta~~~~~~~~~~lvvats~nQv~efdi~~~~-l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~-~a~w~~~i 598 (691)
T KOG2048|consen 521 TAAAFSPFVRNRLVVATSNNQVFEFDIEARN-LTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVY-DAHWSCLI 598 (691)
T ss_pred eeeeccccccCcEEEEecCCeEEEEecchhh-hhhhhhccccccccChhhcCCCCceEEeCCCCccEEEEE-cCcEEEEE
Confidence 9999995 55678889999999999995433 32222110 11222222233455778887665555543 33455665
Q ss_pred ecC
Q 001160 1098 EPS 1100 (1134)
Q Consensus 1098 ~~~ 1100 (1134)
|.+
T Consensus 599 d~~ 601 (691)
T KOG2048|consen 599 DFS 601 (691)
T ss_pred ecC
Confidence 543
No 40
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.9e-32 Score=293.55 Aligned_cols=476 Identities=16% Similarity=0.220 Sum_probs=329.8
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+...+..|..++|+|...+++++-..|.|++||.+-+..+. .|..|.++|..++|+|++. ++++|++|..|++|+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 34466789999999999999999999999999999988777 7889999999999999999 999999999999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCC
Q 001160 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
..+.+++.++.||-+.|..+.|++.. .+++++|+|.+|++|+..+.+++..+.+|.+.|.|..|+|....+++++.
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 99999999999999999999999877 79999999999999999999999999999999999999999999999986
Q ss_pred CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccC
Q 001160 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 643 (1134)
|.+|++||+..-+....-.+.-........ ++.=+.|+.|-. ....+++| ...|+-++|+|.
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~e~~~~~~~----~~~dLfg~~DaV----------VK~VLEGH--DRGVNwaAfhpT 217 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSLEDQMRGQQ----GNSDLFGQTDAV----------VKHVLEGH--DRGVNWAAFHPT 217 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCchhhhhccc----cchhhcCCcCee----------eeeeeccc--ccccceEEecCC
Confidence 778999998653322221211010111000 000011222222 23345555 458999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccC
Q 001160 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (1134)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1134)
-.++++|++|..|++|.++..
T Consensus 218 lpliVSG~DDRqVKlWrmnet----------------------------------------------------------- 238 (1202)
T KOG0292|consen 218 LPLIVSGADDRQVKLWRMNET----------------------------------------------------------- 238 (1202)
T ss_pred cceEEecCCcceeeEEEeccc-----------------------------------------------------------
Confidence 999999999999999987543
Q ss_pred ccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeeccc
Q 001160 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQR 803 (1134)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~ 803 (1134)
+.|.+++. .+|.+.|.++.|.|....+++.+.|++++|||+..
T Consensus 239 ------------------------KaWEvDtc-------------rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 239 ------------------------KAWEVDTC-------------RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred ------------------------cceeehhh-------------hcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence 22333321 34889999999999999999999999999999753
Q ss_pred ccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCc
Q 001160 804 TERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPA 883 (1134)
Q Consensus 804 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~ 883 (1134)
.. .+...-.. .+..+.++.+|..+++|.|-|+.+.||.++.-.+
T Consensus 282 Rt----------------------~v~tfrre----ndRFW~laahP~lNLfAAgHDsGm~VFkleRErp---------- 325 (1202)
T KOG0292|consen 282 RT----------------------SVQTFRRE----NDRFWILAAHPELNLFAAGHDSGMIVFKLERERP---------- 325 (1202)
T ss_pred cc----------------------ceeeeecc----CCeEEEEEecCCcceeeeecCCceEEEEEcccCc----------
Confidence 21 11111222 6788999999999999999998888888764322
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceE--EEEecCc---ccceEEEEEecCCCE-EEEEcCC-CcEEEEeCCCc
Q 001160 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKLKGH---QNRITGLAFSPTLNA-LVSSGAD-AQLCMWSIDKW 956 (1134)
Q Consensus 884 i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~--~~~l~~h---~~~i~~l~~s~d~~~-l~s~~~D-~~i~iWd~~~~ 956 (1134)
+.+.+ ++ .|... .|..|+-+|+.+.+- +..++.- ..++.++.++|.... |++...| +.--++.+...
T Consensus 326 --a~~v~--~n-~LfYv-kd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~ 399 (1202)
T KOG0292|consen 326 --AYAVN--GN-GLFYV-KDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKD 399 (1202)
T ss_pred --eEEEc--CC-EEEEE-ccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCc
Confidence 22333 23 33333 388999999988543 3445433 257889999997554 4443333 34444444332
Q ss_pred ccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE-ECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEE
Q 001160 957 EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAG 1035 (1134)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~ 1035 (1134)
....... ..... ..-....|-..+++.+.. ++.++.+=+++.+..+.+.. ...+..|-+..+|.+|+.
T Consensus 400 ~~~~~~~---~~~~k---~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~----~~~~~~IF~ag~g~lll~- 468 (1202)
T KOG0292|consen 400 SDGVSDG---KDVKK---GTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLL----PESTDDIFYAGTGNLLLR- 468 (1202)
T ss_pred ccccCCc---hhhhc---CCCCceEEEEecceEEEEecCcceEEecccchhhhcccC----cccccceeeccCccEEEE-
Confidence 1100000 00000 111222333333333332 34555555553333333322 123445555556665544
Q ss_pred ecCCcEEEEeCCCcceeeecC
Q 001160 1036 FCDGAIGVFDAETLRFRCRIG 1056 (1134)
Q Consensus 1036 ~~dg~I~vwd~~~~~~~~~~~ 1056 (1134)
....|.+||+..++.+..+.
T Consensus 469 -~~~~v~lfdvQq~~~~~si~ 488 (1202)
T KOG0292|consen 469 -SPDSVTLFDVQQKKKVGSIK 488 (1202)
T ss_pred -cCCeEEEEEeecceEEEEEe
Confidence 24467777777776666655
No 41
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=261.79 Aligned_cols=292 Identities=20% Similarity=0.312 Sum_probs=238.3
Q ss_pred EEEEec-CCCCeeEEEEecC-CCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEE
Q 001160 339 VVRTLN-QGSNVMSMDFHPQ-QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1134)
Q Consensus 339 ~~~~l~-h~~~V~~v~~spd-g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~ 416 (1134)
.++.+. |.+.|+.++|+|- |. +||+|+.|..|+||+...+....- ...+-.+|+..|.++||
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAW 69 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeee
Confidence 345555 8899999999999 76 899999999999999885332111 01113479999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC---eeeEEe
Q 001160 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQYTF 493 (1134)
Q Consensus 417 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~---~~~~~~ 493 (1134)
+|.|++||+|+.|.++.||.-..+ .......++||...|.|++|+++|. +||||+.|++|-||.+..+ +++..+
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~-efecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDG-EFECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCC-ceeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 999999999999999999997754 3455668999999999999999999 9999999999999998744 467789
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccC---CCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEE
Q 001160 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY---LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1134)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1134)
+.|...|..+.|+|.. .+|+++|.|++|++|+-.. -.+...+.+|...|.+++|++.|..|++++. |++++
T Consensus 147 ~~HtqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~ 220 (312)
T KOG0645|consen 147 QEHTQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVS 220 (312)
T ss_pred ccccccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceE
Confidence 9999999999999988 7999999999999998763 2346788899999999999999999999974 88999
Q ss_pred EEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEE-----eCCCCCCCcceEEEccC-C
Q 001160 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV-----DADGGLPASPRLRFNKE-G 644 (1134)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~v~~~~~s~d-~ 644 (1134)
||... ..+...+...+..+.|. ...|++++.|+.|++|.-...-.-..+ ..+.|...|++++|.|. .
T Consensus 221 Iw~~~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~ 293 (312)
T KOG0645|consen 221 IWRLY-----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVS 293 (312)
T ss_pred eeeec-----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCC
Confidence 99865 23444444478889998 458999999999999987643111111 12233458999999994 7
Q ss_pred CEEEEEeCCCcEEEEECC
Q 001160 645 SLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~ 662 (1134)
.+|+++++||.+++|.+.
T Consensus 294 ~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 294 NRLASGGDDGIVNFWELE 311 (312)
T ss_pred CceeecCCCceEEEEEec
Confidence 799999999999999864
No 42
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.2e-33 Score=270.39 Aligned_cols=285 Identities=18% Similarity=0.245 Sum_probs=249.0
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEE
Q 001160 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1134)
Q Consensus 344 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~l 423 (1134)
.|++.|+.+.|+|+|. ++|+|+.|..|.+|++.....-. ..+++|++.|..+.|.+|++.|
T Consensus 45 gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d~s~i 105 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRDGSHI 105 (338)
T ss_pred CCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccCCCEE
Confidence 3899999999999997 89999999999999976433211 1367999999999999999999
Q ss_pred EEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEE
Q 001160 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1134)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1134)
++++.|.+++.||+++|+..+ .+++|..-|+++.-+.-|.. ++.+|+.|+++++||+++...++++. ....++++
T Consensus 106 ~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv 180 (338)
T KOG0265|consen 106 LSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAV 180 (338)
T ss_pred EEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cceeEEEE
Confidence 999999999999999998777 67789999999996666665 78899999999999999998888875 56678999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC----Cee
Q 001160 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----GAI 579 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----~~~ 579 (1134)
.|.-. +..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++.+-+. |.++++||.+. .++
T Consensus 181 ~f~d~--s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p~~R~ 254 (338)
T KOG0265|consen 181 GFKDT--SDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAPSQRC 254 (338)
T ss_pred Eeccc--ccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCCCCce
Confidence 98554 478999999999999999999999999999999999999999999999876 78899999974 345
Q ss_pred EEEecCccCc---ceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcE
Q 001160 580 KRTYSGFRKR---SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1134)
Q Consensus 580 ~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i 656 (1134)
+..+.++... ....++|+|++..+.+|+.|+.+++||......+..+++|.+ .|++++|+|...+|.+++.|.+|
T Consensus 255 v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 255 VKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred EEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEeccCcee
Confidence 7777776431 345688999999999999999999999999899998887754 79999999999999999999998
Q ss_pred EEEE
Q 001160 657 KILA 660 (1134)
Q Consensus 657 ~iw~ 660 (1134)
.+=.
T Consensus 333 ~lge 336 (338)
T KOG0265|consen 333 YLGE 336 (338)
T ss_pred Eeec
Confidence 8743
No 43
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.5e-31 Score=274.57 Aligned_cols=486 Identities=15% Similarity=0.203 Sum_probs=356.0
Q ss_pred hhhhhhcccCCcceeEeeCCCCCCccc---------------cCccccceEEEEec-CCCCeeEEEEecC--CCeEEEE-
Q 001160 304 DHLMKRIRTGQSDEVSFAGVAHTPNVY---------------SQDDLTKTVVRTLN-QGSNVMSMDFHPQ--QQTILLV- 364 (1134)
Q Consensus 304 ~~~~~~~~~~~~~~v~~s~~g~~~~~~---------------~~~~~~~~~~~~l~-h~~~V~~v~~spd--g~~llas- 364 (1134)
.+--...+...+.|++..||--.++.. .||..+..-+..+. -...|+|++||+- |..+++.
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD 175 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVD 175 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEec
Confidence 334445556688899998865544432 24444444455555 5678999999984 3333332
Q ss_pred EeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccc
Q 001160 365 GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR 444 (1134)
Q Consensus 365 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~ 444 (1134)
-+.+.-+.+||.+.+..... .+.....|..+.|+|.+.-|+.....+.+.+|+..++...+
T Consensus 176 ~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k 236 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKKAKLGP-------------------VKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVK 236 (626)
T ss_pred CCCccccchhhchhhhccCc-------------------ceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEE
Confidence 13456789999998776543 33456778999999977777777788899999999988877
Q ss_pred eeeEEeccc-CCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeE
Q 001160 445 QHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523 (1134)
Q Consensus 445 ~~~~~~~h~-~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i 523 (1134)
....++.+. .-|.|++|.++|+ ++||..+|.|.||+..+.+..+....|.+.|.+++...+ ..|++|+.|+.|
T Consensus 237 ~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~---GtllSGgKDRki 310 (626)
T KOG2106|consen 237 RQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRD---GTLLSGGKDRKI 310 (626)
T ss_pred EeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecC---ccEeecCccceE
Confidence 666666544 4699999999998 899999999999999888877777799999999998665 367779999999
Q ss_pred EEEEccCCCcee--EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCC
Q 001160 524 KAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN 601 (1134)
Q Consensus 524 ~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 601 (1134)
..|| .+-+... .++...+.|..++-...+ ++.+.. .+.|..=.++++-. ....+|.+ ....++.+|+.+
T Consensus 311 ~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTt----rN~iL~Gt~~~~f~-~~v~gh~d-elwgla~hps~~ 381 (626)
T KOG2106|consen 311 ILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTT----RNFILQGTLENGFT-LTVQGHGD-ELWGLATHPSKN 381 (626)
T ss_pred Eecc-ccccccccccCchhcCCeeEEecCCCc--EEEeec----cceEEEeeecCCce-EEEEeccc-ceeeEEcCCChh
Confidence 9999 4333333 344455677776643333 555543 33343333443332 33456666 788899999999
Q ss_pred EEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCC
Q 001160 602 RFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRC 681 (1134)
Q Consensus 602 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 681 (1134)
.+++++.|+.+++|+ ..++..+.... .++.++.|+|.| .+|.|+..|...+.|.++. .++.. |.
T Consensus 382 q~~T~gqdk~v~lW~--~~k~~wt~~~~---d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~~---~~------ 445 (626)
T KOG2106|consen 382 QLLTCGQDKHVRLWN--DHKLEWTKIIE---DPAECADFHPSG-VVAVGTATGRWFVLDTETQ-DLVTI---HT------ 445 (626)
T ss_pred heeeccCcceEEEcc--CCceeEEEEec---CceeEeeccCcc-eEEEeeccceEEEEecccc-eeEEE---Ee------
Confidence 999999999999999 44444443322 367899999999 9999999999999998764 22111 10
Q ss_pred CCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccce
Q 001160 682 PSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQI 761 (1134)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~ 761 (1134)
T Consensus 446 -------------------------------------------------------------------------------- 445 (626)
T KOG2106|consen 446 -------------------------------------------------------------------------------- 445 (626)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCC
Q 001160 762 KALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEE 841 (1134)
Q Consensus 762 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~ 841 (1134)
...++..+.|+|+|.+|+.++.|+.|.+|.+..+ |..+...-. .| ..
T Consensus 446 ---------d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~---------------------g~~y~r~~k--~~-gs 492 (626)
T KOG2106|consen 446 ---------DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN---------------------GRKYSRVGK--CS-GS 492 (626)
T ss_pred ---------cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC---------------------CcEEEEeee--ec-Cc
Confidence 2356789999999999999999999999987532 222221111 14 68
Q ss_pred ceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEE--------------e----cCCCCceEEEEEcCCCCcEEEEEeC
Q 001160 842 SAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM--------------F----MSPPPAATFLAFHPQDNNIIAIGME 902 (1134)
Q Consensus 842 ~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~--------------~----~~~~~~i~~l~~s~~~~~~lasg~~ 902 (1134)
+|+.+.||+|++++.+-+ |-.|..|.....+.+.. | ..+...|..++-+. +.+++|+|.+
T Consensus 493 ~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~-~~~~lA~gdd 571 (626)
T KOG2106|consen 493 PITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSH-CEKLLASGDD 571 (626)
T ss_pred eeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhh-hhhhhhcccc
Confidence 899999999999999998 88999995433221111 1 12445677788888 8899999999
Q ss_pred CCcEEEEEcCCce---EEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeC
Q 001160 903 DSSVQIYNVRVDE---VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953 (1134)
Q Consensus 903 dg~i~iwd~~~~~---~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~ 953 (1134)
.|.|++|...--+ ....+.+|++-|++++|.-+..+|++.+.|..|..|++
T Consensus 572 ~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 572 FGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred CceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 9999999876433 34567899999999999999999999999999999986
No 44
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-33 Score=276.35 Aligned_cols=305 Identities=16% Similarity=0.247 Sum_probs=266.4
Q ss_pred eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCC
Q 001160 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1134)
Q Consensus 488 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1134)
...+.+.+|..+|+.+.++|.. ..+++++.|++|++||..+++....+.+|...+..++|+..|+++++++. |-
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~--~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs----Dl 172 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSE--ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSS----DL 172 (406)
T ss_pred CchhhhhccccceeeeeeccCc--eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCC----cc
Confidence 4456777899999999999976 78899999999999999999999999999999999999999999999985 55
Q ss_pred cEEEEeCCC-CeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCE
Q 001160 568 HLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (1134)
Q Consensus 568 ~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 646 (1134)
.+.+||..+ .++++.+.+|.. .|.+++|-|.|.++++++.|.+|+.|++.++.++.++.+|.. .|..++.+.||.+
T Consensus 173 ~~~LWd~~~~~~c~ks~~gh~h-~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e--wvr~v~v~~DGti 249 (406)
T KOG0295|consen 173 SAKLWDFDTFFRCIKSLIGHEH-GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE--WVRMVRVNQDGTI 249 (406)
T ss_pred chhheeHHHHHHHHHHhcCccc-ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH--hEEEEEecCCeeE
Confidence 699999987 667788888877 899999999999999999999999999999999999998855 8899999999999
Q ss_pred EEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccC
Q 001160 647 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 726 (1134)
Q Consensus 647 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1134)
+|+++.|.++++|-+.++ +....++.
T Consensus 250 ~As~s~dqtl~vW~~~t~-~~k~~lR~----------------------------------------------------- 275 (406)
T KOG0295|consen 250 IASCSNDQTLRVWVVATK-QCKAELRE----------------------------------------------------- 275 (406)
T ss_pred EEecCCCceEEEEEeccc-hhhhhhhc-----------------------------------------------------
Confidence 999999999999999888 55555544
Q ss_pred CCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccC
Q 001160 727 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER 806 (1134)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~ 806 (1134)
|+..|.+++|.|...+ ....+
T Consensus 276 --------------------------------------------hEh~vEci~wap~~~~--~~i~~------------- 296 (406)
T KOG0295|consen 276 --------------------------------------------HEHPVECIAWAPESSY--PSISE------------- 296 (406)
T ss_pred --------------------------------------------cccceEEEEecccccC--cchhh-------------
Confidence 4455667777665431 00000
Q ss_pred CCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceE
Q 001160 807 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAAT 885 (1134)
Q Consensus 807 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~ 885 (1134)
.. . ... .+.++.+++ |++|++||+.++.++.++.+|.+.|.
T Consensus 297 ---------------------------at--~-~~~--------~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr 338 (406)
T KOG0295|consen 297 ---------------------------AT--G-STN--------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR 338 (406)
T ss_pred ---------------------------cc--C-CCC--------CccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence 00 0 111 567899999 99999999999999999999999999
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeC
Q 001160 886 FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953 (1134)
Q Consensus 886 ~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~ 953 (1134)
.++|+| +|+||++..+|+++++||+.++++...+..|..-|+++.|..+..+++||+-|.++++|..
T Consensus 339 ~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 339 GVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999 9999999999999999999999999999999999999999999999999999999999964
No 45
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.2e-33 Score=267.86 Aligned_cols=252 Identities=17% Similarity=0.288 Sum_probs=219.6
Q ss_pred cccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEE
Q 001160 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 402 ~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~i 481 (1134)
..+.+|++.|..+.|+|+|.+||+|+.|..|.+|++..... ....+++|.+.|..+.|.+|+. .|++++.|++|+.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--N~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE--NFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRG 116 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc--ceeeeccccceeEeeeeccCCC--EEEEecCCceEEE
Confidence 34789999999999999999999999999999999765432 3336779999999999999999 8999999999999
Q ss_pred EECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEee
Q 001160 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1134)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1134)
||+++|++++.+++|...|+++.....+ -.++.+++.|+++++||++..+....+. ...+++++.|...+..+.+++-
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg-~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPSRRG-PQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred EecccceeeehhccccceeeecCccccC-CeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc
Confidence 9999999999999999999999844332 2678889999999999999877766553 3457899999999999999987
Q ss_pred CCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCC----CeeEEEEeCCCCCC--Cc
Q 001160 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN----MNMLTTVDADGGLP--AS 635 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~--~v 635 (1134)
|+.|++||++.+.....+.||.+ +|+.+..+++|.++.+-+.|.++++||++. .+++..+.++.+.- ..
T Consensus 195 ----dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 195 ----DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred ----cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 56699999999999999999999 999999999999999999999999999874 34577777665433 34
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 636 ~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
..++|+|++..+.+|+.|..+++||....
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred ceeeccCCCCccccccccceEEEeecccc
Confidence 56789999999999999999999997654
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.1e-33 Score=276.00 Aligned_cols=246 Identities=16% Similarity=0.284 Sum_probs=229.1
Q ss_pred ccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEE
Q 001160 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iw 482 (1134)
++.+|.+.|.|+++-|...++++|+.|++|+|||+.+|+... ++.||...|..+++|+-.. |+++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 588999999999999999999999999999999999997554 8889999999999999888 89999999999999
Q ss_pred ECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeC
Q 001160 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1134)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1134)
|++..+.++.+.||-..|.+++.+|.- +.|++|+.|.++|+||+++...+..+.+|...|..+.+.|-...+++++.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~- 297 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH- 297 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence 999999999999999999999999987 79999999999999999999999999999999999999999999999985
Q ss_pred CCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc
Q 001160 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1134)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1134)
|++|++||++.|+...++..|.. .+.+++.+|....+++++.| .|+-|++..+..+..+.+|. ..|++++...
T Consensus 298 ---D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~--~iintl~~ns 370 (460)
T KOG0285|consen 298 ---DSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHN--AIINTLSVNS 370 (460)
T ss_pred ---CceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhhcccccc--ceeeeeeecc
Confidence 88899999999999999998887 99999999999999998877 49999999999998877664 4688898888
Q ss_pred CCCEEEEEeCCCcEEEEECCCc
Q 001160 643 EGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 643 d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
|| ++++|+++|.+.+||.+++
T Consensus 371 D~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 371 DG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred Cc-eEEEcCCceEEEEEecCcC
Confidence 77 7788999999999999988
No 47
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.2e-32 Score=310.76 Aligned_cols=286 Identities=20% Similarity=0.358 Sum_probs=251.5
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcc--ccccccceeeccccccccccccccccCCcCeEEEEEcCCCCE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE--RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
+...|.|+.|||+|+ .+++++.|+.+++|+..+++ .+.. +.+|...|.+++|+|||++
T Consensus 158 ~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeEECCCCcE
Confidence 478999999999998 58899999999999997666 3221 5789999999999999999
Q ss_pred EEEEeCCCeEEEEEc-CCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeE
Q 001160 423 LGVAFSKHIVHLYTY-NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1134)
Q Consensus 423 las~~~dg~i~iwd~-~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 501 (1134)
+++++.|++|+|||+ ..+..++ ++.+|...|++++|+|+|+ ++++|+.|++|+|||+++++++..+.+|.+.|.
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999999999 3334444 8889999999999999997 899999999999999999999999999999999
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEccCCC--ceeEecCCCC--cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC
Q 001160 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1134)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1134)
+++|++++ .+|++++.|+.|++||+.++. ....+..+.. .++++.|+|+++++++++. ++.+++||+..+
T Consensus 293 ~~~f~~d~--~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAFSPDG--NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSG 366 (456)
T ss_pred EEEECCCC--CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCC
Confidence 99997754 899999999999999999988 3445544444 5999999999999999985 778999999999
Q ss_pred eeEEEecCccCc--ceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEe--CC
Q 001160 578 AIKRTYSGFRKR--SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT--SD 653 (1134)
Q Consensus 578 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--~d 653 (1134)
..+..+.+|... .+.+..+++.+.++++|+.|+.|++||..++..+..+.+|. ...+..+++++...++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999999874 34455567889999999999999999999999999998885 45789999999999999998 68
Q ss_pred CcEEEEECC
Q 001160 654 NGIKILANS 662 (1134)
Q Consensus 654 g~i~iw~~~ 662 (1134)
+.+++|...
T Consensus 446 ~~~~~w~~~ 454 (456)
T KOG0266|consen 446 GLIRLWKYD 454 (456)
T ss_pred ceEEEecCC
Confidence 999999753
No 48
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.1e-33 Score=303.27 Aligned_cols=247 Identities=17% Similarity=0.345 Sum_probs=228.0
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC--------c--------------------cceeeEEecccCCeeE
Q 001160 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG--------E--------------------LRQHLEIDAHVGGVND 458 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~--------~--------------------~~~~~~~~~h~~~v~~ 458 (1134)
....++|..||+|++.||.|..|..|++|.+...+ . -....++.||.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 34469999999999999999999999999987421 0 0123457899999999
Q ss_pred EEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec
Q 001160 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538 (1134)
Q Consensus 459 l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 538 (1134)
+.|+|+.+ +|++++.|++|++|.+.+..++-.++||..+|+.+.|+|.+ -+++|+|.|++.++|..+...+...+.
T Consensus 457 ~sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G--yYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 457 CSFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG--YYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc--eEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999 89999999999999999999999999999999999998764 999999999999999999999999999
Q ss_pred CCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 001160 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1134)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 618 (1134)
+|-..|.|+.|+|+..|+++++. |.++++||..+|..++.|.||.. +|.+++|+|+|.+|++|++||.|.+||+.
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred ccccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 99999999999999999999975 88899999999999999999988 99999999999999999999999999999
Q ss_pred CCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 619 NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 619 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+++++..+..| ...|.++.|+.||..||+|+.|++|++||+...
T Consensus 608 ~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 608 NGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999988 558999999999999999999999999998654
No 49
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.6e-29 Score=266.63 Aligned_cols=503 Identities=15% Similarity=0.179 Sum_probs=363.0
Q ss_pred ccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee-eEEecCC-CCCeEEEEeeccCCccEEEEEecCCeEEEEEcc
Q 001160 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529 (1134)
Q Consensus 452 h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~-~~~~~~h-~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~ 529 (1134)
-..+|.++||+.+.+ .||.+-.||.|.||++..+=. ...+.++ ...|.+++|.+ +..|++.+.+|.|.-||+.
T Consensus 24 ~Ps~I~slA~s~kS~--~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e---~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSN--QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE---GGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCC--ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc---CCeEEeecCCceEEEEecc
Confidence 356799999999998 699999999999999987543 3455554 46899999983 3799999999999999999
Q ss_pred CCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCc-cCcceEEEEEeCCCCEEEEEeC
Q 001160 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF-RKRSLGVVQFDTTRNRFLAAGD 608 (1134)
Q Consensus 530 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 608 (1134)
+.+.+..+...++.|.+++.+|.+..++.++. +|.+..++...++......-. ..+.+.+++|+|++..+++|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd----dGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~ 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPENTILAIGCD----DGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCccceEEeecC----CceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc
Confidence 99999999999999999999999999998874 677888888777765443222 2348999999999999999999
Q ss_pred CCeEEEEECCCCeeEEEEeC-----CC-CCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCC
Q 001160 609 EFQIKFWDMDNMNMLTTVDA-----DG-GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCP 682 (1134)
Q Consensus 609 dg~i~iwd~~~~~~~~~~~~-----~~-~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 682 (1134)
||.|++||+.++..+..... .. ...-|+++.|-.++ .|++|.+.|+|.+||...+ .+.+....
T Consensus 175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g-TLiqS~~~--------- 243 (691)
T KOG2048|consen 175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG-TLIQSHSC--------- 243 (691)
T ss_pred CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc-chhhhhhh---------
Confidence 99999999999887763321 11 22346677777655 6889999999999999888 55544432
Q ss_pred CCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCcccee
Q 001160 683 SEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK 762 (1134)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 762 (1134)
T Consensus 244 -------------------------------------------------------------------------------- 243 (691)
T KOG2048|consen 244 -------------------------------------------------------------------------------- 243 (691)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCc
Q 001160 763 ALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEES 842 (1134)
Q Consensus 763 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~ 842 (1134)
|...|.+++.++++.++++++-|+.+..|...+.+. -|-.. ... ..| ...
T Consensus 244 --------h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~-------------~wv~~------~~r--~~h-~hd 293 (691)
T KOG2048|consen 244 --------HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS-------------EWVIN------SRR--DLH-AHD 293 (691)
T ss_pred --------hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc-------------ceeee------ccc--cCC-ccc
Confidence 556788999999999999999999998887654221 02111 111 226 889
Q ss_pred eEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEE-EEEcCCCCcEEEEEeCCCcEEEEEcCCce-----
Q 001160 843 AACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATF-LAFHPQDNNIIAIGMEDSSVQIYNVRVDE----- 915 (1134)
Q Consensus 843 i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~-l~~s~~~~~~lasg~~dg~i~iwd~~~~~----- 915 (1134)
+.+++..++ .+.+|+ |.++.+-.....+..........+-.+ +...| .++|..--.+..+.+|.+-+.-
T Consensus 294 vrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlGS~~~~g~~ 369 (691)
T KOG2048|consen 294 VRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLGSVILQGEY 369 (691)
T ss_pred ceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCc--cceEEEEeccccccceeccCccccccc
Confidence 999999888 777777 888877665542221111100111112 22233 3445545557778888776541
Q ss_pred ----EEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE
Q 001160 916 ----VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1134)
Q Consensus 916 ----~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1134)
+.+-...-...|.+-+.||||++++.+. -...+||.++....++...+....... ...+.+.|+-|+..++.
T Consensus 370 ~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~---~~a~~i~ftid~~k~~~ 445 (691)
T KOG2048|consen 370 NYIHLLKLFTKEKENISCAAISPDGNLIAIST-VSRTKIYRLQPDPNVKVINVDDVPLAL---LDASAISFTIDKNKLFL 445 (691)
T ss_pred ChhhheeeecCCccceeeeccCCCCCEEEEee-ccceEEEEeccCcceeEEEeccchhhh---ccceeeEEEecCceEEE
Confidence 1222222335689999999999988765 345788888764433333322222111 35788999999988777
Q ss_pred E--ECCeEEEEeC---CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCccccccccc
Q 001160 992 V--HESQISVYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV 1066 (1134)
Q Consensus 992 ~--~d~~v~vwd~---~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~ 1066 (1134)
. ....+.++++ +.+.+..+... +-...|..+..|+||+|+|+.+.+|.|.+|++.+++.......-
T Consensus 446 ~s~~~~~le~~el~~ps~kel~~~~~~-~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl-------- 516 (691)
T KOG2048|consen 446 VSKNIFSLEEFELETPSFKELKSIQSQ-AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL-------- 516 (691)
T ss_pred EecccceeEEEEecCcchhhhhccccc-cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc--------
Confidence 4 4567777777 44444444333 33678999999999999999999999999999998766544211
Q ss_pred CCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1067 SNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1067 ~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
...+++++++|.+-+.|+.+..|+.+.-+|+...+
T Consensus 517 --n~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 517 --NIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARN 551 (691)
T ss_pred --CcceeeeeccccccCcEEEEecCCeEEEEecchhh
Confidence 15667888998787899999999999999994433
No 50
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-32 Score=273.92 Aligned_cols=295 Identities=17% Similarity=0.283 Sum_probs=238.2
Q ss_pred cccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEE
Q 001160 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 402 ~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~i 481 (1134)
+++..|.+.|.-+.||++|+|||+++.|.+..+|++.....+....++.+|..+|..+.||||.+ ++++|+.|..+.+
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~l 295 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSL 295 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheee
Confidence 35788999999999999999999999999999999987777777789999999999999999999 8999999999999
Q ss_pred EECCCCeeeEEec-CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEe
Q 001160 482 WDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1134)
Q Consensus 482 wd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1134)
||+.+|...+.+. +|...+.+++|.|++ ..+++|+.|+++..||++
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg--~~~V~Gs~dr~i~~wdlD------------------------------- 342 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDG--FRFVTGSPDRTIIMWDLD------------------------------- 342 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCC--ceeEecCCCCcEEEecCC-------------------------------
Confidence 9999999887664 234566666666543 566666666666666553
Q ss_pred eCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEE
Q 001160 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (1134)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 640 (1134)
|..+...++-....|.++++++||+++++.+.|..|++++.++......+..+ .+|+++..
T Consensus 343 ----------------gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~---~~its~~i 403 (519)
T KOG0293|consen 343 ----------------GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE---QPITSFSI 403 (519)
T ss_pred ----------------cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc---CceeEEEE
Confidence 22222333333336888999999999999999999999999877666555433 37899999
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCc
Q 001160 641 NKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720 (1134)
Q Consensus 641 s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1134)
|.||+++++.-.+..+++||++.. .+++.+.||...
T Consensus 404 S~d~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~------------------------------------------- 439 (519)
T KOG0293|consen 404 SKDGKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQG------------------------------------------- 439 (519)
T ss_pred cCCCcEEEEEcccCeeEEeecchh-hHHHHhhccccc-------------------------------------------
Confidence 999999999999999999999966 667666665321
Q ss_pred ccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEee
Q 001160 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWK 800 (1134)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~ 800 (1134)
++++-.+
T Consensus 440 ----------------------------------------------------------------~fiIrSC--------- 446 (519)
T KOG0293|consen 440 ----------------------------------------------------------------HFIIRSC--------- 446 (519)
T ss_pred ----------------------------------------------------------------ceEEEec---------
Confidence 1111000
Q ss_pred cccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecC
Q 001160 801 WQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS 879 (1134)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~ 879 (1134)
+.+ .|..++|+|+ |++|+||+..+++++..+.|
T Consensus 447 --------------------------------Fgg--------------~~~~fiaSGSED~kvyIWhr~sgkll~~LsG 480 (519)
T KOG0293|consen 447 --------------------------------FGG--------------GNDKFIASGSEDSKVYIWHRISGKLLAVLSG 480 (519)
T ss_pred --------------------------------cCC--------------CCcceEEecCCCceEEEEEccCCceeEeecC
Confidence 111 2567999999 99999999999999999999
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC
Q 001160 880 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1134)
Q Consensus 880 ~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~ 913 (1134)
|...|+|++|+|.+..++|+|++||+|+||....
T Consensus 481 Hs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 481 HSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999999999999999999999999999998653
No 51
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.5e-32 Score=251.59 Aligned_cols=288 Identities=14% Similarity=0.218 Sum_probs=247.3
Q ss_pred ceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEE
Q 001160 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1134)
Q Consensus 337 ~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~ 415 (1134)
.+..+.+. +.++|.++.|+-||+ +..+++.|.+|++|+...|.++.+ +.+|...|..++
T Consensus 7 tkr~~~l~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~~ 66 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDAA 66 (307)
T ss_pred chhceeecccccceEEEEEccCCC-EEEEcCCCceEEeecccccceeee-------------------ecCCCceeeecc
Confidence 33455555 889999999999999 566777899999999999998876 789999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC--CeeeEEe
Q 001160 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--GRKQYTF 493 (1134)
Q Consensus 416 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~--~~~~~~~ 493 (1134)
.+.|...+++|+.|..+.+||+.+|+..+ .+.+|.+.|+.++|+.+.. .+++|+.|.++++||-++ .++++.+
T Consensus 67 ~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQil 141 (307)
T KOG0316|consen 67 LSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQIL 141 (307)
T ss_pred ccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccchh
Confidence 99999999999999999999999998877 7889999999999999998 999999999999999875 4678888
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEe
Q 001160 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1134)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1134)
......|.++.+.. ..+++|+.||++|.||++.++..... .+++|++++|++|++..++++. ++++++.|
T Consensus 142 dea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlrLlD 211 (307)
T KOG0316|consen 142 DEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLRLLD 211 (307)
T ss_pred hhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceeeecc
Confidence 88888999998743 78999999999999999977655443 4568999999999999998876 78899999
Q ss_pred CCCCeeEEEecCccCcce-EEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC
Q 001160 574 ESEGAIKRTYSGFRKRSL-GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1134)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 652 (1134)
-.+|+++..+++|..... ..++++.....+++|++||.|++||+.....+..+..++. ..+..++++|.-..++++..
T Consensus 212 k~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~~A~~ 290 (307)
T KOG0316|consen 212 KETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFITATG 290 (307)
T ss_pred cchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCccceeEecC
Confidence 999999999999976432 2456777778999999999999999999999999887654 35789999997777776654
Q ss_pred CCcEEEEEC
Q 001160 653 DNGIKILAN 661 (1134)
Q Consensus 653 dg~i~iw~~ 661 (1134)
. .+..|.-
T Consensus 291 ~-~~~~~~~ 298 (307)
T KOG0316|consen 291 H-GDLFWYQ 298 (307)
T ss_pred C-ceeceee
Confidence 4 4556643
No 52
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.7e-33 Score=278.15 Aligned_cols=241 Identities=17% Similarity=0.261 Sum_probs=215.2
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001160 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~ 486 (1134)
-+.+|..+.|.|+|+.|++|+..|.+.+|+..+-. -...+++|..+|.++.|+++|. +++||+.+|.|++|+..-
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn---FEtilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN---FETILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceee---HHHHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccch
Confidence 34579999999999999999999999999975422 1124568999999999999999 899999999999999654
Q ss_pred CeeeEEecCCC-CCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCC
Q 001160 487 GRKQYTFEGHE-APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1134)
Q Consensus 487 ~~~~~~~~~h~-~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1134)
. .++.+++|. ..|.+++|+|.. ..+++++.||+|+|||....+....+.+|+-.|.++.|+|.-..+++++.
T Consensus 170 n-nVk~~~ahh~eaIRdlafSpnD--skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk---- 242 (464)
T KOG0284|consen 170 N-NVKIIQAHHAEAIRDLAFSPND--SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK---- 242 (464)
T ss_pred h-hhHHhhHhhhhhhheeccCCCC--ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC----
Confidence 4 455566655 899999999954 79999999999999999999998899999999999999999999999974
Q ss_pred CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc-CC
Q 001160 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EG 644 (1134)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~ 644 (1134)
|..|++||.++|.++.++.+|.. .|..+.|+|++++|+++|.|..++++|+++.+.+.++.+|. ..+.+++|+| ..
T Consensus 243 DnlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hk--kdv~~~~WhP~~~ 319 (464)
T KOG0284|consen 243 DNLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHK--KDVTSLTWHPLNE 319 (464)
T ss_pred CceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcch--hhheeeccccccc
Confidence 66899999999999999999998 99999999999999999999999999999988888888774 4799999999 67
Q ss_pred CEEEEEeCCCcEEEEECC
Q 001160 645 SLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~ 662 (1134)
.+|.+|+.||.|..|.+.
T Consensus 320 ~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 320 SLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred cceeeccCCCceEEEecc
Confidence 789999999999999876
No 53
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=100.00 E-value=1.3e-30 Score=273.81 Aligned_cols=651 Identities=16% Similarity=0.199 Sum_probs=359.2
Q ss_pred EEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEc
Q 001160 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 339 ~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
-+..+. |.+.|+.+.|||-...|||+|+.|..|+||.+..|.... ...+..++.+..-.|-|+.|+
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~fH 137 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRFH 137 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeecc
Confidence 455555 999999999999887799999999999999998553221 011222345556679999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC-CeeeEEecCC
Q 001160 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGH 496 (1134)
Q Consensus 418 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~-~~~~~~~~~h 496 (1134)
|...-|...+..|+++|||+.+++.+. ++.+|...|.++.|+.||+ ++++.+.|+.|+|||.+. ++.++...+|
T Consensus 138 pTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 138 PTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred cCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCcccccccc
Confidence 987767777789999999999987665 7889999999999999999 999999999999999874 6788888888
Q ss_pred CCCe-EEEEeeccCCccEEEEEecC----CeEEEEEccCCCce-eEecCC-CCcEEEEEECCCCCEEEEEeeCCCCCCcE
Q 001160 497 EAPV-YSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSR-VDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1134)
Q Consensus 497 ~~~v-~~i~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~-~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1134)
.+.- ..+.|.. +-..|++.+.+ ..|++||.+..... ..+... ...|.---|.||.++++.++. ++.++
T Consensus 213 ~~~rdsRv~w~G--n~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGK---G~~~l 287 (1012)
T KOG1445|consen 213 GGMRDSRVLWAG--NWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGK---GTNKL 287 (1012)
T ss_pred ccchhheeeecc--chhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecC---CcceE
Confidence 7642 2344533 33577777655 46999998865442 233222 224555668999999988773 67788
Q ss_pred EEEeCCCCeeEE--EecCccCcceEEEEEeCCCCEEEEEe-CCCeE----------------------------------
Q 001160 570 VEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQI---------------------------------- 612 (1134)
Q Consensus 570 ~~wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i---------------------------------- 612 (1134)
..+.+...++.- .+..-........++-|....-+-.+ -+..+
T Consensus 288 ~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~ 367 (1012)
T KOG1445|consen 288 FMLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAE 367 (1012)
T ss_pred EEEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCc
Confidence 888876544211 11110000001111111110000000 00000
Q ss_pred -----EEEECCCCeeEEEEe------CCCC----------------CCCcceEEEccCCCEEEEEeCCC-----------
Q 001160 613 -----KFWDMDNMNMLTTVD------ADGG----------------LPASPRLRFNKEGSLLAVTTSDN----------- 654 (1134)
Q Consensus 613 -----~iwd~~~~~~~~~~~------~~~~----------------~~~v~~~~~s~d~~~l~~~~~dg----------- 654 (1134)
.-|=-.+.+.++... .|+. ...|......|...-=.....++
T Consensus 368 p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~ 447 (1012)
T KOG1445|consen 368 PGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVP 447 (1012)
T ss_pred cCcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcC
Confidence 001000111111110 0000 00000000000000000000000
Q ss_pred ---cEEEEECC-----Cc----hhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccc
Q 001160 655 ---GIKILANS-----DG----VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 722 (1134)
Q Consensus 655 ---~i~iw~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1134)
.+|-.+.. ++ ..-...-++....+......+++-.++.-.++ ..++++.-.+.|.-.+ ..+....
T Consensus 448 ~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~pl--t~~~s~~s~~~P~~~k-svPe~~~ 524 (1012)
T KOG1445|consen 448 KKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPL--TDSVSTPSVVGPAFGK-SVPEQPP 524 (1012)
T ss_pred cchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCccc--ccccccccccCccccc-cCCCCCC
Confidence 00000000 00 00000000111111111111110000000000 0000000001111000 0000000
Q ss_pred Cc----cCCCCcccccccccccccccCccceeccCCCCCccc------eeE--eecCCcccccceEEEEEecCCcceEE-
Q 001160 723 SS----LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ------IKA--LRLPDSIAASKVVRLIYTNSGLSLLA- 789 (1134)
Q Consensus 723 ~~----~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~------~~~--~~~~~~~~~~~v~~~~~s~~g~~l~~- 789 (1134)
.. +...........-.-..+--|.+.-|..-.+....+ ++. ..+|+ .+--|..+..++++
T Consensus 525 ~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~Pg-------EsnGfcan~~rvAVP 597 (1012)
T KOG1445|consen 525 VNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPG-------ESNGFCANNKRVAVP 597 (1012)
T ss_pred cccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCC-------ccCceeeccceEEEE
Confidence 00 000000000000000000001221121111111100 000 01111 11223344444433
Q ss_pred -eeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc-CCCEEEEEe-CCeEEEE
Q 001160 790 -LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMSAS-GGKVSLF 866 (1134)
Q Consensus 790 -~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~-dg~~la~~s-dg~i~vw 866 (1134)
.+..|.|.||+++.....|+|....- .. ...|+.+.|.| |...||++. ||.|++|
T Consensus 598 L~g~gG~iai~el~~PGrLPDgv~p~l---------------------~N-gt~vtDl~WdPFD~~rLAVa~ddg~i~lW 655 (1012)
T KOG1445|consen 598 LAGSGGVIAIYELNEPGRLPDGVMPGL---------------------FN-GTLVTDLHWDPFDDERLAVATDDGQINLW 655 (1012)
T ss_pred ecCCCceEEEEEcCCCCCCCccccccc---------------------cc-CceeeecccCCCChHHeeecccCceEEEE
Confidence 45579999999987777666654322 12 67799999999 778888888 8999999
Q ss_pred ECCCC-------eEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEE
Q 001160 867 NMMTF-------KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNAL 939 (1134)
Q Consensus 867 d~~~~-------~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l 939 (1134)
.+..+ ..-..+..|...|+++.|+|--...|++++.|-+|++||+.+++....|.+|.+.|.+++|||||+.+
T Consensus 656 r~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~ 735 (1012)
T KOG1445|consen 656 RLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRI 735 (1012)
T ss_pred EeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcce
Confidence 98754 34456788999999999999777899999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EE----CCeEEEEeCCCcceeccCCC-
Q 001160 940 VSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VH----ESQISVYDSKLECSRSWSPK- 1013 (1134)
Q Consensus 940 ~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~----d~~v~vwd~~~~~~~~~~~~- 1013 (1134)
||.+.||+|++|+-.+++.. +..-.+... ..-..+.|.-||+++++ |. .++|.+||...-..+.+...
T Consensus 736 AtVcKDg~~rVy~Prs~e~p----v~Eg~gpvg--tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~ 809 (1012)
T KOG1445|consen 736 ATVCKDGTLRVYEPRSREQP----VYEGKGPVG--TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQV 809 (1012)
T ss_pred eeeecCceEEEeCCCCCCCc----cccCCCCcc--CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeee
Confidence 99999999999998886632 222222221 23457889999999988 43 46799999822111111000
Q ss_pred CCCCCCeEEEEEccCCC-EEEEEecCCcEEEEeCCCcc
Q 001160 1014 DALPAPISSAIYSCDGL-LVYAGFCDGAIGVFDAETLR 1050 (1134)
Q Consensus 1014 ~~h~~~v~~v~~s~dg~-~l~~~~~dg~I~vwd~~~~~ 1050 (1134)
-.....+.--.+.+|.. ++++|-.|..|.+|.+-...
T Consensus 810 lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 810 LDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred ecccCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 00011122223455654 57788899999999976543
No 54
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-30 Score=247.63 Aligned_cols=243 Identities=16% Similarity=0.298 Sum_probs=208.0
Q ss_pred ccccCCcCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCccceeeEE-ecccCCeeEEEEecCCCcEEEEEEcCCCcEE
Q 001160 403 LLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEI-DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spd-g~~las~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~ 480 (1134)
.+++|.+.|..++|+|- |..||+|+.|+.|++|+...+........+ .+|+..|.+++|+|.|+ +|++++.|.++.
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~--~La~aSFD~t~~ 86 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR--YLASASFDATVV 86 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc--EEEEeeccceEE
Confidence 37789999999999998 999999999999999999865444433333 37999999999999999 999999999999
Q ss_pred EEECCCC--eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCC---ceeEecCCCCcEEEEEECCCCCE
Q 001160 481 VWDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG---SRVDYDAPGNWCTMMAYSADGTR 555 (1134)
Q Consensus 481 iwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~ 555 (1134)
||.-..+ +++.++.||...|.+++|+.++ .+|++++.|+.|-+|.+.... +...+..|...|..+.|+|...+
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG--~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSASG--NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcCCC--CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 9985543 6788999999999999997755 899999999999999988544 34578899999999999999999
Q ss_pred EEEEeeCCCCCCcEEEEeCC---CCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCC
Q 001160 556 LFSCGTSKEGESHLVEWNES---EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632 (1134)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1134)
|+++++ |.+|++|+-. ...+++++.+|.. .|.+++|++.|..+++++.|++++||...+. +. ..+.
T Consensus 165 L~S~SY----DnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~s 233 (312)
T KOG0645|consen 165 LFSCSY----DNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LS-GMHS 233 (312)
T ss_pred eEEecc----CCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeeeccC-----cc-hhcc
Confidence 999997 7789999876 3468899999988 9999999999999999999999999986521 21 1223
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001160 633 PASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 633 ~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
..++.++|. ...|++++.|+.|++|.-.
T Consensus 234 r~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 234 RALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred cceEeeeec--ccceEeccCCCEEEEEEec
Confidence 468889998 4589999999999999754
No 55
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.8e-31 Score=301.11 Aligned_cols=291 Identities=26% Similarity=0.432 Sum_probs=244.8
Q ss_pred cccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc
Q 001160 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1134)
+...|.++.|+++|+.+++++.++.+++|+...... .... .+.+ | ...|.+++|+|
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--------------------~~~~-~l~~--h-~~~v~~~~fs~ 213 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--------------------NLLR-ELSG--H-TRGVSDVAFSP 213 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--------------------hhhc-cccc--c-ccceeeeEECC
Confidence 467889999999999999999999999998632110 0111 1233 7 89999999999
Q ss_pred CCCEEEEEe-CCeEEEEEC-CCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceE
Q 001160 851 NDSYVMSAS-GGKVSLFNM-MTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT 928 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~-~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~ 928 (1134)
|++++++++ |++|+|||+ ..+..++++.+|...|++++|+| +++++++|+.|++|+|||+.+++++..+.+|.+.|+
T Consensus 214 d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 214 DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999 999999999 66699999999999999999999 779999999999999999999999999999999999
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE-ECCeEEEEeC-CCcc
Q 001160 929 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLEC 1006 (1134)
Q Consensus 929 ~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~v~vwd~-~~~~ 1006 (1134)
+++|++|+++|++++.|+.|++||+.++... +.....++.... .++.++|+|++++++++ .|+.+++||+ .+.+
T Consensus 293 ~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~ 368 (456)
T KOG0266|consen 293 GLAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS 368 (456)
T ss_pred EEEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcc
Confidence 9999999999999999999999999998843 334455555433 68999999999999995 5779999999 6777
Q ss_pred eeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEE
Q 001160 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIA 1086 (1134)
Q Consensus 1007 ~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 1086 (1134)
...+..+..-...+.+..++++++++++|+.|+.|++|++.++..+..+..+. ......+.++| ..++++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~---------~~~~~~~~~~~-~~~~~~ 438 (456)
T KOG0266|consen 369 VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS---------KAAVSDLSSHP-TENLIA 438 (456)
T ss_pred eeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC---------CCceeccccCC-CcCeee
Confidence 77765543111255566678899999999999999999999999998887662 24456788888 678999
Q ss_pred EEe--CCCcEEEEecC
Q 001160 1087 LGM--SDGAVHVVEPS 1100 (1134)
Q Consensus 1087 s~~--~Dg~v~vW~~~ 1100 (1134)
+++ .|+.+++|...
T Consensus 439 s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 439 SSSFEGDGLIRLWKYD 454 (456)
T ss_pred ecCcCCCceEEEecCC
Confidence 988 78999999864
No 56
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.1e-32 Score=269.48 Aligned_cols=271 Identities=22% Similarity=0.331 Sum_probs=234.1
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
...|+|+.+..+ .+++|..|++|+|||.++..++.. +.||++.|.|+.| |.+.|++
T Consensus 197 skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqy--d~rviis 252 (499)
T KOG0281|consen 197 SKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQY--DERVIVS 252 (499)
T ss_pred CCceEEEEecch---hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeec--cceEEEe
Confidence 468999999533 478999999999999998887764 8899999999999 6679999
Q ss_pred EeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee---eEEecCCCCCeEE
Q 001160 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVYS 502 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~ 502 (1134)
|+.|.+|+|||+++++.+. ++-+|...|..+.|+.. +++|++.|.+|.+||+..... .+.+.||...|+.
T Consensus 253 GSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNv 325 (499)
T KOG0281|consen 253 GSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 325 (499)
T ss_pred cCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheee
Confidence 9999999999999999887 77799999999999743 899999999999999987653 3567899999999
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE
Q 001160 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1134)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1134)
+.|+. +++++++.|.+|++|++.+.+.+..+.+|...|.|+.+ .|+++++|+. |.+|++||+..|.+++.
T Consensus 326 Vdfd~----kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLRv 395 (499)
T KOG0281|consen 326 VDFDD----KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLRV 395 (499)
T ss_pred ecccc----ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHHH
Confidence 98843 79999999999999999999999999999999988876 4678888875 88899999999999999
Q ss_pred ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeE---------EEEeCCCCCCCcceEEEccCCCEEEEEeCC
Q 001160 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML---------TTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1134)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 653 (1134)
+.||.+ -|.|+.|. .+.+++|+.||+|++||+..+... ..+.. +.+.|..+.|. ...+++++.|
T Consensus 396 LeGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~--hsgRVFrLQFD--~fqIvsssHd 468 (499)
T KOG0281|consen 396 LEGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE--HSGRVFRLQFD--EFQIISSSHD 468 (499)
T ss_pred HhchHH-hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhh--ccceeEEEeec--ceEEEeccCC
Confidence 999998 89999996 578999999999999999876432 22222 33467777774 5678899999
Q ss_pred CcEEEEECCCc
Q 001160 654 NGIKILANSDG 664 (1134)
Q Consensus 654 g~i~iw~~~~~ 664 (1134)
.+|.|||..++
T Consensus 469 dtILiWdFl~~ 479 (499)
T KOG0281|consen 469 DTILIWDFLNG 479 (499)
T ss_pred CeEEEEEcCCC
Confidence 99999999887
No 57
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.8e-30 Score=283.38 Aligned_cols=282 Identities=24% Similarity=0.408 Sum_probs=251.5
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
|.++|++++|+|+++ ++++|+.||.|.+|++.+++.... +..|...+.++.|+|++++++
T Consensus 8 h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~~~~l~ 67 (289)
T cd00200 8 HTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASADGTYLA 67 (289)
T ss_pred cCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCCCCEEE
Confidence 889999999999998 678888899999999998764432 456888999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1134)
+++.+|.|++||+.+++... .+..|...|.++.|+++++ ++++++.|+.|.+||+.+++....+..|...|.+++
T Consensus 68 ~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~ 142 (289)
T cd00200 68 SGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA 142 (289)
T ss_pred EEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEE
Confidence 99999999999999875554 6678998999999999977 788888899999999999999999999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEec
Q 001160 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1134)
|++.+ .++++++.|+.|++||++..+....+..+...+.++.|+|+++.+++++. ++.+++||+.+++.+..+.
T Consensus 143 ~~~~~--~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~~ 216 (289)
T cd00200 143 FSPDG--TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTLR 216 (289)
T ss_pred EcCcC--CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecchh
Confidence 98863 78888888999999999988888888888889999999999999998874 7789999999999998887
Q ss_pred CccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEE
Q 001160 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1134)
Q Consensus 585 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~ 660 (1134)
.+.. .+.++.|+|++.++++++.+|.|++|++.+++....+..+ ...+.+++|++++.+|++++.||.+++|+
T Consensus 217 ~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 217 GHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 7776 8999999999888888888999999999998888888755 34799999999999999999999999996
No 58
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.5e-32 Score=279.05 Aligned_cols=292 Identities=19% Similarity=0.343 Sum_probs=249.9
Q ss_pred eeeEEecccCCeeEEEEec-CCCcEEEEEEcCCCcEEEEECCC-CeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCe
Q 001160 445 QHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 522 (1134)
Q Consensus 445 ~~~~~~~h~~~v~~l~~s~-d~~~~~l~sg~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~ 522 (1134)
....+.+|...|+++.|.| .+. +|++++.|+.|+||++-. +++++++.+|..+|.+++|+.. |..+++++.|+.
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~h--LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~--g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGH--LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNC--GTSFLSASFDRF 281 (503)
T ss_pred heeeccCCccccchhhhccceee--EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhcccc--CCeeeeeeccee
Confidence 3447889999999999999 666 899999999999999987 9999999999999999999765 489999999999
Q ss_pred EEEEEccCCCceeEecCCCCcEEEEEECCCC-CEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCC
Q 001160 523 IKAWLYDYLGSRVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN 601 (1134)
Q Consensus 523 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 601 (1134)
|++||++++++...+.. +..++|+.|.|++ +.+++|+. ++.|+.||+++++.++.+..|-+ .|..+.|-++|.
T Consensus 282 lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~s----d~ki~~wDiRs~kvvqeYd~hLg-~i~~i~F~~~g~ 355 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGS----DKKIRQWDIRSGKVVQEYDRHLG-AILDITFVDEGR 355 (503)
T ss_pred eeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecC----CCcEEEEeccchHHHHHHHhhhh-heeeeEEccCCc
Confidence 99999999999887763 4578999999999 66666664 78899999999999999998887 899999999999
Q ss_pred EEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhh--hhhhcCCccccc
Q 001160 602 RFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRL--LRMLEGRAMDKN 679 (1134)
Q Consensus 602 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~ 679 (1134)
++++.++|++++||+...+-++..+.... .....++..+|++++++.-+.|+.|.++.+....+. .+.+++|.
T Consensus 356 rFissSDdks~riWe~~~~v~ik~i~~~~-~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~---- 430 (503)
T KOG0282|consen 356 RFISSSDDKSVRIWENRIPVPIKNIADPE-MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS---- 430 (503)
T ss_pred eEeeeccCccEEEEEcCCCccchhhcchh-hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee----
Confidence 99999999999999999887776554332 235789999999999999999999999986433110 11111110
Q ss_pred CCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCcc
Q 001160 680 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 759 (1134)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~ 759 (1134)
T Consensus 431 -------------------------------------------------------------------------------- 430 (503)
T KOG0282|consen 431 -------------------------------------------------------------------------------- 430 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCC
Q 001160 760 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839 (1134)
Q Consensus 760 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~ 839 (1134)
-
T Consensus 431 ------------------------------------------------------------------------------v- 431 (503)
T KOG0282|consen 431 ------------------------------------------------------------------------------V- 431 (503)
T ss_pred ------------------------------------------------------------------------------c-
Confidence 1
Q ss_pred CCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 001160 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 910 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd 910 (1134)
.+.-..+.|||||++|++|+ +|.+.+||.++.+.+..+++|+..+..+.|+|.....+|+++.||.|++||
T Consensus 432 aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 432 AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 33446689999999999998 999999999999999999999999999999998888999999999999996
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.2e-32 Score=280.48 Aligned_cols=294 Identities=17% Similarity=0.262 Sum_probs=250.0
Q ss_pred ccceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccC-ccccccccceeeccccccccccccccccCCcCeE
Q 001160 335 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1134)
Q Consensus 335 ~~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 412 (1134)
.|...+.++. |...|+++.|.|-.-.||++|+.|+.|+||++.. ++++++ +.+|..+|.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~Vr 262 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPVR 262 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehh-------------------hhcchhhhh
Confidence 3666777887 9999999999994435999999999999999987 677665 789999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE
Q 001160 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1134)
Q Consensus 413 ~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~ 492 (1134)
.++|+++|..+.+++.|+.+++||+++|+++. .+. -...++|+.|.||+.+ .+++|+.|+.|+.||+++++.+++
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~---~f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLS---RFH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEE---EEe-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHH
Confidence 99999999999999999999999999998765 332 3456899999999955 788999999999999999999999
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCcee-EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEE
Q 001160 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1134)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1134)
+..|-+.|..+.|.+.+ .++++.+.|+++++|+.+..-... ..........++..+|+++++++-+. ++.|.+
T Consensus 338 Yd~hLg~i~~i~F~~~g--~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~i 411 (503)
T KOG0282|consen 338 YDRHLGAILDITFVDEG--RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAI 411 (503)
T ss_pred HHhhhhheeeeEEccCC--ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEE
Confidence 99999999999997755 899999999999999998766544 33344557789999999999998765 777999
Q ss_pred EeCCCC---eeEEEecCccCc-ceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc-CCCE
Q 001160 572 WNESEG---AIKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSL 646 (1134)
Q Consensus 572 wd~~~~---~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~ 646 (1134)
+.+... ...+.|.+|... .-..+.|||||.+|++|+.||.+.+||.++-+.+..+..|. ..+..+.|+| ....
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~--~~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD--QPCIGVDWHPVEPSK 489 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC--cceEEEEecCCCcce
Confidence 886532 234567777542 23458899999999999999999999999999999999874 4789999999 5568
Q ss_pred EEEEeCCCcEEEEE
Q 001160 647 LAVTTSDNGIKILA 660 (1134)
Q Consensus 647 l~~~~~dg~i~iw~ 660 (1134)
+|+++.+|.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
No 60
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.9e-32 Score=264.99 Aligned_cols=292 Identities=18% Similarity=0.269 Sum_probs=250.5
Q ss_pred cccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc
Q 001160 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1134)
..+.+.+..|||||++|++++-||.|.+|+..+++...+-+..+.- ... .+ ..+|.|+.||.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd---------~fM--------Mm-d~aVlci~FSR 273 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD---------NFM--------MM-DDAVLCISFSR 273 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhc---------cee--------ec-ccceEEEeecc
Confidence 4566789999999999999999999999998776654443332221 111 14 88999999999
Q ss_pred CCCEEEEEe-CCeEEEEECCCCeEEEEec-CCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceE
Q 001160 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFM-SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT 928 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~ 928 (1134)
|...+|+|+ ||.|+||.+.+|.|++.|. .|+..|+|+.||. |+..+.+++.|.+++|--+.+|++++.++||++-|+
T Consensus 274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn 352 (508)
T KOG0275|consen 274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN 352 (508)
T ss_pred cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCcccccc
Confidence 999999999 9999999999999999997 7999999999999 888888999999999999999999999999999999
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCC-cEEEEE-ECCeEEEEeCCCcc
Q 001160 929 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ-THLLVV-HESQISVYDSKLEC 1006 (1134)
Q Consensus 929 ~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg-~~l~~~-~d~~v~vwd~~~~~ 1006 (1134)
...|++||..+++++.||+|++|+.++.+++....... .. ..|..+..-|.+ ..++++ ..++|.+.++.++.
T Consensus 353 ~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~---~d---~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv 426 (508)
T KOG0275|consen 353 EATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG---TD---YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV 426 (508)
T ss_pred ceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC---Cc---ccceeEEEcCCCCceEEEEcCCCeEEEEeccceE
Confidence 99999999999999999999999999998765433221 11 467777777654 455555 57899999999999
Q ss_pred eeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEE
Q 001160 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIA 1086 (1134)
Q Consensus 1007 ~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 1086 (1134)
++.+..+....+...+.+.||.|.++++.++|+.++.|...+|.+-.++..|. ..++.++-+| ..+.||
T Consensus 427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE----------kdvIGl~HHP-HqNllA 495 (508)
T KOG0275|consen 427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE----------KDVIGLTHHP-HQNLLA 495 (508)
T ss_pred EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc----------ccccccccCc-ccchhh
Confidence 99998887778888899999999999999999999999999999998887653 5667888899 669999
Q ss_pred EEeCCCcEEEEe
Q 001160 1087 LGMSDGAVHVVE 1098 (1134)
Q Consensus 1087 s~~~Dg~v~vW~ 1098 (1134)
+-++||.+++|.
T Consensus 496 sYsEDgllKLWk 507 (508)
T KOG0275|consen 496 SYSEDGLLKLWK 507 (508)
T ss_pred hhcccchhhhcC
Confidence 999999999996
No 61
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=9e-31 Score=245.01 Aligned_cols=287 Identities=17% Similarity=0.279 Sum_probs=253.9
Q ss_pred EEEecCCCCeeEEEEec---CCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEE
Q 001160 340 VRTLNQGSNVMSMDFHP---QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1134)
Q Consensus 340 ~~~l~h~~~V~~v~~sp---dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~ 416 (1134)
+..-.|..+|..++||| +| ++|.+++.||.-.+-+=++|..+-+ +.+|.+.|++..+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l 67 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATL 67 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeec
Confidence 33345888999999985 67 5899999999999988888887765 7899999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe-eeEEecC
Q 001160 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEG 495 (1134)
Q Consensus 417 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~ 495 (1134)
..+..+.|+++.|-+.++||.-+|..+. .| .|..-|.+++|+.|.+ +|+||+.++.++|+|++..+ +...+.+
T Consensus 68 ~~na~~aasaaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~g 141 (334)
T KOG0278|consen 68 NKNATRAASAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISG 141 (334)
T ss_pred Cchhhhhhhhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcC
Confidence 9999999999999999999999998776 44 4888999999999999 89999999999999998754 4578899
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC
Q 001160 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1134)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1134)
|.+.|..+.|.... +.+++.+.|++||+||.+++.....+.. ...|+++.++++|+++.++. .+.|.+||..
T Consensus 142 htg~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~-----gssV~Fwdak 213 (334)
T KOG0278|consen 142 HTGGIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAY-----GSSVKFWDAK 213 (334)
T ss_pred CCCcceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEec-----CceeEEeccc
Confidence 99999999998765 7899999999999999999988887764 45799999999999998774 4569999999
Q ss_pred CCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEE-eCCCCCCCcceEEEccCCCEEEEEeCCC
Q 001160 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV-DADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1134)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~~~~~dg 654 (1134)
+..+++.++... .|.+.+++|+...+++|++|..++.||..+++.+..+ .+| ..+|.|+.|+|||...++|+.||
T Consensus 214 sf~~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh--~gpVhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 214 SFGLLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH--FGPVHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred cccceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC--CCceEEEEECCCCceeeccCCCc
Confidence 999999988766 5889999999999999999999999999999999886 444 56899999999999999999999
Q ss_pred cEEEEECCCc
Q 001160 655 GIKILANSDG 664 (1134)
Q Consensus 655 ~i~iw~~~~~ 664 (1134)
+|++|....+
T Consensus 290 TirlWQt~~~ 299 (334)
T KOG0278|consen 290 TIRLWQTTPG 299 (334)
T ss_pred eEEEEEecCC
Confidence 9999998766
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=5.7e-29 Score=307.46 Aligned_cols=291 Identities=14% Similarity=0.164 Sum_probs=237.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC-CCCEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp-dg~~l 423 (1134)
|.+.|++++|+|+|+ ++|+|+.||.|+|||+.+...... . ...+...+ .+...|.+++|+| ++.+|
T Consensus 482 ~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~-~~~~~v~~l~~~~~~~~~l 548 (793)
T PLN00181 482 SSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVEL-ASRSKLSGICWNSYIKSQV 548 (793)
T ss_pred CCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEe-cccCceeeEEeccCCCCEE
Confidence 889999999999998 789999999999999764211000 0 00000011 2356799999987 57899
Q ss_pred EEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEec-CCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEE
Q 001160 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1134)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1134)
|+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++..+..+..+ ..|.+
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~ 622 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC 622 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence 999999999999999876554 6779999999999997 667 8999999999999999999998888754 67999
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEccCCC-ceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC-----
Q 001160 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----- 576 (1134)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----- 576 (1134)
+.|++. +|.+|++|+.|+.|++||+++.. ....+.+|...|.++.|. ++.++++++. |+.|++||+..
T Consensus 623 v~~~~~-~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 623 VQFPSE-SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSISGI 696 (793)
T ss_pred EEEeCC-CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCcccc
Confidence 998643 45899999999999999998765 355777888999999997 7788888874 78899999974
Q ss_pred -CeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEe-----------CCCCCCCcceEEEccCC
Q 001160 577 -GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD-----------ADGGLPASPRLRFNKEG 644 (1134)
Q Consensus 577 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~v~~~~~s~d~ 644 (1134)
..++..+.+|.. .+.+++|++++.+|++|+.|+.|++|+.....++..+. ...+...|.+++|++++
T Consensus 697 ~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~ 775 (793)
T PLN00181 697 NETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS 775 (793)
T ss_pred CCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC
Confidence 357788988876 88999999999999999999999999987665443322 12223468999999999
Q ss_pred CEEEEEeCCCcEEEEEC
Q 001160 645 SLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 645 ~~l~~~~~dg~i~iw~~ 661 (1134)
..|++|+.+|.|+||++
T Consensus 776 ~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 776 STLVAANSTGNIKILEM 792 (793)
T ss_pred CeEEEecCCCcEEEEec
Confidence 99999999999999986
No 63
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-29 Score=235.92 Aligned_cols=248 Identities=18% Similarity=0.266 Sum_probs=221.4
Q ss_pred ccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEE
Q 001160 401 NALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1134)
Q Consensus 401 ~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~ 480 (1134)
..++.++.++|..+.|+-||+|.++++.|.+|++|+...+..++ ++.+|...|..++.+.|+. .+++|+.|+.|.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~ 84 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQ 84 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEE
Confidence 34578899999999999999999999999999999999998777 8889999999999999999 799999999999
Q ss_pred EEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCC--ceeEecCCCCcEEEEEECCCCCEEEE
Q 001160 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSADGTRLFS 558 (1134)
Q Consensus 481 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1134)
+||+.+|+.++.|.+|.+.|+.+.|+... ..+++|+.|.++++||-++.. ++..+......|.++..+ +..+++
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNees--SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIva 160 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNEES--SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVA 160 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecCcc--eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEe
Confidence 99999999999999999999999997654 899999999999999988654 455566666678888765 456777
Q ss_pred EeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceE
Q 001160 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1134)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1134)
++. ||+++.||++.|.....+-++ +|++++|+++++..++++.|+++++.|-.+|+++..+.+|.....-..+
T Consensus 161 GS~----DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 161 GSV----DGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred ecc----CCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 765 889999999999988877776 8999999999999999999999999999999999999988766555677
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 639 RFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 639 ~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+++.....+++|+.||.+.+||+.+.
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccc
Confidence 88888889999999999999999877
No 64
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=8.7e-31 Score=256.21 Aligned_cols=232 Identities=16% Similarity=0.310 Sum_probs=206.5
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001160 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~ 486 (1134)
....|.|+.+ |...+++|..|++|+|||.++-.+++ .+.||.+.|.|+.|. .+ +|++|+.|.+|++||+++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence 4456999998 77789999999999999999877666 788999999999985 44 899999999999999999
Q ss_pred CeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCce---eEecCCCCcEEEEEECCCCCEEEEEeeCC
Q 001160 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR---VDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
|+++.++-+|...|..+.|+. .++++++.|.++.+||+...... ..+.+|...|+.+.|+. +++++++
T Consensus 267 ge~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsAS--- 337 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS--- 337 (499)
T ss_pred CchhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEec---
Confidence 999999999999999999854 69999999999999999877643 36778888999999865 5899886
Q ss_pred CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccC
Q 001160 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 643 (1134)
+|.+|++|++.+++.++++.+|.. .|.|+.+. ++++++|+.|.+|++||++.|.++..+++|.. -|.++.|.
T Consensus 338 -gDRTikvW~~st~efvRtl~gHkR-GIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd-- 409 (499)
T KOG0281|consen 338 -GDRTIKVWSTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD-- 409 (499)
T ss_pred -CCceEEEEeccceeeehhhhcccc-cceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec--
Confidence 488999999999999999999988 78888774 78999999999999999999999999998854 68999995
Q ss_pred CCEEEEEeCCCcEEEEECCCc
Q 001160 644 GSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.+.+++|+.||+|++||+.++
T Consensus 410 ~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 410 NKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred CceeeeccccceEEEEecccc
Confidence 668999999999999999876
No 65
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.2e-28 Score=270.51 Aligned_cols=247 Identities=23% Similarity=0.405 Sum_probs=220.6
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+.+|.++|.+++|+|++++|++++.||.+++|++.+++... .+..|...+..+.|+++++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 56899999999999999999999999999999999876443 6678999999999999998 899999999999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCC
Q 001160 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
+.+++.+..+..|...+.++.|++. +.++++++.|+.|++||+.+.+....+..+...+.+++|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 9998888899999999999999876 378888888999999999988888888888889999999999888888753
Q ss_pred CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccC
Q 001160 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 643 (1134)
++.|++||+++++.+..+..+.. .+.++.|+|+++.+++++.++.|++||+..++.+..+..+. ..+.+++|+++
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~ 230 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFSPD 230 (289)
T ss_pred --CCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC--CceEEEEEcCC
Confidence 77899999999998888887766 89999999999999999999999999999988888776543 37899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCc
Q 001160 644 GSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+.++++++.+|.|++|+..++
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCc
Confidence 888888888999999998765
No 66
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.4e-28 Score=222.61 Aligned_cols=313 Identities=16% Similarity=0.241 Sum_probs=244.1
Q ss_pred cceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEE
Q 001160 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1134)
Q Consensus 336 ~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~ 415 (1134)
..+++.++.....|.+++|+|.|. +.|+|+...+.+|.-+..-..++. -.+..+..+......-+.|.+.|.|.+
T Consensus 22 ~f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~----~hea~~~pp~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 22 HFEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRH----AHEAAKQPPSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred ceEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCccc----ccccccCCCeEEeeeccccCccEEEEE
Confidence 345677777888999999999998 889999999999887654322211 000011111122223467999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcC--CCCccceeeEEecccCCeeEEEEecC---CCcEEEEEEc-CCCcEEEEECCCCee
Q 001160 416 WGPDGLMLGVAFSKHIVHLYTYN--PTGELRQHLEIDAHVGGVNDIAFAHP---NKQLCIVTCG-DDKMIKVWDVVAGRK 489 (1134)
Q Consensus 416 ~spdg~~las~~~dg~i~iwd~~--~~~~~~~~~~~~~h~~~v~~l~~s~d---~~~~~l~sg~-~d~~i~iwd~~~~~~ 489 (1134)
|||+|.+||+|+.|.+|++...+ +.+......++.-|.+.|..++|..+ +.. +|++++ .|..|++-|-.+|+.
T Consensus 97 ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~ 175 (350)
T KOG0641|consen 97 WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQG 175 (350)
T ss_pred ecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCc
Confidence 99999999999999999987654 33444445578889999999999654 222 566654 588899999999999
Q ss_pred eEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecC-------CCCcEEEEEECCCCCEEEEEeeC
Q 001160 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------PGNWCTMMAYSADGTRLFSCGTS 562 (1134)
Q Consensus 490 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~~ 562 (1134)
.+.+.||.+.|.++- +-+|..+++|+.|.+|++||++-..++..+.. ....|.+++..|.|++|+++-.
T Consensus 176 ~~a~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~- 251 (350)
T KOG0641|consen 176 FHALSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA- 251 (350)
T ss_pred ceeecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC-
Confidence 999999999999884 22448999999999999999998777665432 2357999999999999999875
Q ss_pred CCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCC--eeEEEEeCCCCCCCcceEEE
Q 001160 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTVDADGGLPASPRLRF 640 (1134)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~ 640 (1134)
|....+||++.++.++.|..|.. .|+|+.|+|...++++++.|..|++-|+... ..+..+....+...+..+.|
T Consensus 252 ---dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rw 327 (350)
T KOG0641|consen 252 ---DSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRW 327 (350)
T ss_pred ---CCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEe
Confidence 77799999999999999999988 8999999999999999999999999998642 12222222233456788999
Q ss_pred ccCCCEEEEEeCCCcEEEEECC
Q 001160 641 NKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 641 s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
+|..--+++.+.|.++.+|-++
T Consensus 328 h~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 328 HPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cCccceeeeccCcceEEEeccC
Confidence 9998889999999999999753
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6e-29 Score=256.06 Aligned_cols=283 Identities=18% Similarity=0.258 Sum_probs=242.0
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
..+.|.+++|||...+=+|+.+ .-.+.||+..+...... +......|.++.|-.||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeEEE
Confidence 3568999999997764444433 45899999887765542 334567899999999999999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1134)
+|+..|.|+|+|+.+...++ .+.+|+.+|..+.|+|++.. .+++|++|+.+++||+.+......+.+|++.|.|.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999977654555 67899999999999998876 899999999999999999987779999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee-EEEe
Q 001160 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTY 583 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~ 583 (1134)
++|..+ ..++|||.||.|++||++.......--.|+.+|..+.+-|.|..+++++ ...+++||+.+|.. +..+
T Consensus 161 ~~~~~~-hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPAND-HIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccCCC-eEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhh
Confidence 998754 7999999999999999998865555556889999999999999999986 45699999996554 4445
Q ss_pred cCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
..|.+ .|+|+++..++..|+++|-|+.|++||+.+.+.+..+... .+|.+++.+|+++.++.|..+|.+.+-+.
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~---~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP---GPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc---cceeeEEecCCCceEEEecccceeeeehh
Confidence 54776 9999999999999999999999999999999999988765 37899999999999999999999877643
No 68
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.9e-28 Score=302.84 Aligned_cols=325 Identities=12% Similarity=0.125 Sum_probs=241.0
Q ss_pred cCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccC
Q 001160 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP 823 (1134)
Q Consensus 744 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~ 823 (1134)
+|-.++|+..........+.-. ...|...|.+++|+|+|+++++++.|+.|++|++..... .+...
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~--~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~--~~~~~---------- 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGD--LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIK--DGRDI---------- 522 (793)
T ss_pred hhhhhhhcccceEEEEeecccc--ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccc--ccccc----------
Confidence 3556667666432211111111 133788999999999999999999999999999743110 00000
Q ss_pred CCCCccccccCCCCCCCCceEEEEecc-CCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEe
Q 001160 824 PSGTLMTNDINESKPTEESAACIALSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM 901 (1134)
Q Consensus 824 ~~~~~~~~~~~~~~h~~~~i~~~~~s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~ 901 (1134)
.... ..+. + ...+.+++|++ ++.+||+++ ||+|++||+.+++.+..+.+|...|++++|+|.++.+|++|+
T Consensus 523 --~~~~-~~~~---~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs 595 (793)
T PLN00181 523 --HYPV-VELA---S-RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS 595 (793)
T ss_pred --ccce-EEec---c-cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEc
Confidence 0000 0011 2 56789999987 578999998 999999999999999999999999999999975789999999
Q ss_pred CCCcEEEEEcCCceEEEEecCcccceEEEEEe-cCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEE
Q 001160 902 EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS-PTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 980 (1134)
Q Consensus 902 ~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s-~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 980 (1134)
.||+|++||+.++..+..+..| ..|.++.|+ +++.+|++|+.|+.|++||+.+.+. .+....+|. ..|..+
T Consensus 596 ~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~----~~~~~~~h~---~~V~~v 667 (793)
T PLN00181 596 DDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL----PLCTMIGHS---KTVSYV 667 (793)
T ss_pred CCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc----cceEecCCC---CCEEEE
Confidence 9999999999999988888755 679999995 5799999999999999999987542 122334555 468999
Q ss_pred EECCCCcEEEE-EECCeEEEEeCCCc----ceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeec
Q 001160 981 QFHNDQTHLLV-VHESQISVYDSKLE----CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055 (1134)
Q Consensus 981 ~fspdg~~l~~-~~d~~v~vwd~~~~----~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~ 1055 (1134)
.|. ++.+|++ +.|++|++||+... ....+....+|...+.+++|++++.+|++|+.|+.|++|+......+...
T Consensus 668 ~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~ 746 (793)
T PLN00181 668 RFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSY 746 (793)
T ss_pred EEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEE
Confidence 997 6677777 67999999998321 11112233567899999999999999999999999999998876554333
Q ss_pred CCcccccc---cccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEec
Q 001160 1056 GPSAYIPT---YAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1099 (1134)
Q Consensus 1056 ~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~ 1099 (1134)
......+. ....+...+.+++|+| ++.+|++|+.||.|++|++
T Consensus 747 ~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 747 KFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence 21111000 0122334577999999 7899999999999999996
No 69
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.97 E-value=1.7e-27 Score=250.51 Aligned_cols=670 Identities=13% Similarity=0.175 Sum_probs=359.4
Q ss_pred ccccCCcCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCc--c-ceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCc
Q 001160 403 LLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGE--L-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~sp-dg~~las~~~dg~i~iwd~~~~~~--~-~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~ 478 (1134)
++.+|.+.|+.+.||| +..+||+|+.|..|+||.+..+-. + ..-..+.+..-.|.++.|+|.... +++ .+.-|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~-s~a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILA-SGAHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEE-eccCce
Confidence 4788999999999999 677999999999999999985432 1 111123334457899999998774 444 455789
Q ss_pred EEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCce-eEecCCCC-cEEEEEECCCCCEE
Q 001160 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-VDYDAPGN-WCTMMAYSADGTRL 556 (1134)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~-~v~~~~~s~~~~~l 556 (1134)
++|||+.+++.+..+.+|...|.++.|+. ||.+|++.+.|+.|+|||.+..... ....+|++ .-..+.|.-+-..|
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~Wse--DG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWSE--DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhcccccc--CCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 99999999999999999999999999955 6699999999999999999876554 34455544 44567777776678
Q ss_pred EEEeeCCCCCCcEEEEeCCC-CeeEEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEE--EEeCCCCC
Q 001160 557 FSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLT--TVDADGGL 632 (1134)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~--~~~~~~~~ 632 (1134)
++.+.+......+++||.+. +.+++++.......|..--|.||.+.++.+| .+.+++++.+...++.- .+.....
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle- 308 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLE- 308 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcch-
Confidence 77766544567799999886 4566666554443566567899988877655 67888888876554321 1110000
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEECCCc----------hhhhhhhcCCcccccCCCCCCCCCCCccccccCCCccc
Q 001160 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDG----------VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1134)
Q Consensus 633 ~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1134)
......++-|...+-+..+. ..+++.+... .+..+.|.....+-.... .+. ...-..+.....+
T Consensus 309 ~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~-~p~---~~ageWlnG~Nq~ 382 (1012)
T KOG1445|consen 309 EQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGA-EPG---CTAGEWLNGTNQV 382 (1012)
T ss_pred hhhccceecchhhhhhcchh--hhhheecccCceeecccccchhhhhhhhhhhCccccCC-ccC---cCccceecCcccc
Confidence 00011112221111111110 0111111100 000111100000000000 000 0000000000000
Q ss_pred ccccCCCCCCCCC------CCCCcccCccCCCCccc------------------ccc--cccccccccCccceeccCCCC
Q 001160 703 SAAIAPTLERPDR------GPPAVSISSLGTIDGSR------------------LVD--VKPRVAEDVDKIKSWRIPDIS 756 (1134)
Q Consensus 703 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~------------------~~~--~~~~~~~~~~~i~~w~~~~~~ 756 (1134)
..-..+.|..... ..+.+......+...++ .|+ ....+. ....++-.+.....
T Consensus 383 vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~-~~~e~r~l~~~~~E 461 (1012)
T KOG1445|consen 383 VQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVP-KKEEVRELDYRPYE 461 (1012)
T ss_pred ccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcC-cchhhhhhcccccc
Confidence 0000001100000 00000000000000000 011 111111 00111111111000
Q ss_pred CccceeEe---ecCCcccccceEEEEEecCCcceEEeec----c--CeeEEeecccccCCC----C--CCcccc------
Q 001160 757 DPSQIKAL---RLPDSIAASKVVRLIYTNSGLSLLALAS----N--AVHKLWKWQRTERNP----S--GKATAN------ 815 (1134)
Q Consensus 757 ~~~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~~~~----d--g~v~vw~~~~~~~~~----~--~~~~~~------ 815 (1134)
.......- .-..++..+++..+ +|....++--.+ + .+..+..-..++..| . |..+..
T Consensus 462 ~~~g~~~~~~dad~~~g~sS~~s~~--~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~ 539 (1012)
T KOG1445|consen 462 KENGVHTPNADADSTQGNSSPISTI--SPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPL 539 (1012)
T ss_pred cccCccCCCcccccccCCCCCcccc--CCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccccc
Confidence 00000000 00000001111000 000000000000 0 000000000000001 0 000000
Q ss_pred -c----------CcccccCCCCCccccc-----cCCCCCCCCceEEEEeccCCCEEEEE---eCCeEEEEECCCC-eEEE
Q 001160 816 -V----------APQLWQPPSGTLMTND-----INESKPTEESAACIALSKNDSYVMSA---SGGKVSLFNMMTF-KVMT 875 (1134)
Q Consensus 816 -~----------~~~~w~~~~~~~~~~~-----~~~~~h~~~~i~~~~~s~dg~~la~~---sdg~i~vwd~~~~-~~~~ 875 (1134)
. .+.-+.-..|+..... +....- .-+-.+--|..+.+++|+- +.|.|.||++..- ++.-
T Consensus 540 s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~-~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPD 618 (1012)
T KOG1445|consen 540 SQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNT-RLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPD 618 (1012)
T ss_pred cccccccceeeccchheeeccCccccchhhhhhhhcccc-cCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCc
Confidence 0 0000000111110000 000000 1111233455566777753 3789999999752 2211
Q ss_pred -EecC--CCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc-------eEEEEecCcccceEEEEEecC-CCEEEEEcC
Q 001160 876 -MFMS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-------EVKTKLKGHQNRITGLAFSPT-LNALVSSGA 944 (1134)
Q Consensus 876 -~~~~--~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~-------~~~~~l~~h~~~i~~l~~s~d-~~~l~s~~~ 944 (1134)
.+.+ ....|+.+.|.|.|...||++++||.|++|.+..+ +.-..+.+|...|+++.|+|- ...|++++.
T Consensus 619 gv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy 698 (1012)
T KOG1445|consen 619 GVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASY 698 (1012)
T ss_pred ccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhc
Confidence 1111 34569999999999999999999999999998754 345678999999999999994 568999999
Q ss_pred CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeCCCcceeccCCCCCCCCCeEEE
Q 001160 945 DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSA 1023 (1134)
Q Consensus 945 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v 1023 (1134)
|.+|++||+.+++. ...+.+|. +.|..++|||||+++|+ |.|++|+||+........+.........--.+
T Consensus 699 d~Ti~lWDl~~~~~-----~~~l~gHt---dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi 770 (1012)
T KOG1445|consen 699 DSTIELWDLANAKL-----YSRLVGHT---DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARI 770 (1012)
T ss_pred cceeeeeehhhhhh-----hheeccCc---CceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeE
Confidence 99999999999773 33456777 68999999999999999 89999999999444433333322223455677
Q ss_pred EEccCCCEEEEEecCC----cEEEEeCCCcc--eeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEE
Q 001160 1024 IYSCDGLLVYAGFCDG----AIGVFDAETLR--FRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVV 1097 (1134)
Q Consensus 1024 ~~s~dg~~l~~~~~dg----~I~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW 1097 (1134)
.|.-||+++++.+.|+ .|.+||..+-. .+.+.... ..-.++--.|+++.+-++++|-.|..|.+|
T Consensus 771 ~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD---------vaps~LvP~YD~Ds~~lfltGKGD~~v~~y 841 (1012)
T KOG1445|consen 771 LWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLD---------VAPSPLVPHYDYDSNVLFLTGKGDRFVNMY 841 (1012)
T ss_pred EEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeec---------ccCccccccccCCCceEEEecCCCceEEEE
Confidence 8889999999888775 48889887632 23222211 112333445666566788899999999999
Q ss_pred ecCCCcc
Q 001160 1098 EPSDAEL 1104 (1134)
Q Consensus 1098 ~~~~~~~ 1104 (1134)
++...+.
T Consensus 842 Ev~~esP 848 (1012)
T KOG1445|consen 842 EVIYESP 848 (1012)
T ss_pred EecCCCc
Confidence 9986664
No 70
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=6e-29 Score=247.38 Aligned_cols=290 Identities=18% Similarity=0.338 Sum_probs=241.4
Q ss_pred ccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEE
Q 001160 335 LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1134)
Q Consensus 335 ~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i 414 (1134)
.+.++...+.|.+.|.++... ++ .+.+|++||.++|||..... ..+ +.||.++|.++
T Consensus 94 ~aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~Gk~-~~~-------------------~~Ght~~ik~v 150 (423)
T KOG0313|consen 94 TAPKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLKGKS-IKT-------------------IVGHTGPIKSV 150 (423)
T ss_pred CCCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecCCce-EEE-------------------EecCCcceeee
Confidence 456677778899999999998 44 56799999999999987543 322 67999999998
Q ss_pred EEcCCCC---EEEEEeCCCeEEEEEcCCCCcc-ceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC----
Q 001160 415 VWGPDGL---MLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---- 486 (1134)
Q Consensus 415 ~~spdg~---~las~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~---- 486 (1134)
+|--... .+++++.|.++++|.++.++.. .......||...|.++...++|. .+++|+.|.+|.||+..+
T Consensus 151 ~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~ 228 (423)
T KOG0313|consen 151 AWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEED 228 (423)
T ss_pred EEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccc
Confidence 8854333 5999999999999999887643 22223449999999999999999 899999999999999321
Q ss_pred ---------------------CeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEE
Q 001160 487 ---------------------GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCT 545 (1134)
Q Consensus 487 ---------------------~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~ 545 (1134)
+.++-++.||..+|.++.|++. ..+++++.|.+|+.||+.+++....+.. ...+.
T Consensus 229 ~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~---~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~ 304 (423)
T KOG0313|consen 229 ELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA---TVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLN 304 (423)
T ss_pred cccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC---CceEeecccceEEEEEeecccceeeeec-Cccee
Confidence 1245678899999999999873 6899999999999999999988877654 45789
Q ss_pred EEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe---eEEEecCccCcceEEEEEeCCCC-EEEEEeCCCeEEEEECCCCe
Q 001160 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNMN 621 (1134)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 621 (1134)
++..+|..++|++++. +..+++||.+++. ...+|.+|.. .|.++.|+|... .|++++.|+++++||+++.+
T Consensus 305 ~i~~~~~~~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 305 CISYSPLSKLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred EeecccccceeeecCC----CCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 9999999999999986 7789999999753 5678899988 999999999875 46779999999999999877
Q ss_pred -eEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 622 -MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 622 -~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
++..+..|. ..|.++.|+. +..+++|+.|++|+|+.-
T Consensus 380 ~plydI~~h~--DKvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 380 APLYDIAGHN--DKVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CcceeeccCC--ceEEEEeccC-CceEEeccCcceEEEecc
Confidence 888888774 4799999975 668999999999999864
No 71
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=8e-30 Score=238.67 Aligned_cols=297 Identities=16% Similarity=0.220 Sum_probs=249.6
Q ss_pred CCcccccceEEEEEe---cCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCce
Q 001160 767 PDSIAASKVVRLIYT---NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESA 843 (1134)
Q Consensus 767 ~~~~~~~~v~~~~~s---~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i 843 (1134)
..++|..+|..++|| |+|-.|++++.|+.-. +.+-++|.-+.. +.+ | .+.|
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pm----------------------lr~g~tgdwigt-feg--h-kgav 62 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPM----------------------LRNGDTGDWIGT-FEG--H-KGAV 62 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCch----------------------hccCCCCCcEEe-eec--c-Ccce
Confidence 336799999999998 6899999999987533 334455555543 444 8 9999
Q ss_pred EEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce-EEEEec
Q 001160 844 ACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-VKTKLK 921 (1134)
Q Consensus 844 ~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~-~~~~l~ 921 (1134)
++.++..+....|+++ |-+.+|||.-+|..+..|. |..-|.+++|+. |.++|++|+.+..+||||++.-+ +...+.
T Consensus 63 w~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ 140 (334)
T KOG0278|consen 63 WSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEIS 140 (334)
T ss_pred eeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhc
Confidence 9999999999999998 9999999999999999998 888899999999 89999999999999999998654 456789
Q ss_pred CcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEe
Q 001160 922 GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD 1001 (1134)
Q Consensus 922 ~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd 1001 (1134)
+|.+.|..+.|....+.++|...|++||+||..++...+..... ..|+++..++||++|.++..+.|.+||
T Consensus 141 ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~---------s~VtSlEvs~dG~ilTia~gssV~Fwd 211 (334)
T KOG0278|consen 141 GHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN---------SPVTSLEVSQDGRILTIAYGSSVKFWD 211 (334)
T ss_pred CCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC---------CCCcceeeccCCCEEEEecCceeEEec
Confidence 99999999999988888999899999999999999865433222 468999999999999999999999999
Q ss_pred C-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCC
Q 001160 1002 S-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPS 1080 (1134)
Q Consensus 1002 ~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1080 (1134)
. ....++.+.. ...|.+...+|+...+++|++|..++.||..+|+.+..... +|-.-+.|+.|+|
T Consensus 212 aksf~~lKs~k~----P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nk---------gh~gpVhcVrFSP- 277 (334)
T KOG0278|consen 212 AKSFGLLKSYKM----PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNK---------GHFGPVHCVRFSP- 277 (334)
T ss_pred cccccceeeccC----ccccccccccCCCceEEecCcceEEEEEeccCCceeeeccc---------CCCCceEEEEECC-
Confidence 9 7777776654 56899999999999999999999999999999999876421 2335566999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCc--cccCCCCCCCC
Q 001160 1081 EPNQIALGMSDGAVHVVEPSDAE--LKWGGTPSQDN 1114 (1134)
Q Consensus 1081 d~~~l~s~~~Dg~v~vW~~~~~~--~~~~~~~~~~~ 1114 (1134)
||...++||.||+|++|.+.-++ ..|.--.|.+.
T Consensus 278 dGE~yAsGSEDGTirlWQt~~~~~~~~~~~~~~ed~ 313 (334)
T KOG0278|consen 278 DGELYASGSEDGTIRLWQTTPGKTYGLWKCVKPEDD 313 (334)
T ss_pred CCceeeccCCCceEEEEEecCCCchhhccccChhhh
Confidence 89999999999999999987666 34555555533
No 72
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=9.5e-30 Score=255.71 Aligned_cols=294 Identities=17% Similarity=0.219 Sum_probs=252.2
Q ss_pred ccccceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCe
Q 001160 333 DDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 411 (1134)
Q Consensus 333 ~~~~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 411 (1134)
+..|......+. |.+.|..+.|-++.. .|++|+.|..|++|++..++.-.. ..|.|..+.|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCCc
Confidence 445555566666 889999999999976 589999999999999987662211 1267888999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeE
Q 001160 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1134)
Q Consensus 412 ~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~ 491 (1134)
+.+.|.++++++++++.|+.+++|+++..+... +|.||.+.|+++.|..... .+++|+.|.+|++||+..+.|.+
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999987665 8889999999999988776 59999999999999999998887
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEE
Q 001160 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1134)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1134)
++- ....+..|+..+ ..+++|-.|++|++||+++.......+.++ .|+++..++++..+++++. |.++.+
T Consensus 298 t~l-~~S~cnDI~~~~----~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v 367 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCSI----SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV 367 (459)
T ss_pred ccc-ccccccceEecc----eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence 754 334455565532 678999999999999999999888888766 9999999999999999975 778999
Q ss_pred EeCCCCeeEEEecCcc---CcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEE
Q 001160 572 WNESEGAIKRTYSGFR---KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1134)
Q Consensus 572 wd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 648 (1134)
.|+++.+....+.... ....+.+.|||++.|+++||.||.|+||++.++++...+........|++++|+|.|..++
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 9999999888876542 2247789999999999999999999999999999999998776655799999999999999
Q ss_pred EEeCCCcEEEE
Q 001160 649 VTTSDNGIKIL 659 (1134)
Q Consensus 649 ~~~~dg~i~iw 659 (1134)
+++.++.+.+|
T Consensus 448 sadk~~~v~lW 458 (459)
T KOG0288|consen 448 SADKQKAVTLW 458 (459)
T ss_pred cccCCcceEec
Confidence 99999999999
No 73
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.7e-28 Score=277.78 Aligned_cols=306 Identities=17% Similarity=0.260 Sum_probs=251.4
Q ss_pred CCCCeeEEEEecCCCeEEEEEe--CCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
++..|.+++.+|||. .+|+|+ .||.++||+.+.--... ..++.. .+........|.+.|+|+.|||||++
T Consensus 12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~----~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEK----EEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCce-eEecCCccccccceeeccccccchh----hhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 356799999999998 689999 89999999976321100 011111 12222335679999999999999999
Q ss_pred EEEEeCCCeEEEEEcCC----------C-----CccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001160 423 LGVAFSKHIVHLYTYNP----------T-----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~----------~-----~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~ 487 (1134)
||+|+.|+.|.||.... | +..+....+.+|...|..++|+|++. ++++++.|++|.|||..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999873 0 11335567889999999999999999 9999999999999999999
Q ss_pred eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC------CCcEEEEEECCCCCEEEEEee
Q 001160 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------GNWCTMMAYSADGTRLFSCGT 561 (1134)
Q Consensus 488 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~ 561 (1134)
+.+..+.+|.+.|..+.|.|.+ ++|++-+.|++|++|++.+-+....+..+ ...+..+.|||||++|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP~G--ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDPIG--KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECCcc--CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 9999999999999999998866 99999999999999997775555544433 336789999999999998876
Q ss_pred CCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCC--------C-----C----EEEEEeCCCeEEEEECCCCeeEE
Q 001160 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT--------R-----N----RFLAAGDEFQIKFWDMDNMNMLT 624 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~--------~-----~----~l~~~~~dg~i~iwd~~~~~~~~ 624 (1134)
-+.+...+.|.+-.+.+.-..+-||.. ++.++.|+|. | + .+++|+.|++|.||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 666678899999988898999999998 9999999972 1 1 46679999999999998888776
Q ss_pred EEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.+..-. ...|..++|+|||..|++++.||+|.++.++..
T Consensus 319 vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 664332 247999999999999999999999999998754
No 74
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.4e-27 Score=226.36 Aligned_cols=286 Identities=12% Similarity=0.149 Sum_probs=240.1
Q ss_pred ecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCE
Q 001160 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 343 l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
..|+.+++.+.|+.+|. ||++++.|.++.||-..+|+.+-+ +.||.+.|+|++...+.++
T Consensus 7 ~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s~~ 66 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDSKH 66 (327)
T ss_pred ccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCcce
Confidence 34999999999999998 899999999999999999998876 7899999999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEc-----CCCcEEEEECC-------CCeee
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-----DDKMIKVWDVV-------AGRKQ 490 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~-----~d~~i~iwd~~-------~~~~~ 490 (1134)
+++|+.|.++++||+++|+++. .+. ...+|..+.|+++|. +++.+. ..+.|.++|++ ..++.
T Consensus 67 liTGSAD~t~kLWDv~tGk~la---~~k-~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~ 140 (327)
T KOG0643|consen 67 LITGSADQTAKLWDVETGKQLA---TWK-TNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPY 140 (327)
T ss_pred eeeccccceeEEEEcCCCcEEE---Eee-cCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcccCce
Confidence 9999999999999999998776 332 467899999999998 444443 35689999998 45567
Q ss_pred EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCcee-EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcE
Q 001160 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1134)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1134)
..+..+...++.+-|.|.+ ++|++|..||.|..||++++.... ....|...|+.+.+++|..++++++. |.+-
T Consensus 141 ~kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dtta 214 (327)
T KOG0643|consen 141 LKIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DTTA 214 (327)
T ss_pred EEecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cccc
Confidence 8888899999999998876 899999999999999999976655 55778889999999999999999974 7789
Q ss_pred EEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCe--EE------------EEECCCCeeEEEEeCCCCCCCc
Q 001160 570 VEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ--IK------------FWDMDNMNMLTTVDADGGLPAS 635 (1134)
Q Consensus 570 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--i~------------iwd~~~~~~~~~~~~~~~~~~v 635 (1134)
++||..+-+.++++.... +|++.+++|-...++.||.-.. |. +|++-..+.+..+.+| ..+|
T Consensus 215 kl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH--FGPI 290 (327)
T KOG0643|consen 215 KLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH--FGPI 290 (327)
T ss_pred eeeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc--ccCc
Confidence 999999999999998765 8999999999888888663221 21 2222222344455555 5699
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 636 ~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
++++|+|+|+..++|+.||.||+.-....
T Consensus 291 NsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 291 NSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ceeEECCCCcccccCCCCceEEEEEeccc
Confidence 99999999999999999999999876543
No 75
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=6.2e-27 Score=222.00 Aligned_cols=237 Identities=14% Similarity=0.211 Sum_probs=205.5
Q ss_pred ccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEE
Q 001160 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iw 482 (1134)
.+.||+.+++.+.++.+|.+|.+|+.|.++.+|-...|+.+. ++.||.+.|+|++..-+.+ +++||+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 378999999999999999999999999999999998888766 8899999999999999999 89999999999999
Q ss_pred ECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEec-----CCeEEEEEcc-------CCCceeEecCCCCcEEEEEEC
Q 001160 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-----DGKIKAWLYD-------YLGSRVDYDAPGNWCTMMAYS 550 (1134)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-----d~~i~~wd~~-------~~~~~~~~~~~~~~v~~~~~s 550 (1134)
|+++|+++..++ ...+|..+.|++.+ .+++.... .+.|.++|++ ..++...+..+...++.+-|.
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999987 66789999998765 55555433 4679999998 344566777788999999999
Q ss_pred CCCCEEEEEeeCCCCCCcEEEEeCCCCe-eEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC
Q 001160 551 ADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1134)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1134)
|-+++|++|.. ++.|.+||.++|+ .+..-+.|.. .|+.+++++|..++++++.|.+-++||..+-+.++++...
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEeeec
Confidence 99999999974 8889999999985 4555566666 8999999999999999999999999999999999998754
Q ss_pred CCCCCcceEEEccCCCEEEEEeCCCc
Q 001160 630 GGLPASPRLRFNKEGSLLAVTTSDNG 655 (1134)
Q Consensus 630 ~~~~~v~~~~~s~d~~~l~~~~~dg~ 655 (1134)
.+|++.+++|-...++.|+....
T Consensus 232 ---~PvN~aaisP~~d~VilgGGqeA 254 (327)
T KOG0643|consen 232 ---RPVNTAAISPLLDHVILGGGQEA 254 (327)
T ss_pred ---ccccceecccccceEEecCCcee
Confidence 47999999998777777765433
No 76
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1e-26 Score=263.17 Aligned_cols=288 Identities=14% Similarity=0.113 Sum_probs=224.4
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC-CCCEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLG 424 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp-dg~~la 424 (1134)
-..|....+++|+.. +++++.+..+..|+...+..+. +.............+.+|.+.|.+++|+| ++++||
T Consensus 20 ~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~La 92 (493)
T PTZ00421 20 FLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLF 92 (493)
T ss_pred eeccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEE
Confidence 346777788888764 4556767788888876654221 11111111112234789999999999999 899999
Q ss_pred EEeCCCeEEEEEcCCCCc----cceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCe
Q 001160 425 VAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v 500 (1134)
+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++|+.|++|+|||+.+++.+..+.+|...|
T Consensus 93 SgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V 171 (493)
T PTZ00421 93 TASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQI 171 (493)
T ss_pred EEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCce
Confidence 999999999999987532 1234478899999999999998644 89999999999999999999999999999999
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCc-EEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe-
Q 001160 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW-CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA- 578 (1134)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~- 578 (1134)
.+++|++++ .+|++++.|++|++||+++++....+..|.+. +..+.|.+++..+++++.++..++.|++||+++..
T Consensus 172 ~sla~spdG--~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 172 TSLEWNLDG--SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EEEEEECCC--CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 999998854 89999999999999999998888788777653 45788999999998877655568899999998754
Q ss_pred eEEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCC
Q 001160 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1134)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 644 (1134)
++.....+....+....|+++++.+++++ .|+.|++||+.+++++....... ..++..++|.|.-
T Consensus 250 p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk~ 315 (493)
T PTZ00421 250 PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPKW 315 (493)
T ss_pred ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEecccc
Confidence 44444444443566678999999999887 59999999999998877765432 3467888888853
No 77
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.4e-27 Score=230.61 Aligned_cols=313 Identities=17% Similarity=0.214 Sum_probs=245.4
Q ss_pred cceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccc-cccceeeccccccccccccccccCCcCeEEE
Q 001160 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA-HKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1134)
Q Consensus 336 ~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i 414 (1134)
.++-.....|+.++.+.+|||||. ++|+|+.|-.|+|.|++..-... -+.+..-+..... +. ...+..|.+.|+++
T Consensus 102 ~yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~h-Pv-IRTlYDH~devn~l 178 (430)
T KOG0640|consen 102 EYETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARH-PV-IRTLYDHVDEVNDL 178 (430)
T ss_pred ccceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCC-ce-EeehhhccCcccce
Confidence 344555556999999999999997 89999999999999997321100 0000011111111 11 12367899999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe-
Q 001160 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF- 493 (1134)
Q Consensus 415 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~- 493 (1134)
.|+|....|++|+.|++|+++|+......+....++ ...+|.++.|.|.|. +|+.|.+-.++++||+++-++...-
T Consensus 179 ~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~Qcfvsan 255 (430)
T KOG0640|consen 179 DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSAN 255 (430)
T ss_pred eecchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecC
Confidence 999999999999999999999998765544333333 456899999999999 8999999999999999998876543
Q ss_pred --cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec-CC-CCcEEEEEECCCCCEEEEEeeCCCCCCcE
Q 001160 494 --EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-AP-GNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1134)
Q Consensus 494 --~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1134)
..|.+.|+++.+++.+ .+.++++.||.|++||--+.+++..+. .| +..|.+..|+.+|+++++.+. |..+
T Consensus 256 Pd~qht~ai~~V~Ys~t~--~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~v 329 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSSTG--SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTV 329 (430)
T ss_pred cccccccceeEEEecCCc--cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----ccee
Confidence 3589999999997765 899999999999999988888877654 34 448999999999999999874 8899
Q ss_pred EEEeCCCCeeEEEecCccCc----ceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCC
Q 001160 570 VEWNESEGAIKRTYSGFRKR----SLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1134)
Q Consensus 570 ~~wd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 644 (1134)
++|.+.+++++..+.|.... --+...|+....+++.-. ..+.+.-||.+++..+..+.. ++...+..+.-||.+
T Consensus 330 kLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~ 408 (430)
T KOG0640|consen 330 KLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVE 408 (430)
T ss_pred eeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCC
Confidence 99999999999999876211 122345777778877754 567899999999887766643 455688999999999
Q ss_pred CEEEEEeCCCcEEEEEC
Q 001160 645 SLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 645 ~~l~~~~~dg~i~iw~~ 661 (1134)
.-+.+++.|..+|+|--
T Consensus 409 p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 409 PAFMTCSDDFRARFWYR 425 (430)
T ss_pred Cceeeecccceeeeeee
Confidence 99999999999999963
No 78
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.9e-27 Score=245.01 Aligned_cols=283 Identities=17% Similarity=0.252 Sum_probs=232.9
Q ss_pred cccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc
Q 001160 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1134)
..+.|.+++|+|...+=++..+.-.+.+|+..+ -........ . ...++++.|-.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~----------------------~~~~k~~sr---F-k~~v~s~~fR~ 78 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVT----------------------RSVRKTFSR---F-KDVVYSVDFRS 78 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecch----------------------hhhhhhHHh---h-ccceeEEEeec
Confidence 457899999999776666666666788886532 111111111 2 77899999999
Q ss_pred CCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEE
Q 001160 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 929 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~ 929 (1134)
||+++|+|+ .|.|+|||+.+...++.+.+|..++..+.|+|+++.++++|++|+.+++||+.+......+.+|.+.|.+
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 999999999 7999999988877888899999999999999999999999999999999999999887789999999999
Q ss_pred EEEecC-CCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCC-Ccce
Q 001160 930 LAFSPT-LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSK-LECS 1007 (1134)
Q Consensus 930 l~~s~d-~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~-~~~~ 1007 (1134)
.+|+|- +.+++|||.||+|++||..... ......-.| .+|..+.|-|.|..+|+++...|+|||+. +...
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL 230 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence 999996 5589999999999999998753 223333333 35899999999999999999999999994 5554
Q ss_pred eccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEE
Q 001160 1008 RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIAL 1087 (1134)
Q Consensus 1008 ~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s 1087 (1134)
..... .|...|+|+++..|++.|++|+-|+.|++||+.+.+.+..+... ..+++++-+| |+..++.
T Consensus 231 l~~~~--~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~-----------~pvLsiavs~-dd~t~vi 296 (487)
T KOG0310|consen 231 LTSMF--NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP-----------GPVLSIAVSP-DDQTVVI 296 (487)
T ss_pred hhhhh--cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc-----------cceeeEEecC-CCceEEE
Confidence 33322 27899999999999999999999999999999998888887643 5567888888 6689999
Q ss_pred EeCCCcEEEEecCC
Q 001160 1088 GMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1088 ~~~Dg~v~vW~~~~ 1101 (1134)
|..||.+.+=+...
T Consensus 297 GmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 297 GMSNGLVSIRRREV 310 (487)
T ss_pred ecccceeeeehhhc
Confidence 99999887765443
No 79
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.6e-26 Score=223.10 Aligned_cols=281 Identities=14% Similarity=0.229 Sum_probs=232.5
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
.+.|+++.|+++|. ++++++.|.+++|||..+++.+.+ +..++..|..+.|......++.
T Consensus 14 ~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~i~ 73 (311)
T KOG1446|consen 14 NGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTVIH 73 (311)
T ss_pred CCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceEEE
Confidence 57899999999998 566788899999999999988765 4557778999999888887777
Q ss_pred EeC--CCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEE
Q 001160 426 AFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1134)
Q Consensus 426 ~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1134)
++. |.+|+..++.+.+.++ .+.||...|.+++.+|-++ .+++++.|++|++||++..++...+.....+ .+
T Consensus 74 sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~ 146 (311)
T KOG1446|consen 74 SSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IA 146 (311)
T ss_pred ccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCc--ce
Confidence 766 8899999999998777 8899999999999999998 8999999999999999988887766544444 35
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCC--ceeEecC---CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe
Q 001160 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDA---PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1134)
+|.|. |-++|++.....|++||++.-. +...+.. .....+.+.|||||++++.+.. .+.+++.|.-+|.
T Consensus 147 AfDp~--GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 147 AFDPE--GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDGT 220 (311)
T ss_pred eECCC--CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCCc
Confidence 66554 4788888888899999998752 2333333 3568899999999999998864 7789999999999
Q ss_pred eEEEecCccCcc--eEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcE
Q 001160 579 IKRTYSGFRKRS--LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1134)
Q Consensus 579 ~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i 656 (1134)
.+.++.++.... -...+|+||++++++|+.||+|.+|++++++.+..+.+. ...++.++.|+|.-.++++++. .+
T Consensus 221 ~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~s--~l 297 (311)
T KOG1446|consen 221 VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSASS--NL 297 (311)
T ss_pred EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecCc--eE
Confidence 999998876532 245779999999999999999999999999999999875 3457899999998777776654 67
Q ss_pred EEEECC
Q 001160 657 KILANS 662 (1134)
Q Consensus 657 ~iw~~~ 662 (1134)
.+|=..
T Consensus 298 ~fw~p~ 303 (311)
T KOG1446|consen 298 VFWLPD 303 (311)
T ss_pred EEEecc
Confidence 788654
No 80
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=263.76 Aligned_cols=300 Identities=15% Similarity=0.198 Sum_probs=217.4
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC---CCC
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP---DGL 421 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp---dg~ 421 (1134)
|.+.|+++.||+||+ +||+|+.||.|+||.+...+...... -+.. ..... + .-.+.+.-+.-++ .++
T Consensus 266 h~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~---~~~~---~~~~~--~-~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAE---GDSS---CMYFE--Y-NANSQIEPSTSSEEKISSR 335 (712)
T ss_pred cCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccc---cccc---hhhhh--h-hhccccCcccccccccccc
Confidence 899999999999998 79999999999999998744321100 0000 00000 0 0000011111111 011
Q ss_pred --EEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCC
Q 001160 422 --MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1134)
Q Consensus 422 --~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1134)
..-.+.....+.+-+..-.=.-.++..+.||.+.|.++.||.++ +|++++.|++|++|++....+++.|. |...
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-Hndf 411 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HNDF 411 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCCe
Confidence 11111122221111111100112344788999999999999887 79999999999999999999999996 9999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee
Q 001160 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (1134)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1134)
|+|++|+|.+| .++++|+.|+.||||++...+... ...-..-|++++|.|||++.+.|+. +|.+++|+....+.
T Consensus 412 VTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdGk~avIGt~----~G~C~fY~t~~lk~ 485 (712)
T KOG0283|consen 412 VTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVD-WNDLRDLITAVCYSPDGKGAVIGTF----NGYCRFYDTEGLKL 485 (712)
T ss_pred eEEEEecccCC-CcEeecccccceEEeecCcCeeEe-ehhhhhhheeEEeccCCceEEEEEe----ccEEEEEEccCCeE
Confidence 99999999876 899999999999999998654443 3333478999999999999999987 77899999998777
Q ss_pred EEEecCcc-------CcceEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEe
Q 001160 580 KRTYSGFR-------KRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1134)
Q Consensus 580 ~~~~~~~~-------~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 651 (1134)
...+..+. ...|+.+.|.|.. ..+++.+.|..|||+|.++..++..+.+......-....|+.||++|++++
T Consensus 486 ~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 486 VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred EEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee
Confidence 66554321 1269999999755 458888899999999999999998888765555556789999999999999
Q ss_pred CCCcEEEEECCCc
Q 001160 652 SDNGIKILANSDG 664 (1134)
Q Consensus 652 ~dg~i~iw~~~~~ 664 (1134)
.|..|++|+....
T Consensus 566 eDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 566 EDSWVYIWKNDSF 578 (712)
T ss_pred cCceEEEEeCCCC
Confidence 9999999998543
No 81
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=7.3e-27 Score=225.72 Aligned_cols=274 Identities=18% Similarity=0.253 Sum_probs=222.4
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCc-cccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR-ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~l 423 (1134)
.++.|.+++|||....++++||-||+|++|+++.. .... .....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 46799999999966668889999999999999874 3221 1245699999999999999999
Q ss_pred EEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEE
Q 001160 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1134)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1134)
++|+.|+.+++||+.+++.. .+..|.++|.++.|-+....-.|+|||.|++|+.||.+...++.++. -...+.++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998543 56789999999999876654489999999999999999999988876 55677777
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCceeE-e-cCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC--ee
Q 001160 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-Y-DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AI 579 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~ 579 (1134)
..-. .+++.+..++.|.+|+++++..... . ..-.-.+.|++..+|....+.|+. +|.+.+..+..+ +.
T Consensus 163 Dv~~----pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DVLY----PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hccC----ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 6532 6889999999999999977554332 1 223347889999998888888876 677877777765 55
Q ss_pred EEEecCccC--------cceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEe
Q 001160 580 KRTYSGFRK--------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1134)
Q Consensus 580 ~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 651 (1134)
-.+|+.|.. -.|++++|+|....|+++|.||++.+||-+....+.+.+.+. .+|++.+|+.+|.++|.+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~--qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHP--QPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCC--CccceeEecCCCCEEEEEe
Confidence 556777763 247789999999999999999999999998877777766553 4899999999999988664
No 82
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.6e-26 Score=223.81 Aligned_cols=259 Identities=17% Similarity=0.232 Sum_probs=215.6
Q ss_pred CCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeC--CCcEEEEEcCCceE
Q 001160 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME--DSSVQIYNVRVDEV 916 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~--dg~i~iwd~~~~~~ 916 (1134)
...|.++.|+++|.++++++ |..+++||..+++.++++..+.-.+..+.|.. ....+..++. |.+|+..++.+.+.
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEEEeecCce
Confidence 67899999999999999988 88999999999999999998888899999987 4555555665 88999999999999
Q ss_pred EEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECC-
Q 001160 917 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES- 995 (1134)
Q Consensus 917 ~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~- 995 (1134)
++.|.||...|.+|+.+|-+..++|++.|++|++||+...+++-...+ ..-..+||.|.|-++|++.++
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~----------~~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL----------SGRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec----------CCCcceeECCCCcEEEEecCCC
Confidence 999999999999999999999999999999999999997665432111 123578999999999997554
Q ss_pred eEEEEeC---CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCcc
Q 001160 996 QISVYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHP 1072 (1134)
Q Consensus 996 ~v~vwd~---~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1134)
.|++||+ ...-...+....+-..+.+.|.|||||++++.++..+.+++.|.-+|..+..+.... .....+
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~-------~~~~~~ 235 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP-------NAGNLP 235 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc-------CCCCcc
Confidence 9999999 233334444444447899999999999999999999999999999999988887553 222455
Q ss_pred EEEeecCCCCCEEEEEeCCCcEEEEecCCCccccCCCCCCCCCCCC
Q 001160 1073 LVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLP 1118 (1134)
Q Consensus 1073 ~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~~~~~~~~~ 1118 (1134)
+.++|+| |++++++|+.||+|++|++.+++.......| ++|+.+
T Consensus 236 ~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~ 279 (311)
T KOG1446|consen 236 LSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVS 279 (311)
T ss_pred eeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCcc
Confidence 8899999 8999999999999999999999966655554 455444
No 83
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.6e-26 Score=217.23 Aligned_cols=274 Identities=14% Similarity=0.216 Sum_probs=236.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC-CCCEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp-dg~~l 423 (1134)
|...|.+|+|+-+|. -||+|+.|+++.+|++......... ...+|.+.|-.++|+| ....+
T Consensus 19 ~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~~-----------------~~~gh~~svdql~w~~~~~d~~ 80 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKEL-----------------VYRGHTDSVDQLCWDPKHPDLF 80 (313)
T ss_pred hhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhhh-----------------cccCCCcchhhheeCCCCCcce
Confidence 677999999999998 5899999999999999987544321 2568999999999998 56799
Q ss_pred EEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEE
Q 001160 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1134)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1134)
++++.|.+|++||+..+++.... . ..+.=..+.|+|+|+ +++.++.|..|.+.|.++.+.+...+ ....+.-+
T Consensus 81 atas~dk~ir~wd~r~~k~~~~i---~-~~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~ 153 (313)
T KOG1407|consen 81 ATASGDKTIRIWDIRSGKCTARI---E-TKGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEI 153 (313)
T ss_pred EEecCCceEEEEEeccCcEEEEe---e-ccCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceeeee
Confidence 99999999999999999877632 2 233344689999999 89999999999999999888776554 45567788
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEe
Q 001160 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1134)
+|+.++ ++++....-|+|.|......+.+..+..|.....|+.|+|+|+++++|+. |..+.+||+...-+++.+
T Consensus 154 ~w~~~n--d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 154 SWNNSN--DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICERCI 227 (313)
T ss_pred eecCCC--CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhheee
Confidence 887544 67777788899999999999999999999999999999999999999986 778999999999899999
Q ss_pred cCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCC
Q 001160 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1134)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 653 (1134)
..+.- +|+.++|+.+|++|++|++|..|-|=++++|..+..++..+ +...++|+|...+||.+.+|
T Consensus 228 sRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 228 SRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence 88776 99999999999999999999999999999999999998654 56899999999999988775
No 84
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2e-26 Score=218.01 Aligned_cols=276 Identities=14% Similarity=0.226 Sum_probs=234.6
Q ss_pred EEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeE--EecCCCCCeEEEEeeccCCccEEEEEecCCeEEE
Q 001160 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1134)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~ 525 (1134)
.+++|...|.+++|+.+|. .+++|+.|+++.+|++...+... ...+|.+.|-.++|+|..+ ..+++++.|++|++
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRI 91 (313)
T ss_pred HhhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEE
Confidence 5678999999999999999 89999999999999998876554 4568999999999998765 79999999999999
Q ss_pred EEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEE
Q 001160 526 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA 605 (1134)
Q Consensus 526 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 605 (1134)
||++..++..........+ .++|+|+|.+++++.. +..|...|.++.+.+...+... .++-++|+.++..++.
T Consensus 92 wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~k----dD~it~id~r~~~~~~~~~~~~--e~ne~~w~~~nd~Ffl 164 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNK----DDRITFIDARTYKIVNEEQFKF--EVNEISWNNSNDLFFL 164 (313)
T ss_pred EEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecC----cccEEEEEecccceeehhcccc--eeeeeeecCCCCEEEE
Confidence 9999999988777665555 5789999999999864 6679999999988877766544 5777889988888888
Q ss_pred EeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCC
Q 001160 606 AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEP 685 (1134)
Q Consensus 606 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1134)
....|.|.|.....-+++..+..|. ....|+.|+|+|+++|+|+.|..+.+||+... -+.+.+
T Consensus 165 t~GlG~v~ILsypsLkpv~si~AH~--snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~i-------------- 227 (313)
T KOG1407|consen 165 TNGLGCVEILSYPSLKPVQSIKAHP--SNCICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCI-------------- 227 (313)
T ss_pred ecCCceEEEEeccccccccccccCC--cceEEEEECCCCceEeeccccceeeccChhHh-hhheee--------------
Confidence 7788999999999999999999875 46789999999999999999999999998643 111000
Q ss_pred CCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEee
Q 001160 686 ISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALR 765 (1134)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~ 765 (1134)
T Consensus 228 -------------------------------------------------------------------------------- 227 (313)
T KOG1407|consen 228 -------------------------------------------------------------------------------- 227 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEE
Q 001160 766 LPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 845 (1134)
Q Consensus 766 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~ 845 (1134)
. ++ ..+|+.
T Consensus 228 --------------------------------------------------------------------s--Rl-dwpVRT 236 (313)
T KOG1407|consen 228 --------------------------------------------------------------------S--RL-DWPVRT 236 (313)
T ss_pred --------------------------------------------------------------------c--cc-cCceEE
Confidence 0 03 778899
Q ss_pred EEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCC
Q 001160 846 IALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED 903 (1134)
Q Consensus 846 ~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d 903 (1134)
+.||.||++||+|+ |..|-|=++++|..+..++ +.++...++|+| ...+||.+++|
T Consensus 237 lSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~dd 293 (313)
T KOG1407|consen 237 LSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDD 293 (313)
T ss_pred EEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecC
Confidence 99999999999999 8889999999999998887 788999999999 89999998876
No 85
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.6e-27 Score=221.94 Aligned_cols=285 Identities=16% Similarity=0.242 Sum_probs=229.1
Q ss_pred eeEEEEecC--CCeEEEEEe-----CCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCC-C
Q 001160 349 VMSMDFHPQ--QQTILLVGT-----NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-G 420 (1134)
Q Consensus 349 V~~v~~spd--g~~llasg~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd-g 420 (1134)
=.++.|||- ++..+|++. ..|.+.|-++..++.+.. +..+ .-.+.+..++||++ .
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~---------------d~~D~LfdV~Wse~~e 73 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSY---------------DTEDGLFDVAWSENHE 73 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEee---------------ecccceeEeeecCCCc
Confidence 357888884 442233332 367899999875444431 1111 24567999999995 5
Q ss_pred CEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCe
Q 001160 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (1134)
Q Consensus 421 ~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v 500 (1134)
+.+++++.||++++||+... -.++..++.|...|.++.|++-.++ .+++++.|++|++|+...++.+.++.||...|
T Consensus 74 ~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~I 150 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCI 150 (311)
T ss_pred ceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEE
Confidence 67888999999999995433 2344478899999999999997776 67888999999999999999999999999999
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEE-EEEeeCCCCCCcEEEEeCCCC-e
Q 001160 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL-FSCGTSKEGESHLVEWNESEG-A 578 (1134)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~~~~~~i~~wd~~~~-~ 578 (1134)
...+|+|... +.++++|.|+++++||++.......+..|...+.++.|+.-...+ ++++ .|+.|+.||++.- .
T Consensus 151 y~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~----vd~~vr~wDir~~r~ 225 (311)
T KOG0277|consen 151 YQAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG----VDNLVRGWDIRNLRT 225 (311)
T ss_pred EEEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC----CCceEEEEehhhccc
Confidence 9999999854 799999999999999999998888899999999999999866555 4554 4888999999874 4
Q ss_pred eEEEecCccCcceEEEEEeCCC-CEEEEEeCCCeEEEEECCCCe-eEEEEeCCCCCCCcceEEEcc-CCCEEEEEeCCCc
Q 001160 579 IKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMN-MLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNG 655 (1134)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~ 655 (1134)
++..+.+|.- .|+.+.|+|.. ..|++++.|-+++|||...+. .+.+...|. .-+..+.|++ ++.++|+.+.|+.
T Consensus 226 pl~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht--EFv~g~Dws~~~~~~vAs~gWDe~ 302 (311)
T KOG0277|consen 226 PLFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT--EFVCGLDWSLFDPGQVASTGWDEL 302 (311)
T ss_pred cceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc--eEEeccccccccCceeeecccccc
Confidence 6788888877 89999999976 567889999999999998543 445555443 3678888988 7789999999999
Q ss_pred EEEEEC
Q 001160 656 IKILAN 661 (1134)
Q Consensus 656 i~iw~~ 661 (1134)
++||+.
T Consensus 303 l~Vw~p 308 (311)
T KOG0277|consen 303 LYVWNP 308 (311)
T ss_pred eeeecc
Confidence 999984
No 86
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=4.8e-27 Score=226.85 Aligned_cols=253 Identities=15% Similarity=0.272 Sum_probs=206.8
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC------------CCc---cceeeEEecccCCeeEEEEecCCCcE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP------------TGE---LRQHLEIDAHVGGVNDIAFAHPNKQL 468 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~------------~~~---~~~~~~~~~h~~~v~~l~~s~d~~~~ 468 (1134)
+..|+.++.+.+|||||.++|+|+.|..|+|.|++. +.. -..+.++..|...|+++.|.|...
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~-- 185 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET-- 185 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh--
Confidence 667999999999999999999999999999999871 111 113457778999999999999998
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEec--CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe---cCCCCc
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGNW 543 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~~~~~ 543 (1134)
.|++|+.|++|+++|.......+.++ ....+|.++.|+|.+ .+|+.|....++++||+.+.++...- ..|...
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG--efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG--EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC--ceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 99999999999999987644332222 245789999999977 89999999999999999998886644 346679
Q ss_pred EEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecC-ccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCee
Q 001160 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1134)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1134)
|+++.+++.|+..++++. ||.|++||--+++++.++.. |.+..|.+..|..+++++++.|.|..+++|.+.++++
T Consensus 264 i~~V~Ys~t~~lYvTaSk----DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASK----DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred eeEEEecCCccEEEEecc----CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 999999999999999974 88899999999999998864 5555799999999999999999999999999999999
Q ss_pred EEEEeCCCCC---CCcceEEEccCCCEEEEEeC-CCcEEEEECCCc
Q 001160 623 LTTVDADGGL---PASPRLRFNKEGSLLAVTTS-DNGIKILANSDG 664 (1134)
Q Consensus 623 ~~~~~~~~~~---~~v~~~~~s~d~~~l~~~~~-dg~i~iw~~~~~ 664 (1134)
+..+.+.+.. ..-+...|+....+++.-.. .+.+.-||.++.
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 9998765322 22244556666666665443 467777887766
No 87
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.4e-26 Score=261.50 Aligned_cols=283 Identities=17% Similarity=0.284 Sum_probs=247.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
+...+.+..|. ++ .+.+|+.|++|++||..++..+.. .+.||.+.|.++++..-+.+|+
T Consensus 207 ~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~lv 265 (537)
T KOG0274|consen 207 DDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKLV 265 (537)
T ss_pred Ccchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEEE
Confidence 56789999999 44 477899999999999999887653 2679999999999998899999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1134)
+|+.|.++++||+.+|++.. .+.+|.+.|.++...+. ++++|+.|.+|++|++.++.++..+.+|.++|.++.
T Consensus 266 sgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 266 SGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred EEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence 99999999999999998777 88899999999987543 789999999999999999999999999999999998
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC-eeEEEe
Q 001160 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTY 583 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~ 583 (1134)
.+ +.++++|+.|++|++||+.+.+++..+.+|..+|+++.+.+. ..+++++. |+.|++||++++ +++.++
T Consensus 339 ~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 339 LD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred ec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhhh
Confidence 75 379999999999999999999999999999999999988776 88999987 678999999999 999999
Q ss_pred cCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCC
Q 001160 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~ 663 (1134)
.+|.. .+..+. ..++++++++.|++|++||..+++++.++..+ +...|..+++. ...+++++.+|.+++||+.+
T Consensus 410 ~~h~~-~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 410 QGHTS-LVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred cCCcc-cccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 99987 554443 45789999999999999999999999999875 33467777665 46788999999999999999
Q ss_pred chhhhhhh
Q 001160 664 GVRLLRML 671 (1134)
Q Consensus 664 ~~~~~~~~ 671 (1134)
+ ...+.+
T Consensus 484 ~-~~~~~l 490 (537)
T KOG0274|consen 484 G-TLIRTL 490 (537)
T ss_pred C-chhhhh
Confidence 9 444433
No 88
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=2e-26 Score=229.48 Aligned_cols=282 Identities=20% Similarity=0.298 Sum_probs=235.2
Q ss_pred cccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCC-ccEEEEEecCCeEEEEEcc
Q 001160 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES-IQFIFSTAIDGKIKAWLYD 529 (1134)
Q Consensus 451 ~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~~~l~s~~~d~~i~~wd~~ 529 (1134)
-|.+.|.++.-. ++ .|+||+.||.+++|| ..|+.++.+.||.++|.+++|...++ ...|++++.|.++++|.++
T Consensus 103 ~hdDWVSsv~~~--~~--~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK--WILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred cchhhhhhhccc--Cc--eEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 488899998887 55 899999999999999 78999999999999999888765432 2469999999999999988
Q ss_pred CCCcee----EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC-------------------------CCeeE
Q 001160 530 YLGSRV----DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-------------------------EGAIK 580 (1134)
Q Consensus 530 ~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-------------------------~~~~~ 580 (1134)
.+.... ...+|...|.+++..++|..+++++. |..|.+|+.. ++.++
T Consensus 178 ~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 178 VGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred CchhhhhHHhHhcccccceeEEEecCCCCeEEeecc----cceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 765433 34589999999999999999999986 7789999921 13466
Q ss_pred EEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEE
Q 001160 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1134)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~ 660 (1134)
.++.+|.+ +|.++.|++ ...+++++.|.+|+.||+.++.....+... ....++.++|..++|++|+.|..+++||
T Consensus 254 vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~---ksl~~i~~~~~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 254 VTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN---KSLNCISYSPLSKLLASGSSDRHIRLWD 328 (423)
T ss_pred EEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC---cceeEeecccccceeeecCCCCceeecC
Confidence 77889988 999999998 678999999999999999999999888754 3679999999999999999999999999
Q ss_pred CCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCccccccccccc
Q 001160 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 740 (1134)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1134)
.+++..
T Consensus 329 PR~~~g-------------------------------------------------------------------------- 334 (423)
T KOG0313|consen 329 PRTGDG-------------------------------------------------------------------------- 334 (423)
T ss_pred CCCCCC--------------------------------------------------------------------------
Confidence 876610
Q ss_pred ccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCccc
Q 001160 741 AEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQL 820 (1134)
Q Consensus 741 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 820 (1134)
.+....
T Consensus 335 ---------------------------------s~v~~s----------------------------------------- 340 (423)
T KOG0313|consen 335 ---------------------------------SVVSQS----------------------------------------- 340 (423)
T ss_pred ---------------------------------ceeEEe-----------------------------------------
Confidence 000000
Q ss_pred ccCCCCCccccccCCCCCCCCceEEEEeccCCC-EEEEEe-CCeEEEEECCCCe-EEEEecCCCCceEEEEEcCCCCcEE
Q 001160 821 WQPPSGTLMTNDINESKPTEESAACIALSKNDS-YVMSAS-GGKVSLFNMMTFK-VMTMFMSPPPAATFLAFHPQDNNII 897 (1134)
Q Consensus 821 w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~-~la~~s-dg~i~vwd~~~~~-~~~~~~~~~~~i~~l~~s~~~~~~l 897 (1134)
+.+ | .+.|.++.++|... .|++|+ |+++++||+.+.+ ++..+.+|...|.++.|. ++..|
T Consensus 341 ------------~~g--H-~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~--~~~~I 403 (423)
T KOG0313|consen 341 ------------LIG--H-KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN--EGGLI 403 (423)
T ss_pred ------------eec--c-hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc--CCceE
Confidence 112 6 77888888888554 567777 9999999999887 899999999999999998 46799
Q ss_pred EEEeCCCcEEEEEc
Q 001160 898 AIGMEDSSVQIYNV 911 (1134)
Q Consensus 898 asg~~dg~i~iwd~ 911 (1134)
++|+.|.+|+|+..
T Consensus 404 vSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 404 VSGGADNKLRIFKG 417 (423)
T ss_pred EeccCcceEEEecc
Confidence 99999999999864
No 89
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1e-26 Score=239.86 Aligned_cols=298 Identities=19% Similarity=0.248 Sum_probs=227.4
Q ss_pred ccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEec
Q 001160 770 IAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 849 (1134)
Q Consensus 770 ~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s 849 (1134)
.|...|.++++.|.|.++++|+-|..|++||+..-.... ...+...+.. ...|.++.||
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~------------------~~fr~l~P~E---~h~i~sl~ys 223 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM------------------RSFRQLQPCE---THQINSLQYS 223 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccc------------------hhhhccCccc---ccccceeeec
Confidence 378889999999999999999999999999986421100 0011111221 4479999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCCCeEEEE------------ecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce-
Q 001160 850 KNDSYVMSAS-GGKVSLFNMMTFKVMTM------------FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE- 915 (1134)
Q Consensus 850 ~dg~~la~~s-dg~i~vwd~~~~~~~~~------------~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~- 915 (1134)
+.|..|++.+ ....+|+|-+....... -+||...++|.+|+|.....+++++.||++||||+..-+
T Consensus 224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 9999888887 78899999876554332 357999999999999878889999999999999998643
Q ss_pred EEEEec-----CcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEE
Q 001160 916 VKTKLK-----GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL 990 (1134)
Q Consensus 916 ~~~~l~-----~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~ 990 (1134)
.+.+++ +-.-+++.++|++||+++|+|..||.|.+|+..+........+ ...|.. ...++++.||+||++|+
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~v--k~AH~~-g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKV--KDAHLP-GQDITSISFSYDGNYLL 380 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEe--eeccCC-CCceeEEEeccccchhh
Confidence 223332 3334689999999999999999999999999855333222222 233432 14799999999999999
Q ss_pred E-EECCeEEEEeC-CCc-ceeccCCCCCCCCCeEEEEEccCCCEEEEEec------CCcEEEEeCCCcceeeecCCcccc
Q 001160 991 V-VHESQISVYDS-KLE-CSRSWSPKDALPAPISSAIYSCDGLLVYAGFC------DGAIGVFDAETLRFRCRIGPSAYI 1061 (1134)
Q Consensus 991 ~-~~d~~v~vwd~-~~~-~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~------dg~I~vwd~~~~~~~~~~~~~~~~ 1061 (1134)
+ +.|+++++||+ +.+ .+..+... ....+-+.++||||.++|++|+. .|.+.+||..+.+.+.++...
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL-~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~--- 456 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGL-PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS--- 456 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCC-CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC---
Confidence 9 99999999999 433 33333322 22567789999999999999873 577999999999999988744
Q ss_pred cccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEE-ecCCCc
Q 001160 1062 PTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVV-EPSDAE 1103 (1134)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW-~~~~~~ 1103 (1134)
..+++.|.|+| .=++|..|+.||+++++ |.+..+
T Consensus 457 -------~aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp~~S~ 491 (641)
T KOG0772|consen 457 -------TASVVRCLWHP-KLNQIFAGSGDGTAHVYYDPNESI 491 (641)
T ss_pred -------CceEEEEeecc-hhhheeeecCCCceEEEECccccc
Confidence 37788999999 66889999999999886 554443
No 90
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-26 Score=250.34 Aligned_cols=279 Identities=16% Similarity=0.238 Sum_probs=239.4
Q ss_pred eeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeC
Q 001160 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS 428 (1134)
Q Consensus 349 V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~ 428 (1134)
.+-++||..+ ++|+|. +..|.+|+..++....- ..-+.+.|+++.|+++|++||+|..
T Consensus 180 ~nlldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hhHhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeec
Confidence 3457788655 566664 56899999998874431 2224789999999999999999999
Q ss_pred CCeEEEEEcCCCCccceeeEEec-ccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE-ecCCCCCeEEEEee
Q 001160 429 KHIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGHEAPVYSVCPH 506 (1134)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~-~~~h~~~v~~i~~~ 506 (1134)
+|.|.|||..+.+.++ .+.+ |...|.+++|. +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|+
T Consensus 238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 9999999999877666 6667 99999999998 34 789999999999999998776555 88999999999998
Q ss_pred ccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCC-CEEEEEeeCCCCCCcEEEEeCCCCeeEEEecC
Q 001160 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1134)
Q Consensus 507 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1134)
+++ .++++|+.|+.+.|||....+.+..+..|...|.+++|+|-. ..||+|+. ..|++|++||..+|..+.....
T Consensus 311 ~d~--~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 311 PDG--NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred CCC--CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEeccccc
Confidence 755 899999999999999998889999999999999999999954 56666654 5689999999999999988876
Q ss_pred ccCcceEEEEEeCCCCEEEE--EeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCC
Q 001160 586 FRKRSLGVVQFDTTRNRFLA--AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 586 ~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~ 663 (1134)
.. .|.++.|++..+.|++ |..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-+
T Consensus 387 gs--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 387 GS--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CC--ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 55 6999999999987777 44778999999999999999987754 799999999999999999999999999866
Q ss_pred c
Q 001160 664 G 664 (1134)
Q Consensus 664 ~ 664 (1134)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 4
No 91
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.7e-26 Score=261.69 Aligned_cols=303 Identities=17% Similarity=0.248 Sum_probs=236.0
Q ss_pred cccceEEEEEecCCcceEEee--ccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEe
Q 001160 771 AASKVVRLIYTNSGLSLLALA--SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 848 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~ 848 (1134)
+...|.++..+|||..+++++ .|+.+++|+...--. ....++..-...+ ..+ ..| .+.|+|+.|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l-~~m--~~h-~~sv~CVR~ 77 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHL-CTM--DDH-DGSVNCVRF 77 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhh-eee--ccc-cCceeEEEE
Confidence 345689999999999999999 799999998642110 0011121100011 112 237 999999999
Q ss_pred ccCCCEEEEEe-CCeEEEEECCC------------------CeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEE
Q 001160 849 SKNDSYVMSAS-GGKVSLFNMMT------------------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIY 909 (1134)
Q Consensus 849 s~dg~~la~~s-dg~i~vwd~~~------------------~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iw 909 (1134)
+|||++||+|+ |..|.||+... .++...+.+|.+.|..++|+| ++.+||+++.|++|.||
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEE
Confidence 99999999999 78899998872 246788999999999999999 99999999999999999
Q ss_pred EcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEE
Q 001160 910 NVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 989 (1134)
Q Consensus 910 d~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l 989 (1134)
+..+.+.++++++|.+.|..+.|.|-|+++||-+.|++|+||++......+ .+..+..+.........+.|||||++|
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCee
Confidence 999999999999999999999999999999999999999999977755332 344444444444567899999999999
Q ss_pred EEE--EC---CeEEEEeC-CCcceeccCCCCCCCCCeEEEEEcc--------C-----CC----EEEEEecCCcEEEEeC
Q 001160 990 LVV--HE---SQISVYDS-KLECSRSWSPKDALPAPISSAIYSC--------D-----GL----LVYAGFCDGAIGVFDA 1046 (1134)
Q Consensus 990 ~~~--~d---~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~--------d-----g~----~l~~~~~dg~I~vwd~ 1046 (1134)
++. -+ .++.|.+- +.+.-.. .-||.+++.+++|+| + .. .+|+|+.|++|.||..
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~~~~---LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T 311 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKVDKD---LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT 311 (942)
T ss_pred cchhhccCCcceeEEEecCCceeeee---eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence 993 22 35777766 2222222 246789999999997 1 11 5889999999999999
Q ss_pred CCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1047 ETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
...+++..+..- ....++.++|+| ||..|..+|.||+|.+..+++.+
T Consensus 312 ~~~RPl~vi~~l---------f~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 312 ALPRPLFVIHNL---------FNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCCCchhhhhhh---------hcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 887777655421 124567899999 88999999999999999987665
No 92
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.9e-26 Score=247.53 Aligned_cols=262 Identities=17% Similarity=0.288 Sum_probs=228.4
Q ss_pred ccccCccccceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeecccccccccccccccc
Q 001160 328 NVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1134)
Q Consensus 328 ~~~~~~~~~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 406 (1134)
.+|.|+...+....... +++.|+++.|+++|. +||+|..+|.|.|||..+.+.+.. +.+
T Consensus 198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~-------------------~~~ 257 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRT-------------------LRG 257 (484)
T ss_pred eEEEEecCCCceEEeEecCCCceEEEEECCCCC-EEEEeecCCeEEEEehhhcccccc-------------------ccC
Confidence 45677777777655555 489999999999998 789999999999999998877654 445
Q ss_pred -CCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001160 407 -AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1134)
Q Consensus 407 -h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~ 485 (1134)
|...|.+++|+ +..+.+|+.++.|..+|+...+.... .+.+|...|..+.|++|+. ++|+|+.|+.+.|||..
T Consensus 258 ~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 258 SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGL 331 (484)
T ss_pred CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCC
Confidence 99999999998 77899999999999999998776553 3779999999999999999 89999999999999998
Q ss_pred CCeeeEEecCCCCCeEEEEeeccCCccEEEEEe--cCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCC
Q 001160 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA--IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
...++..+..|.+.|.+++|+|-.. .+||+|+ .|++|++||..++..+.... .+..|.++.|++..+-++++..
T Consensus 332 ~~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG-- 407 (484)
T KOG0305|consen 332 SPEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHG-- 407 (484)
T ss_pred CccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecC--
Confidence 8888999999999999999999876 5888875 69999999999766655443 5678999999999988886653
Q ss_pred CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 001160 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 620 (1134)
..+..|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-..
T Consensus 408 ~s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 408 YSENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 3466899999999999999999998 7999999999999999999999999998764
No 93
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=5.3e-26 Score=232.47 Aligned_cols=285 Identities=14% Similarity=0.226 Sum_probs=230.9
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeecc---cc-ccccccccccccCCcCeEEEEEcCC
Q 001160 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDI---SA-ASMPLQNALLNDAAISVNRCVWGPD 419 (1134)
Q Consensus 344 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~l~~h~~~V~~i~~spd 419 (1134)
.|.-+|.||+++||++ +.++++.+|+|.=|++.+|+.... +|.- .+ ...+..... .+|...|.+++.|+|
T Consensus 140 ~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~D 213 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSD 213 (479)
T ss_pred cccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEcCC
Confidence 4888999999999998 578999999999999999986521 1111 11 111222222 489999999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCC
Q 001160 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1134)
Q Consensus 420 g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1134)
|+|||+|+.|..|.||+.++.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++.||++.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd~ 288 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQDG 288 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence 9999999999999999999998777 6889999999999977666 6899999999999999999999999999999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee
Q 001160 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (1134)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1134)
|.+|...... ..+-+|+.|+++++|++ ..+....+.++.+.+.|++|-.+ ..+++|+. +|.|.+|++.+.++
T Consensus 289 v~~IdaL~re--R~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGSd----nG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 289 VLGIDALSRE--RCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGSD----NGSIALWSLLKKKP 360 (479)
T ss_pred eeeechhccc--ceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeeccC----CceEEEeeecccCc
Confidence 9999875543 45555569999999999 34556677888889999999665 56777764 78899999999998
Q ss_pred EEEecCccC-----------cceEEEEEeCCCCEEEEEeCCCeEEEEECCCC----eeEEEEeCCCCCCCcceEEEccCC
Q 001160 580 KRTYSGFRK-----------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADGGLPASPRLRFNKEG 644 (1134)
Q Consensus 580 ~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~s~d~ 644 (1134)
+.+....+. ..|++++..|..+.+++|+.+|.|++|-+..+ +++..+.. ...|++++|+++|
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---~GfVNsl~f~~sg 437 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---VGFVNSLAFSNSG 437 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---ccEEEEEEEccCC
Confidence 877653321 16889999999999999999999999999877 34444443 3468999999999
Q ss_pred CEEEEE
Q 001160 645 SLLAVT 650 (1134)
Q Consensus 645 ~~l~~~ 650 (1134)
+.+++|
T Consensus 438 k~ivag 443 (479)
T KOG0299|consen 438 KRIVAG 443 (479)
T ss_pred CEEEEe
Confidence 966665
No 94
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.6e-26 Score=217.58 Aligned_cols=256 Identities=11% Similarity=0.216 Sum_probs=210.8
Q ss_pred cccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEE
Q 001160 334 DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1134)
Q Consensus 334 ~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 413 (1134)
...-.....+.-.+.+..|+||+.....+++++.||+++|||+..... +...++.|...|.+
T Consensus 48 ~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~S 109 (311)
T KOG0277|consen 48 PKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYS 109 (311)
T ss_pred CCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEE
Confidence 334445666667899999999999988888899999999999543221 22347789999999
Q ss_pred EEEcC-CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE
Q 001160 414 CVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1134)
Q Consensus 414 i~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~ 492 (1134)
+.|++ ++..+++++.|++|++|+...++.+. ++.+|...|...+|+|.... ++++++.|+++++||++..-....
T Consensus 110 vdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~ 185 (311)
T KOG0277|consen 110 VDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMS 185 (311)
T ss_pred eccccccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeE
Confidence 99999 56678888999999999998887666 89999999999999997766 899999999999999986433345
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc-eeEecCCCCcEEEEEECCCCC-EEEEEeeCCCCCCcEE
Q 001160 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLV 570 (1134)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~ 570 (1134)
+..|...|.++.|+...+ ..+++|+.|+.|+.||+++.+. +..+.+|+-.|..++|||... .|++++. |-+++
T Consensus 186 i~ah~~Eil~cdw~ky~~-~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY----DmT~r 260 (311)
T KOG0277|consen 186 IEAHNSEILCCDWSKYNH-NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY----DMTVR 260 (311)
T ss_pred EEeccceeEeecccccCC-cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc----cceEE
Confidence 889999999999987654 7999999999999999998664 557888999999999999764 5667776 78899
Q ss_pred EEeCCCCe-eEEEecCccCcceEEEEEeC-CCCEEEEEeCCCeEEEEEC
Q 001160 571 EWNESEGA-IKRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDM 617 (1134)
Q Consensus 571 ~wd~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~ 617 (1134)
+||...+. .+.+...|.+ -+..+.|++ ++.++++++-|+.++||+.
T Consensus 261 iw~~~~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 261 IWDPERQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ecccccchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 99998544 5555665555 788888887 4578899999999999985
No 95
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=3.9e-27 Score=236.99 Aligned_cols=247 Identities=19% Similarity=0.254 Sum_probs=210.7
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|-.++|+++.|.++++ ++++.+.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 56799999999999999999999999999999998766 333447778888999999999999 788999999999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCC
Q 001160 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
+...+...++.||++.|+++.|.-.. ..+++|+.|.+|++||+....+..... ....+..++.+ ...++++..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~-- 320 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF-- 320 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc--
Confidence 99999999999999999999987654 459999999999999999866655433 23334444444 445556554
Q ss_pred CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC--CCCcceEEEc
Q 001160 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG--LPASPRLRFN 641 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s 641 (1134)
|+.|++||.++..+..+...+. .|+++..++++..+.+++.|.++.+.|+++.+....+...+. ....+.+.||
T Consensus 321 --DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 321 --DKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred --ccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 6779999999999999988776 799999999999999999999999999999998888865432 2347899999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCc
Q 001160 642 KEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 642 ~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
|++.|+++|+.||.|+||++.++
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCc
Confidence 99999999999999999999888
No 96
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.9e-25 Score=215.95 Aligned_cols=239 Identities=22% Similarity=0.265 Sum_probs=199.7
Q ss_pred CCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCc--EEEEEeCCCcEEEEEcC
Q 001160 836 SKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN--IIAIGMEDSSVQIYNVR 912 (1134)
Q Consensus 836 ~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~--~lasg~~dg~i~iwd~~ 912 (1134)
..| .+.|+++|. ++.++|+|+ |.+|+|||+.+.+.+..+..|.+.|+++.|.+ ... .|++|++||.|.+|+..
T Consensus 40 ~aH-~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 40 SAH-AGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred ccc-ccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcC
Confidence 448 999999998 689999999 99999999999999999999999999999998 543 78899999999999999
Q ss_pred CceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE
Q 001160 913 VDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992 (1134)
Q Consensus 913 ~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~ 992 (1134)
..+++..+++|.+.|+.++.+|.+++-++.+.|+.+++||+-+|+.-.. .... ...+.+.|+|.|.+++++
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v---~~L~------~~at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV---LNLK------NKATLVSWSPQGDHFVVS 186 (362)
T ss_pred CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcccee---eccC------CcceeeEEcCCCCEEEEE
Confidence 9999999999999999999999999999999999999999999874322 2221 123569999999999999
Q ss_pred ECCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCc
Q 001160 993 HESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAH 1071 (1134)
Q Consensus 993 ~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1134)
..+.|-+|.+ +......+.. +.++.++.|- ++.+|++|..|+.|.+||-+++...+.+..|. ..
T Consensus 187 ~~~~i~i~q~d~A~v~~~i~~----~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~----------~R 251 (362)
T KOG0294|consen 187 GRNKIDIYQLDNASVFREIEN----PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHE----------NR 251 (362)
T ss_pred eccEEEEEecccHhHhhhhhc----cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecch----------hh
Confidence 8999999999 4444343332 3567777774 56678999999999999999988888887663 33
Q ss_pred cEEEe-ecCCCCCEEEEEeCCCcEEEEecCCC
Q 001160 1072 PLVIA-PHPSEPNQIALGMSDGAVHVVEPSDA 1102 (1134)
Q Consensus 1072 ~~~~~-~~~~d~~~l~s~~~Dg~v~vW~~~~~ 1102 (1134)
+-++. |...++.+|+|+|.||.|++||+...
T Consensus 252 VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 252 VKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 33343 33337789999999999999999866
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.5e-26 Score=245.59 Aligned_cols=242 Identities=19% Similarity=0.237 Sum_probs=207.2
Q ss_pred EEEEc-CCCCEEEEEeCCCeEEEEEcCCCCcc---ceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC-
Q 001160 413 RCVWG-PDGLMLGVAFSKHIVHLYTYNPTGEL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG- 487 (1134)
Q Consensus 413 ~i~~s-pdg~~las~~~dg~i~iwd~~~~~~~---~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~- 487 (1134)
.+..+ |.+++|.+||.||.|++|++...... .....++.|.+.|+.++...+++ .|+++|.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 33344 46778999999999999998654331 11336778999999999999998 7999999999999999887
Q ss_pred -eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc--ee--------Eec-CCCCcEEEEEECCCCCE
Q 001160 488 -RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RV--------DYD-APGNWCTMMAYSADGTR 555 (1134)
Q Consensus 488 -~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~--------~~~-~~~~~v~~~~~s~~~~~ 555 (1134)
-+..++..|.+.|.|+++... +...+++|+.|+.|.+||+.++.. .. .+. ++...|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 577889999999999998422 338999999999999999997633 11 222 56678999999999988
Q ss_pred EEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCc
Q 001160 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1134)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1134)
+++|+. ++.|++||.++++.+..++||.+ .|.++..++||..++++|.||+|++||+...+++.++..|.. .|
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~V 258 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GV 258 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--ce
Confidence 888876 56699999999999999999998 899999999999999999999999999999999999988755 59
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 636 ~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+++..+|+-..+++|+.||.|..=|+.+.
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999999888765
No 98
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.5e-26 Score=242.93 Aligned_cols=287 Identities=20% Similarity=0.266 Sum_probs=235.1
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCC
Q 001160 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1134)
Q Consensus 351 ~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg 430 (1134)
++..++.+.++|++|+.||.|++|++.......+. + ....+..|.++|+.++...+|+.|++++.|.
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~------------~-~~asme~HsDWVNDiiL~~~~~tlIS~SsDt 95 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPST------------P-YIASMEHHSDWVNDIILCGNGKTLISASSDT 95 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCccc------------c-hhhhhhhhHhHHhhHHhhcCCCceEEecCCc
Confidence 55566555558899999999999998754432110 0 1112567999999999999999999999999
Q ss_pred eEEEEEcCCCCccceeeEEecccCCeeEEEE-ecCCCcEEEEEEcCCCcEEEEECCCCe--eeE--------Eec-CCCC
Q 001160 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAF-AHPNKQLCIVTCGDDKMIKVWDVVAGR--KQY--------TFE-GHEA 498 (1134)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~-s~d~~~~~l~sg~~d~~i~iwd~~~~~--~~~--------~~~-~h~~ 498 (1134)
+|++|+...+.. ....++..|.+.|.|+++ .++.. ++|+||-|+.|.+||+++|. .+. .+. |+..
T Consensus 96 TVK~W~~~~~~~-~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 96 TVKVWNAHKDNT-FCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred eEEEeecccCcc-hhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 999999988742 233367789999999999 66666 89999999999999999873 232 233 7889
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe
Q 001160 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1134)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1134)
.|++++.++.+ ..+++|+..+.+++||.++.+....+.+|...|..+..++||..+++++. |++|++||+...+
T Consensus 173 siYSLA~N~t~--t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtIrlWdLgqQr 246 (735)
T KOG0308|consen 173 SIYSLAMNQTG--TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTIRLWDLGQQR 246 (735)
T ss_pred ceeeeecCCcc--eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceEEeeeccccc
Confidence 99999987654 89999999999999999999999999999999999999999999999985 8899999999999
Q ss_pred eEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEE
Q 001160 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (1134)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~i 658 (1134)
++.++..|.+ .|.++..+|+-..+++|+.||.|+.=|+++......+-... .+|..+..+.+.+-+-+++.|+.|+-
T Consensus 247 Cl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~d--aPv~~l~~~~~~~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 247 CLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKED--APVLKLHLHEHDNSVWVTTTDSSIKR 323 (735)
T ss_pred eeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCC--CchhhhhhccccCCceeeecccccee
Confidence 9999999998 69999999999999999999999999999854333332222 36777777754455567788999999
Q ss_pred EECC
Q 001160 659 LANS 662 (1134)
Q Consensus 659 w~~~ 662 (1134)
|...
T Consensus 324 W~~~ 327 (735)
T KOG0308|consen 324 WKLE 327 (735)
T ss_pred cCCc
Confidence 9764
No 99
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1e-24 Score=247.01 Aligned_cols=256 Identities=13% Similarity=0.140 Sum_probs=196.6
Q ss_pred EeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCc-
Q 001160 365 GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGE- 442 (1134)
Q Consensus 365 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd-g~~las~~~dg~i~iwd~~~~~~- 442 (1134)
|+.++.|.+|+......+. .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 4556777888766543322 26789999999999996 79999999999999999986432
Q ss_pred c----ceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEe
Q 001160 443 L----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA 518 (1134)
Q Consensus 443 ~----~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~ 518 (1134)
. .....+.+|...|.+++|+|++.. ++++++.|++|+|||+.+++.+..+. |...|.+++|++++ .+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG--~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKG--NLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCC--CEEEEEe
Confidence 1 122357789999999999999874 56899999999999999998887776 66789999998754 8999999
Q ss_pred cCCeEEEEEccCCCceeEecCCCCcEE-----EEEECCCCCEEEEEeeCCCCCCcEEEEeCCC-CeeEEEecCccCc-ce
Q 001160 519 IDGKIKAWLYDYLGSRVDYDAPGNWCT-----MMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKR-SL 591 (1134)
Q Consensus 519 ~d~~i~~wd~~~~~~~~~~~~~~~~v~-----~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~-~v 591 (1134)
.|+.|++||++++.....+..|.+.+. ...|++++.++++++.++..+++|++||++. ++++..+..+... .+
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 999999999999888888888876543 3345689999999887554456899999995 5666655443321 23
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCC
Q 001160 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1134)
Q Consensus 592 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 644 (1134)
......++|.++++|+.|+.|++|++..+. +..+.......++.+++|.|+.
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 333334558888899999999999998764 3334333344577889999864
No 100
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.1e-26 Score=218.46 Aligned_cols=333 Identities=12% Similarity=0.211 Sum_probs=250.8
Q ss_pred eeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEE
Q 001160 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1134)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 657 (1134)
..++.+.+|.+ .|..++.....+.+.+++.|.+.+||.++++.++.++.+|.+ .|+++.|++.+.++++++.|++..
T Consensus 139 ~lvre~~GHkD-GiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G--SVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 139 RLVRELEGHKD-GIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTG--SVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred eehhhhccccc-ceeeehhhcCCcceeecccccceeEEeeccccceeeeccccc--ceeeEEeccccceEEEccCCcchH
Confidence 45567888888 788888777777888899999999999999999999998754 899999999999999999999999
Q ss_pred EEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccc
Q 001160 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVK 737 (1134)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1134)
||...-. ++....... . .. +....
T Consensus 216 IW~~av~------~~vP~~~a~-------------------------------~------------~h-------SsEeE 239 (481)
T KOG0300|consen 216 IWKAAVN------WEVPSNNAP-------------------------------S------------DH-------SSEEE 239 (481)
T ss_pred HHHHhhc------CcCCCCCCC-------------------------------C------------CC-------Cchhh
Confidence 9974322 100000000 0 00 00000
Q ss_pred cccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccC
Q 001160 738 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVA 817 (1134)
Q Consensus 738 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~ 817 (1134)
. -.+|. ..+-..-....||. +|++
T Consensus 240 ~--e~sDe--------------------------~~~d~d~~~~sD~~---------tiRv------------------- 263 (481)
T KOG0300|consen 240 E--EHSDE--------------------------HNRDTDSSEKSDGH---------TIRV------------------- 263 (481)
T ss_pred h--hcccc--------------------------cccccccccccCCc---------eeee-------------------
Confidence 0 00000 00000000011111 1221
Q ss_pred cccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcE
Q 001160 818 PQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNI 896 (1134)
Q Consensus 818 ~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~ 896 (1134)
....+.+ | ...|.+..|-..|+.+++++ |.+..+||++++..+..+.||....+.++-+| ..++
T Consensus 264 -----------Pl~~ltg--H-~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrL 328 (481)
T KOG0300|consen 264 -----------PLMRLTG--H-RAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRL 328 (481)
T ss_pred -----------eeeeeec--c-ccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceE
Confidence 1112344 8 89999999999999999999 99999999999999999999999999999999 8999
Q ss_pred EEEEeCCCcEEEEEcCCc-eEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCc
Q 001160 897 IAIGMEDSSVQIYNVRVD-EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 975 (1134)
Q Consensus 897 lasg~~dg~i~iwd~~~~-~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~ 975 (1134)
+++.+.|.+.++||.... ..+..|+||.+.|+++.|.-|. .+++++.|.+|++||+.+.... +....- ..
T Consensus 329 VvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsp----lATIRt----dS 399 (481)
T KOG0300|consen 329 VVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSP----LATIRT----DS 399 (481)
T ss_pred EEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCc----ceeeec----CC
Confidence 999999999999999843 4577899999999999998775 4789999999999999885532 111111 14
Q ss_pred CceEEEECCCCcEEEEE-ECCeEEEEeCCCcceeccC--CCCCCCCCeEEEEEccCCC--EEEEEecCCcEEEEeCCCc
Q 001160 976 GETKVQFHNDQTHLLVV-HESQISVYDSKLECSRSWS--PKDALPAPISSAIYSCDGL--LVYAGFCDGAIGVFDAETL 1049 (1134)
Q Consensus 976 ~v~~~~fspdg~~l~~~-~d~~v~vwd~~~~~~~~~~--~~~~h~~~v~~v~~s~dg~--~l~~~~~dg~I~vwd~~~~ 1049 (1134)
.+..++.+..+..+++- .++.|++||+++..+..+. ...+|..-|+|.+|+.+.- -|++++.|..+.=|+++..
T Consensus 400 ~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 400 PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 67899999999999985 5678999999999888776 5578999999999986643 4889999999999998864
No 101
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=4.9e-25 Score=249.46 Aligned_cols=250 Identities=16% Similarity=0.192 Sum_probs=203.5
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc----------ceeeEEecccCCeeEEEEec-CCCcEEEEEEcC
Q 001160 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL----------RQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGD 475 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~----------~~~~~~~~h~~~v~~l~~s~-d~~~~~l~sg~~ 475 (1134)
|-..|.....++|+..+++++.+..+..|+..++..+ .....+.+|.+.|.+++|+| ++. +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 4455677777888777888888877778876554322 11234779999999999999 777 8999999
Q ss_pred CCcEEEEECCCC-------eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEE
Q 001160 476 DKMIKVWDVVAG-------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1134)
Q Consensus 476 d~~i~iwd~~~~-------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1134)
|++|++||+.++ .++..+.+|...|.+++|+|..+ .+|++++.|++|++||+.++.....+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 35678899999999999998643 6999999999999999999888888888999999999
Q ss_pred ECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe----CCCeEEEEECCCCe-eE
Q 001160 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMN-ML 623 (1134)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~-~~ 623 (1134)
|+|+|++|++++. |+.|++||+++++.+..+.+|.......+.|.+++..+++++ .|+.|++||+++.. ++
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 9999999999874 888999999999999999988764556678999888888754 47999999998754 34
Q ss_pred EEEeCCCCCCCcceEEEccCCCEEEEEe-CCCcEEEEECCCc
Q 001160 624 TTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDG 664 (1134)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~dg~i~iw~~~~~ 664 (1134)
.....+. ...+....|++++.+|++++ .|+.|++||+.++
T Consensus 252 ~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 252 STVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred eEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 3333322 23455677999999999887 4999999999877
No 102
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=9.9e-27 Score=229.96 Aligned_cols=200 Identities=17% Similarity=0.258 Sum_probs=167.5
Q ss_pred EEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEE
Q 001160 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527 (1134)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd 527 (1134)
.+.||.++|.|++=+|..-. .+++|+.||.|+|||+.+..++.+|+.|.+.|..+++.. ..+++++.|++|+.|-
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46789999999999998733 799999999999999999999999999999999999865 5799999999999998
Q ss_pred ccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCE-EEEE
Q 001160 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR-FLAA 606 (1134)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~ 606 (1134)
++.. ....+ .....+..+.-+..+..+++||. .|.|||.....++..+.-..+ .|.++.|+|.... |+++
T Consensus 136 ~~~~-p~~ti-lg~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 136 IDGP-PLHTI-LGKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSILASC 206 (433)
T ss_pred ccCC-cceee-eccccccccccccccccccccCc------eeeecccccCCccceeecCCC-ceeEEecCCCcchheeee
Confidence 8753 22222 23445666777777888888864 399999999999999988777 8999999998855 5556
Q ss_pred eCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 607 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 607 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+.|+.|.+||++.+.++..+.... ..+.++|+|++-.+++++.|..++.||+...
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l 261 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNL 261 (433)
T ss_pred ccCCceEEEecccCCccceeeeec---cccceecCccccceeeccccccceehhhhhh
Confidence 699999999999999988876543 3478999998888999999999999998654
No 103
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=3e-25 Score=237.88 Aligned_cols=282 Identities=15% Similarity=0.294 Sum_probs=239.7
Q ss_pred ceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEE-E
Q 001160 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR-C 414 (1134)
Q Consensus 337 ~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-i 414 (1134)
++..+.+. |...|..+++.+.. .+++++.||++++|+-..++.+.+ +.+.+|.+.|.+ +
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i 64 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSI 64 (745)
T ss_pred ceeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccc-----------------eecccCcceeeccc
Confidence 45566666 89999999998887 467899999999999876655432 225678888888 8
Q ss_pred EEcC-CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe
Q 001160 415 VWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1134)
Q Consensus 415 ~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 493 (1134)
++-+ ++-+|++|+.|++|.+|...+...+. .|.+|...|.++....++. +++||.|.++++|. .+++...+
T Consensus 65 ~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l 136 (745)
T KOG0301|consen 65 CYAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSL 136 (745)
T ss_pred eeccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhccc
Confidence 8886 55579999999999999999987766 8899999999999877774 89999999999997 56777889
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEe
Q 001160 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1134)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1134)
.+|+..|++++..|. +.++|||.|++|++|.- ++....+.+|...|..+++-+++.++ +|+ +|+.|++|+
T Consensus 137 ~gH~asVWAv~~l~e---~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~fl-Scs----NDg~Ir~w~ 206 (745)
T KOG0301|consen 137 QGHTASVWAVASLPE---NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFL-SCS----NDGSIRLWD 206 (745)
T ss_pred CCcchheeeeeecCC---CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeE-eec----CCceEEEEe
Confidence 999999999998776 48999999999999954 67788999999999999998876554 554 489999999
Q ss_pred CCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCC
Q 001160 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1134)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 653 (1134)
+ +|+.+.++.+|.. -+.+++...++..++++|+|++++||+.. ++.+.+..+.. .|+++.+-++|. +++|++|
T Consensus 207 ~-~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SD 279 (745)
T KOG0301|consen 207 L-DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSD 279 (745)
T ss_pred c-cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccC
Confidence 8 8999999999998 89999988888999999999999999986 77777776643 688999888886 6778999
Q ss_pred CcEEEEECC
Q 001160 654 NGIKILANS 662 (1134)
Q Consensus 654 g~i~iw~~~ 662 (1134)
|.||||...
T Consensus 280 G~VrVfT~~ 288 (745)
T KOG0301|consen 280 GRVRVFTVD 288 (745)
T ss_pred ceEEEEEec
Confidence 999999876
No 104
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.8e-25 Score=228.58 Aligned_cols=251 Identities=19% Similarity=0.239 Sum_probs=214.7
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcccee--------------eEE-ecccCCeeEEEEecCCCcE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH--------------LEI-DAHVGGVNDIAFAHPNKQL 468 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~--------------~~~-~~h~~~v~~l~~s~d~~~~ 468 (1134)
+..|.-+|.|++++||+++.++++.+++|.=|++.++...+-. ..- .+|...|.+++.++||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 5679999999999999999999999999999999887643100 011 27888999999999999
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEE
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1134)
+|++|+.|..|.|||..+.+.++.+++|.+.|.+++|-... ..+++++.|++|++|+++......++.+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 99999999999999999999999999999999999997655 7899999999999999998888889999999999999
Q ss_pred ECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeC
Q 001160 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1134)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1134)
....++.+-+++. |.++++|++.. +....|.++.. .+.|++|-. ...+++|+++|.|.+|++.+.+++.+...
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~~-sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGEG-SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEeccc----cceeEEEeccc-cceeeeeCCCC-CeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence 8888888777765 88899999953 33345666655 899999875 46899999999999999999998877643
Q ss_pred CCC----------CCCcceEEEccCCCEEEEEeCCCcEEEEECCCch
Q 001160 629 DGG----------LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1134)
Q Consensus 629 ~~~----------~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~ 665 (1134)
..+ ...|++++..|...++|+|+.+|.|++|-+.++.
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc
Confidence 211 1268899999999999999999999999998873
No 105
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=6.6e-25 Score=222.18 Aligned_cols=284 Identities=15% Similarity=0.207 Sum_probs=244.5
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEE
Q 001160 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~ 426 (1134)
..++++...|... .+.+|+.|..+.++|...++.+.. ++||.-.|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence 3788888888844 678999999999999999887764 88999999999999999999999
Q ss_pred eCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecC--CCCCeEEEE
Q 001160 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--HEAPVYSVC 504 (1134)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~--h~~~v~~i~ 504 (1134)
+.|..|+||......... ....|..+|+.+...|.|+ ||++++.|++..+.|+++|..+..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999998766444 5668999999999999999 999999999999999999998876543 234589999
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEec
Q 001160 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1134)
|+|++ .+|.+|..|+.+++||+.+......+.+|.++|..++|+.+|-+|++++. |+.|++||++.-+..+++.
T Consensus 355 fHpDg--Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHPDG--LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcCCc--eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence 99865 89999999999999999999999999999999999999999999999984 6679999999988888888
Q ss_pred CccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 585 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
......+.+++|.+.|.+++.+|.|=.|++++-.+.........+.+....+.+.|....+++++++.|..++++.+
T Consensus 429 l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 429 LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 77666799999999999999998887777777554443333333333446789999999999999999999988754
No 106
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=3.9e-25 Score=249.83 Aligned_cols=236 Identities=19% Similarity=0.281 Sum_probs=209.2
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001160 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~ 486 (1134)
+...+.+..|. +.++++++.+++|++||..++..+.. .+.||.+.|++++|..-+. ++++|+.|.++++||..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecCC
Confidence 56678888887 67899999999999999999876652 3889999999999987454 899999999999999999
Q ss_pred CeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCC
Q 001160 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1134)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1134)
|++.+++.+|...|.++...+ .++++|+.|.+|++|++.++..+..+.+|..+|.++..+ +.++++++. |
T Consensus 281 g~C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~----d 350 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY----D 350 (537)
T ss_pred CcEEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----C
Confidence 999999999999999997643 688899999999999999999999999999999999998 789999986 7
Q ss_pred CcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCC-eeEEEEeCCCCCCCcceEEEccCCC
Q 001160 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNKEGS 645 (1134)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~ 645 (1134)
+.|.+||+.+++++.++.+|.. .|.++.+.+. +.+++|+.|+.|++||+.++ +++.++..|.. -+..+. ..++
T Consensus 351 ~~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~--~v~~l~--~~~~ 424 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLSGHTG-RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS--LVSSLL--LRDN 424 (537)
T ss_pred ceEEEEEhhhceeeeeecCCcc-eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc--cccccc--cccc
Confidence 7899999999999999999888 8999988765 89999999999999999999 89999987754 344333 4578
Q ss_pred EEEEEeCCCcEEEEECCCc
Q 001160 646 LLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~ 664 (1134)
+|++++.|++|++||.+++
T Consensus 425 ~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 425 FLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred eeEeccccccEEEeecccC
Confidence 9999999999999998877
No 107
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.6e-24 Score=198.38 Aligned_cols=307 Identities=13% Similarity=0.090 Sum_probs=225.9
Q ss_pred cccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc
Q 001160 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1134)
....|.+++|.|.|.+.+++++..+.+|...+.......+..... ++.....+...|+.+.|+|.+|||
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~-----------~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAK-----------QPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCccccccccc-----------CCCeEEeeeccccCccEEEEEecC
Confidence 456789999999999999999999999876543211111111111 000000111113399999999999
Q ss_pred CCCEEEEEe-CCeEEEEECCCCeE-----EEEecCCCCceEEEEEcCC---CCcEEEEEe-CCCcEEEEEcCCceEEEEe
Q 001160 851 NDSYVMSAS-GGKVSLFNMMTFKV-----MTMFMSPPPAATFLAFHPQ---DNNIIAIGM-EDSSVQIYNVRVDEVKTKL 920 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~~~~~~-----~~~~~~~~~~i~~l~~s~~---~~~~lasg~-~dg~i~iwd~~~~~~~~~l 920 (1134)
+|.++|+|+ |.+|++..+....+ -..|.-|.+.|..++|-.+ ++.+|++++ .|..|++-|...|+....+
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 999999999 89999876654322 2346679999999999642 567888876 4778999999999999999
Q ss_pred cCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE-ECCeEEE
Q 001160 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISV 999 (1134)
Q Consensus 921 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~v~v 999 (1134)
.+|.+.|.++- +=++-++++|+.|.+|++||+.-..++...-.....+. .....|..++..|.|++|+++ .|....+
T Consensus 180 sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g-lessavaav~vdpsgrll~sg~~dssc~l 257 (350)
T KOG0641|consen 180 SGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG-LESSAVAAVAVDPSGRLLASGHADSSCML 257 (350)
T ss_pred cCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCC-cccceeEEEEECCCcceeeeccCCCceEE
Confidence 99999998874 45788999999999999999987654332111111111 112578999999999999997 5788999
Q ss_pred EeCCCc-ceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeec
Q 001160 1000 YDSKLE-CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPH 1078 (1134)
Q Consensus 1000 wd~~~~-~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1134)
||+.+. .+..+ +.|...|.++.|||...||++++.|..|++-|+. |.+..++.... ...|...++.+.|+
T Consensus 258 ydirg~r~iq~f---~phsadir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~~v-----v~ehkdk~i~~rwh 328 (350)
T KOG0641|consen 258 YDIRGGRMIQRF---HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMV-----VAEHKDKAIQCRWH 328 (350)
T ss_pred EEeeCCceeeee---CCCccceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCceEE-----EEeccCceEEEEec
Confidence 999544 44444 4569999999999999999999999999999998 44444443211 11344678889999
Q ss_pred CCCCCEEEEEeCCCcEEEEecC
Q 001160 1079 PSEPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1079 ~~d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
|.+ --+++.+.|.++.+|-++
T Consensus 329 ~~d-~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 329 PQD-FSFISSSADKTATLWALN 349 (350)
T ss_pred Ccc-ceeeeccCcceEEEeccC
Confidence 965 788899999999999764
No 108
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.3e-25 Score=246.28 Aligned_cols=273 Identities=18% Similarity=0.260 Sum_probs=209.4
Q ss_pred ccccceEEEEEecCCcceEEeeccCeeEEeecccccC------C------------------CCC-Cccccc--------
Q 001160 770 IAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER------N------------------PSG-KATANV-------- 816 (1134)
Q Consensus 770 ~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~------~------------------~~~-~~~~~~-------- 816 (1134)
.|.+.|.++.||+||++|+++|.|+.|+||.+...+. . ... +.....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 5899999999999999999999999999999876110 0 000 000000
Q ss_pred Cc-ccccCCCCCc---cccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcC
Q 001160 817 AP-QLWQPPSGTL---MTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHP 891 (1134)
Q Consensus 817 ~~-~~w~~~~~~~---~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~ 891 (1134)
.. .+.+...... ....+.| | ...|.++.||.++ +|++++ |.+|++|++...++++.|. |..-|||++|+|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~G--H-t~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP 419 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKG--H-TADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP 419 (712)
T ss_pred CccccCCCccccccccchhhhhc--c-chhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence 00 0111111111 1112444 8 9999999999875 566666 9999999999999999998 999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCC
Q 001160 892 QDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ 971 (1134)
Q Consensus 892 ~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~ 971 (1134)
-|.+++++|+-||.||||++...+.+.-...+ +-|++++|+|||+..+.|+.+|.+++|+....+.....-+....+..
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred cCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 99999999999999999999888766554444 78999999999999999999999999999988876666666555544
Q ss_pred CCCcCceEEEECCCCc--EEEEEECCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001160 972 SPLVGETKVQFHNDQT--HLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 972 ~~~~~v~~~~fspdg~--~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~ 1048 (1134)
.....|+.+.|.|... .|+++.|..|+|||. +...+..+..... ...-....|+.||++|++++.|..|++|+...
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-TSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc-CCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 4435699999987654 788899999999999 4444444443322 34456788999999999999999999999854
Q ss_pred c
Q 001160 1049 L 1049 (1134)
Q Consensus 1049 ~ 1049 (1134)
.
T Consensus 578 ~ 578 (712)
T KOG0283|consen 578 F 578 (712)
T ss_pred C
Confidence 3
No 109
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.4e-24 Score=210.90 Aligned_cols=252 Identities=19% Similarity=0.244 Sum_probs=187.4
Q ss_pred ceEEEEEecCCcceEEee-ccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCC
Q 001160 774 KVVRLIYTNSGLSLLALA-SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1134)
Q Consensus 774 ~v~~~~~s~~g~~l~~~~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg 852 (1134)
..+.++|+||.+.++... +...+++|.+...+. |...... .-||- -. + ...| .-.+..+-...++
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~~~--v~~D~--~~-----f-~~kh-~v~~i~iGiA~~~ 199 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSHHF--VHIDN--LE-----F-ERKH-QVDIINIGIAGNA 199 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCccc--ccccc--cc-----c-chhc-ccceEEEeecCCc
Confidence 457889999988776554 457899998754322 2221110 01110 00 1 1125 7778888888899
Q ss_pred CEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcC---Cc-----eEEEEecCc
Q 001160 853 SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR---VD-----EVKTKLKGH 923 (1134)
Q Consensus 853 ~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~---~~-----~~~~~l~~h 923 (1134)
++|++++ |..|.+|++. |+.+..+......-+..+.|| +|++||+++.---|++|++- .| ..+..|+||
T Consensus 200 k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH 277 (420)
T KOG2096|consen 200 KYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH 277 (420)
T ss_pred eEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc
Confidence 9999999 8999999998 899999887777788899999 99999999999999999864 22 234568999
Q ss_pred ccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccc--cceeeecC--CCCCCCCcCceEEEECCCCcEEEEEECCeEEE
Q 001160 924 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL--KSRFIQAP--AGRQSPLVGETKVQFHNDQTHLLVVHESQISV 999 (1134)
Q Consensus 924 ~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~--~~~~~~~~--~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~v 999 (1134)
...|..++||++.+.++|++.||+++|||.+-.-.. ....++.. .-+.. ......+.++|.|+.||++....+.+
T Consensus 278 ~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aa-g~~p~RL~lsP~g~~lA~s~gs~l~~ 356 (420)
T KOG2096|consen 278 QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAA-GSEPVRLELSPSGDSLAVSFGSDLKV 356 (420)
T ss_pred hhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhc-CCCceEEEeCCCCcEEEeecCCceEE
Confidence 999999999999999999999999999998632111 11111111 11111 13456999999999999999999999
Q ss_pred EeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001160 1000 YDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045 (1134)
Q Consensus 1000 wd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd 1045 (1134)
|.. +++....+. ..|...|++++|++||+++++++ |..++++.
T Consensus 357 ~~se~g~~~~~~e--~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 357 FASEDGKDYPELE--DIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred EEcccCccchhHH--HhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 998 555554443 45689999999999999999986 88888886
No 110
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=217.46 Aligned_cols=297 Identities=15% Similarity=0.211 Sum_probs=245.2
Q ss_pred ceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEE
Q 001160 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1134)
Q Consensus 337 ~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~ 415 (1134)
..+++.+. |.+.||.++-..... ++.+++.|.+.+||.+++|.++.+ +.||.+.|+|++
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsik 197 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIK 197 (481)
T ss_pred EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEE
Confidence 44556666 999999999987776 899999999999999999999876 789999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEc------CC------------------------------CCcc-ceeeEEecccCCeeE
Q 001160 416 WGPDGLMLGVAFSKHIVHLYTY------NP------------------------------TGEL-RQHLEIDAHVGGVND 458 (1134)
Q Consensus 416 ~spdg~~las~~~dg~i~iwd~------~~------------------------------~~~~-~~~~~~~~h~~~v~~ 458 (1134)
|++.+.++++++.|++..||.. .. +..+ .+...|.+|.+.|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999999999972 11 0001 134567899999999
Q ss_pred EEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC-CceeEe
Q 001160 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDY 537 (1134)
Q Consensus 459 l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~ 537 (1134)
..|...|+ .+++++.|.+..+||+++|+.+..+.||....+.++-+|.. .++++.+.|.+.++||++.. .....+
T Consensus 278 ~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VF 353 (481)
T KOG0300|consen 278 CDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVF 353 (481)
T ss_pred hhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeee
Confidence 99999999 79999999999999999999999999999999999998876 78999999999999999843 335588
Q ss_pred cCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC-eeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEE
Q 001160 538 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (1134)
Q Consensus 538 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 616 (1134)
.+|...|+++.|.-+. .+++++. |.+|++||+++. .++.++.... +++.++.+..++.++.--++..|++||
T Consensus 354 QGHtdtVTS~vF~~dd-~vVSgSD----DrTvKvWdLrNMRsplATIRtdS--~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTDD-RVVSGSD----DRTVKVWDLRNMRSPLATIRTDS--PANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccccceeEEEEecCC-ceeecCC----CceEEEeeeccccCcceeeecCC--ccceeEeecCCceEEeccCCceEEEEe
Confidence 9999999999998765 5566653 888999999875 4666666544 788899998888888888999999999
Q ss_pred CCCCeeEEEE--eCCCCCCCcceEEEccCC--CEEEEEeCCCcEEEEECCCc
Q 001160 617 MDNMNMLTTV--DADGGLPASPRLRFNKEG--SLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 617 ~~~~~~~~~~--~~~~~~~~v~~~~~s~d~--~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+...++.... ...++...|.|++|..+. .-|++++.|..+.-|++...
T Consensus 427 lnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 427 LNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9765533322 233455678999998654 34788999999999998654
No 111
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.9e-26 Score=227.91 Aligned_cols=287 Identities=13% Similarity=0.188 Sum_probs=232.8
Q ss_pred EEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC
Q 001160 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1134)
Q Consensus 340 ~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp 418 (1134)
+..|. |.+.|.|++=+|..-..+|+|+.||.|+|||+.+..+..+ +..|.+.|..+++..
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v~~ 119 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICVTQ 119 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEecc
Confidence 33444 8899999999999855789999999999999999887765 678999999999987
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCC
Q 001160 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1134)
Q Consensus 419 dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~ 498 (1134)
..+++++.|.+|+.|.++.. .++ ++. ....+..+.-+..+. .++|||. .|.|||.....++..+.--..
T Consensus 120 --~~~~tvgdDKtvK~wk~~~~-p~~---til-g~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~D 188 (433)
T KOG0268|consen 120 --TSFFTVGDDKTVKQWKIDGP-PLH---TIL-GKSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGAD 188 (433)
T ss_pred --cceEEecCCcceeeeeccCC-cce---eee-ccccccccccccccc--cccccCc--eeeecccccCCccceeecCCC
Confidence 77889999999999998873 222 332 234566666666566 7899986 489999999999999988888
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC-C
Q 001160 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-G 577 (1134)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~ 577 (1134)
.|.++.|+|... ..|++|+.|+.|.+||++....+..... ...-+.++|+|.+-.++++. .|..++.+|++. .
T Consensus 189 ti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~----ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 189 SISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAAN----EDHNLYTYDMRNLS 262 (433)
T ss_pred ceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecc----ccccceehhhhhhc
Confidence 999999999865 6889999999999999998877654432 23456889999666666664 488899999986 4
Q ss_pred eeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEE
Q 001160 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1134)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 657 (1134)
.++..+.+|.. .|..+.|+|.|+.+++||.|.+|+||.+..+..-..+-. .....|.++.||.|.+++++|++|+.|+
T Consensus 263 ~p~~v~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd~nvR 340 (433)
T KOG0268|consen 263 RPLNVHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDDGNVR 340 (433)
T ss_pred ccchhhcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCCCccee
Confidence 57778888877 899999999999999999999999999987764443321 1124689999999999999999999999
Q ss_pred EEECCCc
Q 001160 658 ILANSDG 664 (1134)
Q Consensus 658 iw~~~~~ 664 (1134)
+|.....
T Consensus 341 lWka~As 347 (433)
T KOG0268|consen 341 LWKAKAS 347 (433)
T ss_pred eeecchh
Confidence 9987544
No 112
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=3e-25 Score=229.11 Aligned_cols=303 Identities=17% Similarity=0.227 Sum_probs=234.8
Q ss_pred cceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEE
Q 001160 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1134)
Q Consensus 336 ~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i 414 (1134)
|+.+...++ |...|.++++.|.|.+ +++|+.|-+|++||++....-.. .|+ .+.......|.++
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~fr-------------~l~P~E~h~i~sl 220 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SFR-------------QLQPCETHQINSL 220 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hhh-------------ccCccccccccee
Confidence 445555566 6789999999999985 78999999999999986543221 121 1234456689999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCcc---------ceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001160 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGEL---------RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1134)
Q Consensus 415 ~~spdg~~las~~~dg~i~iwd~~~~~~~---------~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~ 485 (1134)
+||+.|..|++.+....++|+|-++.+.. +....-+||...++|.+|+|+.+. .++|++.||+++|||+.
T Consensus 221 ~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 221 QYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDVN 299 (641)
T ss_pred eecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEecC
Confidence 99999999999999999999997754332 223344689999999999999988 79999999999999998
Q ss_pred CCee-eEEec-----CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCce---eEecCCCC--cEEEEEECCCCC
Q 001160 486 AGRK-QYTFE-----GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR---VDYDAPGN--WCTMMAYSADGT 554 (1134)
Q Consensus 486 ~~~~-~~~~~-----~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~--~v~~~~~s~~~~ 554 (1134)
.-+. +..++ +..-+++.++|++++ ..|++|+.||.|.+|+....... ..-..|.. .|+|++||+||+
T Consensus 300 ~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg--~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 300 NTKSQLQVIKTKPAGGKRVPVTSCAWNRDG--KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred CchhheeEEeeccCCCcccCceeeecCCCc--chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc
Confidence 6442 23332 334578889997754 88999999999999998654332 23345555 899999999999
Q ss_pred EEEEEeeCCCCCCcEEEEeCCCC-eeEEEecCccC-cceEEEEEeCCCCEEEEEe------CCCeEEEEECCCCeeEEEE
Q 001160 555 RLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRK-RSLGVVQFDTTRNRFLAAG------DEFQIKFWDMDNMNMLTTV 626 (1134)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~ 626 (1134)
+|++-+. |.++++||++.. +++....+-.. ..-+.++|+|+.+.|++|. ..|.+.+||..+...+..+
T Consensus 378 ~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 378 YLLSRGF----DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred hhhhccC----CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 9999874 788999999864 45555444322 1345688999999999975 4578999999999999998
Q ss_pred eCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001160 627 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 627 ~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
... ...|..+.|+|.-+.|.+|+.||++++|--.
T Consensus 454 ~i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 454 DIS--TASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred cCC--CceEEEEeecchhhheeeecCCCceEEEECc
Confidence 866 3478899999998999999999999998543
No 113
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.5e-24 Score=219.64 Aligned_cols=281 Identities=16% Similarity=0.269 Sum_probs=231.1
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCC
Q 001160 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERP 713 (1134)
Q Consensus 634 ~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1134)
.+.++...+....+++|+.|..+.++|...+ +.+..+.||
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~-q~l~~~~Gh--------------------------------------- 260 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSN-QILATLKGH--------------------------------------- 260 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchh-hhhhhccCc---------------------------------------
Confidence 4566777776678999999999999999888 777777664
Q ss_pred CCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeecc
Q 001160 714 DRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN 793 (1134)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 793 (1134)
...|..+.++++...+++++.|
T Consensus 261 ----------------------------------------------------------~kki~~v~~~~~~~~v~~aSad 282 (506)
T KOG0289|consen 261 ----------------------------------------------------------TKKITSVKFHKDLDTVITASAD 282 (506)
T ss_pred ----------------------------------------------------------ceEEEEEEeccchhheeecCCc
Confidence 4567889999999999999999
Q ss_pred CeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCe
Q 001160 794 AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK 872 (1134)
Q Consensus 794 g~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~ 872 (1134)
..|+||....... ... . ..| ..+|+.+..+|.|.|+++++ ||++.+.|+.++.
T Consensus 283 ~~i~vws~~~~s~-------------------~~~----~--~~h-~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~ 336 (506)
T KOG0289|consen 283 EIIRVWSVPLSSE-------------------PTS----S--RPH-EEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS 336 (506)
T ss_pred ceEEeeccccccC-------------------ccc----c--ccc-cccceeeeeccCCcEEEEecCCceEEEEEccCCc
Confidence 9999997643110 001 1 127 99999999999999999999 8999999999999
Q ss_pred EEEEecCC--CCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEE
Q 001160 873 VMTMFMSP--PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCM 950 (1134)
Q Consensus 873 ~~~~~~~~--~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~i 950 (1134)
.+...... .-.+++.+|+| ||.++++|..||.|+|||+.++..+..|.+|.++|.+++|+.+|-+||++..|+.|++
T Consensus 337 ~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~l 415 (506)
T KOG0289|consen 337 QLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKL 415 (506)
T ss_pred EEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEE
Confidence 88776642 34589999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE-ECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCC
Q 001160 951 WSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDG 1029 (1134)
Q Consensus 951 Wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg 1029 (1134)
||+..-+..+...+... .++..+.|.+.|++|+++ .+=+|++++-..+..........|.+..+.+.|..+.
T Consensus 416 wDLRKl~n~kt~~l~~~-------~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a 488 (506)
T KOG0289|consen 416 WDLRKLKNFKTIQLDEK-------KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA 488 (506)
T ss_pred EEehhhcccceeecccc-------ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccc
Confidence 99998765444333322 258899999999999995 4445555554444444444456678899999999999
Q ss_pred CEEEEEecCCcEEEEeC
Q 001160 1030 LLVYAGFCDGAIGVFDA 1046 (1134)
Q Consensus 1030 ~~l~~~~~dg~I~vwd~ 1046 (1134)
+++++++.|..++++.+
T Consensus 489 q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 489 QYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEeeccchhheEEeec
Confidence 99999999999888764
No 114
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.7e-24 Score=209.48 Aligned_cols=249 Identities=16% Similarity=0.182 Sum_probs=195.6
Q ss_pred ccCCcCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 405 NDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 405 ~~h~~~V~~i~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
....+.|.+++||| ...++++++.||+||+|+++....... .....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWD 100 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEE
Confidence 34678899999999 566777889999999999987433322 24557999999999999998 899999999999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCC
Q 001160 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
+.+++ +..+..|.++|..+.|.+......|++||.|++|+.||.+.......+...+ .++++.. -...++.+..
T Consensus 101 L~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata-- 174 (347)
T KOG0647|consen 101 LASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATA-- 174 (347)
T ss_pred ccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEec--
Confidence 99995 5677789999999999887766799999999999999999888877766544 3444433 2234555543
Q ss_pred CCCCcEEEEeCCCCee-EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCC--eeEEEEeCCCC-------CC
Q 001160 564 EGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTVDADGG-------LP 633 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~-------~~ 633 (1134)
+..|.+|+++.+.. .+......+-.++|++..++....+.|+-+|.+.+..++.+ +.-.++..|.. .-
T Consensus 175 --~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY 252 (347)
T KOG0647|consen 175 --ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY 252 (347)
T ss_pred --CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence 66799999976543 23333333446899999999988899999999999999886 33344555542 23
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 634 ~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.|++++|+|.-..|++++.||++.+||-...
T Consensus 253 aVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 253 AVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred EecceEeecccceEEEecCCceEEEecchhh
Confidence 5788999999899999999999999997654
No 115
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.6e-24 Score=209.35 Aligned_cols=278 Identities=17% Similarity=0.220 Sum_probs=220.0
Q ss_pred EEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 001160 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 441 (1134)
Q Consensus 362 lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~ 441 (1134)
+++|++...|.=+++.-...-..... .....+...+..|.++|+++|. +|.++|+|+.|-+|+|||+.+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~-------~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~ 74 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSV-------KPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK 74 (362)
T ss_pred EEEeeeeeEEEEEEeccCcccccccc-------ceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh
Confidence 45677777766666543220000000 0011223346789999999999 68999999999999999999887
Q ss_pred ccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCC
Q 001160 442 ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG 521 (1134)
Q Consensus 442 ~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~ 521 (1134)
.+. .+-.|.+.|+++.|.++-..-.|++|++||.|.+|+...-.++.++++|.+.|+.++++|++ .+-++.+.|+
T Consensus 75 qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~ 149 (362)
T KOG0294|consen 75 QLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQ 149 (362)
T ss_pred hhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCC--ceEEEEcCCc
Confidence 666 66689999999999987642268999999999999999999999999999999999999987 8999999999
Q ss_pred eEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCC
Q 001160 522 KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN 601 (1134)
Q Consensus 522 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 601 (1134)
.+++||+-.++.-........ -+.+.|+|.|.+++..+ ...|-+|.+.+......+.... .+.|+.|. ++.
T Consensus 150 ~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~-----~~~i~i~q~d~A~v~~~i~~~~--r~l~~~~l-~~~ 220 (362)
T KOG0294|consen 150 VLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSG-----RNKIDIYQLDNASVFREIENPK--RILCATFL-DGS 220 (362)
T ss_pred eeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEe-----ccEEEEEecccHhHhhhhhccc--cceeeeec-CCc
Confidence 999999998877665554333 33499999999988876 4459999998877666655442 46666665 567
Q ss_pred EEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEE--ccCCCEEEEEeCCCcEEEEECCCc
Q 001160 602 RFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF--NKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 602 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.+++|++|+.|.+||.++..+...+..|. ..|..+.+ .|++.+|+++++||.|+|||+...
T Consensus 221 ~L~vG~d~~~i~~~D~ds~~~~~~~~AH~--~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 221 ELLVGGDNEWISLKDTDSDTPLTEFLAHE--NRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEecCCceEEEeccCCCccceeeecch--hheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 89999999999999999998888888774 47888874 457889999999999999999765
No 116
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=4.6e-24 Score=207.75 Aligned_cols=269 Identities=19% Similarity=0.269 Sum_probs=217.4
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
..+.|+.+.|+|.+..||+ ++-||++++||+...+... .-.|..++.+++|.+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~LLv-ssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLV-SSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCcEEE-EeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 3578999999999886554 6689999999999875432 234899999999987 56788
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1134)
+|+.||.|+.+|+.++... .+..|..+|.|+.+++... .+++||.|++|++||.+....+..+. ....|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence 9999999999999998654 4567999999999998776 79999999999999988765555554 334788886
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCCCceeEec--CCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC----e
Q 001160 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG----A 578 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~----~ 578 (1134)
. .|+.|+.|+.|..+.+||+++........ .-.-.+.|+++.|++.-.++++. +|.|.+=.+... +
T Consensus 143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~s 214 (323)
T KOG1036|consen 143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQS 214 (323)
T ss_pred c----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhh
Confidence 5 33789999999999999999876655222 22347899999998887887775 667777666554 4
Q ss_pred eEEEecCccCc--------ceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEE
Q 001160 579 IKRTYSGFRKR--------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1134)
Q Consensus 579 ~~~~~~~~~~~--------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 650 (1134)
....|+.|... +|++++|+|-...|++||.||.|.+||+.+.+.+..+... ...|..++|+.||..||++
T Consensus 215 kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 215 KKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred hceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEE
Confidence 45566666432 7899999999999999999999999999998888877644 3468999999999999998
Q ss_pred eC
Q 001160 651 TS 652 (1134)
Q Consensus 651 ~~ 652 (1134)
+.
T Consensus 293 ~s 294 (323)
T KOG1036|consen 293 SS 294 (323)
T ss_pred ec
Confidence 76
No 117
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.4e-21 Score=213.00 Aligned_cols=276 Identities=15% Similarity=0.208 Sum_probs=224.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcc-ccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE-RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~l 423 (1134)
|...-+.++|.|+|. ++.+++.||.|++|+...-. ...+ +.-++..|.+++- ++.+|
T Consensus 12 ht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~t-------------------i~~~g~~v~~ia~--~s~~f 69 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPET-------------------IDISGELVSSIAC--YSNHF 69 (933)
T ss_pred ccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCch-------------------hhccCceeEEEee--cccce
Confidence 677899999999999 67788889999999987652 2211 2226777877776 55599
Q ss_pred EEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEE
Q 001160 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1134)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1134)
++|+.+++|.+|....++.-. .+....-++.+++|+.+|+ ++|.||+|-.|++-++.+......+++|.++|.++
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred EEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 999999999999999886543 3334567899999999999 89999999999999999999999999999999999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC--------CCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC
Q 001160 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--------GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1134)
.++|.+ .+|++.+.||.|++||++++.....+..- ...+..++|+|+|..+++.+. ++.|.+|+..
T Consensus 145 ~~~p~~--~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r~ 218 (933)
T KOG1274|consen 145 SYDPKG--NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSRK 218 (933)
T ss_pred eEcCCC--CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEccC
Confidence 998866 89999999999999999987766544332 335678999999777666654 7789999999
Q ss_pred CCeeEEEecCccCc-ceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCC
Q 001160 576 EGAIKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1134)
Q Consensus 576 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg 654 (1134)
++.....+...... .+.+++|+|+|+||++++.||.|.|||+++.+. |.....|.+++|.|+...+-.-...|
T Consensus 219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeecc
Confidence 99988888764432 488999999999999999999999999998222 33445799999999988776666666
Q ss_pred cEEEE
Q 001160 655 GIKIL 659 (1134)
Q Consensus 655 ~i~iw 659 (1134)
...+|
T Consensus 293 ~~~~~ 297 (933)
T KOG1274|consen 293 TLGVS 297 (933)
T ss_pred ccccC
Confidence 55554
No 118
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.4e-22 Score=220.84 Aligned_cols=509 Identities=13% Similarity=0.179 Sum_probs=328.1
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCc-EEEEEEcCCCcEEEEECCCCeeeE
Q 001160 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ-LCIVTCGDDKMIKVWDVVAGRKQY 491 (1134)
Q Consensus 413 ~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~-~~l~sg~~d~~i~iwd~~~~~~~~ 491 (1134)
.-.||+|+++++.+. +..|.||...++.++. .+.+|..++..+.+.|.... .++.+++.||.|++||...+..++
T Consensus 21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk 96 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK 96 (792)
T ss_pred ccccccCCcEEEEee-CCEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence 346899999988874 4569999999999887 78899999999999987764 478899999999999999999988
Q ss_pred EecCCCCCeEEEEeec------------cCCccEEEEEec--CCeEEEEEccCCCc-eeEecCCCCcEEEEEECCCCCEE
Q 001160 492 TFEGHEAPVYSVCPHH------------KESIQFIFSTAI--DGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRL 556 (1134)
Q Consensus 492 ~~~~h~~~v~~i~~~~------------~~~~~~l~s~~~--d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l 556 (1134)
++..+ .++.++.+.+ ..+-..+.+.+. -++++-+.+.+... ...+......-.++.+++.|.+.
T Consensus 97 t~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~ 175 (792)
T KOG1963|consen 97 TFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFK 175 (792)
T ss_pred EEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEE
Confidence 87643 3333333211 111111111111 11111111111100 00011111114577888888887
Q ss_pred EEEeeCCCCCCcEEEEeCCCCeeE---EEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCC--CeeEEEEeCCCC
Q 001160 557 FSCGTSKEGESHLVEWNESEGAIK---RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--MNMLTTVDADGG 631 (1134)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~ 631 (1134)
..+. +..+.+|+..++... +....++...+++.+++|+++++++|..||.|.+|.--. ......-..|.|
T Consensus 176 ~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH 250 (792)
T KOG1963|consen 176 GIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH 250 (792)
T ss_pred EEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec
Confidence 7765 445899998875511 112223333578999999999999999999999997543 222222223444
Q ss_pred CCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCC
Q 001160 632 LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLE 711 (1134)
Q Consensus 632 ~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1134)
...|.+++|+++|.+|++|+..|.+.+|.+.++++ +.+
T Consensus 251 ~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k--qfL---------------------------------------- 288 (792)
T KOG1963|consen 251 HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK--QFL---------------------------------------- 288 (792)
T ss_pred ccccceeEEecCCceEeecccceEEEEEeecCCCc--ccc----------------------------------------
Confidence 56899999999999999999999999999988831 111
Q ss_pred CCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEee
Q 001160 712 RPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALA 791 (1134)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 791 (1134)
|. -.+.|..+.+|||+.+.....
T Consensus 289 -------------------------------------------------------PR--Lgs~I~~i~vS~ds~~~sl~~ 311 (792)
T KOG1963|consen 289 -------------------------------------------------------PR--LGSPILHIVVSPDSDLYSLVL 311 (792)
T ss_pred -------------------------------------------------------cc--cCCeeEEEEEcCCCCeEEEEe
Confidence 00 246788999999999999999
Q ss_pred ccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCC
Q 001160 792 SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT 870 (1134)
Q Consensus 792 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~ 870 (1134)
.|+.|.+-......... + +.-..+.+... + .+. .+-.+.++++|.-+.++..+ .|.|.+||+.+
T Consensus 312 ~DNqI~li~~~dl~~k~------t--Isgi~~~~~~~-----k-~~~-~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t 376 (792)
T KOG1963|consen 312 EDNQIHLIKASDLEIKS------T--ISGIKPPTPST-----K-TRP-QSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT 376 (792)
T ss_pred cCceEEEEeccchhhhh------h--ccCccCCCccc-----c-ccc-cccceeEEEcCCCCceeecCCCceEEEEeccc
Confidence 99999987654321110 0 00000000000 0 012 55567889999555555555 89999999988
Q ss_pred CeEEEEecC-----CC------CceEEEEEcCCCCcEEEEEe--------CCC--cEEEEEcCCce----EEE-EecCcc
Q 001160 871 FKVMTMFMS-----PP------PAATFLAFHPQDNNIIAIGM--------EDS--SVQIYNVRVDE----VKT-KLKGHQ 924 (1134)
Q Consensus 871 ~~~~~~~~~-----~~------~~i~~l~~s~~~~~~lasg~--------~dg--~i~iwd~~~~~----~~~-~l~~h~ 924 (1134)
.+.+..+.. +. -.+++++.+. .|.+++|+- .|| .+++|-..... +.. ....|.
T Consensus 377 d~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~ 455 (792)
T KOG1963|consen 377 DSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHG 455 (792)
T ss_pred cceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCC
Confidence 776655431 22 2478888888 699999864 333 57788765432 222 235788
Q ss_pred cceEEEEEecC-CC-EEEEEcCCCcEEEEeCCCcccccc-----eeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeE
Q 001160 925 NRITGLAFSPT-LN-ALVSSGADAQLCMWSIDKWEKLKS-----RFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQI 997 (1134)
Q Consensus 925 ~~i~~l~~s~d-~~-~l~s~~~D~~i~iWd~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v 997 (1134)
..+.+.++.+. .. +++|+|.||.++||-+...+.+.. .+.....-|. .++..++|+.||..|+++.++.|
T Consensus 456 ~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~~I 532 (792)
T KOG1963|consen 456 NAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDDTI 532 (792)
T ss_pred ceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCCEE
Confidence 87777776543 22 799999999999999844332111 1111111122 57899999999999999999999
Q ss_pred EEEeCCC-cceeccCCCCCCCCCeEEEEEcc----CCCEEEEEecCCcEEEEeCCCcceee
Q 001160 998 SVYDSKL-ECSRSWSPKDALPAPISSAIYSC----DGLLVYAGFCDGAIGVFDAETLRFRC 1053 (1134)
Q Consensus 998 ~vwd~~~-~~~~~~~~~~~h~~~v~~v~~s~----dg~~l~~~~~dg~I~vwd~~~~~~~~ 1053 (1134)
.+||... ..+....... ..++..+.|.. ++. +.......+.+|++-+..+.-
T Consensus 533 tiwd~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 533 TIWDYDTKNELLCTEGSR--NWPIAELLFTAQTQNDGA--LVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred EEecCCChhhhhcccccc--ccchHhHhhhcccccccc--eeeccCceEehHhhhhhheec
Confidence 9999933 3222211111 33444444433 333 333467889999998877766
No 119
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=2.4e-24 Score=230.98 Aligned_cols=275 Identities=16% Similarity=0.205 Sum_probs=223.8
Q ss_pred cccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEE-EE
Q 001160 769 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC-IA 847 (1134)
Q Consensus 769 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~-~~ 847 (1134)
.+|...|..+++.++. .+++++.||++++|+-...+ ..-...+.+ | .+-|.. ++
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~---------------------~l~~~~~~~--~-~g~i~~~i~ 65 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQ---------------------YLETHAFEG--P-KGFIANSIC 65 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCcc---------------------cccceeccc--C-cceeeccce
Confidence 4588888888877665 58999999999999732111 111112222 5 666666 78
Q ss_pred ecc-CCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCccc
Q 001160 848 LSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 925 (1134)
Q Consensus 848 ~s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~ 925 (1134)
|.+ |+-.+++|+ |.+|.+|...+..+...+.+|...|.|++.-. ++. +++|++|.++++|-. +++...+.+|..
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a 141 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA 141 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence 875 555688888 99999999999999999999999999999876 565 889999999999964 677788999999
Q ss_pred ceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCc
Q 001160 926 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1005 (1134)
Q Consensus 926 ~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~ 1005 (1134)
.|+++++-|++ .++|||.|.+|++|.-.+ .++.+.||. +-|+.+++-+++.+|-++.||.|++|++++.
T Consensus 142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHt---D~VRgL~vl~~~~flScsNDg~Ir~w~~~ge 210 (745)
T KOG0301|consen 142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHT---DCVRGLAVLDDSHFLSCSNDGSIRLWDLDGE 210 (745)
T ss_pred heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccch---hheeeeEEecCCCeEeecCCceEEEEeccCc
Confidence 99999999988 789999999999998754 567788888 5799999999999999999999999999999
Q ss_pred ceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEE
Q 001160 1006 CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQI 1085 (1134)
Q Consensus 1006 ~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 1085 (1134)
++..+ ++|..-|.+++...++..++++++|+++++|+.. ++...|... + ...-++.+.+ +| -|
T Consensus 211 ~l~~~---~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP--------t--tsiWsa~~L~-Ng-DI 273 (745)
T KOG0301|consen 211 VLLEM---HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP--------T--TSIWSAKVLL-NG-DI 273 (745)
T ss_pred eeeee---eccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC--------c--cceEEEEEee-CC-CE
Confidence 98775 6779999999999999999999999999999987 666666533 1 2333555555 33 57
Q ss_pred EEEeCCCcEEEEecC
Q 001160 1086 ALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1086 ~s~~~Dg~v~vW~~~ 1100 (1134)
++|++||.||||...
T Consensus 274 vvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 274 VVGGSDGRVRVFTVD 288 (745)
T ss_pred EEeccCceEEEEEec
Confidence 789999999999876
No 120
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.2e-24 Score=206.44 Aligned_cols=220 Identities=13% Similarity=0.163 Sum_probs=156.1
Q ss_pred cccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-----cceeeEEecccCCeeEEEEecCCCcEEEEEEcCC
Q 001160 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE-----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1134)
Q Consensus 402 ~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d 476 (1134)
..|++|.+.|++++||.||++||+++.|+.|++|+++.-.. ++...+ -+--+.++|+||-+. +++++-..
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve----~dhpT~V~FapDc~s-~vv~~~~g 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE----YDHPTRVVFAPDCKS-VVVSVKRG 154 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc----CCCceEEEECCCcce-EEEEEccC
Confidence 34889999999999999999999999999999999986322 222111 123578899999886 56666677
Q ss_pred CcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEE
Q 001160 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1134)
Q Consensus 477 ~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1134)
.++++|-+...+. ..+.-|.-++-.+.| . ..|...+..+-...+++++
T Consensus 155 ~~l~vyk~~K~~d-G~~~~~~v~~D~~~f-----------------------~--------~kh~v~~i~iGiA~~~k~i 202 (420)
T KOG2096|consen 155 NKLCVYKLVKKTD-GSGSHHFVHIDNLEF-----------------------E--------RKHQVDIINIGIAGNAKYI 202 (420)
T ss_pred CEEEEEEeeeccc-CCCCccccccccccc-----------------------c--------hhcccceEEEeecCCceEE
Confidence 7888887543221 111111111111111 0 1133345556666778888
Q ss_pred EEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECC---CCe---eEEEEeCCC
Q 001160 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD---NMN---MLTTVDADG 630 (1134)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~---~~~~~~~~~ 630 (1134)
++++. +..|.+|+++ |+.+..+..... .-...+.+|+|+++++++..-.|++|.+- .|. ....+...+
T Consensus 203 msas~----dt~i~lw~lk-Gq~L~~idtnq~-~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG 276 (420)
T KOG2096|consen 203 MSASL----DTKICLWDLK-GQLLQSIDTNQS-SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG 276 (420)
T ss_pred EEecC----CCcEEEEecC-Cceeeeeccccc-cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc
Confidence 88875 6669999988 888887776554 45568899999999999988899999863 222 233444455
Q ss_pred CCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 631 ~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+...|..++|+++...+++.+.||+++|||.+-.
T Consensus 277 H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 277 HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred chhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence 5778999999999999999999999999997543
No 121
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=2.8e-24 Score=220.56 Aligned_cols=265 Identities=14% Similarity=0.249 Sum_probs=216.0
Q ss_pred EEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC
Q 001160 339 VVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1134)
Q Consensus 339 ~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp 418 (1134)
....+.|.+.|+.+.+-|....++|+++..+.|.|||+.+..-..... ....+...|.+|...=..++|++
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~---------~~~~Pdl~L~gH~~eg~glsWn~ 187 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS---------GECRPDLRLKGHEKEGYGLSWNR 187 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc---------ccCCCceEEEeeccccccccccc
Confidence 345566999999999999999999999999999999997654332100 01122334789999888999999
Q ss_pred CC-CEEEEEeCCCeEEEEEcCCCCc----cceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC--CCeeeE
Q 001160 419 DG-LMLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV--AGRKQY 491 (1134)
Q Consensus 419 dg-~~las~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~--~~~~~~ 491 (1134)
.. -.|++++.|++|++||+..... +.....+.+|...|..++|++-... +++++++|+.+.|||++ +.++.+
T Consensus 188 ~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 188 QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcc
Confidence 54 4889999999999999986544 5566678899999999999998776 79999999999999999 566677
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc-eeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEE
Q 001160 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1134)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1134)
...+|.+.|+|++|+|.. +..||+||.|++|.+||+++... ...+.+|...|..+.|+|....+++.+. .|+.+.
T Consensus 267 ~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl~ 342 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRLN 342 (422)
T ss_pred cccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcEE
Confidence 888999999999999986 48999999999999999998665 5688999999999999998776554432 488999
Q ss_pred EEeCCCC--------------eeEEEecCccCcceEEEEEeCCCCEEE-EEeCCCeEEEEECC
Q 001160 571 EWNESEG--------------AIKRTYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQIKFWDMD 618 (1134)
Q Consensus 571 ~wd~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~ 618 (1134)
+||+..- +++..-.||.. .|..+.|+|+..+++ +.++|+.+.||.+.
T Consensus 343 vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 343 VWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9998642 23355567766 799999999997755 57899999999986
No 122
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=2.5e-23 Score=235.89 Aligned_cols=228 Identities=14% Similarity=0.215 Sum_probs=182.4
Q ss_pred EeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecC-CCcEEEEEEcCCCcEEEEECCCCe--------eeEEecCC
Q 001160 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGR--------KQYTFEGH 496 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d-~~~~~l~sg~~d~~i~iwd~~~~~--------~~~~~~~h 496 (1134)
|+.++.|++|+..... ....+.+|.+.|.+++|+|+ +. +|++|+.|++|+|||+.++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 5668889999987653 33478899999999999997 55 89999999999999997642 34567899
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC
Q 001160 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1134)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1134)
...|.+++|+|... .++++++.|++|++||+++++....+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 99999999998752 456899999999999999888766665 4568999999999999998864 77899999999
Q ss_pred CeeEEEecCccCcc----eEEEEEeCCCCEEEEEeCCC----eEEEEECCC-CeeEEEEeCCCCCCCcceEEEccCCCEE
Q 001160 577 GAIKRTYSGFRKRS----LGVVQFDTTRNRFLAAGDEF----QIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLL 647 (1134)
Q Consensus 577 ~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~~l 647 (1134)
++.+.++.+|.+.. +....|++++.+++++|.|+ .|++||+++ ++++..+..+.....+......++|.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999987621 22234568999999988664 799999995 6677666555443333333445568899
Q ss_pred EEEeCCCcEEEEECCCc
Q 001160 648 AVTTSDNGIKILANSDG 664 (1134)
Q Consensus 648 ~~~~~dg~i~iw~~~~~ 664 (1134)
++|+.|++|++|++..+
T Consensus 279 lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEECCCeEEEEEccCC
Confidence 99999999999999765
No 123
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.1e-22 Score=221.11 Aligned_cols=511 Identities=15% Similarity=0.176 Sum_probs=327.1
Q ss_pred eEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCc-cEEEEEecCCeEEEEEccCCCcee
Q 001160 457 NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI-QFIFSTAIDGKIKAWLYDYLGSRV 535 (1134)
Q Consensus 457 ~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~ 535 (1134)
....|++|++ .++.+. +..|.|+...+|.++..+.+|..++..+.+.+.... .++++++.||.|++||...+....
T Consensus 20 ~~avfSnD~k--~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk 96 (792)
T KOG1963|consen 20 SPAVFSNDAK--FLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK 96 (792)
T ss_pred cccccccCCc--EEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence 3457899998 444333 568999999999999999999999999999887764 678899999999999999888777
Q ss_pred EecCCCCcEEEEEECC---CCCEEEEEe-eC--------CCCCCcEEEEeCCCC--eeEEEecCccCcceEEEEEeCCCC
Q 001160 536 DYDAPGNWCTMMAYSA---DGTRLFSCG-TS--------KEGESHLVEWNESEG--AIKRTYSGFRKRSLGVVQFDTTRN 601 (1134)
Q Consensus 536 ~~~~~~~~v~~~~~s~---~~~~l~~~~-~~--------~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~ 601 (1134)
.+..+.. +..+.+.| +-...+..+ .+ .+..++.+-+.+.+- ........+. .-.++.+++.|.
T Consensus 97 t~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~--~~~~I~~~~~ge 173 (792)
T KOG1963|consen 97 TFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ--EPKSIVDNNSGE 173 (792)
T ss_pred EEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc--CCccEEEcCCce
Confidence 6665433 22332222 111111111 00 011111111111110 0011111111 134577888776
Q ss_pred EEEEEeCCCeEEEEECCCCeeEEEE-e-CCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCccccc
Q 001160 602 RFLAAGDEFQIKFWDMDNMNMLTTV-D-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKN 679 (1134)
Q Consensus 602 ~l~~~~~dg~i~iwd~~~~~~~~~~-~-~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 679 (1134)
+.... .+..+.+|+..++...... . ...|.-.+++.++||.++++|+|..||.|.+|.--.. ....
T Consensus 174 ~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-------~~~~---- 241 (792)
T KOG1963|consen 174 FKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-------SDDS---- 241 (792)
T ss_pred EEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-------cccc----
Confidence 65555 4557889998875511111 1 1122334789999999999999999999999974321 0000
Q ss_pred CCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCcc
Q 001160 680 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 759 (1134)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~ 759 (1134)
...++.-|
T Consensus 242 ---------------------------------------------------------------~t~t~lHW--------- 249 (792)
T KOG1963|consen 242 ---------------------------------------------------------------ETCTLLHW--------- 249 (792)
T ss_pred ---------------------------------------------------------------ccceEEEe---------
Confidence 00122222
Q ss_pred ceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCC
Q 001160 760 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839 (1134)
Q Consensus 760 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~ 839 (1134)
|...|.+++|+++|.+|++||..|.+.+|.+.+.+. ..++. -
T Consensus 250 -----------H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k------------------------qfLPR--L- 291 (792)
T KOG1963|consen 250 -----------HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK------------------------QFLPR--L- 291 (792)
T ss_pred -----------cccccceeEEecCCceEeecccceEEEEEeecCCCc------------------------ccccc--c-
Confidence 677899999999999999999999999997654221 11222 2
Q ss_pred CCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCC-----------CCceEEEEEcCCCCcEEEEEeCCCcEE
Q 001160 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSP-----------PPAATFLAFHPQDNNIIAIGMEDSSVQ 907 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~-----------~~~i~~l~~s~~~~~~lasg~~dg~i~ 907 (1134)
..+|..+.+|||+.+.+..- |+.|.+....+.....++.+. .+-.+.++++| ..+.++..+..|.|+
T Consensus 292 gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ 370 (792)
T KOG1963|consen 292 GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQ 370 (792)
T ss_pred CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEE
Confidence 78899999999999988886 999999998777665555442 22367789999 777888889999999
Q ss_pred EEEcCCceEEEEec-----------CcccceEEEEEecCCCEEEEEc--------CC--CcEEEEeCCCcccccceeeec
Q 001160 908 IYNVRVDEVKTKLK-----------GHQNRITGLAFSPTLNALVSSG--------AD--AQLCMWSIDKWEKLKSRFIQA 966 (1134)
Q Consensus 908 iwd~~~~~~~~~l~-----------~h~~~i~~l~~s~d~~~l~s~~--------~D--~~i~iWd~~~~~~~~~~~~~~ 966 (1134)
+||+-+.+.+..+. .+.-.+++++.+-.|.+++|.- .| -.+++|-......--......
T Consensus 371 ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I 450 (792)
T KOG1963|consen 371 FYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKI 450 (792)
T ss_pred EEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEE
Confidence 99998876655442 2334588888888999999864 23 357899876654322222222
Q ss_pred CCCCCCCCcCceEEEECCCCc-EEEE-EECCeEEEEeCCCcc-e-------eccCCCCCCCCCeEEEEEccCCCEEEEEe
Q 001160 967 PAGRQSPLVGETKVQFHNDQT-HLLV-VHESQISVYDSKLEC-S-------RSWSPKDALPAPISSAIYSCDGLLVYAGF 1036 (1134)
Q Consensus 967 ~~~~~~~~~~v~~~~fspdg~-~l~~-~~d~~v~vwd~~~~~-~-------~~~~~~~~h~~~v~~v~~s~dg~~l~~~~ 1036 (1134)
...|.. ..+..+.+++... .+++ +.|+.+++|-.+... + ........|..++++.+||.||..|+ ++
T Consensus 451 ~~PH~~--~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s 527 (792)
T KOG1963|consen 451 NNPHGN--AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VS 527 (792)
T ss_pred ecCCCc--eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-Ee
Confidence 233321 2334444444444 5666 589999999872111 1 01112234789999999999998665 55
Q ss_pred cCCcEEEEeCCC-cceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCccccCC
Q 001160 1037 CDGAIGVFDAET-LRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGG 1108 (1134)
Q Consensus 1037 ~dg~I~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~ 1108 (1134)
.|++|.+||..+ .++.+.......... +.. -.+-.+.+ ..+.....+.+.+|++.+....|..
T Consensus 528 ~~~~Itiwd~~~~~~l~~~~~~~~~~~~----~~~---~~~~~~~~--~~~~~~~~~~l~~WNll~~~l~w~~ 591 (792)
T KOG1963|consen 528 FDDTITIWDYDTKNELLCTEGSRNWPIA----ELL---FTAQTQND--GALVHATQQRLSVWNLLSMSLIWNL 591 (792)
T ss_pred cCCEEEEecCCChhhhhccccccccchH----hHh---hhcccccc--cceeeccCceEehHhhhhhheecch
Confidence 799999999999 555555543221111 000 01111213 3334445678999999998888844
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=2.9e-24 Score=220.74 Aligned_cols=293 Identities=14% Similarity=0.212 Sum_probs=234.7
Q ss_pred eEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEc
Q 001160 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 338 ~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
+.+.+|.|.+-|.++++|...++ +.+|+ .|.|+|||+....... . ..+.. ......-|.++.++
T Consensus 411 rq~~tL~HGEvVcAvtIS~~trh-VyTgG-kgcVKVWdis~pg~k~--P-----------vsqLd-cl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISQPGNKS--P-----------VSQLD-CLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcce-eEecC-CCeEEEeeccCCCCCC--c-----------ccccc-ccCcccceeeeEec
Confidence 45778889999999999999984 67776 6899999997542110 0 00110 11245679999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCC
Q 001160 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1134)
Q Consensus 418 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~ 497 (1134)
|||+.|++|+.-.++.|||+..... +...++..-.-..++++.+||.+ +.+++..||.|.|||+.+...++.|+||.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 9999999999999999999987543 22224444445678899999999 88999999999999999999999999999
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC
Q 001160 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1134)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1134)
+.+.||.++. ||..|.+|+.|++||.||++.+....... ....|.++..+|++.+++.+-. ++.+.+.... +
T Consensus 552 DGascIdis~--dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-k 623 (705)
T KOG0639|consen 552 DGASCIDISK--DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-K 623 (705)
T ss_pred CCceeEEecC--CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecc----cCcEEEEecC-C
Confidence 9999999965 55899999999999999999877665433 3457999999999999999874 5556666543 3
Q ss_pred eeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEE
Q 001160 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1134)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 657 (1134)
.....+..|.. .|.++.|.+.|+++++.|.|..+..|...-|..+...... ..|.++.+|.|.+++++|+.|....
T Consensus 624 p~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 624 PEKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred ccceeeccccc-EEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceE
Confidence 33444555555 8999999999999999999999999999888877666533 4789999999999999999998888
Q ss_pred EEEC
Q 001160 658 ILAN 661 (1134)
Q Consensus 658 iw~~ 661 (1134)
||.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8865
No 125
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.7e-24 Score=201.59 Aligned_cols=252 Identities=20% Similarity=0.285 Sum_probs=209.6
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEec--CCCcEEEEEEcCCCcEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--d~~~~~l~sg~~d~~i~i 481 (1134)
-..|.+.|..+...--|++||+|+.|++|+|+.+..+.......+|.||.++|+.++|.. -|. +||+++.||.|.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVIi 84 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEEE
Confidence 456999999999988999999999999999999998877667779999999999999976 677 9999999999999
Q ss_pred EECCCCee--eEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc---eeEecCCCCcEEEEEECCC---C
Q 001160 482 WDVVAGRK--QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSAD---G 553 (1134)
Q Consensus 482 wd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~---~ 553 (1134)
|.-++|+- .+.+..|+..|++++|.|.+-|-.|++++.||.|.+.++++... ......|.-.|++++|.|- |
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 99777753 34677899999999999999999999999999999999887622 3355667889999999986 4
Q ss_pred -----------CEEEEEeeCCCCCCcEEEEeCCCCe--eEEEecCccCcceEEEEEeCCC----CEEEEEeCCCeEEEEE
Q 001160 554 -----------TRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKRSLGVVQFDTTR----NRFLAAGDEFQIKFWD 616 (1134)
Q Consensus 554 -----------~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~iwd 616 (1134)
+.|++++. |..|+||+...++ ..+++.+|.+ .|+.++|.|.- .++++++.||++.||.
T Consensus 165 ~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred cccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 56888885 7789999988764 4456888888 89999999965 5799999999999998
Q ss_pred CCCC-eeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001160 617 MDNM-NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 617 ~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
.+.. +.-..-..+.....+..+.||..|+.|++++.|+.+.+|.-.
T Consensus 240 ~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 240 KDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 7632 111111112233568999999999999999999999999754
No 126
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=5.2e-24 Score=218.85 Aligned_cols=282 Identities=13% Similarity=0.161 Sum_probs=226.7
Q ss_pred cccceEEEEEecCCcceEEeeccCeeEEeecccccC-CCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEec
Q 001160 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER-NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 849 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s 849 (1134)
|..-|..+.+|...+.+++++ .|.|+|||+....- .|.. .+..... ...|+++.++
T Consensus 418 HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~Pvs---------------------qLdcl~r-dnyiRSckL~ 474 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVS---------------------QLDCLNR-DNYIRSCKLL 474 (705)
T ss_pred cCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccc---------------------cccccCc-ccceeeeEec
Confidence 666777888888888888765 56899999864211 0100 0111112 7789999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCCCeEEE--EecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccc
Q 001160 850 KNDSYVMSAS-GGKVSLFNMMTFKVMT--MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR 926 (1134)
Q Consensus 850 ~dg~~la~~s-dg~i~vwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~ 926 (1134)
|||+.|++|+ -.++.|||+..-.... .+......+.+++.+| |.++..++..||.|.|||+.+...++.|+||.+.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDG 553 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 553 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCC
Confidence 9999999999 6889999998654433 3333335688899999 8999999999999999999999999999999999
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE-ECCeEEEEeCCCc
Q 001160 927 ITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLE 1005 (1134)
Q Consensus 927 i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~v~vwd~~~~ 1005 (1134)
+.||.+++||..|-|||-|.+||-||+.++..+...-. ...|..+..+|.+.+|+++ .++.|.|...++.
T Consensus 554 ascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF---------~SQIfSLg~cP~~dWlavGMens~vevlh~skp 624 (705)
T KOG0639|consen 554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF---------SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP 624 (705)
T ss_pred ceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhh---------hhhheecccCCCccceeeecccCcEEEEecCCc
Confidence 99999999999999999999999999999875432111 1468889999999999997 5678888877444
Q ss_pred ceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEE
Q 001160 1006 CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQI 1085 (1134)
Q Consensus 1006 ~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 1085 (1134)
..-.+ +-|...|.++.|++.|+++++.+.|..+-.|...-|..+.+.... ..+++|..+. |.++|
T Consensus 625 ~kyql---hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~-----------SsVlsCDIS~-ddkyI 689 (705)
T KOG0639|consen 625 EKYQL---HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES-----------SSVLSCDISF-DDKYI 689 (705)
T ss_pred cceee---cccccEEEEEEecccCceeeecCchhhhhhccCccccceeecccc-----------Ccceeeeecc-CceEE
Confidence 33222 456899999999999999999999999999999999999877533 5678888887 66999
Q ss_pred EEEeCCCcEEEEecC
Q 001160 1086 ALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1086 ~s~~~Dg~v~vW~~~ 1100 (1134)
|||+.|....||.+.
T Consensus 690 VTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 690 VTGSGDKKATVYEVI 704 (705)
T ss_pred EecCCCcceEEEEEe
Confidence 999999988888763
No 127
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=3.9e-23 Score=198.70 Aligned_cols=301 Identities=16% Similarity=0.238 Sum_probs=230.7
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC-CCCE
Q 001160 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLM 422 (1134)
Q Consensus 344 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp-dg~~ 422 (1134)
.|.+.|+++.+.+..-+++++|+.||.|.+||+++........+ +.+.......+-..+|+-.|..+.|-| |.-.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l----i~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL----IAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc----eeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 38899999999997666889999999999999987652221110 011111122223568999999999999 6668
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCC-cEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeE
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK-QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~-~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 501 (1134)
+.+++-|.+++|||.++-+... .|+ ..+.|++-+++|-.. ..++|+|..|-.|++.|+.+|...+++.||.+.|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~---~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAV---DFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred eecccccceEEEeecccceeeE---Eee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 8889999999999999866543 332 466788888888543 44789999999999999999999999999999999
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEccCC-CceeEe--------------cCCCCcEEEEEECCCCCEEEEEeeCCCCC
Q 001160 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDY--------------DAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1134)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~--------------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1134)
++.|+|..+ -.|++|+.||.|++||++.. .+...+ ..|.+.|..++|+.++.++++++. +
T Consensus 193 aV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt----d 267 (397)
T KOG4283|consen 193 AVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT----D 267 (397)
T ss_pred EEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC----c
Confidence 999999875 68899999999999999764 333322 345568999999999999999986 7
Q ss_pred CcEEEEeCCCCeeEEE-ec--CccC--c-ceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEE
Q 001160 567 SHLVEWNESEGAIKRT-YS--GFRK--R-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (1134)
Q Consensus 567 ~~i~~wd~~~~~~~~~-~~--~~~~--~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 640 (1134)
..+++|+...|+-... +- .+.+ . .+. +. +.+...++.--.++.+.++++-.+..+..+..| ...+.+.++
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h--~k~i~c~~~ 343 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH--LKRINCAAY 343 (397)
T ss_pred cceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecc--cceeeEEee
Confidence 7899999988753211 11 0111 0 111 22 333444555556689999999999999999988 347899999
Q ss_pred ccCCCEEEEEeCCCcEEEEEC
Q 001160 641 NKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 641 s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
.|+-+...+|..|+.|..|-.
T Consensus 344 ~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 344 RPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cCchhhhhccccCCccccccc
Confidence 999999999999999999976
No 128
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.5e-22 Score=195.70 Aligned_cols=243 Identities=16% Similarity=0.122 Sum_probs=191.5
Q ss_pred cCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001160 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1134)
Q Consensus 406 ~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~ 485 (1134)
...+.|+++.|+|.++.|++++.||++++||+....... .+ .|..++.+++|.++.+ +++|+-||.|+.+|+.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~---~~-~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL---KF-KHGAPLLDCAFADEST---IVTGGLDGQVRRYDLN 83 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh---he-ecCCceeeeeccCCce---EEEeccCceEEEEEec
Confidence 357789999999999999999999999999999874333 33 4899999999998664 8999999999999999
Q ss_pred CCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCC
Q 001160 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1134)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1134)
++... .+..|..+|.++...+.. ..+++|+.|++|++||.+.......+... ..|.++..+ |+.|++++.
T Consensus 84 ~~~~~-~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v~--g~~LvVg~~---- 153 (323)
T KOG1036|consen 84 TGNED-QIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDVS--GNRLVVGTS---- 153 (323)
T ss_pred CCcce-eeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccC-ceEEEEecc--CCEEEEeec----
Confidence 88754 455699999999998765 68999999999999999874444444433 378777654 567777654
Q ss_pred CCcEEEEeCCCCeeEEE-ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCC----eeEEEEeCCCC-------CC
Q 001160 566 ESHLVEWNESEGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADGG-------LP 633 (1134)
Q Consensus 566 ~~~i~~wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-------~~ 633 (1134)
+..+.+||+++...... ....-+-.++|+++-|++.-+++++-||.|.+=.++.. +....+..|.. .-
T Consensus 154 ~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 154 DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred CceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 77899999997654332 22222337899999999888999999999988666654 33344444421 23
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEECCCch
Q 001160 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1134)
Q Consensus 634 ~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~ 665 (1134)
+|++++|+|-...+++|+.||.|.+||..+.+
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK 265 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcchh
Confidence 68999999998899999999999999998873
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.1e-22 Score=208.87 Aligned_cols=225 Identities=13% Similarity=0.147 Sum_probs=193.3
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC-
Q 001160 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV- 485 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~- 485 (1134)
-.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+|+.|+.||. +|+|||.||.|.+|++.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTD 154 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEe
Confidence 34679999999999999999999999999999999887 6679999999999999999 89999999999999864
Q ss_pred --------CCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEE
Q 001160 486 --------AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1134)
Q Consensus 486 --------~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1134)
+-++++.|..|.-+|+++...+.+...+++++|.|.++++||+..+..+..+. ....+.+++.+|-++.++
T Consensus 155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~y 233 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVY 233 (476)
T ss_pred ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEE
Confidence 34577889999999999998877666899999999999999999887666554 355789999999999999
Q ss_pred EEeeCCCCCCcEEEEeCCC----------------CeeEEEecCccC-cceEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 001160 558 SCGTSKEGESHLVEWNESE----------------GAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1134)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~----------------~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 620 (1134)
+|+. +|.|.+.++.. +..+..+.+|.+ ..|+|++++-||..|++|+.||.|++||+.+.
T Consensus 234 iGt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 234 IGTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred ecCC----cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 9875 77788776643 234566777765 57999999999999999999999999999999
Q ss_pred eeEEEEeCCCCCCCcceEEEccC
Q 001160 621 NMLTTVDADGGLPASPRLRFNKE 643 (1134)
Q Consensus 621 ~~~~~~~~~~~~~~v~~~~~s~d 643 (1134)
++++++... ..+|+.+.+.|-
T Consensus 310 Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 310 QCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred HHHHHHhhh--ccccceeEeecc
Confidence 999888743 347888888663
No 130
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=8.4e-23 Score=209.76 Aligned_cols=253 Identities=17% Similarity=0.261 Sum_probs=205.0
Q ss_pred ccCCcCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCcc-------ceeeEEecccCCeeEEEEecCCCcEEEEEEcCC
Q 001160 405 NDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGEL-------RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1134)
Q Consensus 405 ~~h~~~V~~i~~spd-g~~las~~~dg~i~iwd~~~~~~~-------~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d 476 (1134)
..|.+.|+.+..-|. ...+|+.+..+.|.|||..+.... +....+.+|...-++++|++.... .+++++.|
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~d 199 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSDD 199 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccCC
Confidence 459999999999995 456777788999999998654322 233478899998889999998776 89999999
Q ss_pred CcEEEEECCCCe-------eeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcc--CCCceeEecCCCCcEEEE
Q 001160 477 KMIKVWDVVAGR-------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD--YLGSRVDYDAPGNWCTMM 547 (1134)
Q Consensus 477 ~~i~iwd~~~~~-------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~v~~~ 547 (1134)
++|++||+.... ....+.+|...|..++|++... .++++++.|+.+.|||++ +.+.......|...|.|+
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence 999999997533 2356889999999999999865 799999999999999999 555566788899999999
Q ss_pred EECCCCCEE-EEEeeCCCCCCcEEEEeCCCC-eeEEEecCccCcceEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeeE-
Q 001160 548 AYSADGTRL-FSCGTSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNML- 623 (1134)
Q Consensus 548 ~~s~~~~~l-~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~- 623 (1134)
+|+|-+.++ |+++. |++|.+||+++. +++.++.+|.+ .|..+.|+|.. ..|++++.|+.+.+||+..-...
T Consensus 279 ~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 279 AFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred EeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 999976655 45554 888999999974 57889999988 89999999987 56777889999999999752221
Q ss_pred -----------EEEeCCCCCCCcceEEEccCCC-EEEEEeCCCcEEEEECCCc
Q 001160 624 -----------TTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 624 -----------~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~dg~i~iw~~~~~ 664 (1134)
..+...+|...|..+.|+|+.. .+++++.|+.+.||.+...
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 1244445677899999999665 5678889999999998643
No 131
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.5e-23 Score=193.45 Aligned_cols=252 Identities=17% Similarity=0.263 Sum_probs=202.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC--CCCE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 422 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp--dg~~ 422 (1134)
|++.|..+...=-|+ .||+++.|++|+|+.+.++.... ....|.||.++|..++|.. -|.+
T Consensus 10 H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~i 72 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGTI 72 (299)
T ss_pred hhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCcE
Confidence 778888887777787 58899999999999998765311 1123789999999999987 8999
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC-e--eeEEecCCCCC
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-R--KQYTFEGHEAP 499 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~-~--~~~~~~~h~~~ 499 (1134)
||+++.||.|.||.-.++ ...+..+...|...|++++|.|.+..+.|+.++.||.|.|.+..+. . ..+....|.-.
T Consensus 73 LAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG 151 (299)
T ss_pred eeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence 999999999999999887 4445557778999999999999988889999999999999988754 2 22345679999
Q ss_pred eEEEEeeccCC-c-----------cEEEEEecCCeEEEEEccCCCce--eEecCCCCcEEEEEECCCC----CEEEEEee
Q 001160 500 VYSVCPHHKES-I-----------QFIFSTAIDGKIKAWLYDYLGSR--VDYDAPGNWCTMMAYSADG----TRLFSCGT 561 (1134)
Q Consensus 500 v~~i~~~~~~~-~-----------~~l~s~~~d~~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~~~----~~l~~~~~ 561 (1134)
|++++|.|..- | ..|++|+.|+.|++|+.++.+-. ..+..|...|..++|.|.- .++++|+.
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence 99999988621 1 57999999999999999876433 3578899999999999975 46788874
Q ss_pred CCCCCCcEEEEeCCCC--eeEEE-ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 001160 562 SKEGESHLVEWNESEG--AIKRT-YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~--~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 619 (1134)
|+++.||-.+.. ....+ +..... .+..++|+..|+.|++++.|+.|.+|.-..
T Consensus 232 ----Dg~viIwt~~~e~e~wk~tll~~f~~-~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 232 ----DGTVIIWTKDEEYEPWKKTLLEEFPD-VVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ----CCcEEEEEecCccCcccccccccCCc-ceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 888999976521 11122 222333 789999999999999999999999997553
No 132
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4e-22 Score=193.79 Aligned_cols=294 Identities=12% Similarity=0.178 Sum_probs=222.0
Q ss_pred cceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEE
Q 001160 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1134)
Q Consensus 336 ~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~ 415 (1134)
|.++-.++.+.. -.|+.||+.|. +||+|..||.|.|||+.|...-. ++.+|..+|+|++
T Consensus 14 PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~sl~ 72 (405)
T KOG1273|consen 14 PEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITSLC 72 (405)
T ss_pred hHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchhh-------------------hhhccccceeEEE
Confidence 445566777665 88999999997 89999999999999999865332 3789999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecC
Q 001160 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1134)
Q Consensus 416 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 495 (1134)
||+||+.|++++.|..|.+||+..|..+++. ....+|+.+.|.|-..+..+++-- +..-.+-++..++.. .+..
T Consensus 73 WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~~-~~sp~vi~~s~~~h~-~Lp~ 146 (405)
T KOG1273|consen 73 WSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVATIM-EESPVVIDFSDPKHS-VLPK 146 (405)
T ss_pred ecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEEEe-cCCcEEEEecCCcee-eccC
Confidence 9999999999999999999999999877643 257899999999987764444433 334555555543221 1111
Q ss_pred -CCCCeE----EEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCC-CcEEEEEECCCCCEEEEEeeCCCCCCcE
Q 001160 496 -HEAPVY----SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1134)
Q Consensus 496 -h~~~v~----~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1134)
..+... +..| +..|+++++|...|.+.++|..+.+++..+.... ..|..+.++..|+.++..+. |..|
T Consensus 147 d~d~dln~sas~~~f--dr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvI 220 (405)
T KOG1273|consen 147 DDDGDLNSSASHGVF--DRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVI 220 (405)
T ss_pred CCccccccccccccc--cCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceE
Confidence 111111 1123 4456999999999999999999999888777766 78999999999999998875 8889
Q ss_pred EEEeCCC-------Cee--EEEecCc-cCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCcceE
Q 001160 570 VEWNESE-------GAI--KRTYSGF-RKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1134)
Q Consensus 570 ~~wd~~~-------~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1134)
+.|+++. +++ .+.+..- ....-.+++|+.+|.++++++ .-..++||....|.+++.+.+..+. ....+
T Consensus 221 R~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~DV 299 (405)
T KOG1273|consen 221 RTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLDV 299 (405)
T ss_pred EEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-heeec
Confidence 9999762 111 1111110 111456789999999998876 4567999999999999999877643 56788
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 639 RFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 639 ~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.|+|-...+++- ..|.+++|.....
T Consensus 300 ~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 300 NWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred ccccceeeeeec-cCCceEEEEeecc
Confidence 999988888877 7789999987543
No 133
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4.8e-22 Score=220.54 Aligned_cols=285 Identities=20% Similarity=0.204 Sum_probs=215.3
Q ss_pred cccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc
Q 001160 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1134)
|....+.+++.|+|..|++++.||.|++|+.......| .. +. .+ ...|.+++.
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P--------------------~t--i~--~~-g~~v~~ia~-- 64 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP--------------------ET--ID--IS-GELVSSIAC-- 64 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC--------------------ch--hh--cc-CceeEEEee--
Confidence 66778999999999999999999999999864321111 00 00 03 556666665
Q ss_pred CCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEE
Q 001160 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 929 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~ 929 (1134)
++.++++|+ +++|.+|.+.++..-..+....-++++++|+. +|.++|.|++|-.|++-++.+......+++|.++|.+
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence 455888888 89999999998876555555677899999999 9999999999999999999999999999999999999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeCCCccee
Q 001160 930 LAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSR 1008 (1134)
Q Consensus 930 l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~~~~~~~ 1008 (1134)
|.|+|.+.+||+.+-||.|++||++++......-...+.........+..++|+|+|..+++ +.|+.|++|+..+-...
T Consensus 144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ 223 (933)
T ss_pred eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence 99999999999999999999999999875543221111111111245678999999665555 89999999999544443
Q ss_pred ccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEE
Q 001160 1009 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALG 1088 (1134)
Q Consensus 1009 ~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~ 1088 (1134)
-......|...+..++|||+|+|||+++.||.|.|||.++-+. |. -...+.+.+|.| +++.+-.-
T Consensus 224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~--------~~~~Vc~~aw~p-~~n~it~~ 288 (933)
T KOG1274|consen 224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HE--------FKRAVCCEAWKP-NANAITLI 288 (933)
T ss_pred eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------cc--------ccceeEEEecCC-CCCeeEEE
Confidence 3333344455599999999999999999999999999998111 11 114566788888 55666555
Q ss_pred eCCCcEEEEe
Q 001160 1089 MSDGAVHVVE 1098 (1134)
Q Consensus 1089 ~~Dg~v~vW~ 1098 (1134)
..-|..-+|.
T Consensus 289 ~~~g~~~~~~ 298 (933)
T KOG1274|consen 289 TALGTLGVSP 298 (933)
T ss_pred eeccccccCh
Confidence 5556555553
No 134
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.3e-22 Score=205.73 Aligned_cols=289 Identities=13% Similarity=0.222 Sum_probs=229.1
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc--eeEecCCCCcEEEEEECCCCC-EEEEEeeCCCCCCcEEEEe
Q 001160 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEWN 573 (1134)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd 573 (1134)
.+.|+++.|+|.. ..+++++.|+++++|.++.... +..+.....+|.+.+|.|+|. .+++++. ...++.||
T Consensus 213 ~~~I~sv~FHp~~--plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r----rky~ysyD 286 (514)
T KOG2055|consen 213 HGGITSVQFHPTA--PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR----RKYLYSYD 286 (514)
T ss_pred cCCceEEEecCCC--ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEeccc----ceEEEEee
Confidence 4789999999987 8999999999999998875443 445566677999999999999 6777764 67799999
Q ss_pred CCCCeeE--EEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEe
Q 001160 574 ESEGAIK--RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1134)
Q Consensus 574 ~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 651 (1134)
+.+.+.. ....++.+..+.....++++++|+..|..|.|.+....+++.+.++...+ .|..++|+.|++.|++.+
T Consensus 287 le~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG---~v~~~~fsSdsk~l~~~~ 363 (514)
T KOG2055|consen 287 LETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG---VVSDFTFSSDSKELLASG 363 (514)
T ss_pred ccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc---EEeeEEEecCCcEEEEEc
Confidence 9987653 34455555578888999999999999999999999999999999998764 579999999999999999
Q ss_pred CCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcc
Q 001160 652 SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGS 731 (1134)
Q Consensus 652 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (1134)
.+|.|.+||+... .++..+..
T Consensus 364 ~~GeV~v~nl~~~-~~~~rf~D---------------------------------------------------------- 384 (514)
T KOG2055|consen 364 GTGEVYVWNLRQN-SCLHRFVD---------------------------------------------------------- 384 (514)
T ss_pred CCceEEEEecCCc-ceEEEEee----------------------------------------------------------
Confidence 9999999999876 33322211
Q ss_pred cccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCC
Q 001160 732 RLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGK 811 (1134)
Q Consensus 732 ~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~ 811 (1134)
+ ..-.-++++.|++|.+|++|+..|.|.|||.+.--..
T Consensus 385 ---------------------~-----------------G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s---- 422 (514)
T KOG2055|consen 385 ---------------------D-----------------GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS---- 422 (514)
T ss_pred ---------------------c-----------------CccceeeeeecCCCceEEeccCcceEEEeccchhhcc----
Confidence 0 0012267889999999999999999999986531110
Q ss_pred cccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe---CCeEEEEECCCCeEEEEecCCC---CceE
Q 001160 812 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPP---PAAT 885 (1134)
Q Consensus 812 ~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~---~~i~ 885 (1134)
...+++.....- ...|+++.|++|++.||.++ ...+++-.+.+......++... +.|+
T Consensus 423 ------------~~PkPik~~dNL----tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vt 486 (514)
T KOG2055|consen 423 ------------TNPKPIKTVDNL----TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVT 486 (514)
T ss_pred ------------CCCCchhhhhhh----heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceE
Confidence 111122211111 67899999999999999998 5779999998887777776543 5689
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEEcC
Q 001160 886 FLAFHPQDNNIIAIGMEDSSVQIYNVR 912 (1134)
Q Consensus 886 ~l~~s~~~~~~lasg~~dg~i~iwd~~ 912 (1134)
|++||| .+.++|.|..+|.|.+|.+.
T Consensus 487 c~aFSP-~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 487 CMAFSP-NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEEecC-CCceEEeecCCCceeeEeec
Confidence 999999 89999999999999999864
No 135
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6.5e-22 Score=203.27 Aligned_cols=291 Identities=16% Similarity=0.232 Sum_probs=221.9
Q ss_pred CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEE-EEeCCCCCCCcceEEEccC
Q 001160 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLT-TVDADGGLPASPRLRFNKE 643 (1134)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~s~d 643 (1134)
...+.+||+++|....++++.....-.++..- .+.+++++. ....+.+|.+....... .+.. ..+|.+++-+|+
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~---Pg~v~al~s~n~ 92 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVL---PGPVHALASSNL 92 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhccc---ccceeeeecCCC
Confidence 45599999999999999987622122222211 235666655 55679999987765544 2222 236899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccC
Q 001160 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (1134)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1134)
|.+|+.|+..|.|++|.+.+| .++..+.+
T Consensus 93 G~~l~ag~i~g~lYlWelssG-~LL~v~~a-------------------------------------------------- 121 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSG-ILLNVLSA-------------------------------------------------- 121 (476)
T ss_pred ceEEEeecccCcEEEEEeccc-cHHHHHHh--------------------------------------------------
Confidence 999999999999999999999 66665543
Q ss_pred ccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeeccc
Q 001160 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQR 803 (1134)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~ 803 (1134)
|...|+++.|+.||..+++++.||.|.+|.+..
T Consensus 122 -----------------------------------------------HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 122 -----------------------------------------------HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD 154 (476)
T ss_pred -----------------------------------------------hccceeEEEEeCCCcEEEecCCCccEEEEEEEe
Confidence 567789999999999999999999999999754
Q ss_pred ccCCCCCCcccccCcccccCCCC--CccccccCCCCCCCCceEEEEeccC--CCEEEEEe-CCeEEEEECCCCeEEEEec
Q 001160 804 TERNPSGKATANVAPQLWQPPSG--TLMTNDINESKPTEESAACIALSKN--DSYVMSAS-GGKVSLFNMMTFKVMTMFM 878 (1134)
Q Consensus 804 ~~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~~~~~h~~~~i~~~~~s~d--g~~la~~s-dg~i~vwd~~~~~~~~~~~ 878 (1134)
.- +.... ......+.. | .-+|+++...+. ..++++++ |.++++||+..+.++.++.
T Consensus 155 lv----------------~a~~~~~~~p~~~f~~--H-tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~ 215 (476)
T KOG0646|consen 155 LV----------------SADNDHSVKPLHIFSD--H-TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT 215 (476)
T ss_pred ec----------------ccccCCCccceeeecc--C-cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe
Confidence 21 11111 111112333 7 899999988765 45888988 9999999999999988877
Q ss_pred CCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC----------------ceEEEEecCccc--ceEEEEEecCCCEEE
Q 001160 879 SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV----------------DEVKTKLKGHQN--RITGLAFSPTLNALV 940 (1134)
Q Consensus 879 ~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~----------------~~~~~~l~~h~~--~i~~l~~s~d~~~l~ 940 (1134)
....+.+++.+| ..+.+.+|+.+|.|.+.++.. +..+..+.||.+ .|+|++++-||.+|+
T Consensus 216 -fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 216 -FPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred -cCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 566899999999 899999999999999987643 234567889999 999999999999999
Q ss_pred EEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCc
Q 001160 941 SSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT 987 (1134)
Q Consensus 941 s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~ 987 (1134)
+|+.||+|+|||+.+.++++.... .. ++|+.+.+.|--+
T Consensus 294 SGd~dg~VcvWdi~S~Q~iRtl~~--~k------gpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQCIRTLQT--SK------GPVTNLQINPLER 332 (476)
T ss_pred eeCCCCCEEEEecchHHHHHHHhh--hc------cccceeEeecccc
Confidence 999999999999999886554321 11 4678888766533
No 136
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=3.1e-21 Score=204.97 Aligned_cols=274 Identities=12% Similarity=0.146 Sum_probs=204.6
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe
Q 001160 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
.|..++|-|||..+++.+ +..+.|||...|..+.+ +++|.+.|.|++||.||+++|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 789999999998776655 56899999999998875 899999999999999999999999
Q ss_pred CCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeec
Q 001160 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 507 (1134)
.|..|.+|+-+-...++ ..|.+.|.|+.|+|-.. .++||+-. ..-+|........ ..+ ....+.+++|
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~-K~k-ss~R~~~CsW-- 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVS-KHK-SSSRIICCSW-- 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHH-hhh-hheeEEEeee--
Confidence 99999999976544332 26999999999999988 68888744 4678886544322 111 2345666666
Q ss_pred cCCccEEEEEecCCeEEEEEccCCCceeEec---CCCCcEEEEEECCCCC-----EEEEEeeCCCCCCcEEEEeCCCCee
Q 001160 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---APGNWCTMMAYSADGT-----RLFSCGTSKEGESHLVEWNESEGAI 579 (1134)
Q Consensus 508 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~-----~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1134)
..||++++.|-.+|+|.+-+-. +++...+. +...+|.+++|+|... .+++.. -..++..+.+. |+.
T Consensus 141 tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D----W~qTLSFy~Ls-G~~ 214 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD----WGQTLSFYQLS-GKQ 214 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe----ccceeEEEEec-cee
Confidence 5577999999999999987543 34433333 3566999999999642 233331 13345555443 333
Q ss_pred EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEE
Q 001160 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1134)
Q Consensus 580 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw 659 (1134)
+..-+.-.- ...|+++.++|.+++.||.|+.+.+|.. .|-.+.++...+ ..|+.++..|+++.++.|..||+|.-|
T Consensus 215 Igk~r~L~F-dP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D--~WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 215 IGKDRALNF-DPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQD--SWIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred ecccccCCC-CchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccc--eeEEEEEEccCCceEEEEEccCeeehh
Confidence 332221111 3567899999999999999999999964 566666665433 489999999999999999999999999
Q ss_pred ECCCc
Q 001160 660 ANSDG 664 (1134)
Q Consensus 660 ~~~~~ 664 (1134)
++...
T Consensus 291 Nl~fS 295 (1081)
T KOG1538|consen 291 NLIFS 295 (1081)
T ss_pred hhHHh
Confidence 87543
No 137
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4e-22 Score=203.96 Aligned_cols=286 Identities=12% Similarity=0.214 Sum_probs=233.4
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccc--cccccceeeccccccccccccccccCCcCeEEEEEcCCCC-E
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRER--LAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-M 422 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~-~ 422 (1134)
.+.|++|.|+|..+ +|.+++.||+++||.+..... +.+ +.-...+|.+.+|.|+|. .
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS-------------------~~l~~fPi~~a~f~p~G~~~ 272 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQS-------------------IHLEKFPIQKAEFAPNGHSV 272 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhee-------------------eeeccCccceeeecCCCceE
Confidence 57899999999998 788899999999999875432 221 222456899999999999 9
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEeccc-CCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeE
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 501 (1134)
+++++.....+.||+.+.+..+ ...+.++. ..+.....+++++ +|+..+..|.|.+....+++.+.+++ -.+.|.
T Consensus 273 i~~s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~ 348 (514)
T KOG2055|consen 273 IFTSGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVS 348 (514)
T ss_pred EEecccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEe
Confidence 9999999999999999876543 22344554 3567788899999 89999999999999999999998886 678899
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCC-cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC----
Q 001160 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE---- 576 (1134)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---- 576 (1134)
.++|+. ++..|++++.+|.|.+||++...+...+...++ .-++++.++++.++|+|+. .|.|.|||..+
T Consensus 349 ~~~fsS--dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s 422 (514)
T KOG2055|consen 349 DFTFSS--DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFAS 422 (514)
T ss_pred eEEEec--CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhcc
Confidence 999974 558999999999999999999888877765544 4578889999999999974 88899999653
Q ss_pred --CeeEEEecCccCcceEEEEEeCCCCEEEEEe--CCCeEEEEECCCCeeEEEEeCC-CCCCCcceEEEccCCCEEEEEe
Q 001160 577 --GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKEGSLLAVTT 651 (1134)
Q Consensus 577 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~ 651 (1134)
.+++..+..-.. .|++++|++|++.|+.+| .+..+++-.+.+......++.. .....|+|++|+|.+.++|.|.
T Consensus 423 ~~PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 423 TNPKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred CCCCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence 456666655544 799999999999988877 6778999998887766666433 2345789999999999999999
Q ss_pred CCCcEEEEECC
Q 001160 652 SDNGIKILANS 662 (1134)
Q Consensus 652 ~dg~i~iw~~~ 662 (1134)
.+|.+.+|.+.
T Consensus 502 e~grv~l~kL~ 512 (514)
T KOG2055|consen 502 EAGRVHLFKLH 512 (514)
T ss_pred CCCceeeEeec
Confidence 99999999863
No 138
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.1e-22 Score=194.57 Aligned_cols=253 Identities=13% Similarity=0.233 Sum_probs=196.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeee
Q 001160 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1134)
Q Consensus 411 V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~ 490 (1134)
-.|+.||+.|.+||+|+.||.|.|||+.+...-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976554 6789999999999999999 8999999999999999999999
Q ss_pred EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCC----cEEEEEECCCCCEEEEEeeCCCCC
Q 001160 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN----WCTMMAYSADGTRLFSCGTSKEGE 566 (1134)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1134)
+.+. ...+|+.+.|+|......+++ -.+..-.+-++..+.....-....+ .-.+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~-~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVAT-IMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEE-EecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9886 788999999999876444444 3444455555554322221111111 1223468999999999974 8
Q ss_pred CcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCC-------ee--EEEEeCCCCCCCcce
Q 001160 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-------NM--LTTVDADGGLPASPR 637 (1134)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~--~~~~~~~~~~~~v~~ 637 (1134)
|.+.++|..+.+++..++......|..+.++..|.+++.-+.|+.||.|++..- ++ .+.++.--....-.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 889999999999999888766447899999999999999999999999998631 11 111111111123468
Q ss_pred EEEccCCCEEEEEeC-CCcEEEEECCCchhhhhhhcCCc
Q 001160 638 LRFNKEGSLLAVTTS-DNGIKILANSDGVRLLRMLEGRA 675 (1134)
Q Consensus 638 ~~~s~d~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~ 675 (1134)
++|+.+|.+++.++. ...++||....| .+++.+.|..
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~k 292 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTK 292 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCc
Confidence 899999999988775 568999999888 7788777754
No 139
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=2e-20 Score=206.69 Aligned_cols=292 Identities=13% Similarity=0.152 Sum_probs=215.9
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEE-EEEecCCeEEEEEccCCCceeEecCCCCcEEEE
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~ 547 (1134)
++++++.|+.|++||+.+++.+..+..+.. +.+++|++++ ..+ ++++.++.|++||..+++....+..+ ..+..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~ 78 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDG--KLLYVCASDSDTIQVIDLATGEVIGTLPSG-PDPELF 78 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCC--CEEEEEECCCCeEEEEECCCCcEEEeccCC-CCccEE
Confidence 688999999999999999999888876544 6778887754 555 66778999999999987766555443 335678
Q ss_pred EECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCC-eEEEEECCCCeeEEEE
Q 001160 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-QIKFWDMDNMNMLTTV 626 (1134)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~ 626 (1134)
+|+|+++.+++++. .++.+.+||+.+++.+..+.... .+.+++|+|+++.+++++.++ .+.+||..+++....+
T Consensus 79 ~~~~~g~~l~~~~~---~~~~l~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 79 ALHPNGKILYIANE---DDNLVTVIDIETRKVLAEIPVGV--EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred EECCCCCEEEEEcC---CCCeEEEEECCCCeEEeEeeCCC--CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 99999998876542 36789999999988887776433 467899999999999888664 5778899888776655
Q ss_pred eCCCCCCCcceEEEccCCCEEEEEe-CCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccc
Q 001160 627 DADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAA 705 (1134)
Q Consensus 627 ~~~~~~~~v~~~~~s~d~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1134)
.... ....++|++++++|++++ .++.|++||+.++ +....+.
T Consensus 154 ~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~--------------------------------- 196 (300)
T TIGR03866 154 LVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKIT--------------------------------- 196 (300)
T ss_pred EcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeee---------------------------------
Confidence 4322 347799999999886554 5899999998766 1111100
Q ss_pred cCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCc
Q 001160 706 IAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGL 785 (1134)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 785 (1134)
+...+.
T Consensus 197 --------------------------------------------------------------------------~~~~~~ 202 (300)
T TIGR03866 197 --------------------------------------------------------------------------FEIPGV 202 (300)
T ss_pred --------------------------------------------------------------------------eccccc
Confidence 000000
Q ss_pred ceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe--CCeE
Q 001160 786 SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKV 863 (1134)
Q Consensus 786 ~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s--dg~i 863 (1134)
... ......++|+||+++++++. ++.+
T Consensus 203 -----------------------------------------------~~~----~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 203 -----------------------------------------------HPE----AVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred -----------------------------------------------ccc----cCCccceEECCCCCEEEEEcCCCCeE
Confidence 000 11223577889998765543 6789
Q ss_pred EEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEE-eCCCcEEEEEcCCceEEEEecCcccceEEEEEec
Q 001160 864 SLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG-MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 934 (1134)
Q Consensus 864 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg-~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~ 934 (1134)
.+||+.+++....+. +...+.+++|+| ++++|+++ ..+|.|.+||+.+++++..+... ...++++++|
T Consensus 232 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 232 AVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 999999888776654 445789999999 88888776 56899999999999999998754 5568888875
No 140
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=9e-22 Score=201.36 Aligned_cols=294 Identities=15% Similarity=0.224 Sum_probs=224.7
Q ss_pred CCCCeeEEEEecCCC-eEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC-CCCE
Q 001160 345 QGSNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLM 422 (1134)
Q Consensus 345 h~~~V~~v~~spdg~-~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp-dg~~ 422 (1134)
+.++|++++|+|.-. .++|+|+..|+|-+||+.+.+......+ ++..|..+|.++.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~---------------~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVY---------------LFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceE---------------EeccCCccccceEecCCChhh
Confidence 678999999999876 7999999999999999975554433211 3678999999999999 5568
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee-eEEecCCCCCeE
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVY 501 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~-~~~~~~h~~~v~ 501 (1134)
+.+.+.||+|++-|++++.. .....+......+..+.|+.+.. .++.++.=|...+||++++.. ...+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 99999999999999987532 22223333455678889988888 677777777999999998665 556677999999
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEccCCCce----eEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC--
Q 001160 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-- 575 (1134)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-- 575 (1134)
+++++|..+ .++++++.|++.+|||++..... .....|...|.++.|||.+-.|++.+. |..|+|||..
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IRv~dss~~ 401 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIRVFDSSCI 401 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceEEeecccc
Confidence 999999876 79999999999999999875443 345568889999999999888888764 7789999983
Q ss_pred --CCeeEEEecCccCc----ceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcce-EEEccCCC-EE
Q 001160 576 --EGAIKRTYSGFRKR----SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR-LRFNKEGS-LL 647 (1134)
Q Consensus 576 --~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~-~~~s~d~~-~l 647 (1134)
...+..++...... ...-..|.|+.+++++|-.-..|-|+|-..++.+..+..+... .|.+ ..|+|-+. ++
T Consensus 402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~HP~~~~~~ 480 (498)
T KOG4328|consen 402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFHPMRDTLA 480 (498)
T ss_pred cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeeccccccee
Confidence 33333333322110 2334679999999999999999999999999877776544322 3433 47999777 55
Q ss_pred EEEeCCCcEEEEECC
Q 001160 648 AVTTSDNGIKILANS 662 (1134)
Q Consensus 648 ~~~~~dg~i~iw~~~ 662 (1134)
+.++..|.|+||-..
T Consensus 481 aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 481 AGGNSSGKIYVFTNK 495 (498)
T ss_pred ccCCccceEEEEecC
Confidence 555568899998654
No 141
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.1e-21 Score=204.57 Aligned_cols=317 Identities=16% Similarity=0.221 Sum_probs=231.9
Q ss_pred eEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEE
Q 001160 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526 (1134)
Q Consensus 447 ~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~w 526 (1134)
..+.||.+.|.++...|.|. +|++|+.||+|+||.+.+|+|++++. ..+.|.|++|+|..+...|+++-... +.+-
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~iv 469 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIV 469 (733)
T ss_pred eeEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEe
Confidence 36779999999999999999 89999999999999999999999886 56789999999998866666655544 5555
Q ss_pred EccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe----eEEEecCccCcceEEEEEeCCCCE
Q 001160 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTRNR 602 (1134)
Q Consensus 527 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~ 602 (1134)
+..-+..+... +....|+.+-.....+..+..|.-.... -++..-.|.. .|+.+.|+..|.|
T Consensus 470 np~~G~~~e~~-------------~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k-~i~~vtWHrkGDY 535 (733)
T KOG0650|consen 470 NPIFGDRLEVG-------------PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPK-SIRQVTWHRKGDY 535 (733)
T ss_pred Cccccchhhhc-------------chhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCC-ccceeeeecCCce
Confidence 44332111110 1111222221111234567778654211 1223333444 8999999999999
Q ss_pred EEEEe---CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCccccc
Q 001160 603 FLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKN 679 (1134)
Q Consensus 603 l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 679 (1134)
|++.. ....|.|+++.......-+... ...|.++.|+|...+|++++.. .|+|||+... .+++.+..
T Consensus 536 latV~~~~~~~~VliHQLSK~~sQ~PF~ks--kG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kq-elvKkL~t------ 605 (733)
T KOG0650|consen 536 LATVMPDSGNKSVLIHQLSKRKSQSPFRKS--KGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQ-ELVKKLLT------ 605 (733)
T ss_pred EEEeccCCCcceEEEEecccccccCchhhc--CCceeEEEecCCCceEEEEecc-ceEEEehhHH-HHHHHHhc------
Confidence 99865 4467999999876655444332 3468999999999888887764 8999998765 44443321
Q ss_pred CCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCcc
Q 001160 680 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 759 (1134)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~ 759 (1134)
T Consensus 606 -------------------------------------------------------------------------------- 605 (733)
T KOG0650|consen 606 -------------------------------------------------------------------------------- 605 (733)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCC
Q 001160 760 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839 (1134)
Q Consensus 760 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~ 839 (1134)
+
T Consensus 606 ---------------------------------------------------------------------------g---- 606 (733)
T KOG0650|consen 606 ---------------------------------------------------------------------------G---- 606 (733)
T ss_pred ---------------------------------------------------------------------------C----
Confidence 0
Q ss_pred CCceEEEEeccCCCEEEEEe-CCeEEEEECCC-CeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcC-----
Q 001160 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMT-FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR----- 912 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~----- 912 (1134)
...|..++++|.|..|+.|+ |+.+..||++- .++.+++..|...+++++|++ .-.++|+|+.||++.|+--.
T Consensus 607 ~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl 685 (733)
T KOG0650|consen 607 SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDL 685 (733)
T ss_pred CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhh
Confidence 23356677777777777777 78888888864 356778888999999999999 88999999999999998532
Q ss_pred -Cc---eEEEEecCcccc----eEEEEEecCCCEEEEEcCCCcEEEE
Q 001160 913 -VD---EVKTKLKGHQNR----ITGLAFSPTLNALVSSGADAQLCMW 951 (1134)
Q Consensus 913 -~~---~~~~~l~~h~~~----i~~l~~s~d~~~l~s~~~D~~i~iW 951 (1134)
.. -.++.|++|... |..+.|+|...+|+|+|.||+|++|
T Consensus 686 ~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 686 LQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 11 245778899876 8999999999999999999999998
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.8e-23 Score=225.10 Aligned_cols=235 Identities=17% Similarity=0.321 Sum_probs=213.9
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEEC
Q 001160 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~ 484 (1134)
..|...|.|+..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||+
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWDL 99 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeeeh
Confidence 3588889999987788999999999999999987765444 6789999999999999988 8999999999999999
Q ss_pred CCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCC
Q 001160 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1134)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1134)
+.++.++++.+|...+.++.|+|.. .++++|+.|+.+++||++..++...+.+|...+..+.|+|+|++++.++.
T Consensus 100 eeAk~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e--- 174 (825)
T KOG0267|consen 100 EEAKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE--- 174 (825)
T ss_pred hhhhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC---
Confidence 9999999999999999999999976 88999999999999999999999999999999999999999999999874
Q ss_pred CCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCC
Q 001160 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1134)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 644 (1134)
|..+++||...|+....|..|.. .+.++.|+|..-.++.||.|+++++||+++.+.+...... ...|.+.+|+|++
T Consensus 175 -d~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~ 250 (825)
T KOG0267|consen 175 -DNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDG 250 (825)
T ss_pred -cceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCCc
Confidence 78899999999999999999987 8999999998888888999999999999998888776654 4579999999999
Q ss_pred CEEEEEeCC
Q 001160 645 SLLAVTTSD 653 (1134)
Q Consensus 645 ~~l~~~~~d 653 (1134)
..+++|-..
T Consensus 251 ~~~~~G~q~ 259 (825)
T KOG0267|consen 251 KIVLSGEQI 259 (825)
T ss_pred eeeecCchh
Confidence 998887665
No 143
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=2.3e-20 Score=206.21 Aligned_cols=275 Identities=9% Similarity=0.062 Sum_probs=203.7
Q ss_pred EEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEE-EEEeCCCeEEEEEcCC
Q 001160 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYNP 439 (1134)
Q Consensus 361 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~l-as~~~dg~i~iwd~~~ 439 (1134)
++++++.|+.|.+||+.+++.+.. +..+ ..+.+++|+|+|+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 788899999999999998876542 2333 346789999999977 5667889999999998
Q ss_pred CCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEec
Q 001160 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI 519 (1134)
Q Consensus 440 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~ 519 (1134)
++... .+..+. .+..++|+|+++. ++++++.|+.|++||+.+++.+..+.. ...+.+++|+|++ .++++++.
T Consensus 63 ~~~~~---~~~~~~-~~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg--~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGP-DPELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDG--KIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCC-CccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCC--CEEEEEec
Confidence 76544 343343 3567899999984 345566789999999999888877753 3346788887754 78888877
Q ss_pred CC-eEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccC------cceE
Q 001160 520 DG-KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK------RSLG 592 (1134)
Q Consensus 520 d~-~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~ 592 (1134)
++ .+.+||..+........ ......+++|+|+++++++++. .++.|.+||+.+++.+..+..+.. ....
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 56778987765544333 2334578999999998876542 367899999999988776653211 0234
Q ss_pred EEEEeCCCCEEEE-EeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEE-eCCCcEEEEECCCchhhhhh
Q 001160 593 VVQFDTTRNRFLA-AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSDNGIKILANSDGVRLLRM 670 (1134)
Q Consensus 593 ~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~~dg~i~iw~~~~~~~~~~~ 670 (1134)
.++|+|+++++++ .+.++.+.+||..+++....+... ..+.+++|+|+|++|+++ +.++.|.+||+.++ +.+..
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~ 286 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKS 286 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence 5889999998655 456678999999998877665422 257899999999999876 45899999999988 44444
Q ss_pred h
Q 001160 671 L 671 (1134)
Q Consensus 671 ~ 671 (1134)
+
T Consensus 287 ~ 287 (300)
T TIGR03866 287 I 287 (300)
T ss_pred E
Confidence 4
No 144
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=4.2e-21 Score=184.83 Aligned_cols=304 Identities=15% Similarity=0.196 Sum_probs=219.5
Q ss_pred cccccceEEEEEec-CCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEE
Q 001160 769 SIAASKVVRLIYTN-SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 847 (1134)
Q Consensus 769 ~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~ 847 (1134)
..|.+.|.++.+.+ .|+++++|+.||.+.+||++..........+.. ..++........| ...|.++.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k----------~~c~v~~~h~~~H-ky~iss~~ 108 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAK----------HKCIVAKQHENGH-KYAISSAI 108 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeh----------eeeeccccCCccc-eeeeeeeE
Confidence 34778899999886 689999999999999999975332111111110 0011111122347 89999999
Q ss_pred ecc-CCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCC--CCcEEEEEeCCCcEEEEEcCCceEEEEecCc
Q 001160 848 LSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ--DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH 923 (1134)
Q Consensus 848 ~s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~--~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h 923 (1134)
|-| |.-.+.+++ |.+++|||..+.+....|+ -.+.|.+-++||- ..-++|+|..|-.|++-|+.+|.+-..|.||
T Consensus 109 WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGH 187 (397)
T KOG4283|consen 109 WYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGH 187 (397)
T ss_pred EeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccc
Confidence 998 666777777 9999999999998888887 4567888788772 1347889999999999999999999999999
Q ss_pred ccceEEEEEecCCC-EEEEEcCCCcEEEEeCCCcccccceeeecCCC--------CCCCCcCceEEEECCCCcEEEE-EE
Q 001160 924 QNRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAG--------RQSPLVGETKVQFHNDQTHLLV-VH 993 (1134)
Q Consensus 924 ~~~i~~l~~s~d~~-~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~fspdg~~l~~-~~ 993 (1134)
.+.|.++.|+|... .|+||+.||.|++||+..... ...++....+ .....+.+..++|+.||.++++ +.
T Consensus 188 r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasg-cf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 188 RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASG-CFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred cCceEEEEeccCceeEEEecCCCceEEEEEeecccc-eeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence 99999999999765 578999999999999976411 0111111111 1111257899999999999999 78
Q ss_pred CCeEEEEeC-CCcc-eeccCCCCCCCC----CeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccC
Q 001160 994 ESQISVYDS-KLEC-SRSWSPKDALPA----PISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVS 1067 (1134)
Q Consensus 994 d~~v~vwd~-~~~~-~~~~~~~~~h~~----~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 1067 (1134)
|..+++|+. ++.. ++.+.+ ..|+. .+. +. +.+...++.--.++.+.++++-.|..+..+..|
T Consensus 267 d~r~r~wn~~~G~ntl~~~g~-~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h--------- 334 (397)
T KOG4283|consen 267 DDRIRVWNMESGRNTLREFGP-IIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH--------- 334 (397)
T ss_pred ccceEEeecccCccccccccc-ccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecc---------
Confidence 999999999 4332 222211 11111 111 23 445555555667799999999999999988755
Q ss_pred CCCccEEEeecCCCCCEEEEEeCCCcEEEEec
Q 001160 1068 NTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1099 (1134)
Q Consensus 1068 ~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~ 1099 (1134)
-....+++|.| +-+...+|..|+.+..|.+
T Consensus 335 -~k~i~c~~~~~-~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 335 -LKRINCAAYRP-DFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred -cceeeEEeecC-chhhhhccccCCccccccc
Confidence 24566788888 7788999999999999986
No 145
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6.3e-21 Score=194.75 Aligned_cols=247 Identities=12% Similarity=0.155 Sum_probs=192.7
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCccceeeE------------------EecccCCeeEEEEecCCCcEEEEEEcCCCcEE
Q 001160 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLE------------------IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1134)
Q Consensus 419 dg~~las~~~dg~i~iwd~~~~~~~~~~~~------------------~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~ 480 (1134)
-|+++|.|+.|..|.|||++-...+.+... -.+|+..|.+++|+..-+. .||+||.|.+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence 367999999999999999864333222222 2379999999999988777 899999999999
Q ss_pred EEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEe
Q 001160 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1134)
Q Consensus 481 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1134)
+||+.+|++..++..|.+.|.++.|+|... .+|++|+.|++|.+.|.+........-...+.|..++|.|.....+.++
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p-~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEP-SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCCc-eEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEe
Confidence 999999999999999999999999998865 8999999999999999985333222222355788999999888777666
Q ss_pred eCCCCCCcEEEEeCCC-CeeEEEecCccCcceEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceE
Q 001160 561 TSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1134)
Q Consensus 561 ~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1134)
. .+|+++-+|++. ++++.++..|.+ .|.++++++.. ..+++++.|+.|++|++..-.........-......|.
T Consensus 349 t---ddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~ 424 (463)
T KOG0270|consen 349 T---DDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCF 424 (463)
T ss_pred c---CCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeec
Confidence 4 489999999996 589999999988 99999999866 45777999999999998754432222111112234566
Q ss_pred EEccCC-CEEEEEeCCCcEEEEECCCchhhhhhh
Q 001160 639 RFNKEG-SLLAVTTSDNGIKILANSDGVRLLRML 671 (1134)
Q Consensus 639 ~~s~d~-~~l~~~~~dg~i~iw~~~~~~~~~~~~ 671 (1134)
++.|+- -.++.|+..+.++|||+.+.....+.|
T Consensus 425 ~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~kaF 458 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKAF 458 (463)
T ss_pred ccCCCcceEEEecCccceEEEeecccChhHHHhh
Confidence 777754 467788888899999998884444444
No 146
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.1e-21 Score=211.18 Aligned_cols=297 Identities=11% Similarity=0.181 Sum_probs=226.7
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC-CCCEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLG 424 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp-dg~~la 424 (1134)
+....++...++-..+++.| ...+.||.+........ +.+..-. -..-...+..+.|+. +.++||
T Consensus 39 k~~~nAIs~nr~~~qiv~AG--rs~lklyai~~~~~~~~--~~~~~k~----------kqn~~~S~~DVkW~~~~~NlIA 104 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAG--RSLLKLYAINPNDFSEK--CNHRFKT----------KQNKFYSAADVKWGQLYSNLIA 104 (839)
T ss_pred ccccceEeecCCcceeEEec--ccceeeEeeCcccCCcc--eeeeccc----------ccceeeehhhcccccchhhhhe
Confidence 45677788888887666555 34778887765433211 1111000 001122456778876 678999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1134)
+++..|.|.+||+.....-.....|..|...+.++.|++.... +|++||.||+|++||++..+...++.+....|..+.
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 9999999999999873222333367889999999999998777 899999999999999999998889999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCCC-ceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEe
Q 001160 505 PHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1134)
|+|.. +.+++++.+.|.+++||++... ....+..|.++|.|+.|+|++.+||+||. |+.|+|||..+++.....
T Consensus 184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR----DK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR----DKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC----CccEEEEeccCCCcccee
Confidence 99976 5899999999999999998654 45688899999999999999999999985 788999999877655555
Q ss_pred cCccCcceEEEEEeCCCCE-EEEEe--CCCeEEEEECCCCe-eEEEEeCCCCCCCcceEEEcc-CCCEEEEEeCCCcEEE
Q 001160 584 SGFRKRSLGVVQFDTTRNR-FLAAG--DEFQIKFWDMDNMN-MLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 658 (1134)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~-l~~~~--~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~i 658 (1134)
..+...++.++.|-|...+ |++++ .|-.|+|||++..- +..++..| ...++.++|.. |...+.+++.||+|..
T Consensus 259 tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 259 TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc--CccccceeccCCCceeeEeecCccHHHH
Confidence 5555558999999998865 45544 78899999998644 45566655 44688899976 5567888888888765
Q ss_pred EECCCc
Q 001160 659 LANSDG 664 (1134)
Q Consensus 659 w~~~~~ 664 (1134)
-..++.
T Consensus 337 h~~kna 342 (839)
T KOG0269|consen 337 HLFKNA 342 (839)
T ss_pred hhhhcc
Confidence 444443
No 147
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=8.5e-21 Score=201.87 Aligned_cols=291 Identities=14% Similarity=0.133 Sum_probs=208.3
Q ss_pred CcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCe
Q 001160 784 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGK 862 (1134)
Q Consensus 784 g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~ 862 (1134)
.+.|+.+..+|.|.++|.....+.+ +..+ .... ..| .+.|..+.|.|....|++++ |.+
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~---------------ee~~--lk~~--~aH-~nAifDl~wapge~~lVsasGDsT 123 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRL---------------EERQ--LKKP--LAH-KNAIFDLKWAPGESLLVSASGDST 123 (720)
T ss_pred cceEEEecCCCceeeecchhhhcch---------------hhhh--hccc--ccc-cceeEeeccCCCceeEEEccCCce
Confidence 3457777888999999875433311 1110 1112 238 99999999999777888887 899
Q ss_pred EEEEECCCCeEEEE--ecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce-------------------------
Q 001160 863 VSLFNMMTFKVMTM--FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE------------------------- 915 (1134)
Q Consensus 863 i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~------------------------- 915 (1134)
+++||+++.++... +.+|...|.+++|.|.+...+++|+.||.|.|||+.-..
T Consensus 124 ~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~ 203 (720)
T KOG0321|consen 124 IRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPL 203 (720)
T ss_pred eeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchh
Confidence 99999999998877 899999999999999888999999999999999975321
Q ss_pred --EEEEecCcccceEE---EEEecCCCEEEEEcC-CCcEEEEeCCCcccccc---eeeecCCCCCCCCcCceEEEECCCC
Q 001160 916 --VKTKLKGHQNRITG---LAFSPTLNALVSSGA-DAQLCMWSIDKWEKLKS---RFIQAPAGRQSPLVGETKVQFHNDQ 986 (1134)
Q Consensus 916 --~~~~l~~h~~~i~~---l~~s~d~~~l~s~~~-D~~i~iWd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~fspdg 986 (1134)
.+....+|...|.+ +.+..|...|||+|. |+.|+|||+......-. ........+.....++.++.....|
T Consensus 204 ~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG 283 (720)
T KOG0321|consen 204 KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG 283 (720)
T ss_pred hccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence 11122345555666 666789999999998 99999999987543211 1111122223334667788888888
Q ss_pred cEEEE-EECCeEEEEeCCCcceeccCCCCCCCCC--eEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccc
Q 001160 987 THLLV-VHESQISVYDSKLECSRSWSPKDALPAP--ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPT 1063 (1134)
Q Consensus 987 ~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~--v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~ 1063 (1134)
.+|.+ +.|+.|++|++....+.......++... -..-..|||+.+|++|+.|...++|.+.+.+.--.+
T Consensus 284 t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~-------- 355 (720)
T KOG0321|consen 284 TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL-------- 355 (720)
T ss_pred CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhh--------
Confidence 88887 8999999999943333322222222111 112235899999999999999999999986543222
Q ss_pred cccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1064 YAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
..+|...+.+++|.|..-.-++++++|..+++|++.++-
T Consensus 356 -l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 356 -LLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred -hhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 125567788888888766778888999999999996543
No 148
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=4.6e-20 Score=179.34 Aligned_cols=259 Identities=13% Similarity=0.162 Sum_probs=190.4
Q ss_pred CCCCceEEEEeccCCCEEEEEe-CCeEEEEECC----CCeEEEEecCCCCceEEEEEc-CCCCcEEEEEeCCCcEEEEEc
Q 001160 838 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMM----TFKVMTMFMSPPPAATFLAFH-PQDNNIIAIGMEDSSVQIYNV 911 (1134)
Q Consensus 838 h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~----~~~~~~~~~~~~~~i~~l~~s-~~~~~~lasg~~dg~i~iwd~ 911 (1134)
| ..-|.++.|.+-|+.+|+++ |++++|||.. +..+....+.|.+.|..+.|. |.=|+.+|+++.|+++.||+-
T Consensus 12 h-~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 12 H-KDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred C-cceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 7 88899999999999999999 9999999964 346777888999999999995 445899999999999999985
Q ss_pred CC---------ceEEEEecCcccceEEEEEecC--CCEEEEEcCCCcEEEEeCCCcccccceeee-------cCCCCCCC
Q 001160 912 RV---------DEVKTKLKGHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKSRFIQ-------APAGRQSP 973 (1134)
Q Consensus 912 ~~---------~~~~~~l~~h~~~i~~l~~s~d--~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~-------~~~~~~~~ 973 (1134)
.. .....++....+.|+.+.|.|. |-.||+++.||.+|||+.-..-.++...+. .+.+..
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~-- 168 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN-- 168 (361)
T ss_pred cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc--
Confidence 21 2344567777889999999995 678999999999999987543322221111 111111
Q ss_pred CcCceEEEECCCC---cEEEEEECC------eEEEEeC--CCcceeccCCCCCCCCCeEEEEEccC-C---CEEEEEecC
Q 001160 974 LVGETKVQFHNDQ---THLLVVHES------QISVYDS--KLECSRSWSPKDALPAPISSAIYSCD-G---LLVYAGFCD 1038 (1134)
Q Consensus 974 ~~~v~~~~fspdg---~~l~~~~d~------~v~vwd~--~~~~~~~~~~~~~h~~~v~~v~~s~d-g---~~l~~~~~d 1038 (1134)
...-.++.|+|.. .+||++.+. .+.||.. .++.........+|..+|+.++|.|+ | .+||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 1355788888643 577888765 8999988 55455555555688999999999996 3 369999999
Q ss_pred CcEEEEeCCC------------cceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1039 GAIGVFDAET------------LRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1039 g~I~vwd~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
| |+||.+.. +..+..+.......-. .|...+-.+.|.- -|..|++.+.||+|++|..+-..
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~--~H~~~VWrv~wNm-tGtiLsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD--DHNGEVWRVRWNM-TGTILSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc--CCCCceEEEEEee-eeeEEeecCCCceeeehhhhhhh
Confidence 9 99999873 2222233322222222 3334455777776 57999999999999999976433
No 149
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=2.2e-21 Score=210.94 Aligned_cols=249 Identities=12% Similarity=0.204 Sum_probs=197.9
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC-CCCEEEEE
Q 001160 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLGVA 426 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp-dg~~las~ 426 (1134)
....|+|+.--..+||+++..|.|.+||+.....- ....++..|+..|+++.|++ ...+|++|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rn----------------k~l~~f~EH~Rs~~~ldfh~tep~iliSG 152 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRN----------------KLLTVFNEHERSANKLDFHSTEPNILISG 152 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccc----------------hhhhHhhhhccceeeeeeccCCccEEEec
Confidence 45668888666679999999999999999862110 11224778999999999999 56789999
Q ss_pred eCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC-CeeeEEecCCCCCeEEEEe
Q 001160 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGHEAPVYSVCP 505 (1134)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~i~~ 505 (1134)
+.||+|++||++..+... ++.+....|.+|.|+|-... .++++.+.|.+.+||++. .++...+..|.++|.++.|
T Consensus 153 SQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 153 SQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW 228 (839)
T ss_pred CCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence 999999999999876554 66678889999999997655 899999999999999986 4567788999999999999
Q ss_pred eccCCccEEEEEecCCeEEEEEccCCCceeEecC-CCCcEEEEEECCCCCE-EEEEeeCCCCCCcEEEEeCCCCe-eEEE
Q 001160 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-PGNWCTMMAYSADGTR-LFSCGTSKEGESHLVEWNESEGA-IKRT 582 (1134)
Q Consensus 506 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~~-~~~~ 582 (1134)
+|+. .+|++|+.|++|+|||+.+.+....... ...++.++.|-|...+ |++++. -.|-.|++||++..- +..+
T Consensus 229 hPnr--~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm--v~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 229 HPNR--EWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM--VVDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred cCCC--ceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc--cccceEEEEeecccccccee
Confidence 9944 8999999999999999987665544433 4558999999998776 455554 236779999998654 5567
Q ss_pred ecCccCcceEEEEEeC-CCCEEEEEeCCCeEEEEECCCCe
Q 001160 583 YSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMN 621 (1134)
Q Consensus 583 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 621 (1134)
+..|.. .++.++|.. |...+.+++.||+|..-..+++.
T Consensus 305 ~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 305 FLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred eeccCc-cccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 788877 888899975 34567788899988776665543
No 150
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=2.6e-20 Score=196.40 Aligned_cols=330 Identities=12% Similarity=0.238 Sum_probs=235.6
Q ss_pred eEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCC--EEEEEeCCCcE
Q 001160 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS--LLAVTTSDNGI 656 (1134)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~dg~i 656 (1134)
+-..+.+|.+ .|.+++..|.|.+|++|+.||+|+||.+.+|.++.++...+ .|.+++|+|.+. .||++..+ .+
T Consensus 392 ~~lvyrGHtg-~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~~-~~ 466 (733)
T KOG0650|consen 392 CALVYRGHTG-LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVGE-CV 466 (733)
T ss_pred eeeeEeccCC-eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEecC-ce
Confidence 3445778887 89999999999999999999999999999999999998764 689999999665 44544444 46
Q ss_pred EEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCccccccc
Q 001160 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 736 (1134)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1134)
.|.+..-|.++...... .. ++-.|
T Consensus 467 ~ivnp~~G~~~e~~~t~---el---------------------------l~~~~-------------------------- 490 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTK---EL---------------------------LASAP-------------------------- 490 (733)
T ss_pred EEeCccccchhhhcchh---hh---------------------------hhcCC--------------------------
Confidence 67665544221111000 00 00000
Q ss_pred ccccccccCccceeccCCCCCc--cceeEeecCCcccccceEEEEEecCCcceEEeecc---CeeEEeecccccCCCCCC
Q 001160 737 KPRVAEDVDKIKSWRIPDISDP--SQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN---AVHKLWKWQRTERNPSGK 811 (1134)
Q Consensus 737 ~~~~~~~~~~i~~w~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d---g~v~vw~~~~~~~~~~~~ 811 (1134)
.....+..+..|.-...... +.+..+. |...|..+.|+..|.+|++...+ ..|.|+++..
T Consensus 491 --~~~~p~~~~~~W~~~~~~e~~~~v~~~I~-----~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK-------- 555 (733)
T KOG0650|consen 491 --NESEPDAAVVTWSRASLDELEKGVCIVIK-----HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK-------- 555 (733)
T ss_pred --CccCCcccceeechhhhhhhccceEEEEe-----cCCccceeeeecCCceEEEeccCCCcceEEEEeccc--------
Confidence 00111235566655432211 1222222 67889999999999999987664 5566666532
Q ss_pred cccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcC
Q 001160 812 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHP 891 (1134)
Q Consensus 812 ~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~ 891 (1134)
...+ ..+.. . .+.+.++.|+|...++++++...|+|||+..+.++..+......|..++.+|
T Consensus 556 --------------~~sQ-~PF~k--s-kG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp 617 (733)
T KOG0650|consen 556 --------------RKSQ-SPFRK--S-KGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP 617 (733)
T ss_pred --------------cccc-Cchhh--c-CCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC
Confidence 1111 11211 2 6779999999999999999999999999999888888887788899999999
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCc-eEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCC
Q 001160 892 QDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR 970 (1134)
Q Consensus 892 ~~~~~lasg~~dg~i~iwd~~~~-~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~ 970 (1134)
.|.-|+.|+.|+.+..+|++-+ +..++++.|...+++++|++.-.++++|+.|+++.|+.-.-...+ ++.
T Consensus 618 -~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl----~qn---- 688 (733)
T KOG0650|consen 618 -NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDL----LQN---- 688 (733)
T ss_pred -CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhh----hcC----
Confidence 8888889999999999999854 677889999999999999999999999999999998853321111 000
Q ss_pred CCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCC----CCCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001160 971 QSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDAL----PAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045 (1134)
Q Consensus 971 ~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h----~~~v~~v~~s~dg~~l~~~~~dg~I~vwd 1045 (1134)
..+-.+....+| ...|....|+|..-+|++++.||+|++|.
T Consensus 689 ----------------------------------pliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 689 ----------------------------------PLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred ----------------------------------CceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 000001111222 34588999999999999999999999983
No 151
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=2.4e-20 Score=198.50 Aligned_cols=289 Identities=18% Similarity=0.215 Sum_probs=211.8
Q ss_pred EEEEec--CCCeEEEEEeCCCcEEEEEccCcccc-ccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe
Q 001160 351 SMDFHP--QQQTILLVGTNVGDISLWEVGSRERL-AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 351 ~v~~sp--dg~~llasg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
++.|++ +.+++||.+..||.|.++|....... ....|+ ....|...|..+.|-|....|++++
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk--------------~~~aH~nAifDl~wapge~~lVsas 119 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLK--------------KPLAHKNAIFDLKWAPGESLLVSAS 119 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhc--------------ccccccceeEeeccCCCceeEEEcc
Confidence 355653 45679999999999999998754322 111111 1346999999999999777999999
Q ss_pred CCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe-------------------
Q 001160 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR------------------- 488 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~------------------- 488 (1134)
.|.++++||+++++..... .+.||.+.|.+++|.+++.. .+++|+.||.|.|||++-..
T Consensus 120 GDsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p 197 (720)
T KOG0321|consen 120 GDSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP 197 (720)
T ss_pred CCceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC
Confidence 9999999999998776533 46799999999999999887 89999999999999986321
Q ss_pred --------eeEEecCCCCCeEE----EEeeccCCccEEEEEec-CCeEEEEEccCCCceeE--------ecCC---CCcE
Q 001160 489 --------KQYTFEGHEAPVYS----VCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVD--------YDAP---GNWC 544 (1134)
Q Consensus 489 --------~~~~~~~h~~~v~~----i~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~--------~~~~---~~~v 544 (1134)
.+.....+...|.+ +.| . |...|++++. |+.|+|||++....... +..+ ...+
T Consensus 198 tpskp~~kr~~k~kA~s~ti~ssvTvv~f-k--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~ 274 (720)
T KOG0321|consen 198 TPSKPLKKRIRKWKAASNTIFSSVTVVLF-K--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQ 274 (720)
T ss_pred CCCchhhccccccccccCceeeeeEEEEE-e--ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeee
Confidence 01112234444443 333 2 3378999888 99999999987554331 2222 2367
Q ss_pred EEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC--eeEEEecCccCcceE-EEEEeCCCCEEEEEeCCCeEEEEECCCCe
Q 001160 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYSGFRKRSLG-VVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1134)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1134)
.++.....|.+|++.+. |+.|++||+.+- .++..+.++....++ .-..+|++.++++|+.|...++|.+.+.+
T Consensus 275 ~nL~lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 275 VNLILDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred EEEEecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc
Confidence 88888888998887664 778999999863 355556655432322 23468999999999999999999998765
Q ss_pred eE-EEEeCCCCCCCcceEEEcc-CCCEEEEEeCCCcEEEEECCCc
Q 001160 622 ML-TTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 622 ~~-~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.- ..+.+| ...|++++|.| .-.-++++++|..+++|++.++
T Consensus 351 ~~~~~l~Gh--t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 351 APPALLLGH--TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CChhhhhCc--ceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 43 333433 45799999988 3345677799999999999776
No 152
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=6.5e-19 Score=187.50 Aligned_cols=274 Identities=15% Similarity=0.211 Sum_probs=212.0
Q ss_pred cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCee
Q 001160 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1134)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1134)
.|..++|-|||..|+.+. +..+.+||...|..+.++++|.+ .|+|++|+.||+.+++|+.|..|.+|+..-.-.
T Consensus 14 ci~d~afkPDGsqL~lAA-----g~rlliyD~ndG~llqtLKgHKD-tVycVAys~dGkrFASG~aDK~VI~W~~klEG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-----GSRLLVYDTSDGTLLQPLKGHKD-TVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI 87 (1081)
T ss_pred chheeEECCCCceEEEec-----CCEEEEEeCCCcccccccccccc-eEEEEEEccCCceeccCCCceeEEEecccccce
Confidence 788999999999988775 45699999999999999999999 999999999999999999999999998653322
Q ss_pred EEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCccc
Q 001160 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1134)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1134)
+.. .|...|.|+.|+|-...|++++-. ..-+|..... ...+
T Consensus 88 LkY----SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK-~V~K--------------------------------- 128 (1081)
T KOG1538|consen 88 LKY----SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK-SVSK--------------------------------- 128 (1081)
T ss_pred eee----ccCCeeeEeecCchHHHhhhcchh-hccccChhhh-hHHh---------------------------------
Confidence 221 344589999999998889888754 4567765432 1000
Q ss_pred ccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEec
Q 001160 703 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN 782 (1134)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 782 (1134)
.....++.+.+|..
T Consensus 129 ------------------------------------------------------------------~kss~R~~~CsWtn 142 (1081)
T KOG1538|consen 129 ------------------------------------------------------------------HKSSSRIICCSWTN 142 (1081)
T ss_pred ------------------------------------------------------------------hhhheeEEEeeecC
Confidence 01235678999999
Q ss_pred CCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCcc-ccccCCCCCCCCceEEEEeccCC-----CEEE
Q 001160 783 SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLM-TNDINESKPTEESAACIALSKND-----SYVM 856 (1134)
Q Consensus 783 ~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~h~~~~i~~~~~s~dg-----~~la 856 (1134)
||++++.|-.+|+|.+-+- +|+.. ....++ +. ..+|.+++|+|.. ..++
T Consensus 143 DGqylalG~~nGTIsiRNk-----------------------~gEek~~I~Rpg-g~-Nspiwsi~~~p~sg~G~~di~a 197 (1081)
T KOG1538|consen 143 DGQYLALGMFNGTISIRNK-----------------------NGEEKVKIERPG-GS-NSPIWSICWNPSSGEGRNDILA 197 (1081)
T ss_pred CCcEEEEeccCceEEeecC-----------------------CCCcceEEeCCC-CC-CCCceEEEecCCCCCCccceEE
Confidence 9999999999999998642 22211 111222 24 7899999999964 3666
Q ss_pred EEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecC
Q 001160 857 SAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935 (1134)
Q Consensus 857 ~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d 935 (1134)
+.+ ..++.+|.+. |+.+..-+.-.-...|+.+-+ +|.++..|+.|+.+.+|. +.|-.+.++......|+.++..|+
T Consensus 198 V~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PN 274 (1081)
T KOG1538|consen 198 VADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFT-NGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPN 274 (1081)
T ss_pred EEeccceeEEEEec-ceeecccccCCCCchhheecc-CCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccC
Confidence 666 6777777774 455544333444567899999 999999999999999997 457777777777788999999999
Q ss_pred CCEEEEEcCCCcEEEEeCCC
Q 001160 936 LNALVSSGADAQLCMWSIDK 955 (1134)
Q Consensus 936 ~~~l~s~~~D~~i~iWd~~~ 955 (1134)
++.++.|+.||+|.-|++..
T Consensus 275 sQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 275 SQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred CceEEEEEccCeeehhhhHH
Confidence 99999999999999998753
No 153
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=8.7e-20 Score=184.36 Aligned_cols=303 Identities=18% Similarity=0.225 Sum_probs=222.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
...+|..+.|.+++...+|+|+.|..|+||.+..+..-... ........|..|...|+++.|+|+|..||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCcCeee
Confidence 35699999999998767999999999999999876543210 01112234788999999999999999999
Q ss_pred EEeCCCeEEEEEcC--------C-----CCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeE
Q 001160 425 VAFSKHIVHLYTYN--------P-----TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1134)
Q Consensus 425 s~~~dg~i~iwd~~--------~-----~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~ 491 (1134)
+|+.+|.|.+|... + .+.......+.+|...|..++|+||+. ++++++-|..+++||+..|..+.
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence 99999999999876 2 122334456778999999999999999 89999999999999999999999
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec-------------------CC----CCcEEEEE
Q 001160 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-------------------AP----GNWCTMMA 548 (1134)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-------------------~~----~~~v~~~~ 548 (1134)
.+.+|...|..++|.|-. +++++-+.|...+.+.+...+...... .| ..-...++
T Consensus 160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls 237 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS 237 (434)
T ss_pred eccccccccceeecchhh--hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence 999999999999998876 899999988877766654332221100 01 11345678
Q ss_pred ECCCCCEEEEEeeCCCC-----CCcEEEEeCCC-CeeEEEecCccCcceEEEEEeC------------------CCCEEE
Q 001160 549 YSADGTRLFSCGTSKEG-----ESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDT------------------TRNRFL 604 (1134)
Q Consensus 549 ~s~~~~~l~~~~~~~~~-----~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~------------------~~~~l~ 604 (1134)
|+|||..+++...--+- -+..++++-.. .++...+.+... ....+.|+| .+-.++
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 99999999875421111 22345555432 234444444443 344444443 222334
Q ss_pred EEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 605 AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 605 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.+ ....|++||.++..++.....- +...++.++|++||..++..+.||...+..++..
T Consensus 317 iA-t~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 317 IA-TKNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred Ee-ecceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 44 4567999999998888777532 3458999999999999999999999988877765
No 154
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.8e-19 Score=173.98 Aligned_cols=255 Identities=13% Similarity=0.191 Sum_probs=194.2
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CCccceeeEEecccCCeeEEEEecC--CCcEEEEEEcCCCcEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIK 480 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~sg~~d~~i~ 480 (1134)
-.+|.+-|.|+.|.+-|+++|+|+.|++++|||.++ ..........+.|.+.|..+.|.+- |+ .+|+++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 467999999999999999999999999999999543 3445556678899999999999653 55 899999999999
Q ss_pred EEECCC------C---eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeE------e-------c
Q 001160 481 VWDVVA------G---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD------Y-------D 538 (1134)
Q Consensus 481 iwd~~~------~---~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~------~-------~ 538 (1134)
||.-.. + ....++......|+.+.|.|..-|-.+++++.||.+|||+......... + .
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 998421 1 1234566778899999999999889999999999999998754332221 1 1
Q ss_pred CCCCcEEEEEECCC---CCEEEEEeeC-CCCCCcEEEEeCCCC----eeEEEecCccCcceEEEEEeCCC----CEEEEE
Q 001160 539 APGNWCTMMAYSAD---GTRLFSCGTS-KEGESHLVEWNESEG----AIKRTYSGFRKRSLGVVQFDTTR----NRFLAA 606 (1134)
Q Consensus 539 ~~~~~v~~~~~s~~---~~~l~~~~~~-~~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~ 606 (1134)
.+.....|+.|+|. ..+|+.++.+ ...-+.++||....+ ..+.++.+|.+ +|+.++|.|+- ..|+++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEe
Confidence 23446789999974 3567776632 112346788876543 24566777877 99999999964 468889
Q ss_pred eCCCeEEEEECCCCe-----------------eEEEEe-CCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001160 607 GDEFQIKFWDMDNMN-----------------MLTTVD-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 607 ~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
+.|| |+||++.... .+..+. ..+|...|..+.|+-.|..|++.+.||.||+|...
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999 9999987311 122222 33456689999999999999999999999999764
No 155
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.2e-21 Score=211.09 Aligned_cols=233 Identities=11% Similarity=0.220 Sum_probs=209.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
|...|.|+..-..++ .+++|+.|..+.+|.+..-..+. .+.+|..+|.|+.|+++..+|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhhhc
Confidence 677888888866665 78999999999999977544332 2689999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1134)
+|+.+|+|++||+..++.++ +|.+|...+.++.|+|-+. +.++|+.|+.+++||++..-|.+.+.+|...|..+.
T Consensus 87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 99999999999999988777 8889999999999999999 789999999999999998889999999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEec
Q 001160 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1134)
|+|++ .++++++.|.++++||+..++....+..|...+.++.|+|..-.++.|+. |.++++||+++.+.+....
T Consensus 162 lsP~G--r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 162 LSPDG--RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEVISSGK 235 (825)
T ss_pred ecCCC--ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEEeeccC
Confidence 98865 89999999999999999999999999999999999999999888888875 8889999999999888887
Q ss_pred CccCcceEEEEEeCCCCEEEEEeCC
Q 001160 585 GFRKRSLGVVQFDTTRNRFLAAGDE 609 (1134)
Q Consensus 585 ~~~~~~v~~~~~~~~~~~l~~~~~d 609 (1134)
.... .|.+..|+|++..+++|...
T Consensus 236 ~~~~-~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 236 PETD-GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CccC-CceeeeecCCceeeecCchh
Confidence 7765 89999999999988887644
No 156
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4e-21 Score=219.13 Aligned_cols=253 Identities=14% Similarity=0.243 Sum_probs=208.3
Q ss_pred CCcCeEEEEEcCCCCE----EEEEeCCCeEEEEEcCC---CCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcE
Q 001160 407 AAISVNRCVWGPDGLM----LGVAFSKHIVHLYTYNP---TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~----las~~~dg~i~iwd~~~---~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i 479 (1134)
....-+.++|.+.|.. ||.|..||.|.+||... +.....+.....|.+.|..+.|++.... ++|+|+.||.|
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI 141 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEI 141 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcE
Confidence 3456889999998876 88899999999999876 4444444467789999999999998877 89999999999
Q ss_pred EEEECCCCeeeEEec--CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCC--cEEEEEECCCCCE
Q 001160 480 KVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTR 555 (1134)
Q Consensus 480 ~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~ 555 (1134)
.|||+..-+.-.++. ...+.|.+++|+..- ...|++++.+|.+.|||++..+.+..+..+.. .+..++|+|++..
T Consensus 142 ~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkv-qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT 220 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPGSQAPPSEIKCLSWNRKV-SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT 220 (1049)
T ss_pred EEeccCCcCCCCCCCCCCCcccceEeccchhh-hHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce
Confidence 999998865554442 245789999998653 37899999999999999999888777766554 5789999999865
Q ss_pred EEEEeeCCCCCCcEEEEeCCC-CeeEEEecCccCcceEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCC
Q 001160 556 LFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633 (1134)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1134)
-+....+.|+...|.+||++. ..+++.+++|.. .|.++.|++.+ .++++++.|+.|.+|+.++++.+..+... ..
T Consensus 221 ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~--~n 297 (1049)
T KOG0307|consen 221 QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ--GN 297 (1049)
T ss_pred eeeeecCCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC--Cc
Confidence 444344556788999999985 457788888887 89999999977 78888999999999999999999998764 34
Q ss_pred CcceEEEccCCC-EEEEEeCCCcEEEEECCCc
Q 001160 634 ASPRLRFNKEGS-LLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 634 ~v~~~~~s~d~~-~l~~~~~dg~i~iw~~~~~ 664 (1134)
.+..+.|.|... .+++++-||.|.|+.+.+.
T Consensus 298 W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 298 WCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred ceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 789999999554 8888999999999998765
No 157
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=2.8e-19 Score=175.50 Aligned_cols=290 Identities=17% Similarity=0.273 Sum_probs=212.0
Q ss_pred CCCCeeEEEEec----CCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCC-
Q 001160 345 QGSNVMSMDFHP----QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD- 419 (1134)
Q Consensus 345 h~~~V~~v~~sp----dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd- 419 (1134)
|..+|..++|++ +...++|+.+ ...+.+|+......+. .++...-..|...-..++|+-|
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir--------------~lq~y~D~d~~Esfytcsw~yd~ 101 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIR--------------LLQSYADEDHDESFYTCSWSYDS 101 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcccee--------------eeeeccCCCCCcceEEEEEEecC
Confidence 778999999984 3334666655 5689999886543211 0111112347778888999764
Q ss_pred ---CCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe---
Q 001160 420 ---GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--- 493 (1134)
Q Consensus 420 ---g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~--- 493 (1134)
..++|+|+.-|.|+|.|+.+++... .+.+|...|+.+.|.|+..+ +++++|.|.+|++|++++..++..|
T Consensus 102 ~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 102 NTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred CCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEeccc
Confidence 3489999999999999999987766 67799999999999999877 8999999999999999999999877
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCcee----------------------------EecCCCCcEE
Q 001160 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----------------------------DYDAPGNWCT 545 (1134)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~----------------------------~~~~~~~~v~ 545 (1134)
.||.+.|.++.|++++ .++++++.|.++++|++...+... ....|...|.
T Consensus 178 egHrdeVLSvD~~~~g--d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSLDG--DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccCcEEEEEEcCCC--CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 4699999999997765 799999999999999997322111 0111222333
Q ss_pred EEEECCCCCEEEEEeeCCCCCCcEEEEeCC-CCee-------------EEEecCccCcceEE--EEEeCCCCEEEEEeCC
Q 001160 546 MMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAI-------------KRTYSGFRKRSLGV--VQFDTTRNRFLAAGDE 609 (1134)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~-------------~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~d 609 (1134)
|+.|- |+++++-+ .++.|..|... -++. +..+....- .+.- .+|.|-++.|+.|...
T Consensus 256 Cvrw~--gd~ilSks----cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c-~iWfirf~~d~~~~~la~gnq~ 328 (385)
T KOG1034|consen 256 CVRWF--GDFILSKS----CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC-DIWFIRFAFDPWQKMLALGNQS 328 (385)
T ss_pred HHHHH--hhheeecc----cCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc-ceEEEEEeecHHHHHHhhccCC
Confidence 33333 45666654 36679999872 1111 122222211 3443 4456667889999999
Q ss_pred CeEEEEECCCCee--EEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001160 610 FQIKFWDMDNMNM--LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 610 g~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
|.|++||++..++ ..++..+.....|...+|+.||..|+...+|++|.-||..
T Consensus 329 g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 329 GKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999998665 3344444455689999999999999999999999999853
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=5.8e-17 Score=189.99 Aligned_cols=374 Identities=22% Similarity=0.397 Sum_probs=287.7
Q ss_pred EEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe-eeEEecCCCC-CeEEEEeeccCCcc-EEEEEec-CCeE
Q 001160 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGHEA-PVYSVCPHHKESIQ-FIFSTAI-DGKI 523 (1134)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~h~~-~v~~i~~~~~~~~~-~l~s~~~-d~~i 523 (1134)
.+..|...+..+.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccE
Confidence 3457899999999999999 78888899999999998887 6777776443 77888774 44445 5555445 9999
Q ss_pred EEEEccC-CCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCC-
Q 001160 524 KAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN- 601 (1134)
Q Consensus 524 ~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 601 (1134)
.+||... ......+..|...|..++|+|+++.+++++. .++.+++|+...+..+..+.+|.. .+.+++|+|++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 212 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHTD-PVSSLAFSPDGGL 212 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCCC-ceEEEEEcCCcce
Confidence 9999998 6777788889999999999999998877742 378899999999899999998776 899999999998
Q ss_pred EEEEEeCCCeEEEEECCCCeeEE-EEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccC
Q 001160 602 RFLAAGDEFQIKFWDMDNMNMLT-TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 680 (1134)
Q Consensus 602 ~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 680 (1134)
.+++++.|+.|++||...+..+. .+..+.. .. ...|++++..+++++.|+.+++|+..........+
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------- 280 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSD--SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--------- 280 (466)
T ss_pred EEEEecCCCcEEEEECCCCcEEeeecCCCCc--ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE---------
Confidence 45555899999999998777777 5665543 22 22899999899999999999999987652100000
Q ss_pred CCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccc
Q 001160 681 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 760 (1134)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~ 760 (1134)
T Consensus 281 -------------------------------------------------------------------------------- 280 (466)
T COG2319 281 -------------------------------------------------------------------------------- 280 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCC
Q 001160 761 IKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 840 (1134)
Q Consensus 761 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~ 840 (1134)
..|...+.++.+.|++..+++++.|+.+.+|+...... ..... ...| .
T Consensus 281 --------~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~-~~~~-~ 328 (466)
T COG2319 281 --------SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL----------------------LSSLT-LKGH-E 328 (466)
T ss_pred --------ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce----------------------EEEee-eccc-C
Confidence 11456788889999888888888888899997643211 00000 1115 5
Q ss_pred CceEEEEeccCCCEEEEE-e-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEE-EeCCCcEEEEEcCCceEE
Q 001160 841 ESAACIALSKNDSYVMSA-S-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI-GMEDSSVQIYNVRVDEVK 917 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~-s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~las-g~~dg~i~iwd~~~~~~~ 917 (1134)
..+..+.+.+++..++.+ . |+.+.+|++............. .+..+.+++ + ..+.. +..++.+.+|+.......
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~ 405 (466)
T COG2319 329 GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLL 405 (466)
T ss_pred CceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeee
Confidence 678889884343566666 4 7889999998877333333222 289999999 7 55554 789999999999988877
Q ss_pred EEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCC
Q 001160 918 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1134)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~ 955 (1134)
.....+...+....+++++..+++++.++.+++|+..+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 406 RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred eeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 77665547889999999999999999999999999988
No 159
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=7.9e-19 Score=180.02 Aligned_cols=209 Identities=15% Similarity=0.205 Sum_probs=167.6
Q ss_pred EEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC----eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeE
Q 001160 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523 (1134)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~----~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i 523 (1134)
...-+.++|++++|+|....-++++|+.-|.|-+||+.+. ..+..+..|.++|.++.|+|... ..+++.|.||+|
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~-s~i~ssSyDGti 259 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT-SQIYSSSYDGTI 259 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh-hheeeeccCcee
Confidence 4456889999999999877448999999999999999532 34567888999999999999866 789999999999
Q ss_pred EEEEccCCCceeEecC--CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee-EEEecCccCcceEEEEEeCCC
Q 001160 524 KAWLYDYLGSRVDYDA--PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTR 600 (1134)
Q Consensus 524 ~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~ 600 (1134)
++-|++.......+.. ....+..+.|+.+...++.+.. -|.+.+||.+++.. ...+..|.. .|++++++|..
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~----~G~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~NP~~ 334 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN----VGNFNVIDLRTDGSEYENLRLHKK-KITSVALNPVC 334 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec----ccceEEEEeecCCccchhhhhhhc-ccceeecCCCC
Confidence 9999987655444443 5567888999998888887753 45799999997654 566667776 89999999977
Q ss_pred -CEEEEEeCCCeEEEEECCCCeeEE--EEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001160 601 -NRFLAAGDEFQIKFWDMDNMNMLT--TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 601 -~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
.+++++|.|++++|||++...... .+..-.|...|.++.|||.+..|++.+.|..|+|||..
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 457889999999999998643322 23333455689999999988779999999999999963
No 160
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=3.3e-19 Score=178.07 Aligned_cols=268 Identities=13% Similarity=0.199 Sum_probs=194.2
Q ss_pred cceEEEEecCCCCeeEEEEecCCC-eEEEEEeCCCcEEEEEccCccc-cccccceeeccccccccccccccccCCcCeEE
Q 001160 336 TKTVVRTLNQGSNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRER-LAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1134)
Q Consensus 336 ~~~~~~~l~h~~~V~~v~~spdg~-~llasg~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 413 (1134)
|.-..+...|.+.++.+.-++-|+ .+.|+-+..|.|.||++...-. +....+.+-+ ....+...+.+|.+.=+.
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~ 216 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYG 216 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCcccee
Confidence 444456666888999999988763 4667778899999999864321 1110110000 111223346789999999
Q ss_pred EEEcCC-CCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC---ee
Q 001160 414 CVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RK 489 (1134)
Q Consensus 414 i~~spd-g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~---~~ 489 (1134)
++|||- ...|++|..-+.|++|...++.-......+.+|...|..++|||..+. +|++||.|++|+|||++.+ .+
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence 999993 335888888889999999987655444567789999999999998877 8999999999999999987 34
Q ss_pred eEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC---CceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCC
Q 001160 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL---GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1134)
Q Consensus 490 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1134)
+.+ +.|.+.|+.|.|+... .+|++|+.||+++|||++.. +.+..+..|..+|+++.|+|.....+.++. .|
T Consensus 296 ~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D 369 (440)
T KOG0302|consen 296 VST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---ED 369 (440)
T ss_pred eEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---CC
Confidence 444 7899999999997765 59999999999999999864 456688999999999999997655444332 48
Q ss_pred CcEEEEeCCCCee----------------EEEecCc-cCcceEEEEEeCCC-CEEEEEeCCCeEEEE
Q 001160 567 SHLVEWNESEGAI----------------KRTYSGF-RKRSLGVVQFDTTR-NRFLAAGDEFQIKFW 615 (1134)
Q Consensus 567 ~~i~~wd~~~~~~----------------~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw 615 (1134)
.+|.+||+....- .+-+-.| .+..+.-+.|++.- .++++.+.|| +.||
T Consensus 370 ~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 370 NQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred CcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 8899999853110 1111122 22256678888765 4666677777 4444
No 161
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=2.2e-16 Score=185.07 Aligned_cols=288 Identities=25% Similarity=0.436 Sum_probs=220.1
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcc-ccccccceeeccccccccccccccccCC-cCeEEEEE-cCCC
Q 001160 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE-RLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVW-GPDG 420 (1134)
Q Consensus 344 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~i~~-spdg 420 (1134)
.|...|.++.|.+.+. .++.++.|+.+.+|+...+. .... +.++. ..+..+.+ ++++
T Consensus 63 ~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~ 122 (466)
T COG2319 63 GHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSSPDG 122 (466)
T ss_pred eccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEECCCc
Confidence 4788999999999998 56777789999999998875 2221 22322 36777777 8888
Q ss_pred C-EEEEEeC-CCeEEEEEcCC-CCccceeeEEecccCCeeEEEEecCCCcEEEEEEcC-CCcEEEEECCCCeeeEEecCC
Q 001160 421 L-MLGVAFS-KHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVVAGRKQYTFEGH 496 (1134)
Q Consensus 421 ~-~las~~~-dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~-d~~i~iwd~~~~~~~~~~~~h 496 (1134)
. .++..+. |+.+.+|+... ..... .+..|...|..++|+|++. .+++++. |+.+++|++.++..+..+.+|
T Consensus 123 ~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (466)
T COG2319 123 NSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTLAGH 197 (466)
T ss_pred ceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEeeccC
Confidence 8 5555444 99999999987 43333 6778999999999999999 7888875 999999999998999999999
Q ss_pred CCCeEEEEeeccCCcc-EEEEEecCCeEEEEEccCCCcee-EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeC
Q 001160 497 EAPVYSVCPHHKESIQ-FIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1134)
Q Consensus 497 ~~~v~~i~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1134)
...|.+++++|.+ . .+++++.|+.|++||........ .+..+.... ...|++++..+++++. ++.+++|+.
T Consensus 198 ~~~v~~~~~~~~~--~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~~~~ 270 (466)
T COG2319 198 TDPVSSLAFSPDG--GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRLWDL 270 (466)
T ss_pred CCceEEEEEcCCc--ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEEeee
Confidence 9999999998554 4 55556999999999888666655 466666664 3489999988886653 888999999
Q ss_pred CCCee-EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEE-eC
Q 001160 575 SEGAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT-TS 652 (1134)
Q Consensus 575 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~~ 652 (1134)
..... +..+.+|.. .+.++.|+|++..+++++.|+.+.+|+..+...........+...+..+.|.+++..++.+ ..
T Consensus 271 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (466)
T COG2319 271 RSSSSLLRTLSGHSS-SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349 (466)
T ss_pred cCCCcEEEEEecCCc-cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecC
Confidence 87664 444445544 8999999998889888888889999999888776666511222257888883332455555 56
Q ss_pred CCcEEEEECCCc
Q 001160 653 DNGIKILANSDG 664 (1134)
Q Consensus 653 dg~i~iw~~~~~ 664 (1134)
|+.+.+|+....
T Consensus 350 d~~~~~~~~~~~ 361 (466)
T COG2319 350 DGTIRLWDLRTG 361 (466)
T ss_pred CCcEEeeecCCC
Confidence 777888876544
No 162
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.83 E-value=8.7e-19 Score=171.62 Aligned_cols=408 Identities=12% Similarity=0.119 Sum_probs=258.0
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE
Q 001160 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1134)
Q Consensus 413 ~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~ 492 (1134)
-++|||+|+++|+++.- .+.|-|..+-+..+.. .--+.|..+.|..|... .|.....|+.|.+|++...+--..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 46899999999999766 7888888775544321 12456888999998875 566677899999999999998889
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEE
Q 001160 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1134)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1134)
+.....++.+++|+|++. ..|.+...|-.|.+|.+.+..... +......+..++|+|||++.+.++. .|-...+.+.
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sR-rDCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSR-RDCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeec-ccHHHHHHHH
Confidence 988899999999998753 677778889999999998765544 3334455689999999999998864 1111123333
Q ss_pred eCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe--CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEE
Q 001160 573 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1134)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 650 (1134)
.-.....++.+..... ..+.+.|+|||+.+++-. -+-.|+.|... -.+..++|+|.+++|++|
T Consensus 164 ~c~~W~ll~~f~~dT~-DltgieWsPdg~~laVwd~~Leykv~aYe~~--------------lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAVWDNVLEYKVYAYERG--------------LGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred hhHHHHHHHhcCCCcc-cccCceECCCCcEEEEecchhhheeeeeeec--------------cceeEEEeccccceEEee
Confidence 2333445555655554 577899999998877632 22333332221 246789999999999999
Q ss_pred eCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCc
Q 001160 651 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 730 (1134)
Q Consensus 651 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1134)
+.|+.+|+.|--+- +.+..+- |...+
T Consensus 229 syD~~lrvlnh~tW-k~f~efl-hl~s~---------------------------------------------------- 254 (447)
T KOG4497|consen 229 SYDQMLRVLNHFTW-KPFGEFL-HLCSY---------------------------------------------------- 254 (447)
T ss_pred ccchhhhhhceeee-eehhhhc-cchhc----------------------------------------------------
Confidence 99999999775443 1111110 10000
Q ss_pred ccccccccccccccCc-cceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCC
Q 001160 731 SRLVDVKPRVAEDVDK-IKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPS 809 (1134)
Q Consensus 731 ~~~~~~~~~~~~~~~~-i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~ 809 (1134)
.|.+ ..++.-.. .. -.-...++.|.|..- ...+|..........
T Consensus 255 ------------~dp~~~~~~ke~~-------~~-------~ql~~~cLsf~p~~~---------~a~~~~~se~~YE~~ 299 (447)
T KOG4497|consen 255 ------------HDPTLHLLEKETF-------SI-------VQLLHHCLSFTPTDL---------EAHIWEESETIYEQQ 299 (447)
T ss_pred ------------cCchhhhhhhhhc-------ch-------hhhcccccccCCCcc---------ccCccccchhhhhhh
Confidence 0000 00000000 00 000012233333211 001111000000000
Q ss_pred CCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeC---CeEEEEECCCCeEEEEecCCCCceEE
Q 001160 810 GKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG---GKVSLFNMMTFKVMTMFMSPPPAATF 886 (1134)
Q Consensus 810 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sd---g~i~vwd~~~~~~~~~~~~~~~~i~~ 886 (1134)
...+ .....++.. +.+. + .-.+.-++||+|..++|+-.| +.+.+||++..+....+. ...+|..
T Consensus 300 -----~~pv---~~~~lkp~t-D~pn--P-k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~pira 366 (447)
T KOG4497|consen 300 -----MTPV---KVHKLKPPT-DFPN--P-KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRA 366 (447)
T ss_pred -----hcce---eeecccCCC-CCCC--c-ccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeE
Confidence 0000 000000000 1111 3 556778999999999999875 569999998776655544 5678999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcE
Q 001160 887 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQL 948 (1134)
Q Consensus 887 l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i 948 (1134)
..|.| +...|+.......+++|......++.. .+..-.|..+.|.-+|..++-.+.|...
T Consensus 367 f~WdP-~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 367 FEWDP-GRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred EEeCC-CCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCceE
Confidence 99999 777777777777899999765444443 3334679999999999999999988743
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=4.6e-19 Score=182.64 Aligned_cols=217 Identities=17% Similarity=0.283 Sum_probs=169.2
Q ss_pred EEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEE
Q 001160 777 RLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM 856 (1134)
Q Consensus 777 ~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la 856 (1134)
|++......++++++..++|+|||+.. +++...+++ | ...|+++.+.-...|||
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-----------------------kl~hr~lkd--h-~stvt~v~YN~~DeyiA 137 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRA-----------------------KLIHRFLKD--H-QSTVTYVDYNNTDEYIA 137 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHH-----------------------HHHhhhccC--C-cceeEEEEecCCcceeE
Confidence 344444447899999999999998742 233344566 8 99999999999999999
Q ss_pred EEe-CCeEEEEECCCCeEEEEecCCCC-ceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEE-ecCcccceEEEEEe
Q 001160 857 SAS-GGKVSLFNMMTFKVMTMFMSPPP-AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFS 933 (1134)
Q Consensus 857 ~~s-dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~-l~~h~~~i~~l~~s 933 (1134)
+++ .|.|.|..+.++.....|....+ .|.-+.|||....+|.+++++|.|.+||+.....+.. ...|..+...|+|+
T Consensus 138 svs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfs 217 (673)
T KOG4378|consen 138 SVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFS 217 (673)
T ss_pred EeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceec
Confidence 999 68999999999887777775434 4669999996666788999999999999987766554 46899999999999
Q ss_pred cC-CCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE-ECCeEEEEeCCCcceeccC
Q 001160 934 PT-LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLECSRSWS 1011 (1134)
Q Consensus 934 ~d-~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~v~vwd~~~~~~~~~~ 1011 (1134)
|. ..+|++.|.|..|.+||....+....... . .+...++|+++|.+|++| ..|.|..||+.+.... +.
T Consensus 218 psne~l~vsVG~Dkki~~yD~~s~~s~~~l~y----~-----~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P-v~ 287 (673)
T KOG4378|consen 218 PSNEALLVSVGYDKKINIYDIRSQASTDRLTY----S-----HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP-VA 287 (673)
T ss_pred CCccceEEEecccceEEEeecccccccceeee----c-----CCcceeeecCCceEEEeecCCceEEEEecccCCCC-ce
Confidence 95 56889999999999999987553322111 1 346899999999999996 6899999999333221 12
Q ss_pred CCCCCCCCeEEEEEccCC
Q 001160 1012 PKDALPAPISSAIYSCDG 1029 (1134)
Q Consensus 1012 ~~~~h~~~v~~v~~s~dg 1029 (1134)
....|...|++++|-+..
T Consensus 288 v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 288 VRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EeeecccceeEEEeeecc
Confidence 235668889999997754
No 164
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=7.7e-19 Score=181.01 Aligned_cols=278 Identities=12% Similarity=0.148 Sum_probs=208.4
Q ss_pred CCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCc-cce
Q 001160 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGE-LRQ 445 (1134)
Q Consensus 368 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~-~las~~~dg~i~iwd~~~~~~-~~~ 445 (1134)
...++|||+...+...... .......+.++.|+.... .+|+.+.|..+++|.-..... +..
T Consensus 11 gd~~kl~D~s~~~~~~~~~-----------------~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~ 73 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYV-----------------HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPR 73 (673)
T ss_pred CCceEEeecccccCccccc-----------------cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccce
Confidence 4589999987655432100 001122399999998775 233345688899997654311 222
Q ss_pred eeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEE
Q 001160 446 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1134)
Q Consensus 446 ~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~ 525 (1134)
.....+. .-.|++...... ++++|+..+.|+|||++...+.+.+++|+..|+++.++... .+|++++..|.|.+
T Consensus 74 ~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D--eyiAsvs~gGdiii 147 (673)
T KOG4378|consen 74 VRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD--EYIASVSDGGDIII 147 (673)
T ss_pred eeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc--ceeEEeccCCcEEE
Confidence 2222222 334444444444 89999999999999999887888899999999999987655 89999999999999
Q ss_pred EEccCCCceeEecCC-CCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCC-CEE
Q 001160 526 WLYDYLGSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NRF 603 (1134)
Q Consensus 526 wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l 603 (1134)
..+.++.....+... +..|.-+.|+|..+.+++... .+|.|.+||+....++..+...+..+...++|+|.. ..|
T Consensus 148 h~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as---d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 148 HGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS---DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred EecccCccccceecCCCCeEEEeecccccceeeEeec---cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence 999988877777766 445668999999888775443 388999999998888877765555588999999977 456
Q ss_pred EEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCC
Q 001160 604 LAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674 (1134)
Q Consensus 604 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 674 (1134)
++.|.|..|++||....+....+... .+...++|+++|.+|++|+..|.|..||++..+..+..+..|
T Consensus 225 vsVG~Dkki~~yD~~s~~s~~~l~y~---~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah 292 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQASTDRLTYS---HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH 292 (673)
T ss_pred EEecccceEEEeecccccccceeeec---CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec
Confidence 77899999999999988777777543 367899999999999999999999999998775555544443
No 165
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.82 E-value=1.3e-18 Score=170.29 Aligned_cols=289 Identities=13% Similarity=0.183 Sum_probs=210.0
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEc-------CCC
Q 001160 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG-------PDG 420 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s-------pdg 420 (1134)
-...+.|||||.- +.+-+.|..+.+|++...---...... ...+....+-......|...+|- |+.
T Consensus 51 f~kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~~~~------~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t 123 (406)
T KOG2919|consen 51 FLKGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKADGP------LNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST 123 (406)
T ss_pred hhccceeCCCCce-EEeecccCeeeEEecChhhcccCCCCc------cccccceeEEeccCCEEEEEEeeeccccCCCcc
Confidence 3457899999985 556788999999998532110000000 00000000111234567788875 678
Q ss_pred CEEEEEeCCCeEEEEEcCCCCccceeeEEecccC---CeeEEEEecCCCcEEEEEEcCCCcEEEEEC-CCCeee--EEe-
Q 001160 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG---GVNDIAFAHPNKQLCIVTCGDDKMIKVWDV-VAGRKQ--YTF- 493 (1134)
Q Consensus 421 ~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~---~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~-~~~~~~--~~~- 493 (1134)
.++|+.+.+.-|++||.-+|+.......+ .|.. ...+++|+|||. .|+. +..+.|+++|+ +.|+.- +..
T Consensus 124 ~l~a~ssr~~PIh~wdaftG~lraSy~~y-dh~de~taAhsL~Fs~DGe--qlfa-GykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAFTGKLRASYRAY-DHQDEYTAAHSLQFSPDGE--QLFA-GYKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred ceeeeccccCceeeeeccccccccchhhh-hhHHhhhhheeEEecCCCC--eEee-cccceEEEeeccCCCCCCcchhhh
Confidence 89999999999999999998765433222 3444 346899999999 5664 55789999998 455432 211
Q ss_pred ----cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcE
Q 001160 494 ----EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1134)
Q Consensus 494 ----~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1134)
.+..+-|.+++|+|... ..++.++...++-+|.-...+....+.+|.+.|+.+.|.++|+.|++++. .+..|
T Consensus 200 ~~~k~gq~giisc~a~sP~~~-~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dkI 275 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDS-KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDKI 275 (406)
T ss_pred hcccccccceeeeeeccCCCC-cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCeE
Confidence 13367788999999754 68999999999999988888889999999999999999999999999985 46679
Q ss_pred EEEeCCC-CeeEEEecCccCcceEE--EEEeCCCCEEEEEeCCCeEEEEECCC-CeeEEEEeCCCCCCCcceEEEccCCC
Q 001160 570 VEWNESE-GAIKRTYSGFRKRSLGV--VQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGS 645 (1134)
Q Consensus 570 ~~wd~~~-~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~ 645 (1134)
..||++. +.++..+..|....-.. ....|++++|++|+.||.|++||+++ +..+..+..+. ..++.++++|--.
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s--d~vNgvslnP~mp 353 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS--DTVNGVSLNPIMP 353 (406)
T ss_pred EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc--ccccceecCcccc
Confidence 9999985 55666776665422222 44578899999999999999999998 67666666553 4789999999988
Q ss_pred EEEEEeCC
Q 001160 646 LLAVTTSD 653 (1134)
Q Consensus 646 ~l~~~~~d 653 (1134)
++|+++..
T Consensus 354 ilatssGq 361 (406)
T KOG2919|consen 354 ILATSSGQ 361 (406)
T ss_pred eeeeccCc
Confidence 88877654
No 166
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=1e-18 Score=171.60 Aligned_cols=252 Identities=17% Similarity=0.229 Sum_probs=187.2
Q ss_pred cccccCCcCeEEEEEcC-----CCCEEEEEeCCCeEEEEEcCCCCccceeeEEe--cccCCeeEEEEecCCC--cEEEEE
Q 001160 402 ALLNDAAISVNRCVWGP-----DGLMLGVAFSKHIVHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHPNK--QLCIVT 472 (1134)
Q Consensus 402 ~~l~~h~~~V~~i~~sp-----dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~d~~--~~~l~s 472 (1134)
.+..+|+.+|..++|++ +-+.+|+++. ..+.+|.......++...... .|......++|+-|.. ..++|.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34678999999999985 2345555544 468899887655333222222 3777788899976533 237888
Q ss_pred EcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe---cCCCCcEEEEEE
Q 001160 473 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGNWCTMMAY 549 (1134)
Q Consensus 473 g~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~~~~ 549 (1134)
|+.-|.|+|.|+.++++...+.+|...|+.+.++|... ++++++|.|..||+|++++..++..+ .+|...|.++.|
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~-qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP-QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCCCC-cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 99999999999999999999999999999999999865 79999999999999999999998876 457789999999
Q ss_pred CCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE----------------------------ecCccCcceEEEEEeCCCC
Q 001160 550 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRT----------------------------YSGFRKRSLGVVQFDTTRN 601 (1134)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~----------------------------~~~~~~~~v~~~~~~~~~~ 601 (1134)
+++|.+++++|. |.+|.+|++...+.... -..|.. .|.|+.|- |+
T Consensus 190 ~~~gd~i~ScGm----Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrn-yVDCvrw~--gd 262 (385)
T KOG1034|consen 190 SLDGDRIASCGM----DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRN-YVDCVRWF--GD 262 (385)
T ss_pred cCCCCeeeccCC----cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccc-hHHHHHHH--hh
Confidence 999999999997 77899999974321110 011222 45555554 57
Q ss_pred EEEEEeCCCeEEEEECC-CCee-------------EEEEeCCCCCCCcce--EEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 602 RFLAAGDEFQIKFWDMD-NMNM-------------LTTVDADGGLPASPR--LRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 602 ~l~~~~~dg~i~iwd~~-~~~~-------------~~~~~~~~~~~~v~~--~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
++++-|-++.|..|... -++. +..++... ..|+- .+|.|-+++||.|...|.|.+||+.+.
T Consensus 263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~--c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPM--CDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCc--cceEEEEEeecHHHHHHhhccCCCcEEEEECCCC
Confidence 88888888899999872 1221 22222222 23343 455667889999999999999999876
No 167
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=5.9e-18 Score=171.27 Aligned_cols=301 Identities=18% Similarity=0.235 Sum_probs=215.0
Q ss_pred ccceEEEEEecCCc-ceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc
Q 001160 772 ASKVVRLIYTNSGL-SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1134)
Q Consensus 772 ~~~v~~~~~s~~g~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1134)
..++.++.|.+++. .+++++.|..|++|.++.......+..+ .....+. .| ...|+++.|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V--------------~y~s~Ls--~H-~~aVN~vRf~p 75 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKV--------------EYLSSLS--RH-TRAVNVVRFSP 75 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeE--------------EEeeccc--CC-cceeEEEEEcC
Confidence 45788999998877 8999999999999988754331111000 0111132 37 99999999999
Q ss_pred CCCEEEEEe-CCeEEEEECC--------C--------CeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC
Q 001160 851 NDSYVMSAS-GGKVSLFNMM--------T--------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~~--------~--------~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~ 913 (1134)
+|..+|+|+ +|.|.+|-.. + ......+.+|...|..++|+| +++++++|+-|..+++||+..
T Consensus 76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc
Confidence 999999999 6899999765 2 345567788999999999999 999999999999999999999
Q ss_pred ceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCccccccee---eecCCCCCC------------CCcCce
Q 001160 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF---IQAPAGRQS------------PLVGET 978 (1134)
Q Consensus 914 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~------------~~~~v~ 978 (1134)
|+.+..+..|...+..++|.|-++++++-+.|...+...+...+...... +....++.. ...--.
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 99999999999999999999999999999999877777766543322111 111111100 001235
Q ss_pred EEEECCCCcEEEEE-----ECCeE-----EEEeC-CCcceeccCCCCCCCCCeEEEEEcc------------------CC
Q 001160 979 KVQFHNDQTHLLVV-----HESQI-----SVYDS-KLECSRSWSPKDALPAPISSAIYSC------------------DG 1029 (1134)
Q Consensus 979 ~~~fspdg~~l~~~-----~d~~v-----~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~------------------dg 1029 (1134)
.++|+|||.+|++. .++.+ ++|+- ..+...... .+-..+...+.|+| -+
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~l--p~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyr 312 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARL--PSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYR 312 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeec--CCCCcceEEEEeeeeEEEeccccccccccccccc
Confidence 67899999999982 13333 45554 222221111 12255666777765 11
Q ss_pred CEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1030 LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1030 ~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
-.+|.+ ....|+|||.++-..++.....+|. ..+.++|++ ||..|+..|.||...+--+...|
T Consensus 313 lvfaiA-t~~svyvydtq~~~P~~~v~nihy~---------~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 313 LVFAIA-TKNSVYVYDTQTLEPLAVVDNIHYS---------AITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred eEEEEe-ecceEEEeccccccceEEEeeeeee---------eecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 234555 4568999999998888877655443 234788998 88999999999987777666555
No 168
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=1.5e-18 Score=173.49 Aligned_cols=249 Identities=17% Similarity=0.262 Sum_probs=194.7
Q ss_pred cccCCcCeEEEEEcCCC--CEEEEEeCCCeEEEEEcCCC-------------CccceeeEEecccCCeeEEEEecCCCcE
Q 001160 404 LNDAAISVNRCVWGPDG--LMLGVAFSKHIVHLYTYNPT-------------GELRQHLEIDAHVGGVNDIAFAHPNKQL 468 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg--~~las~~~dg~i~iwd~~~~-------------~~~~~~~~~~~h~~~v~~l~~s~d~~~~ 468 (1134)
..+|.+.++-+.-++-| .+.|+-+..|.|.||++... ...+.+.++.+|...=+.++|||--..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g- 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG- 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-
Confidence 45688888888887754 45666678999999998531 223456688899999999999994332
Q ss_pred EEEEEcCCCcEEEEECCCCeee---EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc--eeEecCCCCc
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQ---YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNW 543 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~---~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~ 543 (1134)
.++||.--+.|++|...+|... ..|.+|...|-.++|+|..+ ..|++||.||+|+|||++.+.. -.....|.+.
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 5899998999999999987654 35778999999999999987 6999999999999999998743 2344788899
Q ss_pred EEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC---CeeEEEecCccCcceEEEEEeCCC-CEEEEEeCCCeEEEEECCC
Q 001160 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESE---GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDN 619 (1134)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 619 (1134)
|+.+.|+.+..+|++|+. +|++.|||++. ++++..|+-|.. +|+++.|+|.. ..|+++|.|..|.+||+.-
T Consensus 305 VNVISWnr~~~lLasG~D----dGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGD----DGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eeeEEccCCcceeeecCC----CceEEEEEhhhccCCCcceeEEeccC-CeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 999999999998888863 88999999985 678889999888 99999999976 5677788999999999863
Q ss_pred Ce----------------eEEEEeCCCCCCCcceEEEccCC-CEEEEEeCCCcEEEEE
Q 001160 620 MN----------------MLTTVDADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILA 660 (1134)
Q Consensus 620 ~~----------------~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~dg~i~iw~ 660 (1134)
.. +.+.+-.|.+...+..+.|++.- .++++.+.|| +.||.
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 21 11223345455678899999853 4666666675 34443
No 169
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=2.6e-18 Score=172.64 Aligned_cols=249 Identities=15% Similarity=0.198 Sum_probs=188.8
Q ss_pred CeEEEEEcC-----CCCEEEEE---eCCCeEEEEEcC-CCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEE
Q 001160 410 SVNRCVWGP-----DGLMLGVA---FSKHIVHLYTYN-PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1134)
Q Consensus 410 ~V~~i~~sp-----dg~~las~---~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~ 480 (1134)
.|+..+|.. +.++||.. +..|...+.-+. +|+.-.....+.||.++|..++|+|-+.+ .||+||+|.+|.
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~ 107 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVM 107 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEE
Confidence 355555533 45666653 223334443332 33333344456799999999999998877 899999999999
Q ss_pred EEECCCC-------eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCC
Q 001160 481 VWDVVAG-------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG 553 (1134)
Q Consensus 481 iwd~~~~-------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 553 (1134)
||.+..+ +++..+.||+..|..++|+|... +.|++++.|.+|.+|++.+++....+. |..-|+++.|+.||
T Consensus 108 vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 108 VWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG 185 (472)
T ss_pred EEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC
Confidence 9998754 35678899999999999999876 799999999999999999999999888 89999999999999
Q ss_pred CEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe---CCCeEEEEECCCCeeEEEEeCCC
Q 001160 554 TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG---DEFQIKFWDMDNMNMLTTVDADG 630 (1134)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~ 630 (1134)
.++++.+. |..|++||.++++.+..-.+|.+..-..+.|-.+|..+-+|- .+..+-+||..+-+.-..+..-+
T Consensus 186 s~l~Ttck----DKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD 261 (472)
T KOG0303|consen 186 SLLCTTCK----DKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD 261 (472)
T ss_pred ceeeeecc----cceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec
Confidence 99999874 778999999999999988888765555566888888444432 67889999987644322222222
Q ss_pred CCCCcceEEEccCCCEEEEEe-CCCcEEEEECCCch
Q 001160 631 GLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGV 665 (1134)
Q Consensus 631 ~~~~v~~~~~s~d~~~l~~~~-~dg~i~iw~~~~~~ 665 (1134)
....|.---|.+|.++++.++ .|+.||.|.+.+..
T Consensus 262 tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 262 TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 223455556788888877655 49999999998763
No 170
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=4.9e-19 Score=202.33 Aligned_cols=301 Identities=13% Similarity=0.148 Sum_probs=222.2
Q ss_pred cccccCCChhhhhhhcccCCcceeEeeCCCCCCccccCcccc----ceEEEEecCCCCeeEEEEecCCCe---EEEEEeC
Q 001160 295 GMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLT----KTVVRTLNQGSNVMSMDFHPQQQT---ILLVGTN 367 (1134)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~~~~~----~~~~~~l~h~~~V~~v~~spdg~~---llasg~~ 367 (1134)
.+.|+......+......+.+ +..|+.+. .+.++..|... .+.+..+......+.++|.+.|.. ++|.|..
T Consensus 11 ~~awSp~~~~~laagt~aq~~-D~sfst~~-slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQF-DASFSTSA-SLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred eEEecCCCchhhHHHhhhhcc-cccccccc-ccceeeecccCccccccccccccccccceeeeecccCCCccceeecccc
Confidence 455664443344444333322 23333222 33444443322 245666667789999999998876 6899999
Q ss_pred CCcEEEEEccCc---cccccccceeeccccccccccccccccCCcCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCcc
Q 001160 368 VGDISLWEVGSR---ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGEL 443 (1134)
Q Consensus 368 dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~-~las~~~dg~i~iwd~~~~~~~ 443 (1134)
||.|.+||...- .... .......|.+.|..+.|++... +||+|+.||.|.|||+..-+..
T Consensus 89 dG~I~ly~p~~~~~~~~~~----------------~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP 152 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEE----------------VLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP 152 (1049)
T ss_pred CCceEEecchhhccCcchH----------------HHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC
Confidence 999999998752 1110 0112567999999999999655 9999999999999999875433
Q ss_pred ceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCC--CeEEEEeeccCCccEEEEEecCC
Q 001160 444 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA--PVYSVCPHHKESIQFIFSTAIDG 521 (1134)
Q Consensus 444 ~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~--~v~~i~~~~~~~~~~l~s~~~d~ 521 (1134)
.... -....+.|.+++|+..-.+ .|++++.+|.+.|||++..+.+-.+..|.+ .+..++|+|+.. ..+++++.|.
T Consensus 153 ~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a-Tql~~As~dd 229 (1049)
T KOG0307|consen 153 FTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA-TQLLVASGDD 229 (1049)
T ss_pred CCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc-eeeeeecCCC
Confidence 2111 1124567999999987776 899999999999999999988877766554 477899999876 4555555443
Q ss_pred ---eEEEEEccCCCc-eeEecCCCCcEEEEEECCCC-CEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEE
Q 001160 522 ---KIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 596 (1134)
Q Consensus 522 ---~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~ 596 (1134)
.|.+||++.... ...+.+|...|.++.|++.+ .++++++ .|++|.+|+.++++.+..+....+ .+..+.|
T Consensus 230 ~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg----kD~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w 304 (1049)
T KOG0307|consen 230 SAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG----KDNRIICWNPNTGEVLGELPAQGN-WCFDVQW 304 (1049)
T ss_pred CCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc----CCCCeeEecCCCceEeeecCCCCc-ceeeeee
Confidence 499999987655 44667999999999999977 6777776 488899999999999999998555 8899999
Q ss_pred eCCCC-EEEEEeCCCeEEEEECCCCe
Q 001160 597 DTTRN-RFLAAGDEFQIKFWDMDNMN 621 (1134)
Q Consensus 597 ~~~~~-~l~~~~~dg~i~iwd~~~~~ 621 (1134)
+|... .+++++-||.|.|+.+.+..
T Consensus 305 ~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 305 CPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cCCCcchhhhheeccceeeeeeecCC
Confidence 99886 67778999999999987654
No 171
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=3.9e-18 Score=171.40 Aligned_cols=234 Identities=15% Similarity=0.239 Sum_probs=184.8
Q ss_pred ccccCCcCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCcc----ceeeEEecccCCeeEEEEecCCCcEEEEEEcCCC
Q 001160 403 LLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGEL----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~sp-dg~~las~~~dg~i~iwd~~~~~~~----~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~ 477 (1134)
.+.||+++|..++|+| +...||+|+.|.+|.||++..+... .....|.+|...|..++|+|...+ .|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 4679999999999999 7789999999999999999876543 345578899999999999998877 899999999
Q ss_pred cEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCC-cEEEEEECCCCCEE
Q 001160 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCTMMAYSADGTRL 556 (1134)
Q Consensus 478 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l 556 (1134)
+|.+||+.+|+.+-++. |.+.|+++.|+. ||.+|++++.|+.||+||.++++.+..-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 99999999999998987 999999999966 559999999999999999999988887766654 556777888998 6
Q ss_pred EEEeeCCCCCCcEEEEeCCCCee---EEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCee-EEEEeCCCC
Q 001160 557 FSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNM-LTTVDADGG 631 (1134)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~ 631 (1134)
++.+.++-.+.++-+||...-+. ...+... ..|.--.|.+|.+.++.+| .|+.||-|.+.+..+ +..+.....
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS--nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S 308 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTS--NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS 308 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEeccC--CceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc
Confidence 66666666789999999876432 2333333 2466667888888887755 899999999987653 233322222
Q ss_pred CCCcceEEEccC
Q 001160 632 LPASPRLRFNKE 643 (1134)
Q Consensus 632 ~~~v~~~~~s~d 643 (1134)
..+-..+.|-|.
T Consensus 309 ~epQRG~g~mPK 320 (472)
T KOG0303|consen 309 KEPQRGMGFMPK 320 (472)
T ss_pred CCcccccccccc
Confidence 233355666653
No 172
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.9e-18 Score=176.84 Aligned_cols=265 Identities=11% Similarity=0.130 Sum_probs=190.4
Q ss_pred CCeeEEEEecC-------CCeEEEEEeCCCcEEEEEccCccccccccceeeccc---cccccccccccccCCcCeEEEEE
Q 001160 347 SNVMSMDFHPQ-------QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDIS---AASMPLQNALLNDAAISVNRCVW 416 (1134)
Q Consensus 347 ~~V~~v~~spd-------g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~h~~~V~~i~~ 416 (1134)
....|++|..- |+ ++|.|+.|..|.|||+.-...+.- .+.+-... +.........-.+|++.|.+++|
T Consensus 174 afPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~P-~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~ 251 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVLP-CVTLGSKASKKKKKKGKRSNSASGHTDAVLALSW 251 (463)
T ss_pred CcchhhhhhhcCCCCCCCcc-eEEEeccCceeEEecccccccccc-ceeechhhhhhhhhhcccccccccchHHHHHHHh
Confidence 34456666432 33 899999999999999863322110 00000000 00000111224579999999999
Q ss_pred cCC-CCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeee-EEec
Q 001160 417 GPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YTFE 494 (1134)
Q Consensus 417 spd-g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~-~~~~ 494 (1134)
+.+ ...||+||.|.+|++||+.++++.. .+..|.+.|.+++|.|.... +|++|+.|++|.+.|.+..... ..+
T Consensus 252 n~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~w- 326 (463)
T KOG0270|consen 252 NRNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEW- 326 (463)
T ss_pred ccccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceE-
Confidence 985 5589999999999999999998776 67789999999999998776 8999999999999999853322 222
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC-CceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEe
Q 001160 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1134)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1134)
...+.|-.++|.+... ..++++..||+++-+|++.. ++...+..|...|.++++++....+++.+. .++.+.+|+
T Consensus 327 k~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s---~d~~Vklw~ 402 (463)
T KOG0270|consen 327 KFDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS---TDKVVKLWK 402 (463)
T ss_pred EeccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc---ccceEEEEe
Confidence 2467899999988765 67888899999999999987 667899999999999999998776554432 488999999
Q ss_pred CCCCee--EEEecCccCcceEEEEEeCCCCE-EEEEeCCCeEEEEECCCCeeE
Q 001160 574 ESEGAI--KRTYSGFRKRSLGVVQFDTTRNR-FLAAGDEFQIKFWDMDNMNML 623 (1134)
Q Consensus 574 ~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~ 623 (1134)
+..... +..-...-. ...|.++.|+-.+ ++.||..+.+++||+.+...+
T Consensus 403 ~~~~~~~~v~~~~~~~~-rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 403 FDVDSPKSVKEHSFKLG-RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ecCCCCccccccccccc-ceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 875433 221111111 4667778887755 555778888999999876543
No 173
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.4e-16 Score=173.38 Aligned_cols=631 Identities=12% Similarity=0.113 Sum_probs=355.4
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCC------
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD------ 419 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd------ 419 (1134)
...-.++.|+|.| ++|.|+ ...|.+-|..+-+.+.. +.-|...|+.+.|.|-
T Consensus 15 ~sN~~A~Dw~~~G--LiAygs-hslV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~l 72 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG--LIAYGS-HSLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRDL 72 (1062)
T ss_pred cccccccccCccc--eEEEec-CceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchhc
Confidence 4457789999999 677776 45888889888877764 5669999999999873
Q ss_pred C------CEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEec---CCCcEEEEEEcCCCcEEEEECCCCeee
Q 001160 420 G------LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH---PNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1134)
Q Consensus 420 g------~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~---d~~~~~l~sg~~d~~i~iwd~~~~~~~ 490 (1134)
+ -+||++...|.|.+||...+..+. .++.|..++..++|-+ +.+. +|+.-....+|.+|+..+|+..
T Consensus 73 lS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~ 148 (1062)
T KOG1912|consen 73 LSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKF 148 (1062)
T ss_pred cCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCcee
Confidence 1 268888889999999999876554 6778899999999975 3333 5666666789999999999998
Q ss_pred EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCC------ceeEecCC-CC---------------------
Q 001160 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG------SRVDYDAP-GN--------------------- 542 (1134)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~------~~~~~~~~-~~--------------------- 542 (1134)
...........|+.+.|-....+.+ -+..|.+.+-+.-... ....+... ..
T Consensus 149 Wk~~ys~~iLs~f~~DPfd~rh~~~-l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa 227 (1062)
T KOG1912|consen 149 WKYDYSHEILSCFRVDPFDSRHFCV-LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASA 227 (1062)
T ss_pred eccccCCcceeeeeeCCCCcceEEE-EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcch
Confidence 8777666677778888765534444 4445555555432111 11111111 00
Q ss_pred ----cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCC--CEEEEEeCCCeEEEEE
Q 001160 543 ----WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFWD 616 (1134)
Q Consensus 543 ----~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd 616 (1134)
....++|+|.-+.++.... ...+.++|++-..++....-..+ .+.-+.+-|++ ..+++.-.||.+.+|-
T Consensus 228 ~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 228 YFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred hHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 0113467786665554444 44599999998887777665554 45567777776 5688899999999997
Q ss_pred CCC----------------CeeEEEEeCCCCCCCcceEEEccC-CCEEEEEeCCCcEEEEECCCchhhhhhhcCCccccc
Q 001160 617 MDN----------------MNMLTTVDADGGLPASPRLRFNKE-GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKN 679 (1134)
Q Consensus 617 ~~~----------------~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 679 (1134)
.+. ++....+.......+ ...+..|. ...++.--.+|.+.+|.+.+|........+......
T Consensus 303 rk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp-~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~ 381 (1062)
T KOG1912|consen 303 RKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRP-VIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVL 381 (1062)
T ss_pred eeccCccccccchhhccccccceEEEeechhccc-ceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccc
Confidence 654 222222221111111 22222342 445555566788889988876211111111111000
Q ss_pred CCCCCCCCCCCccccccCCCccc--ccccCCCCCCCC-------CCCCCcccCccCCCCccccccc--ccccccc-cCcc
Q 001160 680 RCPSEPISSKPLTINALGPASNV--SAAIAPTLERPD-------RGPPAVSISSLGTIDGSRLVDV--KPRVAED-VDKI 747 (1134)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~i 747 (1134)
-|.+.+....+ -.++.++.++.. +..+.+...........-.+.+ -.++.|. .|+|
T Consensus 382 ------------pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV 449 (1062)
T KOG1912|consen 382 ------------PFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTV 449 (1062)
T ss_pred ------------cccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceE
Confidence 01111111111 123344444311 1111111111111111111111 1233344 4999
Q ss_pred ceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCC
Q 001160 748 KSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 827 (1134)
Q Consensus 748 ~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 827 (1134)
.++|+.+....... ..|...|.++.|..+...+-.+.+. .- +........+.+-|+.+|.
T Consensus 450 ~vvdvst~~v~~~f-------svht~~VkgleW~g~sslvSfsys~-~n------------~~sg~vrN~l~vtdLrtGl 509 (1062)
T KOG1912|consen 450 DVVDVSTNAVAASF-------SVHTSLVKGLEWLGNSSLVSFSYSH-VN------------SASGGVRNDLVVTDLRTGL 509 (1062)
T ss_pred EEEEecchhhhhhh-------cccccceeeeeeccceeEEEeeecc-cc------------ccccceeeeEEEEEccccc
Confidence 99999874332221 2378889999988777643332221 00 0000001123344666665
Q ss_pred ccccc-cCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEc-CC------------
Q 001160 828 LMTND-INESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFH-PQ------------ 892 (1134)
Q Consensus 828 ~~~~~-~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s-~~------------ 892 (1134)
..... +++ .. +.+|+.+..|..|+|++... +.-+.+||+++..+++...-.-.-|+.+.|+ |.
T Consensus 510 sk~fR~l~~-~d-espI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q 587 (1062)
T KOG1912|consen 510 SKRFRGLQK-PD-ESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQ 587 (1062)
T ss_pred ccccccCCC-CC-cCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhh
Confidence 44322 122 23 88999999999999999998 8899999998876655544334448889988 31
Q ss_pred ---CCcEEEEEeCCCcEEEEEcC-CceEEE-------EecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccc
Q 001160 893 ---DNNIIAIGMEDSSVQIYNVR-VDEVKT-------KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961 (1134)
Q Consensus 893 ---~~~~lasg~~dg~i~iwd~~-~~~~~~-------~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~ 961 (1134)
..+..+..+ +..+++.+. .+.... ..+...-.+.+|+| .+..|+.|..+|.+.+||+.......
T Consensus 588 ~sms~n~vv~ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg- 662 (1062)
T KOG1912|consen 588 SSMSENLVVLDS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRG- 662 (1062)
T ss_pred hhhhhceeeecc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccC-
Confidence 012333333 223333322 111111 11111123445677 46689999999999999976543211
Q ss_pred eeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCC-cceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 001160 962 RFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKL-ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA 1040 (1134)
Q Consensus 962 ~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~-~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~ 1040 (1134)
......+ .......-+-|....+++-....+.+||.+. ..+..+ .+..-...+..+.++.....++. .|.+
T Consensus 663 --~~d~p~~---ra~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~si-ag~dssfrlldvdlc~~~~~~l~--~d~~ 734 (1062)
T KOG1912|consen 663 --VRDSPDP---RAHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSI-AGMDSSFRLLDVDLCEKSPLVLP--NDNK 734 (1062)
T ss_pred --ccCCCCc---hhhheecccCCCCceEEEEecCcceecccccceeeeee-ccCCcceEEEEEEecccCceecC--CCCc
Confidence 1111111 1223344445654455555666788999843 333333 22222445555566555444443 4558
Q ss_pred EEEEeCCCcceeeecC
Q 001160 1041 IGVFDAETLRFRCRIG 1056 (1134)
Q Consensus 1041 I~vwd~~~~~~~~~~~ 1056 (1134)
+++-.+..........
T Consensus 735 ~Rf~~m~mks~~ll~~ 750 (1062)
T KOG1912|consen 735 ERFRVMPMKSPPLLPK 750 (1062)
T ss_pred eeEEeccccCCccccC
Confidence 8887777655444333
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=3.6e-17 Score=160.26 Aligned_cols=210 Identities=16% Similarity=0.247 Sum_probs=158.0
Q ss_pred eeEEEEecCCCcEEEEEEcCCCcEEEEECCCC-------eee-----EEecC-CCCCeEEEEeec-----cCCccEEEEE
Q 001160 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-------RKQ-----YTFEG-HEAPVYSVCPHH-----KESIQFIFST 517 (1134)
Q Consensus 456 v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~-------~~~-----~~~~~-h~~~v~~i~~~~-----~~~~~~l~s~ 517 (1134)
...+.|+|||. .|++-+.|..+.+|++... ..+ .+++- ....|...+|-+ .++..++++.
T Consensus 52 ~kgckWSPDGS--ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 52 LKGCKWSPDGS--CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hccceeCCCCc--eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 45689999999 8999999999999997521 110 11111 234466666542 2344789999
Q ss_pred ecCCeEEEEEccCCCceeEecCCCC-----cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeC-CCCeeEEEecC------
Q 001160 518 AIDGKIKAWLYDYLGSRVDYDAPGN-----WCTMMAYSADGTRLFSCGTSKEGESHLVEWNE-SEGAIKRTYSG------ 585 (1134)
Q Consensus 518 ~~d~~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~-~~~~~~~~~~~------ 585 (1134)
+.+.-|++||.-+++....+..-.+ .-.+++|+|||..|+++. ...|+++|+ +.|.-...+..
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-----krcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-----KRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-----cceEEEeeccCCCCCCcchhhhhcccc
Confidence 9999999999999888776654332 456899999999999985 678999999 55553322211
Q ss_pred ccCcceEEEEEeCCCC-EEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC-CCcEEEEECCC
Q 001160 586 FRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS-DNGIKILANSD 663 (1134)
Q Consensus 586 ~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~-dg~i~iw~~~~ 663 (1134)
...+.+.+++|+|... .+++|+....+-|+.-..+.++..+.+|. ..|+.+.|.++|+.|++|.. +-.|..||++.
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~--gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHG--GGVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccC--CCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 1233788999999764 78889999999999999999999988665 48999999999999999887 67899999987
Q ss_pred chhhhhhhcCC
Q 001160 664 GVRLLRMLEGR 674 (1134)
Q Consensus 664 ~~~~~~~~~~~ 674 (1134)
....+..+..|
T Consensus 283 ~~~pv~~L~rh 293 (406)
T KOG2919|consen 283 SRDPVYALERH 293 (406)
T ss_pred ccchhhhhhhh
Confidence 75666555554
No 175
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.79 E-value=2.4e-17 Score=161.65 Aligned_cols=378 Identities=14% Similarity=0.170 Sum_probs=246.8
Q ss_pred EEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEE-EeCCCeEEEEECCCCeeEE
Q 001160 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA-AGDEFQIKFWDMDNMNMLT 624 (1134)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~ 624 (1134)
-.+|||+|++++++. +..+.+-|..+-+..+.|..-. .|.-+.|..|.-++++ ...++.|.+|++...+-..
T Consensus 13 ~c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cld--ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCLD--KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHHH--HhhheeeeccceeeeeeeeccceEEEEEeecceeEE
Confidence 357999999999997 4468888988877776666543 4667889998888777 4588899999999888777
Q ss_pred EEeCCCCCCCcceEEEccCCCEEE-EEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccc
Q 001160 625 TVDADGGLPASPRLRFNKEGSLLA-VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 703 (1134)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~d~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1134)
.++.. ...+.+++|||||+.+. +..-+-.|.+|.+.+.....
T Consensus 86 kIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~----------------------------------- 128 (447)
T KOG4497|consen 86 KIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL----------------------------------- 128 (447)
T ss_pred EeccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-----------------------------------
Confidence 77643 45789999999996655 45558899999987651100
Q ss_pred cccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecC
Q 001160 704 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS 783 (1134)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 783 (1134)
+.. ....+..++|+||
T Consensus 129 ------------------------------------------------------------~~~----pK~~~kg~~f~~d 144 (447)
T KOG4497|consen 129 ------------------------------------------------------------LPH----PKTNVKGYAFHPD 144 (447)
T ss_pred ------------------------------------------------------------ecc----cccCceeEEECCC
Confidence 000 1123478899999
Q ss_pred CcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe---C
Q 001160 784 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS---G 860 (1134)
Q Consensus 784 g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s---d 860 (1134)
|++.+..+.-.....+++. ..+-|. ++.. +.. . .-..+.+.|+|||..+|+-. +
T Consensus 145 g~f~ai~sRrDCkdyv~i~--------------~c~~W~-----ll~~-f~~--d-T~DltgieWsPdg~~laVwd~~Le 201 (447)
T KOG4497|consen 145 GQFCAILSRRDCKDYVQIS--------------SCKAWI-----LLKE-FKL--D-TIDLTGIEWSPDGNWLAVWDNVLE 201 (447)
T ss_pred CceeeeeecccHHHHHHHH--------------hhHHHH-----HHHh-cCC--C-cccccCceECCCCcEEEEecchhh
Confidence 9987766553111111100 001121 1111 111 1 45567899999999998764 2
Q ss_pred CeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccc--------------
Q 001160 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-------------- 926 (1134)
Q Consensus 861 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~-------------- 926 (1134)
-.|..|.. .-.+..++|+| .+++|++|+.|+.+||.+--+.+....+- |-..
T Consensus 202 ykv~aYe~------------~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~efl-hl~s~~dp~~~~~~ke~~ 267 (447)
T KOG4497|consen 202 YKVYAYER------------GLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFL-HLCSYHDPTLHLLEKETF 267 (447)
T ss_pred heeeeeee------------ccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhc-cchhccCchhhhhhhhhc
Confidence 33433332 23578899999 99999999999999998766665544432 2111
Q ss_pred ------eEEEEEecCCCEEEEEcCCCcEEEEeCCCc--c----cccceeeecCCCCCCCCcCceEEEECCCCcEEEEEEC
Q 001160 927 ------ITGLAFSPTLNALVSSGADAQLCMWSIDKW--E----KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE 994 (1134)
Q Consensus 927 ------i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~--~----~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d 994 (1134)
..++.|.|. |-...+|..+.- + .++...++.+.....+.-++..++||+|..++++-.|
T Consensus 268 ~~~ql~~~cLsf~p~---------~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd 338 (447)
T KOG4497|consen 268 SIVQLLHHCLSFTPT---------DLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND 338 (447)
T ss_pred chhhhcccccccCCC---------ccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecC
Confidence 123334332 222333433210 0 0111122222333334467889999999999999655
Q ss_pred ---CeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCc
Q 001160 995 ---SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAH 1071 (1134)
Q Consensus 995 ---~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1134)
+.+.+||+....+...... ..+|....|.|....|+.+.....+++|.......++.-. . .-.
T Consensus 339 ~~PnalW~Wdlq~l~l~avLiQ---k~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~-~----------GF~ 404 (447)
T KOG4497|consen 339 KYPNALWLWDLQNLKLHAVLIQ---KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK-K----------GFN 404 (447)
T ss_pred CCCceEEEEechhhhhhhhhhh---ccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC-C----------Cce
Confidence 5799999955555544444 5789999999998888888888889999988644443221 1 144
Q ss_pred cEEEeecCCCCCEEEEEeCCC
Q 001160 1072 PLVIAPHPSEPNQIALGMSDG 1092 (1134)
Q Consensus 1072 ~~~~~~~~~d~~~l~s~~~Dg 1092 (1134)
...+.|.- +|..++..+.|.
T Consensus 405 i~~l~W~~-~g~~i~l~~kDa 424 (447)
T KOG4497|consen 405 IQKLQWLQ-PGEFIVLCGKDA 424 (447)
T ss_pred eeeEEecC-CCcEEEEEcCCc
Confidence 55788887 678888888886
No 176
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.7e-16 Score=169.26 Aligned_cols=473 Identities=12% Similarity=0.173 Sum_probs=297.1
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCC----------CcEEEEEEcCCCc
Q 001160 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPN----------KQLCIVTCGDDKM 478 (1134)
Q Consensus 409 ~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~----------~~~~l~sg~~d~~ 478 (1134)
..-.++.|+|.| +||.|+. ..|.+-|..+-+.+. .+.-|...|+.+.|.|.. .+++||++...|.
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 336788899887 6666654 458888887766665 677899999999998732 3468899999999
Q ss_pred EEEEECCCCeeeEEecCCCCCeEEEEeeccCCc--cEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCC-CCE
Q 001160 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI--QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD-GTR 555 (1134)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~ 555 (1134)
|.+||...+..+..+..|..++..++|.+..+. ..|+.-....++.+|+..+++.............|+.+.|- .+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 999999999999999999999999999876553 46777788899999999999999988877777888888883 344
Q ss_pred EEEEeeCCCCCCcEEEEeCC-------CCeeEEEecCccC-----------c-----c--------eEEEEEeCCCCEEE
Q 001160 556 LFSCGTSKEGESHLVEWNES-------EGAIKRTYSGFRK-----------R-----S--------LGVVQFDTTRNRFL 604 (1134)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~-------~~~~~~~~~~~~~-----------~-----~--------v~~~~~~~~~~~l~ 604 (1134)
+..-+. .|.+.+-+.- .|+..+.-..|.+ . + ...++|+|.-+.++
T Consensus 171 ~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 171 FCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred EEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 443332 3334433321 1222222111111 0 0 11256788776666
Q ss_pred EEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCC--CEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCC
Q 001160 605 AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG--SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCP 682 (1134)
Q Consensus 605 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 682 (1134)
.......+.++|++-..++.......+ .+.-+.+-|++ ..|++...||.+.+|--.........-..+-
T Consensus 247 fi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l------- 317 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASL------- 317 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhh-------
Confidence 666788899999999988888877654 34456666654 5789999999999997543211111100000
Q ss_pred CCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCcccee
Q 001160 683 SEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK 762 (1134)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 762 (1134)
+.+- ...+.+ .+
T Consensus 318 --------------------------~~dl-------------------------------~~Q~~~-----------vr 329 (1062)
T KOG1912|consen 318 --------------------------SMDL-------------------------------GEQVHV-----------VR 329 (1062)
T ss_pred --------------------------cccc-------------------------------ccceEE-----------Ee
Confidence 0000 000000 00
Q ss_pred EeecCCcccccceEEEEEecC-CcceEEeeccCeeEEeecccccCCCCCCccccc--CcccccCCCCCcccccc----CC
Q 001160 763 ALRLPDSIAASKVVRLIYTNS-GLSLLALASNAVHKLWKWQRTERNPSGKATANV--APQLWQPPSGTLMTNDI----NE 835 (1134)
Q Consensus 763 ~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~--~~~~w~~~~~~~~~~~~----~~ 835 (1134)
.. .+..+...+..|. ...++..-++|.+.+|.+..+..++++...... .+--++..+..+....+ ..
T Consensus 330 ~m------~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~d 403 (1062)
T KOG1912|consen 330 PM------EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDD 403 (1062)
T ss_pred ec------hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhc
Confidence 00 1111222222333 334555556777888888765544443321110 00000111100000000 01
Q ss_pred CCCCCCceEEEEecc-----------CCC-------EEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcE
Q 001160 836 SKPTEESAACIALSK-----------NDS-------YVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNI 896 (1134)
Q Consensus 836 ~~h~~~~i~~~~~s~-----------dg~-------~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~ 896 (1134)
+.| ....++....| -|+ ++|.|. .|+|.++|+.++...+.+..|++.|.++.|.. ..++
T Consensus 404 g~h-~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~ssl 481 (1062)
T KOG1912|consen 404 GSH-SSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-NSSL 481 (1062)
T ss_pred CCC-CCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc-ceeE
Confidence 124 44444443332 222 577777 79999999999999999999999999999986 4444
Q ss_pred EEEEe---------CCCcEEEEEcCCceEE--EEec-CcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceee
Q 001160 897 IAIGM---------EDSSVQIYNVRVDEVK--TKLK-GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFI 964 (1134)
Q Consensus 897 lasg~---------~dg~i~iwd~~~~~~~--~~l~-~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~ 964 (1134)
+-.+. .-+.+.|-|+.+|... +.++ ....+|+.+..|.-+++|+....|.-+.+||+++...+..+..
T Consensus 482 vSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~ 561 (1062)
T KOG1912|consen 482 VSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSL 561 (1062)
T ss_pred EEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhh
Confidence 43222 2245788899988532 2222 3456899999999999999999999999999988665433222
Q ss_pred ecCCCCCCCCcCceEEEEC
Q 001160 965 QAPAGRQSPLVGETKVQFH 983 (1134)
Q Consensus 965 ~~~~~~~~~~~~v~~~~fs 983 (1134)
..+ -++.+.|+
T Consensus 562 a~P--------~it~leWs 572 (1062)
T KOG1912|consen 562 ALP--------LITVLEWS 572 (1062)
T ss_pred cCC--------cEEEEeec
Confidence 211 26677777
No 177
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=3.9e-16 Score=162.84 Aligned_cols=490 Identities=11% Similarity=0.125 Sum_probs=290.8
Q ss_pred cCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeE-EEEe-----cCCCcEEEEEEcCCCcE
Q 001160 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVND-IAFA-----HPNKQLCIVTCGDDKMI 479 (1134)
Q Consensus 406 ~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~-l~~s-----~d~~~~~l~sg~~d~~i 479 (1134)
.|...|.|+.|+.+...+.+++.+-.+.-||+.+... ... .+ ...-|.. +..- ..+..-.++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~-~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVA-KL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhh-hC--CcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 3677788999999888877776666566666654322 110 00 1111111 1110 11111268888999999
Q ss_pred EEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEE
Q 001160 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1134)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1134)
.|.+ +.++..+.+..|.+.+.+-.|+|++ .-|++++.||.|++|.- ++-....+......|+|++|.|+.+.++.|
T Consensus 88 ~il~-k~~rVE~sv~AH~~A~~~gRW~~dG--tgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 88 VILN-KSARVERSISAHAAAISSGRWSPDG--AGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred EEec-ccchhhhhhhhhhhhhhhcccCCCC--ceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 9998 7888888899999999999998865 77999999999999973 333344455566799999999999988877
Q ss_pred eeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001160 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1134)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1134)
. .+.+.+=.+.....+-..+.|.+ -|.++.|++..+.+++||+|-..++||... ..+..-..|. -+|++++
T Consensus 164 ~-----g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~e--y~ITSva 234 (737)
T KOG1524|consen 164 Q-----GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAEE--YAITSVA 234 (737)
T ss_pred c-----CCeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeecccC-cccccCChhc--cceeeee
Confidence 4 45688878877777888888887 899999999999999999999999999864 4444444443 4899999
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCC
Q 001160 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (1134)
Q Consensus 640 ~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1134)
|.|| +.++.++.+ ++|+=..
T Consensus 235 ~npd-~~~~v~S~n-t~R~~~p---------------------------------------------------------- 254 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-TARFSSP---------------------------------------------------------- 254 (737)
T ss_pred eccc-cceeeeeee-eeeecCC----------------------------------------------------------
Confidence 9999 566655543 4442100
Q ss_pred cccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEe
Q 001160 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLW 799 (1134)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw 799 (1134)
..+.|..++||+||..++.+++.|.+.+=
T Consensus 255 ---------------------------------------------------~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 255 ---------------------------------------------------RVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ---------------------------------------------------CccceEEEEEcCCCceeeccccCceEEEe
Confidence 23567889999999999999998877653
Q ss_pred eccccc-CCCCCCc--ccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEE
Q 001160 800 KWQRTE-RNPSGKA--TANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTM 876 (1134)
Q Consensus 800 ~~~~~~-~~~~~~~--~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~ 876 (1134)
-.-... ..-+.+. .....+.+-|+.++..-...+ ...+...++ .-.+|+++....|++|.-........
T Consensus 284 ~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v~d~LE~------p~rv~k~sL--~Y~hLvvaTs~qvyiys~knwntpii 355 (737)
T KOG1524|consen 284 YAIEQQLVSGNLKATSKSRKSITVRDVATGVQDILEF------PQRVVKFSL--GYGHLVVATSLQVYIYSEKNWNTPII 355 (737)
T ss_pred eeehhhhhhccceeEeeccceEEeehhhhhHHHHhhC------ccceeeeee--ceeEEEEEeccEEEEEecCCccCcEE
Confidence 221111 1111111 111234455555554422111 445555543 34567777678889988776555555
Q ss_pred ecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEe--cCcccc---eEEEEEecCCCEEEEEc--CCCcEE
Q 001160 877 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL--KGHQNR---ITGLAFSPTLNALVSSG--ADAQLC 949 (1134)
Q Consensus 877 ~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l--~~h~~~---i~~l~~s~d~~~l~s~~--~D~~i~ 949 (1134)
+.+....+.-+.-+. ..+++ .+.-+|.+|..+. +..... .+..-. -..+... ...|+.-. ....+.
T Consensus 356 idgre~tr~lieq~e--k~fli--~dgsSi~lytyeg-R~~~np~~Pg~~~dlL~~rtlsLa--ndtLaird~ad~kvlh 428 (737)
T KOG1524|consen 356 IDGREDTRNLIEQGE--KYFLI--LDGSSIWLYTYEG-RLHLNPRYPGSQIDLLTWRTLSLA--NDTLAIRDNADPKVLH 428 (737)
T ss_pred EeccccchhHhhhhh--hheEE--ecCcEEEEEEecC-ceecCCCCCCcccccccceeeecc--cceEEeecCCCCeeEE
Confidence 554333332222221 12222 2344677776542 222221 111100 0122222 22344322 234577
Q ss_pred EEeC-CCccccccee-eecCCCCCCCCcCceEEEE----CCCCcEEEE-EECCeEEEEeC-CCcceeccCCCCCCCCCeE
Q 001160 950 MWSI-DKWEKLKSRF-IQAPAGRQSPLVGETKVQF----HNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPIS 1021 (1134)
Q Consensus 950 iWd~-~~~~~~~~~~-~~~~~~~~~~~~~v~~~~f----spdg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~ 1021 (1134)
++|. .+|+.+..-- +. |. ..+..++. .++.+.++. -.++.+.+=.+ +...-..+... ..-|.
T Consensus 429 lFd~istgk~qgDgk~L~----hk---~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~Ki---GTmVh 498 (737)
T KOG1524|consen 429 LFDLISTGKRQGDGKSLR----HK---QQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKI---GTMVH 498 (737)
T ss_pred eccCCCCCcccCCccccc----hh---hhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhh---hhhhh
Confidence 8888 6665321100 10 00 12222222 222333333 33444444443 11111111111 45678
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCCCc
Q 001160 1022 SAIYSCDGLLVYAGFCDGAIGVFDAETL 1049 (1134)
Q Consensus 1022 ~v~~s~dg~~l~~~~~dg~I~vwd~~~~ 1049 (1134)
.++|+.-.+ +++|-.|+++.||-..+-
T Consensus 499 tLawndttN-iLcglqDt~fsVWy~pn~ 525 (737)
T KOG1524|consen 499 TLAWNDTTN-ILCGLQDTCFSVWYYPNE 525 (737)
T ss_pred hhhhccccc-eeeeeccceEEEEEcCCc
Confidence 889965544 677889999999987753
No 178
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.8e-17 Score=163.98 Aligned_cols=292 Identities=12% Similarity=0.121 Sum_probs=204.9
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe--cCCC-CcEE
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY--DAPG-NWCT 545 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--~~~~-~~v~ 545 (1134)
.+|++-..|.|++||..+++.+..|+++...++.+.|........+.+|+.||+|++||++.......+ ..+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 688888899999999999999999999999999999987655588999999999999999987765433 3333 4677
Q ss_pred EEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee-EEEecCccCcceEEEEEeCCC-CEEEEEeCCCeEEEEECCCCe--
Q 001160 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMN-- 621 (1134)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-- 621 (1134)
+++.+-+++.++++..--..+-.+.+||++..+. +..+...+...|++++|+|.. +.|++||.||.|.+||+....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 8887778888888775445577899999998766 666654444499999999976 788899999999999997643
Q ss_pred --eEEEEeCCCCCCCcceEEEccCC-CEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCC
Q 001160 622 --MLTTVDADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGP 698 (1134)
Q Consensus 622 --~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1134)
++.++. ....|.++.|..++ +.|.+-+..++..+|+++.+. ....+....... .
T Consensus 202 DaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~-~~~~~~~~~~~~-----------------~-- 258 (376)
T KOG1188|consen 202 DALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS-EETWLENPDVSA-----------------D-- 258 (376)
T ss_pred hhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCC-hhhcccCccchh-----------------h--
Confidence 223332 22358899999877 457888889999999999884 222222211000 0
Q ss_pred CcccccccCCCCCCCCCCCCCcccCccCCCCcc-cccccccccccc-cCccceeccCCCCCccceeEeecCCcccccceE
Q 001160 699 ASNVSAAIAPTLERPDRGPPAVSISSLGTIDGS-RLVDVKPRVAED-VDKIKSWRIPDISDPSQIKALRLPDSIAASKVV 776 (1134)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~ 776 (1134)
..+.-+. ..+-.+.. ....+...+++. .++..++-+.................+|..-|+
T Consensus 259 -------d~r~~~~-----------~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR 320 (376)
T KOG1188|consen 259 -------DLRKEDN-----------CDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVR 320 (376)
T ss_pred -------hHHhhhh-----------hhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHH
Confidence 0000000 00000111 011122334444 366666665544444444444555566888889
Q ss_pred EEEEecCCcceEEeeccCeeEEeec
Q 001160 777 RLIYTNSGLSLLALASNAVHKLWKW 801 (1134)
Q Consensus 777 ~~~~s~~g~~l~~~~~dg~v~vw~~ 801 (1134)
++.|...+..+.+|+.||.+.+|..
T Consensus 321 ~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 321 DILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred HHhhhcccceeeccCCCceEEEEec
Confidence 9999999999999999999999974
No 179
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=6.1e-16 Score=145.57 Aligned_cols=288 Identities=14% Similarity=0.180 Sum_probs=195.1
Q ss_pred cceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCC
Q 001160 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1134)
Q Consensus 773 ~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg 852 (1134)
..|.+-+++|.+++|+++..+|.|.+..+..-.. +.+ ...|+......+ .| .++++.++|. .
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s---~sa----------~~~gk~~iv~eq--ah-dgpiy~~~f~--d 72 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS---GSA----------EPPGKLKIVPEQ--AH-DGPIYYLAFH--D 72 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhc---ccc----------CCCCCcceeecc--cc-CCCeeeeeee--h
Confidence 3455668899999999999999999998764211 000 011222221223 38 9999999998 4
Q ss_pred CEEEEEeCCeEEEEECCCCeE------EEEec-------CCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEE
Q 001160 853 SYVMSASGGKVSLFNMMTFKV------MTMFM-------SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 919 (1134)
Q Consensus 853 ~~la~~sdg~i~vwd~~~~~~------~~~~~-------~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~ 919 (1134)
.+|++|+||.|+=|....... +.... .....|+++-..|..+.++ .++.|+.++-||+++|+...+
T Consensus 73 ~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 73 DFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred hheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecCCeEEEEEEecCCEEEEE
Confidence 688888899999998654221 11111 1235689999999555555 455899999999999999999
Q ss_pred ecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCC--CCcCceEEEECCCCcEEEEEECCeE
Q 001160 920 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS--PLVGETKVQFHNDQTHLLVVHESQI 997 (1134)
Q Consensus 920 l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~fspdg~~l~~~~d~~v 997 (1134)
++||++.|-+++--.....+.||+.||++|+||.++++..+. +........ +..+-.-.+..-+..+|+++....+
T Consensus 152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~--ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~l 229 (325)
T KOG0649|consen 152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM--IEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKL 229 (325)
T ss_pred EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEE--eccccChhhcCcccCceeEEEeccCceEEecCCCce
Confidence 999999999998744445688999999999999999886542 222221111 0011122456667789999989999
Q ss_pred EEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEe
Q 001160 998 SVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIA 1076 (1134)
Q Consensus 998 ~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1076 (1134)
.+|.+ ...+...+.. ..++..+.|-.| .++++++.++|.-|.+. |.+...++.. ++..+..+..
T Consensus 230 slwhLrsse~t~vfpi----pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~--------s~~c~s~s~~ 294 (325)
T KOG0649|consen 230 SLWHLRSSESTCVFPI----PARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVE--------STACYSASWQ 294 (325)
T ss_pred eEEeccCCCceEEEec----ccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCC--------ccceeeeccc
Confidence 99999 5555554443 567888888554 57778888899999987 5555554432 1222323333
Q ss_pred ecCCCCCEEEEEeCCCcEEEEe
Q 001160 1077 PHPSEPNQIALGMSDGAVHVVE 1098 (1134)
Q Consensus 1077 ~~~~d~~~l~s~~~Dg~v~vW~ 1098 (1134)
-+| -++|-.++..+.+.+..
T Consensus 295 ~~p--~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 295 TSP--IKFISIAGFSNKLHILK 314 (325)
T ss_pred CCc--eEEEEecccceeeeeee
Confidence 334 35666677777777763
No 180
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.75 E-value=3.9e-16 Score=162.89 Aligned_cols=270 Identities=15% Similarity=0.208 Sum_probs=189.5
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEE--cCCCCE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW--GPDGLM 422 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~--spdg~~ 422 (1134)
|...|.|+.|+.+.. ++.+++ |..+.+|.-.+.......... ....+. ..| +....- -.....
T Consensus 13 ~~e~vc~v~w~~~ee-i~~~~d-Dh~~~~~~~~~~~s~~~~~~p-------~df~pt---~~h---~~~rs~~~g~~~d~ 77 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEE-IYFVSD-DHQIFKWSDVSRDSVEVAKLP-------DDFVPT---DMH---LGGRSSGGGKGSDT 77 (737)
T ss_pred cceeEEeecccccce-EEEecc-CceEEEeecccchhhhhhhCC-------cccCCc---ccc---ccccccCCCCCcce
Confidence 566788999999987 555544 666666654433322110000 000000 011 000000 012347
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEE
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1134)
++.++.||.+.+.+-.. +.-+ ...+|.+.|.+-.|+|||. -|+|.++||.|++|. ++|-...++.....+|.|
T Consensus 78 ~~i~s~DGkf~il~k~~-rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c 150 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKSA-RVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRC 150 (737)
T ss_pred EEEEcCCceEEEecccc-hhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeEE
Confidence 88899999999987543 2222 5668999999999999999 799999999999999 788766666667789999
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE
Q 001160 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1134)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1134)
++|.|+.+ ..+.+.+ +.+.+=-+.....+.....|.+-|.++.|++..+.+++++. |-..++||.. |..+..
T Consensus 151 ~~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf~ 222 (737)
T KOG1524|consen 151 ARWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLFT 222 (737)
T ss_pred EEECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-Cccccc
Confidence 99998764 4555443 45555566666778889999999999999999999999985 7889999965 666666
Q ss_pred ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEE
Q 001160 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1134)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~ 660 (1134)
-..|.. +|++++|+|+ +.++.++. .+++ +.. ...+.|..++||+||..++.|+..|.+.+=.
T Consensus 223 S~~~ey-~ITSva~npd-~~~~v~S~-nt~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 223 SAAEEY-AITSVAFNPE-KDYLLWSY-NTAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred CChhcc-ceeeeeeccc-cceeeeee-eeee------------ecC-CCccceEEEEEcCCCceeeccccCceEEEee
Confidence 666665 8999999999 55555553 2333 211 1234789999999999999999998876543
No 181
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=9.5e-18 Score=176.98 Aligned_cols=250 Identities=14% Similarity=0.180 Sum_probs=190.6
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-----CCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCc
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN-----PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~-----~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~ 478 (1134)
+..|.+.|..++|.|-...|++++.||++.+|+++ ....+.++.+|.+|.++|.|+++.++++ .+++|+.||+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg~ 367 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDGT 367 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCce
Confidence 56799999999999999999999999999999993 2344667789999999999999999999 8999999999
Q ss_pred EEEEECCC------C----eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC--CCcEEE
Q 001160 479 IKVWDVVA------G----RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--GNWCTM 546 (1134)
Q Consensus 479 i~iwd~~~------~----~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~v~~ 546 (1134)
|+.|++.. . .....+.||.+.|+.++++... ..|++++.||++++|+...... ..+... .+...+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 99996541 1 1234678999999999999887 6799999999999998765544 333222 223344
Q ss_pred EEECCCC-CEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCcc------CcceEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 001160 547 MAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1134)
Q Consensus 547 ~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 619 (1134)
+.+.... ...++... .+.-.+++...+..+..+.... ...++-+..+|.+.+.+++.+|+.|+++|..+
T Consensus 445 vd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred EeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 5443332 12222111 2223334444444444333221 12466788899999999999999999999999
Q ss_pred CeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
++++.....| ...++++++.|+|.+|++++.|+.+++|.+...
T Consensus 521 ~~~l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 521 GKILHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cccchheeec--cceecceeecCCCceEEeecCCceeehhhccch
Confidence 9999888766 447899999999999999999999999998665
No 182
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.75 E-value=7e-17 Score=153.91 Aligned_cols=308 Identities=13% Similarity=0.152 Sum_probs=198.2
Q ss_pred ceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeE
Q 001160 533 SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQI 612 (1134)
Q Consensus 533 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 612 (1134)
+...+..+.+.++++.|-.+++ |+++. ..|.+.+|++.+......++++....|+.+..-|+ ..+.+-+.|+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~----~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L 79 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGL----SVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLL 79 (323)
T ss_pred CeeEeccccchheehhhccchh-hhccc----ccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceE
Confidence 4455667888999999988877 55654 37889999999999999999766668999988886 578888899999
Q ss_pred EEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCC-cEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCc
Q 001160 613 KFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN-GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPL 691 (1134)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1134)
.+|++..+..+..-. -.++++-|.+-. +...+... ..-.++-+...+ .....+..
T Consensus 80 ~lw~ia~s~~i~i~S-----i~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~D~g~---------------- 135 (323)
T KOG0322|consen 80 ILWTIAYSAFISIHS-----IVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQDGGD---------------- 135 (323)
T ss_pred EEEEccCcceEEEee-----eeccccccccce--eccCCCcchhheecCCcccch-hhhhccCc----------------
Confidence 999998755443322 123444443311 11111110 111111111100 00000000
Q ss_pred cccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCccc
Q 001160 692 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA 771 (1134)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~ 771 (1134)
.-.+.+-+-+ ..+.
T Consensus 136 ----------------------------------------------------~tqv~i~dd~--------------~~~K 149 (323)
T KOG0322|consen 136 ----------------------------------------------------TTQVQIADDS--------------ERSK 149 (323)
T ss_pred ----------------------------------------------------cceeEccCch--------------hccc
Confidence 0001111100 0112
Q ss_pred ccceEEEEEe-cCCc--ceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEe
Q 001160 772 ASKVVRLIYT-NSGL--SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 848 (1134)
Q Consensus 772 ~~~v~~~~~s-~~g~--~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~ 848 (1134)
.+.+.+..+. .++. .+++|..+|.+.+||+.......+-. ..| .+.... ..| ..++.++.|
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~-------~~~------kv~~~~--ash-~qpvlsldy 213 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP-------QSS------KVESPN--ASH-KQPVLSLDY 213 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccc-------ccc------ccccch--hhc-cCcceeeee
Confidence 2334443322 1222 35677789999999987642211100 111 111112 227 899999999
Q ss_pred ccCCCEEEEEe-CCeEEEEECCC--CeE--EEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCc
Q 001160 849 SKNDSYVMSAS-GGKVSLFNMMT--FKV--MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH 923 (1134)
Q Consensus 849 s~dg~~la~~s-dg~i~vwd~~~--~~~--~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h 923 (1134)
.+.-..=++|+ +..+..|+++. +.+ .....-....|..+.+-| |++++|++++||.||||..++...+..++.|
T Consensus 214 as~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyH 292 (323)
T KOG0322|consen 214 ASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYH 292 (323)
T ss_pred chhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhh
Confidence 87655556666 77888888763 222 222223355688999999 9999999999999999999999999999999
Q ss_pred ccceEEEEEecCCCEEEEEcCCCcEEEEeC
Q 001160 924 QNRITGLAFSPTLNALVSSGADAQLCMWSI 953 (1134)
Q Consensus 924 ~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~ 953 (1134)
++.|.+++|+||...+|+++.|++|.+|++
T Consensus 293 sagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 293 SAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999986
No 183
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.75 E-value=1.2e-15 Score=169.59 Aligned_cols=252 Identities=12% Similarity=0.076 Sum_probs=165.1
Q ss_pred CCceEEEEeccCCCEEEEEe--CCeEEEEECC-CCeE--EEEecCCCCceEEEEEcCCCCcEEEEEe-CCCcEEEEEcCC
Q 001160 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMM-TFKV--MTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVRV 913 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~-~~~~--~~~~~~~~~~i~~l~~s~~~~~~lasg~-~dg~i~iwd~~~ 913 (1134)
......++++||+++|++++ ++.|.+|++. +++. ..... .......++|+| ++++|++++ .++.|.+|++.+
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECC
Confidence 34566789999999988775 6889999997 3432 22222 233567899999 788777765 488999999974
Q ss_pred -c---eEEEEecCcccceEEEEEecCCCEEEEE-cCCCcEEEEeCCCcccccc---eeeecCCCCCCCCcCceEEEECCC
Q 001160 914 -D---EVKTKLKGHQNRITGLAFSPTLNALVSS-GADAQLCMWSIDKWEKLKS---RFIQAPAGRQSPLVGETKVQFHND 985 (1134)
Q Consensus 914 -~---~~~~~l~~h~~~i~~l~~s~d~~~l~s~-~~D~~i~iWd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~fspd 985 (1134)
+ +.+..+.+ .....+++++||+++++++ ..++.|.+||+.+...+.. .......+ ..+..++|+||
T Consensus 112 ~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-----~~p~~~~~~pd 185 (330)
T PRK11028 112 DGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-----AGPRHMVFHPN 185 (330)
T ss_pred CCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-----CCCceEEECCC
Confidence 3 22333332 2345678899999988554 4679999999987432211 11111222 34678999999
Q ss_pred CcEEEEE--ECCeEEEEeCC--Ccce---eccCCC---CCCCCCeEEEEEccCCCEEEEEec-CCcEEEEeCCCcceeee
Q 001160 986 QTHLLVV--HESQISVYDSK--LECS---RSWSPK---DALPAPISSAIYSCDGLLVYAGFC-DGAIGVFDAETLRFRCR 1054 (1134)
Q Consensus 986 g~~l~~~--~d~~v~vwd~~--~~~~---~~~~~~---~~h~~~v~~v~~s~dg~~l~~~~~-dg~I~vwd~~~~~~~~~ 1054 (1134)
|++++++ .+++|.+|+++ ...+ ..+... ..+......+.|+|||++|+++.. ++.|.+|+++......+
T Consensus 186 g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~ 265 (330)
T PRK11028 186 QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLS 265 (330)
T ss_pred CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEE
Confidence 9999885 37899999994 2222 111111 011223346899999999998864 78999999965432222
Q ss_pred cCCcccccccccCCCCccEEEeecCCCCCEEEEEeC-CCcEEEEecCCCccccC
Q 001160 1055 IGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMS-DGAVHVVEPSDAELKWG 1107 (1134)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~-Dg~v~vW~~~~~~~~~~ 1107 (1134)
+..+. +.+ ..+..+.++| ||++|++++. +++|.+|++......+.
T Consensus 266 ~~~~~--~~~-----~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~~g~l~ 311 (330)
T PRK11028 266 FEGHQ--PTE-----TQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGETGLLT 311 (330)
T ss_pred EeEEE--ecc-----ccCCceEECC-CCCEEEEEEccCCcEEEEEEcCCCCcEE
Confidence 22111 111 3455788999 7788887665 89999999865443343
No 184
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.1e-15 Score=143.75 Aligned_cols=281 Identities=18% Similarity=0.261 Sum_probs=191.8
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe
Q 001160 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
.|.+-++||.++ +|++|..+|.|.+..+..-..-.. ..+...++ ....+|.++|+.++|. ..+|++|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa-------~~~gk~~i--v~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSA-------EPPGKLKI--VPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhcccc-------CCCCCcce--eeccccCCCeeeeeee--hhheeecc
Confidence 466778999998 788899999999999864321110 00000111 1136899999999998 45676764
Q ss_pred CCCeEEEEEcCCCCc---cceeeEE--eccc-----CCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCC
Q 001160 428 SKHIVHLYTYNPTGE---LRQHLEI--DAHV-----GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~~---~~~~~~~--~~h~-----~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~ 497 (1134)
||.|+-|....... .+...+. ..|. -.|+++...|... -+++++.|+.++-||+++|+..++++||+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 59999998765432 1110011 1122 2588999998877 45666679999999999999999999999
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC----------CCcEEEEEECCCCCEEEEEeeCCCCCC
Q 001160 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP----------GNWCTMMAYSADGTRLFSCGTSKEGES 567 (1134)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1134)
+.|.++.-.... ..+++|+.||++|+||.++.+....+... +.+|-+++. +..++++++ ..
T Consensus 157 DYvH~vv~R~~~--~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-----Gp 227 (325)
T KOG0649|consen 157 DYVHSVVGRNAN--GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-----GP 227 (325)
T ss_pred ceeeeeeecccC--cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-----CC
Confidence 999999864333 57999999999999999998887755332 235555554 556888875 45
Q ss_pred cEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCC-CE
Q 001160 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG-SL 646 (1134)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~ 646 (1134)
.+.+|.++..++...|.-.. .+..+.|.. +.+++++..+.|.-|.+. |.....++...+ ..++..|+... ++
T Consensus 228 ~lslwhLrsse~t~vfpipa--~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIPA--RVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSPIKF 300 (325)
T ss_pred ceeEEeccCCCceEEEeccc--ceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCceEE
Confidence 69999999988888776543 566677764 478888888899999874 444444433222 33444444332 34
Q ss_pred EEEEeCCCcEEEE
Q 001160 647 LAVTTSDNGIKIL 659 (1134)
Q Consensus 647 l~~~~~dg~i~iw 659 (1134)
+-.++..+.+.|+
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 4455556666665
No 185
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.5e-16 Score=157.73 Aligned_cols=293 Identities=11% Similarity=0.131 Sum_probs=211.8
Q ss_pred ecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCE
Q 001160 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 343 l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
+.|.+-|+++.||.+++ +||+|+.|..+++|++...-.... ..+++. .-..|...|.|++|....++
T Consensus 53 ~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~-----------~KPI~~-~~~~H~SNIF~L~F~~~N~~ 119 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKT-----------PKPIGV-MEHPHRSNIFSLEFDLENRF 119 (609)
T ss_pred hhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcC-----------CCCcee-ccCccccceEEEEEccCCee
Confidence 34888999999999997 899999999999999874322111 001111 02346689999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEeccc---CCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe-ee--EEecCC
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHV---GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQ--YTFEGH 496 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~---~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~-~~--~~~~~h 496 (1134)
+.+|+.+++|...|+.+.+.+. .+ .|. +.|+.+..+|... .+++.+.++.|.+||.+... .+ ..+...
T Consensus 120 ~~SG~~~~~VI~HDiEt~qsi~---V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~ 193 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIETKQSIY---VA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANS 193 (609)
T ss_pred EecCCCcceeEeeecccceeee---ee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence 9999999999999999977654 22 344 4899999999977 89999999999999987654 21 222234
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeE-------ecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcE
Q 001160 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-------YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1134)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1134)
......+.|+|... .+|++.+..+-+-+||.+....... +......-.++.|+|+|+.+++.-. ...-
T Consensus 194 ~~~F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~P 268 (609)
T KOG4227|consen 194 GKNFYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKCP 268 (609)
T ss_pred CccceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCCC
Confidence 45677888998765 6889999999999999987654331 1111223357789999999987643 2334
Q ss_pred EEEeCCCCee-EEEecCccC-----cceEEEEEeCCCCEEEEEeCCCeEEEEECCCCe----------------------
Q 001160 570 VEWNESEGAI-KRTYSGFRK-----RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN---------------------- 621 (1134)
Q Consensus 570 ~~wd~~~~~~-~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------------------- 621 (1134)
.+||+.+..+ +..+..... ..+.+++|..|. .+++|+.+-.|++|.+....
T Consensus 269 ~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~ 347 (609)
T KOG4227|consen 269 LYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIE 347 (609)
T ss_pred EEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheec
Confidence 5678776443 333331111 146678887665 48999999999999875311
Q ss_pred -eEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001160 622 -MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 622 -~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
.+..+.+| ..-++.+.|+|...+|++.+-.+.+++|...
T Consensus 348 ~~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 348 KELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ceeEEEecc--cccccceeecCCcceEeccchhhheeccccc
Confidence 23344555 3467899999999999999999999999753
No 186
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=6e-16 Score=149.60 Aligned_cols=290 Identities=15% Similarity=0.269 Sum_probs=208.3
Q ss_pred EEEEecCCCCeeEEEEe--cCCCeEEEEEeC----CCcEEEEEc--cCccccccccceeeccccccccccccccccCCcC
Q 001160 339 VVRTLNQGSNVMSMDFH--PQQQTILLVGTN----VGDISLWEV--GSRERLAHKPFKVWDISAASMPLQNALLNDAAIS 410 (1134)
Q Consensus 339 ~~~~l~h~~~V~~v~~s--pdg~~llasg~~----dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 410 (1134)
.+......-.+.++.|| |+.+..||.|+. .+.|.|-.+ .+++.+...+ ..|..+
T Consensus 37 eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~------------------fd~~YP 98 (364)
T KOG0290|consen 37 EIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN------------------FDHPYP 98 (364)
T ss_pred eEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC------------------CCCCCC
Confidence 35555556688999998 566667888874 345555544 3444443322 258999
Q ss_pred eEEEEEcCCCC-----EEEEEeCCCeEEEEEcCCCC-ccceeeEE-----ecccCCeeEEEEecCCCcEEEEEEcCCCcE
Q 001160 411 VNRCVWGPDGL-----MLGVAFSKHIVHLYTYNPTG-ELRQHLEI-----DAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1134)
Q Consensus 411 V~~i~~spdg~-----~las~~~dg~i~iwd~~~~~-~~~~~~~~-----~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i 479 (1134)
++.+.|.|+.. +||+++ ..+++|.+...+ .+.....+ ..+..++++..|+.-..+ +|.+++-|-+.
T Consensus 99 ~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTC 175 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTC 175 (364)
T ss_pred ccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeE
Confidence 99999999863 666653 359999987422 11111111 246779999999886655 89999999999
Q ss_pred EEEECCCCee---eEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCcee-EecCC--CCcEEEEEECCCC
Q 001160 480 KVWDVVAGRK---QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAP--GNWCTMMAYSADG 553 (1134)
Q Consensus 480 ~iwd~~~~~~---~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~--~~~v~~~~~s~~~ 553 (1134)
.|||+++|.. ...+-.|...|..++|... .-+.+++.+.||.+|++|++..+.-. .+... ..+...++|++..
T Consensus 176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~-s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD 254 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLKG-SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD 254 (364)
T ss_pred EEEEEeeccccceeeEEEecCcceeEEEeccC-ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC
Confidence 9999999743 3456789999999999873 34799999999999999999766533 23322 4578889998855
Q ss_pred -CEEEEEeeCCCCCCcEEEEeCCC-CeeEEEecCccCcceEEEEEeCCC-CEEEEEeCCCeEEEEECCCCee------EE
Q 001160 554 -TRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNM------LT 624 (1134)
Q Consensus 554 -~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~------~~ 624 (1134)
+++++... ....|.+.|++. ..++..+++|.. .|+.++|.|.. ..++++|+|..+.+||+...-. +.
T Consensus 255 pnymATf~~---dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 255 PNYMATFAM---DSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred chHHhhhhc---CCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 55666554 245699999986 567889999988 99999999976 6788899999999999976332 11
Q ss_pred EEeCCCCCCCcceEEEcc-CCCEEEEEeCCCcEEE
Q 001160 625 TVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 658 (1134)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~i 658 (1134)
.+. ....|+.+.|++ .+.+++.+... .+.+
T Consensus 331 ay~---a~~EVNqi~Ws~~~~Dwiai~~~k-klei 361 (364)
T KOG0290|consen 331 AYT---AGGEVNQIQWSSSQPDWIAICFGK-KLEI 361 (364)
T ss_pred hhh---ccceeeeeeecccCCCEEEEEecC-eeeE
Confidence 222 234789999996 66788877654 4443
No 187
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.74 E-value=9.1e-18 Score=183.81 Aligned_cols=278 Identities=16% Similarity=0.277 Sum_probs=215.7
Q ss_pred ecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCE
Q 001160 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 343 l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
+.|.+.|+|+.|...|. ++++|+.|..|+||...++.++.+ ..||.+.|+.++.+.+..+
T Consensus 187 lgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~~n~~ 246 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSSNNTM 246 (1113)
T ss_pred Hhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccchhhhh
Confidence 34888999999999997 678999999999999999999876 7899999999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE---ec-CCCC
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT---FE-GHEA 498 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~---~~-~h~~ 498 (1134)
+|+++.|..|++|.+.++..+. .+.+|.+.|++++|+|- .+.+.||++++||.+-...++. +. ....
T Consensus 247 iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~ 317 (1113)
T KOG0644|consen 247 IAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKD 317 (1113)
T ss_pred hhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCccccc
Confidence 9999999999999999998776 77899999999999985 3678899999999771111111 11 1224
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCC-EEEEEeeCCCCCCcEEEEeCCCC
Q 001160 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEWNESEG 577 (1134)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~ 577 (1134)
.+.++.|. .++..+++++.|+.-..|.+..... +...+.-+.++.+-. +.+++- .+..+.+|++.+|
T Consensus 318 ~~~s~~~~--~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwnl~~g 385 (1113)
T KOG0644|consen 318 LVDSILFE--NNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWNLYTG 385 (1113)
T ss_pred ceeeeecc--ccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeee----eeeEeeeeecccc
Confidence 45555553 3457899999999988886542111 111122222222322 222222 3667899999999
Q ss_pred eeEEEecCccCcceEEEEEeCCCCEEE-EEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcE
Q 001160 578 AIKRTYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1134)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i 656 (1134)
...+.+.+|.+ .+..+.++|-+..++ +++.||...|||+-.|.+++..... ...+...+||+||..++...+-|.+
T Consensus 386 ~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g--h~kl~d~kFSqdgts~~lsd~hgql 462 (1113)
T KOG0644|consen 386 QLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG--HGKLVDGKFSQDGTSIALSDDHGQL 462 (1113)
T ss_pred hhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc--cceeeccccCCCCceEecCCCCCce
Confidence 99999999988 899999999886655 5899999999999999888877633 2367788999999999998888999
Q ss_pred EEEECCCc
Q 001160 657 KILANSDG 664 (1134)
Q Consensus 657 ~iw~~~~~ 664 (1134)
.|.....+
T Consensus 463 ~i~g~gqs 470 (1113)
T KOG0644|consen 463 YILGTGQS 470 (1113)
T ss_pred EEeccCCC
Confidence 99876544
No 188
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1e-16 Score=167.58 Aligned_cols=241 Identities=13% Similarity=0.172 Sum_probs=165.3
Q ss_pred ccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEE
Q 001160 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iw 482 (1134)
.+.||.+.|+|++|+.||.+||+|+.|-.+.|||.-..+.+..+. .||...|.++.|-|....-.+++|..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~--TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS--TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee--cccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 478999999999999999999999999999999998766655433 489999999999997555589999999999999
Q ss_pred ECCC----------CeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc-ee---------EecCCCC
Q 001160 483 DVVA----------GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RV---------DYDAPGN 542 (1134)
Q Consensus 483 d~~~----------~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~---------~~~~~~~ 542 (1134)
|+.. ....+.+..|...|..++..|.+. ..+.+++.||+|+-+|++.... .. .+...--
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9984 234455667899999999877654 7999999999999999986321 11 1111122
Q ss_pred cEEEEEECCCCCE-EEEEeeCCCCCCcEEEEeCCCCeeEEEecCccC------cceEEEE-EeCCCCEEEEEeCCCeEEE
Q 001160 543 WCTMMAYSADGTR-LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK------RSLGVVQ-FDTTRNRFLAAGDEFQIKF 614 (1134)
Q Consensus 543 ~v~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~~-~~~~~~~l~~~~~dg~i~i 614 (1134)
...++.++|...+ |++|+. +...++||.+... ..+..... ....|+. |+|.+- ...+|.+
T Consensus 202 elk~ltisp~rp~~laVGgs----dpfarLYD~Rr~l--ks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~gn~-- 269 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGS----DPFARLYDRRRVL--KSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQGNL-- 269 (758)
T ss_pred eeeeeeecCCCCceEEecCC----Cchhhhhhhhhhc--cCCCCCccccCCCCcccchhheecCccc----cCccccc--
Confidence 5678999997665 555553 7789999964211 11111110 0111221 222210 0111110
Q ss_pred EECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhc
Q 001160 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672 (1134)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 672 (1134)
.... ..++-++|+|+|.-|++.-....|+++|+..++.....+.
T Consensus 270 --------~~~~------~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~~ 313 (758)
T KOG1310|consen 270 --------DRYI------TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYFL 313 (758)
T ss_pred --------ccce------eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeecC
Confidence 0000 1246789999998877777777999999988755544443
No 189
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=1.1e-16 Score=154.45 Aligned_cols=217 Identities=19% Similarity=0.338 Sum_probs=165.7
Q ss_pred ccceEEEEec--CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeE
Q 001160 335 LTKTVVRTLN--QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1134)
Q Consensus 335 ~~~~~~~~l~--h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 412 (1134)
.+.+++..|. +-+.|.|+.|.|++..+++. .|..|.+|+++.+..+.. .+ ....-.+|....+
T Consensus 110 ~tlE~v~~Ldteavg~i~cvew~Pns~klasm--~dn~i~l~~l~ess~~va-ev------------~ss~s~e~~~~ft 174 (370)
T KOG1007|consen 110 STLECVASLDTEAVGKINCVEWEPNSDKLASM--DDNNIVLWSLDESSKIVA-EV------------LSSESAEMRHSFT 174 (370)
T ss_pred chhhHhhcCCHHHhCceeeEEEcCCCCeeEEe--ccCceEEEEcccCcchhe-ee------------cccccccccceec
Confidence 3456666776 45699999999999875543 389999999998876321 11 0011224677889
Q ss_pred EEEEcC--CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC-Cee
Q 001160 413 RCVWGP--DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRK 489 (1134)
Q Consensus 413 ~i~~sp--dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~-~~~ 489 (1134)
+-+||| ||+.+++. .|+++..||+++..+...+ -.+|...|..+.|+|+-+. +|+||++||.|+|||.+. ..+
T Consensus 175 sg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~p 250 (370)
T KOG1007|consen 175 SGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFP 250 (370)
T ss_pred ccccCCCCccceEEEe-CCCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCcc
Confidence 999999 88888887 6788999999987665432 2478899999999999877 899999999999999875 567
Q ss_pred eEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC-----------------------------CceeEecCC
Q 001160 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-----------------------------GSRVDYDAP 540 (1134)
Q Consensus 490 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~-----------------------------~~~~~~~~~ 540 (1134)
+.++.+|...|+++.|+|..| +++++++.|..|.+|....- +.+..+..|
T Consensus 251 v~el~~HsHWvW~VRfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh 329 (370)
T KOG1007|consen 251 VQELPGHSHWVWAVRFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH 329 (370)
T ss_pred ccccCCCceEEEEEEecCccc-eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc
Confidence 889999999999999999887 89999999999999965321 112245667
Q ss_pred CCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeC
Q 001160 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1134)
Q Consensus 541 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1134)
...|++++||.-..++++.-. -||++.|=.+
T Consensus 330 EDSVY~~aWSsadPWiFASLS---YDGRviIs~V 360 (370)
T KOG1007|consen 330 EDSVYALAWSSADPWIFASLS---YDGRVIISSV 360 (370)
T ss_pred ccceEEEeeccCCCeeEEEec---cCceEEeecC
Confidence 788999999988777664331 2666665443
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=1.6e-15 Score=168.46 Aligned_cols=275 Identities=12% Similarity=0.144 Sum_probs=173.8
Q ss_pred ccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEee-ccCeeEEeecccccCCCCCCcccccC
Q 001160 739 RVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALA-SNAVHKLWKWQRTERNPSGKATANVA 817 (1134)
Q Consensus 739 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~v~vw~~~~~~~~~~~~~~~~~~ 817 (1134)
++...++.|.+|++.+.......+.+. .......++++|++++|++++ .++.|.+|++..
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~-------------- 66 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD-------------- 66 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECC--------------
Confidence 334567999999996422112222222 224567889999999887765 468888887641
Q ss_pred cccccCCCCCcc-ccccCCCCCCCCceEEEEeccCCCEEEEEe--CCeEEEEECCC-C---eEEEEecCCCCceEEEEEc
Q 001160 818 PQLWQPPSGTLM-TNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMT-F---KVMTMFMSPPPAATFLAFH 890 (1134)
Q Consensus 818 ~~~w~~~~~~~~-~~~~~~~~h~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~-~---~~~~~~~~~~~~i~~l~~s 890 (1134)
++... ..... . ......++++|+|+++++++ ++.|.+|++++ + +.+..+. +.....+++++
T Consensus 67 -------~g~l~~~~~~~---~-~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~ 134 (330)
T PRK11028 67 -------DGALTFAAESP---L-PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANID 134 (330)
T ss_pred -------CCceEEeeeec---C-CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeC
Confidence 11110 00001 1 33456799999999999887 79999999974 2 2233333 23456788999
Q ss_pred CCCCcEEEE-EeCCCcEEEEEcCCceEEE-------EecCcccceEEEEEecCCCEEEEEcC-CCcEEEEeCCC--cccc
Q 001160 891 PQDNNIIAI-GMEDSSVQIYNVRVDEVKT-------KLKGHQNRITGLAFSPTLNALVSSGA-DAQLCMWSIDK--WEKL 959 (1134)
Q Consensus 891 ~~~~~~las-g~~dg~i~iwd~~~~~~~~-------~l~~h~~~i~~l~~s~d~~~l~s~~~-D~~i~iWd~~~--~~~~ 959 (1134)
| +++++++ ...++.|.+||+.+...+. .... ......++|+|||++++++.. +++|.+|+++. ++..
T Consensus 135 p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~ 212 (330)
T PRK11028 135 P-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIE 212 (330)
T ss_pred C-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEE
Confidence 9 7777754 4566999999997633221 1111 234578999999999988775 89999999974 2211
Q ss_pred cceeeecCCCCCCCCcCceEEEECCCCcEEEEE--ECCeEEEEeC--CCcceeccCCCCCCCCCeEEEEEccCCCEEEEE
Q 001160 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAG 1035 (1134)
Q Consensus 960 ~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~d~~v~vwd~--~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~ 1035 (1134)
....+...............++|+|||++++++ .++.|.+|++ ++........... ......++|+|||++|+++
T Consensus 213 ~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va 291 (330)
T PRK11028 213 CVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAA 291 (330)
T ss_pred EEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEE
Confidence 111111111110001223468999999999996 3678999998 2222211111000 1245578999999999987
Q ss_pred ec-CCcEEEEeCC
Q 001160 1036 FC-DGAIGVFDAE 1047 (1134)
Q Consensus 1036 ~~-dg~I~vwd~~ 1047 (1134)
+. +++|.+|+++
T Consensus 292 ~~~~~~v~v~~~~ 304 (330)
T PRK11028 292 GQKSHHISVYEID 304 (330)
T ss_pred EccCCcEEEEEEc
Confidence 76 8999999875
No 191
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.73 E-value=7.1e-17 Score=153.89 Aligned_cols=289 Identities=15% Similarity=0.191 Sum_probs=199.4
Q ss_pred EEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccc-cCCcCeEEEEE
Q 001160 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN-DAAISVNRCVW 416 (1134)
Q Consensus 339 ~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~i~~ 416 (1134)
+...|. |.+.|+++.|-.+++ |.+|...|.|++|++++...+.. +. -|...|+.+.-
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~lq~ 64 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITNLQS 64 (323)
T ss_pred CeeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeeceee
Confidence 334444 888999999999996 56899999999999998765532 22 36778999998
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCC-----CcE--EEEEEcCCC-cEEEEECCCCe
Q 001160 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPN-----KQL--CIVTCGDDK-MIKVWDVVAGR 488 (1134)
Q Consensus 417 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~-----~~~--~l~sg~~d~-~i~iwd~~~~~ 488 (1134)
-|+ ..|.+-+.|+.+.+|++..+.-+. -|.-.++++.|++-. +.. .++.-++.. .+++-|.....
T Consensus 65 ~p~-d~l~tqgRd~~L~lw~ia~s~~i~------i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t 137 (323)
T KOG0322|consen 65 IPN-DSLDTQGRDPLLILWTIAYSAFIS------IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT 137 (323)
T ss_pred cCC-cchhhcCCCceEEEEEccCcceEE------EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccc
Confidence 888 567788899999999998754332 355566777776532 100 111111100 01222221111
Q ss_pred eeEEe----cCCCCCeEEEEeeccCC-ccEEEEEecCCeEEEEEccCCCcee----------EecCCCCcEEEEEECCCC
Q 001160 489 KQYTF----EGHEAPVYSVCPHHKES-IQFIFSTAIDGKIKAWLYDYLGSRV----------DYDAPGNWCTMMAYSADG 553 (1134)
Q Consensus 489 ~~~~~----~~h~~~v~~i~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~----------~~~~~~~~v~~~~~s~~~ 553 (1134)
.+... .+..+.+.+..+..... .-++++|..+|.+.+||+.++.... ....|..+|.++.+.+.-
T Consensus 138 qv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~ 217 (323)
T KOG0322|consen 138 QVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC 217 (323)
T ss_pred eeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh
Confidence 12111 12345666666432221 1356778899999999999874433 334567789999998766
Q ss_pred CEEEEEeeCCCCCCcEEEEeCCC--Cee-EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC
Q 001160 554 TRLFSCGTSKEGESHLVEWNESE--GAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630 (1134)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 630 (1134)
..=++++. +..+..|++.. +.+ +.....-....+..+.+-||++.++++|.|+.||+|+.++.+++..+..|.
T Consensus 218 ~rGisgga----~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs 293 (323)
T KOG0322|consen 218 DRGISGGA----DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS 293 (323)
T ss_pred cCCcCCCc----cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhh
Confidence 55555554 44577887763 222 222222222367789999999999999999999999999999999999886
Q ss_pred CCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 631 ~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
..|++++|+|+..++|+++.|+.|.+|++
T Consensus 294 --agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 294 --AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred --cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 48999999999999999999999999986
No 192
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=1.1e-14 Score=146.35 Aligned_cols=242 Identities=11% Similarity=0.113 Sum_probs=186.9
Q ss_pred CcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001160 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1134)
Q Consensus 408 ~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~ 487 (1134)
...+..+.|+.|...|..|+.|| -++|..+...... ........|.-+-|+..= +.+++...-+.+++.+.+.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSSL--vaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSSL--VAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccce--eEEEecCCCceEEEEEcccC
Confidence 34577888999999999999999 6788876643321 111122345555665431 13334433456999999988
Q ss_pred eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecC---CCCcEEEEEECCCCCEEEEEeeCCC
Q 001160 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA---PGNWCTMMAYSADGTRLFSCGTSKE 564 (1134)
Q Consensus 488 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1134)
..++.+. ....|.++.++. ++|+++-.+. |.+||+.+.+.+..+.. +...+.++++++.+.+++.-+. .
T Consensus 79 ~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s--~ 150 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS--T 150 (391)
T ss_pred ceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC--C
Confidence 8888775 566799998854 5677666555 99999998887775543 3445777777777789987643 2
Q ss_pred CCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCe-EEEEECCCCeeEEEEeCCCCCCCcceEEEccC
Q 001160 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ-IKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1134)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 643 (1134)
..|.|++||..+-+.+..+..|.+ .+.+++|+++|..++++++.|+ ||++.+.+|+.+..+........|.+++|+|+
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence 367799999999999999999887 9999999999999999998887 79999999999999976555567899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCc
Q 001160 644 GSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+++|++.++.++|.+|.+...
T Consensus 230 s~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCeEEEecCCCeEEEEEeccc
Confidence 999999999999999998754
No 193
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.6e-16 Score=155.92 Aligned_cols=275 Identities=12% Similarity=0.138 Sum_probs=196.4
Q ss_pred eEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC--CCCEEEEEeCCCeEEEEEc
Q 001160 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLGVAFSKHIVHLYTY 437 (1134)
Q Consensus 360 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp--dg~~las~~~dg~i~iwd~ 437 (1134)
..+|++-..|.|++||..+++.+.. ++++...++.++|.. ....+.+|+.||+|++||+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~ 101 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDI 101 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEe
Confidence 3677888899999999999887764 678888999999987 4678999999999999999
Q ss_pred CCCCccceeeEEeccc-CCeeEEEEecCCCcEEEEEEc----CCCcEEEEECCCCee-eEE-ecCCCCCeEEEEeeccCC
Q 001160 438 NPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCG----DDKMIKVWDVVAGRK-QYT-FEGHEAPVYSVCPHHKES 510 (1134)
Q Consensus 438 ~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~sg~----~d~~i~iwd~~~~~~-~~~-~~~h~~~v~~i~~~~~~~ 510 (1134)
+........ .+.+|. .+..+++..-.+. .+++|. .|-.|.+||++..+. +.. ...|.+.|+++.|+|+.+
T Consensus 102 Rs~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p 178 (376)
T KOG1188|consen 102 RSQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP 178 (376)
T ss_pred ecchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC
Confidence 987665433 344555 4666777665565 677765 467899999998766 554 356999999999999876
Q ss_pred ccEEEEEecCCeEEEEEccCCCc---eeEecCCCCcEEEEEECCCC-CEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCc
Q 001160 511 IQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1134)
Q Consensus 511 ~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1134)
++|++||.||-|.++|+..... +.....+...|.++.|..++ +.+.+.+ ......+|+++.+.....+...
T Consensus 179 -nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT----H~Etf~~~ele~~~~~~~~~~~ 253 (376)
T KOG1188|consen 179 -NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT----HMETFAIYELEDGSEETWLENP 253 (376)
T ss_pred -CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE----ccCceeEEEccCCChhhcccCc
Confidence 8999999999999999976533 23344566789999999888 3454444 3667999999988765554332
Q ss_pred cC------------cceEEEEEeCCCCEEEEEeC-CCeEEEEECC---CC---eeEEEEeCCCCCCCcceEEEccCCCEE
Q 001160 587 RK------------RSLGVVQFDTTRNRFLAAGD-EFQIKFWDMD---NM---NMLTTVDADGGLPASPRLRFNKEGSLL 647 (1134)
Q Consensus 587 ~~------------~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~---~~---~~~~~~~~~~~~~~v~~~~~s~d~~~l 647 (1134)
.- ..|.+. ...++..++.++. -+...++-+. ++ +.+..+.+ ++..-|.++.|...+.++
T Consensus 254 ~~~~~d~r~~~~~dY~I~~~-~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l 331 (376)
T KOG1188|consen 254 DVSADDLRKEDNCDYVINEH-SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVL 331 (376)
T ss_pred cchhhhHHhhhhhhheeecc-cCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhccccee
Confidence 10 012111 1223345555443 5555555433 22 23333433 234467888998889999
Q ss_pred EEEeCCCcEEEEECCC
Q 001160 648 AVTTSDNGIKILANSD 663 (1134)
Q Consensus 648 ~~~~~dg~i~iw~~~~ 663 (1134)
.+|+.||.+.+|....
T Consensus 332 ~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 332 YTGGEDGLLQAWKVED 347 (376)
T ss_pred eccCCCceEEEEecCC
Confidence 9999999999998643
No 194
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=4.9e-17 Score=171.68 Aligned_cols=267 Identities=13% Similarity=0.201 Sum_probs=192.5
Q ss_pred Eec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCC
Q 001160 342 TLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1134)
Q Consensus 342 ~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg 420 (1134)
++. |.+.|+.++|.|... .|++++.||++.+|+++....-... ...+...+.+|.++|.|+++++++
T Consensus 289 tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~-----------~~epi~tfraH~gPVl~v~v~~n~ 356 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEK-----------DVEPILTFRAHEGPVLCVVVPSNG 356 (577)
T ss_pred eeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCcccc-----------ceeeeEEEecccCceEEEEecCCc
Confidence 444 889999999999998 6889999999999999432111110 111222367899999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCC-------ccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe
Q 001160 421 LMLGVAFSKHIVHLYTYNPTG-------ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1134)
Q Consensus 421 ~~las~~~dg~i~iwd~~~~~-------~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 493 (1134)
..+.+|+.||+|+.|++.... .......+.||.+.|+.+++++... .|++++.||++++|+.....+ .+|
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f 433 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTF 433 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-ccc
Confidence 999999999999999664221 1122336779999999999999888 799999999999999776655 444
Q ss_pred cCC--CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC-------CCcEEEEEECCCCCEEEEEeeCCC
Q 001160 494 EGH--EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------GNWCTMMAYSADGTRLFSCGTSKE 564 (1134)
Q Consensus 494 ~~h--~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1134)
... .+.-.++.+..... ...++...-+.--+.++........+... ...+..+.+.|.+...+++..
T Consensus 434 ~~~~e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he--- 509 (577)
T KOG0642|consen 434 GEPKEHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE--- 509 (577)
T ss_pred CCccccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc---
Confidence 332 22233444432211 12222222222233333333333333221 135678888999988888874
Q ss_pred CCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC
Q 001160 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1134)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1134)
++.|+++|..+++++.....|.. .++++++.|+|.+|++++.|+.+++|.+....++.....+
T Consensus 510 -d~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 510 -DRSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred -CCceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 78899999999999999999988 8999999999999999999999999999877666555443
No 195
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=7.7e-16 Score=148.64 Aligned_cols=255 Identities=15% Similarity=0.221 Sum_probs=185.3
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCC-------CcEEEEEccCccccccccceeeccccccccccccccc-cCCcCeEEEE
Q 001160 344 NQGSNVMSMDFHPQQQTILLVGTNV-------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN-DAAISVNRCV 415 (1134)
Q Consensus 344 ~h~~~V~~v~~spdg~~llasg~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~i~ 415 (1134)
.|.++|+.++-+|-.+++|+++..+ ..+.||.+....... +...|+ ....+. .+-+.|.|+.
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S--~~~tlE--------~v~~Ldteavg~i~cve 130 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS--NSSTLE--------CVASLDTEAVGKINCVE 130 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc--ccchhh--------HhhcCCHHHhCceeeEE
Confidence 3678999999999999899988653 257788876432210 000010 001122 4556899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCccceee---EEecccCCeeEEEEec--CCCcEEEEEEcCCCcEEEEECCCCeee
Q 001160 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL---EIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1134)
Q Consensus 416 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~---~~~~h~~~v~~l~~s~--d~~~~~l~sg~~d~~i~iwd~~~~~~~ 490 (1134)
|.|++..+|+-. |..|.+|+++.+..+.... .-.+|....++-+|+| ||. .+++.+ |+++..||+++.++.
T Consensus 131 w~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt~-d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 131 WEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATTS-DSTLQFWDLRTMKKN 206 (370)
T ss_pred EcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEeC-CCcEEEEEccchhhh
Confidence 999999999875 7889999999876532111 1113566788899998 566 556554 899999999998877
Q ss_pred EEec-CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc-eeEecCCCCcEEEEEECCCCCEEE-EEeeCCCCCC
Q 001160 491 YTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLF-SCGTSKEGES 567 (1134)
Q Consensus 491 ~~~~-~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~~~~~~ 567 (1134)
..+. .|...|..+.|+|+.. .+|++|+.||.|++||.+..+. +..+..|.++|.++.|+|.-..|+ +++. |.
T Consensus 207 ~sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S----Ds 281 (370)
T KOG1007|consen 207 NSIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS----DS 281 (370)
T ss_pred cchhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC----Cc
Confidence 6664 5888999999999865 6899999999999999987665 558889999999999999766555 5553 66
Q ss_pred cEEEEeCCCC-----------------------------eeEEEecCccCcceEEEEEeCCCCEE-EEEeCCCeEEEEEC
Q 001160 568 HLVEWNESEG-----------------------------AIKRTYSGFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDM 617 (1134)
Q Consensus 568 ~i~~wd~~~~-----------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~ 617 (1134)
.|.+|....- ..+.++..|.+ .|.+++|+.-..++ ++-+.||.+.|=.+
T Consensus 282 ~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED-SVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 282 AVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED-SVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred eeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc-ceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 7888754210 12345667777 89999999876664 55789999988665
Q ss_pred C
Q 001160 618 D 618 (1134)
Q Consensus 618 ~ 618 (1134)
.
T Consensus 361 ~ 361 (370)
T KOG1007|consen 361 P 361 (370)
T ss_pred C
Confidence 4
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.71 E-value=1.4e-15 Score=170.74 Aligned_cols=271 Identities=16% Similarity=0.213 Sum_probs=199.4
Q ss_pred ccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccC
Q 001160 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA 407 (1134)
Q Consensus 328 ~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 407 (1134)
.+|..... ..+-..+....+|+|++|+|....++|.|.++|+|.+||+..+....... .......|
T Consensus 225 ~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-------------ls~~~~sh 290 (555)
T KOG1587|consen 225 LVWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-------------LSALEVSH 290 (555)
T ss_pred EEEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc-------------cccccccC
Confidence 34444443 67777778888999999999999999999999999999999876531100 11124569
Q ss_pred CcCeEEEEEcCCCC--EEEEEeCCCeEEEEEcCCCCccceeeEEe---------cccCCeeEEEEecCCCcEEEEEEcCC
Q 001160 408 AISVNRCVWGPDGL--MLGVAFSKHIVHLYTYNPTGELRQHLEID---------AHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1134)
Q Consensus 408 ~~~V~~i~~spdg~--~las~~~dg~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~l~~s~d~~~~~l~sg~~d 476 (1134)
..+|+.+.|-.+-. -+++++.||.|..|+++.-........+. .-...+++++|.+.... .++.|+++
T Consensus 291 ~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~ 369 (555)
T KOG1587|consen 291 SEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEE 369 (555)
T ss_pred CcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCC
Confidence 99999999987544 59999999999999886533211111111 12246899999987766 78999999
Q ss_pred CcEEEEE---CCCCe-----eeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcc-CCCceeEecCCCCcEEEE
Q 001160 477 KMIKVWD---VVAGR-----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPGNWCTMM 547 (1134)
Q Consensus 477 ~~i~iwd---~~~~~-----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~v~~~ 547 (1134)
|.|.--+ ...+. .+..+..|.++|.++.++|-.. ..+++++ |.++++|.-. .......+..+...++++
T Consensus 370 G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~v 447 (555)
T KOG1587|consen 370 GKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDV 447 (555)
T ss_pred cEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeee
Confidence 9988733 22222 1235566899999999988764 3444444 9999999887 556666777777789999
Q ss_pred EECCCCCEEEEEeeCCCCCCcEEEEeCCC--CeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 001160 548 AYSADGTRLFSCGTSKEGESHLVEWNESE--GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1134)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 619 (1134)
+|||-...++++. +.+|.|.+||+.. ..++.+.... ....+.+.|++.|+.+++|...|.+.+|++..
T Consensus 448 aWSptrpavF~~~---d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 448 AWSPTRPAVFATV---DGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEcCcCceEEEEE---cCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9999887777665 4689999999974 3445554444 32677888999999999999999999999864
No 197
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1e-16 Score=165.82 Aligned_cols=296 Identities=17% Similarity=0.254 Sum_probs=232.0
Q ss_pred EEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC-
Q 001160 341 RTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP- 418 (1134)
Q Consensus 341 ~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp- 418 (1134)
..|. |.+-|+.|.|...|. +|++|+.|..|.+||+..+..... ...+|...|.-..|-|
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~ 196 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPF 196 (559)
T ss_pred hcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCC
Confidence 3444 899999999999998 899999999999999998876543 2568999999889988
Q ss_pred -CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe---c
Q 001160 419 -DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF---E 494 (1134)
Q Consensus 419 -dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~---~ 494 (1134)
+.+.+++++.||.+++=.+...+.+.....+..|.++|.-++.-|+... -|.+++.|+.+.-.|+.++.+...+ .
T Consensus 197 s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~ 275 (559)
T KOG1334|consen 197 SGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCRE 275 (559)
T ss_pred CCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeec
Confidence 5678999999999999887766655555567789999999999999877 7999999999999999887654332 2
Q ss_pred CCCC---CeEEEEeeccCCccEEEEEecCCeEEEEEccCCCce------eEec------CCCCcEEEEEECCCCCEEEEE
Q 001160 495 GHEA---PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR------VDYD------APGNWCTMMAYSADGTRLFSC 559 (1134)
Q Consensus 495 ~h~~---~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~------~~~~------~~~~~v~~~~~s~~~~~l~~~ 559 (1134)
.+.. ....++.+|... ..+++++.|..+++||.+..... ..+. .....|++++|+.++.-+++.
T Consensus 276 ~~~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS 354 (559)
T KOG1334|consen 276 ADEKERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS 354 (559)
T ss_pred cCCccceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee
Confidence 2333 467788888754 58999999999999998754332 1111 223378999999777666665
Q ss_pred eeCCCCCCcEEEEeCCC--C----------eeEE-EecCccCc-ceEEEE-EeCCCCEEEEEeCCCeEEEEECCCCeeEE
Q 001160 560 GTSKEGESHLVEWNESE--G----------AIKR-TYSGFRKR-SLGVVQ-FDTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (1134)
Q Consensus 560 ~~~~~~~~~i~~wd~~~--~----------~~~~-~~~~~~~~-~v~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1134)
.. |-.|+++.... | ..+. .+++|... .|..+- |.|...++++|++-|.|.||+-.+++.+.
T Consensus 355 Yn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~ 430 (559)
T KOG1334|consen 355 YN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR 430 (559)
T ss_pred ec----ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHH
Confidence 43 55688885432 3 2233 37888653 355554 57888999999999999999999999999
Q ss_pred EEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCC
Q 001160 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~ 663 (1134)
.+.+..+ -|+|+.-+|--..||+.+-|..|+||...+
T Consensus 431 ~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 431 FMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred Hhhcccc--eEeccCCCCCCchhhccCCccceeeecCCc
Confidence 9887766 689999999999999999999999998743
No 198
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.5e-15 Score=150.66 Aligned_cols=300 Identities=14% Similarity=0.174 Sum_probs=217.6
Q ss_pred eEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC------CCeeEEEecCccCcceEEEEEeCCCCEEEEEeC
Q 001160 535 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES------EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608 (1134)
Q Consensus 535 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 608 (1134)
..+..|.+.|.++.|+.++++|++++. |..+++|++. +.+++.....|+...|.|++|...+..+++|+.
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGD----D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~ 125 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGD----DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGER 125 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCC----cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCC
Confidence 345678889999999999999999985 7789999975 346666666666568999999999999999999
Q ss_pred CCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCC
Q 001160 609 EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISS 688 (1134)
Q Consensus 609 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1134)
+++|...|+++.+.+..+........|+.+..+|-.+.+++.+.++.|.+||....+.....+-
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~---------------- 189 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL---------------- 189 (609)
T ss_pred cceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee----------------
Confidence 9999999999999998887766667899999999999999999999999999876521110000
Q ss_pred CCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCC
Q 001160 689 KPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPD 768 (1134)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~ 768 (1134)
..
T Consensus 190 ---------------------------------------------------------------~A--------------- 191 (609)
T KOG4227|consen 190 ---------------------------------------------------------------PA--------------- 191 (609)
T ss_pred ---------------------------------------------------------------ec---------------
Confidence 00
Q ss_pred cccccceEEEEEecCCcc-eEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEE
Q 001160 769 SIAASKVVRLIYTNSGLS-LLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 847 (1134)
Q Consensus 769 ~~~~~~v~~~~~s~~g~~-l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~ 847 (1134)
.......++.|.|.... |++.+..+-+-+||....+... +.... ...++. . ...-..+.
T Consensus 192 -N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~------------~~~~~----~~~L~~--~-~~~~M~~~ 251 (609)
T KOG4227|consen 192 -NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPV------------YQRSM----FKGLPQ--E-NTEWMGSL 251 (609)
T ss_pred -CCCccceeeeecCCCceeEEeccccCCCCceeeccccchH------------Hhhhc----cccCcc--c-chhhhhee
Confidence 01123456777776554 4555666888889875432211 00000 000110 0 22345688
Q ss_pred eccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCC-------CceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC------
Q 001160 848 LSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-------PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV------ 913 (1134)
Q Consensus 848 ~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-------~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~------ 913 (1134)
|+|+|..+.+.- ...-.+||+-+..+..--..|. ..+.+++|.. ..-+++|+++=.|++|.+..
T Consensus 252 ~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~--D~~v~tGSD~~~i~~WklP~~~ds~G 329 (609)
T KOG4227|consen 252 WSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFID--DYTVATGSDHWGIHIWKLPRANDSYG 329 (609)
T ss_pred eCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeec--ceeeeccCcccceEEEecCCCccccC
Confidence 999999988876 4456778887755432222233 2467888975 35599999999999998752
Q ss_pred -----------------ceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCC
Q 001160 914 -----------------DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID 954 (1134)
Q Consensus 914 -----------------~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~ 954 (1134)
.+.+.+|+||.+-+..+.|+|...+|++.|-.+.++||.--
T Consensus 330 ~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 330 FTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 12345789999999999999999999999999999999643
No 199
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=3.2e-15 Score=168.42 Aligned_cols=302 Identities=17% Similarity=0.297 Sum_probs=208.2
Q ss_pred CeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCC---CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC
Q 001160 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH---EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1134)
Q Consensus 455 ~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h---~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 531 (1134)
+-..+.|+|-.. .+++++..-.|++||.+.++.+..|..+ ...|+.+.+....|..++++|+.||.||+|+--..
T Consensus 1066 ~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 456678888877 6888887789999999999998877654 35789999888888899999999999999953211
Q ss_pred CceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCe
Q 001160 532 GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ 611 (1134)
Q Consensus 532 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 611 (1134)
. | ....|+++.. .-++. ..+..+.. .-+.|.....+|+++|+-..
T Consensus 1144 ~----------------~--~~~eLVTaw~------------~Ls~~----~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1144 K----------------W--KKPELVTAWS------------SLSDQ----LPGARGTG-LVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred c----------------c--CCceeEEeec------------ccccc----CccCCCCC-eeeehhhhCCeEEecCCeeE
Confidence 0 0 1223444321 11111 11111111 23567777778888888899
Q ss_pred EEEEECCCCeeEEEEeCCCCCCCcceEEEcc-CCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCC
Q 001160 612 IKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 690 (1134)
Q Consensus 612 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1134)
|+|||+........+..... ..|+++.-+- .|+.+++|..||.|++||.+.....
T Consensus 1189 IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d----------------------- 1244 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSS-TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD----------------------- 1244 (1387)
T ss_pred EEEEecccceeEeecccCCC-ccceeecccccCCceEEEeecCCceEEeecccCCcc-----------------------
Confidence 99999999888887765533 3455554433 5799999999999999997644110
Q ss_pred ccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcc
Q 001160 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI 770 (1134)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~ 770 (1134)
..|..|. .
T Consensus 1245 ------------------------------------------------------s~v~~~R------------------~ 1252 (1387)
T KOG1517|consen 1245 ------------------------------------------------------SLVCVYR------------------E 1252 (1387)
T ss_pred ------------------------------------------------------ccceeec------------------c
Confidence 0111111 1
Q ss_pred cccc--eEEEEEecCCcc-eEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCC--CCceEE
Q 001160 771 AASK--VVRLIYTNSGLS-LLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT--EESAAC 845 (1134)
Q Consensus 771 ~~~~--v~~~~~s~~g~~-l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~--~~~i~~ 845 (1134)
|... |..+.+.+.|-. |++++.+|.|++||+..... . .. +....|. .+..++
T Consensus 1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e------------------~~----~~iv~~~~yGs~lTa 1309 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-E------------------TF----LTIVAHWEYGSALTA 1309 (1387)
T ss_pred cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-c------------------cc----ceeeeccccCcccee
Confidence 3333 778888886655 99999999999999865210 0 00 0000010 335899
Q ss_pred EEeccCCCEEEEEeCCeEEEEECCCCeEEEEecC-------CCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc
Q 001160 846 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS-------PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 914 (1134)
Q Consensus 846 ~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~-------~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~ 914 (1134)
+..+++...+|+|+.+.|+||++.. +.+..++. ..+.+.|++|+| -.-++|+|+.|..|.||.....
T Consensus 1310 l~VH~hapiiAsGs~q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1310 LTVHEHAPIIASGSAQLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred eeeccCCCeeeecCcceEEEEecCh-hhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCc
Confidence 9999999999999999999999974 33333332 235689999999 7888999999999999987654
No 200
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.69 E-value=4.4e-15 Score=166.73 Aligned_cols=250 Identities=15% Similarity=0.134 Sum_probs=185.9
Q ss_pred CCcCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCc--cceee-EEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEE
Q 001160 407 AAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGE--LRQHL-EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1134)
Q Consensus 407 h~~~V~~i~~sp-dg~~las~~~dg~i~iwd~~~~~~--~~~~~-~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iw 482 (1134)
-...|.|+.|+| +..++|.|..+|.|.+||+..+.. ..... ....|..+++.+.|..+-...-+++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 567899999999 677888889999999999998765 22111 22368899999999776543358999999999999
Q ss_pred ECCCCee------eEEec------CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcc---CCC-----ceeEecCCCC
Q 001160 483 DVVAGRK------QYTFE------GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD---YLG-----SRVDYDAPGN 542 (1134)
Q Consensus 483 d~~~~~~------~~~~~------~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~---~~~-----~~~~~~~~~~ 542 (1134)
+++.-.. ..... .-...+++++|.+... ..++.|+.+|.|.--+-. ... ....+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCC-ceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8764322 11111 1234688899987765 689999999998873322 222 1225566788
Q ss_pred cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC-CCeeEEEecCccCcceEEEEEeCCCC-EEEEEeCCCeEEEEECCCC
Q 001160 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM 620 (1134)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 620 (1134)
.|+++.++|-+..++..+ +|-+++||... ...++..+..+.+ .+.+++|||... .|+++..||.|.+||+...
T Consensus 400 ~v~~v~~nPF~~k~fls~----gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSV----GDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ceEeeecCCCccceeeee----ccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 999999999887766554 27789999988 6677777777766 699999999875 4566778999999999754
Q ss_pred e--eEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 621 N--MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 621 ~--~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
. ++.+.... ....+.+.|++.|+.|++|...|++.+|++...
T Consensus 475 ~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 475 DEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 4 33333333 345678888999999999999999999999643
No 201
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=4.1e-16 Score=159.65 Aligned_cols=199 Identities=22% Similarity=0.242 Sum_probs=154.2
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceee
Q 001160 885 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFI 964 (1134)
Q Consensus 885 ~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~ 964 (1134)
.+++|++ +|..|++|+.||++|||+..+...+.....|.+.|.+|.|||||++|++.+.| ..+||++.++..+...
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~-- 223 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK-- 223 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc--
Confidence 7899999 89999999999999999998888888888899999999999999999999999 8999999998543221
Q ss_pred ecCCCCCCCCcCceEEEECCCC---cE-EEEE--ECCeEEEEeC---CCcceeccCCCCCCCCCeEEEEEccCCCEEEEE
Q 001160 965 QAPAGRQSPLVGETKVQFHNDQ---TH-LLVV--HESQISVYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLVYAG 1035 (1134)
Q Consensus 965 ~~~~~~~~~~~~v~~~~fspdg---~~-l~~~--~d~~v~vwd~---~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~ 1035 (1134)
.+.+. ......+.|+.|+ .+ +++. ..+.|+.||+ .+.....+...-.-...|++++.|+||+++|.|
T Consensus 224 -t~~~k---~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 224 -TPFSK---DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred -CCccc---chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 11111 1346778898888 33 3332 3467777777 221111111111114689999999999999999
Q ss_pred ecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCC
Q 001160 1036 FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1036 ~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~ 1101 (1134)
+.||.|.|++..+-+.+.-... .|...++.+.|+| |.+++++.+.|.+..|-.+.-
T Consensus 300 T~dGsVai~~~~~lq~~~~vk~---------aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVKE---------AHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ccCCcEEEEEeceeeeeEeehh---------hheeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 9999999999998776654431 3556888999999 789999999999999988865
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=1.2e-14 Score=163.90 Aligned_cols=201 Identities=18% Similarity=0.197 Sum_probs=150.3
Q ss_pred EeccC-CCEEEEEeCCeEEEEECCCCeEEEEecC-CCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc---eEEEEec
Q 001160 847 ALSKN-DSYVMSASGGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---EVKTKLK 921 (1134)
Q Consensus 847 ~~s~d-g~~la~~sdg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~---~~~~~l~ 921 (1134)
.|-.. |.++++|+-..|+|||...-.+.+.+.. ....|+++.-+-..|+++|+|..||.|++||.+.. ..+...+
T Consensus 1172 dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred ehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence 34343 3444444457799999988777777654 34457887766547899999999999999998754 3567788
Q ss_pred Ccccc--eEEEEEecCCC-EEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEE
Q 001160 922 GHQNR--ITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQIS 998 (1134)
Q Consensus 922 ~h~~~--i~~l~~s~d~~-~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~ 998 (1134)
.|.+. |..+.+-+.|- .|++|+.||.|++||+.........-+.... .. ....+++..+++...+|+|+.+.|+
T Consensus 1252 ~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~-~y--Gs~lTal~VH~hapiiAsGs~q~ik 1328 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW-EY--GSALTALTVHEHAPIIASGSAQLIK 1328 (1387)
T ss_pred ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc-cc--CccceeeeeccCCCeeeecCcceEE
Confidence 99988 99999988765 4999999999999999874322211111111 00 0247899999999999998779999
Q ss_pred EEeCCCcceeccCCCCC----CCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcc
Q 001160 999 VYDSKLECSRSWSPKDA----LPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1050 (1134)
Q Consensus 999 vwd~~~~~~~~~~~~~~----h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~ 1050 (1134)
||++.++.+..+....+ ..+.+.|++|+|---+||+|+.|.+|.||...++.
T Consensus 1329 Iy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1329 IYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred EEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 99997777766544322 24578999999999999999999999999887654
No 203
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.68 E-value=1.8e-16 Score=173.78 Aligned_cols=289 Identities=17% Similarity=0.263 Sum_probs=221.5
Q ss_pred eeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEE
Q 001160 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1134)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 657 (1134)
+.++.+.+|.. .|.|+.|...|.++++|++|..++||..+++.++....+|.+ .|+.++.+.+..++++++.|..|+
T Consensus 181 k~ikrLlgH~n-aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 181 KNIKRLLGHRN-AVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--DITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHhhhh-heeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--ccchhccchhhhhhhhcccCceEE
Confidence 44566778877 899999999999999999999999999999999999988755 799999999999999999999999
Q ss_pred EEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccc
Q 001160 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVK 737 (1134)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1134)
+|.+.++ ..+..+.+|++.+....+. |-
T Consensus 258 vWrl~~~-~pvsvLrghtgavtaiafs-------------------------P~-------------------------- 285 (1113)
T KOG0644|consen 258 VWRLPDG-APVSVLRGHTGAVTAIAFS-------------------------PR-------------------------- 285 (1113)
T ss_pred EEecCCC-chHHHHhccccceeeeccC-------------------------cc--------------------------
Confidence 9999999 8999999998776543222 21
Q ss_pred cccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccC
Q 001160 738 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVA 817 (1134)
Q Consensus 738 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~ 817 (1134)
..++.||++++||..-.......+...+ ....-+.++.|..++..+.+++.|+.-..|.+..
T Consensus 286 -~sss~dgt~~~wd~r~~~~~y~prp~~~---~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~-------------- 347 (1113)
T KOG0644|consen 286 -ASSSDDGTCRIWDARLEPRIYVPRPLKF---TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQ-------------- 347 (1113)
T ss_pred -ccCCCCCceEeccccccccccCCCCCCc---ccccceeeeeccccccccccccCCcccccchhhH--------------
Confidence 1345679999999872111111111111 1235567788888899899999998877775431
Q ss_pred cccccCCCCCccccccCCCCCCCCceEEEEeccCCC-EEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCc
Q 001160 818 PQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS-YVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN 895 (1134)
Q Consensus 818 ~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~-~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 895 (1134)
..| + ...+.-+.++.|-. +.+++- +-.+.+|++.+|.+.+.+.+|...+..+.++|.+.+
T Consensus 348 -l~~----------------~-~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 348 -LAW----------------R-SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPR 409 (1113)
T ss_pred -hhh----------------h-ccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcH
Confidence 011 1 22223333333333 444444 778999999999999999999999999999998888
Q ss_pred EEEEEeCCCcEEEEEcCCceEEEEe-cCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCccc
Q 001160 896 IIAIGMEDSSVQIYNVRVDEVKTKL-KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 958 (1134)
Q Consensus 896 ~lasg~~dg~i~iwd~~~~~~~~~l-~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~ 958 (1134)
+..+++.||...|||+..|..++.. .+| +.+..-+||+||+.++....-|.+.|.....++.
T Consensus 410 i~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 410 IAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred hhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 8889999999999999998777664 454 5567789999999999888889999987766553
No 204
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=6.2e-15 Score=142.67 Aligned_cols=261 Identities=13% Similarity=0.241 Sum_probs=186.2
Q ss_pred ccccceEEE--EecCCCCeeEEEEecCCC----eEEEEEeCCCcEEEEEccCccccccccceeecccccccccccccccc
Q 001160 333 DDLTKTVVR--TLNQGSNVMSMDFHPQQQ----TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1134)
Q Consensus 333 ~~~~~~~~~--~l~h~~~V~~v~~spdg~----~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 406 (1134)
+...++.+. ++.|.-+++.+-|.|+.+ .+||++ +..+++|.+...+.... +...+....-..
T Consensus 81 d~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~----------~~~~L~~~kns~ 148 (364)
T KOG0290|consen 81 DEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVE----------LQSVLNNNKNSE 148 (364)
T ss_pred ccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCcee----------hhhhhccCcccc
Confidence 344444433 356999999999999873 467765 45899999874321110 000111111345
Q ss_pred CCcCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001160 407 AAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1134)
Q Consensus 407 h~~~V~~i~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~ 485 (1134)
+..++++..|+. |-++|.+++-|.+..|||++++..-.....+-+|...|..++|...+.+ ++|+.|.||+|+++|++
T Consensus 149 ~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 149 FCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLR 227 (364)
T ss_pred cCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEec
Confidence 778999999998 7889999999999999999997543334467799999999999998777 89999999999999998
Q ss_pred CCe---eeEEecCCCCCeEEEEeeccCCccEEEEEecC-CeEEEEEccCCCc-eeEecCCCCcEEEEEECCCC-CEEEEE
Q 001160 486 AGR---KQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-GKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADG-TRLFSC 559 (1134)
Q Consensus 486 ~~~---~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~~~ 559 (1134)
.-+ .+++-.....+...++|+.... .++++-..| ..|.+.|++.... ...+..|.+.|+.++|.|.. ..++++
T Consensus 228 ~leHSTIIYE~p~~~~pLlRLswnkqDp-nymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hicta 306 (364)
T KOG0290|consen 228 SLEHSTIIYEDPSPSTPLLRLSWNKQDP-NYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTA 306 (364)
T ss_pred ccccceEEecCCCCCCcceeeccCcCCc-hHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeec
Confidence 644 3333333356778888886644 677776655 5689999987654 55889999999999999965 567777
Q ss_pred eeCCCCCCcEEEEeCCCCe------eEEEecCccCcceEEEEEeCCC-CEEEEEeCCCeEEE
Q 001160 560 GTSKEGESHLVEWNESEGA------IKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKF 614 (1134)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i 614 (1134)
|. |.++.+||+...- ++..+. .++.|+.+.|++.. ..++.+. ++.+.+
T Consensus 307 GD----D~qaliWDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 307 GD----DCQALIWDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred CC----cceEEEEecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 64 8889999997532 233344 22379999999644 5565554 344444
No 205
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=2.3e-14 Score=143.98 Aligned_cols=240 Identities=14% Similarity=0.208 Sum_probs=182.0
Q ss_pred CCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCC--cEEEEEcCCceEE
Q 001160 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS--SVQIYNVRVDEVK 917 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg--~i~iwd~~~~~~~ 917 (1134)
...+..+.|..|...|..|+....++|+.+..............|..+-||. .++|..+.+. .+++++...+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 4567778899999999999966678888877555333333444577778876 4777766554 5999999888877
Q ss_pred EEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-E--EC
Q 001160 918 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-V--HE 994 (1134)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~--~d 994 (1134)
..+. ...+|.++.+.. ++|+.+=.+. |+|||+++-+.+.......++ ..++.++.+++.+.+||. + ..
T Consensus 82 Ce~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n-----~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPN-----PKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCC-----ccceEeeccCCCCceEEecCCCCC
Confidence 7766 556799999854 4566665554 999999997754432221111 134666677777789999 3 46
Q ss_pred CeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCc-EEEEeCCCcceeeecCCcccccccccCCCCcc
Q 001160 995 SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA-IGVFDAETLRFRCRIGPSAYIPTYAVSNTAHP 1072 (1134)
Q Consensus 995 ~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~-I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1134)
|.|.+||+ +.+....+ ..|.+++.+++|++||.+|||+|..|+ ||||.+.+|+.+.+++...+ ....
T Consensus 153 GdV~l~d~~nl~~v~~I---~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--------~~~I 221 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTI---NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--------PVSI 221 (391)
T ss_pred ceEEEEEcccceeeeEE---EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--------eeEE
Confidence 89999999 66665555 467999999999999999999999998 89999999999999986532 2445
Q ss_pred EEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1073 LVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1073 ~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
.+++|+| |+.+|++.|..++|+++.+++..
T Consensus 222 ySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 222 YSLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 5899999 78999999999999999997644
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1e-15 Score=156.82 Aligned_cols=198 Identities=14% Similarity=0.182 Sum_probs=157.3
Q ss_pred EEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecC
Q 001160 844 ACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG 922 (1134)
Q Consensus 844 ~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~ 922 (1134)
.+++|++||..+++|+ ||++|||+..+...+.....|...|.++.||| ||++|++-+.| ..+||++.+|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999998888888889999999999999 99999999999 999999999977766653
Q ss_pred c--ccceEEEEEecCC-----CEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE-EC
Q 001160 923 H--QNRITGLAFSPTL-----NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HE 994 (1134)
Q Consensus 923 h--~~~i~~l~~s~d~-----~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d 994 (1134)
. ......+.|+.|+ ...+....-+.|+.|++...+.-......... .....+++++.|+||+++|.+ .+
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~---~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI---KRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh---hccCcceeEEEcCCCcEEEEeccC
Confidence 2 2346678898887 33444455567888887765532111111111 111368999999999999994 79
Q ss_pred CeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001160 995 SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 995 ~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~ 1048 (1134)
|.|.|++. +.+++... .+.|..-|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus 303 GsVai~~~~~lq~~~~v--k~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYV--KEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEeceeeeeEee--hhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999999 55554433 467899999999999999999999999999988764
No 207
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=4.5e-14 Score=162.12 Aligned_cols=255 Identities=13% Similarity=0.091 Sum_probs=183.6
Q ss_pred cccCCcCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCC----CccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCc
Q 001160 404 LNDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPT----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg-~~las~~~dg~i~iwd~~~~----~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~ 478 (1134)
+..|...|..++.+++. .++++|+.||+|++||...- ...+...++..-..++.++.+.+.+. .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 56788889999988755 99999999999999998642 22333334444567899999999999 7888999999
Q ss_pred EEEEECCCC--e-----eeEEecC-CCCCeEEE-EeeccCCccEEEEEecCCeEEEEEccCCCceeE--ecCCCCcEEEE
Q 001160 479 IKVWDVVAG--R-----KQYTFEG-HEAPVYSV-CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--YDAPGNWCTMM 547 (1134)
Q Consensus 479 i~iwd~~~~--~-----~~~~~~~-h~~~v~~i-~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~~~~~~v~~~ 547 (1134)
|++.++... + +.+.... ..+.+.++ ++........++.+..-+.|..||++....... .....+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999998762 1 1111122 22344444 333322223788888999999999988766554 44567799999
Q ss_pred EECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCC---CEEEEEe--CCCeEEEEECCCCee
Q 001160 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR---NRFLAAG--DEFQIKFWDMDNMNM 622 (1134)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~--~dg~i~iwd~~~~~~ 622 (1134)
+.+|-+.+++.|+. .|.+.+||++-+.++..+......+++.+..+|-. ...++++ ..+.|.+|++.+|..
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 99999999999975 78899999999999988776555577777766643 3555544 578899999999877
Q ss_pred EEEEeCCCCC-----------------CCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 623 LTTVDADGGL-----------------PASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 623 ~~~~~~~~~~-----------------~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
...+-..... .......+...+..+.+|+.|..||.||....
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 6666433110 01122333334568899999999999998766
No 208
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.64 E-value=4.2e-13 Score=147.63 Aligned_cols=331 Identities=14% Similarity=0.141 Sum_probs=206.5
Q ss_pred EEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEE
Q 001160 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1134)
Q Consensus 468 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~ 547 (1134)
+++++-..++.|.+.|..+.+.+.++......-..+.+++ ||.++++++.||.|.++|+.+.+....+.. +....++
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~--Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i 83 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP--DGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGI 83 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT---SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC--CCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceE
Confidence 4567778899999999999999999986544434456655 558999999999999999999987777765 4456889
Q ss_pred EECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCcc------CcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCC
Q 001160 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------KRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNM 620 (1134)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 620 (1134)
++|+||++++++.. ..+.+.++|.++.++++.+.... ...+..+..+|....++..- +.+.|.+-|....
T Consensus 84 ~~s~DG~~~~v~n~---~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 84 AVSPDGKYVYVANY---EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EE--TTTEEEEEEE---ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred EEcCCCCEEEEEec---CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 99999999998764 46789999999999998876542 22567787888888666554 5588888898776
Q ss_pred eeEEEEeCCCCCCCcceEEEccCCCEEEEE-eCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCC
Q 001160 621 NMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 699 (1134)
Q Consensus 621 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1134)
+.+..-..... .......|+|++++++++ ..++.|-++|..+++ ....+..
T Consensus 161 ~~~~~~~i~~g-~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k-~v~~i~~-------------------------- 212 (369)
T PF02239_consen 161 KNLKVTTIKVG-RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK-LVALIDT-------------------------- 212 (369)
T ss_dssp SCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE-EEEEEE---------------------------
T ss_pred cccceeeeccc-ccccccccCcccceeeecccccceeEEEeeccce-EEEEeec--------------------------
Confidence 54432221111 245789999999987665 446788899987662 1111100
Q ss_pred cccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEE
Q 001160 700 SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 779 (1134)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 779 (1134)
.. ..|..++..+
T Consensus 213 -----------------------------------------------------g~--------------~p~~~~~~~~- 224 (369)
T PF02239_consen 213 -----------------------------------------------------GK--------------KPHPGPGANF- 224 (369)
T ss_dssp -----------------------------------------------------SS--------------SBEETTEEEE-
T ss_pred -----------------------------------------------------cc--------------cccccccccc-
Confidence 00 0011111111
Q ss_pred EecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEE-EEE
Q 001160 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV-MSA 858 (1134)
Q Consensus 780 ~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~l-a~~ 858 (1134)
..|. .+.++.. +..+... ...
T Consensus 225 php~--------------------------------------------------------~g~vw~~--~~~~~~~~~~i 246 (369)
T PF02239_consen 225 PHPG--------------------------------------------------------FGPVWAT--SGLGYFAIPLI 246 (369)
T ss_dssp EETT--------------------------------------------------------TEEEEEE--EBSSSSEEEEE
T ss_pred cCCC--------------------------------------------------------cceEEee--ccccceecccc
Confidence 1111 1111111 1122222 222
Q ss_pred eCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEE----eCCCcEEEEEcCCceEEEEecCcc-cceEEEEEe
Q 001160 859 SGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG----MEDSSVQIYNVRVDEVKTKLKGHQ-NRITGLAFS 933 (1134)
Q Consensus 859 sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg----~~dg~i~iwd~~~~~~~~~l~~h~-~~i~~l~~s 933 (1134)
+.+.+.+||..+++.++++....+. ..+.-+| +++++.+. ...+.|.++|..+.+.+..+.... ..+..+.|+
T Consensus 247 g~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~ 324 (369)
T PF02239_consen 247 GTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFN 324 (369)
T ss_dssp E--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-
T ss_pred cCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEEC
Confidence 3445668899999999999876666 8888899 88888877 455899999999998888775332 358999999
Q ss_pred cCCCEEEEEcC--CCcEEEEeCCCccccc
Q 001160 934 PTLNALVSSGA--DAQLCMWSIDKWEKLK 960 (1134)
Q Consensus 934 ~d~~~l~s~~~--D~~i~iWd~~~~~~~~ 960 (1134)
+||+.+..+.. ++.|.++|..+.+..+
T Consensus 325 ~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 325 PDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred CCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 99996655443 3379999999988544
No 209
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.64 E-value=1.7e-11 Score=127.02 Aligned_cols=142 Identities=13% Similarity=0.067 Sum_probs=107.1
Q ss_pred cceEEEEEecCCcceEEeeccC-eeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccC
Q 001160 773 SKVVRLIYTNSGLSLLALASNA-VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 851 (1134)
Q Consensus 773 ~~v~~~~~s~~g~~l~~~~~dg-~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d 851 (1134)
..|.-..+..++.-++.+..|| .+-||+.. +++.... .. . -+.|.++..++|
T Consensus 360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~----------------------~~e~kr~-e~---~-lg~I~av~vs~d 412 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD----------------------GGEVKRI-EK---D-LGNIEAVKVSPD 412 (668)
T ss_pred CceEEEEEccCCcceEEeccCCceEEEEecC----------------------CceEEEe-eC---C-ccceEEEEEcCC
Confidence 3455555666666788888887 77777653 3322211 12 2 678999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCC----cEEEEEcCCceEEEEecCcccc
Q 001160 852 DSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS----SVQIYNVRVDEVKTKLKGHQNR 926 (1134)
Q Consensus 852 g~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg----~i~iwd~~~~~~~~~l~~h~~~ 926 (1134)
|++++++. ...|.+.|+++++....-+...+-|+.++||| +++++|.+--+| .|+++|+.+++....-. ..+.
T Consensus 413 GK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~ 490 (668)
T COG4946 413 GKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAY 490 (668)
T ss_pred CcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-Cccc
Confidence 99999998 68999999999988777666778899999999 999999987665 79999999988665433 2333
Q ss_pred eEEEEEecCCCEEEEEc
Q 001160 927 ITGLAFSPTLNALVSSG 943 (1134)
Q Consensus 927 i~~l~~s~d~~~l~s~~ 943 (1134)
=.+-+|.||+++|.--+
T Consensus 491 DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 491 DFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ccCcccCCCCcEEEEEe
Confidence 45678999999887654
No 210
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=2.8e-14 Score=163.24 Aligned_cols=235 Identities=11% Similarity=0.098 Sum_probs=163.0
Q ss_pred CCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCccc
Q 001160 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELR 444 (1134)
Q Consensus 368 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~d---g~i~iwd~~~~~~~~ 444 (1134)
+..|.+||....... .+..|...+.+.+|||||+.||.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998755421 145678889999999999999988653 479999998875321
Q ss_pred eeeEEecccCCeeEEEEecCCCcEEEEEE-cCCCcEEE--EECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEe-cC
Q 001160 445 QHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDKMIKV--WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-ID 520 (1134)
Q Consensus 445 ~~~~~~~h~~~v~~l~~s~d~~~~~l~sg-~~d~~i~i--wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~-~d 520 (1134)
...+.+| ...++|+|||+ .|+.+ +.++.+.| ||+.++. ...+..+...+....|+|++ ..|+.++ .+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG--~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDG--QSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCC--CEEEEEECCC
Confidence 2223333 44689999999 55554 46776555 5666655 45566677778889998764 6665544 67
Q ss_pred CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCC
Q 001160 521 GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1134)
Q Consensus 521 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 600 (1134)
+...+|+++..........+.. .+..|+|||++++..+. ..+.+||+.+++........ ....+.|+|+|
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG 383 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF---LDESPSISPNG 383 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC---CCCCceECCCC
Confidence 8889998765433222222322 46789999999988753 23777999988765333222 23457899999
Q ss_pred CEEEEEeCCCeEEEEEC--CCCeeEEEEeCCCCCCCcceEEEccC
Q 001160 601 NRFLAAGDEFQIKFWDM--DNMNMLTTVDADGGLPASPRLRFNKE 643 (1134)
Q Consensus 601 ~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~s~d 643 (1134)
++++.++.++.+.+|.+ .++.....+..+.+ .+...+|+|-
T Consensus 384 ~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 384 IMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred CEEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 99999998888888875 35777777765533 5778899874
No 211
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=2.6e-15 Score=155.54 Aligned_cols=324 Identities=17% Similarity=0.257 Sum_probs=223.6
Q ss_pred EEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEec-CCCCCeEEEEeeccCCccEEEEEecCCeEEEE
Q 001160 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526 (1134)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~w 526 (1134)
.|..|.+.|..|.|+..|. .+++|+.|..|.+||+..++....+. ||...|....|.|..+...+++++.||.+++=
T Consensus 137 kL~~H~GcVntV~FN~~Gd--~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGD--VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred cccCCCCccceeeecccCc--eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 6789999999999999999 89999999999999999998877664 69889998899998877899999999998864
Q ss_pred EccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCC-CEEEE
Q 001160 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NRFLA 605 (1134)
Q Consensus 527 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~ 605 (1134)
.+.. ++.. .+ ...+..|.+ .|.-++.-|+. ..|.+
T Consensus 215 ~i~~---------------------------t~~~----e~------------t~rl~~h~g-~vhklav~p~sp~~f~S 250 (559)
T KOG1334|consen 215 EILE---------------------------TGYV----EN------------TKRLAPHEG-PVHKLAVEPDSPKPFLS 250 (559)
T ss_pred eecc---------------------------ccce----ec------------ceecccccC-ccceeeecCCCCCcccc
Confidence 3221 1110 00 112222333 67777777766 45788
Q ss_pred EeCCCeEEEEECCCCeeEEEEeCCCC-C---CCcceEEEccCC-CEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccC
Q 001160 606 AGDEFQIKFWDMDNMNMLTTVDADGG-L---PASPRLRFNKEG-SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 680 (1134)
Q Consensus 606 ~~~dg~i~iwd~~~~~~~~~~~~~~~-~---~~v~~~~~s~d~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 680 (1134)
+++|+.+.-+|++...+...+..... . ...+.++..|.. ..+++++.|..+++||...-.+. ...+ ..-.+
T Consensus 251 ~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e--~~n~--~~~~f 326 (559)
T KOG1334|consen 251 CGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE--ENNG--VLDKF 326 (559)
T ss_pred cccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc--cccc--hhhhc
Confidence 99999999999987765544432211 1 245788888854 48999999999999997543110 0000 00000
Q ss_pred CCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccc
Q 001160 681 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 760 (1134)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~ 760 (1134)
+|.+
T Consensus 327 ~p~h---------------------------------------------------------------------------- 330 (559)
T KOG1334|consen 327 CPHH---------------------------------------------------------------------------- 330 (559)
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 0000
Q ss_pred eeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCC
Q 001160 761 IKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 840 (1134)
Q Consensus 761 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~ 840 (1134)
+.. ...-.|++++|+.++.-|++...|-.|+++.-.... |.......++ ........+++.. .
T Consensus 331 -----l~~-d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~----G~~p~~~s~~------~~~~k~vYKGHrN-~ 393 (559)
T KOG1334|consen 331 -----LVE-DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD----GSEPDPSSPR------EQYVKRVYKGHRN-S 393 (559)
T ss_pred -----ccc-cCcccceeEEecCCccceeeeecccceEEecccccc----CCCCCCCcch------hhccchhhccccc-c
Confidence 000 133568999999999889999999889988433211 1100000000 0111111455333 4
Q ss_pred CceEEEEe-ccCCCEEEEEeC-CeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce
Q 001160 841 ESAACIAL-SKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915 (1134)
Q Consensus 841 ~~i~~~~~-s~dg~~la~~sd-g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~ 915 (1134)
..|..+-| -|...|+++|+| |.|.||+-.+++.+..+.+-..-|+|+.-+| --.+||+.+-|..|+||.-.+.+
T Consensus 394 ~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 394 RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP-HLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred cccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC-CCchhhccCCccceeeecCCccc
Confidence 45677654 678899999995 9999999999999999988777899999999 67899999999999999865443
No 212
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.62 E-value=1.4e-12 Score=143.52 Aligned_cols=319 Identities=13% Similarity=0.115 Sum_probs=196.3
Q ss_pred cEE-EEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcc
Q 001160 512 QFI-FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS 590 (1134)
Q Consensus 512 ~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 590 (1134)
+++ ++-..++.|.+.|..+.+....+......-..+.|+|||+++++++. ++.|.++|+.+++.+.++.... .
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~--~ 79 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVGG--N 79 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-SS--E
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecCC--C
Confidence 344 55667899999999998888888766555566889999999998864 6789999999999999988755 4
Q ss_pred eEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCC-----CCCcceEEEccCCCEEEEE-eCCCcEEEEECCC
Q 001160 591 LGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGG-----LPASPRLRFNKEGSLLAVT-TSDNGIKILANSD 663 (1134)
Q Consensus 591 v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~d~~~l~~~-~~dg~i~iw~~~~ 663 (1134)
...+++++||++++++. .++.+.++|.++.+++..+..... ...+.++..+|....++.. -+.+.|.+.|..+
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 67799999999998865 789999999999999988864321 1244566666666644433 3335555544332
Q ss_pred chhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccc
Q 001160 664 GVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAED 743 (1134)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1134)
...
T Consensus 160 ~~~----------------------------------------------------------------------------- 162 (369)
T PF02239_consen 160 PKN----------------------------------------------------------------------------- 162 (369)
T ss_dssp SSC-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 200
Q ss_pred cCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccC
Q 001160 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP 823 (1134)
Q Consensus 744 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~ 823 (1134)
+.. +.
T Consensus 163 -------------------------------------------~~~-------~~------------------------- 167 (369)
T PF02239_consen 163 -------------------------------------------LKV-------TT------------------------- 167 (369)
T ss_dssp -------------------------------------------EEE-------EE-------------------------
T ss_pred -------------------------------------------cce-------ee-------------------------
Confidence 000 00
Q ss_pred CCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe--CCeEEEEECCCCeEEEEecC----CCCceEEEEEcCC-----
Q 001160 824 PSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS----PPPAATFLAFHPQ----- 892 (1134)
Q Consensus 824 ~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~s~~----- 892 (1134)
+. . ........|+|++++++++. .+.|.++|.++++.+..+.. |..+...+ .+|.
T Consensus 168 ---------i~---~-g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw 233 (369)
T PF02239_consen 168 ---------IK---V-GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVW 233 (369)
T ss_dssp ---------EE------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEE
T ss_pred ---------ec---c-cccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEE
Confidence 00 0 23345677888888877765 57888888888877766532 22233222 1221
Q ss_pred ----CCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEE----cCCCcEEEEeCCCcccccceee
Q 001160 893 ----DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS----GADAQLCMWSIDKWEKLKSRFI 964 (1134)
Q Consensus 893 ----~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~----~~D~~i~iWd~~~~~~~~~~~~ 964 (1134)
.+...++.-....+.+||..+.+.++.+....++ .-+..+||++++... ....+|.++|.++.+.... +
T Consensus 234 ~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~--i 310 (369)
T PF02239_consen 234 ATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKT--I 310 (369)
T ss_dssp EEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE---H
T ss_pred eeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEE--E
Confidence 2222222222336668999999999999877776 778889999999987 4558899999999753221 1
Q ss_pred ecCCCCCCCCcCceEEEECCCCcEEEEE---ECCeEEEEeC-CCcceecc
Q 001160 965 QAPAGRQSPLVGETKVQFHNDQTHLLVV---HESQISVYDS-KLECSRSW 1010 (1134)
Q Consensus 965 ~~~~~~~~~~~~v~~~~fspdg~~l~~~---~d~~v~vwd~-~~~~~~~~ 1010 (1134)
....+ ..+.++.|++||+++.++ .++.|.+||. +.+.+..+
T Consensus 311 ~~~~~-----~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 311 TPGPG-----KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp HHHHT-------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred eccCC-----CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 11111 237899999999987774 3448999999 66665554
No 213
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=6.1e-14 Score=148.32 Aligned_cols=289 Identities=11% Similarity=0.131 Sum_probs=215.9
Q ss_pred eEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEc
Q 001160 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 338 ~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
++++.|.+...-+.+..||||++++|+|.+.-.|++||+.+-.....+. -....|.-.-+|
T Consensus 43 eLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh-------------------lDae~V~feiLs 103 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH-------------------LDAEVVDFEILS 103 (703)
T ss_pred HHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec-------------------ccccceeEEEec
Confidence 4566777888999999999999999999999999999998765442210 023456666677
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCC
Q 001160 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1134)
Q Consensus 418 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~ 497 (1134)
-|-..++.-..|.+|.+...-+- .. .+. -...-.+++++.-.-. |+.++....|+-++++.|+.+..|....
T Consensus 104 DD~SK~v~L~~DR~IefHak~G~-hy----~~R-IP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~ 175 (703)
T KOG2321|consen 104 DDYSKSVFLQNDRTIEFHAKYGR-HY----RTR-IPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDS 175 (703)
T ss_pred cchhhheEeecCceeeehhhcCe-ee----eee-cCcCCccccccCCCcc--EEEeecCcceEEEEcccccccccccccc
Confidence 78777777778888876553321 11 110 1122345555544442 4444455679999999999999998888
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecC------CCC-----cEEEEEECCCCCEEEEEeeCCCCC
Q 001160 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA------PGN-----WCTMMAYSADGTRLFSCGTSKEGE 566 (1134)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~------~~~-----~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1134)
+.++++.+++.. .+|++|+.+|.|..||.+.......+.. +.+ .|+++.|+.+|-.+++|+. .
T Consensus 176 ~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~ 249 (703)
T KOG2321|consen 176 GELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----T 249 (703)
T ss_pred ccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----C
Confidence 999999998776 7999999999999999987665544322 222 5999999999999999875 7
Q ss_pred CcEEEEeCCCCeeEEEecCccCcceEEEEEeCCC--CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCC
Q 001160 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1134)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 644 (1134)
|.+.|||+++.+++..-.....-+|..+.|.+.+ +.+++. +...++|||-.+|+....+... ..++.+++-|++
T Consensus 250 G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt---~~lND~C~~p~s 325 (703)
T KOG2321|consen 250 GSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT---SDLNDFCFVPGS 325 (703)
T ss_pred CcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecccc---CCcCceeeecCC
Confidence 8899999999888766554444478889997763 445544 5678999999999999888754 358899999999
Q ss_pred CEEEEEeCCCcEEEEECCC
Q 001160 645 SLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~ 663 (1134)
.+++++-.++.+..|=+..
T Consensus 326 Gm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 326 GMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ceEEEecCCCcceeEEccc
Confidence 9999999988887776543
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=3.8e-13 Score=134.48 Aligned_cols=285 Identities=15% Similarity=0.182 Sum_probs=189.7
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCC-CCEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLG 424 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd-g~~la 424 (1134)
+-.+..++|++.-- -+|++..|-.|++||-.. .+... +-......|+|++|-|. ++.|+
T Consensus 98 ~~dlr~~aWhqH~~-~fava~nddvVriy~kss-t~pt~------------------Lks~sQrnvtclawRPlsasela 157 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII-AFAVATNDDVVRIYDKSS-TCPTK------------------LKSVSQRNVTCLAWRPLSASELA 157 (445)
T ss_pred hcceeeEeechhhh-hhhhhccCcEEEEeccCC-CCCce------------------ecchhhcceeEEEeccCCcceee
Confidence 34688899999543 467888999999999665 22110 01224567999999995 55777
Q ss_pred EEeCCCeEEEEEcCCCCccc-----------eeeEEecccCCeeEEEEecCCCcEEEEEEcC-CCcEEEEECCCCeeeEE
Q 001160 425 VAFSKHIVHLYTYNPTGELR-----------QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVVAGRKQYT 492 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~-----------~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~-d~~i~iwd~~~~~~~~~ 492 (1134)
+|+..| |.+|..+...... +...-.+| .+|++++|.+||. .+++++. |..|.|||+.+|..+.-
T Consensus 158 vgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 158 VGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred eeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccc
Confidence 777766 9999875422111 11122345 5899999999999 6777764 67899999999987765
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEE
Q 001160 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1134)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1134)
....-+.+.-+.|+|++ ++|+++..|+..++|.....-.........+.|...+|+|+|++|+.... +. -.+|
T Consensus 234 ~~~glgg~slLkwSPdg--d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s---gs--p~ly 306 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSPDG--DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS---GS--PRLY 306 (445)
T ss_pred cccCCCceeeEEEcCCC--CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc---CC--ceEE
Confidence 54456778899998865 89999999999999965433333333334459999999999999886553 22 2333
Q ss_pred eCCC----Ce-----------eEEEe------cC--ccCcceEEEEEeCCCCEEEEEeCC--------CeEEEEECCCCe
Q 001160 573 NESE----GA-----------IKRTY------SG--FRKRSLGVVQFDTTRNRFLAAGDE--------FQIKFWDMDNMN 621 (1134)
Q Consensus 573 d~~~----~~-----------~~~~~------~~--~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~ 621 (1134)
.+.- +. ++..+ .+ .-.+...+++|.|.|.++++.-.. ..|.+||....-
T Consensus 307 sl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 307 SLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred EEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 3211 00 01111 11 012367889999999999985432 346778877654
Q ss_pred eEEEEe--CCCCCCCcceEEEcc---CCCEEEEEeCCCcEEEEECC
Q 001160 622 MLTTVD--ADGGLPASPRLRFNK---EGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 622 ~~~~~~--~~~~~~~v~~~~~s~---d~~~l~~~~~dg~i~iw~~~ 662 (1134)
.+.... ...+ ..-..+.|+| +|.+|.++-+.|.+.-|++.
T Consensus 387 ~vels~cg~i~g-e~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 387 PVELSYCGMIGG-EYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ceEEEecccccC-CCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 444331 1111 1245677776 67788888888888887763
No 215
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.61 E-value=7.4e-14 Score=137.52 Aligned_cols=237 Identities=13% Similarity=0.149 Sum_probs=181.6
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
..+|+|.+|++|+. .+|++.....|.||.......- ...+.++.|...|+++.|+|..+.|++
T Consensus 10 ~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w----------------~~~htls~Hd~~vtgvdWap~snrIvt 72 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLW----------------EPAHTLSEHDKIVTGVDWAPKSNRIVT 72 (361)
T ss_pred cCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCc----------------eeceehhhhCcceeEEeecCCCCceeE
Confidence 46999999999998 6788888899999998766521 122347789999999999999999999
Q ss_pred EeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeee----EEecCCCCCeE
Q 001160 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ----YTFEGHEAPVY 501 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~----~~~~~h~~~v~ 501 (1134)
|+.|..-++|....+...++...+..|...++++.|+|.+. .+|+|+.-+.|.||-.+...-- +.-+.+...|.
T Consensus 73 cs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~ 150 (361)
T KOG1523|consen 73 CSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT 150 (361)
T ss_pred ccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence 99999999999977777777777888999999999999999 8999999999999987654322 12234678899
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEc-----cCC-------------CceeEecCCCCcEEEEEECCCCCEEEEEeeCC
Q 001160 502 SVCPHHKESIQFIFSTAIDGKIKAWLY-----DYL-------------GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~~wd~-----~~~-------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
++.|+|.+ -+|++|+.|+..|++.. +.. +....+....+.+..+.|+|+|..|+-.+.
T Consensus 151 sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H-- 226 (361)
T KOG1523|consen 151 SLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH-- 226 (361)
T ss_pred eeeccCCc--ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC--
Confidence 99999976 89999999999999953 211 111133356779999999999999998874
Q ss_pred CCCCcEEEEeCCCCe-eEEEecCccCcceEEEEEeCCCCEEEEEeCC
Q 001160 564 EGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE 609 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 609 (1134)
|..+.+-|..... .+........ +..++.|-.+. .+++++.|
T Consensus 227 --ds~v~~~da~~p~~~v~~~~~~~l-P~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 227 --DSTVSFVDAAGPSERVQSVATAQL-PLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred --CCceEEeecCCCchhccchhhccC-CceeeEeecCC-ceeecCCC
Confidence 7778888876554 3333333333 66667666543 45555554
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=1.7e-12 Score=128.16 Aligned_cols=241 Identities=13% Similarity=0.159 Sum_probs=170.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcC-----CCcEEEEEC
Q 001160 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----DKMIKVWDV 484 (1134)
Q Consensus 410 ~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~-----d~~i~iwd~ 484 (1134)
...+++|+.|...+++|..+| .+||+.+.-+... ..+-+.+.+.-+...--.+.+.|+-|+. -..|.|||=
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 345599999999999998888 8999987633211 1111222222222211223223333332 247999996
Q ss_pred CCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcc-CCCceeEecCCC--CcEEEEEECCCCCEEEEEee
Q 001160 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPG--NWCTMMAYSADGTRLFSCGT 561 (1134)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~ 561 (1134)
...+++.++. ...+|.++.+.++ .+++. ..+.|.+|... +.+....+.... ....+++-+.+...|+.-|
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~----riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg- 155 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD----RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPG- 155 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC----eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCC-
Confidence 6777887775 6788999998653 44443 47899999887 444444443322 2333444333444455444
Q ss_pred CCCCCCcEEEEeCCCCee--EEEecCccCcceEEEEEeCCCCEEEEEeCCCe-EEEEECCCCeeEEEEeCCCCCCCcceE
Q 001160 562 SKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ-IKFWDMDNMNMLTTVDADGGLPASPRL 638 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1134)
-.-|+|.+-|+...+. ...+..|.. .|.|++.+-+|..++++|..|+ |||||..+|+++..+........|+++
T Consensus 156 --~k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i 232 (346)
T KOG2111|consen 156 --FKTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI 232 (346)
T ss_pred --CccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence 3568899999986655 467777777 9999999999999999998887 799999999999999766666789999
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 639 RFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 639 ~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+|||+..+||++++.|++.||.+...
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999998764
No 217
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.60 E-value=1.6e-11 Score=140.28 Aligned_cols=195 Identities=15% Similarity=0.178 Sum_probs=151.6
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCc-----CeEEEEEcCCCC
Q 001160 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI-----SVNRCVWGPDGL 421 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~-----~V~~i~~spdg~ 421 (1134)
+.|....+.-..+ .++.++.++.+.|||...+..+.. ..+.. ...-+.++++.-
T Consensus 88 ~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~--------------------i~~~er~~l~~~~~~g~s~~~~ 146 (967)
T KOG0974|consen 88 DWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSK--------------------IQSDERCTLYSSLIIGDSAEEL 146 (967)
T ss_pred ccccccchhhhcc-eEEEEEcCceEEEEecccCceehh--------------------cCCCceEEEEeEEEEeccCcEE
Confidence 3455566666666 466777789999999987655432 01111 223344677888
Q ss_pred EEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeE-EecCCCCCe
Q 001160 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPV 500 (1134)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~-~~~~h~~~v 500 (1134)
++++|+.-+.|.+|+....+... .+.+|.+.|.++.|+.||. ++++.|+|+++++|++.+++... +.-+|...|
T Consensus 147 ~i~~gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRv 221 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARV 221 (967)
T ss_pred EEEeccccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCccccccccee
Confidence 99999999999999998433222 4779999999999999999 99999999999999999988776 667899999
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC-CCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC
Q 001160 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1134)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1134)
+.+++++. .+++++.|.+.++|+.+..+.. .+..| ...+..++..++...+++++. |+.+++|++..
T Consensus 222 w~~~~~~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 222 WACCFLPN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNG 289 (967)
T ss_pred EEEEeccc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhc
Confidence 99999874 8999999999999976543333 45554 447899999998888888874 88899999764
No 218
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.59 E-value=2.4e-13 Score=156.36 Aligned_cols=270 Identities=14% Similarity=0.196 Sum_probs=185.1
Q ss_pred ccceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEE
Q 001160 335 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1134)
Q Consensus 335 ~~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 413 (1134)
..|..+..+. |...|..++.++....++++|+.||+|++||...-..-. ..++ ....+...++.+.+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~r-----------S~ltys~~~sr~~~ 1103 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSAR-----------SELTYSPEGSRVEK 1103 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceee-----------eeEEEeccCCceEE
Confidence 4566777777 999999999988874589999999999999987532211 0111 00012235778999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCC--Cccc--eeeEEeccc-C-CeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001160 414 CVWGPDGLMLGVAFSKHIVHLYTYNPT--GELR--QHLEIDAHV-G-GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1134)
Q Consensus 414 i~~spdg~~las~~~dg~i~iwd~~~~--~~~~--~~~~~~~h~-~-~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~ 487 (1134)
+...+.|+.+|+++.||.|++.+++-. .... +......+. + -|..-+|....+...++.+..-+.|..||+.+.
T Consensus 1104 vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~ 1183 (1431)
T KOG1240|consen 1104 VTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR 1183 (1431)
T ss_pred EEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh
Confidence 999999999999999999999998762 1111 111112222 2 234445554444336888888999999999877
Q ss_pred eeeEEec--CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC-CCcEEEEEECC---CCCEEEEEee
Q 001160 488 RKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSA---DGTRLFSCGT 561 (1134)
Q Consensus 488 ~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~---~~~~l~~~~~ 561 (1134)
....+++ ...+.|++++.+|.. .++++|+..|.+.+||++-......+... ..++..+..+| .....++++.
T Consensus 1184 ~~~w~lk~~~~hG~vTSi~idp~~--~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1184 HDAWRLKNQLRHGLVTSIVIDPWC--NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred hhHHhhhcCccccceeEEEecCCc--eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecc
Confidence 6555443 346889999998766 79999999999999999987776655432 34566555544 4456666654
Q ss_pred CCCCCCcEEEEeCCCCeeEEEecCccCc------------------ceEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 001160 562 SKEGESHLVEWNESEGAIKRTYSGFRKR------------------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 620 (1134)
.+.+.|.+|++.+|....++-...+. ......+...+..+++|+.|..|+.||....
T Consensus 1262 --~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1262 --SSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred --cCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 24667999999998766655433110 1122334444568899999999999998643
No 219
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.58 E-value=1.8e-10 Score=119.57 Aligned_cols=529 Identities=14% Similarity=0.138 Sum_probs=281.7
Q ss_pred ccCccccceEEEEecCCCCeeEEEEecCCCeEEEE------EeCCCcEEEEEccCccccccccceeeccccccccccccc
Q 001160 330 YSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLV------GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403 (1134)
Q Consensus 330 ~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llas------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1134)
|..+...++..+...|-+-|+-..|+|||+.++++ +...+.+.+.+.+.|+..+- ++
T Consensus 62 We~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi-Ty---------------- 124 (668)
T COG4946 62 WEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI-TY---------------- 124 (668)
T ss_pred HHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE-EE----------------
Confidence 44445567777777788899999999999976552 12334677777787775431 10
Q ss_pred cccCCcCeEE-EEEcCCCCEEEEEeCCCe----EEEEEcCCCCc-cceeeEEecccCCeeEEEEecCCCcEEEEEEcCCC
Q 001160 404 LNDAAISVNR-CVWGPDGLMLGVAFSKHI----VHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1134)
Q Consensus 404 l~~h~~~V~~-i~~spdg~~las~~~dg~----i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~ 477 (1134)
+ ...-+. ..|+|||+.|++...-.- -.+|.+..... .. .+ .-++.+.+.+ .||. ++.|-.--
T Consensus 125 f---Gr~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e---~L--nlGpathiv~-~dg~---ivigRnty 192 (668)
T COG4946 125 F---GRRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE---PL--NLGPATHIVI-KDGI---IVIGRNTY 192 (668)
T ss_pred e---ccccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee---ec--cCCceeeEEE-eCCE---EEEccCcc
Confidence 1 123333 459999999988754332 23343332211 11 11 2334555554 3342 33332111
Q ss_pred ------------cEEEEECCC-CeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcE
Q 001160 478 ------------MIKVWDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWC 544 (1134)
Q Consensus 478 ------------~i~iwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v 544 (1134)
.=++|--.. |+....+-...+.|.+-.+... ...+....||.=.+|..+-...-..-...-..-
T Consensus 193 dLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~---RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdY 269 (668)
T COG4946 193 DLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGE---RVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDY 269 (668)
T ss_pred cCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcc---eEEEEecccCccceEEeccCCchhhhcCCchhc
Confidence 123454332 2222223223333333222111 222333345444444433222211111111123
Q ss_pred EEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecC---c---cCc-ceE---EEE-EeC-CCCEEEEEeCCCeE
Q 001160 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG---F---RKR-SLG---VVQ-FDT-TRNRFLAAGDEFQI 612 (1134)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~---~~~-~v~---~~~-~~~-~~~~l~~~~~dg~i 612 (1134)
.+-..+.||+.++... .|.|++||..+.+..+.--+ . ... .+. -+. |++ +|.+++..|. |..
T Consensus 270 Y~R~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-Gka 343 (668)
T COG4946 270 YPRNANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKA 343 (668)
T ss_pred cccccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcE
Confidence 3444578999988653 45599999987654322111 1 000 010 011 222 5677777764 567
Q ss_pred EEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCC-cEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCc
Q 001160 613 KFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN-GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPL 691 (1134)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1134)
.+.+...+-.++.-. ...|.-..+.-+++-++.|..|| .+-|+|..++. .. .+.
T Consensus 344 Fi~~~~~~~~iqv~~----~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~k-r~e------------------- 398 (668)
T COG4946 344 FIMRPWDGYSIQVGK----KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VK-RIE------------------- 398 (668)
T ss_pred EEECCCCCeeEEcCC----CCceEEEEEccCCcceEEeccCCceEEEEecCCce-EE-Eee-------------------
Confidence 776665554444321 22466677777788889999998 89999988772 11 000
Q ss_pred cccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCccc
Q 001160 692 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA 771 (1134)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~ 771 (1134)
..
T Consensus 399 ------------------------------------------------------------------------------~~ 400 (668)
T COG4946 399 ------------------------------------------------------------------------------KD 400 (668)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 02
Q ss_pred ccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccC
Q 001160 772 ASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 851 (1134)
Q Consensus 772 ~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d 851 (1134)
-+.|.++..+++|+.++++.....+.+.|+ .+|......-.. .+-|+.++|+|+
T Consensus 401 lg~I~av~vs~dGK~~vvaNdr~el~vidi----------------------dngnv~~idkS~----~~lItdf~~~~n 454 (668)
T COG4946 401 LGNIEAVKVSPDGKKVVVANDRFELWVIDI----------------------DNGNVRLIDKSE----YGLITDFDWHPN 454 (668)
T ss_pred ccceEEEEEcCCCcEEEEEcCceEEEEEEe----------------------cCCCeeEecccc----cceeEEEEEcCC
Confidence 356789999999998888877777766655 344433322222 678999999999
Q ss_pred CCEEEEEe-CC----eEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEE--ecCcc
Q 001160 852 DSYVMSAS-GG----KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK--LKGHQ 924 (1134)
Q Consensus 852 g~~la~~s-dg----~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~--l~~h~ 924 (1134)
++++|.+- +| .|+++|+.+++....-. ....-.+-+|.| ++++|..-+.- -.|..+.+.+.. +..|+
T Consensus 455 sr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~-d~ryLYfLs~R----sLdPs~Drv~fnf~f~~vs 528 (668)
T COG4946 455 SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDP-DGRYLYFLSAR----SLDPSNDRVIFNFSFQRVS 528 (668)
T ss_pred ceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCC-CCcEEEEEecc----ccCCCCCeeEEEEEEeeec
Confidence 99999986 44 59999999887755433 444456678999 88888765421 111111111111 11122
Q ss_pred cceEEEE----EecCCCEEEE-EcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE--------
Q 001160 925 NRITGLA----FSPTLNALVS-SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-------- 991 (1134)
Q Consensus 925 ~~i~~l~----~s~d~~~l~s-~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-------- 991 (1134)
.+-..+- .||-.+..-. -+.++.+-+=+++... . .+....+ .-..++=-.+|+.+..
T Consensus 529 kPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~---e-P~pVee~------dY~sI~~lk~~killfs~pi~Gef 598 (668)
T COG4946 529 KPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRV---E-PFPVEEG------DYRSIAGLKNGKILLFSYPIHGEF 598 (668)
T ss_pred cceEEEecCCCCChhhcCchhcCccccceehhhhcccc---c-ccccCcc------ceeEeeecCCCeEEEEEeeccchh
Confidence 2211110 1221111111 1223333322222211 0 0111110 1112222222222211
Q ss_pred -----E--ECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001160 992 -----V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 992 -----~--~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~ 1048 (1134)
+ .-|.+.+||++.+....+ ...++++..|+|++.++. -.||.+++++++.
T Consensus 599 s~yy~gq~~kG~l~~ydletkk~~e~------k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 599 SQYYWGQPEKGRLEKYDLETKKVEEY------KDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred hhhhcCCCccceEEEEecchhhHHHH------hcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 1 236788999977766555 467999999999999888 7899999999986
No 220
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2.8e-12 Score=138.77 Aligned_cols=566 Identities=12% Similarity=0.111 Sum_probs=340.7
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
.....|++|+.... ++|+|+.||.++|-.+.+...-.. .--++..+...-.+.+.||.+.|..+.|+.+.+.|-+
T Consensus 14 nvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~----~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt 88 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLN----KSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT 88 (1189)
T ss_pred CceEEEEEEcccCC-eEEeccccceeEEEEccccCCccc----ccccccccccchhhhhccCcceEEEEEeccccccccc
Confidence 45788999999887 789999999999998876543211 0011122222333458999999999999999999999
Q ss_pred EeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeee-EEecCCCCCeEEEE
Q 001160 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YTFEGHEAPVYSVC 504 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~i~ 504 (1134)
...+|.|.+|-+-.|.-..... -....+.|.++.|+.||. .|+....||.|.+=.+...+.- +.+++. ....+.
T Consensus 89 SDt~GlIiVWmlykgsW~EEMi-NnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ 163 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEMI-NNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVL 163 (1189)
T ss_pred cCCCceEEEEeeecccHHHHHh-hCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--ecccee
Confidence 9999999999998876554221 123456799999999999 6888888998877664432211 123321 123566
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCCC-------cee----EecCCCCcEEEEEEC--------CCCCEEEEEeeCCCC
Q 001160 505 PHHKESIQFIFSTAIDGKIKAWLYDYLG-------SRV----DYDAPGNWCTMMAYS--------ADGTRLFSCGTSKEG 565 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~-------~~~----~~~~~~~~v~~~~~s--------~~~~~l~~~~~~~~~ 565 (1134)
|+++. ..++.+-..|.++++|.+..- +.. .+......+..+.|. ||...++.|..
T Consensus 164 ws~D~--~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~---- 237 (1189)
T KOG2041|consen 164 WSEDL--EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA---- 237 (1189)
T ss_pred ecccH--HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----
Confidence 76654 667777788999999875321 111 112222345555552 57778888874
Q ss_pred CCcEEEEeCCC-CeeEEEecCccCcceEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCeeEEEEeCCCCCCCc
Q 001160 566 ESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---------FQIKFWDMDNMNMLTTVDADGGLPAS 635 (1134)
Q Consensus 566 ~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1134)
+|.+.+..-.+ ..++..-.+ - .+....|+++|..++.+|.+ +.|.+|.. -|+.+.+++.++. .|
T Consensus 238 nGr~QiMR~eND~~Pvv~dtg-m--~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~I 311 (1189)
T KOG2041|consen 238 NGRMQIMRSENDPEPVVVDTG-M--KIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--CI 311 (1189)
T ss_pred CceehhhhhcCCCCCeEEecc-c--EeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--ee
Confidence 55566654433 333322222 1 57778999999999998743 25566643 4677788877654 68
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCC
Q 001160 636 PRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 715 (1134)
Q Consensus 636 ~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1134)
++++|-..|-.++.+ .|+.|.+=+++.... ...+.. .+
T Consensus 312 t~lsWEg~gLriA~A-vdsfiyfanIRP~yk-Wgy~e~---Tv------------------------------------- 349 (1189)
T KOG2041|consen 312 TGLSWEGTGLRIAIA-VDSFIYFANIRPEYK-WGYIEE---TV------------------------------------- 349 (1189)
T ss_pred eeeEEcCCceEEEEE-ecceEEEEeecccce-EEEeee---EE-------------------------------------
Confidence 999998888777765 466887766654311 000000 00
Q ss_pred CCCCcccCccCCCCcccccccccccccc---cCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeec
Q 001160 716 GPPAVSISSLGTIDGSRLVDVKPRVAED---VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS 792 (1134)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 792 (1134)
-++-... .-.|.+||..+....-+. -....++++..+--.|+.-..
T Consensus 350 ---------------------Vy~y~~~e~p~y~i~Fwdtk~nek~vK~----------V~~~~~~a~~~ehCvL~~~~d 398 (1189)
T KOG2041|consen 350 ---------------------VYVYQKEELPQYGIMFWDTKTNEKTVKT----------VTHFENMAFYREHCVLINRQD 398 (1189)
T ss_pred ---------------------EEEEccCCCcceEEEEEecccChhhhhh----------hcceeehheecccEEEEeccc
Confidence 0000000 135778887764332211 122345666666555565555
Q ss_pred cCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCe
Q 001160 793 NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK 872 (1134)
Q Consensus 793 dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~ 872 (1134)
+|.+.-++.-.+. + ....+.+-+ .-|+.+... -..|.-.-..-++.+++.++...+.+|.....+
T Consensus 399 ~~~i~e~s~le~~----~---~~~~l~LCN-SIGT~lD~k-------ytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK 463 (1189)
T KOG2041|consen 399 DGVIPEYSTLENR----S---RVYFLQLCN-SIGTSLDYK-------YTDIRPKFVCVNGICVVIASEERYFIWHYVLPK 463 (1189)
T ss_pred cCCCcchhhhhcc----c---ceEEEeeec-ccCCcCCCC-------cceeeeeEEEecceEEEEeccccEEEEEEeccc
Confidence 6666544211000 0 000000111 001111100 112222222337788889998889999876655
Q ss_pred EEEEecC---CCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEE
Q 001160 873 VMTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLC 949 (1134)
Q Consensus 873 ~~~~~~~---~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~ 949 (1134)
....+.+ +...- |+-| ..-+|+.|+++. .. .+++.|..++|.+++.| .++|..+-..|.|.
T Consensus 464 ~~s~l~~~k~rkegr----~h~D---dtp~ga~d~~l~---ys----~kt~~G~~DpICAl~~s--dk~l~vareSG~I~ 527 (1189)
T KOG2041|consen 464 FNSVLAGVKIRKEGR----FHGD---DTPEGAQDRTLE---YS----TKTLLGSKDPICALCIS--DKFLMVARESGGIY 527 (1189)
T ss_pred hhhhhhhhhhccccc----ccCC---CCccchhhceee---cc----ceeeccCCCcceeeeec--ceEEEEEeccCceE
Confidence 4333332 21111 3321 223455665542 11 35678889999999986 57888888899999
Q ss_pred EEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeC----CCcceeccCCCCCCCCCeEEEE
Q 001160 950 MWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS----KLECSRSWSPKDALPAPISSAI 1024 (1134)
Q Consensus 950 iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~----~~~~~~~~~~~~~h~~~v~~v~ 1024 (1134)
-+.+.+...... .... ..+..++..-+..++|+ -.-|.+.+.|+ ++.++..+.... ...|+.+.
T Consensus 528 rySl~nv~l~n~------y~~n---~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~e--rrDVWd~~ 596 (1189)
T KOG2041|consen 528 RYSLNNVVLTNS------YPVN---PSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSE--RRDVWDYE 596 (1189)
T ss_pred EEEecceeeeec------cccC---chheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhh--hhhhhhhh
Confidence 999887542211 1111 35678888888888887 45677777776 455555333322 67899999
Q ss_pred EccCCCEEEEEecCCcEEEEeCCC
Q 001160 1025 YSCDGLLVYAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 1025 ~s~dg~~l~~~~~dg~I~vwd~~~ 1048 (1134)
|..|...|++--....+.|++-.+
T Consensus 597 Wa~dNp~llAlmeKtrmyifrgnd 620 (1189)
T KOG2041|consen 597 WAQDNPNLLALMEKTRMYIFRGND 620 (1189)
T ss_pred hccCCchHHhhhhhceEEEecCcC
Confidence 998877666554555678887554
No 221
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=8.2e-14 Score=159.40 Aligned_cols=234 Identities=13% Similarity=0.116 Sum_probs=151.7
Q ss_pred ccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCC--CcEEEEEccCccccccccceeeccccccccccccccc
Q 001160 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1134)
Q Consensus 328 ~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 405 (1134)
.++.+|...........+...+.+++|||||++++.++..+ ..|.+||+.+++..... .+.
T Consensus 185 ~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-----------------~~~ 247 (429)
T PRK01742 185 EVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-----------------SFR 247 (429)
T ss_pred EEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------cCC
Confidence 44444543333333344788899999999999655443322 37999999887532110 022
Q ss_pred cCCcCeEEEEEcCCCCEEEEEe-CCCeEEEE--EcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEE
Q 001160 406 DAAISVNRCVWGPDGLMLGVAF-SKHIVHLY--TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1134)
Q Consensus 406 ~h~~~V~~i~~spdg~~las~~-~dg~i~iw--d~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iw 482 (1134)
+| ..+++|||||+.|+.++ .+|.+.|| |+.++.. . .+..+...+....|+|||+. +++++..++...||
T Consensus 248 g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~ 319 (429)
T PRK01742 248 GH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVY 319 (429)
T ss_pred Cc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEE
Confidence 23 44689999999998875 57766555 5555432 2 45567777889999999994 33345567888888
Q ss_pred ECCC-CeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEee
Q 001160 483 DVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1134)
Q Consensus 483 d~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1134)
++.. +.....+ ++.. ....|+|+ |+.|+.++.++ +.+||+.++........ .....+.|+|||++++.++.
T Consensus 320 ~~~~~~~~~~~l-~~~~--~~~~~SpD--G~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 320 RMSASGGGASLV-GGRG--YSAQISAD--GKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSST 391 (429)
T ss_pred EEECCCCCeEEe-cCCC--CCccCCCC--CCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEc
Confidence 7653 2222333 3443 45667665 47888877765 55599987765433222 23456789999999998875
Q ss_pred CCCCCCcEEEEeC--CCCeeEEEecCccCcceEEEEEeCC
Q 001160 562 SKEGESHLVEWNE--SEGAIKRTYSGFRKRSLGVVQFDTT 599 (1134)
Q Consensus 562 ~~~~~~~i~~wd~--~~~~~~~~~~~~~~~~v~~~~~~~~ 599 (1134)
++...+|.+ .+|+.++.+..+.. .+...+|+|-
T Consensus 392 ----~g~~~~l~~~~~~G~~~~~l~~~~g-~~~~p~wsp~ 426 (429)
T PRK01742 392 ----QGLGKVLQLVSADGRFKARLPGSDG-QVKFPAWSPY 426 (429)
T ss_pred ----CCCceEEEEEECCCCceEEccCCCC-CCCCcccCCC
Confidence 344555553 35778888877665 6778888874
No 222
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.58 E-value=1.4e-11 Score=140.76 Aligned_cols=278 Identities=13% Similarity=0.111 Sum_probs=189.9
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCC--cCeEEEEEcCCCCEEE
Q 001160 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA--ISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~--~~V~~i~~spdg~~la 424 (1134)
+++++.++-. +++|| ++.-.|.+||+..+..+.. ......+..|. +.+.+ .+-+++
T Consensus 8 ~~l~~~~~~~--~~lla--g~gp~i~~yd~~s~~li~~-------------~~~~~~~~~H~~e~~~~l-----~~~~~v 65 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLA--GSGPEILVYDLSSGCLIRH-------------LIQSKILEVHRGEGKVKL-----LSGKIV 65 (967)
T ss_pred ccccchhhcc--ceeee--cCCCceEEeeCCchhHhhh-------------hhhhccccccccccccee-----ccceEE
Confidence 3555555555 44554 3356899999998876642 11111233440 00110 233444
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCe--EE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV--YS 502 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v--~~ 502 (1134)
++..-+.+..=+..-. .+..-...|....+.-+.+ .++.+..++.+.+||...+.....+....... .+
T Consensus 66 ~~~~~~~v~~~~~~~~-------~~~~~s~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~ 136 (967)
T KOG0974|consen 66 TCAKSDEVYVKEASNQ-------IIERFSDWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSS 136 (967)
T ss_pred EEEeecceeecchhhh-------hhhhccccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeE
Confidence 5444333332222211 1111233444455666666 67888888999999988887766665332211 11
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEE-
Q 001160 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR- 581 (1134)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~- 581 (1134)
+-+-...+.-++++|+.-+.|.+|+....+....+.+|.+.+.++.++.||+++++++. |..+++|++.+++...
T Consensus 137 ~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~ 212 (967)
T KOG0974|consen 137 LIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGC 212 (967)
T ss_pred EEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCc
Confidence 11212223368999999999999999865566678999999999999999999999985 7789999999988776
Q ss_pred EecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
+.-+|.. .+..++|.|+ .++++++|.+.++|+.. ++.+..+..|.. ..+..++..++...+++++.|+.+++|+.
T Consensus 213 ~~fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 213 TGFGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred ccccccc-eeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 5566776 7888889987 99999999999999764 455557777755 37899999999999999999999999997
Q ss_pred CCc
Q 001160 662 SDG 664 (1134)
Q Consensus 662 ~~~ 664 (1134)
.+.
T Consensus 288 ~~r 290 (967)
T KOG0974|consen 288 NGR 290 (967)
T ss_pred hcc
Confidence 653
No 223
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.57 E-value=2.1e-13 Score=134.39 Aligned_cols=233 Identities=17% Similarity=0.182 Sum_probs=180.4
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEEC-C
Q 001160 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV-V 485 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~-~ 485 (1134)
-..+|+|.||++|++.+|++..+..|.||...+.+......++..|...|+.++|+|... .|++|+.|..-++|.. .
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 346899999999999999999999999999998887777778999999999999999998 7999999999999998 3
Q ss_pred CCe--eeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCcee----EecCCCCcEEEEEECCCCCEEEEE
Q 001160 486 AGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----DYDAPGNWCTMMAYSADGTRLFSC 559 (1134)
Q Consensus 486 ~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1134)
.++ +.-.+..+....+++.|+|.+ +.|++|+.-+.|.+|-++....-. .-......|.++.|+|++-+++++
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 443 344566789999999999987 799999999999999887544321 334456689999999999999998
Q ss_pred eeCCCCCCcEEEEeC-----CC-------------CeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCe
Q 001160 560 GTSKEGESHLVEWNE-----SE-------------GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1134)
Q Consensus 560 ~~~~~~~~~i~~wd~-----~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1134)
+. |+..+++.. +. |+++..+. ...+.+..+.|+|+|+.|+-.+.|..+.+=|.....
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 86 666777743 11 22333343 233479999999999999999999999999987765
Q ss_pred -eEEEEeCCCCCCCcceEEEccCCCEEEEE
Q 001160 622 -MLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1134)
Q Consensus 622 -~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 650 (1134)
.+...... .-+..++.|-.+...++.|
T Consensus 240 ~~v~~~~~~--~lP~ls~~~ise~~vv~ag 267 (361)
T KOG1523|consen 240 ERVQSVATA--QLPLLSVSWISENSVVAAG 267 (361)
T ss_pred hhccchhhc--cCCceeeEeecCCceeecC
Confidence 23332221 1355667776655444433
No 224
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.57 E-value=9e-09 Score=126.02 Aligned_cols=535 Identities=10% Similarity=0.083 Sum_probs=298.4
Q ss_pred cCCcCeEEEEEcCCCCEEEEEeCCCeEEEE----EcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEE
Q 001160 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLY----TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 406 ~h~~~V~~i~~spdg~~las~~~dg~i~iw----d~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~i 481 (1134)
...+.|.++.+-++...++.+..+|.|.+. +..+.. +. ....-..+|.+++||||++ .|+..+.++++.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~ 146 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLL 146 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence 356789999999999999999999999999 444422 22 2233567899999999999 6666666777776
Q ss_pred EECCCCeee------------------------EEecCCCC------------------Ce----EEEEeeccCCccEEE
Q 001160 482 WDVVAGRKQ------------------------YTFEGHEA------------------PV----YSVCPHHKESIQFIF 515 (1134)
Q Consensus 482 wd~~~~~~~------------------------~~~~~h~~------------------~v----~~i~~~~~~~~~~l~ 515 (1134)
.+ .+-..+ ..|+|-.+ .+ ..+.++..+||.+++
T Consensus 147 mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFA 225 (928)
T PF04762_consen 147 MT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFA 225 (928)
T ss_pred Ee-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEE
Confidence 54 211111 11211100 01 223344477889999
Q ss_pred EEec---C---CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCc---
Q 001160 516 STAI---D---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF--- 586 (1134)
Q Consensus 516 s~~~---d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~--- 586 (1134)
+.+. . +.+|+|+-+ +.....-....+--.+++|-|.|+++++... ..+...|.+|. ++|-.-..|...
T Consensus 226 Vss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfE-rNGLrhgeF~l~~~~ 302 (928)
T PF04762_consen 226 VSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFE-RNGLRHGEFTLRFDP 302 (928)
T ss_pred EEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEe-cCCcEeeeEecCCCC
Confidence 8875 2 579999865 3322222333334468899999999998765 23345566666 445444444432
Q ss_pred cCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCee--EEEEeCCCCCCCcceEEEcc-CCCEEEEEeCCCcEEEEECCC
Q 001160 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM--LTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 587 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iw~~~~ 663 (1134)
.+..|..+.|++|+..|+..-.|. |++|...+... .+.+..... ..+..+.|+| +...|...+.+|.+..++..-
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~ 380 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW 380 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEEecCCcEEEEEEEE
Confidence 334789999999999999977655 99999988663 333443322 2345699999 455677777778887766532
Q ss_pred chhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCccccc-cccccccc
Q 001160 664 GVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLV-DVKPRVAE 742 (1134)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 742 (1134)
... .+.. ..+ |...+++-
T Consensus 381 ~v~-----~s~~--------------------------------------------------------~~~~D~g~vaVI 399 (928)
T PF04762_consen 381 DVS-----RSPG--------------------------------------------------------SSPNDNGTVAVI 399 (928)
T ss_pred EEE-----ecCC--------------------------------------------------------CCccCceEEEEE
Confidence 100 0000 001 11122222
Q ss_pred ccCccceeccCCCCC--ccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCccc
Q 001160 743 DVDKIKSWRIPDISD--PSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQL 820 (1134)
Q Consensus 743 ~~~~i~~w~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 820 (1134)
+..++++-.+..... +.....+.+ ...|..++|++++..+++...||.+.+|.+..............
T Consensus 400 DG~~lllTpf~~a~VPPPMs~~~l~~-----~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~----- 469 (928)
T PF04762_consen 400 DGNKLLLTPFRRAVVPPPMSSYELEL-----PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLL----- 469 (928)
T ss_pred eCCeEEEecccccCCCchHhceEEcC-----CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchh-----
Confidence 224455444443222 222233332 46799999999998899999999999998755332210000000
Q ss_pred ccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-C---CeEEEEECCCCe---EEEEecCCCCceEEEEEcCCC
Q 001160 821 WQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-G---GKVSLFNMMTFK---VMTMFMSPPPAATFLAFHPQD 893 (1134)
Q Consensus 821 w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-d---g~i~vwd~~~~~---~~~~~~~~~~~i~~l~~s~~~ 893 (1134)
............... . ...+..++|..+..+++... + ..+.++++...+ .......-.+.+..+...+ .
T Consensus 470 ~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 545 (928)
T PF04762_consen 470 SSISLDSMDISDSEL--P-LGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-D 545 (928)
T ss_pred hhccccccccccccc--c-cccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-C
Confidence 000000000000000 1 45678899988888777766 3 468888874332 2233333344555566665 4
Q ss_pred CcEEEEEeCCCcEEEEEcCCceE-EEEecCcccceEEEEEecCCC---EEEEEcCCCcEEEEeCCCcccccceeeecCCC
Q 001160 894 NNIIAIGMEDSSVQIYNVRVDEV-KTKLKGHQNRITGLAFSPTLN---ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAG 969 (1134)
Q Consensus 894 ~~~lasg~~dg~i~iwd~~~~~~-~~~l~~h~~~i~~l~~s~d~~---~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~ 969 (1134)
...++.-..||.+...+...... +..|..-...+ .+....+.. .++.-+..+.+++ ++.. +.
T Consensus 546 ~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~-~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~-----la---- 611 (928)
T PF04762_consen 546 SGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWM-EVCQINGSEDKRVLFGLSSNGRLYA----NSRL-----LA---- 611 (928)
T ss_pred CcEEEEEECCCEEEEeecCCCccccccCCCCCcEE-EEEEECCccceeEEEEECCCCEEEE----CCEE-----Ee----
Confidence 44466677899998776654422 22333222222 222222322 4444444454442 1111 11
Q ss_pred CCCCCcCceEEEECCCCcEEEE-EECCeEEEEeCCC--cceeccCCCC--CCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 001160 970 RQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKL--ECSRSWSPKD--ALPAPISSAIYSCDGLLVYAGFCDGAIGVF 1044 (1134)
Q Consensus 970 ~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~~~--~~~~~~~~~~--~h~~~v~~v~~s~dg~~l~~~~~dg~I~vw 1044 (1134)
..+++.++ .+.+|+. .....+++.++.. ..+....... .+...+.. -..|..|+++-....=.|.
T Consensus 612 -----~~~tSF~v--~~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~---VERGsriVt~vp~~~~vVL 681 (928)
T PF04762_consen 612 -----SNCTSFAV--TDSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRR---VERGSRIVTAVPSDTSVVL 681 (928)
T ss_pred -----cCCceEEE--EcCEEEEEecCceEEEEECcCchhhcccccCcccccccccccc---CccCCEEEEEeCCCceEEE
Confidence 23455555 3445544 6677788888851 1111110000 00112222 2567788877666555666
Q ss_pred eCCCcce
Q 001160 1045 DAETLRF 1051 (1134)
Q Consensus 1045 d~~~~~~ 1051 (1134)
-+.-|.+
T Consensus 682 QmPRGNL 688 (928)
T PF04762_consen 682 QMPRGNL 688 (928)
T ss_pred EcCCCch
Confidence 6665543
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=9.6e-13 Score=129.91 Aligned_cols=242 Identities=17% Similarity=0.222 Sum_probs=167.9
Q ss_pred CCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCc--eEEEEEcCCCCcEEEE-EeCC------CcEEEEE
Q 001160 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPA--ATFLAFHPQDNNIIAI-GMED------SSVQIYN 910 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~--i~~l~~s~~~~~~las-g~~d------g~i~iwd 910 (1134)
+....+++|..|...+++|.+...+||+.+..+.......+.+. +.-+-| ..++||. |+.+ ..|.|||
T Consensus 5 ~~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf---R~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 5 EPKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLF---RSNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred cCceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhh---hhceEEEecCCCCCCCCCceEEEEe
Confidence 34456699999999999999988999999875543333222222 333333 2345443 4333 4799999
Q ss_pred cCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCC-cccccceeeecCCCCCCCCcCceEEEECCCCcEE
Q 001160 911 VRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK-WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 989 (1134)
Q Consensus 911 ~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l 989 (1134)
=...+++.++. ...+|.++.+++| .|+.+- .+.|.||.... .+.+. .+...... .+..+++-+..-.+|
T Consensus 82 D~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~--~~et~~NP----kGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 82 DLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLH--VIETRSNP----KGLCSLCPTSNKSLL 151 (346)
T ss_pred cccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhhee--eeecccCC----CceEeecCCCCceEE
Confidence 66677888876 6788999999876 455443 66799999984 33222 22222111 123333333344455
Q ss_pred EE-E-ECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCc-EEEEeCCCcceeeecCCccccccccc
Q 001160 990 LV-V-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA-IGVFDAETLRFRCRIGPSAYIPTYAV 1066 (1134)
Q Consensus 990 ~~-~-~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~-I~vwd~~~~~~~~~~~~~~~~~~~~~ 1066 (1134)
|. | .-|+|.|-|+.......-....+|.+.|.+++.+-+|.+|||+|..|+ |||||..+|+++.+++...
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~------- 224 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV------- 224 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-------
Confidence 55 4 458999999933333111223567999999999999999999999998 8999999999999987442
Q ss_pred CCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1067 SNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1067 ~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
......+++|+| ++.+|+++|.-|+|+++.+....
T Consensus 225 -d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 225 -DRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred -chheEEEEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 124455999999 88999999999999999987655
No 226
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2.7e-12 Score=128.51 Aligned_cols=284 Identities=13% Similarity=0.138 Sum_probs=188.8
Q ss_pred cceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCC
Q 001160 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1134)
Q Consensus 773 ~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg 852 (1134)
..+..+++++--..++++..|-.|++|+-.... -..+.. . . ...|+|++|-|.+
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~--------------------pt~Lks--~---s-QrnvtclawRPls 152 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC--------------------PTKLKS--V---S-QRNVTCLAWRPLS 152 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCC--------------------Cceecc--h---h-hcceeEEEeccCC
Confidence 456778888876678889999999999743200 001111 1 2 6789999999954
Q ss_pred -CEEEEEeCCeEEEEECCCCe----E----------EEEecCCCCceEEEEEcCCCCcEEEEEe-CCCcEEEEEcCCceE
Q 001160 853 -SYVMSASGGKVSLFNMMTFK----V----------MTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVRVDEV 916 (1134)
Q Consensus 853 -~~la~~sdg~i~vwd~~~~~----~----------~~~~~~~~~~i~~l~~s~~~~~~lasg~-~dg~i~iwd~~~~~~ 916 (1134)
+-+++|..+.|.||..+..- . +..-.+| .+|++++|.+ ||..+++++ .|..|.|||.+++..
T Consensus 153 aselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~ 230 (445)
T KOG2139|consen 153 ASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQK 230 (445)
T ss_pred cceeeeeecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCc
Confidence 57777779999999876321 1 1112234 5799999999 788888877 467899999999877
Q ss_pred EEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCC-cccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECC
Q 001160 917 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK-WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES 995 (1134)
Q Consensus 917 ~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~ 995 (1134)
+.-..--.+.++-+.||||+.+|..+.-|+..++|+... ....+. .+. . ..|...+|+|+|++|..+..+
T Consensus 231 ~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw-~lg--s------grvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 231 IPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERW-ILG--S------GRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred ccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecce-ecc--C------CceeeeeecCCCCEEEEEEcC
Confidence 655544556788999999999999999999999995443 222111 111 1 358899999999999887666
Q ss_pred eEEEEeC--CCcceecc--------------------CCCCCCCCCeEEEEEccCCCEEEEEecCCc--------EEEEe
Q 001160 996 QISVYDS--KLECSRSW--------------------SPKDALPAPISSAIYSCDGLLVYAGFCDGA--------IGVFD 1045 (1134)
Q Consensus 996 ~v~vwd~--~~~~~~~~--------------------~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~--------I~vwd 1045 (1134)
.-++|.+ .++..... ....--.+++.+++|.|.|.+||+.-..+. |..||
T Consensus 302 sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fd 381 (445)
T KOG2139|consen 302 SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFD 381 (445)
T ss_pred CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhc
Confidence 6666665 11111110 011112578999999999999998654433 66777
Q ss_pred CCCcceeeecCCcccccccccCCCCccEEEeecC--CCCCEEEEEeCCCcEEEEecC
Q 001160 1046 AETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHP--SEPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
....-.+.-.-.. . ....+|-.++|+| .++.+|..+=..|.+.-|++.
T Consensus 382 tr~sp~vels~cg------~-i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 382 TRKSPPVELSYCG------M-IGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ccccCceEEEecc------c-ccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 7654333222111 0 1113344566655 466777777777888877764
No 227
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.54 E-value=3.3e-13 Score=141.80 Aligned_cols=117 Identities=26% Similarity=0.441 Sum_probs=105.9
Q ss_pred CCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEE
Q 001160 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 918 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~ 918 (1134)
.+.|...+|||||++||+.+ ||.++|||..+.+++..++..-+...|++||| ||++|++|++|-.|.||.+...+++.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence 56788999999999999999 99999999999998888887788999999999 99999999999999999999999999
Q ss_pred EecCcccceEEEEEec-------------------------------C----C-------------CEEEEEcCCCcEEE
Q 001160 919 KLKGHQNRITGLAFSP-------------------------------T----L-------------NALVSSGADAQLCM 950 (1134)
Q Consensus 919 ~l~~h~~~i~~l~~s~-------------------------------d----~-------------~~l~s~~~D~~i~i 950 (1134)
.=.+|.+.|..|+|.| + + -.+.++|.|..+.+
T Consensus 369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL 448 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL 448 (636)
T ss_pred eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEE
Confidence 9999999999999972 0 1 25778899999999
Q ss_pred EeCCCcc
Q 001160 951 WSIDKWE 957 (1134)
Q Consensus 951 Wd~~~~~ 957 (1134)
||+....
T Consensus 449 WDlteD~ 455 (636)
T KOG2394|consen 449 WDLTEDV 455 (636)
T ss_pred Eecchhh
Confidence 9998754
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=3.7e-12 Score=145.23 Aligned_cols=236 Identities=10% Similarity=0.106 Sum_probs=157.1
Q ss_pred cEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe---CCCeEEEEEcCCCCcccee
Q 001160 370 DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF---SKHIVHLYTYNPTGELRQH 446 (1134)
Q Consensus 370 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~---~dg~i~iwd~~~~~~~~~~ 446 (1134)
.|.+||........ +..+...+.+.+|||||+.||..+ .+..|.+|++.+++..
T Consensus 180 ~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~--- 236 (429)
T PRK03629 180 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--- 236 (429)
T ss_pred eEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE---
Confidence 68888887554321 334667899999999999999764 3457999999887532
Q ss_pred eEEecccCCeeEEEEecCCCcEEEE-EEcCCC--cEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecC-Ce
Q 001160 447 LEIDAHVGGVNDIAFAHPNKQLCIV-TCGDDK--MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-GK 522 (1134)
Q Consensus 447 ~~~~~h~~~v~~l~~s~d~~~~~l~-sg~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d-~~ 522 (1134)
.+....+.+..++|+|||+. |+ +.+.++ .|++||+.+++... +..+...+....|+|++ +.|+..+.+ +.
T Consensus 237 -~l~~~~~~~~~~~~SPDG~~--La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG--~~I~f~s~~~g~ 310 (429)
T PRK03629 237 -QVASFPRHNGAPAFSPDGSK--LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDS--QNLAYTSDQAGR 310 (429)
T ss_pred -EccCCCCCcCCeEECCCCCE--EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCC--CEEEEEeCCCCC
Confidence 22223334567899999995 44 334444 59999998887544 44445567788888754 777666654 44
Q ss_pred EEEE--EccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCC
Q 001160 523 IKAW--LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1134)
Q Consensus 523 i~~w--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 600 (1134)
..+| |+.++.. ..+...........|+|||++++..+.. ++...|.+||+.+++.. .+.... ......|+|||
T Consensus 311 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g~~~-~Lt~~~--~~~~p~~SpDG 385 (429)
T PRK03629 311 PQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQ-VLTDTF--LDETPSIAPNG 385 (429)
T ss_pred ceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCCCeE-EeCCCC--CCCCceECCCC
Confidence 4555 5554433 3333344456678999999999876642 23457999999888644 333221 23457899999
Q ss_pred CEEEEEeCCCe---EEEEECCCCeeEEEEeCCCCCCCcceEEEcc
Q 001160 601 NRFLAAGDEFQ---IKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1134)
Q Consensus 601 ~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1134)
+.++.++.++. ++++++. +.....+..+. ..+...+|+|
T Consensus 386 ~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~--~~~~~p~Wsp 427 (429)
T PRK03629 386 TMVIYSSSQGMGSVLNLVSTD-GRFKARLPATD--GQVKFPAWSP 427 (429)
T ss_pred CEEEEEEcCCCceEEEEEECC-CCCeEECccCC--CCcCCcccCC
Confidence 99999886654 6777874 44455555443 3567788886
No 229
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.53 E-value=3.7e-14 Score=146.23 Aligned_cols=273 Identities=15% Similarity=0.167 Sum_probs=214.4
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe
Q 001160 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
.-..+.|+.+|+++ +.|+..|.|-.+|+.++...... .-...|.++.|-.+.+++|++
T Consensus 131 GPY~~~ytrnGrhl-llgGrKGHlAa~Dw~t~~L~~Ei--------------------~v~Etv~Dv~~LHneq~~AVA- 188 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHL-LLGGRKGHLAAFDWVTKKLHFEI--------------------NVMETVRDVTFLHNEQFFAVA- 188 (545)
T ss_pred CCeeeeecCCccEE-EecCCccceeeeecccceeeeee--------------------ehhhhhhhhhhhcchHHHHhh-
Confidence 56789999999965 56788999999999998866431 134568999999999999998
Q ss_pred CCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeec
Q 001160 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 507 (1134)
....+.|||-.+ ..+. .+..| .+|..+.|.|.-- +|++++..|.++--|+.+|+.+..+..-.+.+..++-+|
T Consensus 189 QK~y~yvYD~~G-tElH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 189 QKKYVYVYDNNG-TELH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred hhceEEEecCCC-cEEe---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 555699999765 3344 33333 4689999999876 899999999999999999999999988889999998888
Q ss_pred cCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCcc
Q 001160 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587 (1134)
Q Consensus 508 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 587 (1134)
.+ ..+-+|...|+|.+|.....+.+..+..|.++|.++++.++|+++++.|. |..+.|||++....+.++....
T Consensus 262 ~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~tp~ 335 (545)
T KOG1272|consen 262 YN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRTPH 335 (545)
T ss_pred cc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeecCC
Confidence 76 78889999999999999999999999999999999999999999999986 7789999999888777776622
Q ss_pred CcceEEEEEeCCCCEEEEEeCCCeEEEEEC-CCC--eeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEE
Q 001160 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDM-DNM--NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1134)
Q Consensus 588 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~--~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw 659 (1134)
+...+++|..| +++.|....|.||.= -.+ ..-..+-.|.....|..+.|.|-...|-+|...|.-.+.
T Consensus 336 --~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 336 --PASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred --Ccccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence 56778888665 445555668999942 221 112222223333478999999987788877776655554
No 230
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=3.2e-14 Score=156.99 Aligned_cols=349 Identities=17% Similarity=0.184 Sum_probs=220.9
Q ss_pred CCCCCCc-hhHHHHHHHHHHHHHHhhCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 001160 161 LSFPSFK-SSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGP 239 (1134)
Q Consensus 161 ~~~~~~p-~~rL~~ll~q~~~~Q~~~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 239 (1134)
.+.|-.| +--|..|+-|+++.|+.+|..+.+..+++|||..|+|++++.....|.++...+ -.. ..+
T Consensus 1004 q~~~~~p~~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t~Rl----~~r--------el~ 1071 (1516)
T KOG1832|consen 1004 QMTPANPERLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMTGRL----GTR--------ELQ 1071 (1516)
T ss_pred cCCCcCCCCCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhhhcc----cch--------hhc
Confidence 3344344 335999999999999999999999999999999999999654444444443322 000 000
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCcccccCCChhhhhhhcccCCcceeE
Q 001160 240 FQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVS 319 (1134)
Q Consensus 240 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 319 (1134)
++ |- .+.-...|...+..+.+
T Consensus 1072 -~~------------------------------y~--------------------gV~g~~~dr~~IFSRFr-------- 1092 (1516)
T KOG1832|consen 1072 -SF------------------------------YS--------------------GVHGNRRDRQFIFSRFR-------- 1092 (1516)
T ss_pred -Cc------------------------------cc--------------------ccccCcccchhhHhhcc--------
Confidence 00 00 00000012222222222
Q ss_pred eeCCCCCCccccCccccceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeecccccccc
Q 001160 320 FAGVAHTPNVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMP 398 (1134)
Q Consensus 320 ~s~~g~~~~~~~~~~~~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 398 (1134)
..+++. |....+|++||-+.+ .|+.|+..|.|+++++.+|.....
T Consensus 1093 -------------------~w~~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------- 1138 (1516)
T KOG1832|consen 1093 -------------------SWRSFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------- 1138 (1516)
T ss_pred -------------------cchhhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc--------------
Confidence 233344 667899999999998 678899999999999999987654
Q ss_pred ccccccccCCcCeEEEEEcCCCCEEEEEeCC--CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCC
Q 001160 399 LQNALLNDAAISVNRCVWGPDGLMLGVAFSK--HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1134)
Q Consensus 399 ~~~~~l~~h~~~V~~i~~spdg~~las~~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d 476 (1134)
..+|...|+-+.-|.||..+.+.+.- ....+|++.+. ......+. .-.++.|+..... -+.|..-
T Consensus 1139 -----~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~--r~~gt~~ 1205 (1516)
T KOG1832|consen 1139 -----VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF--RALGTEA 1205 (1516)
T ss_pred -----ccccccccccccccCCcceeeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH--HHhcccc
Confidence 56799999999999999988776543 35789998762 22222322 3467889876553 3334444
Q ss_pred CcEEEEECCCCeeeEEe-cC---CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCC
Q 001160 477 KMIKVWDVVAGRKQYTF-EG---HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD 552 (1134)
Q Consensus 477 ~~i~iwd~~~~~~~~~~-~~---h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 552 (1134)
..+.+||++++..+.++ .+ .+..-++..|+|.. .+++ .|| .+||++..+.+..+.... .-..-.|+|.
T Consensus 1206 d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D--~LIl---ndG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~ 1277 (1516)
T KOG1832|consen 1206 DDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD--TLIL---NDG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPS 1277 (1516)
T ss_pred cceEEEecccCcHHHHhcCcchhhhhhccccccCCCc--ceEe---eCc--eeeeeccHHHHhhhhhhe-ecccccccCC
Confidence 57899999999877663 22 22233666787764 3443 244 469999877666554332 1123369999
Q ss_pred CCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe--CC---------------CeEEEE
Q 001160 553 GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DE---------------FQIKFW 615 (1134)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d---------------g~i~iw 615 (1134)
|..++..+ .|||+++.+.++....-.+ ..+.|+..|+.++..- .| ...+-+
T Consensus 1278 g~eVIINS---------EIwD~RTF~lLh~VP~Ldq---c~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf 1345 (1516)
T KOG1832|consen 1278 GNEVIINS---------EIWDMRTFKLLHSVPSLDQ---CAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTF 1345 (1516)
T ss_pred CceEEeec---------hhhhhHHHHHHhcCccccc---eEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccc
Confidence 99999875 4799999988887765543 4577888888766532 01 123344
Q ss_pred ECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEE
Q 001160 616 DMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1134)
Q Consensus 616 d~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 650 (1134)
+......+.++... ..+..++-++...++++-
T Consensus 1346 ~a~dYs~iaTi~v~---R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1346 DAIDYSDIATIPVD---RCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred cccccccceeeecc---cchhhhhcCCccceEEEE
Confidence 44444555555433 234555555555555443
No 231
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.1e-10 Score=126.64 Aligned_cols=520 Identities=11% Similarity=0.129 Sum_probs=310.5
Q ss_pred EEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC
Q 001160 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1134)
Q Consensus 340 ~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp 418 (1134)
-+++. |.+.|.-+.|+.+.+. |.++..+|.|.||-+-.|..... .+-...++.|.+++|+.
T Consensus 64 NQtLeGH~~sV~vvTWNe~~QK-LTtSDt~GlIiVWmlykgsW~EE-----------------MiNnRnKSvV~SmsWn~ 125 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENNQK-LTTSDTSGLIIVWMLYKGSWCEE-----------------MINNRNKSVVVSMSWNL 125 (1189)
T ss_pred hhhhccCcceEEEEEecccccc-ccccCCCceEEEEeeecccHHHH-----------------HhhCcCccEEEEEEEcC
Confidence 45566 9999999999999884 78888999999999988865432 11233567799999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC-------eeeE
Q 001160 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-------RKQY 491 (1134)
Q Consensus 419 dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~-------~~~~ 491 (1134)
||+.++....||.|.+=.+++...... .+++. -...+.|++|.+ .++.+-.+|.+.++|.+.. .+..
T Consensus 126 dG~kIcIvYeDGavIVGsvdGNRIwgK--eLkg~--~l~hv~ws~D~~--~~Lf~~ange~hlydnqgnF~~Kl~~~c~V 199 (1189)
T KOG2041|consen 126 DGTKICIVYEDGAVIVGSVDGNRIWGK--ELKGQ--LLAHVLWSEDLE--QALFKKANGETHLYDNQGNFERKLEKDCEV 199 (1189)
T ss_pred CCcEEEEEEccCCEEEEeeccceecch--hcchh--eccceeecccHH--HHHhhhcCCcEEEecccccHHHhhhhceEE
Confidence 999999999999999999887654332 23322 245789999999 5677778899999995432 1111
Q ss_pred E----ecCCCCCeEEEEeecc------CCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEee
Q 001160 492 T----FEGHEAPVYSVCPHHK------ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1134)
Q Consensus 492 ~----~~~h~~~v~~i~~~~~------~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1134)
. +......|..+.|... ++...|+.+...|.+.+-.-.+......+... -.+..+.|+++|..|+.||.
T Consensus 200 n~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg-m~~vgakWnh~G~vLAvcG~ 278 (1189)
T KOG2041|consen 200 NGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG-MKIVGAKWNHNGAVLAVCGN 278 (1189)
T ss_pred eeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc-cEeecceecCCCcEEEEccC
Confidence 1 1112223555555321 24478999999999998876666655555433 67889999999999999987
Q ss_pred CCCC----C-CcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcc
Q 001160 562 SKEG----E-SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1134)
Q Consensus 562 ~~~~----~-~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1134)
+.+. + +.|.+|. .-|+.+.+++.... .|++++|-..|-.++.+ .|+.|++=+++..-....+..
T Consensus 279 ~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~-~It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e~-------- 347 (1189)
T KOG2041|consen 279 DSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS-CITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIEE-------- 347 (1189)
T ss_pred cccccCccccceEEEec-cchhheEEEecCCc-eeeeeEEcCCceEEEEE-ecceEEEEeecccceEEEeee--------
Confidence 5432 2 2455554 45788888887766 89999998877666655 578888877764333222221
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCC
Q 001160 637 RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 716 (1134)
Q Consensus 637 ~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1134)
.+.|-..+.- ...-.|.+||..+.++.++.......- .++
T Consensus 348 TvVy~y~~~e----~p~y~i~Fwdtk~nek~vK~V~~~~~~-a~~----------------------------------- 387 (1189)
T KOG2041|consen 348 TVVYVYQKEE----LPQYGIMFWDTKTNEKTVKTVTHFENM-AFY----------------------------------- 387 (1189)
T ss_pred EEEEEEccCC----CcceEEEEEecccChhhhhhhcceeeh-hee-----------------------------------
Confidence 1111111100 112357899998886666554432211 100
Q ss_pred CCCcccCccCCCCcccccccccccccc-cCccceeccCCCCCccceeEeec---CCcc---cccceEEEEEecCCcceEE
Q 001160 717 PPAVSISSLGTIDGSRLVDVKPRVAED-VDKIKSWRIPDISDPSQIKALRL---PDSI---AASKVVRLIYTNSGLSLLA 789 (1134)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~w~~~~~~~~~~~~~~~~---~~~~---~~~~v~~~~~s~~g~~l~~ 789 (1134)
.+--.++... ++.+.-+. +....+....+.+ .+.. .-..|.-.-..-++..++.
T Consensus 388 -----------------~ehCvL~~~~d~~~i~e~s--~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vvi 448 (1189)
T KOG2041|consen 388 -----------------REHCVLINRQDDGVIPEYS--TLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVI 448 (1189)
T ss_pred -----------------cccEEEEeccccCCCcchh--hhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEE
Confidence 0000111111 12222110 0000000000000 0000 1112222233345555555
Q ss_pred eeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEEC
Q 001160 790 LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNM 868 (1134)
Q Consensus 790 ~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~ 868 (1134)
++.+ .+.+|.....+...... +...+ . .+. ..+...|. |+ |+++. .
T Consensus 449 AS~e-~~~iWhy~~pK~~s~l~--------------~~k~r--k------egr-~h~Ddtp~------ga~d~~l~---y 495 (1189)
T KOG2041|consen 449 ASEE-RYFIWHYVLPKFNSVLA--------------GVKIR--K------EGR-FHGDDTPE------GAQDRTLE---Y 495 (1189)
T ss_pred eccc-cEEEEEEeccchhhhhh--------------hhhhc--c------ccc-ccCCCCcc------chhhceee---c
Confidence 5554 57788765433211100 00000 0 000 11111122 22 33221 1
Q ss_pred CCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcE
Q 001160 869 MTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQL 948 (1134)
Q Consensus 869 ~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i 948 (1134)
. ..++.|...+|.+++.|. ++|.++-..|.|+-|.+.+.-...... -...|.+++..-+...+|.-.--|.+
T Consensus 496 s----~kt~~G~~DpICAl~~sd---k~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~ 567 (1189)
T KOG2041|consen 496 S----TKTLLGSKDPICALCISD---KFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVV 567 (1189)
T ss_pred c----ceeeccCCCcceeeeecc---eEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhcee
Confidence 1 356777888999999975 688899999999999998876665544 44568899998888889888888888
Q ss_pred EEEeCC---CcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE-ECCeEEEEeC
Q 001160 949 CMWSID---KWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS 1002 (1134)
Q Consensus 949 ~iWd~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~v~vwd~ 1002 (1134)
.+.|+. ++..+.. +..... ..|..+.|..|+..|.+- ....+.+++-
T Consensus 568 tf~dLd~d~~g~ql~~--~~~~er-----rDVWd~~Wa~dNp~llAlmeKtrmyifrg 618 (1189)
T KOG2041|consen 568 TFQDLDYDFDGDQLKL--IYTSER-----RDVWDYEWAQDNPNLLALMEKTRMYIFRG 618 (1189)
T ss_pred eeeecccccCcceeee--eehhhh-----hhhhhhhhccCCchHHhhhhhceEEEecC
Confidence 888886 2332221 111111 357888888888766663 3445666665
No 232
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=3.3e-12 Score=129.68 Aligned_cols=272 Identities=11% Similarity=0.133 Sum_probs=193.1
Q ss_pred CCCeeEEEEecCCCe-EEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 346 GSNVMSMDFHPQQQT-ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~-llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
...|..++|--|++. ++...+.|..+............. .|+.. .......+|..++.. ...|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~--dg~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA--DGTLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc--CCEEE
Confidence 357888888877763 333333566666666665554332 12221 123345556666553 33677
Q ss_pred EEeCCCeEEEEEcCCCCccc-eeeEEecccCCeeEEEEecCCCcEEEEEEcCC--CcEEEEECCCCeeeEEecC------
Q 001160 425 VAFSKHIVHLYTYNPTGELR-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQYTFEG------ 495 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d--~~i~iwd~~~~~~~~~~~~------ 495 (1134)
+|-.+|.+.+|..+.+..-. ....+.. ..++..|.-++.... .+++|+.. ..+.|||+++.+.+.+-+.
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 78899999999998543111 1112322 346777777777665 67779998 8999999998876654332
Q ss_pred -C--CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc-eeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEE
Q 001160 496 -H--EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1134)
Q Consensus 496 -h--~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1134)
- .-+++++.|.+..+...|++++.-+.+++||.+.++. +..+.....+++++...|++++++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 1 1245667787775568999999999999999997665 4477778889999999999999999864 777999
Q ss_pred EeCCCCeeEEE-ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc
Q 001160 572 WNESEGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1134)
Q Consensus 572 wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1134)
+|.+.++.... +.+..+ .++++..+|.+++++++|-|+.+||+|+.+.+++...-... ..+++.+.+
T Consensus 274 FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~ 341 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRD 341 (412)
T ss_pred ecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecC
Confidence 99999998877 666665 89999999999999999999999999999976665543322 345555544
No 233
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=3e-12 Score=145.97 Aligned_cols=238 Identities=9% Similarity=0.034 Sum_probs=155.2
Q ss_pred CccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEe--CCCcEEEEEccCccccccccceeecccccccccccccc
Q 001160 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (1134)
Q Consensus 327 ~~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 404 (1134)
..+|.+|....+......+...+.+.+|||||+.++++.. .+..|.+|++.+++... +
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l 238 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------V 238 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------c
Confidence 3455555444444444457778999999999996655432 23579999998875432 1
Q ss_pred ccCCcCeEEEEEcCCCCEEEEE-eCCC--eEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcC-CC--c
Q 001160 405 NDAAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DK--M 478 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~-d~--~ 478 (1134)
....+.+...+|||||+.|+.. +.+| .|.+||+++++.. .+..+...+....|+|||+ .|+..+. ++ .
T Consensus 239 ~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~ 312 (429)
T PRK03629 239 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQ 312 (429)
T ss_pred cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCC--EEEEEeCCCCCce
Confidence 1223335578999999998875 3344 5889999887543 3334455678899999999 5554443 34 4
Q ss_pred EEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecC---CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCE
Q 001160 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1134)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1134)
|+++|+.+++. ..+..+........|+|++ .+++..+.+ ..|.+||+.++.... +.. ........|+|||+.
T Consensus 313 Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG--~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~ 387 (429)
T PRK03629 313 VYKVNINGGAP-QRITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTM 387 (429)
T ss_pred EEEEECCCCCe-EEeecCCCCccCEEECCCC--CEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCE
Confidence 55557766654 3443344445667787754 777666543 358889988765443 322 223456789999999
Q ss_pred EEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeC
Q 001160 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1134)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1134)
++..+.++ +...+.++++ +|.....+.++.. .+...+|+|
T Consensus 388 i~~~s~~~-~~~~l~~~~~-~G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 388 VIYSSSQG-MGSVLNLVST-DGRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EEEEEcCC-CceEEEEEEC-CCCCeEECccCCC-CcCCcccCC
Confidence 99887633 2445788887 4666666776554 677788876
No 234
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=2.1e-13 Score=143.26 Aligned_cols=238 Identities=11% Similarity=0.166 Sum_probs=164.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC--CCCE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 422 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp--dg~~ 422 (1134)
|.+-|+|++|+.||. +|++|+.|-.+.|||.-..+.++. +-.||...|.|+.|-| +.+.
T Consensus 49 H~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tnnri 109 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTNNRI 109 (758)
T ss_pred ccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCCCeE
Confidence 899999999999998 899999999999999987666653 3468999999999999 5678
Q ss_pred EEEEeCCCeEEEEEcCCCC-------ccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee-e----
Q 001160 423 LGVAFSKHIVHLYTYNPTG-------ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-Q---- 490 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~-------~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~-~---- 490 (1134)
+++|..|..|+++|+...+ .......+..|...|..++-.|++.. .+-++++||+|+-+|++.... -
T Consensus 110 v~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p~~~ 188 (758)
T KOG1310|consen 110 VLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNPDED 188 (758)
T ss_pred EEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCcccc
Confidence 9999999999999998521 12233355679999999999999965 889999999999999986321 1
Q ss_pred -----EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeE-----ecCCCCcEEEEE-ECCCCCEEEEE
Q 001160 491 -----YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-----YDAPGNWCTMMA-YSADGTRLFSC 559 (1134)
Q Consensus 491 -----~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-----~~~~~~~v~~~~-~s~~~~~l~~~ 559 (1134)
..+...--...++.++|..+ .+|+.|+.|--.++||.+....... .........|+. |+|.+- .
T Consensus 189 ~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl----k 263 (758)
T KOG1310|consen 189 CPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL----K 263 (758)
T ss_pred ccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----c
Confidence 11111223457788888865 7999999999999999642211110 000011111121 122111 0
Q ss_pred eeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEE
Q 001160 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 626 (1134)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 626 (1134)
. .+ +... +.-..++-+.|+|+|..+++.-..-.|+++|+..++....+
T Consensus 264 n----~~----------gn~~-----~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 264 N----SQ----------GNLD-----RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred C----cc----------cccc-----cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 0 00 1000 00013566889999987777555568999999987755544
No 235
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=9.3e-12 Score=143.18 Aligned_cols=222 Identities=11% Similarity=0.038 Sum_probs=152.1
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCc--
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM-- 478 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~-- 478 (1134)
+..|...+.+.+|||||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+.+|+|||+. ++++.+.++.
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~----~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 271 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE----LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTD 271 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----EeecCCCcccCcEECCCCCE-EEEEEecCCCce
Confidence 4567889999999999999998764 468999999887542 34456677889999999995 3445555554
Q ss_pred EEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEec-CC--eEEEEEccCCCceeEecCCCCcEEEEEECCCCCE
Q 001160 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1134)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1134)
|++||+.+++. ..+..+........|+|++ ..++..+. ++ .|.+||+..+... .+......+....|+|||+.
T Consensus 272 Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG--~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ 347 (435)
T PRK05137 272 IYTMDLRSGTT-TRLTDSPAIDTSPSYSPDG--SQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDL 347 (435)
T ss_pred EEEEECCCCce-EEccCCCCccCceeEcCCC--CEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCE
Confidence 78889887765 4566666667778887754 77776653 33 5778887655443 33333455677899999999
Q ss_pred EEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC------CeEEEEECCCCeeEEEEeCC
Q 001160 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE------FQIKFWDMDNMNMLTTVDAD 629 (1134)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~ 629 (1134)
++....+ .+...|.+||+.++.. +.+... . .+....|+|||+.|+..+.+ ..++++|+..+.. ..+...
T Consensus 348 ia~~~~~-~~~~~i~~~d~~~~~~-~~lt~~-~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~ 422 (435)
T PRK05137 348 IAFTKQG-GGQFSIGVMKPDGSGE-RILTSG-F-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTP 422 (435)
T ss_pred EEEEEcC-CCceEEEEEECCCCce-EeccCC-C-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCC
Confidence 9987642 2345789999865543 333321 1 45678899999998775532 3688888876554 344322
Q ss_pred CCCCCcceEEEcc
Q 001160 630 GGLPASPRLRFNK 642 (1134)
Q Consensus 630 ~~~~~v~~~~~s~ 642 (1134)
..+...+|+|
T Consensus 423 ---~~~~~p~Wsp 432 (435)
T PRK05137 423 ---GDASDPAWSP 432 (435)
T ss_pred ---CCccCcccCC
Confidence 1356667776
No 236
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.50 E-value=4.4e-13 Score=140.88 Aligned_cols=154 Identities=19% Similarity=0.295 Sum_probs=117.2
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcccccc-----------ccceeeccccccccccccccccCCcCeEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH-----------KPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i 414 (1134)
+..|+|+.|-|.++.++.++-.+|.+.+||..-.-.... ..+..|.-..... +.....--.+.|..+
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rN--Pv~~w~~~~g~in~f 296 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRN--PVARWHIGEGSINEF 296 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCC--ccceeEeccccccce
Confidence 579999999999887888888899999998632110000 0111111111111 111112234589999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEec
Q 001160 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1134)
Q Consensus 415 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~ 494 (1134)
+|||||++||+.+.||.++|+|..+.+.+. .++.--+...|++|||||+ +|++|++|-.|.||.+..++.+..=+
T Consensus 297 ~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg---~mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARGq 371 (636)
T KOG2394|consen 297 AFSPDGKYLATVSQDGFLRIFDFDTQELLG---VMKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARGQ 371 (636)
T ss_pred eEcCCCceEEEEecCceEEEeeccHHHHHH---HHHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEecc
Confidence 999999999999999999999999876654 3333456799999999999 99999999999999999999999999
Q ss_pred CCCCCeEEEEee
Q 001160 495 GHEAPVYSVCPH 506 (1134)
Q Consensus 495 ~h~~~v~~i~~~ 506 (1134)
+|..+|..++|.
T Consensus 372 GHkSWVs~VaFD 383 (636)
T KOG2394|consen 372 GHKSWVSVVAFD 383 (636)
T ss_pred ccccceeeEeec
Confidence 999999999998
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=8.2e-12 Score=143.37 Aligned_cols=238 Identities=13% Similarity=0.085 Sum_probs=157.3
Q ss_pred CcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCccce
Q 001160 369 GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQ 445 (1134)
Q Consensus 369 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~---dg~i~iwd~~~~~~~~~ 445 (1134)
..|.+||........ +..+...+.+.+|+|||+.|+..+. +..|.+||+.+++..
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-- 241 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-- 241 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--
Confidence 368889986543221 3457778999999999999998864 347999999887542
Q ss_pred eeEEecccCCeeEEEEecCCCcEEEEEEcCCC--cEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEec-CCe
Q 001160 446 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGK 522 (1134)
Q Consensus 446 ~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-d~~ 522 (1134)
.+..+.+...+++|+|||+. ++++.+.++ .|++||+.+++. ..+..+.......+|+|++ ..|+.++. ++.
T Consensus 242 --~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG--~~l~f~sd~~g~ 315 (433)
T PRK04922 242 --LVASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDG--KSIYFTSDRGGR 315 (433)
T ss_pred --EeccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCC--CEEEEEECCCCC
Confidence 23334445568899999995 334445454 699999988875 4455565556678887754 77776653 444
Q ss_pred --EEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCC
Q 001160 523 --IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1134)
Q Consensus 523 --i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 600 (1134)
|.++|+.+++.. .+..........+|+|||++++....+ ++...|.+||+.+++.. .+... . ......|+|||
T Consensus 316 ~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~-~Lt~~-~-~~~~p~~spdG 390 (433)
T PRK04922 316 PQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVR-TLTPG-S-LDESPSFAPNG 390 (433)
T ss_pred ceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeE-ECCCC-C-CCCCceECCCC
Confidence 566666554433 233333445578999999999876532 23457999999887755 33322 1 23457899999
Q ss_pred CEEEEEeC---CCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc
Q 001160 601 NRFLAAGD---EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1134)
Q Consensus 601 ~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1134)
++++..+. .+.|+++++..+ ....+..+. ..+...+|+|
T Consensus 391 ~~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 391 SMVLYATREGGRGVLAAVSTDGR-VRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred CEEEEEEecCCceEEEEEECCCC-ceEEcccCC--CCCCCCccCC
Confidence 98887664 346888888543 444444332 2456667775
No 238
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.49 E-value=1.1e-13 Score=142.69 Aligned_cols=231 Identities=14% Similarity=0.171 Sum_probs=193.4
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe
Q 001160 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1134)
Q Consensus 409 ~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~ 488 (1134)
-.-..+.++.+|++|+.|+..|.+..+|+.++.... ++. -...|.++.|..+.+ ++|.+ ..+.++||| ..|.
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~~AVA-QK~y~yvYD-~~Gt 201 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--FFAVA-QKKYVYVYD-NNGT 201 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--HHHhh-hhceEEEec-CCCc
Confidence 345688999999999999999999999999976544 332 345799999998887 55554 577899999 8899
Q ss_pred eeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCc
Q 001160 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1134)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1134)
.++.++.| ..|..+.|.|.. -+|++++..|.++.-|+.+++.+..+....+.+..++-+|-+..+-.|.. .|+
T Consensus 202 ElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nGt 274 (545)
T KOG1272|consen 202 ELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NGT 274 (545)
T ss_pred EEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cce
Confidence 89888755 568899998876 68888999999999999999999988888889999999998888888764 889
Q ss_pred EEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEE
Q 001160 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1134)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 648 (1134)
|.+|.....+++..+-.|.. +|.++++.++|.++++.|.|..++|||+++...+.++... .+...+++|..|. ||
T Consensus 275 VSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp---~~a~~ls~Sqkgl-LA 349 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP---HPASNLSLSQKGL-LA 349 (545)
T ss_pred EEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeecC---CCccccccccccc-ee
Confidence 99999999999999999988 9999999999999999999999999999998877766542 2467788887763 44
Q ss_pred EEeCCCcEEEEE
Q 001160 649 VTTSDNGIKILA 660 (1134)
Q Consensus 649 ~~~~dg~i~iw~ 660 (1134)
. +....+.||.
T Consensus 350 ~-~~G~~v~iw~ 360 (545)
T KOG1272|consen 350 L-SYGDHVQIWK 360 (545)
T ss_pred e-ecCCeeeeeh
Confidence 3 3444889995
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=3.6e-12 Score=145.67 Aligned_cols=239 Identities=15% Similarity=0.148 Sum_probs=151.1
Q ss_pred CCccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCC--CcEEEEEccCccccccccceeeccccccccccccc
Q 001160 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403 (1134)
Q Consensus 326 ~~~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1134)
...+|..|...........+...+.+.+|||||+.++++...+ ..|.+||+.+++...
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-------------------- 234 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-------------------- 234 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------
Confidence 3455666654444444456788999999999998655544333 369999999886432
Q ss_pred cccCCcCeEEEEEcCCCCEEEE-EeCCCeEEEEEc--CCCCccceeeEEecccCCeeEEEEecCCCcEEEE-EEcCCCcE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGV-AFSKHIVHLYTY--NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV-TCGDDKMI 479 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las-~~~dg~i~iwd~--~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~-sg~~d~~i 479 (1134)
+....+.+.+.+|||||+.|+. .+.+|...||.+ .++. .+ .+..+........|+|||+. |+ ++..++..
T Consensus 235 l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~--l~f~s~~~g~~ 308 (427)
T PRK02889 235 VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS--IYFTSDRGGAP 308 (427)
T ss_pred eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE--EEEEecCCCCc
Confidence 2223345678999999998875 566777666654 4433 22 34445556677899999994 44 34345555
Q ss_pred EEEEC--CCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCC---eEEEEEccCCCceeEecCCCCcEEEEEECCCCC
Q 001160 480 KVWDV--VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1134)
Q Consensus 480 ~iwd~--~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1134)
.||.+ .+++.. .+..+........|+|+ |++++..+.++ .|.+||+.+++...... ........|+|||+
T Consensus 309 ~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpD--G~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~ 383 (427)
T PRK02889 309 QIYRMPASGGAAQ-RVTFTGSYNTSPRISPD--GKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGR 383 (427)
T ss_pred EEEEEECCCCceE-EEecCCCCcCceEECCC--CCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCC
Confidence 66654 445432 22222233445677764 47887776554 69999998776543322 23346789999999
Q ss_pred EEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeC
Q 001160 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1134)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1134)
.|+..+..+ +...+++.+. ++.....+..+.. .+...+|+|
T Consensus 384 ~l~~~~~~~-g~~~l~~~~~-~g~~~~~l~~~~g-~~~~p~wsp 424 (427)
T PRK02889 384 YILYATQQG-GRSVLAAVSS-DGRIKQRLSVQGG-DVREPSWGP 424 (427)
T ss_pred EEEEEEecC-CCEEEEEEEC-CCCceEEeecCCC-CCCCCccCC
Confidence 999877533 3455777776 4555555554433 566667776
No 240
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=4.6e-12 Score=145.45 Aligned_cols=237 Identities=12% Similarity=0.109 Sum_probs=153.5
Q ss_pred ccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeC--CCcEEEEEccCccccccccceeeccccccccccccccc
Q 001160 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1134)
Q Consensus 328 ~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 405 (1134)
.++.+|....+......+...+.+.+|||||+.++.+... +..|.+||+.+++... +.
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~ 244 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VA 244 (433)
T ss_pred EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------ec
Confidence 3555555444444445577889999999999965554322 2469999998876432 22
Q ss_pred cCCcCeEEEEEcCCCCEEEEE-eCCC--eEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEc-CCCc--E
Q 001160 406 DAAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKM--I 479 (1134)
Q Consensus 406 ~h~~~V~~i~~spdg~~las~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~-~d~~--i 479 (1134)
...+...+.+|||||+.|+.. +.+| .|.+||+.+++.. .+..+.......+|+|||+ .|+..+ .++. |
T Consensus 245 ~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~i 318 (433)
T PRK04922 245 SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQI 318 (433)
T ss_pred cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCC--EEEEEECCCCCceE
Confidence 234455688999999988654 4444 6999999887532 3445555567889999999 455444 4444 7
Q ss_pred EEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCC---eEEEEEccCCCceeEecCCCCcEEEEEECCCCCEE
Q 001160 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1134)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1134)
+++|+.+++... +..+.......+|+|++ ++++..+.++ .|.+||+.+++.. .+. +........|+|||+++
T Consensus 319 y~~dl~~g~~~~-lt~~g~~~~~~~~SpDG--~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i 393 (433)
T PRK04922 319 YRVAASGGSAER-LTFQGNYNARASVSPDG--KKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMV 393 (433)
T ss_pred EEEECCCCCeEE-eecCCCCccCEEECCCC--CEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEE
Confidence 777877766432 32233344567887754 7777655433 6999999876654 332 22244567999999999
Q ss_pred EEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeC
Q 001160 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1134)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1134)
+..+.. .+...|++++.. +.....+..+.. .+...+|+|
T Consensus 394 ~~~s~~-~g~~~L~~~~~~-g~~~~~l~~~~g-~~~~p~wsp 432 (433)
T PRK04922 394 LYATRE-GGRGVLAAVSTD-GRVRQRLVSADG-EVREPAWSP 432 (433)
T ss_pred EEEEec-CCceEEEEEECC-CCceEEcccCCC-CCCCCccCC
Confidence 877653 345678889885 444555544333 455666765
No 241
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1.4e-11 Score=130.27 Aligned_cols=316 Identities=11% Similarity=0.173 Sum_probs=212.5
Q ss_pred eeEeeCCCCCCccc------cCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeC-----------CCcEEEEEccCc
Q 001160 317 EVSFAGVAHTPNVY------SQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN-----------VGDISLWEVGSR 379 (1134)
Q Consensus 317 ~v~~s~~g~~~~~~------~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~-----------dg~i~iwd~~~~ 379 (1134)
-|.|||-|.++..+ .|.+.....++.+-|. .|.-+.|||..++ |++-+. ...++|||+.+|
T Consensus 215 yv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkY-LVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHP-GVQFIDFSPNEKY-LVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred eEEecCCceEEEEEeccceeeecCccHHHHHhccCC-CceeeecCCccce-EEEecCCccccCcccCCCceEEEEEcccc
Confidence 37888888776554 4555666677777787 6999999999984 555432 147999999999
Q ss_pred cccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEE
Q 001160 380 ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDI 459 (1134)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l 459 (1134)
...+...+ +.+....-.-+.||.|++++|--..+ .|.||+..+-..+... .+ .-..|...
T Consensus 293 ~lkrsF~~----------------~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~K-sl--ki~gIr~F 352 (698)
T KOG2314|consen 293 LLKRSFPV----------------IKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKK-SL--KISGIRDF 352 (698)
T ss_pred chhcceec----------------cCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeeccc-cc--CCccccCc
Confidence 88764221 11222223457899999999987665 5999998764433211 11 24568899
Q ss_pred EEecCCCcEEEEEEcC-----CCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEe----------cCCeEE
Q 001160 460 AFAHPNKQLCIVTCGD-----DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA----------IDGKIK 524 (1134)
Q Consensus 460 ~~s~d~~~~~l~sg~~-----d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~----------~d~~i~ 524 (1134)
.|+|.+. +||--.. -..+.+-.+.+++.+++-.-|. |..+.++...+|.+|+.-- .-..+.
T Consensus 353 swsP~~~--llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~e 428 (698)
T KOG2314|consen 353 SWSPTSN--LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLE 428 (698)
T ss_pred ccCCCcc--eEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEeeEE
Confidence 9999988 6665432 2367777777877777654443 5555666666777776532 222355
Q ss_pred EEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC-C---eeEEEecCccCcceEEEEEeCCC
Q 001160 525 AWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-G---AIKRTYSGFRKRSLGVVQFDTTR 600 (1134)
Q Consensus 525 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~---~~~~~~~~~~~~~v~~~~~~~~~ 600 (1134)
|+.++........-.-...|...+|-|.|+.+++.+.. +...++.+|.+++ . +++..+.. ...+.+.|+|.|
T Consensus 429 IfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~-~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPkG 504 (698)
T KOG2314|consen 429 IFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN-TVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPKG 504 (698)
T ss_pred EEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcc-ccccceeEEEeecCCCchhhhhhhcc---cccceEEEcCCC
Confidence 66666555544444445578899999999998866532 3466788888773 2 23334433 257789999999
Q ss_pred CEEEEE---eCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC------CCcEEEEECCCc
Q 001160 601 NRFLAA---GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILANSDG 664 (1134)
Q Consensus 601 ~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~------dg~i~iw~~~~~ 664 (1134)
++++.+ |..|.+.++|........+- ...| ...+.+.|.|.|++++++++ |..-++|+....
T Consensus 505 ~fvvva~l~s~~g~l~F~D~~~a~~k~~~-~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 505 RFVVVAALVSRRGDLEFYDTDYADLKDTA-SPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred cEEEEEEecccccceEEEecchhhhhhcc-Cccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 998875 46789999999853322221 1122 24578999999999999876 566788888655
No 242
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=7.9e-11 Score=125.52 Aligned_cols=282 Identities=9% Similarity=0.104 Sum_probs=186.1
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
..+.+..++|++|+ ++|.+ .++.+.|++..++..+.+ -....+.++.|||-|.+|.+
T Consensus 34 ~~~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T 90 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLT 90 (566)
T ss_pred CCcceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEE---------------------eccceeeeeeeccccccccc
Confidence 34578899999998 66655 478999999988753322 11226899999999999987
Q ss_pred E-----eC-----CCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecC
Q 001160 426 A-----FS-----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1134)
Q Consensus 426 ~-----~~-----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 495 (1134)
- .. .-.+.+|++.++.... .+..-...-++..|+.|.. ++.--..+.+++|++..-+.+. -+-
T Consensus 91 ~e~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl 163 (566)
T KOG2315|consen 91 WEPWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKL 163 (566)
T ss_pred ccccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCcccee-eee
Confidence 3 11 2347799999843322 2222222227899999986 3433445689999987643322 123
Q ss_pred CCCCeEEEEeeccCCccEEEE-----EecCCeEEEEEccCCCceeEe---cCCCCcEEEEEECCCCCEEE-EEeeC--C-
Q 001160 496 HEAPVYSVCPHHKESIQFIFS-----TAIDGKIKAWLYDYLGSRVDY---DAPGNWCTMMAYSADGTRLF-SCGTS--K- 563 (1134)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s-----~~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~-~~~~~--~- 563 (1134)
|...|+.+.++|.+.-..+++ .+.-..+++|.+......... ......-..+.|++-|.-|+ .++.+ +
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 677899999988754445554 355667999977622211111 11122334677888777544 33322 1
Q ss_pred ----CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEE--EeCCCeEEEEECCCCeeEEEEeCCCCCCCcce
Q 001160 564 ----EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA--AGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (1134)
Q Consensus 564 ----~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1134)
.++..++++++........+ ...++|.++.|+|+++.+++ |-.--.+.|||++ +.++..+.. .+-++
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~V~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e----gpRN~ 316 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVSVPL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE----GPRNT 316 (566)
T ss_pred CccccccceEEEEEecCceEEEec--CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC----CCccc
Confidence 24567889988844443333 33449999999999987766 4577889999986 455555432 24578
Q ss_pred EEEccCCCEEEEEeC---CCcEEEEECCCc
Q 001160 638 LRFNKEGSLLAVTTS---DNGIKILANSDG 664 (1134)
Q Consensus 638 ~~~s~d~~~l~~~~~---dg~i~iw~~~~~ 664 (1134)
+-|+|.|++++.++- .|.|.|||+.+.
T Consensus 317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNR 346 (566)
T ss_pred eEECCCCCEEEEeecCCCCCceEEEeccch
Confidence 999999999998876 478999999875
No 243
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=5.7e-11 Score=126.62 Aligned_cols=331 Identities=14% Similarity=0.156 Sum_probs=205.2
Q ss_pred CCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe-----C-----CC
Q 001160 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-----D-----EF 610 (1134)
Q Consensus 541 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~-----dg 610 (1134)
.......+++++|++++.+. +..+.|++..++..+.+.... .+..+.|+|.|+++.+-- . .-
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~p 105 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWEPWAIYGPKNASNP 105 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEeccc---eeeeeeecccccccccccccccccCCCCCCC
Confidence 33567889999999999885 556999999888654444433 477899999999887621 2 23
Q ss_pred eEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCC
Q 001160 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 690 (1134)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1134)
.+.+|+++++.....+...... -++..|+.|..+.+- -..+.+.+|++.+-......+....
T Consensus 106 n~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~kl~~~~--------------- 167 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQHKLSVSG--------------- 167 (566)
T ss_pred ceeeeeeccceehhheehhhhc--Ccccccccchhhhhh-hhcceEEEEecCCccceeeeeeccc---------------
Confidence 4779999996666666544322 268899998765443 2355899999876432222222111
Q ss_pred ccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCC--ccceeEeecCC
Q 001160 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISD--PSQIKALRLPD 768 (1134)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~--~~~~~~~~~~~ 768 (1134)
...+.++|.++.... +.+.| -.-|.-..+++|.+..... ....+.+.
T Consensus 168 ------------i~~f~lSpgp~~~~v------------AvyvP----e~kGaPa~vri~~~~~~~~~~~~a~ksFF--- 216 (566)
T KOG2315|consen 168 ------------ITMLSLSPGPEPPFV------------AVYVP----EKKGAPASVRIYKYPEEGQHQPVANKSFF--- 216 (566)
T ss_pred ------------eeeEEecCCCCCceE------------EEEcc----CCCCCCcEEEEeccccccccchhhhcccc---
Confidence 012233333211000 00000 0001225678887763211 11122211
Q ss_pred cccccceEEEEEecCCcceEEeec---cCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEE
Q 001160 769 SIAASKVVRLIYTNSGLSLLALAS---NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 845 (1134)
Q Consensus 769 ~~~~~~v~~~~~s~~g~~l~~~~~---dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~ 845 (1134)
...=..+.|++-|.-|+.... |.+ ....-+..++.+.+.. |......+.. .++|.+
T Consensus 217 ---kadkvqm~WN~~gt~LLvLastdVDkt-------------n~SYYGEq~Lyll~t~-g~s~~V~L~k----~GPVhd 275 (566)
T KOG2315|consen 217 ---KADKVQMKWNKLGTALLVLASTDVDKT-------------NASYYGEQTLYLLATQ-GESVSVPLLK----EGPVHD 275 (566)
T ss_pred ---ccceeEEEeccCCceEEEEEEEeecCC-------------CccccccceEEEEEec-CceEEEecCC----CCCceE
Confidence 112235667776665443322 210 0001111112222223 3333334554 889999
Q ss_pred EEeccCCCEEEEEe---CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCC---CcEEEEEcCCceEEEE
Q 001160 846 IALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---SSVQIYNVRVDEVKTK 919 (1134)
Q Consensus 846 ~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d---g~i~iwd~~~~~~~~~ 919 (1134)
+.|+++|+-++++. -.++.|||++ +..+..+. .++-+++-|+| .|++|+.++-+ |.+.|||+.+.+++..
T Consensus 276 v~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~ 351 (566)
T KOG2315|consen 276 VTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAK 351 (566)
T ss_pred EEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccc
Confidence 99999999888775 5789999986 56666664 67788999999 88988888755 8999999999998888
Q ss_pred ecCcccceEEEEEecCCCEEEEEcC------CCcEEEEeCCC
Q 001160 920 LKGHQNRITGLAFSPTLNALVSSGA------DAQLCMWSIDK 955 (1134)
Q Consensus 920 l~~h~~~i~~l~~s~d~~~l~s~~~------D~~i~iWd~~~ 955 (1134)
+..-.. +-..|+|||.+++|+.. |+.++||++..
T Consensus 352 ~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 352 FKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred cccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 875443 45799999999998873 67899999976
No 244
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.45 E-value=8.1e-12 Score=124.47 Aligned_cols=344 Identities=13% Similarity=0.239 Sum_probs=217.1
Q ss_pred eEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECC-CCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEE
Q 001160 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD-NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1134)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 657 (1134)
.++.++|+.+ .++....-|..+-+++.++|.++++|--. .++.-..+.. ....++.++.+.++...|++|-..|++.
T Consensus 16 ll~~~eG~~d-~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 16 LLSKIEGSQD-DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhcCchh-hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeeeccceEEEEEEecceEE
Confidence 4566778777 77777777888889999999999999543 4444444332 2234678999999999999999999988
Q ss_pred EEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccc
Q 001160 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVK 737 (1134)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1134)
-+.+..........+.
T Consensus 94 efs~sedfnkm~~~r~---------------------------------------------------------------- 109 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKD---------------------------------------------------------------- 109 (404)
T ss_pred EEEhhhhhhhcchhhh----------------------------------------------------------------
Confidence 8776533111111000
Q ss_pred cccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccC
Q 001160 738 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVA 817 (1134)
Q Consensus 738 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~ 817 (1134)
| ..|...+..+.|+-.-..+++.+.|..+. |...
T Consensus 110 ------------~------------------~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~--------------- 143 (404)
T KOG1409|consen 110 ------------Y------------------LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCT--------------- 143 (404)
T ss_pred ------------h------------------hhhhcceeeEEecCCceeEEEeccccceE-EEee---------------
Confidence 0 12677788888888888888888886654 3221
Q ss_pred cccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEEC--CCCeEEEEecCCCCceEEEEEcCCCC
Q 001160 818 PQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNM--MTFKVMTMFMSPPPAATFLAFHPQDN 894 (1134)
Q Consensus 818 ~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~--~~~~~~~~~~~~~~~i~~l~~s~~~~ 894 (1134)
+.+..+.... - ....+++.+.- .+...|. .|.|..-.+ ....++.++.+|.+.+++++|.+ ..
T Consensus 144 ------e~~~~lg~Y~----~-~~~~t~~~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~ 209 (404)
T KOG1409|consen 144 ------ESGNRLGGYN----F-ETPASALQFDA--LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQ 209 (404)
T ss_pred ------ccCCcccceE----e-eccCCCCceee--EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CC
Confidence 1111110000 0 01111111111 1333444 455444433 34677889999999999999999 89
Q ss_pred cEEEEEeCCCcEEEEEcCCce-EEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCC-----
Q 001160 895 NIIAIGMEDSSVQIYNVRVDE-VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA----- 968 (1134)
Q Consensus 895 ~~lasg~~dg~i~iwd~~~~~-~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~----- 968 (1134)
++|.+|..|..+.+||+...+ ....+.+|.+.|..+..-+--+.|.+++.||.|.+|+++.........+..-.
T Consensus 210 ~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~ 289 (404)
T KOG1409|consen 210 RLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCN 289 (404)
T ss_pred cEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhC
Confidence 999999999999999997654 34568899999999999888899999999999999999865432221111100
Q ss_pred -------------------CCC--CCCcCceEEEECCCCcEEEEEECCeEEEEeCCCccee-----ccCCCCCCCCCeEE
Q 001160 969 -------------------GRQ--SPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSR-----SWSPKDALPAPISS 1022 (1134)
Q Consensus 969 -------------------~~~--~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~-----~~~~~~~h~~~v~~ 1022 (1134)
-|. .....+...+-+....+...+..-.+++-|.-...+. .+...+.-...|+.
T Consensus 290 qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgIta 369 (404)
T KOG1409|consen 290 QPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITA 369 (404)
T ss_pred chHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeE
Confidence 000 0001122222222222222344445565554111111 11112211357999
Q ss_pred EEEccCCCEEEEEecCCcEEEEeCCC
Q 001160 1023 AIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 1023 v~~s~dg~~l~~~~~dg~I~vwd~~~ 1048 (1134)
|.+..+-.+|+|++.|..|+|||+..
T Consensus 370 mhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 370 MHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred EEhhhhccceeecCCceEEEEEechh
Confidence 99988888999999999999999874
No 245
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1.4e-11 Score=140.78 Aligned_cols=223 Identities=13% Similarity=0.094 Sum_probs=145.4
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEE
Q 001160 405 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~i 481 (1134)
..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++.. .+....+.+.+.+|+|||+. ++++.+.++...|
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~----~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~I 266 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR----VVANFKGSNSAPAWSPDGRT-LAVALSRDGNSQI 266 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEEccCCCceE
Confidence 3567789999999999999987643 46999999987643 23334455678999999994 3346677777666
Q ss_pred EE--CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEec-CCeEEEEEccCC-CceeEecCCCCcEEEEEECCCCCEEE
Q 001160 482 WD--VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLF 557 (1134)
Q Consensus 482 wd--~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1134)
|. +..+. ...+..+.+......|+|++ ..|+..+. ++...+|.++.. .....+..........+|+|||++++
T Consensus 267 y~~d~~~~~-~~~lt~~~~~~~~~~wSpDG--~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 267 YTVNADGSG-LRRLTQSSGIDTEPFFSPDG--RSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred EEEECCCCC-cEECCCCCCCCcCeEEcCCC--CEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 65 44444 45666566666777887754 77665554 566777765432 22222222333445678999999999
Q ss_pred EEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCC---eEEEEECCCCeeEEEEeCCCCCCC
Q 001160 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF---QIKFWDMDNMNMLTTVDADGGLPA 634 (1134)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1134)
..+.. .+...|.+||+.+++....... . ......|+|||+.|+.++.++ .+++.++ ++.....+..+.+ .
T Consensus 344 ~~s~~-~g~~~I~v~d~~~g~~~~lt~~-~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g--~ 416 (427)
T PRK02889 344 YISRV-GGAFKLYVQDLATGQVTALTDT-T--RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG--D 416 (427)
T ss_pred EEEcc-CCcEEEEEEECCCCCeEEccCC-C--CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--C
Confidence 76642 2234799999988875433222 1 235678999999988876443 3556666 4555555543322 4
Q ss_pred cceEEEcc
Q 001160 635 SPRLRFNK 642 (1134)
Q Consensus 635 v~~~~~s~ 642 (1134)
+...+|+|
T Consensus 417 ~~~p~wsp 424 (427)
T PRK02889 417 VREPSWGP 424 (427)
T ss_pred CCCCccCC
Confidence 56677776
No 246
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.45 E-value=5.7e-10 Score=123.76 Aligned_cols=212 Identities=18% Similarity=0.215 Sum_probs=136.1
Q ss_pred CceEEEEeccCCCEEEEEe--CCeEEEEECCC-CeEEEE---ec----------CCCCceEEEEEcCCCCcEEEEEeC-C
Q 001160 841 ESAACIALSKNDSYVMSAS--GGKVSLFNMMT-FKVMTM---FM----------SPPPAATFLAFHPQDNNIIAIGME-D 903 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~-~~~~~~---~~----------~~~~~i~~l~~s~~~~~~lasg~~-d 903 (1134)
.....++++|++++|+++. +|.|.++++.. +..... +. .......++.|+| +++++++... .
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~ 165 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGA 165 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTT
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCC
Confidence 3455688999999999886 78999999976 433322 21 1234578999999 8887776543 3
Q ss_pred CcEEEEEcCCce--EE--EEec-CcccceEEEEEecCCCEEEEE-cCCCcEEEEeCC--CcccccceeeecCCCCCCCCc
Q 001160 904 SSVQIYNVRVDE--VK--TKLK-GHQNRITGLAFSPTLNALVSS-GADAQLCMWSID--KWEKLKSRFIQAPAGRQSPLV 975 (1134)
Q Consensus 904 g~i~iwd~~~~~--~~--~~l~-~h~~~i~~l~~s~d~~~l~s~-~~D~~i~iWd~~--~~~~~~~~~~~~~~~~~~~~~ 975 (1134)
..|++|++.... +. ..+. .....-..++|+||++++... -.+++|.++++. ++.......+...........
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~ 245 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN 245 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccC
Confidence 489999997654 32 2222 234457899999999987655 467889999998 443222222222211111112
Q ss_pred CceEEEECCCCcEEEEEE--CCeEEEEeC--CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEEeC--CC
Q 001160 976 GETKVQFHNDQTHLLVVH--ESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC-DGAIGVFDA--ET 1048 (1134)
Q Consensus 976 ~v~~~~fspdg~~l~~~~--d~~v~vwd~--~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~-dg~I~vwd~--~~ 1048 (1134)
....++++|||++|.++. .+.|.+|++ ....+...............++++|||++|+++.. ++.|.+|++ .+
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 578999999999999964 578999998 22233322221111345789999999999988874 568999876 56
Q ss_pred cceee
Q 001160 1049 LRFRC 1053 (1134)
Q Consensus 1049 ~~~~~ 1053 (1134)
|.+..
T Consensus 326 G~l~~ 330 (345)
T PF10282_consen 326 GKLTP 330 (345)
T ss_dssp TEEEE
T ss_pred CcEEE
Confidence 66543
No 247
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.44 E-value=4.4e-11 Score=119.17 Aligned_cols=190 Identities=15% Similarity=0.281 Sum_probs=124.5
Q ss_pred cCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe-----eeEEecCCC------------CCeEEEEeeccCCccEEE
Q 001160 453 VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-----KQYTFEGHE------------APVYSVCPHHKESIQFIF 515 (1134)
Q Consensus 453 ~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~-----~~~~~~~h~------------~~v~~i~~~~~~~~~~l~ 515 (1134)
..-|.++.|...|. +|+||..+|.|.++.-.... ....++.|. ..|..+.|....+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 45689999999999 89999999999999743322 122344454 357888999888888999
Q ss_pred EEecCCeEEEEEccCCCceeE-----ecCCCCcEEEEEE---CCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCcc
Q 001160 516 STAIDGKIKAWLYDYLGSRVD-----YDAPGNWCTMMAY---SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587 (1134)
Q Consensus 516 s~~~d~~i~~wd~~~~~~~~~-----~~~~~~~v~~~~~---s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 587 (1134)
..+.|++|++|.+........ .......++++.. .+....+. ..+.+.+...+
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve-------------------a~prRv~aNaH 163 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE-------------------ASPRRVYANAH 163 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee-------------------eeeeeeccccc
Confidence 999999999998876544331 1111112222211 11110110 12334444444
Q ss_pred CcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCe-eEEEEeCCCC-----CCCcceEEEcc-CCCEEEEEeCCCcEEEEE
Q 001160 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN-MLTTVDADGG-----LPASPRLRFNK-EGSLLAVTTSDNGIKILA 660 (1134)
Q Consensus 588 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~-----~~~v~~~~~s~-d~~~l~~~~~dg~i~iw~ 660 (1134)
.-.|++++++.|+..++++ +|=.|.+|+++--. .......... ..-|++..|+| .-.+++..++.|+|++-|
T Consensus 164 tyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred eeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 4479999999999988887 56789999987432 2222221111 12378889999 456788888999999999
Q ss_pred CCCc
Q 001160 661 NSDG 664 (1134)
Q Consensus 661 ~~~~ 664 (1134)
++..
T Consensus 243 mR~~ 246 (433)
T KOG1354|consen 243 MRQS 246 (433)
T ss_pred chhh
Confidence 8754
No 248
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=2.8e-11 Score=139.18 Aligned_cols=239 Identities=10% Similarity=0.015 Sum_probs=156.2
Q ss_pred CCccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEe--CCCcEEEEEccCccccccccceeeccccccccccccc
Q 001160 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403 (1134)
Q Consensus 326 ~~~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1134)
...+|.+|...........+...+.+.+|||||+.|+.+.. .+..|.+||+.+++...
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-------------------- 240 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-------------------- 240 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------
Confidence 34566666544444444558889999999999996555443 24689999998876432
Q ss_pred cccCCcCeEEEEEcCCCCEEEEE-eCCC--eEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEc-CC--C
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DD--K 477 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~-~d--~ 477 (1134)
+..+.+.+.+.+|||||+.|+.. +.++ .|.+||+.++... .+..+........|+|||+ .|+..+ .+ .
T Consensus 241 l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~--~i~f~s~~~g~~ 314 (435)
T PRK05137 241 VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGS--QIVFESDRSGSP 314 (435)
T ss_pred eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCC--EEEEEECCCCCC
Confidence 33456677889999999988644 4454 4777788876532 3445666677899999999 455444 33 3
Q ss_pred cEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecC---CeEEEEEccCCCceeEecCCCCcEEEEEECCCCC
Q 001160 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1134)
Q Consensus 478 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1134)
.|++||+.+++. ..+..+.+.+....|+|++ +.|+..+.+ ..|.+||+..... ..+.. ...+....|+|||+
T Consensus 315 ~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG--~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~ 389 (435)
T PRK05137 315 QLYVMNADGSNP-RRISFGGGRYSTPVWSPRG--DLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGR 389 (435)
T ss_pred eEEEEECCCCCe-EEeecCCCcccCeEECCCC--CEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCC
Confidence 688889776654 3444345556677887754 777766543 3688888765443 22322 23567889999999
Q ss_pred EEEEEeeCCCCC--CcEEEEeCCCCeeEEEecCccCcceEEEEEeC
Q 001160 555 RLFSCGTSKEGE--SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1134)
Q Consensus 555 ~l~~~~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1134)
.++..+...... ..++++|+..+.. ..+.. .. .+...+|+|
T Consensus 390 ~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~-~~~~p~Wsp 432 (435)
T PRK05137 390 VIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT-PG-DASDPAWSP 432 (435)
T ss_pred EEEEEEccCCCCCcceEEEEECCCCce-EEccC-CC-CccCcccCC
Confidence 998766432221 4688888876544 34432 21 345566665
No 249
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.42 E-value=1.5e-07 Score=115.49 Aligned_cols=519 Identities=13% Similarity=0.166 Sum_probs=287.3
Q ss_pred cCeEEEEEcCCCCEEEEEeC--CC--eEEEEEcCCCCccceeeEEe-----cccCCeeEEEEecCCCcEEEEEEcCCCcE
Q 001160 409 ISVNRCVWGPDGLMLGVAFS--KH--IVHLYTYNPTGELRQHLEID-----AHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1134)
Q Consensus 409 ~~V~~i~~spdg~~las~~~--dg--~i~iwd~~~~~~~~~~~~~~-----~h~~~v~~l~~s~d~~~~~l~sg~~d~~i 479 (1134)
..+...+|.+....+.++.. .. .|.+..............+. ...+.|.++.|.++.. .++.+..+|.|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceE
Confidence 35777777776654443322 22 34444433332222222332 2346799999999998 57777788999
Q ss_pred EEE----ECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcc------------C-C----------C
Q 001160 480 KVW----DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD------------Y-L----------G 532 (1134)
Q Consensus 480 ~iw----d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~------------~-~----------~ 532 (1134)
.+. |..+... ...-.-+..|.+++|+|+. ..|+..+.++++.+-.-+ . + +
T Consensus 100 ~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~--Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGk 176 (928)
T PF04762_consen 100 ILVREDPDPDEDEI-EIVGSVDSGILAASWSPDE--ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGK 176 (928)
T ss_pred EEEEccCCCCCcee-EEEEEEcCcEEEEEECCCc--CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCc
Confidence 998 5444332 1222346789999999976 788888888888775321 0 0 0
Q ss_pred ceeEecC------------------------CCCcEEEEEECCCCCEEEEEeeCCC-C-CCcEEEEeCCCCeeEEEecCc
Q 001160 533 SRVDYDA------------------------PGNWCTMMAYSADGTRLFSCGTSKE-G-ESHLVEWNESEGAIKRTYSGF 586 (1134)
Q Consensus 533 ~~~~~~~------------------------~~~~v~~~~~s~~~~~l~~~~~~~~-~-~~~i~~wd~~~~~~~~~~~~~ 586 (1134)
....+.+ ....-..++|-.||.++++.+.+.. + ...+++|+-+ |.+..+...
T Consensus 177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~- 254 (928)
T PF04762_consen 177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP- 254 (928)
T ss_pred ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc-
Confidence 0000000 1224467899999999998876333 2 4789999965 665544442
Q ss_pred cCcceEEEEEeCCCCEEEEEeC---CCeEEEEECCCCeeEEEEeCC--CCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 587 RKRSLGVVQFDTTRNRFLAAGD---EFQIKFWDMDNMNMLTTVDAD--GGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 587 ~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
..+--.+++|-|.|+.+++... ...|.+|.-+ |-.-..+... .....|..+.|++|+..||....|. |.+|-.
T Consensus 255 v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~ 332 (928)
T PF04762_consen 255 VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTR 332 (928)
T ss_pred CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEe
Confidence 2224456899999999998653 4567777643 3333333332 2334789999999999999987664 999987
Q ss_pred CCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccc
Q 001160 662 SDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVA 741 (1134)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1134)
.+- .. .++.
T Consensus 333 ~NY-HW--YLKq-------------------------------------------------------------------- 341 (928)
T PF04762_consen 333 SNY-HW--YLKQ-------------------------------------------------------------------- 341 (928)
T ss_pred eCC-EE--EEEE--------------------------------------------------------------------
Confidence 654 11 0000
Q ss_pred cccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCC-cceEEeeccCeeEEeecccccCCCCCCcccccCccc
Q 001160 742 EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSG-LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQL 820 (1134)
Q Consensus 742 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 820 (1134)
.+.++ ....+..+.|+|.. ..|...+.+|.+..+++.
T Consensus 342 ---------------------ei~~~---~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~------------------ 379 (928)
T PF04762_consen 342 ---------------------EIRFS---SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA------------------ 379 (928)
T ss_pred ---------------------EEEcc---CCCCCCceEECCCCCCEEEEEecCCcEEEEEEE------------------
Confidence 00000 01112225555532 335555555666665542
Q ss_pred ccCCCCCccccccCCCCCCCCceEEEEecc-CCCEEEEEeCCeEEEEECCCCeE-----EEEecCCCCceEEEEEcCCCC
Q 001160 821 WQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMSASGGKVSLFNMMTFKV-----MTMFMSPPPAATFLAFHPQDN 894 (1134)
Q Consensus 821 w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~-dg~~la~~sdg~i~vwd~~~~~~-----~~~~~~~~~~i~~l~~s~~~~ 894 (1134)
|+...+.. .+| |...+++.++.++.+-.+..... ...+. -...|.+++|++ ++
T Consensus 380 ~~v~~s~~-------------------~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~~ 438 (928)
T PF04762_consen 380 WDVSRSPG-------------------SSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-SN 438 (928)
T ss_pred EEEEecCC-------------------CCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-CC
Confidence 11111100 111 33345555556677777664321 12232 356899999999 67
Q ss_pred cEEEEEeCCCcEEEEEcCCceEE--------EEec----------CcccceEEEEEecCCCEEEEEcCC---CcEEEEeC
Q 001160 895 NIIAIGMEDSSVQIYNVRVDEVK--------TKLK----------GHQNRITGLAFSPTLNALVSSGAD---AQLCMWSI 953 (1134)
Q Consensus 895 ~~lasg~~dg~i~iwd~~~~~~~--------~~l~----------~h~~~i~~l~~s~d~~~l~s~~~D---~~i~iWd~ 953 (1134)
..+|+-..||.|.+|........ ..+. .-...+..++|..+...++....+ ..+.++++
T Consensus 439 ~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 518 (928)
T PF04762_consen 439 SRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDI 518 (928)
T ss_pred CeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEe
Confidence 77888999999999985443211 1111 123457889998887776666554 56888887
Q ss_pred CCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCC--
Q 001160 954 DKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGL-- 1030 (1134)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-- 1030 (1134)
...+... ......... ..+..+...++...++. ..+|.+..++..+.......... .-+-..++...+..
T Consensus 519 ~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~--~c~~~~~~~~~~~~~~ 591 (928)
T PF04762_consen 519 DDSENSA--SVESSTEVD---GVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ--PCPWMEVCQINGSEDK 591 (928)
T ss_pred ccCCCce--eEEEEeccC---ceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCC--CCcEEEEEEECCccce
Confidence 4433211 111111111 23444445555553444 67888887766333222111110 11222232223322
Q ss_pred -EEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecC
Q 001160 1031 -LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1031 -~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
.++.-+..|.+++ ++..++ ..+++.+.+. .+|+-......+++.++.
T Consensus 592 ~~~~GLs~~~~Ly~----n~~~la----------------~~~tSF~v~~---~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 592 RVLFGLSSNGRLYA----NSRLLA----------------SNCTSFAVTD---SFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred eEEEEECCCCEEEE----CCEEEe----------------cCCceEEEEc---CEEEEEecCceEEEEECc
Confidence 3333333444443 233332 2223444433 567766777889999988
No 250
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=7.5e-10 Score=112.73 Aligned_cols=257 Identities=13% Similarity=0.171 Sum_probs=174.5
Q ss_pred CCceEEEEeccCCCEEEEEe----CCeEEEEECCC--CeEEE--EecCCCCceEEEEEcCCCCcEEEEEeC-CCcEEEEE
Q 001160 840 EESAACIALSKNDSYVMSAS----GGKVSLFNMMT--FKVMT--MFMSPPPAATFLAFHPQDNNIIAIGME-DSSVQIYN 910 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s----dg~i~vwd~~~--~~~~~--~~~~~~~~i~~l~~s~~~~~~lasg~~-dg~i~iwd 910 (1134)
....+-++++|++++|.++. +|.|..|.++. |++.. .......+-+.+++++ ++++|+++.. -|.|.++-
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEEE
Confidence 67788999999999998885 36788888875 44322 2222223348899999 8999988875 48999999
Q ss_pred cCC-ceEEE--EecCcccc----------eEEEEEecCCCEEEEEc--CCCcEEEEeCCCcccccceeeecCCCCCCCCc
Q 001160 911 VRV-DEVKT--KLKGHQNR----------ITGLAFSPTLNALVSSG--ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 975 (1134)
Q Consensus 911 ~~~-~~~~~--~l~~h~~~----------i~~l~~s~d~~~l~s~~--~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~ 975 (1134)
+.. |.+.. ....|.+. +-...+.|++++|++.+ .| .|.+|+++.|+........... ..
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~-----G~ 191 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKP-----GA 191 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCC-----CC
Confidence 865 43222 12235544 77888999999999875 45 4999999977754333333322 26
Q ss_pred CceEEEECCCCcEEEEE--ECCeEEEEeCCC--cceeccCCC------CCCCCCeEEEEEccCCCEEEEEec-CCcEEEE
Q 001160 976 GETKVQFHNDQTHLLVV--HESQISVYDSKL--ECSRSWSPK------DALPAPISSAIYSCDGLLVYAGFC-DGAIGVF 1044 (1134)
Q Consensus 976 ~v~~~~fspdg~~l~~~--~d~~v~vwd~~~--~~~~~~~~~------~~h~~~v~~v~~s~dg~~l~~~~~-dg~I~vw 1044 (1134)
+.+.++|+|++++..+. -+++|.+|..+. ..+..+... ..-.....+|.+++||++|.++.. ...|.+|
T Consensus 192 GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 192 GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 78999999999988874 479999999833 333332221 111456778899999999988753 3468888
Q ss_pred eCCCc-ceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCC-cEEEEecCCCccccCCCCC
Q 001160 1045 DAETL-RFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDG-AVHVVEPSDAELKWGGTPS 1111 (1134)
Q Consensus 1045 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg-~v~vW~~~~~~~~~~~~~~ 1111 (1134)
.+... ..+.... .. ..+...|....+.| +|++|++++.|+ .|.++.++...+.+.....
T Consensus 272 ~V~~~~g~L~~~~---~~----~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 272 SVDPDGGKLELVG---IT----PTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred EEcCCCCEEEEEE---Ee----ccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 77643 2222221 11 12335588899999 678888888775 7999988766655554443
No 251
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=3.8e-10 Score=114.88 Aligned_cols=280 Identities=11% Similarity=0.117 Sum_probs=184.3
Q ss_pred cCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeecc---CeeEEeecccccCCCCCCcccccCccc
Q 001160 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN---AVHKLWKWQRTERNPSGKATANVAPQL 820 (1134)
Q Consensus 744 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~ 820 (1134)
++.|.+|++.+....... +.+ .......+-++++|+++.|.++..+ |.|..|.+
T Consensus 15 s~gI~v~~ld~~~g~l~~--~~~--v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i------------------- 71 (346)
T COG2706 15 SQGIYVFNLDTKTGELSL--LQL--VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI------------------- 71 (346)
T ss_pred CCceEEEEEeCcccccch--hhh--ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE-------------------
Confidence 467899988843222111 111 1255677889999999999887664 66666654
Q ss_pred ccCCCCCcccc-ccCCCCCCCCceEEEEeccCCCEEEEEe--CCeEEEEECCC-CeEEEE--ecCCCCc----------e
Q 001160 821 WQPPSGTLMTN-DINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMT-FKVMTM--FMSPPPA----------A 884 (1134)
Q Consensus 821 w~~~~~~~~~~-~~~~~~h~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~-~~~~~~--~~~~~~~----------i 884 (1134)
|..+|++... .... . ..+.+.++++++|++++++. .|.|.++-++. |.+... +..|.+. +
T Consensus 72 -D~~~G~Lt~ln~~~~--~-g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~ 147 (346)
T COG2706 72 -DPDDGRLTFLNRQTL--P-GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHV 147 (346)
T ss_pred -cCCCCeEEEeecccc--C-CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCcc
Confidence 3343432211 0111 1 33348899999999999998 69999999965 433221 2224444 8
Q ss_pred EEEEEcCCCCcEEEEEeC-CCcEEEEEcCCceEEEEec---CcccceEEEEEecCCCEEEEEc-CCCcEEEEeCCCc--c
Q 001160 885 TFLAFHPQDNNIIAIGME-DSSVQIYNVRVDEVKTKLK---GHQNRITGLAFSPTLNALVSSG-ADAQLCMWSIDKW--E 957 (1134)
Q Consensus 885 ~~l~~s~~~~~~lasg~~-dg~i~iwd~~~~~~~~~l~---~h~~~i~~l~~s~d~~~l~s~~-~D~~i~iWd~~~~--~ 957 (1134)
....|.| ++++|++.+- --.|.+|++..|++...-. .-...-+.|+|+|++++..... -+++|.+|..+.. +
T Consensus 148 H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 148 HSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK 226 (346)
T ss_pred ceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence 8899999 8998887653 2389999999876533211 2334568999999999887665 5899999999873 3
Q ss_pred cccceeeecCCCCCCCCcCceEEEECCCCcEEEEEE--CCeEEEEeC--CCcceeccCCCCCCCCCeEEEEEccCCCEEE
Q 001160 958 KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH--ESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVY 1033 (1134)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~--d~~v~vwd~--~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~ 1033 (1134)
......+......-........+..++||++|.++. ...|.+|.+ .+..+........+...-..+.|+++|++|+
T Consensus 227 ~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Li 306 (346)
T COG2706 227 FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLI 306 (346)
T ss_pred EEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence 221112222222222235678899999999999974 347888888 4444444433333455578899999999999
Q ss_pred EEecCC-cEEEEeCC--Ccce
Q 001160 1034 AGFCDG-AIGVFDAE--TLRF 1051 (1134)
Q Consensus 1034 ~~~~dg-~I~vwd~~--~~~~ 1051 (1134)
++.+++ .|.+|.++ +|++
T Consensus 307 aa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 307 AANQKSDNITVFERDKETGRL 327 (346)
T ss_pred EEccCCCcEEEEEEcCCCceE
Confidence 988774 58888765 4443
No 252
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.42 E-value=2.6e-10 Score=120.03 Aligned_cols=361 Identities=12% Similarity=0.150 Sum_probs=227.6
Q ss_pred EEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEE
Q 001160 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF 603 (1134)
Q Consensus 524 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 603 (1134)
.+|...+......+....-++..+++||.|.+|++.. ...|.+|.-..+..+..+... .|..+.|+|.+++|
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~-----~~~V~~~~g~~~~~l~~~~~~---~V~~~~fSP~~kYL 86 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEH-----AAGVECWGGPSKAKLVRFRHP---DVKYLDFSPNEKYL 86 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhh-----ccceEEccccchhheeeeecC---CceecccCccccee
Confidence 3455444444444444566888999999999999875 334999998877755555532 68889999999999
Q ss_pred EEEeCCC---------------eEEEEECCCCeeEEEEeCCCCCCCcc-eEEEccCCCEEEEEeCCCcEEEEECCCchhh
Q 001160 604 LAAGDEF---------------QIKFWDMDNMNMLTTVDADGGLPASP-RLRFNKEGSLLAVTTSDNGIKILANSDGVRL 667 (1134)
Q Consensus 604 ~~~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~ 667 (1134)
.+-+..+ .+.+||..++..+..+.........+ -+.|+.+.+++|-. ....+.|+++ ++ ..
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~-n~ 163 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TD-NI 163 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CC-cc
Confidence 9866443 49999999999999887654422233 67899888887765 3347888887 33 10
Q ss_pred hhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCcc
Q 001160 668 LRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKI 747 (1134)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 747 (1134)
..+... .+
T Consensus 164 ----~~~p~~--------------~l------------------------------------------------------ 171 (561)
T COG5354 164 ----EEHPFK--------------NL------------------------------------------------------ 171 (561)
T ss_pred ----ccCchh--------------hc------------------------------------------------------
Confidence 011000 00
Q ss_pred ceeccCCCCCccceeEeecCCcccccceEEEEEecCCc--ceEE-----eeccCeeEEeecccccCCCCCCcccccCccc
Q 001160 748 KSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGL--SLLA-----LASNAVHKLWKWQRTERNPSGKATANVAPQL 820 (1134)
Q Consensus 748 ~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~-----~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 820 (1134)
....|....++|.|. .|+. .+..+.+++|.+..+ +.+...+ +
T Consensus 172 -----------------------r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~------s~l~tk~--l 220 (561)
T COG5354 172 -----------------------RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN------SVLVTKN--L 220 (561)
T ss_pred -----------------------cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC------Ceeeeee--e
Confidence 012233444444321 1111 123455566654311 1111100 0
Q ss_pred ccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe------------CCeEEEEECCCCeEEEEecCCCCceEEEE
Q 001160 821 WQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS------------GGKVSLFNMMTFKVMTMFMSPPPAATFLA 888 (1134)
Q Consensus 821 w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s------------dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 888 (1134)
+ ...-..+.|.+.|+++.+-- ...+.|+++....+.... .-.++|...+
T Consensus 221 ------------f------k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~ 281 (561)
T COG5354 221 ------------F------KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFT 281 (561)
T ss_pred ------------E------eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeee
Confidence 0 11123456666676655321 245888888754443333 5678999999
Q ss_pred EcCCCCcEEE-EEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCC---CcEEEEeCCCcccccceee
Q 001160 889 FHPQDNNIIA-IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD---AQLCMWSIDKWEKLKSRFI 964 (1134)
Q Consensus 889 ~s~~~~~~la-sg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D---~~i~iWd~~~~~~~~~~~~ 964 (1134)
|.|...++.+ +|-.+..+.++|++.. +...+ ....=..+.|||.+++++.++-| |.+-+||....-. ++
T Consensus 282 W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~----~~ 354 (561)
T COG5354 282 WEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK----VA 354 (561)
T ss_pred ecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceE----EE
Confidence 9994444433 3357889999999866 33333 33344568899999999998876 5699999887442 23
Q ss_pred ecCCCCCCCCcCceEEEECCCCcEEEEE-------ECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEec
Q 001160 965 QAPAGRQSPLVGETKVQFHNDQTHLLVV-------HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC 1037 (1134)
Q Consensus 965 ~~~~~~~~~~~~v~~~~fspdg~~l~~~-------~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~ 1037 (1134)
....+. ..+.+.|+|||.++.+. -|..|.+||+.+.... +.+.+.|.|.|++..+.+.
T Consensus 355 ~~~~~~-----n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f----------el~~~~W~p~~~~~ttsSs 419 (561)
T COG5354 355 GAFNGL-----NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF----------ELTNITWDPSGQYVTTSSS 419 (561)
T ss_pred EEeecC-----CceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh----------hhhhccccCCcccceeecc
Confidence 233332 35778899999998883 2678999999666543 4567788898998887776
Q ss_pred CC
Q 001160 1038 DG 1039 (1134)
Q Consensus 1038 dg 1039 (1134)
+.
T Consensus 420 ~~ 421 (561)
T COG5354 420 CP 421 (561)
T ss_pred CC
Confidence 54
No 253
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.38 E-value=7.1e-11 Score=117.68 Aligned_cols=263 Identities=13% Similarity=0.157 Sum_probs=176.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeecccccccccccccc--ccCCcCeEEEEEcCCCC-
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL--NDAAISVNRCVWGPDGL- 421 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~i~~spdg~- 421 (1134)
..+-|.+|.|...|. +||+|..+|.|.++.-.....- .++....-.... ....-+ -.-...|..+.|.+++.
T Consensus 24 eadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~~---ey~~~t~fqshe-pEFDYLkSleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 24 EADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYKG---EYNFQTEFQSHE-PEFDYLKSLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred hhcceeeEEeecccc-eEeecCCCCeEEEeeccccccc---ceeeeeeeeccC-cccchhhhhhhhhhhhhceecCCCCc
Confidence 346799999999998 7999999999999975432220 111110000000 000001 11346799999999765
Q ss_pred -EEEEEeCCCeEEEEEcCCCCccc--------------------------------eeeE-EecccCCeeEEEEecCCCc
Q 001160 422 -MLGVAFSKHIVHLYTYNPTGELR--------------------------------QHLE-IDAHVGGVNDIAFAHPNKQ 467 (1134)
Q Consensus 422 -~las~~~dg~i~iwd~~~~~~~~--------------------------------~~~~-~~~h~~~v~~l~~s~d~~~ 467 (1134)
.+...+.|.+|++|.+....... +... -.+|.--|+++.++.|++
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E- 177 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE- 177 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence 56667799999999986422111 0011 136788899999999998
Q ss_pred EEEEEEcCCCcEEEEECCCCee---eEEecCC-----CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCC-----c-
Q 001160 468 LCIVTCGDDKMIKVWDVVAGRK---QYTFEGH-----EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG-----S- 533 (1134)
Q Consensus 468 ~~l~sg~~d~~i~iwd~~~~~~---~~~~~~h-----~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-----~- 533 (1134)
.++++ +|=.|-+|+++--.. +-.++.+ ..-|++..|+|... ..++-.+..|+|++.|++... .
T Consensus 178 -t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 178 -TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred -eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhh
Confidence 56665 478899999874322 2223332 24578888998765 688888899999999998321 1
Q ss_pred eeEe----------cCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC-CCeeEEEecCccCc-----------c-
Q 001160 534 RVDY----------DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKR-----------S- 590 (1134)
Q Consensus 534 ~~~~----------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~-----------~- 590 (1134)
.... ..--..|..+.|+.+|+++++-. --+|.+||+. ..+++.+++.|..- .
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~I 329 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAI 329 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccch
Confidence 1111 11123678999999999999863 3579999994 56777777766421 1
Q ss_pred --eEEEEEeCCCCEEEEEeCCCeEEEEECCCCe
Q 001160 591 --LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1134)
Q Consensus 591 --v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1134)
-..++|+.++.++++|+....+++++...|.
T Consensus 330 fdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 330 FDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 2347899999999999999999999965543
No 254
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=6.6e-11 Score=120.37 Aligned_cols=250 Identities=10% Similarity=0.137 Sum_probs=182.7
Q ss_pred CCcCeEEEEEcCCCC--EEEEEeCCCeEEEEEcCCCCcccee---eEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEE
Q 001160 407 AAISVNRCVWGPDGL--MLGVAFSKHIVHLYTYNPTGELRQH---LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 407 h~~~V~~i~~spdg~--~las~~~dg~i~iwd~~~~~~~~~~---~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~i 481 (1134)
....|+.++|.-|++ .+...+.+..+....+......... ........+|..++.. || .|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEE
Confidence 456788888887665 4444446667777777665443321 1222345667777664 34 5889999999999
Q ss_pred EECCCCe----eeEEecCCCCCeEEEEeeccCCccEEEEEecC--CeEEEEEccCCCceeEecCC---------CCcEEE
Q 001160 482 WDVVAGR----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAID--GKIKAWLYDYLGSRVDYDAP---------GNWCTM 546 (1134)
Q Consensus 482 wd~~~~~----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~~---------~~~v~~ 546 (1134)
|..+.+. .+..+..+ ..+..+.-++... .++++|+.. ..+.+||++..+.++.-... .-+++.
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p-~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDP-YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCCCC-ceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 9987443 23334333 4455555444432 577779998 88999999987555433221 126788
Q ss_pred EEECCC--CCEEEEEeeCCCCCCcEEEEeCCCCe-eEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeE
Q 001160 547 MAYSAD--GTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1134)
Q Consensus 547 ~~~s~~--~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1134)
+.|-+. ...+++++. -+++++||.+.++ ++..|..... +++++...|+++++++|..-|.+..||.+.++..
T Consensus 208 i~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~E~-~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFLEN-PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred ceecCCCCCceEEEEec----ceeEEEecCcccCcceeEeccccC-cceeeeecCCCcEEEEecccchhheecccCceee
Confidence 999888 888998874 7789999999754 6777776655 8999999999999999999999999999999888
Q ss_pred EE-EeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhh
Q 001160 624 TT-VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1134)
Q Consensus 624 ~~-~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~ 669 (1134)
.. +.+- .+.|.++..+|.++++++++-|..+||+|+.+.+.+.+
T Consensus 283 g~~~kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 283 GCGLKGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred ccccCCc--cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 76 5544 34789999999999999999999999999999644333
No 255
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.37 E-value=4e-11 Score=119.54 Aligned_cols=110 Identities=19% Similarity=0.316 Sum_probs=91.6
Q ss_pred CCceEEEEeccCCCEEEEEe---CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCC---CcEEEEEcCC
Q 001160 840 EESAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---SSVQIYNVRV 913 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d---g~i~iwd~~~ 913 (1134)
.++|.+++|+|+|+.+|+.. +..|.+||++ ++.+..+. ...+..+.||| +|++|++|+.+ |.|.+||+.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 55799999999999887663 5789999997 66666664 56788999999 89999998754 6799999999
Q ss_pred ceEEEEecCcccceEEEEEecCCCEEEEEcC------CCcEEEEeCCC
Q 001160 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGA------DAQLCMWSIDK 955 (1134)
Q Consensus 914 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~------D~~i~iWd~~~ 955 (1134)
.+.+.... |. .++.++|||||++++++.. |..++||++..
T Consensus 135 ~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 135 KKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 88887765 43 4789999999999999874 78899999964
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=1.6e-10 Score=131.05 Aligned_cols=244 Identities=10% Similarity=0.046 Sum_probs=151.0
Q ss_pred CccccCccccceEEEEecCCCCeeEEEEecCCCe--EEEEEeCCC--cEEEEEccCccccccccceeecccccccccccc
Q 001160 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT--ILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1134)
Q Consensus 327 ~~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~--llasg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1134)
..+|..|...++..........+..-+|||||+. ++++...+| .|.+.++.+++...
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~------------------- 225 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK------------------- 225 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-------------------
Confidence 3455555544444444445667788999999975 333554444 57777888775432
Q ss_pred ccccCCcCeEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCC--ccceeeEEecccCCeeEEEEecCCCcEEEEE-Ec
Q 001160 403 LLNDAAISVNRCVWGPDGLMLGVAFS-----KHIVHLYTYNPTG--ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT-CG 474 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~~las~~~-----dg~i~iwd~~~~~--~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s-g~ 474 (1134)
+....+.....+|||||+.||..+. +..+.+|++.++. ..+. ...++.......+|+|||+. |+. ..
T Consensus 226 -lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~--Laf~s~ 300 (428)
T PRK01029 226 -ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTR--LVFVSN 300 (428)
T ss_pred -eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCE--EEEEEC
Confidence 2223444567899999999987653 2234557776532 2221 22222334567899999994 443 34
Q ss_pred CCCcEEEE--ECCC-CeeeEEecCCCCCeEEEEeeccCCccEEEEEecC---CeEEEEEccCCCceeEecCCCCcEEEEE
Q 001160 475 DDKMIKVW--DVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1134)
Q Consensus 475 ~d~~i~iw--d~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1134)
.++...+| ++.. +.....+..+...+....|+|++ +.|+..+.+ ..|.+||+.+++..... .....+....
T Consensus 301 ~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG--~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~ 377 (428)
T PRK01029 301 KDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG--KKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPS 377 (428)
T ss_pred CCCCceEEEEECcccccceEEeccCCCCccceeECCCC--CEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceE
Confidence 46654555 4432 33344555555667788888765 777766543 46999999877654433 2334567899
Q ss_pred ECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCC
Q 001160 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1134)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 600 (1134)
|+|||+.|+..... .+...|+++|+.+++........ . .+...+|+|..
T Consensus 378 wSpDG~~L~f~~~~-~g~~~L~~vdl~~g~~~~Lt~~~-g-~~~~p~Ws~~~ 426 (428)
T PRK01029 378 WAIDSLHLVYSAGN-SNESELYLISLITKKTRKIVIGS-G-EKRFPSWGAFP 426 (428)
T ss_pred ECCCCCEEEEEECC-CCCceEEEEECCCCCEEEeecCC-C-cccCceecCCC
Confidence 99999998865532 34577999999887765444322 2 45567777743
No 257
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.36 E-value=6.3e-10 Score=117.17 Aligned_cols=314 Identities=10% Similarity=0.057 Sum_probs=205.8
Q ss_pred CcceeEeeCCCCCCccc------cCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCC---------------cEE
Q 001160 314 QSDEVSFAGVAHTPNVY------SQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVG---------------DIS 372 (1134)
Q Consensus 314 ~~~~v~~s~~g~~~~~~------~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg---------------~i~ 372 (1134)
++..+.+||.|..++.. .++......+..+.|. .|..+.|||.++ +|.+-+..+ .+.
T Consensus 34 p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~~-~V~~~~fSP~~k-YL~tw~~~pi~~pe~e~sp~~~~n~~~ 111 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRHP-DVKYLDFSPNEK-YLVTWSREPIIEPEIEISPFTSKNNVF 111 (561)
T ss_pred chhheeecCcchheehhhccceEEccccchhheeeeecC-CceecccCcccc-eeeeeccCCccChhhccCCccccCcee
Confidence 44557778888776554 2333444455556665 799999999998 677765443 489
Q ss_pred EEEccCccccccccceeeccccccccccccccccCCcC--eE-EEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEE
Q 001160 373 LWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS--VN-RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI 449 (1134)
Q Consensus 373 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~--V~-~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~ 449 (1134)
+||..+|..+..... ...+ .. -+.|+-|.+++|-- ....++|+++...-.......+
T Consensus 112 vwd~~sg~iv~sf~~-------------------~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~l 171 (561)
T COG5354 112 VWDIASGMIVFSFNG-------------------ISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNL 171 (561)
T ss_pred EEeccCceeEeeccc-------------------cCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhc
Confidence 999999988765221 2222 33 67899999988766 3446999997322111211122
Q ss_pred ecccCCeeEEEEecCCCcEEEEE-----EcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEE-------
Q 001160 450 DAHVGGVNDIAFAHPNKQLCIVT-----CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST------- 517 (1134)
Q Consensus 450 ~~h~~~v~~l~~s~d~~~~~l~s-----g~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~------- 517 (1134)
. ...|....|+|.+....|+. .+.++++++|.+..++.+.+-.-....=..+.|.+.+ .+|+.-
T Consensus 172 r--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g--~~ll~l~~t~~ks 247 (561)
T COG5354 172 R--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLG--KYLLVLVMTHTKS 247 (561)
T ss_pred c--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCC--ceEEEEEEEeeec
Confidence 1 35688899999865434443 4678899999998777665432222222334555444 443321
Q ss_pred ----ecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEE
Q 001160 518 ----AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGV 593 (1134)
Q Consensus 518 ----~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~ 593 (1134)
-....+.++++......... ...++|...+|.|.++.+++++. .....+.++|++.. ....+... .=+.
T Consensus 248 nKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g--~~pa~~s~~~lr~N-l~~~~Pe~---~rNT 320 (561)
T COG5354 248 NKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISG--YMPASVSVFDLRGN-LRFYFPEQ---KRNT 320 (561)
T ss_pred ccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEec--ccccceeecccccc-eEEecCCc---cccc
Confidence 11245778888744444443 55779999999999999887762 24667889998865 43333322 3355
Q ss_pred EEEeCCCCEEEEEeCC---CeEEEEECCCCeeEE-EEeCCCCCCCcceEEEccCCCEEEEEeC------CCcEEEEECCC
Q 001160 594 VQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLT-TVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILANSD 663 (1134)
Q Consensus 594 ~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~~~~~------dg~i~iw~~~~ 663 (1134)
+.|+|.+++++.++-| |.+.+||........ .+.+. ...-+.|+||++++.+... |..+.||++..
T Consensus 321 ~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~----n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 321 IFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL----NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred ccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC----CceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 7799999999998744 789999988765544 55543 3466789999999887654 78899999865
Q ss_pred c
Q 001160 664 G 664 (1134)
Q Consensus 664 ~ 664 (1134)
.
T Consensus 397 ~ 397 (561)
T COG5354 397 A 397 (561)
T ss_pred c
Confidence 5
No 258
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=7.2e-11 Score=125.51 Aligned_cols=285 Identities=16% Similarity=0.151 Sum_probs=188.3
Q ss_pred cccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCC-CCeEEEEeeccCCccEEEEEecCCeEEEEEcc
Q 001160 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE-APVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529 (1134)
Q Consensus 451 ~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~ 529 (1134)
.|...-+.|..+|||++ +++||...-.|++||+..-... |..|. ..+..+.+. +.|-..++.-..|.+|.+...-
T Consensus 49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiL-sDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred CCccccceeEecCCCcE-EEEecccCCceEEEEcccceee--eeecccccceeEEEe-ccchhhheEeecCceeeehhhc
Confidence 46777889999999997 7899999999999998765543 33332 333333222 1222445555566666654211
Q ss_pred CCCceeEecCCCCcEEEEEECC-CCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeC
Q 001160 530 YLGSRVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608 (1134)
Q Consensus 530 ~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 608 (1134)
.......++. .-..++++. ...+++.++ ...|+-++++.|..+..|..... .++++..++....|++|+.
T Consensus 125 G~hy~~RIP~---~GRDm~y~~~scDly~~gs-----g~evYRlNLEqGrfL~P~~~~~~-~lN~v~in~~hgLla~Gt~ 195 (703)
T KOG2321|consen 125 GRHYRTRIPK---FGRDMKYHKPSCDLYLVGS-----GSEVYRLNLEQGRFLNPFETDSG-ELNVVSINEEHGLLACGTE 195 (703)
T ss_pred CeeeeeecCc---CCccccccCCCccEEEeec-----CcceEEEEccccccccccccccc-cceeeeecCccceEEeccc
Confidence 1101111111 112344443 333444433 33499999999999999887765 8999999999999999999
Q ss_pred CCeEEEEECCCCeeEEEEeCCC---------CCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCccccc
Q 001160 609 EFQIKFWDMDNMNMLTTVDADG---------GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKN 679 (1134)
Q Consensus 609 dg~i~iwd~~~~~~~~~~~~~~---------~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 679 (1134)
+|.|.+||.+....+.++.... ....|+++.|+.+|-.+++|+.+|.+.|||+.+...++..-.+...++.
T Consensus 196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~ 275 (703)
T KOG2321|consen 196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIK 275 (703)
T ss_pred CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCcccee
Confidence 9999999999888777665332 2345899999999999999999999999999887444332222221111
Q ss_pred CCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCcc
Q 001160 680 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 759 (1134)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~ 759 (1134)
. +.|- -..+...+++.....+++||-.++....
T Consensus 276 ~-------------------------l~~~----------------------~~~~q~~v~S~Dk~~~kiWd~~~Gk~~a 308 (703)
T KOG2321|consen 276 K-------------------------LDWQ----------------------DTDQQNKVVSMDKRILKIWDECTGKPMA 308 (703)
T ss_pred e-------------------------eccc----------------------ccCCCceEEecchHHhhhcccccCCcee
Confidence 0 0110 0113345566666899999988765443
Q ss_pred ceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeeccc
Q 001160 760 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQR 803 (1134)
Q Consensus 760 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~ 803 (1134)
.+. ....+..+++-|++-.++++-.++.+..|-++.
T Consensus 309 siE--------pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 309 SIE--------PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ecc--------ccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 332 345588999999999899888887777765544
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.33 E-value=3.9e-09 Score=113.02 Aligned_cols=203 Identities=15% Similarity=0.112 Sum_probs=119.6
Q ss_pred EEEEeccCCCEEEEEe---CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC-ceEE--
Q 001160 844 ACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-DEVK-- 917 (1134)
Q Consensus 844 ~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~-~~~~-- 917 (1134)
..++++|||+++.+.. +..|.+.|+.+++.+..+.... ...-...+. +..+ +-+.||......+.+ |+..
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-CccE--EEeecCceEEEEecCCCceEEe
Confidence 3467777887777664 5778888888888777776422 111122222 2221 122344433332221 2111
Q ss_pred --EEecCcccceE-EEEEec-CCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCC----CCCcCceEEEECCCCcEE
Q 001160 918 --TKLKGHQNRIT-GLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ----SPLVGETKVQFHNDQTHL 989 (1134)
Q Consensus 918 --~~l~~h~~~i~-~l~~s~-d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~fspdg~~l 989 (1134)
..+.+-..++. .-.|++ ||+++..... |+|.+-|+...+.............. -......-++++|||+++
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 11111001100 014456 8877766665 99999997654432222222111100 011344459999999998
Q ss_pred EEEE---C--------CeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCC-EEEEEe-cCCcEEEEeCCCcceeeec
Q 001160 990 LVVH---E--------SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL-LVYAGF-CDGAIGVFDAETLRFRCRI 1055 (1134)
Q Consensus 990 ~~~~---d--------~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~~~~-~dg~I~vwd~~~~~~~~~~ 1055 (1134)
.+.. . +.|.++|. +.+.+..+.. ...+..++|||||+ +|++.+ .++.|.++|..+++.+.++
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v----G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL----GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeC----CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 8832 1 57999999 6666666554 46899999999999 877666 5788999999999999887
No 260
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.32 E-value=1.6e-10 Score=115.26 Aligned_cols=163 Identities=18% Similarity=0.320 Sum_probs=115.1
Q ss_pred EEEEEcCCCCEEEEEeC----------CCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEE
Q 001160 412 NRCVWGPDGLMLGVAFS----------KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 412 ~~i~~spdg~~las~~~----------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~i 481 (1134)
..+.|+|+|++|++-.. -+...+|.++..........+. ..++|.+++|+|+|+.+.+++|..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 46789999998886533 2345666664332222211222 345799999999999755666777889999
Q ss_pred EECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecC---CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEE
Q 001160 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1134)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1134)
||++ ++.+..+. ...+..+.|+|.+ ++|++++.+ |.|.+||.++.+.+.... ...++.++|+|||+++++
T Consensus 88 yd~~-~~~i~~~~--~~~~n~i~wsP~G--~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQPRNTISWSPDG--RFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc-ccEeEeec--CCCceEEEECCCC--CEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEEE
Confidence 9986 77777774 5678899998865 899888754 679999999665554443 345789999999999998
Q ss_pred EeeC--CCCCCcEEEEeCCCCeeEEEe
Q 001160 559 CGTS--KEGESHLVEWNESEGAIKRTY 583 (1134)
Q Consensus 559 ~~~~--~~~~~~i~~wd~~~~~~~~~~ 583 (1134)
+... ...|..++||+.. |+.+...
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEec
Confidence 8752 1235668999974 5555443
No 261
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=3.5e-10 Score=130.65 Aligned_cols=237 Identities=13% Similarity=0.089 Sum_probs=147.7
Q ss_pred cccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCC--CcEEEEEccCccccccccceeecccccccccccccccc
Q 001160 329 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1134)
Q Consensus 329 ~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 406 (1134)
++..|....+....+.+...+...+|||||+++++++..+ ..|.+||+.+++... +..
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~ 240 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITN 240 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccC
Confidence 4444544444445556778899999999999766655433 368899998876432 122
Q ss_pred CCcCeEEEEEcCCCCEEEEE-eCCC--eEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCC--CcEEE
Q 001160 407 AAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKV 481 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d--~~i~i 481 (1134)
..+.+...+|||||+.|+.. +.+| .|.+||+.+++.. .+..+........|+|||+. ++++...+ ..|++
T Consensus 241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYK 315 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEE
Confidence 33445678999999988854 4444 6888899886532 34445556677899999995 23333333 36888
Q ss_pred EECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecC-C--eEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEE
Q 001160 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-G--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1134)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d-~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1134)
+|+.+++... +...........|+|++ +.++..+.+ + .|.+||+.+++...... ........|+|||+.++.
T Consensus 316 ~d~~~g~~~~-lt~~~~~~~~~~~Spdg--~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~ 390 (430)
T PRK00178 316 VNVNGGRAER-VTFVGNYNARPRLSADG--KTLVMVHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIY 390 (430)
T ss_pred EECCCCCEEE-eecCCCCccceEECCCC--CEEEEEEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEE
Confidence 8888777533 22112223345676654 677666543 3 57888988765433222 122235689999999987
Q ss_pred EeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeC
Q 001160 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1134)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1134)
.+.. .+...|++++.. +.....+..... .+...+|+|
T Consensus 391 ~~~~-~g~~~l~~~~~~-g~~~~~l~~~~g-~~~~p~ws~ 427 (430)
T PRK00178 391 ATRQ-QGRGVLMLVSIN-GRVRLPLPTAQG-EVREPSWSP 427 (430)
T ss_pred EEec-CCceEEEEEECC-CCceEECcCCCC-CcCCCccCC
Confidence 7642 234568888875 344444443322 455566665
No 262
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.31 E-value=8.7e-09 Score=114.32 Aligned_cols=247 Identities=15% Similarity=0.177 Sum_probs=163.7
Q ss_pred CcCeEEEEEcCCCCEEEEEeC----CCeEEEEEcCCC-CccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEE
Q 001160 408 AISVNRCVWGPDGLMLGVAFS----KHIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1134)
Q Consensus 408 ~~~V~~i~~spdg~~las~~~----dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iw 482 (1134)
......++++|++++|.+... ++.|..|++... ..+............-..++++|+++. ++++...++.|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSE-EEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCE-EEEEEccCCeEEEE
Confidence 345678999999999999866 579999998875 344433343333445678999999994 34444569999999
Q ss_pred ECCC-CeeeEE---ec----------CCCCCeEEEEeeccCCccEEEEEe-cCCeEEEEEccCCCc-e---eEe-cCCCC
Q 001160 483 DVVA-GRKQYT---FE----------GHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLGS-R---VDY-DAPGN 542 (1134)
Q Consensus 483 d~~~-~~~~~~---~~----------~h~~~v~~i~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~-~---~~~-~~~~~ 542 (1134)
++.. |..... +. .......++.++|++ +++++.. ....|.+|+++.... + ..+ ...+.
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg--~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG--RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS--SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCC--CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 9987 443322 21 123456788887765 6666554 456899999987652 1 122 23455
Q ss_pred cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC--CCe--eEEEecCc----cC-cceEEEEEeCCCCEEEEEe-CCCeE
Q 001160 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES--EGA--IKRTYSGF----RK-RSLGVVQFDTTRNRFLAAG-DEFQI 612 (1134)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~--~~~~~~~~----~~-~~v~~~~~~~~~~~l~~~~-~dg~i 612 (1134)
....++|+|+++++++... ..+.|.++++. ++. .+...... .. .....+.++|||++|+++. ..+.|
T Consensus 193 GPRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp SEEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred CCcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 7889999999999988763 57779999887 443 22332221 11 1467799999999988865 67889
Q ss_pred EEEECC--CCe--eEEEEeCCCCCCCcceEEEccCCCEEEEEeC-CCcEEEEECC
Q 001160 613 KFWDMD--NMN--MLTTVDADGGLPASPRLRFNKEGSLLAVTTS-DNGIKILANS 662 (1134)
Q Consensus 613 ~iwd~~--~~~--~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~-dg~i~iw~~~ 662 (1134)
.+|+++ +++ .+..+...+ .....++++|+|++|+++.. ++.|.+|++.
T Consensus 270 ~vf~~d~~~g~l~~~~~~~~~G--~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVPTGG--KFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEECTTTTTEEEEEEEEESS--SSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEecCCCceEEEEEEeCCC--CCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999994 233 333333322 24689999999999998874 6789999764
No 263
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.30 E-value=6.6e-10 Score=128.48 Aligned_cols=204 Identities=15% Similarity=0.130 Sum_probs=137.4
Q ss_pred CeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCC---CcEEEEEcCCceEEEEecCcccceEEEEEecCCC
Q 001160 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 937 (1134)
Q Consensus 861 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d---g~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~ 937 (1134)
..|.++|...... +.+..+...+...+|+| |+++|+.++.+ ..|++||+.+++... +..+.+.+.+++|+|||+
T Consensus 170 ~~l~~~d~~g~~~-~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGANP-QTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCCC-EEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 3588888864443 44555666788999999 89988887654 479999999886533 334556677899999998
Q ss_pred EEEE-EcCCC--cEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEEC----CeEEEEeCCCcceecc
Q 001160 938 ALVS-SGADA--QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE----SQISVYDSKLECSRSW 1010 (1134)
Q Consensus 938 ~l~s-~~~D~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d----~~v~vwd~~~~~~~~~ 1010 (1134)
.|+. .+.++ .|++||+.+++... +. .+. .......|+|||++|+.+.+ ..|.++|+.+.....+
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~---l~---~~~---~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l 317 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTR---LT---NGP---GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL 317 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEE---CC---CCC---CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 7764 44443 58889998765321 11 111 12346789999999887432 2688888854444333
Q ss_pred CCCCCCCCCeEEEEEccCCCEEEEEecCC---cEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEE
Q 001160 1011 SPKDALPAPISSAIYSCDGLLVYAGFCDG---AIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIAL 1087 (1134)
Q Consensus 1011 ~~~~~h~~~v~~v~~s~dg~~l~~~~~dg---~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s 1087 (1134)
... ...+..+.|+|||++|+.++.++ .|.+||+.++.... +... .......|+| ||++|+.
T Consensus 318 ~~~---~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-----------~~~~~p~~sp-dg~~l~~ 381 (417)
T TIGR02800 318 TFR---GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-----------GLDESPSFAP-NGRMILY 381 (417)
T ss_pred ecC---CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-----------CCCCCceECC-CCCEEEE
Confidence 322 45677889999999999888776 79999998865432 2111 1112357888 6777777
Q ss_pred EeCCC
Q 001160 1088 GMSDG 1092 (1134)
Q Consensus 1088 ~~~Dg 1092 (1134)
.+.++
T Consensus 382 ~~~~~ 386 (417)
T TIGR02800 382 ATTRG 386 (417)
T ss_pred EEeCC
Confidence 66654
No 264
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=1.6e-09 Score=122.96 Aligned_cols=227 Identities=11% Similarity=0.071 Sum_probs=141.5
Q ss_pred ccCCcCeEEEEEcCCCCEEE---EEeCC--CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcC----
Q 001160 405 NDAAISVNRCVWGPDGLMLG---VAFSK--HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD---- 475 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~la---s~~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~---- 475 (1134)
......+.+-+|||||+.++ +...+ ..|.+.++.+++..+ +....+.....+|+|||+. ++++...
T Consensus 181 t~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~-Laf~s~~~g~~ 255 (428)
T PRK01029 181 TQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKL-LAFISDRYGNP 255 (428)
T ss_pred ccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCE-EEEEECCCCCc
Confidence 33455677889999998633 33333 468888888775432 2234445567899999995 2333322
Q ss_pred CCcEEEEECCCC---eeeEEecCCCCCeEEEEeeccCCccEEEEEe-cCCeEEEEEc--cC-CCceeEecCCCCcEEEEE
Q 001160 476 DKMIKVWDVVAG---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLY--DY-LGSRVDYDAPGNWCTMMA 548 (1134)
Q Consensus 476 d~~i~iwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~-~d~~i~~wd~--~~-~~~~~~~~~~~~~v~~~~ 548 (1134)
|-.+.+|++..+ +......++.+.....+|+|++ ..|+..+ .+|...+|.+ .. +.....+......+....
T Consensus 256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG--~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~ 333 (428)
T PRK01029 256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG--TRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPA 333 (428)
T ss_pred ceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECcccccceEEeccCCCCcccee
Confidence 334455777653 3333333333444667887754 7666655 4666556644 32 223344444455677889
Q ss_pred ECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe---CCCeEEEEECCCCeeEEE
Q 001160 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG---DEFQIKFWDMDNMNMLTT 625 (1134)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~ 625 (1134)
|+|||+.|+..+.. ++...|.+||+.+++....... .. .+....|+|||+.|+..+ ....|+++|+.+++....
T Consensus 334 wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~~-~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 334 WSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-PE-NKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI 410 (428)
T ss_pred ECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-CC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 99999999977642 2356799999998876543332 22 466789999999887643 246799999988776554
Q ss_pred EeCCCCCCCcceEEEccCC
Q 001160 626 VDADGGLPASPRLRFNKEG 644 (1134)
Q Consensus 626 ~~~~~~~~~v~~~~~s~d~ 644 (1134)
.... ..+...+|+|-.
T Consensus 411 t~~~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 411 VIGS---GEKRFPSWGAFP 426 (428)
T ss_pred ecCC---CcccCceecCCC
Confidence 4322 235667888743
No 265
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=3.3e-10 Score=129.75 Aligned_cols=237 Identities=12% Similarity=0.077 Sum_probs=144.0
Q ss_pred cccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCC--cEEEEEccCccccccccceeecccccccccccccccc
Q 001160 329 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1134)
Q Consensus 329 ~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 406 (1134)
++..|....+....+.+...+.+..|||||++++.+...++ .|.+||+.+++... +..
T Consensus 200 l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~ 259 (448)
T PRK04792 200 LMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTS 259 (448)
T ss_pred EEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecC
Confidence 33334333333344456778999999999997665554444 58888988775422 111
Q ss_pred CCcCeEEEEEcCCCCEEEEE-eCCC--eEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCC--cEEE
Q 001160 407 AAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKV 481 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~--~i~i 481 (1134)
..+.....+|||||+.|+.. +.++ .|.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|++
T Consensus 260 ~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~ 334 (448)
T PRK04792 260 FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYR 334 (448)
T ss_pred CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEE
Confidence 22234578999999988764 5555 4777888876532 33445556778999999995 233343333 5777
Q ss_pred EECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEec-CC--eEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEE
Q 001160 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1134)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1134)
+|+.+++... +..........+|+|++ ++++..+. ++ .|.++|+.++.... +... .......|+|||+.++.
T Consensus 335 ~dl~~g~~~~-Lt~~g~~~~~~~~SpDG--~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~ 409 (448)
T PRK04792 335 VNLASGKVSR-LTFEGEQNLGGSITPDG--RSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIY 409 (448)
T ss_pred EECCCCCEEE-EecCCCCCcCeeECCCC--CEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEE
Confidence 7887776543 22122223445777654 66655544 44 35556776655433 2221 12234589999999987
Q ss_pred EeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeC
Q 001160 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1134)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1134)
.... ++...+++++. +|.....+..... .+...+|+|
T Consensus 410 ~~~~-~g~~~l~~~~~-~G~~~~~l~~~~g-~~~~p~Wsp 446 (448)
T PRK04792 410 STTY-QGKQVLAAVSI-DGRFKARLPAGQG-EVKSPAWSP 446 (448)
T ss_pred EEec-CCceEEEEEEC-CCCceEECcCCCC-CcCCCccCC
Confidence 6642 33456888886 5666666655433 566677776
No 266
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=2.2e-09 Score=113.93 Aligned_cols=293 Identities=11% Similarity=0.129 Sum_probs=187.1
Q ss_pred ceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCC
Q 001160 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 853 (1134)
Q Consensus 774 ~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~ 853 (1134)
.|.-+.|||+.++|++-+..-...-|+-. ....+.+||+.+|...+........ ...-.-..||.|++
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~-----------e~~~l~IWDI~tG~lkrsF~~~~~~-~~~WP~frWS~DdK 318 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDN-----------EGQQLIIWDIATGLLKRSFPVIKSP-YLKWPIFRWSHDDK 318 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccC-----------CCceEEEEEccccchhcceeccCCC-ccccceEEeccCCc
Confidence 36678899999999987754332222210 0113567777888766543321001 12223478999999
Q ss_pred EEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCC-----CcEEEEEcCCceEEEEecCcccceE
Q 001160 854 YVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED-----SSVQIYNVRVDEVKTKLKGHQNRIT 928 (1134)
Q Consensus 854 ~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d-----g~i~iwd~~~~~~~~~l~~h~~~i~ 928 (1134)
|+|--....|.||+..+..++-.-.-.-..|....|+| .+++||.=+.. ..+.+-.+.+++.+++-.-|.-.=.
T Consensus 319 y~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDc 397 (698)
T KOG2314|consen 319 YFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDC 397 (698)
T ss_pred eeEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeecc
Confidence 99988888999999987655443333456789999999 88999875432 4688888888888887666655445
Q ss_pred EEEEecCCCEEEEEcC----------CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE--E--C
Q 001160 929 GLAFSPTLNALVSSGA----------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--H--E 994 (1134)
Q Consensus 929 ~l~~s~d~~~l~s~~~----------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~--d 994 (1134)
.|.|-.+|.+|+.--. =..+.|+.+...+. ....+. ....+...+|-|.|..+++- . .
T Consensus 398 kLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI-pve~ve-------lke~vi~FaWEP~gdkF~vi~g~~~k 469 (698)
T KOG2314|consen 398 KLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI-PVEVVE-------LKESVIAFAWEPHGDKFAVISGNTVK 469 (698)
T ss_pred EEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC-Cceeee-------cchheeeeeeccCCCeEEEEEccccc
Confidence 6788888888875321 11244555544331 111111 11467889999999998883 2 3
Q ss_pred CeEEEEeCC--CcceeccCCCCCCCCCeEEEEEccCCCEEEEE---ecCCcEEEEeCCCcceeeecCCcccccccccCCC
Q 001160 995 SQISVYDSK--LECSRSWSPKDALPAPISSAIYSCDGLLVYAG---FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNT 1069 (1134)
Q Consensus 995 ~~v~vwd~~--~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~---~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1134)
.++.+|.++ ......+...+ ....+.+.|||.|++++.+ |..|.+.++|.........-...+
T Consensus 470 ~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh---------- 537 (698)
T KOG2314|consen 470 NTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH---------- 537 (698)
T ss_pred cceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc----------
Confidence 578889883 33333332233 4567889999999987664 457889999988532222111111
Q ss_pred CccEEEeecCCCCCEEEEEeCC------CcEEEEecC
Q 001160 1070 AHPLVIAPHPSEPNQIALGMSD------GAVHVVEPS 1100 (1134)
Q Consensus 1070 ~~~~~~~~~~~d~~~l~s~~~D------g~v~vW~~~ 1100 (1134)
....-+-|+| .|+|++++++- .-.++|...
T Consensus 538 ~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 538 FAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred cccccceECC-CCCEEEEeeehhhhccccceEEEEee
Confidence 2233588999 67999998863 345677764
No 267
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.8e-09 Score=124.80 Aligned_cols=222 Identities=12% Similarity=0.077 Sum_probs=142.0
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCC--cE
Q 001160 405 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MI 479 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~--~i 479 (1134)
..+...+...+|||||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .|
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~I 269 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPEI 269 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCceE
Confidence 3467789999999999999887643 469999998875432 2223344567899999994 233454454 68
Q ss_pred EEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEec-CC--eEEEEEccCCCceeEecCCCCcEEEEEECCCCCEE
Q 001160 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1134)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1134)
++||+.+++. ..+..+........|+|++ ..++..+. ++ .|.++|+.+++... +...........|+|||+++
T Consensus 270 y~~d~~~~~~-~~lt~~~~~~~~~~~spDg--~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 270 YVMDLASRQL-SRVTNHPAIDTEPFWGKDG--RTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEECCCCCe-EEcccCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 8889988765 3455555556667787754 66655543 33 57777776655433 22222334567899999999
Q ss_pred EEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC---CeEEEEECCCCeeEEEEeCCCCCC
Q 001160 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLTTVDADGGLP 633 (1134)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 633 (1134)
+..... ++...|.+||+.+++........ ......|+|+|+.++..+.+ ..++++++... ....+..+. .
T Consensus 346 ~~~~~~-~~~~~l~~~dl~tg~~~~lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~--g 418 (430)
T PRK00178 346 VMVHRQ-DGNFHVAAQDLQRGSVRILTDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQ--G 418 (430)
T ss_pred EEEEcc-CCceEEEEEECCCCCEEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCC--C
Confidence 877642 23446899999887653322221 12246899999998876633 35777777543 333443322 2
Q ss_pred CcceEEEcc
Q 001160 634 ASPRLRFNK 642 (1134)
Q Consensus 634 ~v~~~~~s~ 642 (1134)
.+...+|+|
T Consensus 419 ~~~~p~ws~ 427 (430)
T PRK00178 419 EVREPSWSP 427 (430)
T ss_pred CcCCCccCC
Confidence 456667766
No 268
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.4e-09 Score=124.64 Aligned_cols=222 Identities=12% Similarity=0.066 Sum_probs=140.9
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCc--E
Q 001160 405 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM--I 479 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~--i 479 (1134)
..+...+.+..|||||+.|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++. |
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~I 288 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPEI 288 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeEE
Confidence 3466789999999999999887543 368899998875421 2222333457899999995 3334555664 8
Q ss_pred EEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEe-cCC--eEEEEEccCCCceeEecCCCCcEEEEEECCCCCEE
Q 001160 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1134)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~-~d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1134)
++||+.+++. ..+..+.......+|+|++ +.++..+ .++ .|.++|+.+++... +..........+|+|||+++
T Consensus 289 y~~dl~tg~~-~~lt~~~~~~~~p~wSpDG--~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 289 YVVDIATKAL-TRITRHRAIDTEPSWHPDG--KSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred EEEECCCCCe-EECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEE
Confidence 8889887764 4455555566778887754 6665554 344 46666766555433 22233334567899999999
Q ss_pred EEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeC-CC--eEEEEECCCCeeEEEEeCCCCCC
Q 001160 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF--QIKFWDMDNMNMLTTVDADGGLP 633 (1134)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~ 633 (1134)
+..+.. .+...|.++|+.+++... +.... ......|+|+|+.++..+. ++ .+++++. ++.....+..+. .
T Consensus 365 ~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~--g 437 (448)
T PRK04792 365 IMVNRT-NGKFNIARQDLETGAMQV-LTSTR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ--G 437 (448)
T ss_pred EEEEec-CCceEEEEEECCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC--C
Confidence 887642 233467778988876533 22221 1223579999998877553 33 4777787 455555554432 2
Q ss_pred CcceEEEcc
Q 001160 634 ASPRLRFNK 642 (1134)
Q Consensus 634 ~v~~~~~s~ 642 (1134)
.+...+|+|
T Consensus 438 ~~~~p~Wsp 446 (448)
T PRK04792 438 EVKSPAWSP 446 (448)
T ss_pred CcCCCccCC
Confidence 456677776
No 269
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.27 E-value=8.8e-09 Score=110.31 Aligned_cols=239 Identities=11% Similarity=0.034 Sum_probs=150.8
Q ss_pred eccCCCEEEEEe-----------CCeEEEEECCCCeEEEEecCCCC-------ceEEEEEcCCCCcEEEEEe-C-CCcEE
Q 001160 848 LSKNDSYVMSAS-----------GGKVSLFNMMTFKVMTMFMSPPP-------AATFLAFHPQDNNIIAIGM-E-DSSVQ 907 (1134)
Q Consensus 848 ~s~dg~~la~~s-----------dg~i~vwd~~~~~~~~~~~~~~~-------~i~~l~~s~~~~~~lasg~-~-dg~i~ 907 (1134)
+||||+.++++. ++.|.+||..+++.+..+..... ....+++|| ||++|.+.. . +..|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence 999999887764 36799999999999988874322 234789999 888888665 4 68999
Q ss_pred EEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECC-CC
Q 001160 908 IYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN-DQ 986 (1134)
Q Consensus 908 iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp-dg 986 (1134)
+.|+.+++.+..+.--. ...-...+.+ ..++- +.|+......+.+.............+...+ . ...-.|++ ||
T Consensus 132 VvD~~~~kvv~ei~vp~-~~~vy~t~e~-~~~~~-~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~-v-~~rP~~~~~dg 206 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVPD-CYHIFPTAND-TFFMH-CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEY-L-INHPAYSNKSG 206 (352)
T ss_pred EEECCCCcEEEEEeCCC-CcEEEEecCC-ccEEE-eecCceEEEEecCCCceEEeeeeeecCCccc-c-ccCCceEcCCC
Confidence 99999999998876422 2222222222 22222 2344444433322111111111111110000 0 01114556 99
Q ss_pred cEEEEEECCeEEEEeCCCcceec---c---CCC----CCCCCCeEEEEEccCCCEEEEEe----------cCCcEEEEeC
Q 001160 987 THLLVVHESQISVYDSKLECSRS---W---SPK----DALPAPISSAIYSCDGLLVYAGF----------CDGAIGVFDA 1046 (1134)
Q Consensus 987 ~~l~~~~d~~v~vwd~~~~~~~~---~---~~~----~~h~~~v~~v~~s~dg~~l~~~~----------~dg~I~vwd~ 1046 (1134)
+++.++..|+|.+.|+.+..... + ... .-..+.+.-+++++|++++++.. ..+.|.++|.
T Consensus 207 ~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 207 RLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred cEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 99999888999999962221111 1 111 00234455599999999888743 2247999999
Q ss_pred CCcceeeecCCcccccccccCCCCccEEEeecCCCCC-EEEEEe-CCCcEEEEecCCCcc
Q 001160 1047 ETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPN-QIALGM-SDGAVHVVEPSDAEL 1104 (1134)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~l~s~~-~Dg~v~vW~~~~~~~ 1104 (1134)
.+++.+.++... ..+..++++| |++ +|.+.+ .++.|.+.|+.+.+.
T Consensus 287 ~t~kvi~~i~vG-----------~~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 287 KTGKRLRKIELG-----------HEIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred CCCeEEEEEeCC-----------CceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 999999888632 4566889999 667 666655 678999999988773
No 270
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.26 E-value=8.6e-10 Score=127.51 Aligned_cols=226 Identities=14% Similarity=0.098 Sum_probs=145.1
Q ss_pred CccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCC--CcEEEEEccCccccccccceeecccccccccccccc
Q 001160 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (1134)
Q Consensus 327 ~~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 404 (1134)
..++..|.........+.+...+.+.+|||||++++++...+ ..|.+||+.+++... +
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~ 229 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------V 229 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------e
Confidence 334555544344444455777899999999999655544332 479999998875432 2
Q ss_pred ccCCcCeEEEEEcCCCCEEEEE-eCC--CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEc-CCC--c
Q 001160 405 NDAAISVNRCVWGPDGLMLGVA-FSK--HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDK--M 478 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~-~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~-~d~--~ 478 (1134)
..+.+.+.+++|+|||+.|+.. +.+ ..|.+||+.++... .+..+........|+|||+ .|+..+ .++ .
T Consensus 230 ~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~--~l~~~s~~~g~~~ 303 (417)
T TIGR02800 230 ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGK--SIAFTSDRGGSPQ 303 (417)
T ss_pred ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCC--EEEEEECCCCCce
Confidence 2345567789999999988754 333 35888998876432 3334555556789999999 454443 333 6
Q ss_pred EEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCC---eEEEEEccCCCceeEecCCCCcEEEEEECCCCCE
Q 001160 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1134)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1134)
|+++|+.+++.. .+..+...+....|+|++ .+++.++.++ .|.+||+.+..... +.. ........|+|||+.
T Consensus 304 iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg--~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~-~~~~~~p~~spdg~~ 378 (417)
T TIGR02800 304 IYMMDADGGEVR-RLTFRGGYNASPSWSPDG--DLIAFVHREGGGFNIAVMDLDGGGERV-LTD-TGLDESPSFAPNGRM 378 (417)
T ss_pred EEEEECCCCCEE-EeecCCCCccCeEECCCC--CEEEEEEccCCceEEEEEeCCCCCeEE-ccC-CCCCCCceECCCCCE
Confidence 888898776643 444455566777887754 7888877765 78899988744332 222 223345689999999
Q ss_pred EEEEeeCCCCCCcEEEEeCCCCeeEEEecC
Q 001160 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1134)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1134)
|+...... +...+++.+.. +.....+..
T Consensus 379 l~~~~~~~-~~~~l~~~~~~-g~~~~~~~~ 406 (417)
T TIGR02800 379 ILYATTRG-GRGVLGLVSTD-GRFRARLPL 406 (417)
T ss_pred EEEEEeCC-CcEEEEEEECC-CceeeECCC
Confidence 98877532 23456666643 444444443
No 271
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1.4e-09 Score=117.30 Aligned_cols=194 Identities=13% Similarity=0.158 Sum_probs=155.7
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEe------c------------CCCcEEEEEEcCCCc
Q 001160 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA------H------------PNKQLCIVTCGDDKM 478 (1134)
Q Consensus 417 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s------~------------d~~~~~l~sg~~d~~ 478 (1134)
.|-+.++|....||.+++|+...++....+.....-.+..++..|. | .+...+++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3456799999999999999999876544322222233445555553 1 122237889999999
Q ss_pred EEEEECCCCeeeEEec--CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEE
Q 001160 479 IKVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1134)
Q Consensus 479 i~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1134)
|.++++..|+....+. .|.+.|.++.++..- ..|.+++.|+.+..|+.........+......+.+++++|||+.+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~--~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL--GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccccc--CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9999999999888776 599999999886544 789999999999999999888888888888899999999999999
Q ss_pred EEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCC-----CCEEEE-EeCCCeEEEEECCC
Q 001160 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT-----RNRFLA-AGDEFQIKFWDMDN 619 (1134)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~-~~~dg~i~iwd~~~ 619 (1134)
++++ ++|.+||+++++.+..|.+|.. +|++++|.-+ |.++++ ...+..+.+|-+..
T Consensus 160 ~~as------~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS------RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc------ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9885 4699999999999999999998 9999999877 677776 44666678887654
No 272
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.16 E-value=4.9e-09 Score=113.22 Aligned_cols=190 Identities=16% Similarity=0.241 Sum_probs=148.3
Q ss_pred eEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEE--------------------cCC
Q 001160 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW--------------------GPD 419 (1134)
Q Consensus 360 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~--------------------spd 419 (1134)
.++|..+.||.++|||+.+++...... + ...-++...+..| +.|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~-------------p---~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~ 69 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFA-------------P---IASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLD 69 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeec-------------c---chhccCcceeEEEEEEeccchHHHHhHHHHhhccCC
Confidence 478888999999999999886543210 0 0011223333333 224
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCC
Q 001160 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1134)
Q Consensus 420 g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1134)
-..++-|...|.|.+|++..|+.-... .-..|.++|.++.++.+-. .|.+++.|+.+..|+..+++.++.+......
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~-st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKL-STDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKEQKPL 146 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEE-ecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeeccCCCc
Confidence 457888889999999999988754422 2346999999999998888 8999999999999999999999999999999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCC-----CCEEEEEeeCCCCCCcEEEEeC
Q 001160 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD-----GTRLFSCGTSKEGESHLVEWNE 574 (1134)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~~~~~~~~i~~wd~ 574 (1134)
+.+++++|+ |..+++++ ++|++||+++.+....+.+|.++|.+++|..+ |.++++... .+.-+.+|-.
T Consensus 147 ~~sl~is~D--~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~---~~r~i~~w~v 219 (541)
T KOG4547|consen 147 VSSLCISPD--GKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA---AERGITVWVV 219 (541)
T ss_pred cceEEEcCC--CCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc---cccceeEEEE
Confidence 999999876 58888876 68999999999999999999999999999887 788876542 3444777765
Q ss_pred C
Q 001160 575 S 575 (1134)
Q Consensus 575 ~ 575 (1134)
.
T Consensus 220 ~ 220 (541)
T KOG4547|consen 220 E 220 (541)
T ss_pred E
Confidence 4
No 273
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.15 E-value=6.2e-08 Score=109.95 Aligned_cols=145 Identities=12% Similarity=0.042 Sum_probs=96.2
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEE
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1134)
.++.++.++.|..+|..+|+.+..+............ ++..++.++.++.+..+|..+++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 5788888999999999999988766543322222222 336788889999999999998888776554332211112
Q ss_pred ECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcce-----EEEEEeCCCCEEEEEeCCCeEEEEECCCCeeE
Q 001160 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-----GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1134)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1134)
. .+..++.+. .++.++.||.++|+.+..+..... .+ .+.... +..++.+..++.+..+|..+|+.+
T Consensus 143 v--~~~~v~v~~----~~g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 143 V--ANGLVVVRT----NDGRLTALDAATGERLWTYSRVTP-ALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred E--ECCEEEEEC----CCCeEEEEEcCCCceeeEEccCCC-ceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEe
Confidence 2 234555554 377899999999998877654332 11 111122 246777888899999999888765
Q ss_pred EEE
Q 001160 624 TTV 626 (1134)
Q Consensus 624 ~~~ 626 (1134)
...
T Consensus 214 W~~ 216 (377)
T TIGR03300 214 WEQ 216 (377)
T ss_pred eee
Confidence 543
No 274
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.14 E-value=1.4e-09 Score=108.73 Aligned_cols=211 Identities=15% Similarity=0.244 Sum_probs=137.2
Q ss_pred EEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC-CCeeeEEec-CCCCCeEEEEeeccCCccEEEEEecCCeEEE
Q 001160 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1134)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~-~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~ 525 (1134)
.++||.+.|++...-|-.. -+++.+.|.+++||--. .++.-..+. ....+++++.+.+.. ..|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~--~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES--RRLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc--eEEEEEEecceEEE
Confidence 5678999999888888777 68999999999999633 344333332 234567777776544 78899999999988
Q ss_pred EEcc----CCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEe-CCCCeeEEEecCccCcceEEEEEeCCC
Q 001160 526 WLYD----YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN-ESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1134)
Q Consensus 526 wd~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 600 (1134)
+.+. ..........|...+..+.|+-...++++++. |..+ .|- .+.+..+..+.... .-.++.+.-.
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~----dk~~-~~hc~e~~~~lg~Y~~~~--~~t~~~~d~~- 166 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK----DKQF-AWHCTESGNRLGGYNFET--PASALQFDAL- 166 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc----ccce-EEEeeccCCcccceEeec--cCCCCceeeE-
Confidence 8654 33344456678889999999999999999875 3223 333 23333222211110 0011111111
Q ss_pred CEEEEEeCCCeEEEEECC--CCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcC
Q 001160 601 NRFLAAGDEFQIKFWDMD--NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673 (1134)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 673 (1134)
+.+.|...|.|.+-.+. .-.++.++.++ ...+.+++|.+....|.+|..|..+.+||+..++.....+.+
T Consensus 167 -~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g 238 (404)
T KOG1409|consen 167 -YAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG 238 (404)
T ss_pred -EEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc
Confidence 44445556666655443 34455566555 568999999999999999999999999998665333333333
No 275
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.14 E-value=3.8e-10 Score=108.66 Aligned_cols=168 Identities=18% Similarity=0.253 Sum_probs=122.8
Q ss_pred chHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc---------HHHHHHHhhcccHHHHHHHhcCcccccccchhhHHHH
Q 001160 4 LSRELVFLILQFLDEEKFKETVHKLEQESGFFFN---------MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFF 74 (1134)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~ 74 (1134)
..+|+.|||+.||-..||.++|+.+.+|+|+..+ -.+.|.+|..|+-++|+..+.+|.+..-.. ...+.|
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~-n~~l~F 103 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDT-NRELFF 103 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHcc-chhHHH
Confidence 4678999999999999999999999999999882 457889999999999999999885432222 223899
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCcc---chhhhccCCCchhHHHHHHHHHHhhc
Q 001160 75 EIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFR---QNEQLSKYGDTKSARNIMLVELKKLI 151 (1134)
Q Consensus 75 ~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~---~~~~~~~~~~~~~~r~~l~~~l~~~~ 151 (1134)
.+.+|+++|++..+...+|+.|+|.++.|...-++..++.|...+..--++ ..+...-+ ....|.++...+.+.|
T Consensus 104 ~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~--~~s~R~kvA~~vN~ai 181 (228)
T KOG2659|consen 104 HLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELL--SQSLRQKVASEVNSAI 181 (228)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHH--HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999777777777777655432222 11111000 2344777777766665
Q ss_pred ccCccccccCCCCCCchhHHHHHHHHHHHHH
Q 001160 152 EANPLFRDKLSFPSFKSSRLRTLINQSLNWQ 182 (1134)
Q Consensus 152 ~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~Q 182 (1134)
-...- . --..+|..||+.-+..|
T Consensus 182 L~~~~---~-----~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 182 LASQE---H-----ESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHhc---c-----cccchHHHHHHHHHHHH
Confidence 33111 0 01457888886555555
No 276
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.13 E-value=5.7e-09 Score=102.39 Aligned_cols=252 Identities=14% Similarity=0.100 Sum_probs=162.4
Q ss_pred CCCeeEEEEec---CCCeEEEEEeCCCcEEEEEccCcccccc-ccceeeccccccccccccccccCCcCeEEEEEcCCCC
Q 001160 346 GSNVMSMDFHP---QQQTILLVGTNVGDISLWEVGSRERLAH-KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1134)
Q Consensus 346 ~~~V~~v~~sp---dg~~llasg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~ 421 (1134)
...+..+.|.. +|...++-+..+|.|.++.....+.... +.+.. ..-......++.|++.+.
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~--------------~ki~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS--------------KKISVVEALSLDISTSGT 134 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch--------------hhhhheeeeEEEeeccCc
Confidence 34566667753 4443556667788999987654332211 00000 000111355788999999
Q ss_pred EEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC-CCeeeEE-ecCCCCC
Q 001160 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYT-FEGHEAP 499 (1134)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~-~~~~~~~-~~~h~~~ 499 (1134)
.++++..+|.+.+-+.... .+.....+++|.-.++...|+..... ++.+|++|+.+..||++ .++.+.. .+-|...
T Consensus 135 ~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEM-VLEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEeccee-eeeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 9999999999985554432 23334477899999999999877665 89999999999999998 4444443 5568999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCC--EEEEEeeCCCCCCcEEEEeCCCC
Q 001160 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT--RLFSCGTSKEGESHLVEWNESEG 577 (1134)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~i~~wd~~~~ 577 (1134)
|.+|.-+|. ...++++|+.|-.|++||.++......-....+.|..+.++|.-. .+++|-.+ | .++.+...+
T Consensus 213 V~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~--G---~ki~~~~~~ 286 (339)
T KOG0280|consen 213 VVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHN--G---AKILDSSDK 286 (339)
T ss_pred eEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhc--C---ceEEEeccc
Confidence 999987765 347999999999999999997776665555668899999999543 34444321 1 444444432
Q ss_pred --e---eEEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEE-EEECCCC
Q 001160 578 --A---IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIK-FWDMDNM 620 (1134)
Q Consensus 578 --~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~-iwd~~~~ 620 (1134)
+ .....+.|.. -...-.|......+++++ .|+.++ +|-.-++
T Consensus 287 ~~e~~~~~~s~~~hdS-l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 287 VLEFQIVLPSDKIHDS-LCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ccchheeeeccccccc-eeeccccccccceeeeeeccccceeeeeeeccC
Confidence 2 2233444443 333334433335577765 566644 6654443
No 277
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.11 E-value=8.5e-09 Score=101.22 Aligned_cols=198 Identities=13% Similarity=0.115 Sum_probs=138.2
Q ss_pred eEEEEeccCCCEEEEEe-CCeEEEEECCCCeEE--EEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcC-CceEEE
Q 001160 843 AACIALSKNDSYVMSAS-GGKVSLFNMMTFKVM--TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVKT 918 (1134)
Q Consensus 843 i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~--~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~-~~~~~~ 918 (1134)
..++.|++.+..++++. +|.+.+-+....... +..+.|.-++....|+..+.+++.+|++|+.+.-||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 46788889898888886 798886666555443 47889999999999998788899999999999999998 455555
Q ss_pred E-ecCcccceEEEEEec-CCCEEEEEcCCCcEEEEeCCC-cccccceeeecCCCCCCCCcCceEEEECCCC--cEEEEEE
Q 001160 919 K-LKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDK-WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ--THLLVVH 993 (1134)
Q Consensus 919 ~-l~~h~~~i~~l~~s~-d~~~l~s~~~D~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg--~~l~~~~ 993 (1134)
. .+-|...|.++.-+| ++.+++||+-|..|++||..+ ++.+. .... .++|..+..+|-- +.|+++.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~----~~~v-----~GGVWRi~~~p~~~~~lL~~CM 274 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF----KAKV-----GGGVWRIKHHPEIFHRLLAACM 274 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc----cCcc-----ccceEEEEecchhhhHHHHHHH
Confidence 4 567889999998876 578999999999999999985 23211 1111 1689999999864 3455565
Q ss_pred CCeEEEEeCCCccee---ccCCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEE-EEeCCCc
Q 001160 994 ESQISVYDSKLECSR---SWSPKDALPAPISSAIYSCDGLLVYAGF-CDGAIG-VFDAETL 1049 (1134)
Q Consensus 994 d~~v~vwd~~~~~~~---~~~~~~~h~~~v~~v~~s~dg~~l~~~~-~dg~I~-vwd~~~~ 1049 (1134)
-+..+|-+.+.+... .+.....|.+-+..-.|.....+|||++ .|+.++ +|-.-++
T Consensus 275 h~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 275 HNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred hcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 555666666222222 3333444554444455533345678754 566644 7755544
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.10 E-value=6.2e-08 Score=121.34 Aligned_cols=257 Identities=14% Similarity=0.165 Sum_probs=161.6
Q ss_pred EEEEeccCCCEEEEE-e-CCeEEEEECCCCeEEEEecC--C------------CCceEEEEEcCCCCcEEEEE-eCCCcE
Q 001160 844 ACIALSKNDSYVMSA-S-GGKVSLFNMMTFKVMTMFMS--P------------PPAATFLAFHPQDNNIIAIG-MEDSSV 906 (1134)
Q Consensus 844 ~~~~~s~dg~~la~~-s-dg~i~vwd~~~~~~~~~~~~--~------------~~~i~~l~~s~~~~~~lasg-~~dg~i 906 (1134)
..+++++++..+.++ . ++.|++||... +.+..+.+ . -.....+++++ +++.|.++ ..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 568898865544444 4 68899999864 44444332 1 12357899998 66655444 456789
Q ss_pred EEEEcCCceEEEEecCc-----------------ccceEEEEEec-CCCEEEEEcCCCcEEEEeCCCccccccee---ee
Q 001160 907 QIYNVRVDEVKTKLKGH-----------------QNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSRF---IQ 965 (1134)
Q Consensus 907 ~iwd~~~~~~~~~l~~h-----------------~~~i~~l~~s~-d~~~l~s~~~D~~i~iWd~~~~~~~~~~~---~~ 965 (1134)
+++|..++.. .++.+- -..-..++|+| ++.++++.+.++.|++||..++......- ..
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999877653 333210 11236799999 56777888888999999998765321000 00
Q ss_pred cCCCCC---CCCcCceEEEECCCCcEEEE--EECCeEEEEeCCCcceeccCC--------------CC-----CCCCCeE
Q 001160 966 APAGRQ---SPLVGETKVQFHNDQTHLLV--VHESQISVYDSKLECSRSWSP--------------KD-----ALPAPIS 1021 (1134)
Q Consensus 966 ~~~~~~---~~~~~v~~~~fspdg~~l~~--~~d~~v~vwd~~~~~~~~~~~--------------~~-----~h~~~v~ 1021 (1134)
...+.. .....+..++|+|||++|++ ..++.|++||++......... .. .....-.
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 001110 11135678999999986665 357899999984322211110 00 0112346
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCccc-cccc--ccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEe
Q 001160 1022 SAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAY-IPTY--AVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1098 (1134)
Q Consensus 1022 ~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~ 1098 (1134)
+++|+++|.++++-+.++.|++||..++........... ...+ ....-..|..+++++ +|+++++.+.+++|++|+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 899999999888888999999999998765533211000 0000 011223677899998 789999999999999999
Q ss_pred cCCCcc
Q 001160 1099 PSDAEL 1104 (1134)
Q Consensus 1099 ~~~~~~ 1104 (1134)
+.+++.
T Consensus 887 ~~~~~~ 892 (1057)
T PLN02919 887 LNKGEA 892 (1057)
T ss_pred CCCCcc
Confidence 988763
No 279
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.07 E-value=1.2e-09 Score=119.46 Aligned_cols=285 Identities=15% Similarity=0.218 Sum_probs=195.6
Q ss_pred ccCCcceeEeeCCCCCCccccCcc-------ccceEEEEecCC--CCeeEEEEecCCC-eEEEEEeCCCcEEEEEccCcc
Q 001160 311 RTGQSDEVSFAGVAHTPNVYSQDD-------LTKTVVRTLNQG--SNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRE 380 (1134)
Q Consensus 311 ~~~~~~~v~~s~~g~~~~~~~~~~-------~~~~~~~~l~h~--~~V~~v~~spdg~-~llasg~~dg~i~iwd~~~~~ 380 (1134)
-.+++..+..+|-|+.++..+..+ .++.+.+-+.|- =.|-.+.|||... -+-++......-.+|++....
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 345788899999998887765533 467777777763 3577888988653 234455556777889887543
Q ss_pred ccccccceeeccccccccccccccccCCcCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEE
Q 001160 381 RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDI 459 (1134)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd-g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l 459 (1134)
.-. ...++.+|+..|+.+.|.|. ...+|+++.|..+..||+.+.... ...+..-......|
T Consensus 103 ~~a----------------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p--~ys~~~w~s~asqV 164 (1081)
T KOG0309|consen 103 SNA----------------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP--FYSTSSWRSAASQV 164 (1081)
T ss_pred ccc----------------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc--eeeeecccccCcee
Confidence 221 11236789999999999995 568999999999999999876432 22333444567789
Q ss_pred EEecCCCcEEEEEEcCCCcEEEEECCCC-eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe-
Q 001160 460 AFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY- 537 (1134)
Q Consensus 460 ~~s~d~~~~~l~sg~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~- 537 (1134)
+|+.... .+.+.+..+.|.+||++.| .++..+++|...|+.+.|..... ..+.+.+.|++|+.||.+........
T Consensus 165 kwnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~ 241 (1081)
T KOG0309|consen 165 KWNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRT 241 (1081)
T ss_pred eecccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeeccccccccccee
Confidence 9987666 4566677889999999875 56788999999999998865433 57889999999999999865543322
Q ss_pred cCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEE---------EeCCC-CeeEEEecCccCcceEEEEEeCCC-------
Q 001160 538 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE---------WNESE-GAIKRTYSGFRKRSLGVVQFDTTR------- 600 (1134)
Q Consensus 538 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~---------wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~------- 600 (1134)
.....+|..-.+.|-|+-.+.--.. |+..+.+ |+..+ .+++.+|.||.+ .|....|-..+
T Consensus 242 vtt~~piw~~r~~Pfg~g~~~mp~~--G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d 318 (1081)
T KOG0309|consen 242 VTTNFPIWRGRYLPFGEGYCIMPMV--GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYD 318 (1081)
T ss_pred ccccCcceeccccccCceeEecccc--CCeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCC
Confidence 2234466666777755543332211 1223333 44333 468899999987 44433332211
Q ss_pred ---CEEEEEeCCCeEEEEECCC
Q 001160 601 ---NRFLAAGDEFQIKFWDMDN 619 (1134)
Q Consensus 601 ---~~l~~~~~dg~i~iwd~~~ 619 (1134)
-.|++-+.|..+++|-+.+
T Consensus 319 ~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 319 SRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccceeEEEeecCCceEeeeccH
Confidence 2689999999999998864
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.04 E-value=8.8e-08 Score=120.02 Aligned_cols=261 Identities=10% Similarity=0.062 Sum_probs=163.0
Q ss_pred EEEEEecC-CcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCE
Q 001160 776 VRLIYTNS-GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 854 (1134)
Q Consensus 776 ~~~~~s~~-g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~ 854 (1134)
..++++++ +..+++-..++.|+++|........-+. .. . .....|..-. .+ -.....+++++++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~---~g-~--~G~~dG~~~~------a~-f~~P~GIavd~~gn~ 637 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS---TG-E--EGLRDGSFED------AT-FNRPQGLAYNAKKNL 637 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc---CC-C--cCCCCCchhc------cc-cCCCcEEEEeCCCCE
Confidence 46788875 5566666677889998864321100000 00 0 0000111000 01 234578999999887
Q ss_pred EEEEe--CCeEEEEECCCCeEEEEecCC-----------------CCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce
Q 001160 855 VMSAS--GGKVSLFNMMTFKVMTMFMSP-----------------PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915 (1134)
Q Consensus 855 la~~s--dg~i~vwd~~~~~~~~~~~~~-----------------~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~ 915 (1134)
|.++. ++.|+++|..++.. .++.+- -..-..++|+|+++.++++.+.++.|++||..++.
T Consensus 638 LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 638 LYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 77775 57899999977653 333210 11236799999566677777788999999988775
Q ss_pred EEEEecC---------c------ccceEEEEEecCCC-EEEEEcCCCcEEEEeCCCcccccce--------eeecC---C
Q 001160 916 VKTKLKG---------H------QNRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSR--------FIQAP---A 968 (1134)
Q Consensus 916 ~~~~l~~---------h------~~~i~~l~~s~d~~-~l~s~~~D~~i~iWd~~~~~~~~~~--------~~~~~---~ 968 (1134)
.. .+.+ + -....+|+++||++ ++++-+.++.|++||+.++...... .+... .
T Consensus 717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 42 2211 1 12346799999998 4555667789999999876521100 00000 0
Q ss_pred C--CCCCCcCceEEEECCCCcEEEE-EECCeEEEEeCCCcceeccCCC-----------CCCCCCeEEEEEccCCCEEEE
Q 001160 969 G--RQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPK-----------DALPAPISSAIYSCDGLLVYA 1034 (1134)
Q Consensus 969 ~--~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~~~~~~~~~~~~-----------~~h~~~v~~v~~s~dg~~l~~ 1034 (1134)
+ ..........++|+++|..+++ ..+++|++||.++..+..+... .+.......++++++|+++++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 0 0001124578999999997777 5788999999955554433221 112346788999999999888
Q ss_pred EecCCcEEEEeCCCcce
Q 001160 1035 GFCDGAIGVFDAETLRF 1051 (1134)
Q Consensus 1035 ~~~dg~I~vwd~~~~~~ 1051 (1134)
-+.+++|++||+.+++.
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88999999999999865
No 281
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.99 E-value=1.4e-07 Score=106.99 Aligned_cols=286 Identities=12% Similarity=0.100 Sum_probs=171.2
Q ss_pred cccCccccceEEEEecCCCCee-EEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccC
Q 001160 329 VYSQDDLTKTVVRTLNQGSNVM-SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA 407 (1134)
Q Consensus 329 ~~~~~~~~~~~~~~l~h~~~V~-~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 407 (1134)
++.+|..+++.+-...-...+. .+. .++. .++.++.+|.+..+|..+|+.+.+..+
T Consensus 77 v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~-~v~v~~~~g~l~ald~~tG~~~W~~~~-------------------- 133 (377)
T TIGR03300 77 VVALDAETGKRLWRVDLDERLSGGVG--ADGG-LVFVGTEKGEVIALDAEDGKELWRAKL-------------------- 133 (377)
T ss_pred EEEEEccCCcEeeeecCCCCcccceE--EcCC-EEEEEcCCCEEEEEECCCCcEeeeecc--------------------
Confidence 3444555566655554322322 222 2344 355678899999999999987643111
Q ss_pred CcCeEE-EEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCe-----eEEEEecCCCcEEEEEEcCCCcEEE
Q 001160 408 AISVNR-CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGV-----NDIAFAHPNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 408 ~~~V~~-i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v-----~~l~~s~d~~~~~l~sg~~d~~i~i 481 (1134)
.+.+.+ ... .+..++.++.++.+..||.++|+.+... ......+ .+.... + . .++.+..++.+..
T Consensus 134 ~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~---~~~~~~~~~~~~~sp~~~-~-~--~v~~~~~~g~v~a 204 (377)
T TIGR03300 134 SSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTY---SRVTPALTLRGSASPVIA-D-G--GVLVGFAGGKLVA 204 (377)
T ss_pred CceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEE---ccCCCceeecCCCCCEEE-C-C--EEEEECCCCEEEE
Confidence 111111 111 3456777888999999999998765422 1111110 111221 2 3 5677888999999
Q ss_pred EECCCCeeeEEecCCCC-------CeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCC
Q 001160 482 WDVVAGRKQYTFEGHEA-------PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1134)
Q Consensus 482 wd~~~~~~~~~~~~h~~-------~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1134)
+|+.+|+.+........ ....+.-+|.-.+..++.++.+|.+..||..+++......... ..... .++.
T Consensus 205 ld~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~--~~~p~--~~~~ 280 (377)
T TIGR03300 205 LDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS--YQGPA--VDDN 280 (377)
T ss_pred EEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC--ccCce--EeCC
Confidence 99999987654331100 0001111111123578888899999999999887766554221 11122 3456
Q ss_pred EEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCC
Q 001160 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1134)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1134)
.++.++ .++.++.+|..+|+.+............+... .+..+++++.+|.|+++|..+++.+..+..+... .
T Consensus 281 ~vyv~~----~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~-~ 353 (377)
T TIGR03300 281 RLYVTD----ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSG-I 353 (377)
T ss_pred EEEEEC----CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCc-c
Confidence 666664 37889999999998876653322212222222 3568999999999999999999999888765421 1
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEE
Q 001160 635 SPRLRFNKEGSLLAVTTSDNGIKIL 659 (1134)
Q Consensus 635 v~~~~~s~d~~~l~~~~~dg~i~iw 659 (1134)
....++. +..|+.++.||.|..|
T Consensus 354 ~~sp~~~--~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 354 ASPPVVV--GDGLLVQTRDGDLYAF 376 (377)
T ss_pred ccCCEEE--CCEEEEEeCCceEEEe
Confidence 1222222 3458889999998765
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=5.5e-09 Score=110.31 Aligned_cols=246 Identities=14% Similarity=0.196 Sum_probs=171.5
Q ss_pred cccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-cc---ceeeEEecccCCeeEEEEecCCCcEEEEEEcCCC
Q 001160 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-EL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1134)
Q Consensus 402 ~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~-~~---~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~ 477 (1134)
..+.||...|..++--.+.+-+++++.|.+|++|.++... .+ ....+++.|..+|.++.|..+.+ +++++ |+
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~ 804 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DG 804 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cC
Confidence 3478999999999888888899999999999999987532 12 24457789999999999999988 66655 88
Q ss_pred cEEEEECCCCeeeEEec--CCCCCeEEEEeeccCCccEEEEE-ecCCeEEEEEccCCCceeEe-----cCCCCcEEEEEE
Q 001160 478 MIKVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDY-----DAPGNWCTMMAY 549 (1134)
Q Consensus 478 ~i~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~-----~~~~~~v~~~~~ 549 (1134)
.|++||.--|+.+..+. ...+.+..+...++-+...++.+ +...+|+++|.+..+-...+ .+....+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999988887765332 12223333333344343555555 78899999999887765543 334557899999
Q ss_pred CCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEE-EECCCCeeEEEEeC
Q 001160 550 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF-WDMDNMNMLTTVDA 628 (1134)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~ 628 (1134)
.+.|++++++-. .|.|.+.|.++|+.+..++...- ....++ .|..+.++....|.++.+ |..-.+........
T Consensus 885 a~~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kp 958 (1034)
T KOG4190|consen 885 ADKGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKP 958 (1034)
T ss_pred ccCcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence 999999998764 78899999999998887664322 121222 345566777777888888 98877765554443
Q ss_pred CCCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 629 ~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
+.. +. --.-.-|.-++++...+.+.+|.-
T Consensus 959 ppe--pa--hflqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 959 PPE--PA--HFLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred CCc--ch--hhhhccCceeEEeccCcEEEEEec
Confidence 211 10 001123667777777778888853
No 283
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=2.5e-07 Score=104.27 Aligned_cols=217 Identities=12% Similarity=0.020 Sum_probs=131.8
Q ss_pred CCccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeC---CCcEEEEEccCccccccccceeecccccccccccc
Q 001160 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN---VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1134)
Q Consensus 326 ~~~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1134)
...++..|....+....+.. +.+....|||||+++++..+. +..|.++|+.+++...
T Consensus 168 ~~~l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~------------------- 227 (419)
T PRK04043 168 KSNIVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK------------------- 227 (419)
T ss_pred cceEEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-------------------
Confidence 34445544433333333334 388899999999864443333 3478889998876432
Q ss_pred ccccCCcCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCC--
Q 001160 403 LLNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-- 477 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~~las~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~-- 477 (1134)
+....+.+...+|||||+.|+.... +..|.++|+.+++. + .+..+........|+|||+.+++.+ ...+
T Consensus 228 -lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~S-dr~g~~ 301 (419)
T PRK04043 228 -IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVS-DRLGYP 301 (419)
T ss_pred -EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEE-CCCCCc
Confidence 2234455667889999998876532 45788888877653 2 2333333344568999999643333 2223
Q ss_pred cEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecC---------CeEEEEEccCCCceeEecCCCCcEEEEE
Q 001160 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---------GKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1134)
Q Consensus 478 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d---------~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1134)
.|.+.|+.+++..+.... .. ....|+|++ +.++..+.. ..|.+.|++++.... +... .......
T Consensus 302 ~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG--~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~ 374 (419)
T PRK04043 302 NIFMKKLNSGSVEQVVFH-GK--NNSSVSTYK--NYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPR 374 (419)
T ss_pred eEEEEECCCCCeEeCccC-CC--cCceECCCC--CEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeE
Confidence 688889888776433221 11 123676654 666665543 367788887765433 3322 2334688
Q ss_pred ECCCCCEEEEEeeCCCCCCcEEEEeCCC
Q 001160 549 YSADGTRLFSCGTSKEGESHLVEWNESE 576 (1134)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1134)
|+|||+.++..... .+...+.+.++..
T Consensus 375 ~SPDG~~I~f~~~~-~~~~~L~~~~l~g 401 (419)
T PRK04043 375 FSSDGGSIMFIKYL-GNQSALGIIRLNY 401 (419)
T ss_pred ECCCCCEEEEEEcc-CCcEEEEEEecCC
Confidence 99999999877643 2344577777654
No 284
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.91 E-value=5.2e-09 Score=125.59 Aligned_cols=200 Identities=14% Similarity=0.228 Sum_probs=161.4
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEEC
Q 001160 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~ 484 (1134)
+.+-..|.++.=+|...+.++|+.||.|++|....++.+....+. | ...|+.+.|+.+|. .+..+..||.+.+|.+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g-~s~vtr~~f~~qGn--k~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-G-NSRVTRSRFNHQGN--KFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-C-cchhhhhhhcccCC--ceeeeccCCceeeccc
Confidence 345567888888999999999999999999999988877654442 3 38899999999999 6888888999999996
Q ss_pred CCCeeeEEecCCCCCeEEEEeeccCCccEEEEEe---cCCeEEEEEccCCCce-eEecCCCCcEEEEEECCCCCEEEEEe
Q 001160 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGSR-VDYDAPGNWCTMMAYSADGTRLFSCG 560 (1134)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1134)
. .++....+.|........|.. ..+++++ .++.+.+||....... ..-..|.+.++++++.|....+++|+
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred C-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 5 666677788988888888765 3566653 5788999997644332 23377889999999999999999998
Q ss_pred eCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeC
Q 001160 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1134)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1134)
. +|.|++||++..+.+++++. +. ...++++|+..|.++||++.....+..+..
T Consensus 2356 r----~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 R----KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred C----cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 5 77899999998887777664 33 457899999999999999998877777653
No 285
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=3.4e-09 Score=111.86 Aligned_cols=217 Identities=17% Similarity=0.245 Sum_probs=153.3
Q ss_pred EEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC-------ceEEEEecCcccceEEEEEecCCCEEEEEcCCC
Q 001160 874 MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-------DEVKTKLKGHQNRITGLAFSPTLNALVSSGADA 946 (1134)
Q Consensus 874 ~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~-------~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~ 946 (1134)
+..+.+|...|..++--. +.+-+++++.|++|++|.++. ..+..+++.|..+|.++.|-.|-++++++ |+
T Consensus 728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 456788999999887666 666778899999999999863 24677889999999999999999988876 78
Q ss_pred cEEEEeCCCcccccceeeecCCCCCCCCcCceEEEE--CCCCcEEEEE--ECCeEEEEeC-CCcceecc--CCCCCCCCC
Q 001160 947 QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF--HNDQTHLLVV--HESQISVYDS-KLECSRSW--SPKDALPAP 1019 (1134)
Q Consensus 947 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f--spdg~~l~~~--~d~~v~vwd~-~~~~~~~~--~~~~~h~~~ 1019 (1134)
.|.+||---+..+....-....+ .+..+.- +-|...++++ ...+|+++|. ...-...+ ....+-.+-
T Consensus 805 giHlWDPFigr~Laq~~dapk~~------a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~ 878 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEG------AGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL 878 (1034)
T ss_pred cceeecccccchhHhhhcCcccC------CCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence 89999987766543221111111 1222222 2244444443 5789999998 33332222 222333577
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEE-Ee
Q 001160 1020 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHV-VE 1098 (1134)
Q Consensus 1020 v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~v-W~ 1098 (1134)
+.+++..+.|++++++-.+|+|.+.|..+|+.+..+++.. ...+-++ -|.| +.|+....|.++.| |-
T Consensus 879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme----------cdllqla-apsd-q~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 879 TRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME----------CDLLQLA-APSD-QALAQSALDHSLAVNWH 946 (1034)
T ss_pred eeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc----------chhhhhc-Cchh-HHHHhhcccceeEeeeh
Confidence 8999999999999999999999999999999887766442 1111222 2434 68888888999999 98
Q ss_pred cCCCccccCCCCC
Q 001160 1099 PSDAELKWGGTPS 1111 (1134)
Q Consensus 1099 ~~~~~~~~~~~~~ 1111 (1134)
..++--.+...+|
T Consensus 947 aldgimh~q~kpp 959 (1034)
T KOG4190|consen 947 ALDGIMHLQDKPP 959 (1034)
T ss_pred hcCCeeeeccCCC
Confidence 8877765655443
No 286
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.90 E-value=6.4e-09 Score=124.85 Aligned_cols=214 Identities=16% Similarity=0.172 Sum_probs=156.6
Q ss_pred CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEec-CcccceEEEEEecCCCE
Q 001160 860 GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-GHQNRITGLAFSPTLNA 938 (1134)
Q Consensus 860 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~-~h~~~i~~l~~s~d~~~ 938 (1134)
++...-|..+.+.. .++.+-..|.++.=+| ...+.++|+.||.|++|....++.+..++ +-...|+.+.|+..|+-
T Consensus 2189 ~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk 2265 (2439)
T KOG1064|consen 2189 PWLGSTQTSRGASV--MIKHPVENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNK 2265 (2439)
T ss_pred Cccccceeccccee--EeecccCceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCc
Confidence 34444444432222 2333566788888899 67788899999999999998887776664 23378999999999999
Q ss_pred EEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-E---ECCeEEEEeCCCcceeccCCCC
Q 001160 939 LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-V---HESQISVYDSKLECSRSWSPKD 1014 (1134)
Q Consensus 939 l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~---~d~~v~vwd~~~~~~~~~~~~~ 1014 (1134)
...+..||.+.+|.+... ....-..|. .....+.|-. ..+++ + .++.+.+||........+. +.
T Consensus 2266 ~~i~d~dg~l~l~q~~pk------~~~s~qchn---k~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v-~~ 2333 (2439)
T KOG1064|consen 2266 FGIVDGDGDLSLWQASPK------PYTSWQCHN---KALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV-HT 2333 (2439)
T ss_pred eeeeccCCceeecccCCc------ceeccccCC---ccccceeeee--hhhhccccCCCCCcccchhcccCccccee-ee
Confidence 999999999999998731 222223333 2445666655 55565 2 3578999998322222222 37
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcE
Q 001160 1015 ALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAV 1094 (1134)
Q Consensus 1015 ~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v 1094 (1134)
.|.+.++++++-|..++|++|+.+|.|++||+...+++++++. ++ ...++++|+..|.+
T Consensus 2334 ~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-------------------~~--~~~~f~~~ss~g~i 2392 (2439)
T KOG1064|consen 2334 CHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-------------------LD--TREYFVTGSSEGNI 2392 (2439)
T ss_pred ecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-------------------hh--hhheeeccCcccce
Confidence 7899999999999999999999999999999999888877652 11 23699999999999
Q ss_pred EEEecCCCccccCCC
Q 001160 1095 HVVEPSDAELKWGGT 1109 (1134)
Q Consensus 1095 ~vW~~~~~~~~~~~~ 1109 (1134)
+||+++........|
T Consensus 2393 kIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2393 KIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEEEccccchhhcCc
Confidence 999999887544443
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.86 E-value=1.3e-06 Score=86.95 Aligned_cols=209 Identities=15% Similarity=0.179 Sum_probs=136.8
Q ss_pred EEeccCCCEEEEEeCCeEEEEECCCC--eEEEEe---cCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEe
Q 001160 846 IALSKNDSYVMSASGGKVSLFNMMTF--KVMTMF---MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 920 (1134)
Q Consensus 846 ~~~s~dg~~la~~sdg~i~vwd~~~~--~~~~~~---~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l 920 (1134)
++.+.||++||+.-|..|.|-..++. ..+.+. +.....=+-++||| |+.+||.+...|+|+++|+...++ ..+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FVI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EEc
Confidence 67889999999999999988876652 222222 22334467899999 999999999999999999875443 333
Q ss_pred cC-------cccceEEEEEecCC------CEEEEEcCCCcEEEEeCCCcc--cccceeeecCCCCCCCCcCceEEEECCC
Q 001160 921 KG-------HQNRITGLAFSPTL------NALVSSGADAQLCMWSIDKWE--KLKSRFIQAPAGRQSPLVGETKVQFHND 985 (1134)
Q Consensus 921 ~~-------h~~~i~~l~~s~d~------~~l~s~~~D~~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~fspd 985 (1134)
.. -...|.+|.|-+-. ..|+...-+|.++=+-+..+. .-+.........|. ..+|.++.++|.
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~y--p~Gi~~~vy~p~ 158 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHY--PHGINSAVYHPK 158 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccC--CCceeEEEEcCC
Confidence 22 12457777775421 145555667777766654321 11111111111121 157999999999
Q ss_pred CcEEEEEE-----C-------CeEEEEeC-CC-----------cce---------eccC------CCCCCCCCeEEEEEc
Q 001160 986 QTHLLVVH-----E-------SQISVYDS-KL-----------ECS---------RSWS------PKDALPAPISSAIYS 1026 (1134)
Q Consensus 986 g~~l~~~~-----d-------~~v~vwd~-~~-----------~~~---------~~~~------~~~~h~~~v~~v~~s 1026 (1134)
.++|++++ + -.+..|.+ +. ..+ ..+. ........|..|..|
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS 238 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS 238 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEEC
Confidence 99988842 1 13666765 11 000 0000 001125689999999
Q ss_pred cCCCEEEEEecCCcEEEEeCCCcceeeecCCc
Q 001160 1027 CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1058 (1134)
Q Consensus 1027 ~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 1058 (1134)
|||+.||+...+|.|.+|++.+..+......+
T Consensus 239 Pdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 239 PDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred CCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 99999999999999999999998888777644
No 288
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.83 E-value=1.9e-06 Score=85.71 Aligned_cols=217 Identities=17% Similarity=0.187 Sum_probs=135.3
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEEcCCc--eEEEEecCcc---cceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccc
Q 001160 887 LAFHPQDNNIIAIGMEDSSVQIYNVRVD--EVKTKLKGHQ---NRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961 (1134)
Q Consensus 887 l~~s~~~~~~lasg~~dg~i~iwd~~~~--~~~~~l~~h~---~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~ 961 (1134)
++.+. +|++||+. .|..|.|=..++. .++....... ..-..++||||+.+||.+...|+|+++|+...+....
T Consensus 3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 56667 89988855 6778888765542 2333332222 3467899999999999999999999999987543211
Q ss_pred eeeecCCCCCCCCcCceEEEECCCC-------cEEEEEECCeEEEEeC------CCcceeccCCCCCCCCCeEEEEEccC
Q 001160 962 RFIQAPAGRQSPLVGETKVQFHNDQ-------THLLVVHESQISVYDS------KLECSRSWSPKDALPAPISSAIYSCD 1028 (1134)
Q Consensus 962 ~~~~~~~~~~~~~~~v~~~~fspdg-------~~l~~~~d~~v~vwd~------~~~~~~~~~~~~~h~~~v~~v~~s~d 1028 (1134)
.......+ .....|..+.|-+-. .+|+....|.++-|-+ .......+.....+...|.++.++|.
T Consensus 81 ~p~~~~~~--d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 81 PPAMSFPG--DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred CcccccCC--ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 11010111 111456677775543 3455577887777665 11222233333445789999999999
Q ss_pred CCEEEEEecC-----------CcEEEEeCCCcceeeecCCcccc--------------cc-----cccCCCCccEEEeec
Q 001160 1029 GLLVYAGFCD-----------GAIGVFDAETLRFRCRIGPSAYI--------------PT-----YAVSNTAHPLVIAPH 1078 (1134)
Q Consensus 1029 g~~l~~~~~d-----------g~I~vwd~~~~~~~~~~~~~~~~--------------~~-----~~~~~~~~~~~~~~~ 1078 (1134)
.++|++|+.. .-+..|.+-++............ +. ..-.....+..+..+
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS 238 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS 238 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEEC
Confidence 9988777631 13777887766554432110000 00 001123455577788
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCCc--cccCC
Q 001160 1079 PSEPNQIALGMSDGAVHVVEPSDAE--LKWGG 1108 (1134)
Q Consensus 1079 ~~d~~~l~s~~~Dg~v~vW~~~~~~--~~~~~ 1108 (1134)
| ||..||+...+|+|.+|++..-. ++|.+
T Consensus 239 P-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 239 P-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred C-CCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 8 89999999999999999987544 66665
No 289
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.81 E-value=3.4e-06 Score=87.00 Aligned_cols=208 Identities=17% Similarity=0.156 Sum_probs=144.6
Q ss_pred eEEEEecc-CCCEEEEEe-CC-eEEEEECCCCeEEEEecCCCCce--EEEEEcCCCCcEEEEEeC-----CCcEEEEEcC
Q 001160 843 AACIALSK-NDSYVMSAS-GG-KVSLFNMMTFKVMTMFMSPPPAA--TFLAFHPQDNNIIAIGME-----DSSVQIYNVR 912 (1134)
Q Consensus 843 i~~~~~s~-dg~~la~~s-dg-~i~vwd~~~~~~~~~~~~~~~~i--~~l~~s~~~~~~lasg~~-----dg~i~iwd~~ 912 (1134)
.-.++.+| ++..++.+. .| ...+||..+++....+....+.- -.-.||+ ||++|.+.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECc
Confidence 34688899 566666676 45 48999999999988877554442 2578999 8999887644 3789999999
Q ss_pred -CceEEEEecCcccceEEEEEecCCCEEEEEc------------------CCCcEEEEeCCCcccccceeeecCCCCCCC
Q 001160 913 -VDEVKTKLKGHQNRITGLAFSPTLNALVSSG------------------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSP 973 (1134)
Q Consensus 913 -~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~------------------~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~ 973 (1134)
+.+.+.++..|.-.--.+.+.|||+.|+.+- .+..+.+-|..+|+.+....+... -|.
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~-~~~-- 162 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD-LHQ-- 162 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc-ccc--
Confidence 6788888988876667888999997777652 233466677777775544333211 122
Q ss_pred CcCceEEEECCCCcEEEEEEC-C-------eEEEEeCCCcceeccCCC----CCCCCCeEEEEEccCCCEEEE-EecCCc
Q 001160 974 LVGETKVQFHNDQTHLLVVHE-S-------QISVYDSKLECSRSWSPK----DALPAPISSAIYSCDGLLVYA-GFCDGA 1040 (1134)
Q Consensus 974 ~~~v~~~~fspdg~~l~~~~d-~-------~v~vwd~~~~~~~~~~~~----~~h~~~v~~v~~s~dg~~l~~-~~~dg~ 1040 (1134)
..+..+++.++|..++.... + -|-+++.... +..+... ....+.|-+|+++++|.++++ +-.-++
T Consensus 163 -lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 -LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred -cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 46899999999988777421 1 1444544211 2222111 122578999999999987754 446678
Q ss_pred EEEEeCCCcceeeecC
Q 001160 1041 IGVFDAETLRFRCRIG 1056 (1134)
Q Consensus 1041 I~vwd~~~~~~~~~~~ 1056 (1134)
+.+||..+|+.+....
T Consensus 241 ~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVP 256 (305)
T ss_pred EEEEECCCCCEeeccc
Confidence 9999999999987765
No 290
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=8.4e-07 Score=99.18 Aligned_cols=221 Identities=16% Similarity=0.162 Sum_probs=132.1
Q ss_pred EEEEEcCCCCEEEEEe----CCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001160 412 NRCVWGPDGLMLGVAF----SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1134)
Q Consensus 412 ~~i~~spdg~~las~~----~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~ 487 (1134)
+-..|+|...++|+++ ..|.|.||- ++|+.-+.. +..- .+++++|+|..- +|+.|-.-|.+.+|...+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-ccce---ehhhhccChHHH--HHhhccccceeEEEecCCc
Confidence 3456999999988875 357888875 344432211 2222 356799999876 8899999999999997776
Q ss_pred eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecC--C--CC--cEEEEEECCCCCEE-----
Q 001160 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--P--GN--WCTMMAYSADGTRL----- 556 (1134)
Q Consensus 488 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~--~~--~v~~~~~s~~~~~l----- 556 (1134)
+.-.....|..+|..+.|++++ ..++++..-|.+.+|..+-.+....... | +. ...|...++++.-+
T Consensus 92 e~htv~~th~a~i~~l~wS~~G--~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laK 169 (1416)
T KOG3617|consen 92 ETHTVVETHPAPIQGLDWSHDG--TVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAK 169 (1416)
T ss_pred eeeeeccCCCCCceeEEecCCC--CeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhh
Confidence 6655556799999999998765 8999999999999998875444332211 1 11 23455566664322
Q ss_pred -EEEeeCCCCCCcEE-EEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCC
Q 001160 557 -FSCGTSKEGESHLV-EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1134)
Q Consensus 557 -~~~~~~~~~~~~i~-~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1134)
++.+ | +.-+- .++.+.....++.. + .-.|+|..++.++.+|+|+--|- +|+..........
T Consensus 170 aaVtg---D-e~alD~~fnwk~~~a~rs~~-k--------sgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~--- 232 (1416)
T KOG3617|consen 170 AAVTG---D-ESALDEPFNWKESLAERSDE-K--------SGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE--- 232 (1416)
T ss_pred hhccC---c-hhhhcccccCccchhhcccc-c--------cCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch---
Confidence 2222 1 11121 22221111001110 1 12477888889999999988774 4455544443321
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEE
Q 001160 635 SPRLRFNKEGSLLAVTTSDNGIKIL 659 (1134)
Q Consensus 635 v~~~~~s~d~~~l~~~~~dg~i~iw 659 (1134)
..+-|.+....+++...+-.+.++
T Consensus 233 -vQmLf~~~~eai~~i~e~lr~~l~ 256 (1416)
T KOG3617|consen 233 -VQMLFMGYCEAISIIIEFLRDCLI 256 (1416)
T ss_pred -HHHHHhcccceEEEEeeeceeeEE
Confidence 234555544444444444344333
No 291
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=3.8e-09 Score=117.81 Aligned_cols=216 Identities=13% Similarity=0.202 Sum_probs=159.0
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCC-cEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-MIKVW 482 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~-~i~iw 482 (1134)
+..|...-+|++||-+.+.|+.|+..|.|+++++.+|.... ...+|..+|+.+.=+.||.. .|.+++... ...+|
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHHHh
Confidence 66788999999999999999999999999999999998766 66789999999999999994 333333333 56799
Q ss_pred ECCC-CeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe-cC---CCCcEEEEEECCCCCEEE
Q 001160 483 DVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DA---PGNWCTMMAYSADGTRLF 557 (1134)
Q Consensus 483 d~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~---~~~~v~~~~~s~~~~~l~ 557 (1134)
++.. +...++|.+ -.++.|+... +.-+.|.......+||+++.....++ .. ....-++..|+|+.++++
T Consensus 1173 ~~~s~~~~~Hsf~e----d~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDE----DKAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred ccccccCccccccc----cceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 9864 555566643 3456676543 34455555577889999998776652 22 122347888999998887
Q ss_pred EEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcce
Q 001160 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (1134)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1134)
--| .+||.+..+.++.|..... .+ .-.|+|.|..++.-++ |||+++.+.+.....-.. ..
T Consensus 1247 ndG---------vLWDvR~~~aIh~FD~ft~-~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq----c~ 1306 (1516)
T KOG1832|consen 1247 NDG---------VLWDVRIPEAIHRFDQFTD-YG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ----CA 1306 (1516)
T ss_pred eCc---------eeeeeccHHHHhhhhhhee-cc-cccccCCCceEEeech-----hhhhHHHHHHhcCccccc----eE
Confidence 532 4799998888888776543 22 3459999999988765 999999988877764432 56
Q ss_pred EEEccCCCEEEE
Q 001160 638 LRFNKEGSLLAV 649 (1134)
Q Consensus 638 ~~~s~d~~~l~~ 649 (1134)
+.|+..|..++.
T Consensus 1307 VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1307 VTFNSTGDVMYA 1318 (1516)
T ss_pred EEeccCccchhh
Confidence 788887776553
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.79 E-value=1.8e-06 Score=97.51 Aligned_cols=216 Identities=12% Similarity=0.103 Sum_probs=133.0
Q ss_pred CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEE-EEc-CCCcEEEEECCCCeeeEEecCCCCCeEEEEeec
Q 001160 430 HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV-TCG-DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1134)
Q Consensus 430 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~-sg~-~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 507 (1134)
..|.+-|.+... .+ .+... +.+....|+|||+.+.++ +-. .+..|.++|+.+|+..... ...+......|+|
T Consensus 169 ~~l~~~d~dg~~-~~---~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SP 242 (419)
T PRK04043 169 SNIVLADYTLTY-QK---VIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSK 242 (419)
T ss_pred ceEEEECCCCCc-ee---EEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECC
Confidence 355555555433 12 22222 377889999999852222 222 2467999999888764433 3455566677877
Q ss_pred cCCccEE-EEEecC--CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEec
Q 001160 508 KESIQFI-FSTAID--GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1134)
Q Consensus 508 ~~~~~~l-~s~~~d--~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1134)
++ ..+ ++.+.+ ..|.++|+..+... .+...........|+|||+.++..+. ..+...|+++|+.+++..+...
T Consensus 243 DG--~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sd-r~g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 243 DG--SKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSD-RLGYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred CC--CEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEEC-CCCCceEEEEECCCCCeEeCcc
Confidence 54 444 444444 45777787766533 33333333445689999999987763 3345579999998877644332
Q ss_pred CccCcceEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCC-
Q 001160 585 GFRKRSLGVVQFDTTRNRFLAAGDE---------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN- 654 (1134)
Q Consensus 585 ~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg- 654 (1134)
. .. . ...|+|||++++..+.. ..|++.|+.++.... +.... ......|+|||+.|+..+.++
T Consensus 319 ~-g~-~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~---~~~~p~~SPDG~~I~f~~~~~~ 390 (419)
T PRK04043 319 H-GK-N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANG---VNQFPRFSSDGGSIMFIKYLGN 390 (419)
T ss_pred C-CC-c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCC---CcCCeEECCCCCEEEEEEccCC
Confidence 2 11 1 24899999998876533 368888988876533 33221 224588999999887766532
Q ss_pred --cEEEEECCC
Q 001160 655 --GIKILANSD 663 (1134)
Q Consensus 655 --~i~iw~~~~ 663 (1134)
.+.+.++..
T Consensus 391 ~~~L~~~~l~g 401 (419)
T PRK04043 391 QSALGIIRLNY 401 (419)
T ss_pred cEEEEEEecCC
Confidence 355555543
No 293
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.77 E-value=1.6e-07 Score=103.27 Aligned_cols=302 Identities=11% Similarity=0.171 Sum_probs=192.2
Q ss_pred ccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCC--cC
Q 001160 333 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA--IS 410 (1134)
Q Consensus 333 ~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~--~~ 410 (1134)
+..+...--.++-.+++.++..+|.|+-+ |.++.-| +.+-|+...-.... .-.|. -.
T Consensus 11 ns~tf~kslsl~v~~~~~a~si~p~grdi-~lAsr~g-l~i~dld~p~~ppr-------------------~l~h~tpw~ 69 (1081)
T KOG0309|consen 11 NSPTFGKSLSLKVDGGFNAVSINPSGRDI-VLASRQG-LYIIDLDDPFTPPR-------------------WLHHITPWQ 69 (1081)
T ss_pred CCCccCceeEEEecCcccceeeccccchh-hhhhhcC-eEEEeccCCCCCce-------------------eeeccCcch
Confidence 33344444445566799999999999864 4555433 44555543221100 01122 23
Q ss_pred eEEEEEcCCC--CEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC-
Q 001160 411 VNRCVWGPDG--LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG- 487 (1134)
Q Consensus 411 V~~i~~spdg--~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~- 487 (1134)
|..+.|||.. .+-++........+|++.....-..-..+.+|...|+.+-|.|.... .+++++.|..+..||+++.
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCC
Confidence 6677888743 23344444555778998765544444567899999999999998876 8999999999999999875
Q ss_pred eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc-eeEecCCCCcEEEEEECCCC-CEEEEEeeCCCC
Q 001160 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEG 565 (1134)
Q Consensus 488 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~ 565 (1134)
.+++.+..-...-..++|+... ..+.+.+..+.|++||.+.+.. +..+.++...|+.+.|..-- ..+.+++ .
T Consensus 149 ~p~ys~~~w~s~asqVkwnyk~--p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~----~ 222 (1081)
T KOG0309|consen 149 RPFYSTSSWRSAASQVKWNYKD--PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS----N 222 (1081)
T ss_pred cceeeeecccccCceeeecccC--cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC----C
Confidence 4566666556667788888764 4555667788899999998765 44677777788888886532 2344543 4
Q ss_pred CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEE--eCCCeEEE---------EECCC-CeeEEEEeCCCCCC
Q 001160 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA--GDEFQIKF---------WDMDN-MNMLTTVDADGGLP 633 (1134)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i---------wd~~~-~~~~~~~~~~~~~~ 633 (1134)
|++|..||..............+.+|..-++.|-|.-.+.- -.+..+.+ |+..+ .+++.++.+|..
T Consensus 223 d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-- 300 (1081)
T KOG0309|consen 223 DGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-- 300 (1081)
T ss_pred CCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcch--
Confidence 88999999875433222222233356666666665433331 11223333 33332 356777777644
Q ss_pred CcceEEEccC----------CCEEEEEeCCCcEEEEECCCc
Q 001160 634 ASPRLRFNKE----------GSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 634 ~v~~~~~s~d----------~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.|....|-.. .-.|++-+.|.++++|-+.+.
T Consensus 301 ~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 301 VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 4544444332 226899999999999998754
No 294
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.75 E-value=1.3e-06 Score=85.02 Aligned_cols=176 Identities=9% Similarity=-0.044 Sum_probs=127.1
Q ss_pred EEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCc--CeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001160 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI--SVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (1134)
Q Consensus 362 lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~--~V~~i~~spdg~~las~~~dg~i~iwd~~~ 439 (1134)
+..++.|.++++.++..+.... .-|.. .+.++++|+|++++++.+....|..|.++.
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~---------------------~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~ 189 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKF---------------------AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDD 189 (344)
T ss_pred eeeccCCcceeEEEEecCcccc---------------------eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCC
Confidence 4456788888888887654321 11332 388999999999999999999999999987
Q ss_pred CCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeE-----EecCCCCCeEEEEeeccCCccEE
Q 001160 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-----TFEGHEAPVYSVCPHHKESIQFI 514 (1134)
Q Consensus 440 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~-----~~~~h~~~v~~i~~~~~~~~~~l 514 (1134)
..............+.-.+..|+.... .+|++..||++.|||++.-.... +-..|.+.+..+.|++.+.-++|
T Consensus 190 ~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLL 267 (344)
T KOG4532|consen 190 ESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLL 267 (344)
T ss_pred ccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEE
Confidence 654433323334455567889998888 79999999999999998643322 23458999999999987766788
Q ss_pred EEEecCCeEEEEEccCCCceeEecCCC--------CcEEEEEECCCCCEEEEEe
Q 001160 515 FSTAIDGKIKAWLYDYLGSRVDYDAPG--------NWCTMMAYSADGTRLFSCG 560 (1134)
Q Consensus 515 ~s~~~d~~i~~wd~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~ 560 (1134)
+..-.-+.+.+.|+++......+.... ..+....|+.++..+.+..
T Consensus 268 f~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 268 FISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred EEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence 888888999999999876544332221 2366666766666655543
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.74 E-value=1e-07 Score=98.38 Aligned_cols=165 Identities=16% Similarity=0.113 Sum_probs=114.2
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEE-
Q 001160 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA- 426 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~- 426 (1134)
.++.+.++|.++ ++|++..+....++++..... ..+.++.. .-...-+.+.|-.+......+
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~------------~v~~~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVS------------CVPKRPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEe------------ecccCcceeeeeeccceEEEEe
Confidence 556677788887 788888777877777765543 11122210 011122334444444444444
Q ss_pred --eCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe-cCCCCCeEEE
Q 001160 427 --FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAPVYSV 503 (1134)
Q Consensus 427 --~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~i 503 (1134)
+....+.+|....+... .+-||-..++.++|+||++ +|+++..|..|++-....-..+..| -||...|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 44556667766653322 3458999999999999998 8999999999999887665555544 4799999999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCceeEec
Q 001160 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 538 (1134)
+..++ ..|+++|.|+++++||+.+++.+..+.
T Consensus 201 sl~~~---~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLTDN---YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eeccC---ceeeecCCCCcEEEEecccCCcccccc
Confidence 98654 679999999999999999888775443
No 296
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.72 E-value=8.1e-06 Score=92.96 Aligned_cols=308 Identities=11% Similarity=0.065 Sum_probs=170.1
Q ss_pred cEEEEEecCCeEEEEEccCCCceeEecCCCC--cEE-----EEEEC--CCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE
Q 001160 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCT-----MMAYS--ADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1134)
Q Consensus 512 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~v~-----~~~~s--~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1134)
..+++++.++.+.-+|..+++.+........ ... .+.-. -++..++.++ .++.++.+|.++|+.+-+
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~----~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGS----EKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEc----CCCEEEEEECCCCCCccc
Confidence 5677777788888888888777765543321 000 00000 1344555554 367899999999998877
Q ss_pred ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCC---CcceEEEccCCCEEEEEeCCCcEEEE
Q 001160 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP---ASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1134)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~s~d~~~l~~~~~dg~i~iw 659 (1134)
...... ...+.... +..++.+..++.++.+|..+|+.+-......... ...+... .+..++.++.+|.+..+
T Consensus 146 ~~~~~~-~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~ 220 (394)
T PRK11138 146 TKVAGE-ALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAV 220 (394)
T ss_pred ccCCCc-eecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEE
Confidence 765432 11112222 4567778889999999999999887776431100 0011111 23457778889999999
Q ss_pred ECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccc
Q 001160 660 ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPR 739 (1134)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1134)
|..+|+. .......... +.
T Consensus 221 d~~~G~~-~W~~~~~~~~----------------------------------------------------------~~-- 239 (394)
T PRK11138 221 LMEQGQL-IWQQRISQPT----------------------------------------------------------GA-- 239 (394)
T ss_pred EccCChh-hheeccccCC----------------------------------------------------------Cc--
Confidence 9988832 2211100000 00
Q ss_pred cccccCcc-ceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCc
Q 001160 740 VAEDVDKI-KSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAP 818 (1134)
Q Consensus 740 ~~~~~~~i-~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~ 818 (1134)
..+ +++++. ..++ + .+..+++++.+|.+..+|..+++
T Consensus 240 -----~~~~~~~~~~------------------~sP~----v--~~~~vy~~~~~g~l~ald~~tG~------------- 277 (394)
T PRK11138 240 -----TEIDRLVDVD------------------TTPV----V--VGGVVYALAYNGNLVALDLRSGQ------------- 277 (394)
T ss_pred -----cchhcccccC------------------CCcE----E--ECCEEEEEEcCCeEEEEECCCCC-------------
Confidence 000 000000 0000 1 12335555666766666543221
Q ss_pred ccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCC-CceEEEEEcCCCCcE
Q 001160 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNI 896 (1134)
Q Consensus 819 ~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~ 896 (1134)
.+|....+ ....+.. ++..+..++ +|.+..+|..+++.+....... ....+..+. + ..
T Consensus 278 ~~W~~~~~---------------~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~-g~ 337 (394)
T PRK11138 278 IVWKREYG---------------SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--N-GY 337 (394)
T ss_pred EEEeecCC---------------CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--C-CE
Confidence 12322110 0111222 344455555 8999999999998776543211 122223332 3 46
Q ss_pred EEEEeCCCcEEEEEcCCceEEEEecCcccceEE-EEEecCCCEEEEEcCCCcEEEEeC
Q 001160 897 IAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG-LAFSPTLNALVSSGADAQLCMWSI 953 (1134)
Q Consensus 897 lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~-l~~s~d~~~l~s~~~D~~i~iWd~ 953 (1134)
|++++.||.|+..|..+|+.+...+-....+.+ ..+ .+..|+.++.||.|+.++.
T Consensus 338 l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 338 LVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 677899999999999999988877644333332 222 2446778889998887654
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.72 E-value=3.4e-07 Score=90.48 Aligned_cols=248 Identities=16% Similarity=0.248 Sum_probs=164.9
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC--ccceeeEEeccc------------CCeeEEEEecCCCcEEEEE
Q 001160 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG--ELRQHLEIDAHV------------GGVNDIAFAHPNKQLCIVT 472 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~--~~~~~~~~~~h~------------~~v~~l~~s~d~~~~~l~s 472 (1134)
..+.|+++.|...|.|||+|...|.|.++.-.... ..+-..++++|. ..|..+.|..++.+-.++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999999999999765432 222233455664 3578888887766556777
Q ss_pred EcCCCcEEEEECCCCe-------------------------------------ee-----EEe-cCCCCCeEEEEeeccC
Q 001160 473 CGDDKMIKVWDVVAGR-------------------------------------KQ-----YTF-EGHEAPVYSVCPHHKE 509 (1134)
Q Consensus 473 g~~d~~i~iwd~~~~~-------------------------------------~~-----~~~-~~h~~~v~~i~~~~~~ 509 (1134)
.+.|++|++|.+.... .+ +.. ..|...|.++.+..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 8889999999875431 00 001 2466667778776543
Q ss_pred CccEEEEEecCCeEEEEEccCCCcee---EecCCCC-----cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeE-
Q 001160 510 SIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGN-----WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK- 580 (1134)
Q Consensus 510 ~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~~~~~-----~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~- 580 (1134)
..+++ +.|=.|.+|+++....-. .+..+.- -|++..|+|....++.-+. ..|.|++-|++...+.
T Consensus 185 --et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs---SkG~Ikl~DlRq~alcd 258 (460)
T COG5170 185 --ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS---SKGEIKLNDLRQSALCD 258 (460)
T ss_pred --heeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec---CCCcEEehhhhhhhhcc
Confidence 45554 568889999987654432 3333322 5788899996554432221 3778999999843211
Q ss_pred ---EEe------------cCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCC-CeeEEEEeCCCC----------CCC
Q 001160 581 ---RTY------------SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGG----------LPA 634 (1134)
Q Consensus 581 ---~~~------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~----------~~~ 634 (1134)
..+ .+.. ..|..+.|+++|+++++-+. -+|.+||+.. ..++.++..|.. ...
T Consensus 259 n~~klfe~~~D~v~~~ff~eiv-sSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDa 336 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIV-SSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDA 336 (460)
T ss_pred CchhhhhhccCcccchhHHHHh-hhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccc
Confidence 111 1111 15777899999999887654 5799999986 446776654421 111
Q ss_pred c---ceEEEccCCCEEEEEeCCCcEEEEECC
Q 001160 635 S---PRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 635 v---~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
| ..+.||.|.+.+.+|+..+..-++-..
T Consensus 337 ifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 337 IFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeeeEEEEecCCcccccccccccceeeeccc
Confidence 2 357889999999999998888887643
No 298
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.71 E-value=2.8e-06 Score=82.63 Aligned_cols=232 Identities=10% Similarity=-0.001 Sum_probs=153.5
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCC
Q 001160 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1134)
Q Consensus 419 dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~ 498 (1134)
...+||.|+..|...+|...+.+.... ....|...|+-+.=.-|.+. -+..++.|.++++.++.-+..-..+ |..
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~--~cd~snn~v~~~~r~cd~~~-~~~i~sndht~k~~~~~~~s~~~~~--h~~ 157 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLY--QCDVSNNDVTLVKRYCDLKF-PLNIASNDHTGKTMVVSGDSNKFAV--HNQ 157 (344)
T ss_pred cccEEEeccccceeeeecccCccccee--eecccccchhhhhhhccccc-ceeeccCCcceeEEEEecCccccee--ecc
Confidence 345899999999999999987654321 22334444433322223332 4667888999999987655432222 333
Q ss_pred C--eEEEEeeccCCccEEEEEecCCeEEEEEccCCCcee---EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEe
Q 001160 499 P--VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1134)
Q Consensus 499 ~--v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1134)
. +.+++++++ +.++++.+....|..|.++...... ........-.+..|+.....+|++.. |+++.|||
T Consensus 158 ~~~~ns~~~snd--~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Q----dg~~~I~D 231 (344)
T KOG4532|consen 158 NLTQNSLHYSND--PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQ----DGTCAIYD 231 (344)
T ss_pred ccceeeeEEcCC--CceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEec----CCcEEEEE
Confidence 3 677777654 4899999999999999998765533 22333445568899999999999974 88999999
Q ss_pred CCCCeeEE----EecCccCcceEEEEEeCCCC--EEEEEeCCCeEEEEECCCCeeEEEEeCCCCC------CCcceEEEc
Q 001160 574 ESEGAIKR----TYSGFRKRSLGVVQFDTTRN--RFLAAGDEFQIKFWDMDNMNMLTTVDADGGL------PASPRLRFN 641 (1134)
Q Consensus 574 ~~~~~~~~----~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s 641 (1134)
++...... .-+.++.+.++.+.|++.|. .|+..-.-+.+.+-|++++...+.+...... ..|....|+
T Consensus 232 VR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~ 311 (344)
T KOG4532|consen 232 VRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFN 311 (344)
T ss_pred ecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccccccccc
Confidence 98754332 23345666899999998773 4555555678999999998877666433222 335666777
Q ss_pred cCCCEEEEEeCCCcEEEEECC
Q 001160 642 KEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 642 ~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
.++.-+.+.+.+ .+.=|++.
T Consensus 312 ~~n~s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 312 NENESNDVKNEL-QGAEYNIL 331 (344)
T ss_pred CCCcccccccch-hhheeecc
Confidence 766666555544 33445443
No 299
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.71 E-value=1.3e-05 Score=82.82 Aligned_cols=234 Identities=13% Similarity=0.157 Sum_probs=154.8
Q ss_pred CeeEEEEecCCCeEEEEEeCCC-cEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEE
Q 001160 348 NVMSMDFHPQQQTILLVGTNVG-DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~ 426 (1134)
....++.+|+....++.+-.-| ...+||..+++.+.... .....-+.|| -.||+||++|.+.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~LytT 68 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYTT 68 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEEe
Confidence 4567889997666888887776 57899999998765311 0111124445 5799999999986
Q ss_pred -----eCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEc----------------CCCcEEEEECC
Q 001160 427 -----FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG----------------DDKMIKVWDVV 485 (1134)
Q Consensus 427 -----~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~----------------~d~~i~iwd~~ 485 (1134)
...|.|-|||... .++...++..|.-.-..+.+.|||+.+.++-|+ .+-++...|..
T Consensus 69 End~~~g~G~IgVyd~~~--~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~ 146 (305)
T PF07433_consen 69 ENDYETGRGVIGVYDAAR--GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR 146 (305)
T ss_pred ccccCCCcEEEEEEECcC--CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC
Confidence 3468999999983 244555777777677789999999854444443 23356677888
Q ss_pred CCeeeEE--e--cCCCCCeEEEEeeccCCccEEEEEecCCe-------EEEEEccCCCceeEec-------CCCCcEEEE
Q 001160 486 AGRKQYT--F--EGHEAPVYSVCPHHKESIQFIFSTAIDGK-------IKAWLYDYLGSRVDYD-------APGNWCTMM 547 (1134)
Q Consensus 486 ~~~~~~~--~--~~h~~~v~~i~~~~~~~~~~l~s~~~d~~-------i~~wd~~~~~~~~~~~-------~~~~~v~~~ 547 (1134)
+|+.+.. + .-|.-.|..+++..++ ..++..-..|. +-+++. ++....+. .-.+.+-++
T Consensus 147 sG~ll~q~~Lp~~~~~lSiRHLa~~~~G--~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSI 222 (305)
T PF07433_consen 147 SGALLEQVELPPDLHQLSIRHLAVDGDG--TVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSI 222 (305)
T ss_pred CCceeeeeecCccccccceeeEEecCCC--cEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEE
Confidence 8887765 4 3377889999986653 44443322222 333322 22222222 224578899
Q ss_pred EECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeE
Q 001160 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQI 612 (1134)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 612 (1134)
++++++..+++.+. ..+.+.+||..+++.+...... .+..++-.+++ ++++.+ .|.+
T Consensus 223 a~~~~g~~ia~tsP---rGg~~~~~d~~tg~~~~~~~l~---D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 223 AADRDGRLIAVTSP---RGGRVAVWDAATGRLLGSVPLP---DACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred EEeCCCCEEEEECC---CCCEEEEEECCCCCEeeccccC---ceeeeeecCCc-eEEeCC-CccE
Confidence 99999999987764 4678999999999998876654 45566666665 555544 3443
No 300
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.3e-06 Score=91.06 Aligned_cols=215 Identities=10% Similarity=0.133 Sum_probs=147.0
Q ss_pred cccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC--C-eeeEEecCCCCCeEEEEeeccCCccEEEEEec-CCeEEEE
Q 001160 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--G-RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAW 526 (1134)
Q Consensus 451 ~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~--~-~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-d~~i~~w 526 (1134)
-|.+.|+.+.-+.. + ++.+++.||.++.|--.. | +.+..+..|-+.|.+++.+.+ |.++.|.+. |..++++
T Consensus 7 mhrd~i~hv~~tka-~--fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~d--g~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA-K--FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYD--GWLFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEeeehh-h--eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcccc--ceeEeeccCcccceeEE
Confidence 47777888776554 3 799999999999998433 1 234456678888998888654 478888777 9999999
Q ss_pred EccCCCceeEecCCCCcEEEEEECCCCC--EEEEEeeCCCCCCcEEEEeCCCCe-eEEEecCccCcceEEEEEeCCCCEE
Q 001160 527 LYDYLGSRVDYDAPGNWCTMMAYSADGT--RLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRF 603 (1134)
Q Consensus 527 d~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l 603 (1134)
|+++......+....-+-.+-.+...|. -+++.+. -.++.+.++|-.... +..-+.+.+-.+|.++.+++.+..+
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~--~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSL--FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA 159 (558)
T ss_pred EeeccchhhhcccccCCCceEEecCCCCeeeeEEeec--ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccce
Confidence 9987655432222111111112222332 1222222 247789999977544 4445555454599999999999999
Q ss_pred EEEeCCCeEEEEECCC------CeeEEEE-------eCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhh
Q 001160 604 LAAGDEFQIKFWDMDN------MNMLTTV-------DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRM 670 (1134)
Q Consensus 604 ~~~~~dg~i~iwd~~~------~~~~~~~-------~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~ 670 (1134)
++....|.|.-|.... .+....+ ..........++.|+|+|..+.+-+.|..|++++..++ ++++.
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvqe 238 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQE 238 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhhhh
Confidence 9999999999999873 1111111 11122345689999999999999999999999999999 67666
Q ss_pred hcC
Q 001160 671 LEG 673 (1134)
Q Consensus 671 ~~~ 673 (1134)
+..
T Consensus 239 iDE 241 (558)
T KOG0882|consen 239 IDE 241 (558)
T ss_pred hhc
Confidence 643
No 301
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.70 E-value=5.2e-07 Score=89.19 Aligned_cols=255 Identities=14% Similarity=0.181 Sum_probs=165.1
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcccccc---ccceeeccccccccccccccc--cCCcCeEEEEEcCCC
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH---KPFKVWDISAASMPLQNALLN--DAAISVNRCVWGPDG 420 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~i~~spdg 420 (1134)
.+-|++|.|...|. +|++|...|.|.++.-.....-.. ..|+..+.. ...++ .-...|..+.|..++
T Consensus 26 ad~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~E-------FDYLkSleieEKin~I~w~~~t 97 (460)
T COG5170 26 ADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELE-------FDYLKSLEIEEKINAIEWFDDT 97 (460)
T ss_pred cceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhcccccc-------hhhhhhccHHHHhhheeeecCC
Confidence 46899999999997 789998889999998654331100 011111100 00011 123568899998765
Q ss_pred C--EEEEEeCCCeEEEEEcCCCC-------------------cc------c--------------eeeEE-ecccCCeeE
Q 001160 421 L--MLGVAFSKHIVHLYTYNPTG-------------------EL------R--------------QHLEI-DAHVGGVND 458 (1134)
Q Consensus 421 ~--~las~~~dg~i~iwd~~~~~-------------------~~------~--------------~~~~~-~~h~~~v~~ 458 (1134)
. .++..+.|.+|++|.+.... .+ . +.+.. ..|..-|.+
T Consensus 98 ~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS 177 (460)
T COG5170 98 GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS 177 (460)
T ss_pred CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee
Confidence 4 56666799999999875420 00 0 00111 467778899
Q ss_pred EEEecCCCcEEEEEEcCCCcEEEEECCCCee---eEEecCCC-----CCeEEEEeeccCCccEEEEEecCCeEEEEEccC
Q 001160 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHE-----APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 530 (1134)
Q Consensus 459 l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~---~~~~~~h~-----~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~ 530 (1134)
+.|..|.+ .++++ +|=.|.+|++.-... +..++.|. .-|++..|+|... ..+.-.+..|.|++-|++.
T Consensus 178 iS~NsD~e--t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c-n~fmYSsSkG~Ikl~DlRq 253 (460)
T COG5170 178 ISFNSDKE--TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC-NVFMYSSSKGEIKLNDLRQ 253 (460)
T ss_pred eeecCchh--eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc-ceEEEecCCCcEEehhhhh
Confidence 99999888 56655 477899999874322 22334443 4578888988754 5667777899999999973
Q ss_pred CC-----c-ee--Ee--------cCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC-CeeEEEecCccC-----
Q 001160 531 LG-----S-RV--DY--------DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRK----- 588 (1134)
Q Consensus 531 ~~-----~-~~--~~--------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~----- 588 (1134)
.. . .. .+ ..-...|..+.|+++|+++++-. -.++.+||.+. ..++.++..|..
T Consensus 254 ~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-----yltvkiwDvnm~k~pikTi~~h~~l~~~l 328 (460)
T COG5170 254 SALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-----YLTVKIWDVNMAKNPIKTIPMHCDLMDEL 328 (460)
T ss_pred hhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-----cceEEEEecccccCCceeechHHHHHHHH
Confidence 21 1 11 11 11223678899999999999864 45699999985 456777655432
Q ss_pred ------cce---EEEEEeCCCCEEEEEeCCCeEEEEEC
Q 001160 589 ------RSL---GVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1134)
Q Consensus 589 ------~~v---~~~~~~~~~~~l~~~~~dg~i~iwd~ 617 (1134)
..| ..+.|+.|.+.+++|+.....-++-.
T Consensus 329 ~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 329 NDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred HhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 122 23778888888888887776666643
No 302
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.69 E-value=1.4e-07 Score=97.35 Aligned_cols=160 Identities=14% Similarity=0.249 Sum_probs=112.4
Q ss_pred EEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEE
Q 001160 776 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 855 (1134)
Q Consensus 776 ~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~l 855 (1134)
..+..++++++++.+.++....++++..... ..++|+. ... ...-+++.|..+...+
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~----------~~kl~~~---------~~v----~~~~~ai~~~~~~~sv 122 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPK----------GAKLLDV---------SCV----PKRPTAISFIREDTSV 122 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCC----------cceeeeE---------eec----ccCcceeeeeeccceE
Confidence 4456677888777777777766666543211 0111111 011 2333445555555555
Q ss_pred EEEe----CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEe-cCcccceEEE
Q 001160 856 MSAS----GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-KGHQNRITGL 930 (1134)
Q Consensus 856 a~~s----dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l-~~h~~~i~~l 930 (1134)
.++. ...+.+|....+.+ ..+.||-+.++.++|+| |+++|+++..|..|+|-.+..--.+..+ -||..-|..+
T Consensus 123 ~v~dkagD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 123 LVADKAGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred EEEeecCCceeeeeecccccCc-chhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 5543 35677777776444 45567999999999999 8899999999999999988776666665 4799999999
Q ss_pred EEecCCCEEEEEcCCCcEEEEeCCCcccccc
Q 001160 931 AFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961 (1134)
Q Consensus 931 ~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~ 961 (1134)
+.-++ ..|+|+|.|++|++||+.+|+.+..
T Consensus 201 sl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 201 SLTDN-YLLLSGSGDKTLRLWDITSGKLLDT 230 (390)
T ss_pred eeccC-ceeeecCCCCcEEEEecccCCcccc
Confidence 98755 5689999999999999999997643
No 303
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.69 E-value=3.5e-06 Score=88.90 Aligned_cols=225 Identities=15% Similarity=0.136 Sum_probs=137.2
Q ss_pred CCeEEEEECCCCeEEEEecCC--CCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCC
Q 001160 860 GGKVSLFNMMTFKVMTMFMSP--PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 937 (1134)
Q Consensus 860 dg~i~vwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~ 937 (1134)
+|+|..||..+++.+....-. .....+..+ + ++..+++++.++.|+.||..+|+.+..+.. .+.+..... .++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-eccc
Confidence 588999999999999887631 122222233 2 345666678999999999999999888764 222211122 2345
Q ss_pred EEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEE-CCeEEEEeC-CCcceeccCCCCC
Q 001160 938 ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-ESQISVYDS-KLECSRSWSPKDA 1015 (1134)
Q Consensus 938 ~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-d~~v~vwd~-~~~~~~~~~~~~~ 1015 (1134)
.++.++.|+.++.+|..+|+.+............ .........++..++++. ++.|..+|+ +++.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccc----cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 5666667889999999999865442121111110 111222333377777754 899999998 6776655544221
Q ss_pred C-CC------CeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEE
Q 001160 1016 L-PA------PISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALG 1088 (1134)
Q Consensus 1016 h-~~------~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~ 1088 (1134)
. .. .+.+-....++ .++.++.++.+.-+|+.+|+.+-+.... .... .... ++..|+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~~------------~~~~-~~~~-~~~~l~~~ 218 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKPIS------------GIYS-LPSV-DGGTLYVT 218 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEECSS-------------ECE-CEEC-CCTEEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEecCC------------CccC-Ccee-eCCEEEEE
Confidence 1 11 12222333345 6777777886444499999866433211 0111 1223 45778877
Q ss_pred eCCCcEEEEecCCCccccC
Q 001160 1089 MSDGAVHVVEPSDAELKWG 1107 (1134)
Q Consensus 1089 ~~Dg~v~vW~~~~~~~~~~ 1107 (1134)
+.++.|..||+.+++..|.
T Consensus 219 ~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 219 SSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ETTTEEEEEETTTTEEEEE
T ss_pred eCCCEEEEEECCCCCEEeE
Confidence 7999999999999998885
No 304
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.67 E-value=1.3e-05 Score=91.25 Aligned_cols=187 Identities=13% Similarity=0.075 Sum_probs=113.8
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCC--CCeE-----EEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCC
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHE--APVY-----SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG 541 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~--~~v~-----~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 541 (1134)
.++.++.++.+.-+|..+|+.+....-.. .... .+.-.+.-++..++.++.++.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 57777888999999999999876654221 0000 0000111123577788899999999999998888766543
Q ss_pred CcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcce-----EEEEEeCCCCEEEEEeCCCeEEEEE
Q 001160 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-----GVVQFDTTRNRFLAAGDEFQIKFWD 616 (1134)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd 616 (1134)
....+.... + ..++.+. .++.++.+|..+|+.+-.+..... .+ .+... .+..++.++.+|.+..+|
T Consensus 151 ~~~ssP~v~-~-~~v~v~~----~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 151 EALSRPVVS-D-GLVLVHT----SNGMLQALNESDGAVKWTVNLDVP-SLTLRGESAPAT--AFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred ceecCCEEE-C-CEEEEEC----CCCEEEEEEccCCCEeeeecCCCC-cccccCCCCCEE--ECCEEEEEcCCCEEEEEE
Confidence 322222221 3 3444443 367899999999998877764321 10 11111 134577778899999999
Q ss_pred CCCCeeEEEEeCCCCC--CC---cceEEEcc--CCCEEEEEeCCCcEEEEECCCc
Q 001160 617 MDNMNMLTTVDADGGL--PA---SPRLRFNK--EGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 617 ~~~~~~~~~~~~~~~~--~~---v~~~~~s~--d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
..+|+.+......... .. ...+.-+| .+..++.++.+|.+..+|..+|
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 9999876554321100 00 01111122 3456777778899999998877
No 305
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.66 E-value=1.4e-06 Score=84.31 Aligned_cols=95 Identities=21% Similarity=0.346 Sum_probs=72.3
Q ss_pred CeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEE-EEecCcccceEEEEEec-CCCE
Q 001160 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK-TKLKGHQNRITGLAFSP-TLNA 938 (1134)
Q Consensus 861 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~-~~l~~h~~~i~~l~~s~-d~~~ 938 (1134)
+..+.|+++..+....-......|++++-+|...+++++|+.||.+.+||.+..... ..+..|..+|+.+-|+| ++..
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 345556555433222211123349999999977788999999999999999887443 34789999999999999 5789
Q ss_pred EEEEcCCCcEEEEeCCC
Q 001160 939 LVSSGADAQLCMWSIDK 955 (1134)
Q Consensus 939 l~s~~~D~~i~iWd~~~ 955 (1134)
|++++.||.+..||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 99999999999999886
No 306
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.65 E-value=0.0025 Score=74.28 Aligned_cols=283 Identities=11% Similarity=0.115 Sum_probs=139.3
Q ss_pred ceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccc--cCCCCCCCCceEEEEeccC
Q 001160 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTND--INESKPTEESAACIALSKN 851 (1134)
Q Consensus 774 ~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~--~~~~~h~~~~i~~~~~s~d 851 (1134)
.|.-..+-.|..+|+++.+||.+.-+.+.. .+|..-... .-| ..++.--.|+..
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~--------------------~tg~lsd~Kk~~lG----t~P~~Lr~f~sk 640 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDI--------------------NTGQLSDRKKVTLG----TQPISLRTFSSK 640 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEc--------------------ccceEccccccccC----CCCcEEEEEeeC
Confidence 344455556688899999999988776532 222211111 111 334444455443
Q ss_pred C-CEEEEEeCCeEEEEECCCCeEEEEecCCCCceE-EEEEcCC-CCcEEEEEeCCCcEEEEEcCCce--EEEEecCcccc
Q 001160 852 D-SYVMSASGGKVSLFNMMTFKVMTMFMSPPPAAT-FLAFHPQ-DNNIIAIGMEDSSVQIYNVRVDE--VKTKLKGHQNR 926 (1134)
Q Consensus 852 g-~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~-~l~~s~~-~~~~lasg~~dg~i~iwd~~~~~--~~~~l~~h~~~ 926 (1134)
+ ..+.+.+|.-..+|.-. ++...+-- .-..+. .+.|+.+ .+..|+++ ..+.+++.-++.-+ .++++.-| ..
T Consensus 641 ~~t~vfa~sdrP~viY~~n-~kLv~spl-s~kev~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtvpl~-~~ 716 (1096)
T KOG1897|consen 641 SRTAVFALSDRPTVIYSSN-GKLVYSPL-SLKEVNHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTVPLG-ES 716 (1096)
T ss_pred CceEEEEeCCCCEEEEecC-CcEEEecc-chHHhhhhcccccccCCceEEEe-cCCceEEEEecchhhcceeeecCC-CC
Confidence 3 34444445544444432 23222211 001111 1223221 22344444 33456665554321 12223322 23
Q ss_pred eEEEEEecCCCEEEEEcC-----------C---CcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCC-CcEEEE
Q 001160 927 ITGLAFSPTLNALVSSGA-----------D---AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND-QTHLLV 991 (1134)
Q Consensus 927 i~~l~~s~d~~~l~s~~~-----------D---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd-g~~l~~ 991 (1134)
...+++.+....+++.+. . ..++++|-.+.+.+........+. ...+..+.|..| +.++++
T Consensus 717 prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~----~~Si~s~~~~~d~~t~~vV 792 (1096)
T KOG1897|consen 717 PRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNET----ALSIISCKFTDDPNTYYVV 792 (1096)
T ss_pred hhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccce----eeeeeeeeecCCCceEEEE
Confidence 445565553333333221 1 236777777755433221111111 134566679988 778877
Q ss_pred EE-----------CCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcc
Q 001160 992 VH-----------ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA 1059 (1134)
Q Consensus 992 ~~-----------d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~ 1059 (1134)
|. .|.|.||.. +.+.+...... ...+.+.++.. -+|++||. -...|++|+..+++.++.-..+
T Consensus 793 GT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~-~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~~~- 867 (1096)
T KOG1897|consen 793 GTGLVYPDENEPVNGRIIVFEFEELNSLELVAET-VVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIECNI- 867 (1096)
T ss_pred EEEeeccCCCCcccceEEEEEEecCCceeeeeee-eeccceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhhcc-
Confidence 52 367888888 43444433221 11344444442 46777765 4668999999988555332211
Q ss_pred cccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1060 YIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1060 ~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
...+. ++... ..|+.++.|..-+++.+-.....|
T Consensus 868 -------~~~~~--aL~l~-v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 868 -------SNPII--ALDLQ-VKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred -------cCCeE--EEEEE-ecCcEEEEeeccceEEEEEEeccC
Confidence 11123 33322 267899999988888776665555
No 307
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=2.8e-06 Score=95.14 Aligned_cols=112 Identities=13% Similarity=0.369 Sum_probs=85.0
Q ss_pred CCeeEEEEecCCCeEEEEEe----CCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCE
Q 001160 347 SNVMSMDFHPQQQTILLVGT----NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
..-+-..|+|... ++|+++ ..|.|.||- ++|+.-...+. .-.+++++|+|..-.
T Consensus 16 avsti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--------------------P~hatSLCWHpe~~v 73 (1416)
T KOG3617|consen 16 AVSTISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVTY--------------------PVHATSLCWHPEEFV 73 (1416)
T ss_pred ccccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCccccc--------------------ceehhhhccChHHHH
Confidence 3445568999987 677664 357888884 45554332111 112667999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~ 485 (1134)
||.|-.-|.+.+|...+.+.-. ....|..+|..+.||++|. .++|+..-|.|.+|...
T Consensus 74 La~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 74 LAQGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred HhhccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEee
Confidence 9999999999999988754322 3346999999999999999 89999999999999865
No 308
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.63 E-value=6.8e-07 Score=86.51 Aligned_cols=209 Identities=13% Similarity=0.194 Sum_probs=127.0
Q ss_pred eeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeC
Q 001160 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS 428 (1134)
Q Consensus 349 V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~ 428 (1134)
|+.+.|+-+- .|+++..++.+......++.+... |+-.. ...+...+..|.++-.+-+.+--++.+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~-----~~rt~--~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISL-----WERDD--GIDPFKVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEech-----hhccc--CcCceeeeeccCCCCCcccccccCCceEecCC
Confidence 6677777664 577888888877777665544321 11100 01111123345555555555667889999999
Q ss_pred CCeEEEEEcCCCCccceeeEEec-ccCCeeEEEEecCCCcEEEEEEc-----CCCcEEEEECCCCeeeEEecCCCCCeEE
Q 001160 429 KHIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCG-----DDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1134)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~sg~-----~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1134)
||.+.+.+.+.- ++....... |.+ --+......+. .+.++. .-+..++|+++..+.+..-......|.+
T Consensus 110 dg~~~v~s~~~~--~~~~~~i~~~~~~-~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKD--LALMSRIPSIHSG-SASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHH--Hhhhhhccccccc-ccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 999999998762 211111111 211 12223333444 333332 1224556665543322211112234899
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEccCCCcee-EecCCCCcEEEEEECC-CCCEEEEEeeCCCCCCcEEEEeCCC
Q 001160 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESE 576 (1134)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1134)
++-+|... +.+++|+.||.+-+||.++...+. .+..|..++..+-|+| ++..|++++. +|.+..||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 99888764 788999999999999999875444 5677888999999999 4577888874 78899999664
No 309
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.60 E-value=5.8e-05 Score=73.52 Aligned_cols=143 Identities=8% Similarity=0.034 Sum_probs=93.9
Q ss_pred EEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeE
Q 001160 353 DFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432 (1134)
Q Consensus 353 ~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i 432 (1134)
..-+|.+++++.|+..+.+.--|..+|..... . --...|-+-+.- -|++++.|...|.+
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We-------~-------------ilg~RiE~sa~v-vgdfVV~GCy~g~l 75 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWE-------A-------------ILGVRIECSAIV-VGDFVVLGCYSGGL 75 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEee-------h-------------hhCceeeeeeEE-ECCEEEEEEccCcE
Confidence 34456677899999999999999999876543 1 112233333322 57789999999999
Q ss_pred EEEEcCCCCccceeeEEecccCCee-EEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCc
Q 001160 433 HLYTYNPTGELRQHLEIDAHVGGVN-DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI 511 (1134)
Q Consensus 433 ~iwd~~~~~~~~~~~~~~~h~~~v~-~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 511 (1134)
++.+.++|+.......+. .|. .....+++. ++..|+.|++.+..|..+..+++..+-..+...+-++.+. +
T Consensus 76 Yfl~~~tGs~~w~f~~~~----~vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~- 147 (354)
T KOG4649|consen 76 YFLCVKTGSQIWNFVILE----TVKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-D- 147 (354)
T ss_pred EEEEecchhheeeeeehh----hhccceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-C-
Confidence 999999997766433322 222 234456777 8999999999999999999998886633322222233332 2
Q ss_pred cEEEEEecCCeEE
Q 001160 512 QFIFSTAIDGKIK 524 (1134)
Q Consensus 512 ~~l~s~~~d~~i~ 524 (1134)
..|..+...|.+.
T Consensus 148 ~sly~a~t~G~vl 160 (354)
T KOG4649|consen 148 GSLYAAITAGAVL 160 (354)
T ss_pred ceEEEEeccceEE
Confidence 3344444445443
No 310
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.60 E-value=6.2e-05 Score=79.54 Aligned_cols=218 Identities=19% Similarity=0.204 Sum_probs=141.5
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEe-cCCCcEEEEEEcCCCcEEEEECCCCeee
Q 001160 413 RCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1134)
Q Consensus 413 ~i~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s-~d~~~~~l~sg~~d~~i~iwd~~~~~~~ 490 (1134)
+++|.+ ++.++++--..+.|..|+..++... .+.. . ....+++. +++. ++.+..+ .+.++|+.+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~----~~~~-~-~~~G~~~~~~~g~---l~v~~~~-~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE----VIDL-P-GPNGMAFDRPDGR---LYVADSG-GIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE----EEES-S-SEEEEEEECTTSE---EEEEETT-CEEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE----EEec-C-CCceEEEEccCCE---EEEEEcC-ceEEEecCCCcEE
Confidence 577888 7777777777999999999886432 1221 2 26777887 6654 4445444 4556699988654
Q ss_pred EEecC-----CCCCeEEEEeeccCCccEEEEEecC--------CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEE
Q 001160 491 YTFEG-----HEAPVYSVCPHHKESIQFIFSTAID--------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1134)
Q Consensus 491 ~~~~~-----h~~~v~~i~~~~~~~~~~l~s~~~d--------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1134)
..... .....+.+++.++ |.+.++.... |.|..++.. .........-...+.++|+|+++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~--G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPD--GNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TT--S-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEEcCC--CCEEEEecCCCccccccccceEEECCC--CeEEEEecCcccccceEECCcchhee
Confidence 43322 3456778888665 4666665543 456666665 33333333345678999999999887
Q ss_pred EEeeCCCCCCcEEEEeCCCC-e-e--EEEe---cCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC
Q 001160 558 SCGTSKEGESHLVEWNESEG-A-I--KRTY---SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630 (1134)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~-~-~--~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 630 (1134)
.+.. ..+.|..+++... . . .+.+ .... +....+++..+|+..++....+.|.+++.+ |+.+..+....
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~ 224 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGP-GYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV 224 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSS-CEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCC-cCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC
Confidence 6543 4667888888532 2 1 1222 2221 146789999999988887789999999988 88888888763
Q ss_pred CCCCcceEEEc-cCCCEEEEEe
Q 001160 631 GLPASPRLRFN-KEGSLLAVTT 651 (1134)
Q Consensus 631 ~~~~v~~~~~s-~d~~~l~~~~ 651 (1134)
..+++++|. ++.+.|++.+
T Consensus 225 --~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 225 --PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --SSEEEEEEESTTSSEEEEEE
T ss_pred --CCEEEEEEECCCCCEEEEEe
Confidence 368999994 6766666544
No 311
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1e-05 Score=83.67 Aligned_cols=249 Identities=13% Similarity=0.147 Sum_probs=150.4
Q ss_pred ccccCCcCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEE
Q 001160 403 LLNDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~i 481 (1134)
++.+|...|..++|||... ++..++.+..|+|.|+.+...+. .+..| ..+++++|.-|..+ +|+.|...|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5778999999999999877 78889999999999999976555 45556 78999999999877 8999999999999
Q ss_pred EECCCCee-eEEecC--CCCCeEEEEeeccC----CccEEEEEecCCeEEEEEccCCC--ceeEecC-CCCcEEEEEECC
Q 001160 482 WDVVAGRK-QYTFEG--HEAPVYSVCPHHKE----SIQFIFSTAIDGKIKAWLYDYLG--SRVDYDA-PGNWCTMMAYSA 551 (1134)
Q Consensus 482 wd~~~~~~-~~~~~~--h~~~v~~i~~~~~~----~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~-~~~~v~~~~~s~ 551 (1134)
+|++..+- +..+.+ ...+|..++..+.. .|.+++..+.+ +..|.+.... ....... ..+...++...+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986442 223322 22344444322211 12344444433 3445543322 2222222 244556677777
Q ss_pred CCCEEEEEeeCCCCCCcEEE----EeCCCCeeEEEec-Cc---cCcc---eEEEEEeCCCCEEEE-EeCCCeEEEEECCC
Q 001160 552 DGTRLFSCGTSKEGESHLVE----WNESEGAIKRTYS-GF---RKRS---LGVVQFDTTRNRFLA-AGDEFQIKFWDMDN 619 (1134)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~----wd~~~~~~~~~~~-~~---~~~~---v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~ 619 (1134)
..+.++.......+..+++. .|-.+|.++..-+ ++ .... -..+.-.++.++++. +++.+.+.+||+.+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 66666655443211111111 1222333332211 11 1000 112223455566665 55778999999999
Q ss_pred CeeEEEEeCCCCCCCcceEEEcc-C-CCEEEEEeCCCcEEEEECC
Q 001160 620 MNMLTTVDADGGLPASPRLRFNK-E-GSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~s~-d-~~~l~~~~~dg~i~iw~~~ 662 (1134)
.+.++++... .+|..++... + +.+|++-+ |..++||..+
T Consensus 421 ~evvQ~l~~~---epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALS---EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccC---cceeecceeecCCcchhhhee-cceEEEEecC
Confidence 9999998765 3566666544 3 44666555 4478888754
No 312
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.58 E-value=0.0001 Score=77.95 Aligned_cols=219 Identities=16% Similarity=0.126 Sum_probs=143.1
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEc-CCCCEEEEEeCC
Q 001160 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG-PDGLMLGVAFSK 429 (1134)
Q Consensus 351 ~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s-pdg~~las~~~d 429 (1134)
++.|.+....|+++....+.|..|+..+++.... .......+++. +++. |+.+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~----------------------~~~~~~G~~~~~~~g~-l~v~~~~ 60 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI----------------------DLPGPNGMAFDRPDGR-LYVADSG 60 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE----------------------ESSSEEEEEEECTTSE-EEEEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE----------------------ecCCCceEEEEccCCE-EEEEEcC
Confidence 6789984445888887889999999988764321 11116677777 6654 4555555
Q ss_pred CeEEEEEcCCCCccceeeEEe--c-ccCCeeEEEEecCCCcEEEEEEcCC--------CcEEEEECCCCeeeEEecCCCC
Q 001160 430 HIVHLYTYNPTGELRQHLEID--A-HVGGVNDIAFAHPNKQLCIVTCGDD--------KMIKVWDVVAGRKQYTFEGHEA 498 (1134)
Q Consensus 430 g~i~iwd~~~~~~~~~~~~~~--~-h~~~v~~l~~s~d~~~~~l~sg~~d--------~~i~iwd~~~~~~~~~~~~h~~ 498 (1134)
+ +.++|..+++... ..... . .....+.+++.++|. +.++.... +.|..++.. ++..... ..-.
T Consensus 61 ~-~~~~d~~~g~~~~-~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~ 134 (246)
T PF08450_consen 61 G-IAVVDPDTGKVTV-LADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLG 134 (246)
T ss_dssp C-EEEEETTTTEEEE-EEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEES
T ss_pred c-eEEEecCCCcEEE-EeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEe-cCcc
Confidence 5 5556988875432 22322 1 345688999999998 56655433 557778866 5544333 3355
Q ss_pred CeEEEEeeccCCccEE-EEEecCCeEEEEEccCCCc----ee---EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEE
Q 001160 499 PVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGS----RV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1134)
Q Consensus 499 ~v~~i~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~----~~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1134)
..+.++|++++ +.| ++-+..+.|..++++.... .. .+....+..-.+++..+|+..++.. ..+.|.
T Consensus 135 ~pNGi~~s~dg--~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~----~~~~I~ 208 (246)
T PF08450_consen 135 FPNGIAFSPDG--KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW----GGGRIV 208 (246)
T ss_dssp SEEEEEEETTS--SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE----TTTEEE
T ss_pred cccceEECCcc--hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc----CCCEEE
Confidence 67899998865 554 5677889999999875443 11 1222223578999999998877754 367799
Q ss_pred EEeCCCCeeEEEecCccCcceEEEEEe-CCCCEEEEE
Q 001160 571 EWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAA 606 (1134)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~ 606 (1134)
+++.. |+.+..+..... .+++++|. ++.+.|+..
T Consensus 209 ~~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 209 VFDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEE
T ss_pred EECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEE
Confidence 99987 888888887644 78889994 666666554
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=4.3e-06 Score=87.36 Aligned_cols=300 Identities=14% Similarity=0.167 Sum_probs=190.3
Q ss_pred cccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc
Q 001160 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1134)
|...|+.+..+ -.+++++++-||.++.|.-.. .+|......+.. | ...|.+++.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~--------------------isGvEfVKhFra--H-L~~I~sl~~S~ 63 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSR--------------------ISGVEFVKHFRA--H-LGVILSLAVSY 63 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCC--------------------ccceeehhhhHH--H-HHHHHhhhccc
Confidence 55555555444 456689999999999995311 122222222333 6 78889999999
Q ss_pred CCCEEEEEe--CCeEEEEECCCCeEEEEecCCCC-ceEEEEEcCCCC-cEEEE-EeCCCcEEEEEcCCce--EEEEecCc
Q 001160 851 NDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPP-AATFLAFHPQDN-NIIAI-GMEDSSVQIYNVRVDE--VKTKLKGH 923 (1134)
Q Consensus 851 dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~-~~las-g~~dg~i~iwd~~~~~--~~~~l~~h 923 (1134)
||.++.+++ |..++++|+.+...+..++-..- .-.++..++.+. ..||+ .-.+|.+.|+|-.... ....-.-|
T Consensus 64 dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH 143 (558)
T KOG0882|consen 64 DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH 143 (558)
T ss_pred cceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccc
Confidence 999999976 78899999987655433332111 112223333111 13333 3467899999966443 33334569
Q ss_pred ccceEEEEEecCCCEEEEEcCCCcEEEEeCCC-cccccceeee------cCCCCCCCCcCceEEEECCCCcEEEE-EECC
Q 001160 924 QNRITGLAFSPTLNALVSSGADAQLCMWSIDK-WEKLKSRFIQ------APAGRQSPLVGETKVQFHNDQTHLLV-VHES 995 (1134)
Q Consensus 924 ~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~-~~~~~~~~~~------~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~ 995 (1134)
..+|..+.+++-+..++|....|.|.-|..+. .+.......- .+.+.........++.|+|+|..+.+ +.|.
T Consensus 144 ~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Dr 223 (558)
T KOG0882|consen 144 FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDR 223 (558)
T ss_pred cCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCccc
Confidence 99999999999999999999999999999873 2211111111 11122233356789999999999999 7899
Q ss_pred eEEEEeC-CCcceeccCCC-----------------------------CCC-CCCeEEEEEccCCCEEEEEecCCcEEEE
Q 001160 996 QISVYDS-KLECSRSWSPK-----------------------------DAL-PAPISSAIYSCDGLLVYAGFCDGAIGVF 1044 (1134)
Q Consensus 996 ~v~vwd~-~~~~~~~~~~~-----------------------------~~h-~~~v~~v~~s~dg~~l~~~~~dg~I~vw 1044 (1134)
.|++++. .++.++.+... ..| ...-+.+.|...|++|+.|+.=| |+|.
T Consensus 224 kVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvi 302 (558)
T KOG0882|consen 224 KVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVI 302 (558)
T ss_pred EEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEE
Confidence 9999998 44444332211 001 23456788999999999987665 9999
Q ss_pred eCCCcceeeecCCcccc----------------cccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEE
Q 001160 1045 DAETLRFRCRIGPSAYI----------------PTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVV 1097 (1134)
Q Consensus 1045 d~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW 1097 (1134)
++.+++..+.+...... +......+..++ +-+.+ |+.+++++=.-+.++++
T Consensus 303 n~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~-~~~~~-dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 303 NLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPL-LEFQK-DPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcc-cccCC-CCeEEEeeeecceEEEE
Confidence 99999887765532211 000001111222 22444 77778888788888887
No 314
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.53 E-value=4.1e-05 Score=80.73 Aligned_cols=221 Identities=12% Similarity=0.051 Sum_probs=137.1
Q ss_pred CCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceee
Q 001160 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447 (1134)
Q Consensus 368 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~ 447 (1134)
+|+|..||..+|+.+.+..+ ..-.....+. ..+++.++++++.++.+..||..+|+.+...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~-----------------~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~- 62 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDL-----------------GPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRF- 62 (238)
T ss_dssp TSEEEEEETTTTEEEEEEEC-----------------SSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEE-
T ss_pred CCEEEEEECCCCCEEEEEEC-----------------CCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEe-
Confidence 68899999999987654211 0001111111 3346777888889999999999998765432
Q ss_pred EEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe-cCCCC---CeEEEEeeccCCccEEEEEecCCeE
Q 001160 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEA---PVYSVCPHHKESIQFIFSTAIDGKI 523 (1134)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~~h~~---~v~~i~~~~~~~~~~l~s~~~d~~i 523 (1134)
.. ...+....... +. .++.++.++.|+.+|..+|+.+... ..... .......... +..++.+..++.|
T Consensus 63 --~~-~~~~~~~~~~~-~~--~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l 134 (238)
T PF13360_consen 63 --DL-PGPISGAPVVD-GG--RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKL 134 (238)
T ss_dssp --EC-SSCGGSGEEEE-TT--EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEE
T ss_pred --ec-cccccceeeec-cc--ccccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEeccCcE
Confidence 21 22222222333 33 4566667889999999999998874 32211 1111222222 3788888889999
Q ss_pred EEEEccCCCceeEecCCCCc----------EEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEE
Q 001160 524 KAWLYDYLGSRVDYDAPGNW----------CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGV 593 (1134)
Q Consensus 524 ~~wd~~~~~~~~~~~~~~~~----------v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~ 593 (1134)
..+|+++++.+......... +..-....++ .++.+.. ++.+..+|..+++.+.... .. .+..
T Consensus 135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~----~g~~~~~d~~tg~~~w~~~--~~-~~~~ 206 (238)
T PF13360_consen 135 VALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSG----DGRVVAVDLATGEKLWSKP--IS-GIYS 206 (238)
T ss_dssp EEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECC----TSSEEEEETTTTEEEEEEC--SS--ECE
T ss_pred EEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcC----CCeEEEEECCCCCEEEEec--CC-CccC
Confidence 99999999988776654322 1222233344 5555542 4434444999999664333 22 2222
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCeeEE
Q 001160 594 VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (1134)
Q Consensus 594 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1134)
....++..+++++.++.|.+||+.+++.+-
T Consensus 207 -~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 207 -LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp -CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred -CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 145677888888899999999999998764
No 315
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.52 E-value=4.8e-05 Score=84.89 Aligned_cols=266 Identities=15% Similarity=0.212 Sum_probs=150.6
Q ss_pred ecCCCeEEEEE--------eCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEE
Q 001160 355 HPQQQTILLVG--------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1134)
Q Consensus 355 spdg~~llasg--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~ 426 (1134)
|||++++|+.- +..+.+.|||+.+++... +......+....|||||+.+|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 68888666522 224678999999876543 12225678999999999999998
Q ss_pred eCCCeEEEEEcCCCCccceeeEEec-------c---------cCCeeEEEEecCCCcEEEEEEc-CCCc-----------
Q 001160 427 FSKHIVHLYTYNPTGELRQHLEIDA-------H---------VGGVNDIAFAHPNKQLCIVTCG-DDKM----------- 478 (1134)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~-------h---------~~~v~~l~~s~d~~~~~l~sg~-~d~~----------- 478 (1134)
. ++.|.+++..++...+. +..| - -+.-..+.|||||++ |+... ++..
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~~~~~~~ 135 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYPLPDYSP 135 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEEEEEESS
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEEeeccCC
Confidence 4 56799999877644322 1112 0 122367889999995 44322 1222
Q ss_pred ------------------------EEEEECCCCeeeE-Ee----cCCCCCeEEEEeeccCCccEEEEE--ecCC---eEE
Q 001160 479 ------------------------IKVWDVVAGRKQY-TF----EGHEAPVYSVCPHHKESIQFIFST--AIDG---KIK 524 (1134)
Q Consensus 479 ------------------------i~iwd~~~~~~~~-~~----~~h~~~v~~i~~~~~~~~~~l~s~--~~d~---~i~ 524 (1134)
+.|+|+.+++... .. ..-...+..+.|.+++ ..|+.. ..+. .+.
T Consensus 136 ~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~--~~l~~~~~nR~q~~~~l~ 213 (353)
T PF00930_consen 136 PDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDG--KRLWVQWLNRDQNRLDLV 213 (353)
T ss_dssp STESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETT--EEEEEEEEETTSTEEEEE
T ss_pred ccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCC--cEEEEEEcccCCCEEEEE
Confidence 2345554444321 11 1223446666776654 423332 2222 356
Q ss_pred EEEccCCCceeEecC-CCCcE---EEEEEC-CCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcce-EEEEEeC
Q 001160 525 AWLYDYLGSRVDYDA-PGNWC---TMMAYS-ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-GVVQFDT 598 (1134)
Q Consensus 525 ~wd~~~~~~~~~~~~-~~~~v---~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-~~~~~~~ 598 (1134)
++|..++........ ...+| ....|. +++..++..+. +++-..|++++...+... .+....- .| ..+.+++
T Consensus 214 ~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~-~lT~G~~-~V~~i~~~d~ 290 (353)
T PF00930_consen 214 LCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPR-QLTSGDW-EVTSILGWDE 290 (353)
T ss_dssp EEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEE-ESS-SSS--EEEEEEEEC
T ss_pred EEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEccccccee-ccccCce-eecccceEcC
Confidence 667766655443322 22222 245554 88888877765 667778888898877744 3433322 45 4577889
Q ss_pred CCCEEEE-EeC----CCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC
Q 001160 599 TRNRFLA-AGD----EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1134)
Q Consensus 599 ~~~~l~~-~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 652 (1134)
+++.++. +.. ...++.-++..+..+..+...... ...+.|||+|++++....
T Consensus 291 ~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 291 DNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp TSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEEE
T ss_pred CCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEEc
Confidence 8877664 443 335666667623444555544332 158999999998876543
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.52 E-value=2.3e-05 Score=92.58 Aligned_cols=270 Identities=8% Similarity=0.085 Sum_probs=159.9
Q ss_pred ccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccC
Q 001160 772 ASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 851 (1134)
Q Consensus 772 ~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d 851 (1134)
...|.++.|-.++..++.+...|.|.+-|..+.....-| . - ...|.+++||||
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg-----------------------~---v-d~GI~aaswS~D 120 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG-----------------------N---V-DNGISAASWSPD 120 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeee-----------------------e---c-cCceEEEeecCC
Confidence 478999999999999999999999988754332111100 0 1 678999999999
Q ss_pred CCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce-----EE------EEe
Q 001160 852 DSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-----VK------TKL 920 (1134)
Q Consensus 852 g~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~-----~~------~~l 920 (1134)
++.++....+...++...+..++....-+. .-.+ .+++ +.+++...=.-+.-..|+ .+ ...
T Consensus 121 ee~l~liT~~~tll~mT~~f~~i~E~~L~~------d~~~-~sk~-v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~ 192 (1265)
T KOG1920|consen 121 EELLALITGRQTLLFMTKDFEPIAEKPLDA------DDER-KSKF-VNVGWGRKETQFRGSEGRQAARQKIEKEKALEQI 192 (1265)
T ss_pred CcEEEEEeCCcEEEEEeccccchhcccccc------cccc-cccc-ceecccccceeeecchhhhcccccccccccccch
Confidence 999999985444444444444443322111 0011 1122 222222211111111111 00 101
Q ss_pred cCcccceEEEEEecCCCEEEEE-----cCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE---
Q 001160 921 KGHQNRITGLAFSPTLNALVSS-----GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--- 992 (1134)
Q Consensus 921 ~~h~~~i~~l~~s~d~~~l~s~-----~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--- 992 (1134)
.-| +.=++|.|--||.++|+. .....|+|||-+ |..... ..+.. ..-.+++|-|.|.++++-
T Consensus 193 ~~~-~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~---se~~~-----~l~~~LsWkPsgs~iA~iq~~ 262 (1265)
T KOG1920|consen 193 EQD-DHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNST---SEPVE-----GLQHSLSWKPSGSLIAAIQCK 262 (1265)
T ss_pred hhc-cCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcc---cCccc-----ccccceeecCCCCeEeeeeec
Confidence 112 223579999999998873 233789999988 332111 11110 223689999999999982
Q ss_pred -ECCeEEEEeCCCcceeccCCCCCC-CCCeEEEEEccCCCEEEE---EecCCcEEEEeCCCccee--eecCCcccccccc
Q 001160 993 -HESQISVYDSKLECSRSWSPKDAL-PAPISSAIYSCDGLLVYA---GFCDGAIGVFDAETLRFR--CRIGPSAYIPTYA 1065 (1134)
Q Consensus 993 -~d~~v~vwd~~~~~~~~~~~~~~h-~~~v~~v~~s~dg~~l~~---~~~dg~I~vwd~~~~~~~--~~~~~~~~~~~~~ 1065 (1134)
+++.|.+|..+|-....+...... ..+|..++|+.++..||+ ......|++|-..+..-- +.+. .+..
T Consensus 263 ~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~----~~~~- 337 (1265)
T KOG1920|consen 263 TSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQ----FSQK- 337 (1265)
T ss_pred CCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEe----cccc-
Confidence 567899999877665544433222 344999999999999988 444455999998875332 1111 1111
Q ss_pred cCCCCccEEEeecCCCCCEEEEEeCCCcEEEEe
Q 001160 1066 VSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1098 (1134)
Q Consensus 1066 ~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~ 1098 (1134)
. -+.|+|.....|..-..+|...+.+
T Consensus 338 ----~---~~~W~p~~~~~L~v~~~sG~~~v~~ 363 (1265)
T KOG1920|consen 338 ----A---LLMWDPVTEKTLHVLRESGQRLVRD 363 (1265)
T ss_pred ----c---cccccCCCceeEEEEecCCcEEEEE
Confidence 1 1777776666666665666555544
No 317
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.51 E-value=3.5e-07 Score=92.08 Aligned_cols=165 Identities=13% Similarity=0.090 Sum_probs=124.3
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCe
Q 001160 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431 (1134)
Q Consensus 352 v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~ 431 (1134)
++||-+-.-+-++.+.+-.|-+-|+++|.... + ..++.|.++.|...+.++..|..+|.
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRnge 275 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRNGE 275 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccCCc
Confidence 37775433233444557789999999886432 1 26678999999999999999999999
Q ss_pred EEEEEcCCCCc--cceeeEEecccCCeeEEEEec-CCCcEEEEEEcCCCcEEEEECCCCee---eEEecCCCCCeEEEEe
Q 001160 432 VHLYTYNPTGE--LRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVYSVCP 505 (1134)
Q Consensus 432 i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~-d~~~~~l~sg~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~i~~ 505 (1134)
|..+|+..+.. ......+ .|...|+++.... +++ +|++.+.+|.|++||++.-++ +..+.||...-.-+-+
T Consensus 276 I~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~ 352 (425)
T KOG2695|consen 276 IFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPA 352 (425)
T ss_pred EEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccccc
Confidence 99999986521 1111122 5899999998877 555 788899999999999987666 8889999776665555
Q ss_pred eccCCccEEEEEecCCeEEEEEccCCCceeEecCC
Q 001160 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1134)
Q Consensus 506 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 540 (1134)
+-++....+++++.|...|+|.++.+....+++..
T Consensus 353 ~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 353 HVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 55555578999999999999999988777665544
No 318
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.49 E-value=0.00047 Score=67.39 Aligned_cols=137 Identities=11% Similarity=-0.022 Sum_probs=90.8
Q ss_pred cEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcce
Q 001160 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 591 (1134)
Q Consensus 512 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 591 (1134)
.+++.|+..+.+.--|..++........ +.++.+-+.- -|++++.+.. .+.+++.+..+|.....+..... .-
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~~-vk 96 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILET-VK 96 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehhh-hc
Confidence 5677777777777777776665554332 2233322222 4667887775 66799999999988887766543 22
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc-CCCEEEEEeCCCcEEE
Q 001160 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 658 (1134)
Q Consensus 592 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~i 658 (1134)
......+++..+.+|+.|+..+..|..+...+...+..+.. ..+-+..+ ++.+. .+...|.+.-
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly-~a~t~G~vla 161 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLY-AAITAGAVLA 161 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEE-EEeccceEEE
Confidence 23557888999999999999999999999998887765442 23344555 44444 3444444433
No 319
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.44 E-value=6.6e-07 Score=62.81 Aligned_cols=39 Identities=28% Similarity=0.587 Sum_probs=37.2
Q ss_pred ceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEe
Q 001160 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1134)
Q Consensus 914 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd 952 (1134)
|+++.++.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999999999999999999997
No 320
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.42 E-value=5.8e-05 Score=78.94 Aligned_cols=284 Identities=10% Similarity=0.102 Sum_probs=160.3
Q ss_pred CcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe----------CCCeEEEEECCCCeeEEEEeCCCC-----
Q 001160 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----------DEFQIKFWDMDNMNMLTTVDADGG----- 631 (1134)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~----- 631 (1134)
++++++|..+++.+-.+..... ..+..+|+++.+++++ ..-.|.+||..+-.+...+..+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~---~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL---GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS---EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeecccC---CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 4599999999998877765433 3366899999988754 234699999999988887765532
Q ss_pred CCCcceEEEccCCCEEEEEeC--CCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCC
Q 001160 632 LPASPRLRFNKEGSLLAVTTS--DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPT 709 (1134)
Q Consensus 632 ~~~v~~~~~s~d~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1134)
......++++.||+++++... ...|.|.|+..+ +.+.++.-..+. .
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~-kvv~ei~~PGC~----------------------------~--- 141 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK-KVVGEIDTPGCW----------------------------L--- 141 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT-EEEEEEEGTSEE----------------------------E---
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCC-ceeeeecCCCEE----------------------------E---
Confidence 123456788899998776533 567888888776 333333221100 0
Q ss_pred CCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCcccee-EeecCCcccccceEEEEEecCCcceE
Q 001160 710 LERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK-ALRLPDSIAASKVVRLIYTNSGLSLL 788 (1134)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~ 788 (1134)
.-...+..+...+.||++....+.......... .+..+. ...-...-+++..+..++
T Consensus 142 --------------------iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~--~dp~f~~~~~~~~~~~~~ 199 (342)
T PF06433_consen 142 --------------------IYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPD--DDPLFEHPAYSRDGGRLY 199 (342)
T ss_dssp --------------------EEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTT--TS-B-S--EEETTTTEEE
T ss_pred --------------------EEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCC--CcccccccceECCCCeEE
Confidence 011223445666777777777776433222111 111111 122223344455554455
Q ss_pred EeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe----CC---
Q 001160 789 ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS----GG--- 861 (1134)
Q Consensus 789 ~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s----dg--- 861 (1134)
-.+-+|.|+--++......+ ..-|.+.+......... .+.-.-+++++....|.+-- +|
T Consensus 200 F~Sy~G~v~~~dlsg~~~~~---------~~~~~~~t~~e~~~~Wr-----PGG~Q~~A~~~~~~rlyvLMh~g~~gsHK 265 (342)
T PF06433_consen 200 FVSYEGNVYSADLSGDSAKF---------GKPWSLLTDAEKADGWR-----PGGWQLIAYHAASGRLYVLMHQGGEGSHK 265 (342)
T ss_dssp EEBTTSEEEEEEETTSSEEE---------EEEEESS-HHHHHTTEE-----E-SSS-EEEETTTTEEEEEEEE--TT-TT
T ss_pred EEecCCEEEEEeccCCcccc---------cCcccccCccccccCcC-----CcceeeeeeccccCeEEEEecCCCCCCcc
Confidence 56667777766654322111 11222211110000000 22233467776555444321 22
Q ss_pred ----eEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEe-CCCcEEEEEcCCceEEEEecC
Q 001160 862 ----KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVRVDEVKTKLKG 922 (1134)
Q Consensus 862 ----~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~-~dg~i~iwd~~~~~~~~~l~~ 922 (1134)
.|.++|+.+++.+.++.. ..++.+|+++.++..+|.+.+ .++.+.+||..+|+.+.++.+
T Consensus 266 dpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 266 DPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp S-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 399999999999999874 346889999996666776554 578999999999999988874
No 321
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.40 E-value=8.2e-05 Score=88.06 Aligned_cols=279 Identities=11% Similarity=0.179 Sum_probs=158.2
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
.+.|.++.|.-++..+ +.+..+|.|.+-|..+..... ...-.+.|.+++||||++.++.
T Consensus 68 d~~i~s~~fl~d~~~i-~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~l 126 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSI-CVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLAL 126 (1265)
T ss_pred CcceEEEEEecccceE-EEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEEE
Confidence 3589999999999854 456778999998887765432 2345678999999999999999
Q ss_pred EeCCCeEEEEEcCCCCccceeeEEec---ccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee-eEEecCCCCCeE
Q 001160 426 AFSKHIVHLYTYNPTGELRQHLEIDA---HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVY 501 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~---h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~-~~~~~~h~~~v~ 501 (1134)
.+..+++.+-+.. -..+... .+.. ..+..-.+-|-....+ +-|+ .|....-+...... +... .-.+.=+
T Consensus 127 iT~~~tll~mT~~-f~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~-~~~~~~~ 199 (1265)
T KOG1920|consen 127 ITGRQTLLFMTKD-FEPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQI-EQDDHKT 199 (1265)
T ss_pred EeCCcEEEEEecc-ccchhcc-ccccccccccccceeccccccee---eecc-hhhhcccccccccccccch-hhccCCc
Confidence 9988887765432 1111100 0100 0111222333222211 1111 11111111000000 0000 0112234
Q ss_pred EEEeeccCCccEEEEE-----ecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC
Q 001160 502 SVCPHHKESIQFIFST-----AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1134)
Q Consensus 502 ~i~~~~~~~~~~l~s~-----~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1134)
+|.| .+||+++++. ...+.|++||-+ +.....-....+.-.+++|-|.|..+++.....+ ++.|.++..+.
T Consensus 200 ~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErNG 275 (1265)
T KOG1920|consen 200 SISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERNG 275 (1265)
T ss_pred eEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecCC
Confidence 5666 5677888883 233789999876 2222222223334568999999999998775443 55788887432
Q ss_pred ---CeeEEEecCccCcceEEEEEeCCCCEEEE---EeCCCeEEEEECCCCeeE--EEEeCCCCCCCcceEEEccCC-CEE
Q 001160 577 ---GAIKRTYSGFRKRSLGVVQFDTTRNRFLA---AGDEFQIKFWDMDNMNML--TTVDADGGLPASPRLRFNKEG-SLL 647 (1134)
Q Consensus 577 ---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~d~-~~l 647 (1134)
|+....+..... .+..++|+.++..|++ ......|++|-..+.... +.+..... .-+.|+|.. ..+
T Consensus 276 L~hg~f~l~~p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~~~L 350 (1265)
T KOG1920|consen 276 LRHGEFVLPFPLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTEKTL 350 (1265)
T ss_pred ccccccccCCccccc-chheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCceeE
Confidence 222222333332 4889999999999887 455666999999876533 33333322 227888832 334
Q ss_pred EEEeCCCcEEEEEC
Q 001160 648 AVTTSDNGIKILAN 661 (1134)
Q Consensus 648 ~~~~~dg~i~iw~~ 661 (1134)
..-..+|...+++.
T Consensus 351 ~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 351 HVLRESGQRLVRDF 364 (1265)
T ss_pred EEEecCCcEEEEEE
Confidence 44446666666554
No 322
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.40 E-value=4.6e-06 Score=94.77 Aligned_cols=178 Identities=17% Similarity=0.215 Sum_probs=133.6
Q ss_pred CCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEE
Q 001160 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 929 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~ 929 (1134)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|..+.+.+.++.+|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 445666776 888999999998888877666656776666 6789999999999999999999999999999999977
Q ss_pred EEEecCCCEEEEEcC---------CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCC--cEEEEEECCeEE
Q 001160 930 LAFSPTLNALVSSGA---------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ--THLLVVHESQIS 998 (1134)
Q Consensus 930 l~~s~d~~~l~s~~~---------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg--~~l~~~~d~~v~ 998 (1134)
+.. .|+.|+|||. |.-|+|||+..-+.+.. +..+.+ ..-+.|.|.= +..+++..|...
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P--I~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP--IQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCC--cccccC-------chhhhhcccccceEEEEeccccee
Confidence 655 6889999983 56689999988664432 222222 2446677743 334446788888
Q ss_pred EEeC----CC-cceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001160 999 VYDS----KL-ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045 (1134)
Q Consensus 999 vwd~----~~-~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd 1045 (1134)
+-|. +. ..+..+.+ ....+.++++|++|+.+|.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p---~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNP---NGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEcc---CCCcceeEEecCCCceEEEecccCcEeeec
Confidence 8884 11 11122222 145599999999999999999999999998
No 323
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.40 E-value=0.0012 Score=70.64 Aligned_cols=299 Identities=14% Similarity=0.119 Sum_probs=147.2
Q ss_pred ccccceEEEEecCCCC------eeEEEEecCCCeEEEEEeCCC--cEEEEEccCccccccccceeecccccccccccccc
Q 001160 333 DDLTKTVVRTLNQGSN------VMSMDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (1134)
Q Consensus 333 ~~~~~~~~~~l~h~~~------V~~v~~spdg~~llasg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 404 (1134)
|..++..+..|.+... .+.=+|.+||++||+++..|| .+.+-|+.+++..+ |
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------L 75 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------L 75 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---------------------
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------C
Confidence 4456666666653322 223478999998999888777 55566777776553 2
Q ss_pred ccCC-cCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEe--cCCCcEEEEEEc-------
Q 001160 405 NDAA-ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA--HPNKQLCIVTCG------- 474 (1134)
Q Consensus 405 ~~h~-~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s--~d~~~~~l~sg~------- 474 (1134)
.... .......++|+++.++-......++--|+++.+... .+......+-...|. .|+. .++..-
T Consensus 76 Tdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~---vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~ 150 (386)
T PF14583_consen 76 TDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV---VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWK 150 (386)
T ss_dssp --SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE---EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG--
T ss_pred ccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEE---EEECCcccccccceeeCCCcc--EEEEEEEeehhcc
Confidence 2222 223356778999988777667789999999876432 333345555456664 3454 333221
Q ss_pred ---------------CCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEe---cCCe-EEEEEccCCCcee
Q 001160 475 ---------------DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGK-IKAWLYDYLGSRV 535 (1134)
Q Consensus 475 ---------------~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~---~d~~-i~~wd~~~~~~~~ 535 (1134)
..+.|.--|+.+|+....+. -...+..+.|+|..+ ..|.-|- .+.. -|+|-+++.....
T Consensus 151 ~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~ 228 (386)
T PF14583_consen 151 PLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNV 228 (386)
T ss_dssp ---SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---
T ss_pred CccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcc
Confidence 12345666778877544443 566788889998764 3333332 2221 3667665433322
Q ss_pred -EecC--CCCcEEEEEECCCCCEEEEEee-CCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC--
Q 001160 536 -DYDA--PGNWCTMMAYSADGTRLFSCGT-SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-- 609 (1134)
Q Consensus 536 -~~~~--~~~~v~~~~~s~~~~~l~~~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 609 (1134)
.+.. ....+.-=-|.|||..+...+. .+..+..|.-+|+.+++........ ....+..++||+.++-=|.|
T Consensus 229 ~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p 305 (386)
T PF14583_consen 229 KKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAP 305 (386)
T ss_dssp EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE----
T ss_pred eeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCC
Confidence 2221 2224455568999998876543 3333556888888887654332221 23345567898888763332
Q ss_pred --------------CeEEEEECCCCeeEEEEeCC--------CCCCCcceEEEccCCCEEEEEeC-CCcEEEEEC
Q 001160 610 --------------FQIKFWDMDNMNMLTTVDAD--------GGLPASPRLRFNKEGSLLAVTTS-DNGIKILAN 661 (1134)
Q Consensus 610 --------------g~i~iwd~~~~~~~~~~~~~--------~~~~~v~~~~~s~d~~~l~~~~~-dg~i~iw~~ 661 (1134)
--|+++++..+......... .....=....|+|||++|+..++ .|...||-+
T Consensus 306 ~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 306 VDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ---------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 25677888876654322210 00112256899999998876655 666666643
No 324
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.39 E-value=5.2e-05 Score=85.78 Aligned_cols=232 Identities=12% Similarity=0.036 Sum_probs=140.8
Q ss_pred cCCCEEEEEe--CCeEEEEECCCCeEEEEecC------C---------CCceE-----EEEEcCCCCcEEEE-EeCCCcE
Q 001160 850 KNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS------P---------PPAAT-----FLAFHPQDNNIIAI-GMEDSSV 906 (1134)
Q Consensus 850 ~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~------~---------~~~i~-----~l~~s~~~~~~las-g~~dg~i 906 (1134)
.||+|+..-. +..|...+++..++-+.+.- | +..|. .+-++| ||+.+.. .-..+.+
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Plpn-DGk~l~~~~ey~~~v 217 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPN-DGKDLDDPKKYRSLF 217 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCC-CCCEeecccceeEEE
Confidence 3899999887 57787788877665444321 1 11121 233455 5655432 2344678
Q ss_pred EEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCC----CcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEE
Q 001160 907 QIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD----AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 982 (1134)
Q Consensus 907 ~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D----~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f 982 (1134)
.+.|.++.+....+.-- +....++++|||+++.+.+.+ .++..-+..... .+....- -..-++
T Consensus 218 SvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d-----~~vvfni-------~~iea~ 284 (635)
T PRK02888 218 TAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD-----WVVVFNI-------ARIEEA 284 (635)
T ss_pred EEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCc-----eEEEEch-------HHHHHh
Confidence 88888887777665532 244678899999999887632 223222222111 0000000 001134
Q ss_pred CCCCcEEEEEECCeEEEEeCCC-----cceeccCCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEeCCCcceee--e
Q 001160 983 HNDQTHLLVVHESQISVYDSKL-----ECSRSWSPKDALPAPISSAIYSCDGLLVYAGF-CDGAIGVFDAETLRFRC--R 1054 (1134)
Q Consensus 983 spdg~~l~~~~d~~v~vwd~~~-----~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~-~dg~I~vwd~~~~~~~~--~ 1054 (1134)
.++|++..+ .+++|.+.|... ..+..+.+. ......+.+||||+++++++ .+.+|.|.|+.+.+... .
T Consensus 285 vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 285 VKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhCCCEEEE-CCCEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 567887666 467899999943 333333222 56788999999999877655 48899999999865311 0
Q ss_pred cCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCC
Q 001160 1055 IGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~ 1101 (1134)
+.....+ .........|+..+|++ +|+.+.|---|..|..|++.+
T Consensus 361 ~~~~~~v-vaevevGlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAV-VAEPELGLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceE-EEeeccCCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 1000000 00011236788999998 789999999999999999876
No 325
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=2.3e-05 Score=89.05 Aligned_cols=205 Identities=14% Similarity=0.103 Sum_probs=134.1
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccc-eEEEEEecCCCEEEEEcCCCc-----EEEEeCCCccccc-
Q 001160 888 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSPTLNALVSSGADAQ-----LCMWSIDKWEKLK- 960 (1134)
Q Consensus 888 ~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~-i~~l~~s~d~~~l~s~~~D~~-----i~iWd~~~~~~~~- 960 (1134)
+|++ ++..+|.|+.+|.|.+++ .+-+.+..++++... |+.+..-.+..+|++.+.|+. ++||+++.-+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4566 778899999999999987 345556778888777 555554445579999987764 8999998754333
Q ss_pred ceee--ecCCCCCCC--CcCceEEEECCCCcEEEEE-ECCeEEEEeC-----CCcceeccCCCCCCCCCeEEEEEccCCC
Q 001160 961 SRFI--QAPAGRQSP--LVGETKVQFHNDQTHLLVV-HESQISVYDS-----KLECSRSWSPKDALPAPISSAIYSCDGL 1030 (1134)
Q Consensus 961 ~~~~--~~~~~~~~~--~~~v~~~~fspdg~~l~~~-~d~~v~vwd~-----~~~~~~~~~~~~~h~~~v~~v~~s~dg~ 1030 (1134)
..++ .....+..+ ..++..++.|.+-+.+|+| .+|.|..+.- .+...... +.-..+|+.+++-.|++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~---~~~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYS---HRGKEPITGLALRSDGK 184 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeee---ccCCCCceeeEEecCCc
Confidence 2333 111111111 2578899999998888887 6788988865 12222211 22278999999999998
Q ss_pred EEEEEecCCcEEEEeCCCcce-eeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCccccCCC
Q 001160 1031 LVYAGFCDGAIGVFDAETLRF-RCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGT 1109 (1134)
Q Consensus 1031 ~l~~~~~dg~I~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~~ 1109 (1134)
.++.+.+-..|.+|.+....+ ++.+.. +....-|.++++..+ .+++++. ..|.+|+....++-|+.+
T Consensus 185 s~lFv~Tt~~V~~y~l~gr~p~~~~ld~----------~G~~lnCss~~~~t~-qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 185 SVLFVATTEQVMLYSLSGRTPSLKVLDN----------NGISLNCSSFSDGTY-QFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred eeEEEEecceeEEEEecCCCcceeeecc----------CCccceeeecCCCCc-cEEEecC-ceEEEEcCCCcceeeeec
Confidence 744445567899999984331 222331 224445777776443 3555543 468999987666666655
No 326
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.34 E-value=0.0001 Score=83.47 Aligned_cols=105 Identities=17% Similarity=0.156 Sum_probs=76.6
Q ss_pred EeccCCCEEEEEeCCeEEEEECCC-----CeEEEEecCCCCceEEEEEcCCCCcEEEEE-eCCCcEEEEEcCCceE----
Q 001160 847 ALSKNDSYVMSASGGKVSLFNMMT-----FKVMTMFMSPPPAATFLAFHPQDNNIIAIG-MEDSSVQIYNVRVDEV---- 916 (1134)
Q Consensus 847 ~~s~dg~~la~~sdg~i~vwd~~~-----~~~~~~~~~~~~~i~~l~~s~~~~~~lasg-~~dg~i~iwd~~~~~~---- 916 (1134)
++.+||++... .+++|.+.|..+ .+.+..+. -......+++|| ||++++++ ..+.+|.|.|+.+.+.
T Consensus 283 a~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 283 EAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 34457887665 467899999988 35555555 345678899999 77766554 5689999999987542
Q ss_pred --------EEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCC
Q 001160 917 --------KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1134)
Q Consensus 917 --------~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~ 955 (1134)
+....--. .-...+|.++|....|..-|..|..||+++
T Consensus 360 ~~~~~~~vvaevevGl-GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 360 KIKPRDAVVAEPELGL-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCccceEEEeeccCC-CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 33333222 235678999999888999999999999986
No 327
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.33 E-value=0.00022 Score=74.78 Aligned_cols=205 Identities=18% Similarity=0.177 Sum_probs=123.9
Q ss_pred EEEeccCCCEEEEEe---CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcC-CceEEEE-
Q 001160 845 CIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVKTK- 919 (1134)
Q Consensus 845 ~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~-~~~~~~~- 919 (1134)
.+++|.||+++.+.. .-.|.|.|+...+.+..+... .+..+--+ +++-+.+-|.||++.-..+. .|+...+
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~--~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPS--GNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEE--ETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEec--CCCceEEEecCCceEEEEECCCCCEeEee
Confidence 357888888888775 467999999999998887632 23333223 33457788899999998887 4554322
Q ss_pred ---ecCcccce-EEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCC---CC-CCcCceEEEECCCCcEEEE
Q 001160 920 ---LKGHQNRI-TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR---QS-PLVGETKVQFHNDQTHLLV 991 (1134)
Q Consensus 920 ---l~~h~~~i-~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~---~~-~~~~v~~~~fspdg~~l~~ 991 (1134)
|..-.+++ ..-+++.++..++-.+.+|.|+--|+......-.......... .. ..++-..+++++..++|.+
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 22222222 2334555566666677888888888776553222111111000 00 0133456888877766665
Q ss_pred E----ECC-------eEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCC-EEEEE-ecCCcEEEEeCCCcceeeecCC
Q 001160 992 V----HES-------QISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL-LVYAG-FCDGAIGVFDAETLRFRCRIGP 1057 (1134)
Q Consensus 992 ~----~d~-------~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~~~-~~dg~I~vwd~~~~~~~~~~~~ 1057 (1134)
- .++ .|.+||+ +.+.+..+.. ..++.+|++|.|.+ +|++. ..++.+.+||..+|+++.++..
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC----CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 2 221 3778888 6667766654 34688999999887 55444 4578999999999999988863
No 328
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.33 E-value=1.7e-06 Score=87.28 Aligned_cols=163 Identities=13% Similarity=0.199 Sum_probs=122.3
Q ss_pred EEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC----Cce
Q 001160 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL----GSR 534 (1134)
Q Consensus 459 l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~----~~~ 534 (1134)
++|+-+-.... ++.+.+..|-+-|+++|... .|. ..+.|.++.|.... .+++.|+..|.|..+|++.. ...
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~--nLv~~GcRngeI~~iDLR~rnqG~~~~ 291 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSD--NLVFNGCRNGEIFVIDLRCRNQGNGWC 291 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccC--CeeEecccCCcEEEEEeeecccCCCcc
Confidence 36654433213 55566778889999888653 343 66788888887655 79999999999999999876 333
Q ss_pred eEecCCCCcEEEEEECC-CCCEEEEEeeCCCCCCcEEEEeCCCCee---EEEecCccCcc-eEEEEEeCCCCEEEEEeCC
Q 001160 535 VDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRS-LGVVQFDTTRNRFLAAGDE 609 (1134)
Q Consensus 535 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d 609 (1134)
...-.|...|+++..-. ++.+|++.+. ++.|.+||.+.-+. +.++.||.... -.-+-+.+....++++|.|
T Consensus 292 a~rlyh~Ssvtslq~Lq~s~q~LmaS~M----~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 292 AQRLYHDSSVTSLQILQFSQQKLMASDM----TGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred eEEEEcCcchhhhhhhccccceEeeccC----cCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCe
Confidence 44455788888888777 7778877754 88899999997666 89999986522 1123456667789999999
Q ss_pred CeEEEEECCCCeeEEEEeCCC
Q 001160 610 FQIKFWDMDNMNMLTTVDADG 630 (1134)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~~~ 630 (1134)
...+||.++.+.++.+++...
T Consensus 368 cytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred eEEEEEecccCceeeccCCCC
Confidence 999999999999999887553
No 329
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=4.6e-06 Score=85.41 Aligned_cols=118 Identities=14% Similarity=0.212 Sum_probs=97.8
Q ss_pred HHHHHHHHHhhhhcchHHHHHHHHHhcCCC--------ccHHHHHHHhhcccHHHHHHHhcCccc-ccccchhhHHHHHH
Q 001160 6 RELVFLILQFLDEEKFKETVHKLEQESGFF--------FNMKHFEDQVQAGEWDEVERYLCGFTK-VEDNRYSMKIFFEI 76 (1134)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Esg~~--------~~~~~~~~~i~~g~w~~~~~~l~~l~~-~~~~~~~~~~~~~i 76 (1134)
.-+-|+|..||..+||.+||..|-++|.+. .++...++++++|+...|+.-...-.. +. +....+.|.+
T Consensus 116 ~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk--K~~S~lEf~l 193 (389)
T KOG0396|consen 116 NKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK--KEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccchhhhHH
Confidence 346799999999999999999999999886 237788999999999988776643211 11 1222478999
Q ss_pred HHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCcc
Q 001160 77 RKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFR 125 (1134)
Q Consensus 77 ~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 125 (1134)
..|.|+||+..+++.+|+.+.++.+.|...-+.++++....++..+...
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t 242 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYT 242 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCcccc
Confidence 9999999999999999999999999999887889999999998876554
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.31 E-value=0.00017 Score=80.57 Aligned_cols=289 Identities=12% Similarity=0.086 Sum_probs=167.5
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
+...|.--+++..++ +++.|+..|.+.+|+-.+++..... ..+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCc-eEEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhh
Confidence 344566666777777 6888999999999998887654321 223455677788999999999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeE--E-ecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe----eeEEecCCC
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLE--I-DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR----KQYTFEGHE 497 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~--~-~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~----~~~~~~~h~ 497 (1134)
.|+..|.|.++-++.+........ + ..|...|++++|++|+. .+++|...|.|..-.+.+.. ..+.+-...
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 999999999999887543322211 1 13678999999999999 79999999999998877621 122333345
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCC-C-cEEEEEECCC----CCEEEEEeeCCCCCCcEEE
Q 001160 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-N-WCTMMAYSAD----GTRLFSCGTSKEGESHLVE 571 (1134)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~-~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~ 571 (1134)
+.|-.+.... .+|+.++.-.. .+++.+.......-+... + .-...+|-|. .+-.+.|+. .-.++
T Consensus 171 s~IVQlD~~q----~~LLVStl~r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaR-----PG~Rl 240 (726)
T KOG3621|consen 171 SEIVQLDYLQ----SYLLVSTLTRC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCAR-----PGLRL 240 (726)
T ss_pred cceEEeeccc----ceehHhhhhhh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEec-----CCCce
Confidence 6666665432 23333333322 234444322111111111 1 1234445443 333444443 22788
Q ss_pred EeCC-CCeeEEEecCcc------C-----------------c-----ceEEEEEeCCCCEEEEEeCCCeEEEEECCCCee
Q 001160 572 WNES-EGAIKRTYSGFR------K-----------------R-----SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1134)
Q Consensus 572 wd~~-~~~~~~~~~~~~------~-----------------~-----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1134)
|..+ .|..+++..-.. . . ....+.+- .+.++++-++-| |+|+|..+...
T Consensus 241 Wead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l-~~~~vLa~te~G-iyv~d~~~~~v 318 (726)
T KOG3621|consen 241 WEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTL-HSDRVLAWTEVG-IYVFDSNNSQV 318 (726)
T ss_pred EEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEe-ecceEEEeecce-EEEEEeccceE
Confidence 8765 355444422100 0 0 00011111 122444444444 88888877665
Q ss_pred EEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhh
Q 001160 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1134)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 671 (1134)
+.-.... ..|.. .+..|+-|++-..|+.+++..+.+.++.+..+
T Consensus 319 ~l~se~~---~DI~d--Vs~~~neiFvL~~d~~l~~~sv~s~qr~l~~l 362 (726)
T KOG3621|consen 319 YLWSEGG---HDILD--VSHCGNEIFVLNLDRGLKVESVASRQRKLESL 362 (726)
T ss_pred EEeecCC---CceeE--EeecCceEEEEecCCceeEEEeehhHHHHHHH
Confidence 5444322 13433 34456677777778888888887765544433
No 331
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.28 E-value=2.7e-06 Score=59.63 Aligned_cols=39 Identities=23% Similarity=0.494 Sum_probs=36.9
Q ss_pred CeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 001160 871 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 910 (1134)
Q Consensus 871 ~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd 910 (1134)
++++.++.+|.+.|++++|+| ++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467899999999999999999 899999999999999997
No 332
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.26 E-value=3.8e-06 Score=79.98 Aligned_cols=134 Identities=20% Similarity=0.214 Sum_probs=97.8
Q ss_pred HHHHHHHhhcccHHHHHHHhcCcccccccchhhHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHH
Q 001160 38 MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQ 117 (1134)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~ 117 (1134)
...++++|++|+++.|+..+....+.-... ...+.|.|+.|+|+|+|..++..+|+.+.|+.+.|......+.++++..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~-~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR-NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc-CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 567899999999999999998764321111 1238899999999999999999999999999987664335678888888
Q ss_pred hhcccCccc--hhhhccCCCchhHHHHHHHHHHhhcccCccccccCCCCCCc-hhHHHHHHHHHHHHH
Q 001160 118 LLTLDNFRQ--NEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFK-SSRLRTLINQSLNWQ 182 (1134)
Q Consensus 118 l~~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~q~~~~Q 182 (1134)
++...+..+ ...+..+-+. ..|+.+.+.+.+.+-...- +| .+.|+.++++....+
T Consensus 84 lL~~~~~~~~~~s~~~~l~~~-~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELLSP-ERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHcCCcccccchHHHHHhCh-HHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 888776654 2333333333 6788999988887654221 23 457888888765443
No 333
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.00011 Score=83.61 Aligned_cols=200 Identities=16% Similarity=0.195 Sum_probs=130.4
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCC-----cEEEEECCCC--
Q 001160 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-----MIKVWDVVAG-- 487 (1134)
Q Consensus 415 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~-----~i~iwd~~~~-- 487 (1134)
+|++.+..+|.|+.+|.|.+.+-.- .....++++...|...-+.-+++. +|++-+.|+ .|+|||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~----~~~~~fqa~~~siv~~L~~~~~~~-~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSF----QLIRGFQAYEQSIVQFLYILNKQN-FLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccc----eeeehheecchhhhhHhhcccCce-EEEEEeecCCCCceEEEEecccccCC
Confidence 4788999999999999888877432 222356667666333333444433 677666554 5899998632
Q ss_pred ----eeeE--EecC-----CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC---Ccee-EecCCCCcEEEEEECCC
Q 001160 488 ----RKQY--TFEG-----HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL---GSRV-DYDAPGNWCTMMAYSAD 552 (1134)
Q Consensus 488 ----~~~~--~~~~-----h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~-~~~~~~~~v~~~~~s~~ 552 (1134)
.+++ .+.+ ...++.+++++.+- ..+|.|-.+|.|.++.-+-. .... .......+|+.+++..+
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l--~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL--KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEccc--cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 2331 2222 35678888887664 89999999999999853321 1122 22334569999999999
Q ss_pred CCEEEEEeeCCCCCCcEEEEeCCCCeeEEE-ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEe
Q 001160 553 GTRLFSCGTSKEGESHLVEWNESEGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1134)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1134)
++.++.+.. ...|.+|.+....+... +..+ +..++|.+|++....+++++. ..+.+|+.....+...+.
T Consensus 183 ~~s~lFv~T----t~~V~~y~l~gr~p~~~~ld~~-G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVAT----TEQVMLYSLSGRTPSLKVLDNN-GISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEe----cceeEEEEecCCCcceeeeccC-CccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 988332222 44589999884443333 4444 448999999987765776654 469999988666555554
No 334
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.17 E-value=0.0004 Score=77.52 Aligned_cols=266 Identities=13% Similarity=0.163 Sum_probs=142.5
Q ss_pred CccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcccccccccee-eccccccc--cccccccccCC
Q 001160 332 QDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKV-WDISAASM--PLQNALLNDAA 408 (1134)
Q Consensus 332 ~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~l~~h~ 408 (1134)
.|..+++..........+....|||+|+.++++- ++.|.+++..++...+- +..- -.+..+.. ..+..++
T Consensus 28 ~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~--~~nly~~~~~~~~~~~l-T~dg~~~i~nG~~dwvyeEEv~---- 100 (353)
T PF00930_consen 28 YDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR--DNNLYLRDLATGQETQL-TTDGEPGIYNGVPDWVYEEEVF---- 100 (353)
T ss_dssp EETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE--TTEEEEESSTTSEEEES-ES--TTTEEESB--HHHHHHTS----
T ss_pred EecCCCceEECcCCccccccceeecCCCeeEEEe--cCceEEEECCCCCeEEe-ccccceeEEcCccceecccccc----
Confidence 3444444433333467899999999999655443 78999999877744321 1000 00000000 0111111
Q ss_pred cCeEEEEEcCCCCEEEEEeCC-C-----------------------------------eEEEEEcCCCCccceeeE--Ee
Q 001160 409 ISVNRCVWGPDGLMLGVAFSK-H-----------------------------------IVHLYTYNPTGELRQHLE--ID 450 (1134)
Q Consensus 409 ~~V~~i~~spdg~~las~~~d-g-----------------------------------~i~iwd~~~~~~~~~~~~--~~ 450 (1134)
+.-..+-|||||++||....| . .+.|+|+.+++....... +.
T Consensus 101 ~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~ 180 (353)
T PF00930_consen 101 DRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLN 180 (353)
T ss_dssp SSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHH
T ss_pred ccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccC
Confidence 223568899999999976322 1 144455555443211000 01
Q ss_pred cccCCeeEEEEecCCCcEEEEEEcCCC---cEEEEECCCCeeeEEecC-CCCCe---EEEEee-ccCCccEEEEEecCCe
Q 001160 451 AHVGGVNDIAFAHPNKQLCIVTCGDDK---MIKVWDVVAGRKQYTFEG-HEAPV---YSVCPH-HKESIQFIFSTAIDGK 522 (1134)
Q Consensus 451 ~h~~~v~~l~~s~d~~~~~l~sg~~d~---~i~iwd~~~~~~~~~~~~-h~~~v---~~i~~~-~~~~~~~l~s~~~d~~ 522 (1134)
.-..-+..+.|.++++.+++.....+. .+.++|..++.+...+.. ..+.| ....+. +.+ +.++.....||-
T Consensus 181 ~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~-~~~l~~s~~~G~ 259 (353)
T PF00930_consen 181 PQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDG-NEFLWISERDGY 259 (353)
T ss_dssp TSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTS-SEEEEEEETTSS
T ss_pred CCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCC-CEEEEEEEcCCC
Confidence 223457889999998854555555444 466788877765433321 22222 244444 333 356666668887
Q ss_pred EEEEEccCCCce-eEecCCCCcEE-EEEECCCCCEEEEEee-CCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCC
Q 001160 523 IKAWLYDYLGSR-VDYDAPGNWCT-MMAYSADGTRLFSCGT-SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599 (1134)
Q Consensus 523 i~~wd~~~~~~~-~~~~~~~~~v~-~~~~s~~~~~l~~~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~ 599 (1134)
-++|-++..... ..+....-.|. -+.++++++.++..+. .......|+..++..+..+..+..... .-..+.|+|+
T Consensus 260 ~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~-~~~~~~~Spd 338 (353)
T PF00930_consen 260 RHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDG-DHYSASFSPD 338 (353)
T ss_dssp EEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSS-TTEEEEE-TT
T ss_pred cEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCC-CceEEEECCC
Confidence 666655544433 34444444664 4778898888774443 222355677777773444555655443 2257999999
Q ss_pred CCEEEEE
Q 001160 600 RNRFLAA 606 (1134)
Q Consensus 600 ~~~l~~~ 606 (1134)
+++++..
T Consensus 339 g~y~v~~ 345 (353)
T PF00930_consen 339 GKYYVDT 345 (353)
T ss_dssp SSEEEEE
T ss_pred CCEEEEE
Confidence 9988764
No 335
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.00012 Score=75.91 Aligned_cols=237 Identities=12% Similarity=0.095 Sum_probs=138.1
Q ss_pred EEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCC-CEEEE
Q 001160 863 VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL-NALVS 941 (1134)
Q Consensus 863 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~-~~l~s 941 (1134)
+++.+..+.+....+.++...|..++|||....++..++.+..|.|.|+.+..++..+..| ..+++++|.-|. +++..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 6777777777777777888899999999955558899999999999999999999999888 789999998775 56777
Q ss_pred EcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEE------ECCCCcEEEEEECCeEEEEeC--CCcceeccCCC
Q 001160 942 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQ------FHNDQTHLLVVHESQISVYDS--KLECSRSWSPK 1013 (1134)
Q Consensus 942 ~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------fspdg~~l~~~~d~~v~vwd~--~~~~~~~~~~~ 1013 (1134)
|...|.|.|+|+...+...........- .+|..++ ..+.|.+|+.+ --....|+. ...+.......
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~-----~pv~~i~~~~~n~~f~~gglLv~~-lt~l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTI-----NPVHKIAPVQPNKIFTSGGLLVFA-LTVLQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhcc-----CcceeecccCccccccccceEEee-ehhhhhhhhhccccCCCccccc
Confidence 7789999999998765432222211111 1223222 23334444432 223456666 22222221111
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecC-C------cEE-EEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEE
Q 001160 1014 DALPAPISSAIYSCDGLLVYAGFCD-G------AIG-VFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQI 1085 (1134)
Q Consensus 1014 ~~h~~~v~~v~~s~dg~~l~~~~~d-g------~I~-vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 1085 (1134)
+..+...++++.+-.+.++..-.. - .|- --|-.+|..++..+...+.... .. ....-..+.+.+.++|
T Consensus 328 -e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~--~k-l~t~~ai~~~~~nn~i 403 (463)
T KOG1645|consen 328 -EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQ--TK-LSTTQAIRAVEDNNYI 403 (463)
T ss_pred -CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcc--cc-cccccceeccccccEE
Confidence 114555666665544544333221 1 111 1233455555544432211000 00 1111122223354665
Q ss_pred EE-EeCCCcEEEEecCCCccccCCCC
Q 001160 1086 AL-GMSDGAVHVVEPSDAELKWGGTP 1110 (1134)
Q Consensus 1086 ~s-~~~Dg~v~vW~~~~~~~~~~~~~ 1110 (1134)
+. |+...++++||+...+....++-
T Consensus 404 v~~gd~tn~lil~D~~s~evvQ~l~~ 429 (463)
T KOG1645|consen 404 VVVGDSTNELILQDPHSFEVVQTLAL 429 (463)
T ss_pred EEecCCcceeEEeccchhheeeeccc
Confidence 54 55667899999998885555543
No 336
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.10 E-value=0.047 Score=64.26 Aligned_cols=224 Identities=11% Similarity=0.092 Sum_probs=122.5
Q ss_pred CEEEEEeCCeEEEEECCCCeE--EEEecCCCCceEEEEEcCCCCcEEEEEeCC--------------CcEEEEEcCCceE
Q 001160 853 SYVMSASGGKVSLFNMMTFKV--MTMFMSPPPAATFLAFHPQDNNIIAIGMED--------------SSVQIYNVRVDEV 916 (1134)
Q Consensus 853 ~~la~~sdg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~~lasg~~d--------------g~i~iwd~~~~~~ 916 (1134)
..++++..+.+++.-++.-+. ++++.- ......+++.+ ...++++.+.- ..++++|-.+.+.
T Consensus 685 d~l~~~~~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v 762 (1096)
T KOG1897|consen 685 DSLASANGGALTIGTIDEIQKLHIRTVPL-GESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV 762 (1096)
T ss_pred ceEEEecCCceEEEEecchhhcceeeecC-CCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence 456666677777776654322 233322 22345556655 34444433311 2467777666554
Q ss_pred EEEecCc----ccceEEEEEecC-CCEEEEEc----------CCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEE
Q 001160 917 KTKLKGH----QNRITGLAFSPT-LNALVSSG----------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQ 981 (1134)
Q Consensus 917 ~~~l~~h----~~~i~~l~~s~d-~~~l~s~~----------~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 981 (1134)
+...+-. .-.|.++.|..| +.+++.|. ..|.|.++.+...+.++...-.... +.+ .+
T Consensus 763 l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~------Gav--~a 834 (1096)
T KOG1897|consen 763 LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVK------GAV--YA 834 (1096)
T ss_pred EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeec------cce--ee
Confidence 4432211 113555568877 66776664 2366777777763322211111111 112 22
Q ss_pred ECCCCcEEEEEECCeEEEEeCCCc-ceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE--eCCCcceeeecCCc
Q 001160 982 FHNDQTHLLVVHESQISVYDSKLE-CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVF--DAETLRFRCRIGPS 1058 (1134)
Q Consensus 982 fspdg~~l~~~~d~~v~vwd~~~~-~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vw--d~~~~~~~~~~~~~ 1058 (1134)
.---...++++-+..|++|+.+.+ .++. ...|..++..+...-.|..+++|.-=++|.+. +-..|...-..+
T Consensus 835 L~~fngkllA~In~~vrLye~t~~~eLr~---e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr-- 909 (1096)
T KOG1897|consen 835 LVEFNGKLLAGINQSVRLYEWTTERELRI---ECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR-- 909 (1096)
T ss_pred hhhhCCeEEEecCcEEEEEEccccceehh---hhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh--
Confidence 222234455566788999999444 4433 33447889999999999999999888887765 444443443222
Q ss_pred ccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecC
Q 001160 1059 AYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1059 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
-+. +.+.+++.+-. ++.++-+..+|.+++-...
T Consensus 910 D~~-------p~Wmtaveil~--~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 910 DYN-------PNWMTAVEILD--DDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred hhC-------ccceeeEEEec--CceEEeecccccEEEEEec
Confidence 111 23444555543 4566667778888887654
No 337
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.00025 Score=80.36 Aligned_cols=147 Identities=16% Similarity=0.245 Sum_probs=104.4
Q ss_pred ccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCC----CCcEEEEEeCCCcEEEEEcC--CceEEEEec
Q 001160 849 SKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ----DNNIIAIGMEDSSVQIYNVR--VDEVKTKLK 921 (1134)
Q Consensus 849 s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~----~~~~lasg~~dg~i~iwd~~--~~~~~~~l~ 921 (1134)
..+|.++|+|+ ||+|.|..+.+.+...++. ...++.+++++|+ ..+.+++|+.-| +.++.-. ..+.-..+.
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~ 157 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS 157 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee
Confidence 56899999999 9999999998887776665 4568999999993 256788899888 8777532 112112455
Q ss_pred CcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEe
Q 001160 922 GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD 1001 (1134)
Q Consensus 922 ~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd 1001 (1134)
.-.++|.++.| .|+++|-++.+| |+++|+.+++.+.. +..+.....+..-...+.|.++.+ |++|-..+|++..
T Consensus 158 ~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~--i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~ 231 (846)
T KOG2066|consen 158 EGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTN--IPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICS 231 (846)
T ss_pred cCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeec--cCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEE
Confidence 66788999999 588999999888 99999998775432 222222222223456788887765 4555556777777
Q ss_pred CC
Q 001160 1002 SK 1003 (1134)
Q Consensus 1002 ~~ 1003 (1134)
++
T Consensus 232 I~ 233 (846)
T KOG2066|consen 232 IK 233 (846)
T ss_pred Ee
Confidence 63
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.08 E-value=0.00047 Score=77.58 Aligned_cols=222 Identities=15% Similarity=0.162 Sum_probs=121.9
Q ss_pred CCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEE
Q 001160 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 919 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~ 919 (1134)
......+.++|+|++++++++|...|+.......... +.-...+|++ .++ +|+-...++|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 4457889999999999999999999999665554332 3445688988 666 55566688999974323333233
Q ss_pred ecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEE
Q 001160 920 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISV 999 (1134)
Q Consensus 920 l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~v 999 (1134)
++.. ..+..|.. |.+|...+.+ .|.+||+++++.+ ....- ..|..+.|+++|.+++...+..+.+
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i-----~~i~v-----~~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLI-----RRIDV-----SAVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EE-----EEESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHccee-----eEEec-----CCCcEEEEECCCCEEEEEeCCeEEE
Confidence 3321 12444433 8888777655 7999999998743 33221 2378999999999999988899999
Q ss_pred EeCCCc------------ceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccC
Q 001160 1000 YDSKLE------------CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVS 1067 (1134)
Q Consensus 1000 wd~~~~------------~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 1067 (1134)
++.+.. ........ ...|.+.+|..| .++-.+.. .|+.+=-.....++.+..
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d--~fiYtT~~-~lkYl~~Ge~~~i~~ld~---------- 233 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED--CFIYTTSN-HLKYLVNGETGIIAHLDK---------- 233 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TT-EEEEEETTEEEEEEE-SS----------
T ss_pred EEecchhcccccccCchhceEEEEEe---cceeEEEEEEcC--EEEEEcCC-eEEEEEcCCcceEEEcCC----------
Confidence 888555 33333221 467888899777 44434344 777632222222333321
Q ss_pred CCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1068 NTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1068 ~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
..+.+. +.| +.+.+.....|+.+..+.+.-.+
T Consensus 234 -~~yllg--y~~-~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 234 -PLYLLG--YLP-KENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp ---EEEE--EET-TTTEEEEE-TT--EEEEE--HHH
T ss_pred -ceEEEE--EEc-cCCEEEEEECCCCEEEEEECHHH
Confidence 234333 444 34788888899999888776444
No 339
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.00011 Score=83.25 Aligned_cols=188 Identities=14% Similarity=0.146 Sum_probs=130.2
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCccccc
Q 001160 881 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 960 (1134)
Q Consensus 881 ~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~ 960 (1134)
...++|++++. ++++.|+.+|.|++++... .. .+...|+.. .-+|.+++||+.||+|.|-.+-+.+...
T Consensus 39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhhc---ceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 34678888864 7999999999999999764 33 444446554 5679999999999999999998876433
Q ss_pred ceeeecCCCCCCCCcCceEEEECCC-----CcEEEEEECCeEEEEeCC--CcceeccCCCCCCCCCeEEEEEccCCCEEE
Q 001160 961 SRFIQAPAGRQSPLVGETKVQFHND-----QTHLLVVHESQISVYDSK--LECSRSWSPKDALPAPISSAIYSCDGLLVY 1033 (1134)
Q Consensus 961 ~~~~~~~~~~~~~~~~v~~~~fspd-----g~~l~~~~d~~v~vwd~~--~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~ 1033 (1134)
..-.. .++..++++|| .+++++|+...+.++.-+ ++.... ......++|.++.| .|.++|
T Consensus 108 ~~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v--~l~~~eG~I~~i~W--~g~lIA 174 (846)
T KOG2066|consen 108 QYDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSV--VLSEGEGPIHSIKW--RGNLIA 174 (846)
T ss_pred eEecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccce--eeecCccceEEEEe--cCcEEE
Confidence 22111 35789999999 567777655448787751 221111 12223789999999 566777
Q ss_pred EEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecC
Q 001160 1034 AGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1034 ~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
=++.+ -|+|||..+++.+..+...... ...+..+-.+.|.+ ...|+.|= -.+|.+-.+.
T Consensus 175 Wand~-Gv~vyd~~~~~~l~~i~~p~~~----~R~e~fpphl~W~~--~~~LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 175 WANDD-GVKVYDTPTRQRLTNIPPPSQS----VRPELFPPHLHWQD--EDRLVIGW-GDSVKICSIK 233 (846)
T ss_pred EecCC-CcEEEeccccceeeccCCCCCC----CCcccCCCceEecC--CCeEEEec-CCeEEEEEEe
Confidence 66544 5999999999999888765422 12335566788886 35666664 3468888776
No 340
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.02 E-value=0.0051 Score=71.80 Aligned_cols=191 Identities=10% Similarity=0.077 Sum_probs=115.9
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCCC------CeE--EEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEA------PVY--SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~------~v~--~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 540 (1134)
.++.++.++.|+-.|..+|+.+..+..... .+. .+.+ . ++..++.++.++.|..+|.++++.+......
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~--~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY--W-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE--c-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 466777789999999999998876653322 010 0111 1 1157888889999999999999988876654
Q ss_pred CCc-----E-EEEEECCCCCEEEEEeeCCC-----CCCcEEEEeCCCCeeEEEecCccC-------------------cc
Q 001160 541 GNW-----C-TMMAYSADGTRLFSCGTSKE-----GESHLVEWNESEGAIKRTYSGFRK-------------------RS 590 (1134)
Q Consensus 541 ~~~-----v-~~~~~s~~~~~l~~~~~~~~-----~~~~i~~wd~~~~~~~~~~~~~~~-------------------~~ 590 (1134)
... + .+..+. +..++.++.+.+ .++.++.+|..+|+.+-.+..... ..
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 331 1 111221 244444432211 257799999999998877654311 00
Q ss_pred e-EEEEEeCCCCEEEEEeCCC------------------eEEEEECCCCeeEEEEeCCCCCC----CcceEEEc----cC
Q 001160 591 L-GVVQFDTTRNRFLAAGDEF------------------QIKFWDMDNMNMLTTVDADGGLP----ASPRLRFN----KE 643 (1134)
Q Consensus 591 v-~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~----~v~~~~~s----~d 643 (1134)
+ ...++.+.+..++.++.++ .|.-+|..+|+..-..+...+.. ......+. -+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 1 1244555567777776554 78889999998887765321100 00011111 13
Q ss_pred CC---EEEEEeCCCcEEEEECCCc
Q 001160 644 GS---LLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 644 ~~---~l~~~~~dg~i~iw~~~~~ 664 (1134)
|. .++.++.+|.+..+|..+|
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG 321 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTG 321 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCC
Confidence 33 5677778888888888887
No 341
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.00066 Score=76.08 Aligned_cols=204 Identities=12% Similarity=0.084 Sum_probs=123.5
Q ss_pred cccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc
Q 001160 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1134)
+...|.--+++..+++++.|++.|.+.+|+-..+ +.......+ - .+.+....+|+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~----------------------~~~~~~~~~--~-~~~~~~~~vs~ 86 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTG----------------------EMRKLKNEG--A-TGITCVRSVSS 86 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCch----------------------hhhcccccC--c-cceEEEEEecc
Confidence 4455666677888999999999999999974322 111111111 1 45667788899
Q ss_pred CCCEEEEEe-CCeEEEEECCCCeE---E--EEe-cCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce----EEEE
Q 001160 851 NDSYVMSAS-GGKVSLFNMMTFKV---M--TMF-MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE----VKTK 919 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~~~~~~---~--~~~-~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~----~~~~ 919 (1134)
+..++|.|+ .|.|.|+-+..... + ..+ ..|...|+|++|++ ++..+.+|...|+|..-.+.+.. ....
T Consensus 87 ~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~ 165 (726)
T KOG3621|consen 87 VEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQE 165 (726)
T ss_pred hhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccce
Confidence 999999998 78899998765321 1 111 23678899999999 99999999999999998887721 1122
Q ss_pred ecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCC----CcEEEEEECC
Q 001160 920 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND----QTHLLVVHES 995 (1134)
Q Consensus 920 l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd----g~~l~~~~d~ 995 (1134)
+..-.+.|..|... ++.+|++.... ..+.+++.+...+ +...... ...-...+|-|. .+-.+.+..-
T Consensus 166 il~~ds~IVQlD~~-q~~LLVStl~r--~~Lc~tE~eti~Q---IG~k~R~---~~~~~GACF~~g~~~~q~~~IycaRP 236 (726)
T KOG3621|consen 166 ILSEDSEIVQLDYL-QSYLLVSTLTR--CILCQTEAETITQ---IGKKPRK---SLIDFGACFFPGQCKAQKPQIYCARP 236 (726)
T ss_pred eeccCcceEEeecc-cceehHhhhhh--hheeecchhHHHH---hcCCCcC---CccccceEEeeccccCCCceEEEecC
Confidence 33345677777764 45555554433 3445554433110 1000000 011345566554 3444445555
Q ss_pred eEEEEeC--CCcceec
Q 001160 996 QISVYDS--KLECSRS 1009 (1134)
Q Consensus 996 ~v~vwd~--~~~~~~~ 1009 (1134)
..++|.+ .|..+++
T Consensus 237 G~RlWead~~G~V~~T 252 (726)
T KOG3621|consen 237 GLRLWEADFAGEVIKT 252 (726)
T ss_pred CCceEEeecceeEEEe
Confidence 5667765 4444443
No 342
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=97.99 E-value=9.2e-06 Score=50.19 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhhhcchHHHHHHHHHhc
Q 001160 6 RELVFLILQFLDEEKFKETVHKLEQES 32 (1134)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Es 32 (1134)
+++.+||++||.++||.+||++|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 579999999999999999999999996
No 343
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.99 E-value=0.0056 Score=71.48 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=65.6
Q ss_pred EEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEE------------------eCCCcEEEEEcCCc
Q 001160 854 YVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG------------------MEDSSVQIYNVRVD 914 (1134)
Q Consensus 854 ~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg------------------~~dg~i~iwd~~~~ 914 (1134)
.+++++ +|.+...|..+|+.+...... ...++.+| ..+..+ ..+|.+.-.|+.+|
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG 376 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG 376 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence 455666 899999999999988776421 11233333 222222 24678888899999
Q ss_pred eEEEEecCcc--------cceE--EEEEecCCCEEEEEcCCCcEEEEeCCCcccccc
Q 001160 915 EVKTKLKGHQ--------NRIT--GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961 (1134)
Q Consensus 915 ~~~~~l~~h~--------~~i~--~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~ 961 (1134)
+.+....... .+.. .++ -.+..|+.++.|+.|+.+|.++|+.+-.
T Consensus 377 ~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~~lW~ 431 (488)
T cd00216 377 KVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGKELWK 431 (488)
T ss_pred cEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCceeeE
Confidence 8887765321 1111 122 2457788889999999999999996544
No 344
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.97 E-value=0.0066 Score=69.91 Aligned_cols=250 Identities=12% Similarity=0.089 Sum_probs=139.7
Q ss_pred eeEEEEecCCCeEEEEEeCCC----cEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 349 VMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 349 V~~v~~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
+...++||||++++++-+..| .+++.|+.+|+.+.. . +. ...-..++|.+|++.|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~-----------------i~--~~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-G-----------------IE--NPKFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-E-----------------EE--EEESEEEEECTTSSEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-c-----------------cc--ccccceEEEeCCCCEEE
Confidence 446789999997666655555 599999999976542 0 11 11123499999999877
Q ss_pred EEeCC-----------CeEEEEEcCCCCccceeeEEecccCC--eeEEEEecCCCcEEEEEEcC-C-CcEEEEECCCC--
Q 001160 425 VAFSK-----------HIVHLYTYNPTGELRQHLEIDAHVGG--VNDIAFAHPNKQLCIVTCGD-D-KMIKVWDVVAG-- 487 (1134)
Q Consensus 425 s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~h~~~--v~~l~~s~d~~~~~l~sg~~-d-~~i~iwd~~~~-- 487 (1134)
....+ ..|..|.+.+...-. ...+...... ...+..++|++.++|.+.+. + ..+.+.|+..+
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~ 264 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS 264 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence 66432 247788887654321 1234443333 56888999999633333332 2 46888898775
Q ss_pred --eeeEEecCCCCCeE-EEEeeccCCccEEEEEe---cCCeEEEEEccCCCc---eeEecCCCCcEEEEEECCCCCEEEE
Q 001160 488 --RKQYTFEGHEAPVY-SVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADGTRLFS 558 (1134)
Q Consensus 488 --~~~~~~~~h~~~v~-~i~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1134)
.....+......+. .+... ++ .+++... ..+.|...++..... ...+..+...+.-..+...+++|+.
T Consensus 265 ~~~~~~~l~~~~~~~~~~v~~~--~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl 341 (414)
T PF02897_consen 265 PDAKPKLLSPREDGVEYYVDHH--GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVL 341 (414)
T ss_dssp SS-SEEEEEESSSS-EEEEEEE--TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEE
T ss_pred CcCCcEEEeCCCCceEEEEEcc--CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEE
Confidence 22333333333343 33332 21 3443332 345677778777663 2244444443333333445566665
Q ss_pred EeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEE--Ee--CCCeEEEEECCCCeeE
Q 001160 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA--AG--DEFQIKFWDMDNMNML 623 (1134)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~--~dg~i~iwd~~~~~~~ 623 (1134)
... .++...|+++++..+.....+.....+.|..+...++++.+.. .| .-++++.||+.+++..
T Consensus 342 ~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 342 SYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEE-ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 543 3456789999998555555555544445666666666655443 33 4467888899887754
No 345
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.95 E-value=0.00015 Score=82.93 Aligned_cols=183 Identities=10% Similarity=0.092 Sum_probs=129.4
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCC
Q 001160 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1134)
Q Consensus 419 dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~ 498 (1134)
++..++.|+-...+..+|+.+.+..+ ...--...|.-++. +++ ++.+|...|+|.+-|..+-+.++++..|++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r---~~~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETR---TTNVSASGVTIMRY--NNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeee---eeeccCCceEEEEe--cCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 55677888888889999999876554 22222334554543 466 899999999999999999999999999999
Q ss_pred CeEEEEeeccCCccEEEEEec---------CCeEEEEEccCCCceeEecCCCCcEEEEEECCCC-CEEEEEeeCCCCCCc
Q 001160 499 PVYSVCPHHKESIQFIFSTAI---------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESH 568 (1134)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~---------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~ 568 (1134)
.|..+.. .|+.|++++. |.-|+|||++..+.+..+..+.++ .-+.|.|.- ..+++++. .|+
T Consensus 219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~----sGq 289 (1118)
T KOG1275|consen 219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQ----SGQ 289 (1118)
T ss_pred ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEec----ccc
Confidence 9998865 3478888875 445899999987766554443332 345666643 34445543 566
Q ss_pred EEEEeCCC-Cee-EEEecCcc-CcceEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 001160 569 LVEWNESE-GAI-KRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1134)
Q Consensus 569 i~~wd~~~-~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 617 (1134)
..+-|..+ +.+ ...+..+. +..+..++++++++.++.|..+|.|.+|.-
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 77777432 111 22222222 224889999999999999999999999973
No 346
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.94 E-value=0.00042 Score=76.62 Aligned_cols=115 Identities=16% Similarity=0.219 Sum_probs=84.2
Q ss_pred CCceEEEEecc-CCCEEEEEe-----CCe----EEEEECCCCeEEEE---ecCCCCceEEEEEcCCCCcEEEEEeCCCcE
Q 001160 840 EESAACIALSK-NDSYVMSAS-----GGK----VSLFNMMTFKVMTM---FMSPPPAATFLAFHPQDNNIIAIGMEDSSV 906 (1134)
Q Consensus 840 ~~~i~~~~~s~-dg~~la~~s-----dg~----i~vwd~~~~~~~~~---~~~~~~~i~~l~~s~~~~~~lasg~~dg~i 906 (1134)
+....++.||. +...+.+.. +|. ..+|++...+..+. --.....|.+++++| +...|+.|+.||+|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 45567788887 344444432 343 56788766543322 113667899999999 88899999999999
Q ss_pred EEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcc
Q 001160 907 QIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 957 (1134)
Q Consensus 907 ~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~ 957 (1134)
.+||...+... +..+.-..+.++|+|+|.++++|+..|.+.+||+.-..
T Consensus 284 iLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 284 ILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 99998766332 22344557899999999999999999999999997643
No 347
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.94 E-value=0.0026 Score=70.62 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=80.4
Q ss_pred CceEEEECC-CCcEEEEE-----ECCe----EEEEeCCCcceec-cCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 001160 976 GETKVQFHN-DQTHLLVV-----HESQ----ISVYDSKLECSRS-WSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVF 1044 (1134)
Q Consensus 976 ~v~~~~fsp-dg~~l~~~-----~d~~----v~vwd~~~~~~~~-~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vw 1044 (1134)
.+.++.||- +...+.+. .+|. -.+|+.....++. -...-.+...|.+.+++|+...|+.|+.||+|.+|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 446788886 34444442 2333 3577772222221 11112347899999999999999999999999999
Q ss_pred eCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1045 DAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1045 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
|...+..... + ....|..++|+| +|.++++|+..|.+.+||+.-.-
T Consensus 287 D~~~~~t~~~-k-----------a~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 287 DTTRGVTLLA-K-----------AEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EcCCCeeeee-e-----------ecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCc
Confidence 9987643322 1 225577899999 78999999999999999986544
No 348
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.0024 Score=71.78 Aligned_cols=196 Identities=11% Similarity=0.095 Sum_probs=120.7
Q ss_pred EecccCCeeEEEEecCCCcEEEEEEcCC--CcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeE--E
Q 001160 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI--K 524 (1134)
Q Consensus 449 ~~~h~~~v~~l~~s~d~~~~~l~sg~~d--~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i--~ 524 (1134)
+..-...+..-+|+|+++.+..++-... ..+.++|+.+++....+. ..+.-..-+|+|++. .++++...||.. .
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~-~l~f~~~rdg~~~iy 265 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS-KLAFSSSRDGSPDIY 265 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC-EEEEEECCCCCccEE
Confidence 3334556778899999996433333333 369999999887655443 223334456777652 455556667764 5
Q ss_pred EEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEE
Q 001160 525 AWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL 604 (1134)
Q Consensus 525 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 604 (1134)
+.|+....... +....+.-..-.|+|||++++..+ ++.+...|.+++.+.+.. ..+..... .-..-.++|||++++
T Consensus 266 ~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~-~riT~~~~-~~~~p~~SpdG~~i~ 341 (425)
T COG0823 266 LMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQV-TRLTFSGG-GNSNPVWSPDGDKIV 341 (425)
T ss_pred EEcCCCCccee-cccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCce-eEeeccCC-CCcCccCCCCCCEEE
Confidence 55666555333 333333334778999999999876 455667788888887665 33322222 112677999999998
Q ss_pred EEeC-CCe--EEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCC
Q 001160 605 AAGD-EFQ--IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1134)
Q Consensus 605 ~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 653 (1134)
..+. +|. |.+.|+.++.....+.... ....-.|.++|..+...+..
T Consensus 342 ~~~~~~g~~~i~~~~~~~~~~~~~lt~~~---~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 342 FESSSGGQWDIDKNDLASGGKIRILTSTY---LNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEeccCCceeeEEeccCCCCcEEEccccc---cCCCCCcCCCCceEEEeccC
Confidence 8663 344 6677776666544443321 23456778888877665543
No 349
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.89 E-value=0.0057 Score=65.71 Aligned_cols=291 Identities=16% Similarity=0.110 Sum_probs=135.5
Q ss_pred ceEEEEEecCCcceEEeec-cCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCC
Q 001160 774 KVVRLIYTNSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1134)
Q Consensus 774 ~v~~~~~s~~g~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg 852 (1134)
.-+.=+|.+||+.|+.++. +|.-.+|-+ |+.+++..+..-.. ........++++.
T Consensus 37 YF~~~~ft~dG~kllF~s~~dg~~nly~l--------------------DL~t~~i~QLTdg~----g~~~~g~~~s~~~ 92 (386)
T PF14583_consen 37 YFYQNCFTDDGRKLLFASDFDGNRNLYLL--------------------DLATGEITQLTDGP----GDNTFGGFLSPDD 92 (386)
T ss_dssp -TTS--B-TTS-EEEEEE-TTSS-EEEEE--------------------ETTT-EEEE---SS-----B-TTT-EE-TTS
T ss_pred eecCCCcCCCCCEEEEEeccCCCcceEEE--------------------EcccCEEEECccCC----CCCccceEEecCC
Confidence 3344567889977665554 666666644 44555544321110 1122246677888
Q ss_pred CEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEc-CCCCcEEEEEe---CC-------------------CcEEE
Q 001160 853 SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFH-PQDNNIIAIGM---ED-------------------SSVQI 908 (1134)
Q Consensus 853 ~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s-~~~~~~lasg~---~d-------------------g~i~i 908 (1134)
+.++... +..++-.|+++.+....+..+..-+....|. ..|+..++-.- .| ..|.-
T Consensus 93 ~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 93 RALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp SEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred CeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 8887665 6789999999988766666666666555664 22555543221 11 13555
Q ss_pred EEcCCceEEEEecCcccceEEEEEecCCCEEEEEc----CCCc-EEEEeCCCcccccceeeecCCCCCCCCcCceEEEEC
Q 001160 909 YNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG----ADAQ-LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFH 983 (1134)
Q Consensus 909 wd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~----~D~~-i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs 983 (1134)
-|+.+|+....+. -..-+..+.|||....+++-+ .|.. -|||-+.+.......+..... ...+..=-|+
T Consensus 173 idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-----~e~~gHEfw~ 246 (386)
T PF14583_consen 173 IDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-----GESVGHEFWV 246 (386)
T ss_dssp EETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-----TEEEEEEEE-
T ss_pred EECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-----Cccccccccc
Confidence 5777777554444 334567899999655554433 3332 477876653322211111111 2456777899
Q ss_pred CCCcEEEE-EE-----CCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCC----------------c
Q 001160 984 NDQTHLLV-VH-----ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG----------------A 1040 (1134)
Q Consensus 984 pdg~~l~~-~~-----d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg----------------~ 1040 (1134)
|||..+.. +. +..|.-+|+ +++. ..+.. ......+.-++||++++-=+.|. .
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~~~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~ 321 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGER-RRLME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPW 321 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--E-EEEEE----E-SEEEEEE-TTSSEEEEEE-------------------E
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCc-eEEEe----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcE
Confidence 99998877 32 234666676 3333 22211 23455666679999877544442 4
Q ss_pred EEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEE-EEEeCCCcEEEEecC
Q 001160 1041 IGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQI-ALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1041 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l-~s~~~Dg~v~vW~~~ 1100 (1134)
|+++++.++......................--...|+| ||+++ .++...|...||-+.
T Consensus 322 i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSP-Dgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 322 IYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSP-DGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp EEEEETTTTEEEEEEE-------BTTBSSTT----EE-T-TSSEEEEEE-TTSS-EEEEEE
T ss_pred EEEeccccCceeeeeeccCcceeecCCCccCCCCCccCC-CCCEEEEECCCCCCccEEEEe
Confidence 677888877654222211000000000111223588999 55554 466677877776543
No 350
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.89 E-value=0.048 Score=63.93 Aligned_cols=108 Identities=9% Similarity=0.001 Sum_probs=65.1
Q ss_pred cEEEEEecCCeEEEEEccCCCceeEecCCCC-cEEE----------EEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeE
Q 001160 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCTM----------MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1134)
Q Consensus 512 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~v~~----------~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1134)
..++.++.++.|.-.|..+++.+..+..... .+.. +++ .+..++.++ .++.+.-.|.++|+.+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t----~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGT----LDARLVALDAKTGKVV 143 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEc----CCCEEEEEECCCCCEE
Confidence 4677777778888888888887776543221 1111 112 123455544 3678999999999988
Q ss_pred EEecCccCc---ceEE-EEEeCCCCEEEEEe------CCCeEEEEECCCCeeEEEEe
Q 001160 581 RTYSGFRKR---SLGV-VQFDTTRNRFLAAG------DEFQIKFWDMDNMNMLTTVD 627 (1134)
Q Consensus 581 ~~~~~~~~~---~v~~-~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~ 627 (1134)
-........ .+.+ -... ++ .++++. .+|.|+.+|.++|+.+-.+.
T Consensus 144 W~~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred eecccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 776532110 1111 1111 33 455543 26899999999999887654
No 351
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=97.87 E-value=1.5e-05 Score=61.74 Aligned_cols=52 Identities=33% Similarity=0.540 Sum_probs=42.2
Q ss_pred HHHHHHHhhcccHHHHHHHhcCcccccccchhhHHHHHHHHHHHHHHHhccCH
Q 001160 38 MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDR 90 (1134)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~lEll~~~~~ 90 (1134)
+..++++|+.|+|+.|++.+...........+ .+.|.|++|+|+||+..++.
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 67899999999999999999887544322222 48999999999999998764
No 352
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.86 E-value=2.1e-05 Score=53.02 Aligned_cols=31 Identities=39% Similarity=0.566 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhhhhcchHHHHHHHHHhcCCC
Q 001160 5 SRELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1134)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~ 35 (1134)
++++.++|+|||...||.+|+++|++|+|+.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 5789999999999999999999999999974
No 353
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.84 E-value=0.007 Score=67.34 Aligned_cols=242 Identities=12% Similarity=0.085 Sum_probs=139.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc----------------------------------------ceeeEE
Q 001160 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL----------------------------------------RQHLEI 449 (1134)
Q Consensus 410 ~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~----------------------------------------~~~~~~ 449 (1134)
.|+.+.|+++...||+|...|.|.||.+...+.. ....-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4889999999999999999999999876432111 112223
Q ss_pred ecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE--ecC------CCCCeEEEEee---ccCCc---cEEE
Q 001160 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT--FEG------HEAPVYSVCPH---HKESI---QFIF 515 (1134)
Q Consensus 450 ~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~--~~~------h~~~v~~i~~~---~~~~~---~~l~ 515 (1134)
+...++|++++.|.-| +++.|..+|.+.|.|++....++. +.. ....|+++.|. ..+|+ -.++
T Consensus 83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 3457899999998666 799999999999999988887765 222 23467788776 33343 5788
Q ss_pred EEecCCeEEEEEccC-CCcee------EecCCCCcEEEEE-ECCC---------------------CCEEEEEeeCCCCC
Q 001160 516 STAIDGKIKAWLYDY-LGSRV------DYDAPGNWCTMMA-YSAD---------------------GTRLFSCGTSKEGE 566 (1134)
Q Consensus 516 s~~~d~~i~~wd~~~-~~~~~------~~~~~~~~v~~~~-~s~~---------------------~~~l~~~~~~~~~~ 566 (1134)
+|...|.+.+|.+.- ..... ....+...|..+. ++.+ ..++++++ +
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-----e 234 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-----E 234 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE------S
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-----c
Confidence 999999999998752 21111 1113444554444 3221 11444544 4
Q ss_pred CcEEEEeCCCCeeEEEecCccCcceEEEEEe-----CCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC--CCCcceEE
Q 001160 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFD-----TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG--LPASPRLR 639 (1134)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~ 639 (1134)
..++++...+.+.......... ....+.+- ..+..|++-..+|.|+++.+..-+.+..+..... ...+....
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~~-~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDPF-LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS-E-EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred cceEEEeCCCCcccceeecccc-ccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 5699999888776655442211 23334442 2456677888999999999999998888876421 12356778
Q ss_pred EccCCCEEEEEeCCCcEEEEEC
Q 001160 640 FNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 640 ~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
++++|..++-.+.. .+.++.+
T Consensus 314 is~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 314 ISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp E-TTS-EEEE-SSS-EEEEEEE
T ss_pred ECCCCCEEEEeCcc-cEEEEEE
Confidence 89999977766544 4444444
No 354
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.82 E-value=0.0018 Score=72.79 Aligned_cols=178 Identities=16% Similarity=0.105 Sum_probs=113.4
Q ss_pred CeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEe---CC-CcEEEEEcCCceEEEEecCcccceEEEEEecCC
Q 001160 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM---ED-SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL 936 (1134)
Q Consensus 861 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~---~d-g~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~ 936 (1134)
..+.+-|.+ +.....+......+..-+|+| +++.++..+ .. ..++++++.+++....+. ..+.-...+|||||
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG 249 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDG 249 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCC
Confidence 445555655 555555555556677888999 777665543 22 359999999886544443 22333467899999
Q ss_pred CEEEEE-cCCCc--EEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECC----eEEEEeCCCcceec
Q 001160 937 NALVSS-GADAQ--LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES----QISVYDSKLECSRS 1009 (1134)
Q Consensus 937 ~~l~s~-~~D~~--i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~----~v~vwd~~~~~~~~ 1009 (1134)
+.|+-+ ..|+. |.+.|+.++... .+....+.. ..-.|+|||++++..+|+ .|.+++.++.....
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~~~---~Lt~~~gi~------~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r 320 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKNLP---RLTNGFGIN------TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR 320 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCcce---ecccCCccc------cCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE
Confidence 887754 45665 555677665521 133333322 367899999999986543 47778887766655
Q ss_pred cCCCCCCCCCeEEEEEccCCCEEEEEecC-Cc--EEEEeCCCcceee
Q 001160 1010 WSPKDALPAPISSAIYSCDGLLVYAGFCD-GA--IGVFDAETLRFRC 1053 (1134)
Q Consensus 1010 ~~~~~~h~~~v~~v~~s~dg~~l~~~~~d-g~--I~vwd~~~~~~~~ 1053 (1134)
+....+ .-..-.+||||++++..+.. |. |.+.|+.++....
T Consensus 321 iT~~~~---~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~ 364 (425)
T COG0823 321 LTFSGG---GNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIR 364 (425)
T ss_pred eeccCC---CCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEE
Confidence 544321 12277899999998877753 44 7777777766433
No 355
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.79 E-value=0.0058 Score=68.93 Aligned_cols=222 Identities=11% Similarity=0.074 Sum_probs=118.9
Q ss_pred cCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001160 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1134)
Q Consensus 406 ~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~ 485 (1134)
........+.++|+|++++++ .+|.-.|+..... +. ...+.-...+|.+.++ +|+-...++|.|+.--
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYKNF 97 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEETT
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEEcC
Confidence 344557899999999999994 6777777773332 21 1223456788988664 6666668899997422
Q ss_pred CCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCC
Q 001160 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1134)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1134)
+.+....++. ...+..+-. |.+|...+.+ .|.+||+.+.+.+..+... .|..+.|+++|++++..+
T Consensus 98 ~~~~~k~i~~-~~~~~~If~-----G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t----- 163 (443)
T PF04053_consen 98 KNEVVKSIKL-PFSVEKIFG-----GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT----- 163 (443)
T ss_dssp EE-TT------SS-EEEEE------SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE------
T ss_pred ccccceEEcC-CcccceEEc-----CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe-----
Confidence 3333233332 223444432 3566655544 8999999998888877654 489999999999999886
Q ss_pred CCcEEEEeCCCC-----------eeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCe--eEEEEeCCCCC
Q 001160 566 ESHLVEWNESEG-----------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--MLTTVDADGGL 632 (1134)
Q Consensus 566 ~~~i~~wd~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~ 632 (1134)
+..+.+++.... .....+.... ..|.+.+|..+ .++-.... .++.+ -.|+ .+..++
T Consensus 164 ~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~-~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~~~i~~ld----- 232 (443)
T PF04053_consen 164 KDSIYILKYNLEAVAAIPEEGVEDAFELIHEIS-ERIKSGCWVED--CFIYTTSN-HLKYL--VNGETGIIAHLD----- 232 (443)
T ss_dssp S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT--EEEEE-TT-EEEEE--ETTEEEEEEE-S-----
T ss_pred CCeEEEEEecchhcccccccCchhceEEEEEec-ceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCcceEEEcC-----
Confidence 345777765433 0122222112 26788888866 44433333 66663 3333 333332
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 633 ~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.+++-+.+.++.+.+.....++.+..+.+...
T Consensus 233 ~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 233 KPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp S--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred CceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 25677788887788999999999999988654
No 356
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.78 E-value=0.012 Score=60.54 Aligned_cols=191 Identities=10% Similarity=0.113 Sum_probs=110.0
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
...+.+++|.|++..|+|+....+.|...+.. |+.+.+.. +.+ .+..-.|++..++.++++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl~ 81 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVLS 81 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEEE
Confidence 34699999999988899999888899888864 66554321 222 346778899888888887
Q ss_pred EeCCCeEEEEEcCCCCc-c--ceee--EEe---cccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC---CeeeEE--
Q 001160 426 AFSKHIVHLYTYNPTGE-L--RQHL--EID---AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---GRKQYT-- 492 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~-~--~~~~--~~~---~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~---~~~~~~-- 492 (1134)
.-.++.+.+.++..... + .... .+. .+...+..++|.+.++. |+.+-+.....++.+.. +..+..
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeecc
Confidence 76799999999854322 1 1111 111 24567899999999885 44445555555555442 221111
Q ss_pred e------cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCC---------CcEEEEEECCCCCEEE
Q 001160 493 F------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------NWCTMMAYSADGTRLF 557 (1134)
Q Consensus 493 ~------~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~ 557 (1134)
. ......+.+++++|.. +.+++.......|..+| ..++.+..+.... ...-.++|.++|+..+
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~t-~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPRT-GHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTT-TEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred ccccccccceeccccceEEcCCC-CeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 1 1234567888998874 47888888889999998 4455444333332 2578999999997776
Q ss_pred EE
Q 001160 558 SC 559 (1134)
Q Consensus 558 ~~ 559 (1134)
+.
T Consensus 238 vs 239 (248)
T PF06977_consen 238 VS 239 (248)
T ss_dssp EE
T ss_pred Ec
Confidence 65
No 357
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.76 E-value=0.0091 Score=66.45 Aligned_cols=253 Identities=15% Similarity=0.194 Sum_probs=133.3
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccc------cc------------cceeecccccc------ccccccc
Q 001160 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA------HK------------PFKVWDISAAS------MPLQNAL 403 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~------~~------------~~~~~~~~~~~------~~~~~~~ 403 (1134)
.|+.+.|+++... |++|...|.|.||.+...+.-. .. .-.+-|+.... ...+..+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 6899999999763 6789999999999886553321 00 11122222111 1233445
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEec------ccCCeeEEEEec---CCC---cEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDA------HVGGVNDIAFAH---PNK---QLCIV 471 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~------h~~~v~~l~~s~---d~~---~~~l~ 471 (1134)
+....++|++++.| |=-++|+|..+|.+.|.|+++...+... .+.. ....|+++.|+- .++ .+.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 66678999999998 5559999999999999999876654321 1222 234688888872 222 25788
Q ss_pred EEcCCCcEEEEECC-C--Ceee----EEecCCCCCeEEEEeeccCCc-------------------cEEEEEecCCeEEE
Q 001160 472 TCGDDKMIKVWDVV-A--GRKQ----YTFEGHEAPVYSVCPHHKESI-------------------QFIFSTAIDGKIKA 525 (1134)
Q Consensus 472 sg~~d~~i~iwd~~-~--~~~~----~~~~~h~~~v~~i~~~~~~~~-------------------~~l~s~~~d~~i~~ 525 (1134)
.|...|.+.+|.+. . +... .....+.++|..+..-....| .-++....+..+|+
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 89999999999775 1 2211 122246677777653311110 23455556888999
Q ss_pred EEccCCCceeEecCCCCcEEEEEEC-----CCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccC---cceEEEEEe
Q 001160 526 WLYDYLGSRVDYDAPGNWCTMMAYS-----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK---RSLGVVQFD 597 (1134)
Q Consensus 526 wd~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---~~v~~~~~~ 597 (1134)
+...+.+..............+.+- ..+..|++-. .+|.++++.+..-+.+..+..... ..+...+++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~----~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF----NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE----TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE----CCCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9888766655444222233444453 2344455444 488899999999888877665321 123345667
Q ss_pred CCCCEEEEEe
Q 001160 598 TTRNRFLAAG 607 (1134)
Q Consensus 598 ~~~~~l~~~~ 607 (1134)
++|..++-.+
T Consensus 316 ~~Gdi~~~~g 325 (395)
T PF08596_consen 316 RNGDIFYWTG 325 (395)
T ss_dssp TTS-EEEE-S
T ss_pred CCCCEEEEeC
Confidence 7776554443
No 358
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.68 E-value=0.02 Score=64.77 Aligned_cols=200 Identities=12% Similarity=0.122 Sum_probs=110.6
Q ss_pred EEEeccCCCEEEEEeCC------------eEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcC
Q 001160 845 CIALSKNDSYVMSASGG------------KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR 912 (1134)
Q Consensus 845 ~~~~s~dg~~la~~sdg------------~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~ 912 (1134)
.++.+|.|..+|...|. .|.||+.. |+.+..+.-..+.|.++.|+. +.. |++...||.+++||+.
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e~-LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DEE-LVVVQSDGTVRVYDLF 109 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CCe-EEEEEcCCEEEEEeCC
Confidence 35666777777766543 59999985 566666544448999999997 544 4557799999999986
Q ss_pred Cce------EEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccc-cceeeecCCCCCC---CCcCceE-EE
Q 001160 913 VDE------VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL-KSRFIQAPAGRQS---PLVGETK-VQ 981 (1134)
Q Consensus 913 ~~~------~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~-~~~~~~~~~~~~~---~~~~v~~-~~ 981 (1134)
... .+....-....+....+..+|-.+.+ .++.+.+- ...+.. ....+....+... ....... ..
T Consensus 110 G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~ 185 (410)
T PF04841_consen 110 GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPL 185 (410)
T ss_pred CceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEE--eCccccchhhccccCCCcccccccccccccceE
Confidence 333 11111112222333344445533333 33333332 222210 1011111111000 0001111 33
Q ss_pred ECCCCcEEEE-EECCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCc
Q 001160 982 FHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1058 (1134)
Q Consensus 982 fspdg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 1058 (1134)
++.++...+. ..++.+.+.+. ..+. +. ..+++..|++||+|++||.-..+|.+.|.+.+-.+.++++...
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~----~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~ 257 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFKQ---ID----SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD 257 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccccc---cc----CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC
Confidence 5555554444 44556664443 2111 11 1468999999999999999999999999988777777666543
No 359
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.65 E-value=0.0066 Score=60.68 Aligned_cols=233 Identities=15% Similarity=0.120 Sum_probs=138.4
Q ss_pred EEEeccCCC-EEEEEe-CCe-EEEEECCCCeEEEEecCCCCc--eEEEEEcCCCCcEEEEEeCC-----CcEEEEEcCCc
Q 001160 845 CIALSKNDS-YVMSAS-GGK-VSLFNMMTFKVMTMFMSPPPA--ATFLAFHPQDNNIIAIGMED-----SSVQIYNVRVD 914 (1134)
Q Consensus 845 ~~~~s~dg~-~la~~s-dg~-i~vwd~~~~~~~~~~~~~~~~--i~~l~~s~~~~~~lasg~~d-----g~i~iwd~~~~ 914 (1134)
.++|+|-.. -++.+- -|+ ..++|..+.+...++....+. --.=.||| ||.+|...-.| |.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccc
Confidence 577888544 455555 454 788999888776665433322 12246999 89998765444 78999998854
Q ss_pred -eEEEEecCcccceEEEEEecCCCEEEEEcC------C------------CcEEEEeCCCcccccceeeecCCCCCCCCc
Q 001160 915 -EVKTKLKGHQNRITGLAFSPTLNALVSSGA------D------------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 975 (1134)
Q Consensus 915 -~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~------D------------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~ 975 (1134)
+.+..+..|.-.--.+.+.+||+.|+.+.. | -++.+.|..+|+.+....+.....+ .
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~----l 226 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ----L 226 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh----c
Confidence 556778888877788999999999987643 1 2344555555554443332211111 4
Q ss_pred CceEEEECCCCcEEEEEE-CC--e-----EEEEeCCCcceeccCCCC----CCCCCeEEEEEccCCCEEEEEe-cCCcEE
Q 001160 976 GETKVQFHNDQTHLLVVH-ES--Q-----ISVYDSKLECSRSWSPKD----ALPAPISSAIYSCDGLLVYAGF-CDGAIG 1042 (1134)
Q Consensus 976 ~v~~~~fspdg~~l~~~~-d~--~-----v~vwd~~~~~~~~~~~~~----~h~~~v~~v~~s~dg~~l~~~~-~dg~I~ 1042 (1134)
.+..++..+||+.++.+. .| . |-.+. .++.+..+.... ....-|-+|+...+..+++..+ .-++..
T Consensus 227 SiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~-~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v 305 (366)
T COG3490 227 SIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFR-KGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV 305 (366)
T ss_pred ceeeeeeCCCCcEEEEEEeeCCCccCCcceeecc-CCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence 578888889988777642 11 0 11111 222221111110 0134577888876666655544 445678
Q ss_pred EEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEe
Q 001160 1043 VFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1098 (1134)
Q Consensus 1043 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~ 1098 (1134)
+||..+|..+....... .. .++. ...-++..+.+|.++++.
T Consensus 306 i~da~tG~vv~~a~l~d----------aa--Gva~---~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 306 IWDAATGAVVSEAALPD----------AA--GVAA---AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEEcCCCcEEecccccc----------cc--ccee---ccCceEEecCCceEEecc
Confidence 89999999886554221 11 1222 223444555678888774
No 360
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.64 E-value=0.012 Score=60.46 Aligned_cols=202 Identities=12% Similarity=0.099 Sum_probs=111.8
Q ss_pred CCceEEEEeccCCCEEEEEe--CCeEEEEECCCCeEEEEecCC-CCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce-
Q 001160 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP-PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE- 915 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~- 915 (1134)
...++.++|.|+...|++.. .+.|..++.+ |+.++.+.-. .+..-.+++.. ++.++++--.++.+.++++....
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----T
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEecccc
Confidence 45699999999877555554 5788888874 7777776533 35678899987 77777766568999999984321
Q ss_pred -----EEEEe----c-CcccceEEEEEecCCCEEEEEcCCCcEEEEeCCC---cccccceeeecCCCCCCCCcCceEEEE
Q 001160 916 -----VKTKL----K-GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAGRQSPLVGETKVQF 982 (1134)
Q Consensus 916 -----~~~~l----~-~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~f 982 (1134)
....+ . .+...+-.|+|.|.++.|+.+-...-..++.+.. .....................+..+++
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY 178 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEE
Confidence 11122 1 2445689999999888887777776677777654 111111111111101111145788999
Q ss_pred CCCCcEEEE-E-ECCeEEEEeCCCcceeccCCCCCC------CCCeEEEEEccCCCEEEEEecCCcEEEE
Q 001160 983 HNDQTHLLV-V-HESQISVYDSKLECSRSWSPKDAL------PAPISSAIYSCDGLLVYAGFCDGAIGVF 1044 (1134)
Q Consensus 983 spdg~~l~~-~-~d~~v~vwd~~~~~~~~~~~~~~h------~~~v~~v~~s~dg~~l~~~~~dg~I~vw 1044 (1134)
+|....|.+ + ..+.|..+|.+++.+..+.-..+. -..--.|+|.++|++.+ .++-+..++|
T Consensus 179 ~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 179 DPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp ETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred cCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 998766555 4 457788888877765544333211 23577899999997544 4566655554
No 361
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.62 E-value=2.2e-05 Score=86.10 Aligned_cols=203 Identities=15% Similarity=0.212 Sum_probs=130.7
Q ss_pred CCeeEEEEecCCC-eEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC-CCCEEE
Q 001160 347 SNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLG 424 (1134)
Q Consensus 347 ~~V~~v~~spdg~-~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp-dg~~la 424 (1134)
..+.|++++-+.+ -++++|..+|.|.+-.+....-- . .....+|....++++|++ |...||
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS------s-----------~E~tp~~ar~Ct~lAwneLDtn~LA 119 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS------S-----------AEVTPGYARPCTSLAWNELDTNHLA 119 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc------c-----------ceecccccccccccccccccHHHHH
Confidence 3566776655443 58899999999999887654321 0 112467888999999999 677888
Q ss_pred EEe----CCCeEEEEEcCCCCcc-ceeeEEec-ccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe-eeEEecCCC
Q 001160 425 VAF----SKHIVHLYTYNPTGEL-RQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGHE 497 (1134)
Q Consensus 425 s~~----~dg~i~iwd~~~~~~~-~~~~~~~~-h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~h~ 497 (1134)
+|- .|..+.|||+.++-.. .....+.+ -.....+++|..+.+ ++.+|...+.++++|++... ....+ .+
T Consensus 120 agldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv--nT 195 (783)
T KOG1008|consen 120 AGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV--NT 195 (783)
T ss_pred hhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--hh
Confidence 873 4678999999886211 11112222 344566889988877 78899999999999987322 11122 22
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEE-ccCCCceeEecCC-----CCcEEEEEECCCCCE-EEEEeeCCCCCCcEE
Q 001160 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWL-YDYLGSRVDYDAP-----GNWCTMMAYSADGTR-LFSCGTSKEGESHLV 570 (1134)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd-~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~-l~~~~~~~~~~~~i~ 570 (1134)
..+..+.+.|-. +.++++-. ||.|.+|| ..+.+.......+ ...+..++|.|...- +++... ..++|+
T Consensus 196 k~vqG~tVdp~~-~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tIr 270 (783)
T KOG1008|consen 196 KYVQGITVDPFS-PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITIR 270 (783)
T ss_pred hhcccceecCCC-CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceEE
Confidence 345556665532 25776655 99999999 4443333222111 225889999996544 444443 367899
Q ss_pred EEeCC
Q 001160 571 EWNES 575 (1134)
Q Consensus 571 ~wd~~ 575 (1134)
++|+.
T Consensus 271 lydi~ 275 (783)
T KOG1008|consen 271 LYDIC 275 (783)
T ss_pred Eeccc
Confidence 99875
No 362
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.11 Score=58.53 Aligned_cols=263 Identities=13% Similarity=0.133 Sum_probs=167.2
Q ss_pred eEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEc
Q 001160 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 338 ~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
.....+.-......+.+.|+|..+.++-.....+.+-+......... ...-...-..++.+
T Consensus 22 ~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~-------------------~~~g~~~p~~i~v~ 82 (381)
T COG3391 22 KVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQS-------------------LSVGGVYPAGVAVN 82 (381)
T ss_pred EEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeee-------------------ccCCCccccceeeC
Confidence 33334443346778889999965555544333444444331111100 00111345578899
Q ss_pred CCCCEEEE-EeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEc-CCCcEEEEECCCCeeeEEecC
Q 001160 418 PDGLMLGV-AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGRKQYTFEG 495 (1134)
Q Consensus 418 pdg~~las-~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~-~d~~i~iwd~~~~~~~~~~~~ 495 (1134)
+++..+.. ...++.|.+.|..+........ .+. .-..++++++++.++++-.. .++++.+.|..+++.+.+...
T Consensus 83 ~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~--vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v 158 (381)
T COG3391 83 PAGNKVYVTTGDSNTVSVIDTATNTVLGSIP--VGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV 158 (381)
T ss_pred CCCCeEEEecCCCCeEEEEcCcccceeeEee--ecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec
Confidence 98885554 4456889999977655443211 122 56789999999864444333 478999999999988887654
Q ss_pred CCCCeEEEEeeccCCccEE-EEEecCCeEEEEEccCCCcee-E---ecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEE
Q 001160 496 HEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSRV-D---YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1134)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1134)
-..+ ..+++.|++ ..+ ++-..++.|.+.|........ . ..........+.++|+|+++...... +.++.+.
T Consensus 159 G~~P-~~~a~~p~g--~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~-~~~~~v~ 234 (381)
T COG3391 159 GNTP-TGVAVDPDG--NKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG-SGSNNVL 234 (381)
T ss_pred CCCc-ceEEECCCC--CeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc-CCCceEE
Confidence 4445 778887765 544 444588999999966544332 0 11222344678999999987766531 1246899
Q ss_pred EEeCCCCeeEEE-ecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeC
Q 001160 571 EWNESEGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDA 628 (1134)
Q Consensus 571 ~wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 628 (1134)
..|..++..... +..... ....+..+|+|..+++.. ..+.+.+-|..+.........
T Consensus 235 ~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 235 KIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred EEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 999988877665 333332 345588999999988874 458899999988887776653
No 363
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.56 E-value=0.00013 Score=80.17 Aligned_cols=199 Identities=14% Similarity=0.183 Sum_probs=132.2
Q ss_pred CCceEEEEeccCCC--EEEEEe-CCeEEEEECCCCeE--EEEecCCCCceEEEEEcCCCCcEEEEEe----CCCcEEEEE
Q 001160 840 EESAACIALSKNDS--YVMSAS-GGKVSLFNMMTFKV--MTMFMSPPPAATFLAFHPQDNNIIAIGM----EDSSVQIYN 910 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~--~la~~s-dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~~lasg~----~dg~i~iwd 910 (1134)
...+.|++...+.. .+++|. +|.|.+-......- ....+++...+++++|.+-|.++||+|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 44567777666544 566776 89998887764322 2345567788999999997888898774 456799999
Q ss_pred cCCc--eEE--EEecC-cccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECC-
Q 001160 911 VRVD--EVK--TKLKG-HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN- 984 (1134)
Q Consensus 911 ~~~~--~~~--~~l~~-h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp- 984 (1134)
+.++ .+. ..+.+ -.....+++|-.|.+++.+|.....+.++|+...-.....+ .. ..+..+...|
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv-nT--------k~vqG~tVdp~ 206 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV-NT--------KYVQGITVDPF 206 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh-hh--------hhcccceecCC
Confidence 9876 111 12222 33445688998899999999888899999987422111111 10 2356788888
Q ss_pred CCcEEEEEECCeEEEEeC--CCcceec--cCCCCCCCCCeEEEEEccCCC-EEEEEecC-CcEEEEeCC
Q 001160 985 DQTHLLVVHESQISVYDS--KLECSRS--WSPKDALPAPISSAIYSCDGL-LVYAGFCD-GAIGVFDAE 1047 (1134)
Q Consensus 985 dg~~l~~~~d~~v~vwd~--~~~~~~~--~~~~~~h~~~v~~v~~s~dg~-~l~~~~~d-g~I~vwd~~ 1047 (1134)
.+.+++...|+.|.+||. +.+.... ..........+..++|+|-.. .|++...| ++|+.+|+.
T Consensus 207 ~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 207 SPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 888999988999999994 3222211 111111134589999998533 45555554 779999875
No 364
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.027 Score=63.40 Aligned_cols=207 Identities=14% Similarity=0.155 Sum_probs=141.5
Q ss_pred eEEEEeccCCCEEEEEe--CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeC---CCcEEEEEcCCceEE
Q 001160 843 AACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME---DSSVQIYNVRVDEVK 917 (1134)
Q Consensus 843 i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~---dg~i~iwd~~~~~~~ 917 (1134)
...+++++++..+.... ++.|.+.|..+.+......--. ....++++| +++.+.++.. ++++.+.|..+++.+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 45688999988666554 6899999988777766654222 667899999 6655555544 689999999999888
Q ss_pred EEecCcccceEEEEEecCCCEEEEE-cCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEE--C
Q 001160 918 TKLKGHQNRITGLAFSPTLNALVSS-GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH--E 994 (1134)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~-~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~--d 994 (1134)
.....-..+ ..++++|+|..+..+ ..++.|.+.|.++..... ...............++++|||.++.+.. +
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~----~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR----GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec----cccccccccCCCCceEEECCCCCEEEEEeccC
Confidence 775543344 899999999955544 478899999977755321 01000111113457899999999877743 2
Q ss_pred --CeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecC-CcEEEEeCCCcceeeecCC
Q 001160 995 --SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-GAIGVFDAETLRFRCRIGP 1057 (1134)
Q Consensus 995 --~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~d-g~I~vwd~~~~~~~~~~~~ 1057 (1134)
+.+...|.............+-. ....+.++|+|+++.+.... +.+.+-|..+......+..
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred CCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 47888888444333331111112 45678999999998877444 8899999998877766553
No 365
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.51 E-value=0.04 Score=59.31 Aligned_cols=234 Identities=13% Similarity=0.123 Sum_probs=134.7
Q ss_pred cCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCC
Q 001160 782 NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGG 861 (1134)
Q Consensus 782 ~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg 861 (1134)
..++.|+.|+.+| +.++++... ..... .. + ...|..+...++-+.+++-+|+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~-------------------~~~~~----i~---~-~~~I~ql~vl~~~~~llvLsd~ 56 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDP-------------------SKPTR----IL---K-LSSITQLSVLPELNLLLVLSDG 56 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCC-------------------cccee----Ee---e-cceEEEEEEecccCEEEEEcCC
Confidence 3567788888888 777775100 00000 11 2 4459999999999999888899
Q ss_pred eEEEEECCCCeEEEEe--------------cCCCCceEEEE--EcCCCCcEEEEEeCCCcEEEEEcCCc-----eEEEEe
Q 001160 862 KVSLFNMMTFKVMTMF--------------MSPPPAATFLA--FHPQDNNIIAIGMEDSSVQIYNVRVD-----EVKTKL 920 (1134)
Q Consensus 862 ~i~vwd~~~~~~~~~~--------------~~~~~~i~~l~--~s~~~~~~lasg~~dg~i~iwd~~~~-----~~~~~l 920 (1134)
.+.++++......... ......+...+ -...+..+|+++ ...+|.+|..... +..+.+
T Consensus 57 ~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~ 135 (275)
T PF00780_consen 57 QLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEI 135 (275)
T ss_pred ccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEE
Confidence 9999999865443311 11223344444 112244555555 4458888887653 345555
Q ss_pred cCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCC------CCCcCceEEEECCCCcEEEEEEC
Q 001160 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ------SPLVGETKVQFHNDQTHLLVVHE 994 (1134)
Q Consensus 921 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~fspdg~~l~~~~d 994 (1134)
. -.+.+.+++|. ++.++.+..++ ..+.|+.++..... . ...... ........+.--+++.+|++ .+
T Consensus 136 ~-lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~-~~ 207 (275)
T PF00780_consen 136 S-LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSEL--L-DPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLC-YD 207 (275)
T ss_pred E-cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEE--e-CccCCcchhhhcccCCCceEEEEeCCceEEEE-ec
Confidence 5 34678899998 55666666554 88899997664221 1 111100 00011223333344555554 44
Q ss_pred CeEEEEeCCCccee-ccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCc
Q 001160 995 SQISVYDSKLECSR-SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1058 (1134)
Q Consensus 995 ~~v~vwd~~~~~~~-~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 1058 (1134)
..-...|..|...+ ....- .....++++ ...||++.+. +.|.||++.+|+++..+...
T Consensus 208 ~~g~fv~~~G~~~r~~~i~W---~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 208 NIGVFVNKNGEPSRKSTIQW---SSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred ceEEEEcCCCCcCcccEEEc---CCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 44455565554333 11111 335566666 3347776654 56999999999998887643
No 366
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.47 E-value=0.32 Score=57.09 Aligned_cols=192 Identities=11% Similarity=0.081 Sum_probs=117.1
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCC-CCeEE----------EEeeccCCccEEEEEecCCeEEEEEccCCCceeEe
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHE-APVYS----------VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~----------i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 537 (1134)
.++.++.++.|+-.|..+|+.+.++.... ..+.. +++ .+..++.++.|+.+.-.|..+++.....
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av----~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL----YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE----ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 46667778899999999999887664311 11111 122 1256778889999999999998887765
Q ss_pred cCCCCc-EEEEEECC---CCCEEEEEeeC--CCCCCcEEEEeCCCCeeEEEecCccCc----------------------
Q 001160 538 DAPGNW-CTMMAYSA---DGTRLFSCGTS--KEGESHLVEWNESEGAIKRTYSGFRKR---------------------- 589 (1134)
Q Consensus 538 ~~~~~~-v~~~~~s~---~~~~l~~~~~~--~~~~~~i~~wd~~~~~~~~~~~~~~~~---------------------- 589 (1134)
...... -..+.-+| ++ .++.+... ...++.|..+|.++|+.+-.+..-...
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 432111 01111112 34 44443321 112578999999999987665432110
Q ss_pred --------c-eEEEEEeCCCCEEEEEeCC-----C-----------eEEEEECCCCeeEEEEeCCCCC-------CCcce
Q 001160 590 --------S-LGVVQFDTTRNRFLAAGDE-----F-----------QIKFWDMDNMNMLTTVDADGGL-------PASPR 637 (1134)
Q Consensus 590 --------~-v~~~~~~~~~~~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~-------~~v~~ 637 (1134)
. -..+++.+....++.+..+ + .|.-.|+++|+..-.++...+. ....-
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l 305 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL 305 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence 1 1134667766677665411 2 6777889999988777643221 11112
Q ss_pred EEEccCCC---EEEEEeCCCcEEEEECCCch
Q 001160 638 LRFNKEGS---LLAVTTSDNGIKILANSDGV 665 (1134)
Q Consensus 638 ~~~s~d~~---~l~~~~~dg~i~iw~~~~~~ 665 (1134)
+.+..+|+ .++.+..+|.+.++|-.+|+
T Consensus 306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 306 FDLKKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred EEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 22334676 78889999999999999993
No 367
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.47 E-value=0.096 Score=60.31 Aligned_cols=243 Identities=12% Similarity=0.125 Sum_probs=128.2
Q ss_pred CeEEEEEcCCCCEEEEE-eCC----CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEc-C--------
Q 001160 410 SVNRCVWGPDGLMLGVA-FSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-D-------- 475 (1134)
Q Consensus 410 ~V~~i~~spdg~~las~-~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~-~-------- 475 (1134)
.+...++||||+++|.+ +.. ..+++.|+.+++.+.. .+... ....+.|.+|++. ++.+.. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 45578899999999976 333 3699999999865542 11111 1223999999985 334332 2
Q ss_pred -CCcEEEEECCCCeee--EEecCCCCC--eEEEEeeccCCccEEEEEec-C---CeEEEEEccCC----CceeEe-cCCC
Q 001160 476 -DKMIKVWDVVAGRKQ--YTFEGHEAP--VYSVCPHHKESIQFIFSTAI-D---GKIKAWLYDYL----GSRVDY-DAPG 541 (1134)
Q Consensus 476 -d~~i~iwd~~~~~~~--~~~~~h~~~--v~~i~~~~~~~~~~l~s~~~-d---~~i~~wd~~~~----~~~~~~-~~~~ 541 (1134)
...|+.|.+.++..- ..+...... ...+..+ .++++++..+. . ..+.+.|+... .....+ ....
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s--~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRS--KDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE---TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEec--CcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 334888998876532 344444443 3455554 45577665432 2 34677777764 122233 3233
Q ss_pred CcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee---EEEecCccC-cceEEEEEeCCCCEEEEE-eCC--CeEEE
Q 001160 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRK-RSLGVVQFDTTRNRFLAA-GDE--FQIKF 614 (1134)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~d--g~i~i 614 (1134)
+....+... +..++..+......+.|...++.+... ...+..+.. ..+..+.. .+++|+.. ..+ ..|++
T Consensus 278 ~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v 353 (414)
T PF02897_consen 278 GVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRV 353 (414)
T ss_dssp S-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEE
T ss_pred ceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEE
Confidence 333333333 443333332333467788888876652 223333333 13444443 45555553 333 35888
Q ss_pred EECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC----CCcEEEEECCCc
Q 001160 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS----DNGIKILANSDG 664 (1134)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~----dg~i~iw~~~~~ 664 (1134)
+++..+.....+..... ..|..+...+++..+..... -+++..||+.++
T Consensus 354 ~~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 354 YDLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp EETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred EECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 99984555555554432 24555555555554433222 357888888877
No 368
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.43 E-value=0.023 Score=66.92 Aligned_cols=151 Identities=14% Similarity=0.038 Sum_probs=88.4
Q ss_pred CCceEEEEEcCCCCcEEEEEe------CCC--cEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCC-CcEEEE
Q 001160 881 PPAATFLAFHPQDNNIIAIGM------EDS--SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD-AQLCMW 951 (1134)
Q Consensus 881 ~~~i~~l~~s~~~~~~lasg~------~dg--~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D-~~i~iW 951 (1134)
...+...++|| +|+.+|... .|. .|.+++. .+.......+. ..+.-.|+|||+.|++.... ..+++.
T Consensus 349 ~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 349 MGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred ccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEe
Confidence 34678999999 777776655 244 4555554 23332223332 47889999999888877533 222222
Q ss_pred -----------eCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeC---CCcceeccC---CCC
Q 001160 952 -----------SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS---KLECSRSWS---PKD 1014 (1134)
Q Consensus 952 -----------d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~---~~~~~~~~~---~~~ 1014 (1134)
+++.++... .....|..+.|||||++++...+++|.+--+ .+.....-. ...
T Consensus 425 ~~~~~gql~~~~vd~ge~~~-----------~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~ 493 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS-----------RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGP 493 (591)
T ss_pred ccCCCceEEEEeccCchhhh-----------ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeec
Confidence 333322110 0114689999999999999976788877333 222222100 111
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001160 1015 ALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047 (1134)
Q Consensus 1015 ~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~ 1047 (1134)
+....+.++.|..++.++ ++..++...+|.+.
T Consensus 494 ~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 494 GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred ccCCccccceEecCCEEE-EEecCCCCceEEEe
Confidence 223446889999999955 55555555555543
No 369
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.39 E-value=0.023 Score=57.03 Aligned_cols=247 Identities=15% Similarity=0.139 Sum_probs=134.7
Q ss_pred EEEEEeCCCCE-EEEEeCCCe-EEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC-----CCcEEEEECCCc
Q 001160 592 GVVQFDTTRNR-FLAAGDEFQ-IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS-----DNGIKILANSDG 664 (1134)
Q Consensus 592 ~~~~~~~~~~~-l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~-----dg~i~iw~~~~~ 664 (1134)
..++|+|.-.. ++.+-.-|+ ..++|....+...++....+....-.-.|||||.+|+..-. .|.|-|||...+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 34778886644 444544444 67899998887777754443323344579999999987543 478999999876
Q ss_pred hhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCccccccccccccccc
Q 001160 665 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV 744 (1134)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1134)
.+.+.++..|-.. ..+..+.+|++.++....
T Consensus 151 fqrvgE~~t~GiG-------------------------------------------------pHev~lm~DGrtlvvanG 181 (366)
T COG3490 151 FQRVGEFSTHGIG-------------------------------------------------PHEVTLMADGRTLVVANG 181 (366)
T ss_pred cceecccccCCcC-------------------------------------------------cceeEEecCCcEEEEeCC
Confidence 5545444444221 112233344444333221
Q ss_pred -------------------CccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeeccccc
Q 001160 745 -------------------DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTE 805 (1134)
Q Consensus 745 -------------------~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~ 805 (1134)
-.+.+.|..+ ...+....+|...+...|..++..+||+.++.+--.|.- ..
T Consensus 182 GIethpdfgR~~lNldsMePSlvlld~at---G~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~-------~d 251 (366)
T COG3490 182 GIETHPDFGRTELNLDSMEPSLVLLDAAT---GNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPR-------ND 251 (366)
T ss_pred ceecccccCccccchhhcCccEEEEeccc---cchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCC-------cc
Confidence 1122222111 223334456655577788889998888855544332210 01
Q ss_pred CC-CCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe--CCeEEEEECCCCeEEEEecCCCC
Q 001160 806 RN-PSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPP 882 (1134)
Q Consensus 806 ~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~ 882 (1134)
.. ..+.......+...+....+... - ...|-+++.+.+..+++..+ .+...+||..++..+..-.- .
T Consensus 252 ~ppLvg~~~~g~~l~~~~~pee~~~~-------~-anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l--~ 321 (366)
T COG3490 252 LPPLVGHFRKGEPLEFLDLPEEQTAA-------F-ANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL--P 321 (366)
T ss_pred CCcceeeccCCCcCcccCCCHHHHHH-------H-HhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc--c
Confidence 00 11111111112222222222111 1 45677899988888888777 56799999999988755331 1
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 001160 883 AATFLAFHPQDNNIIAIGMEDSSVQIYN 910 (1134)
Q Consensus 883 ~i~~l~~s~~~~~~lasg~~dg~i~iwd 910 (1134)
.+..++-.. + =+++.+.+|.+.++.
T Consensus 322 daaGva~~~--~-gf~vssg~G~~~~~s 346 (366)
T COG3490 322 DAAGVAAAK--G-GFAVSSGQGRIIFYS 346 (366)
T ss_pred ccccceecc--C-ceEEecCCceEEecc
Confidence 223333322 2 344466778888774
No 370
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.34 E-value=0.047 Score=58.45 Aligned_cols=217 Identities=17% Similarity=0.161 Sum_probs=121.0
Q ss_pred EeccCCCEEEEEe--CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEec---
Q 001160 847 ALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK--- 921 (1134)
Q Consensus 847 ~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~--- 921 (1134)
.|.++...|.-.. .+.|.-|+..+++. ..+..+. .+.++..-. .+..|++. +.-+++++.+++..+..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~-~~~~~~~~d-~~g~Lv~~--~~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPG-GFSSGALID-AGGRLIAC--EHGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCC-Ccccceeec-CCCeEEEE--ccccEEEeccCCceeEEecccc
Confidence 4667777666555 68899999876643 3333222 334443333 33344433 3346777776665433221
Q ss_pred -Cc-ccceEEEEEecCCCEEEEEcC-----C----CcEEEEeCC-CcccccceeeecCCCCCCCCcCceEEEECCCCcEE
Q 001160 922 -GH-QNRITGLAFSPTLNALVSSGA-----D----AQLCMWSID-KWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 989 (1134)
Q Consensus 922 -~h-~~~i~~l~~s~d~~~l~s~~~-----D----~~i~iWd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l 989 (1134)
+. ...-..+...|+|.+.++.-. . ..-.+|-+. .+.. .....++. ...+.++||||++.|
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~-----~~l~~~~~---~~~NGla~SpDg~tl 177 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV-----VRLLDDDL---TIPNGLAFSPDGKTL 177 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCE-----EEeecCcE---EecCceEECCCCCEE
Confidence 11 123456778899988776544 1 112455554 2221 11111111 234789999999888
Q ss_pred EEE--ECCeEEEEeCCC---cce--eccCCCCCCCCCeEEEEEccCCCEEEEEecCC-cEEEEeCCCcceeeecCCcccc
Q 001160 990 LVV--HESQISVYDSKL---ECS--RSWSPKDALPAPISSAIYSCDGLLVYAGFCDG-AIGVFDAETLRFRCRIGPSAYI 1061 (1134)
Q Consensus 990 ~~~--~d~~v~vwd~~~---~~~--~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg-~I~vwd~~~~~~~~~~~~~~~~ 1061 (1134)
..+ ..+.|.-|+... ..- ..+.......+..-.++...+|.+-+++-.+| .|.+|+.+ |+++.++....
T Consensus 178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~-- 254 (307)
T COG3386 178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV-- 254 (307)
T ss_pred EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC--
Confidence 875 447777776631 111 11111112245666778888888775555554 89999999 99998887542
Q ss_pred cccccCCCCccEEEeecCCCCCEEEE
Q 001160 1062 PTYAVSNTAHPLVIAPHPSEPNQIAL 1087 (1134)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~~~d~~~l~s 1087 (1134)
..+.+++|--.+.+.|..
T Consensus 255 --------~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 255 --------KRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred --------CCCccceEeCCCcCEEEE
Confidence 345567775433444443
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.33 E-value=0.0093 Score=70.17 Aligned_cols=186 Identities=11% Similarity=0.072 Sum_probs=106.6
Q ss_pred CceEEEEeccCCCEEEEEe-------CC--eEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCC--------
Q 001160 841 ESAACIALSKNDSYVMSAS-------GG--KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED-------- 903 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~s-------dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d-------- 903 (1134)
..+.+.++||||+.+|... |+ .|.+++... .......+ ...+.-.|+| +|..|++..+.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~g--~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLEG--HSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeecC--CCCCCceECC-CCCceEEEecCcceEEEec
Confidence 4578899999999887664 32 466666532 33222332 2478899999 77777666432
Q ss_pred ----CcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEE---EeCCCcccccceeeecCCCCCCCCcC
Q 001160 904 ----SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCM---WSIDKWEKLKSRFIQAPAGRQSPLVG 976 (1134)
Q Consensus 904 ----g~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~i---Wd~~~~~~~~~~~~~~~~~~~~~~~~ 976 (1134)
+.+.+.+++.++... ...+.|..+.|||||..++... ++.|.+ -....|+...........+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 233333444443322 2345799999999999888766 467776 343444311111111111111 23
Q ss_pred ceEEEECCCCcEEEEEECCeEEEEeC--CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 001160 977 ETKVQFHNDQTHLLVVHESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA 1040 (1134)
Q Consensus 977 v~~~~fspdg~~l~~~~d~~v~vwd~--~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~ 1040 (1134)
+..+.|..++.+++...+....+|.+ .+.....+ .......++.+|+-+++ .++....+|.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~--~iyv~~~~g~ 561 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPS--TVYVTDARAV 561 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCc--eEEEEcCCce
Confidence 57899999999765544444445554 55443332 22223567888887763 3555556663
No 372
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0017 Score=68.16 Aligned_cols=113 Identities=10% Similarity=0.140 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc----------HHHHHHHhhcccHHHHHHHhcCcccccccchhhHHHHH
Q 001160 6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN----------MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFE 75 (1134)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~ 75 (1134)
+.+..+|..++...|+.+.+..|-+|+|...+ +.++-+++..|+-.-|++.+..-...-... ...+.|.
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~-~s~LE~~ 195 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK-SSSLEFK 195 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc-cccHHHH
Confidence 34689999999999999999999999998762 678888999999999999887643221111 2248899
Q ss_pred HHHHHHHHHHhccCHH--HHHHHHHhccccccccCHHHHHHHHHhh
Q 001160 76 IRKQKYLEALDRQDRA--KAVEILVKDLKVFSSFNEELFKEITQLL 119 (1134)
Q Consensus 76 i~~~~~lEll~~~~~~--~A~~~l~~~~~~~~~~~~~~~~~l~~l~ 119 (1134)
|..+.|++++..|... +|+...|+.++|+...+..+.+.|-..+
T Consensus 196 Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl 241 (394)
T KOG2817|consen 196 LHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSL 241 (394)
T ss_pred HHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence 9999999999999888 9999999999999766666666655543
No 373
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.26 E-value=0.035 Score=66.26 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=98.4
Q ss_pred CCcEEEEE-eCCCcEEEEEcCCceEEEEecCcccc-eEEEEEec-----CCCEEEEEcCCCcEEEEeCCCcccccceeee
Q 001160 893 DNNIIAIG-MEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSP-----TLNALVSSGADAQLCMWSIDKWEKLKSRFIQ 965 (1134)
Q Consensus 893 ~~~~lasg-~~dg~i~iwd~~~~~~~~~l~~h~~~-i~~l~~s~-----d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~ 965 (1134)
+.++|+.- .....|+-.|+..|+.+..+..|... |..++-.. +......|-.+..+..||..-... .++.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~---k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN---KLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC---ceee
Confidence 44555443 35678999999999999999988764 55554321 122344566677899999875321 0111
Q ss_pred cCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001160 966 APAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045 (1134)
Q Consensus 966 ~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd 1045 (1134)
...........-++++-+.+|...+.+.+|.|++||-.+..-++..+ +...+|.+|..+.||++|++. .+..+.+++
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp--~lG~pI~~iDvt~DGkwilaT-c~tyLlLi~ 645 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALP--GLGDPIIGIDVTADGKWILAT-CKTYLLLID 645 (794)
T ss_pred ccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCC--CCCCCeeEEEecCCCcEEEEe-ecceEEEEE
Confidence 11101111245678888888877777889999999985544444433 447999999999999998755 477888887
Q ss_pred C
Q 001160 1046 A 1046 (1134)
Q Consensus 1046 ~ 1046 (1134)
.
T Consensus 646 t 646 (794)
T PF08553_consen 646 T 646 (794)
T ss_pred E
Confidence 5
No 374
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.19 E-value=0.049 Score=60.06 Aligned_cols=177 Identities=14% Similarity=0.135 Sum_probs=103.4
Q ss_pred cEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCC----CCEEEEEeC---------C-CeEEEE
Q 001160 370 DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----GLMLGVAFS---------K-HIVHLY 435 (1134)
Q Consensus 370 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd----g~~las~~~---------d-g~i~iw 435 (1134)
.|+|.|..+.+.+.+..+. -..+-..+..+.+..+ ..+|++|.. . |.|.++
T Consensus 3 ~i~l~d~~~~~~~~~~~l~---------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~ 67 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELE---------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVF 67 (321)
T ss_dssp EEEEEETTTSSEEEEEEEE---------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEE
T ss_pred EEEEEeCCCCeEEEEEECC---------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEE
Confidence 5777777776655443221 0112222334444443 468887753 2 899999
Q ss_pred EcCCC----CccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe-eeEE-ecCCCCCeEEEEeeccC
Q 001160 436 TYNPT----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYT-FEGHEAPVYSVCPHHKE 509 (1134)
Q Consensus 436 d~~~~----~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~-~~~~-~~~h~~~v~~i~~~~~~ 509 (1134)
++... ..++.... ....++|++++-. .+ .|+.+. .+.|.+|++...+ .... +......+.++... +
T Consensus 68 ~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~---~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~ 139 (321)
T PF03178_consen 68 EISESPENNFKLKLIHS-TEVKGPVTAICSF-NG---RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K 139 (321)
T ss_dssp EECSS-----EEEEEEE-EEESS-EEEEEEE-TT---EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T
T ss_pred EEEcccccceEEEEEEE-EeecCcceEhhhh-CC---EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--c
Confidence 99884 23333222 2357889998876 33 333333 4789999998877 3332 21223356666553 3
Q ss_pred CccEEEEEecCCeEEEEEccCCCc-ee--EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC
Q 001160 510 SIQFIFSTAIDGKIKAWLYDYLGS-RV--DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1134)
Q Consensus 510 ~~~~l~s~~~d~~i~~wd~~~~~~-~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1134)
++++.|...+.+.++.++.... .. .......+++++.|-++++.++.+ |.++.+.++...
T Consensus 140 --~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~----D~~gnl~~l~~~ 202 (321)
T PF03178_consen 140 --NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG----DKDGNLFVLRYN 202 (321)
T ss_dssp --TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE----ETTSEEEEEEE-
T ss_pred --cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE----cCCCeEEEEEEC
Confidence 6899999989888886665333 22 223345578999998777766555 347778887654
No 375
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.17 E-value=0.26 Score=55.88 Aligned_cols=176 Identities=12% Similarity=-0.044 Sum_probs=90.2
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc---ceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001160 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1134)
Q Consensus 409 ~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~---~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~ 485 (1134)
+.|.++.|+.+.. |++...||.+++||+.+.... .......-....+.+..+..+|- .++++ ++.+.+-+-.
T Consensus 81 ~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi--vvLt~--~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI--VVLTG--NNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE--EEECC--CCeEEEEeCc
Confidence 7899999998655 456669999999998743300 00001111112222333333442 33333 3444443321
Q ss_pred CCe-eeEEe---cCCC-----C-CeEE-EEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCC
Q 001160 486 AGR-KQYTF---EGHE-----A-PVYS-VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1134)
Q Consensus 486 ~~~-~~~~~---~~h~-----~-~v~~-i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1134)
... ..+.+ .+.. . .... ..+ ..+....+....++.+.+-+-..... ....+++..+++||+|+
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l--~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~ 229 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL--SSDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGK 229 (410)
T ss_pred cccchhhccccCCCcccccccccccccceEe--ecCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCC
Confidence 211 11111 1100 0 0111 112 22224555555556666443322111 11246899999999999
Q ss_pred EEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCC
Q 001160 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599 (1134)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~ 599 (1134)
+++.... ++.+.+....-.+....+..........+.|..+
T Consensus 230 ~iAl~t~----~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 230 FIALFTD----SGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred EEEEEEC----CCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 9988763 6778888876666666666553334555666654
No 376
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=97.12 E-value=0.0012 Score=60.94 Aligned_cols=82 Identities=17% Similarity=0.281 Sum_probs=67.5
Q ss_pred chhhHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001160 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1134)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1134)
++.. ++|+|+.+.|||++..|+..+|..|+++.-..+...+.+++++|+.+....++.+++....+++ ++.+
T Consensus 25 EL~~-lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s 103 (133)
T cd08044 25 ELSQ-LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDA 103 (133)
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHH
Confidence 4444 9999999999999999999999999998877776668899999999999988888887666654 3455
Q ss_pred HHHHHHHHHh
Q 001160 140 RNIMLVELKK 149 (1134)
Q Consensus 140 r~~l~~~l~~ 149 (1134)
-..|+..|++
T Consensus 104 ~~lL~~~L~~ 113 (133)
T cd08044 104 YSLLLRFLES 113 (133)
T ss_pred HHHHHHHHHH
Confidence 5677777766
No 377
>PRK10115 protease 2; Provisional
Probab=97.03 E-value=1.1 Score=54.57 Aligned_cols=244 Identities=10% Similarity=0.048 Sum_probs=122.4
Q ss_pred CeEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcC-----CCcE
Q 001160 410 SVNRCVWGPDGLMLGVAFS-----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----DKMI 479 (1134)
Q Consensus 410 ~V~~i~~spdg~~las~~~-----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~-----d~~i 479 (1134)
.+..+.|||||++||.+.. ...|++.|+.++..+.. .+.+ . -..++|++|++. ++++... ...|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~-~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWT-FYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCE-EEEEEecCCCCCCCEE
Confidence 4777899999999998743 23688999988764321 1111 1 146999999985 3333222 2478
Q ss_pred EEEECCCC--eeeEEecCCCCCeEEEEeeccCCccEEEEEec---CCeEEEEEccC--CCceeEecCCCCcEEEEEECCC
Q 001160 480 KVWDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDY--LGSRVDYDAPGNWCTMMAYSAD 552 (1134)
Q Consensus 480 ~iwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~---d~~i~~wd~~~--~~~~~~~~~~~~~v~~~~~s~~ 552 (1134)
+.+++.++ +....+........ +......++.+++..+. ++.+.+++... ......+.........+. ..
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 278 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY- 278 (686)
T ss_pred EEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC-
Confidence 88999888 33334443333333 22222334455554433 35688888533 222223333333333332 22
Q ss_pred CCEEEEEeeCCCCCCcEEEEeCC-CCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCC-CeeEEEEeCCC
Q 001160 553 GTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADG 630 (1134)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~ 630 (1134)
+..+...+..+.....|...++. .++....+....+..+..+.+.. +..+++...+|.-+++-+.. +..+..+....
T Consensus 279 ~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~ 357 (686)
T PRK10115 279 QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREVIGIAFDD 357 (686)
T ss_pred CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCceEEecCCC
Confidence 23444333222223445555555 23322223332333677777773 33445555676655554432 22333333111
Q ss_pred CCCCcceEEEc--cCCC-EEEEEeC---CCcEEEEECCCc
Q 001160 631 GLPASPRLRFN--KEGS-LLAVTTS---DNGIKILANSDG 664 (1134)
Q Consensus 631 ~~~~v~~~~~s--~d~~-~l~~~~~---dg~i~iw~~~~~ 664 (1134)
. ..+..+.++ +++. ++++.++ -+.+..+|..++
T Consensus 358 ~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 358 P-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred C-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 1 112223344 3433 4443333 467888887765
No 378
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.03 E-value=0.2 Score=53.84 Aligned_cols=227 Identities=10% Similarity=0.072 Sum_probs=125.4
Q ss_pred ccCCCEEEEEeCCeEEEEECCC-CeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEE--------
Q 001160 849 SKNDSYVMSASGGKVSLFNMMT-FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-------- 919 (1134)
Q Consensus 849 s~dg~~la~~sdg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~-------- 919 (1134)
...++.|+.|.++.+.++++.. .+...... ...|..+...+ +-+.|++- .|+.++++++..-.....
T Consensus 4 ~~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~--~~~I~ql~vl~-~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 4 DSWGDRLLVGTEDGLYVYDLSDPSKPTRILK--LSSITQLSVLP-ELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred ccCCCEEEEEECCCEEEEEecCCccceeEee--cceEEEEEEec-ccCEEEEE-cCCccEEEEchhhccccccccccccc
Confidence 3467888888844499999933 33333332 33499999999 55555544 359999999876433321
Q ss_pred ------ecCcccceEEEE--EecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE
Q 001160 920 ------LKGHQNRITGLA--FSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1134)
Q Consensus 920 ------l~~h~~~i~~l~--~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1134)
.......+...+ -...+...+.+.....|.+|.............+...- ...+..++|. ++.+++
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l----p~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL----PDPPSSIAFL--GNKICV 153 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc----CCCcEEEEEe--CCEEEE
Confidence 011222333333 11233333334445589988887632110001111111 1357888888 677888
Q ss_pred EECCeEEEEeCCCcceeccCCCCC----------CCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceee--ecCCcc
Q 001160 992 VHESQISVYDSKLECSRSWSPKDA----------LPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRC--RIGPSA 1059 (1134)
Q Consensus 992 ~~d~~v~vwd~~~~~~~~~~~~~~----------h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~--~~~~~~ 1059 (1134)
+..+...+.|++......+..... ...++..+.. +++.+|++- |..-.+.|. .|+... .+.
T Consensus 154 ~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~--- 226 (275)
T PF00780_consen 154 GTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ--- 226 (275)
T ss_pred EeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEE---
Confidence 878888999994333333322111 1234444444 345666653 443344444 354333 222
Q ss_pred cccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCcc
Q 001160 1060 YIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAEL 1104 (1134)
Q Consensus 1060 ~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~~ 1104 (1134)
-...|.++++.. .+|+.-+. +.|-||++.+++.
T Consensus 227 --------W~~~p~~~~~~~---pyli~~~~-~~iEV~~~~~~~l 259 (275)
T PF00780_consen 227 --------WSSAPQSVAYSS---PYLIAFSS-NSIEVRSLETGEL 259 (275)
T ss_pred --------cCCchhEEEEEC---CEEEEECC-CEEEEEECcCCcE
Confidence 124566677754 47776665 5599999999984
No 379
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.02 E-value=0.51 Score=50.26 Aligned_cols=160 Identities=12% Similarity=0.112 Sum_probs=83.1
Q ss_pred cCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEe-CCCc
Q 001160 878 MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS-IDKW 956 (1134)
Q Consensus 878 ~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd-~~~~ 956 (1134)
....+.+..+..++ +|++++++..-....-||--...-...-+.-..+|.+|.|+||+.+.+.+ ..+.|+.=+ ....
T Consensus 141 ~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 141 SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp -S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 34456788899999 89999877555455577643211112222345789999999998876654 788888777 2222
Q ss_pred ccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEe
Q 001160 957 EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1036 (1134)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~ 1036 (1134)
+.-....... ......+..++|.+++...|++..+.+.+=.=.++.-..-.....-......|.|.++.+-++.|
T Consensus 219 ~~w~~~~~~~----~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG- 293 (302)
T PF14870_consen 219 ETWSEPIIPI----KTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG- 293 (302)
T ss_dssp EEE---B-TT----SS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--
T ss_pred cccccccCCc----ccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-
Confidence 2111101111 11114578999999999999888886655333444444333323335678899998776666655
Q ss_pred cCCcEEEE
Q 001160 1037 CDGAIGVF 1044 (1134)
Q Consensus 1037 ~dg~I~vw 1044 (1134)
.+|.|--|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 78876544
No 380
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.00 E-value=0.18 Score=55.52 Aligned_cols=218 Identities=11% Similarity=0.130 Sum_probs=118.4
Q ss_pred CeEEEEEcCCCCccceeeEEecccCCeeEEE---EecCC--CcEEEEEEcC----------CCcEEEEECCCC----eee
Q 001160 430 HIVHLYTYNPTGELRQHLEIDAHVGGVNDIA---FAHPN--KQLCIVTCGD----------DKMIKVWDVVAG----RKQ 490 (1134)
Q Consensus 430 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~---~s~d~--~~~~l~sg~~----------d~~i~iwd~~~~----~~~ 490 (1134)
..|++.|..+.+.+. ...+.... .+.+++ |..+. +..+|+.|+. .|.|.++++.+. ..+
T Consensus 2 s~i~l~d~~~~~~~~-~~~l~~~E-~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLD-SFELEPNE-HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL 79 (321)
T ss_dssp -EEEEEETTTSSEEE-EEEEETTE-EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred cEEEEEeCCCCeEEE-EEECCCCc-eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence 357888887777653 33454333 344443 33221 1226666642 288999999884 122
Q ss_pred EEe--cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecC--CCCcEEEEEECCCCCEEEEEeeCCCCC
Q 001160 491 YTF--EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--PGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1134)
Q Consensus 491 ~~~--~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1134)
..+ ....++|++++.. + .+|+. +..+.|.+|++...+....... ....+.++... +++++.+.. .
T Consensus 80 ~~i~~~~~~g~V~ai~~~---~-~~lv~-~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~----~ 148 (321)
T PF03178_consen 80 KLIHSTEVKGPVTAICSF---N-GRLVV-AVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDA----M 148 (321)
T ss_dssp EEEEEEEESS-EEEEEEE---T-TEEEE-EETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEES----S
T ss_pred EEEEEEeecCcceEhhhh---C-CEEEE-eecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEc----c
Confidence 221 2357889999864 2 34443 3458999999988772222221 22255555544 557777743 3
Q ss_pred CcEEEE--eCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCC-------C--eeEEEEeCCCCCCCc
Q 001160 567 SHLVEW--NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-------M--NMLTTVDADGGLPAS 635 (1134)
Q Consensus 567 ~~i~~w--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~--~~~~~~~~~~~~~~v 635 (1134)
..+.++ +....+....-+......+.++.|-++++.++++..+|.+.++.... + +.......+-+ ..|
T Consensus 149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg-~~v 227 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLG-DIV 227 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-S-S-E
T ss_pred cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECC-Ccc
Confidence 345555 54333233222222233688888886777999999999999998762 2 22322233322 245
Q ss_pred ceE---EEcc--CC------CEEEEEeCCCcEEEEEC
Q 001160 636 PRL---RFNK--EG------SLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 636 ~~~---~~s~--d~------~~l~~~~~dg~i~iw~~ 661 (1134)
+++ .+.| .+ ..++.++.+|.|.+.-.
T Consensus 228 ~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 228 NSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp EEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred ceEEEEEeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence 666 4444 12 24888889999985443
No 381
>PRK10115 protease 2; Provisional
Probab=96.90 E-value=1.8 Score=52.85 Aligned_cols=244 Identities=10% Similarity=0.038 Sum_probs=122.7
Q ss_pred CeeEEEEecCCCeEEEEEeCCC----cEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEE
Q 001160 348 NVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~l 423 (1134)
.+..+.+||||++++.+-+.+| .|++-|+.+|..+.. .+.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------------------~i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------------------LLDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------------------cccC---cceEEEEeeCCCEE
Confidence 4778899999996555555444 688889988764321 0111 11469999999977
Q ss_pred EEEeCC------CeEEEEEcCCCCccceeeEEecccCCee-EEEEecCCCcEEEEEE-cCCCcEEEEECC--CCeeeEEe
Q 001160 424 GVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVN-DIAFAHPNKQLCIVTC-GDDKMIKVWDVV--AGRKQYTF 493 (1134)
Q Consensus 424 as~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~-~l~~s~d~~~~~l~sg-~~d~~i~iwd~~--~~~~~~~~ 493 (1134)
+....+ ..|..+++.++..-. ...+........ .+..+.|++.+++.+. ..++.+.+++.. ++.....+
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d-~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQD-ELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL 265 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHC-eEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence 776442 368888888773211 112333233333 3333447775332222 234578888843 34422222
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEec---CCeEEEEEccC-CCceeEecCC-CCcEEEEEECCCCCEEEEEeeCCCCCCc
Q 001160 494 EGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDY-LGSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1134)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~~~---d~~i~~wd~~~-~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1134)
..-.+....+. +. .+ .+++.... ...|...++.. .+....+... ...+..+.+. ++.|+.... .++...
T Consensus 266 ~~~~~~~~~~~-~~-~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~~~ 339 (686)
T PRK10115 266 PRRKDHEYSLD-HY-QH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGLTS 339 (686)
T ss_pred ECCCCCEEEEE-eC-CC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCEEE
Confidence 21222222222 22 22 23333222 22344444442 2222333332 3467777776 445554432 134555
Q ss_pred EEEEeCCCCeeEEEec-CccCcceEEEEEe--CCCC-EEEEEe---CCCeEEEEECCCCe
Q 001160 569 LVEWNESEGAIKRTYS-GFRKRSLGVVQFD--TTRN-RFLAAG---DEFQIKFWDMDNMN 621 (1134)
Q Consensus 569 i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~--~~~~-~l~~~~---~dg~i~iwd~~~~~ 621 (1134)
+++++..++. +..+. .... .+..+.++ +++. .+++.+ .-+.++.+|..+++
T Consensus 340 l~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 340 LRQINRKTRE-VIGIAFDDPA-YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEcCCCCc-eEEecCCCCc-eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 7777765433 33333 1111 23333344 3443 343332 45788888988764
No 382
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.89 E-value=0.0027 Score=43.67 Aligned_cols=39 Identities=36% Similarity=0.635 Sum_probs=34.9
Q ss_pred ceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEe
Q 001160 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1134)
Q Consensus 914 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd 952 (1134)
++++..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677788999999999999999999999999999996
No 383
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0042 Score=69.05 Aligned_cols=92 Identities=13% Similarity=0.259 Sum_probs=78.6
Q ss_pred CCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceE-EEEEcCCCCcEEEEEeCCCcEEEEEcCCceEE
Q 001160 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAAT-FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~-~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~ 917 (1134)
...+.-+.|+|.-.++|++. +|.|.+..+. .+.+.++.-|...++ +++|.| ||++||+|-.||+|++-|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 55688899999999999998 8999999998 888899987888877 999999 8999999999999999999998776
Q ss_pred EEe-cCcccceEEEEEe
Q 001160 918 TKL-KGHQNRITGLAFS 933 (1134)
Q Consensus 918 ~~l-~~h~~~i~~l~~s 933 (1134)
..+ ..-...|.++.|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 652 2234567777775
No 384
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.85 E-value=0.35 Score=49.62 Aligned_cols=203 Identities=14% Similarity=0.119 Sum_probs=121.9
Q ss_pred CCceEEEEeccCCCEEEEEe-CC--eEEEEECCCCeEEEEecCCC-CceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce
Q 001160 840 EESAACIALSKNDSYVMSAS-GG--KVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg--~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~ 915 (1134)
......+.|..+|.++-+.+ -| .|+.+|+.+++......-.. ----.++... +++....-.++...+||..+.+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccce
Confidence 34455688888888887776 44 69999999998876654222 1223455543 4555556678999999999999
Q ss_pred EEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECC
Q 001160 916 VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES 995 (1134)
Q Consensus 916 ~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~ 995 (1134)
.+.++.- .+.=+.|+ .|++.|+.......+.++|.++.+....
T Consensus 122 ~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~---------------------------------- 164 (264)
T PF05096_consen 122 KIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRT---------------------------------- 164 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEE----------------------------------
T ss_pred EEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEE----------------------------------
Confidence 9988863 45667787 4677777666677799999887553221
Q ss_pred eEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCccccccccc-----CCCC
Q 001160 996 QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV-----SNTA 1070 (1134)
Q Consensus 996 ~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~-----~~~~ 1070 (1134)
|.|.+ .+.. -..+.-+-|- +|...|=.=....|...|..+|+....+......+.... ....
T Consensus 165 -i~V~~-~g~p----------v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~d 231 (264)
T PF05096_consen 165 -IQVTD-NGRP----------VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDD 231 (264)
T ss_dssp -EE-EE-TTEE-------------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS
T ss_pred -EEEEE-CCEE----------CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCC
Confidence 11111 0111 1234444443 677666666777888899999998887776544432110 1122
Q ss_pred ccEEEeecCCCCCEEEEEeCCCcE
Q 001160 1071 HPLVIAPHPSEPNQIALGMSDGAV 1094 (1134)
Q Consensus 1071 ~~~~~~~~~~d~~~l~s~~~Dg~v 1094 (1134)
-.-.+||+|..+++++||=.=-.+
T Consensus 232 VLNGIAyd~~~~~l~vTGK~Wp~l 255 (264)
T PF05096_consen 232 VLNGIAYDPETDRLFVTGKLWPKL 255 (264)
T ss_dssp -EEEEEEETTTTEEEEEETT-SEE
T ss_pred eeEeEeEeCCCCEEEEEeCCCCce
Confidence 334899999887888887544433
No 385
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0044 Score=68.85 Aligned_cols=93 Identities=15% Similarity=0.157 Sum_probs=77.5
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceE-EEEEecCCCEEEEEcCCCcEEEEeCCCccccc
Q 001160 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT-GLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 960 (1134)
Q Consensus 882 ~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~-~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~ 960 (1134)
..|.-+.|+| .-.++|++..+|.|-+..+. .+.+.++.-|...++ +++|-|||+.||.|-.||+|++-|++++..+.
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4578899999 88999999999999999987 788889887877777 99999999999999999999999999988655
Q ss_pred ceeeecCCCCCCCCcCceEEEEC
Q 001160 961 SRFIQAPAGRQSPLVGETKVQFH 983 (1134)
Q Consensus 961 ~~~~~~~~~~~~~~~~v~~~~fs 983 (1134)
.+.... ...|..+.|+
T Consensus 99 ~~~~s~-------e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSV-------ETDISKGIWD 114 (665)
T ss_pred cccccc-------ccchheeecc
Confidence 431111 1456777776
No 386
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=96.79 E-value=0.0024 Score=59.73 Aligned_cols=82 Identities=15% Similarity=0.287 Sum_probs=60.3
Q ss_pred chhhHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001160 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1134)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1134)
++.. ++|+||.|.||+|+..|+..+|..|+++....+...+.+++++|..+....++.+++....++. .+.+
T Consensus 36 EL~~-lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~~Ky~I~ls~~s 114 (142)
T PF04494_consen 36 ELSR-LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRSNKYVIRLSRDS 114 (142)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHCSGEEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHhCCeeEEECHHH
Confidence 4444 9999999999999999999999999999888787767788999988887777766665554443 2444
Q ss_pred HHHHHHHHHh
Q 001160 140 RNIMLVELKK 149 (1134)
Q Consensus 140 r~~l~~~l~~ 149 (1134)
-..|+..|++
T Consensus 115 ~~lL~~fL~~ 124 (142)
T PF04494_consen 115 FSLLLQFLQE 124 (142)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4566666655
No 387
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.78 E-value=0.75 Score=51.24 Aligned_cols=84 Identities=12% Similarity=0.197 Sum_probs=61.5
Q ss_pred CCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCC-----------------CEE
Q 001160 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-----------------NRF 603 (1134)
Q Consensus 541 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~l 603 (1134)
...+.+++.+|++++.++. |.-|+|.++|+.++..++.++|..+..+.-+.....+ .+|
T Consensus 307 ~R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred CceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 3467899999998877764 4688999999999999999999877444333322221 122
Q ss_pred -EEEeCCCeEEEEECCCCeeEEEEeC
Q 001160 604 -LAAGDEFQIKFWDMDNMNMLTTVDA 628 (1134)
Q Consensus 604 -~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1134)
+-+-.-|.|.||.+.+|..+..+..
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEEe
Confidence 2366789999999999888877764
No 388
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.74 E-value=2.3 Score=51.89 Aligned_cols=197 Identities=13% Similarity=0.129 Sum_probs=115.0
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCCCC--------eEEEEeec--------------cCCccEEEEEecCCeEEEE
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP--------VYSVCPHH--------------KESIQFIFSTAIDGKIKAW 526 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~--------v~~i~~~~--------------~~~~~~l~s~~~d~~i~~w 526 (1134)
.++.++.++.|.-.|..+|+.+.++...... ...+++.. ...+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4666777788888888888877766432110 11222211 1123578889999999999
Q ss_pred EccCCCceeEecCCCC------------cEEEEEECC--CCCEEEEEeeCCC------CCCcEEEEeCCCCeeEEEecCc
Q 001160 527 LYDYLGSRVDYDAPGN------------WCTMMAYSA--DGTRLFSCGTSKE------GESHLVEWNESEGAIKRTYSGF 586 (1134)
Q Consensus 527 d~~~~~~~~~~~~~~~------------~v~~~~~s~--~~~~l~~~~~~~~------~~~~i~~wd~~~~~~~~~~~~~ 586 (1134)
|.++++....+..... ....+.-.| .+..+++++...| .++.|+-+|.++|+.+-.+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 9998888765532211 001111122 1345555543222 2678999999999988776521
Q ss_pred c---------C-------cce-EEEEEeCCCCEEEEEe------------------CCCeEEEEECCCCeeEEEEeCCCC
Q 001160 587 R---------K-------RSL-GVVQFDTTRNRFLAAG------------------DEFQIKFWDMDNMNMLTTVDADGG 631 (1134)
Q Consensus 587 ~---------~-------~~v-~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1134)
. . ..+ ...++++....++.+. ..+.|.-.|.++|+..-.++...+
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 0 0 001 2345555554444421 235677788888888776654221
Q ss_pred C-------CCcceEEEcc-CCC---EEEEEeCCCcEEEEECCCch
Q 001160 632 L-------PASPRLRFNK-EGS---LLAVTTSDNGIKILANSDGV 665 (1134)
Q Consensus 632 ~-------~~v~~~~~s~-d~~---~l~~~~~dg~i~iw~~~~~~ 665 (1134)
. ....-+.+.. +|+ .++.++.+|.+.++|.++|+
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 0 0111122333 563 78899999999999999994
No 389
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.73 E-value=0.38 Score=51.64 Aligned_cols=223 Identities=15% Similarity=0.097 Sum_probs=133.9
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCC
Q 001160 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1134)
Q Consensus 351 ~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg 430 (1134)
+..|.|+...++.+--..+.|.-|+..+++... + .+.+.+.++..-.++..|+++. .|
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~-~~p~~~~~~~~~d~~g~Lv~~~-~g 86 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------F-PSPGGFSSGALIDAGGRLIACE-HG 86 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------E-ECCCCcccceeecCCCeEEEEc-cc
Confidence 345677877677777778899999988764321 1 1333445555555555555553 33
Q ss_pred eEEEEEcCCCCccceeeEEe-cc-cCCeeEEEEecCCCcEEEEEEcCC------------CcEEEEECCCCeeeEEecCC
Q 001160 431 IVHLYTYNPTGELRQHLEID-AH-VGGVNDIAFAHPNKQLCIVTCGDD------------KMIKVWDVVAGRKQYTFEGH 496 (1134)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~-~h-~~~v~~l~~s~d~~~~~l~sg~~d------------~~i~iwd~~~~~~~~~~~~h 496 (1134)
+.+++.+++.......... +. ...-+.+...|+|. +.+ ++.. |.|+..|. .+..++.+..+
T Consensus 87 -~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wf-gt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~ 161 (307)
T COG3386 87 -VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWF-GDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDD 161 (307)
T ss_pred -cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEE-eCCCccccCccccCCcceEEEEcC-CCCEEEeecCc
Confidence 6677766554422221111 11 23567888899997 333 3322 23444443 56666666666
Q ss_pred CCCeEEEEeeccCCccEEEEE-ecCCeEEEEEccC-----CCc--eeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCc
Q 001160 497 EAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDY-----LGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1134)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~-~~d~~i~~wd~~~-----~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1134)
-..-+.++|+|++ +.+..+ +..+.|.-|++.. ... ...+....+..-.++...+|.+-+++.. +.+.
T Consensus 162 ~~~~NGla~SpDg--~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~ 236 (307)
T COG3386 162 LTIPNGLAFSPDG--KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGR 236 (307)
T ss_pred EEecCceEECCCC--CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCce
Confidence 6667889998876 455444 5568888887762 111 1223334455667778888888764432 2237
Q ss_pred EEEEeCCCCeeEEEecCccCcceEEEEEe-CCCCEEEEEe
Q 001160 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAG 607 (1134)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 607 (1134)
|.+|+.. |+.+..+..... .+.+++|- ++.+.|+..+
T Consensus 237 v~~~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 237 VVRFNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEEECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 9999988 999988888754 67777775 3445555443
No 390
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.69 E-value=0.39 Score=52.45 Aligned_cols=238 Identities=14% Similarity=0.110 Sum_probs=106.5
Q ss_pred CCcceEEee-ccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe--
Q 001160 783 SGLSLLALA-SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-- 859 (1134)
Q Consensus 783 ~g~~l~~~~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-- 859 (1134)
+.++|++.+ .++.|.|.|..+....|.-..+. ..+.+... .+ -.....+-.-|+|+.++++-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvI----------e~~ev~~k-~g----~s~PHT~Hclp~G~imIS~lGd 150 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVI----------EPEEVFEK-TG----LSRPHTVHCLPDGRIMISALGD 150 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-----------HHHHHHH-H-----EEEEEEEEE-SS--EEEEEEEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeee----------CHHHHHhh-cC----CCCCceeeecCCccEEEEeccC
Confidence 456676666 56889999987654433221110 00000000 00 11222344457998888762
Q ss_pred -C----CeEEEEECCCCeEEEEecCCC---CceEEEEEcCCCCcEEEEEe--------------------CCCcEEEEEc
Q 001160 860 -G----GKVSLFNMMTFKVMTMFMSPP---PAATFLAFHPQDNNIIAIGM--------------------EDSSVQIYNV 911 (1134)
Q Consensus 860 -d----g~i~vwd~~~~~~~~~~~~~~---~~i~~l~~s~~~~~~lasg~--------------------~dg~i~iwd~ 911 (1134)
+ |.+.++|-++.+......... .--..+-|.| ..+.+++.. .-.++.+||+
T Consensus 151 ~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~ 229 (461)
T PF05694_consen 151 ADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDW 229 (461)
T ss_dssp TTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEET
T ss_pred CCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEEC
Confidence 2 569999999888887765422 2345677788 777777654 2357999999
Q ss_pred CCceEEEEecCcc--cceEEEEEecC--CCEE-EEEcCCCcEEEE-eCCCcccccceeeecCCCCC----CC--------
Q 001160 912 RVDEVKTKLKGHQ--NRITGLAFSPT--LNAL-VSSGADAQLCMW-SIDKWEKLKSRFIQAPAGRQ----SP-------- 973 (1134)
Q Consensus 912 ~~~~~~~~l~~h~--~~i~~l~~s~d--~~~l-~s~~~D~~i~iW-d~~~~~~~~~~~~~~~~~~~----~~-------- 973 (1134)
.+.+.++++.--. .....|.|..| ..+= +.+--.++|..| .-+.++-....++..+.... .+
T Consensus 230 ~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~ 309 (461)
T PF05694_consen 230 STRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGA 309 (461)
T ss_dssp TTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-E
T ss_pred CCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccccccccc
Confidence 9999999886432 23556777654 3332 222233344444 33444433333333322110 00
Q ss_pred -CcCceEEEECCCCcEEEEE--ECCeEEEEeC----CCcceeccCCC-------------CCCCCCeEEEEEccCCCEEE
Q 001160 974 -LVGETKVQFHNDQTHLLVV--HESQISVYDS----KLECSRSWSPK-------------DALPAPISSAIYSCDGLLVY 1033 (1134)
Q Consensus 974 -~~~v~~~~fspdg~~l~~~--~d~~v~vwd~----~~~~~~~~~~~-------------~~h~~~v~~v~~s~dg~~l~ 1033 (1134)
..-++.+..|.|.++|.++ ..|.|+.||+ +.+...+...+ ..-.+...-+..|-||++|+
T Consensus 310 ~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY 389 (461)
T PF05694_consen 310 VPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY 389 (461)
T ss_dssp E------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred CCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence 1347899999999999996 5899999999 23333221111 11123447788999999988
Q ss_pred EEe
Q 001160 1034 AGF 1036 (1134)
Q Consensus 1034 ~~~ 1036 (1134)
..+
T Consensus 390 vTn 392 (461)
T PF05694_consen 390 VTN 392 (461)
T ss_dssp EE-
T ss_pred EEe
Confidence 754
No 391
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.043 Score=59.93 Aligned_cols=144 Identities=11% Similarity=0.117 Sum_probs=98.9
Q ss_pred CcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEE-----EEEecCCeEEEEEccCCCc-ee-Eec
Q 001160 466 KQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-----FSTAIDGKIKAWLYDYLGS-RV-DYD 538 (1134)
Q Consensus 466 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-----~s~~~d~~i~~wd~~~~~~-~~-~~~ 538 (1134)
..+++.++.....++-.|++.|+.+.+++-|.. |.-+.+.|+..+..+ +.|-.|+.|.-||.+-... .. ...
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 344677788888899999999999999887766 777777776554433 4466788899999885444 11 111
Q ss_pred C----CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEE
Q 001160 539 A----PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 614 (1134)
Q Consensus 539 ~----~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 614 (1134)
. ......|.+-..+| ++++++. +|-|++||--.......+++..+ +|..+..+.+|+++++.+. ..+.+
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~----~GdIRLYdri~~~AKTAlPgLG~-~I~hVdvtadGKwil~Tc~-tyLlL 496 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSL----KGDIRLYDRIGRRAKTALPGLGD-AIKHVDVTADGKWILATCK-TYLLL 496 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeec----CCcEEeehhhhhhhhhcccccCC-ceeeEEeeccCcEEEEecc-cEEEE
Confidence 1 22356677766666 5666664 66699999743344445666665 8999999999999887654 44555
Q ss_pred EEC
Q 001160 615 WDM 617 (1134)
Q Consensus 615 wd~ 617 (1134)
-++
T Consensus 497 i~t 499 (644)
T KOG2395|consen 497 IDT 499 (644)
T ss_pred EEE
Confidence 443
No 392
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.64 E-value=0.45 Score=48.74 Aligned_cols=175 Identities=10% Similarity=0.138 Sum_probs=111.0
Q ss_pred cCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEe--cCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCC
Q 001160 878 MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL--KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1134)
Q Consensus 878 ~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l--~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~ 955 (1134)
.+....+.+++|+| +.+.|.+......-.||=..+|+.+.++ .+..+ --++.+..++++.++--+++.+.+..++.
T Consensus 82 ~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D-pE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 82 LGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD-PETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCC-hhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 44455699999999 7777777777777777766788888875 34333 35788888999988888899999988876
Q ss_pred cccccce-eeecCCCCC-CCCcCceEEEECCCCcEEEEEECC-eEEEEeCC--CcceeccCCCCCC-------CCCeEEE
Q 001160 956 WEKLKSR-FIQAPAGRQ-SPLVGETKVQFHNDQTHLLVVHES-QISVYDSK--LECSRSWSPKDAL-------PAPISSA 1023 (1134)
Q Consensus 956 ~~~~~~~-~~~~~~~~~-~~~~~v~~~~fspdg~~l~~~~d~-~v~vwd~~--~~~~~~~~~~~~h-------~~~v~~v 1023 (1134)
....... ....+-+.. ....+--.++|.|.++.|.++.++ -+.+|.++ ...+.. .....+ -..|.++
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~-~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSV-HASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccc-ccccCcccccceEeeccccc
Confidence 5322111 111111111 112456789999999999987654 35555552 111111 001111 2356777
Q ss_pred EEcc-CCCEEEEEecCCcEEEEeCCCcceeeecC
Q 001160 1024 IYSC-DGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1134)
Q Consensus 1024 ~~s~-dg~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1056 (1134)
.|.+ .+.+|+.+.+++.+...|... +.+..+.
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G-~~~~~ls 271 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSG-EVIELLS 271 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCC-CeeeeEE
Confidence 7875 466778888888888888774 4454443
No 393
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.64 E-value=0.046 Score=65.22 Aligned_cols=145 Identities=12% Similarity=0.141 Sum_probs=98.1
Q ss_pred CcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCC-eEEEEeecc---CCccEEEEEecCCeEEEEEccCCCceeEe----
Q 001160 466 KQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP-VYSVCPHHK---ESIQFIFSTAIDGKIKAWLYDYLGSRVDY---- 537 (1134)
Q Consensus 466 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~i~~~~~---~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---- 537 (1134)
+.++|........|+-.|++.|+.+..+..|... |..++-... -...-.+.|-.++.+..||.+..+.....
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3334445556789999999999999999887654 666653211 01234667778889999999876532211
Q ss_pred -cCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEE
Q 001160 538 -DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (1134)
Q Consensus 538 -~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 616 (1134)
-......+|++-+.+|. ||+|+. +|.|++||--..+....+.+-.. +|..+..+.||+++++.+. ..+.+++
T Consensus 573 ~Y~~~~~Fs~~aTt~~G~-iavgs~----~G~IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc~-tyLlLi~ 645 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDGY-IAVGSN----KGDIRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATCK-TYLLLID 645 (794)
T ss_pred ccccCCCceEEEecCCce-EEEEeC----CCcEEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEeec-ceEEEEE
Confidence 12344678888888874 555553 77799999543333344555555 9999999999999888764 4566666
Q ss_pred C
Q 001160 617 M 617 (1134)
Q Consensus 617 ~ 617 (1134)
.
T Consensus 646 t 646 (794)
T PF08553_consen 646 T 646 (794)
T ss_pred E
Confidence 4
No 394
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.62 E-value=0.27 Score=51.58 Aligned_cols=163 Identities=15% Similarity=0.122 Sum_probs=95.7
Q ss_pred CceEEEEeccCCCEEEEEe--CCe--EEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEE-cCCce
Q 001160 841 ESAACIALSKNDSYVMSAS--GGK--VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN-VRVDE 915 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~s--dg~--i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd-~~~~~ 915 (1134)
..+.+.++|+||+.+|... ++. +.++... ....... ....++.-.|++ ++.+.+....+...+++. ..+++
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence 3688999999999888765 444 5555443 3333322 233788889999 687777777677777774 33333
Q ss_pred EEE-Ee--cCcccceEEEEEecCCCEEEEEc---CCCcEEEEeCCCcccccceeeecCCCCC-CCCcCceEEEECCCCcE
Q 001160 916 VKT-KL--KGHQNRITGLAFSPTLNALVSSG---ADAQLCMWSIDKWEKLKSRFIQAPAGRQ-SPLVGETKVQFHNDQTH 988 (1134)
Q Consensus 916 ~~~-~l--~~h~~~i~~l~~s~d~~~l~s~~---~D~~i~iWd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~fspdg~~ 988 (1134)
... .+ ..-.+.|+++.+||||..+|... .++.|.+=-+.....-....+..+.... .....+..+.|.+++.+
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 221 12 11112899999999999887665 3567777665432221111111111000 11146889999999998
Q ss_pred EEEE--ECCeEEE-EeCCCcce
Q 001160 989 LLVV--HESQISV-YDSKLECS 1007 (1134)
Q Consensus 989 l~~~--~d~~v~v-wd~~~~~~ 1007 (1134)
++.+ .+..+.. ....+...
T Consensus 180 ~V~~~~~~~~~~~~v~~dG~~~ 201 (253)
T PF10647_consen 180 VVLGRSAGGPVVRLVSVDGGPS 201 (253)
T ss_pred EEEeCCCCCceeEEEEccCCcc
Confidence 8874 3343333 44444433
No 395
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.62 E-value=0.11 Score=54.62 Aligned_cols=148 Identities=18% Similarity=0.108 Sum_probs=89.9
Q ss_pred ceEEEEEcCCCCcEEEEEe-CC--CcEEEEEcCCceEEEE-ecCcccceEEEEEecCCCEEEEEcCCCcEEEEe-CCCcc
Q 001160 883 AATFLAFHPQDNNIIAIGM-ED--SSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTLNALVSSGADAQLCMWS-IDKWE 957 (1134)
Q Consensus 883 ~i~~l~~s~~~~~~lasg~-~d--g~i~iwd~~~~~~~~~-l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd-~~~~~ 957 (1134)
.+.+.++|+ +++.+|... .+ ..++++.. +..... +.+ ..++...|++++...+....+...+++. ..+++
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999 677666554 23 34555543 332233 233 3688899999988877777677777774 33333
Q ss_pred cccceeeecCCCCCCCCcCceEEEECCCCcEEEEEE----CCeEEEEeC----CC--cce-eccCCCCCCCCCeEEEEEc
Q 001160 958 KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH----ESQISVYDS----KL--ECS-RSWSPKDALPAPISSAIYS 1026 (1134)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~----d~~v~vwd~----~~--~~~-~~~~~~~~h~~~v~~v~~s 1026 (1134)
.. ...+...... ..|..+.+||||.++|... ++.|.+--+ .+ ..+ ............++.++|.
T Consensus 100 ~~-~~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 100 GE-PVEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred ce-eEEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 21 1111111110 1689999999999999843 677777655 22 011 1111111225689999999
Q ss_pred cCCCEEEEEecCCc
Q 001160 1027 CDGLLVYAGFCDGA 1040 (1134)
Q Consensus 1027 ~dg~~l~~~~~dg~ 1040 (1134)
+++.+++.+...+.
T Consensus 175 ~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 175 DDSTLVVLGRSAGG 188 (253)
T ss_pred CCCEEEEEeCCCCC
Confidence 99998776665443
No 396
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.61 E-value=0.17 Score=59.90 Aligned_cols=233 Identities=11% Similarity=0.014 Sum_probs=125.3
Q ss_pred CCCCEEEEEeCC------CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCC------CcEEEEECC
Q 001160 418 PDGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWDVV 485 (1134)
Q Consensus 418 pdg~~las~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d------~~i~iwd~~ 485 (1134)
..+..++.|+.+ ..+..||..++.... ...+. +...-.+++... +. +.++||.| .++..||..
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCC
Confidence 345566677665 368888888763321 11222 222233444443 44 77888888 367788888
Q ss_pred CCeeeE--EecC--CCCCeEEEEeeccCCccEEEEEecCCe-----EEEEEccCCCceeEecCCCCcEEEEEECCCCCEE
Q 001160 486 AGRKQY--TFEG--HEAPVYSVCPHHKESIQFIFSTAIDGK-----IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1134)
Q Consensus 486 ~~~~~~--~~~~--h~~~v~~i~~~~~~~~~~l~s~~~d~~-----i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1134)
+++... .+.. +...+..+ +|.+.++|+.||. +..||..+.+-...-......-..-...-+|...
T Consensus 358 ~~~W~~~a~M~~~R~~~~v~~l------~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iY 431 (571)
T KOG4441|consen 358 TNQWTPVAPMNTKRSDFGVAVL------DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLY 431 (571)
T ss_pred CCceeccCCccCccccceeEEE------CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEE
Confidence 776443 1111 11122222 4478888988865 7778777655433322222212222223466677
Q ss_pred EEEeeCCCCC--CcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCeeEEEEeCC
Q 001160 557 FSCGTSKEGE--SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVDAD 629 (1134)
Q Consensus 557 ~~~~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~ 629 (1134)
++||.++..+ ..+..||..+++....-.......-..++. -++...+.||.|+ +|..||..+.+....-...
T Consensus 432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~ 510 (571)
T KOG4441|consen 432 IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT 510 (571)
T ss_pred EEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc
Confidence 7777554432 578899998877544333222211122322 2456667777665 3778888877655443222
Q ss_pred CCCCCcceEEEccCCCEEEEEeCCC-----cEEEEECCCc
Q 001160 630 GGLPASPRLRFNKEGSLLAVTTSDN-----GIKILANSDG 664 (1134)
Q Consensus 630 ~~~~~v~~~~~s~d~~~l~~~~~dg-----~i~iw~~~~~ 664 (1134)
.....+..+ .-++...++|+.|| +|..||..++
T Consensus 511 ~~rs~~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 511 SPRSAVGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred cccccccEE--EECCEEEEEecccCccccceeEEcCCCCC
Confidence 221122222 23567777888775 5666666554
No 397
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.60 E-value=1 Score=50.67 Aligned_cols=153 Identities=11% Similarity=0.046 Sum_probs=88.2
Q ss_pred CCeeEEEEecCCCcEEEEEEc--CCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCC--ccEEEEEecCCeEEEEEcc
Q 001160 454 GGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES--IQFIFSTAIDGKIKAWLYD 529 (1134)
Q Consensus 454 ~~v~~l~~s~d~~~~~l~sg~--~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~--~~~l~s~~~d~~i~~wd~~ 529 (1134)
.+|..++|. ||++ .+.|.- .+|.+++=| .+.+ |.-..|..+.|.|... ...+++.-..+.|.+|.+.
T Consensus 20 HPvhGlaWT-DGkq-VvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQ-VVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec-CCCE-EEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 478889995 6775 455432 233332222 1222 3344588899987532 2367788889999999875
Q ss_pred CC-----CceeEecCCCC-----cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCC
Q 001160 530 YL-----GSRVDYDAPGN-----WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599 (1134)
Q Consensus 530 ~~-----~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~ 599 (1134)
.. +.......+-. --..+.|+|....|++-.. ...-.+++++.........-...+.|.|.+|.+|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~----~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~D 166 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA----RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKD 166 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec----CceeEeeeeeeCCceEEEeccCCceEEEEEecCc
Confidence 22 11111111110 2246789999888876653 2222445554332222222233448999999999
Q ss_pred CCEEEEE-eCCCeEEEEECCC
Q 001160 600 RNRFLAA-GDEFQIKFWDMDN 619 (1134)
Q Consensus 600 ~~~l~~~-~~dg~i~iwd~~~ 619 (1134)
|++|+++ |..=.-++||-..
T Consensus 167 G~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 167 GQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CCEEEEEeCCeEEEEEecCch
Confidence 9988774 3444568888653
No 398
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.57 E-value=0.0064 Score=41.66 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=34.0
Q ss_pred CeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 001160 871 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 910 (1134)
Q Consensus 871 ~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd 910 (1134)
+++...+..|...|.++.|.+ .+.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 355667778889999999999 779999999999999996
No 399
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.52 E-value=0.28 Score=54.56 Aligned_cols=82 Identities=12% Similarity=0.208 Sum_probs=57.9
Q ss_pred CCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCc-eEEEEEcCCCC----------------c-EEEEE
Q 001160 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDN----------------N-IIAIG 900 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~-i~~l~~s~~~~----------------~-~lasg 900 (1134)
...+.+++.+|++++.|+.+ -|.|.++|+.++..++.++|..+. +.-+....... . +++.+
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 56689999999999888876 499999999999888888775443 22221111011 1 34445
Q ss_pred eCCCcEEEEEcCCceEEEEec
Q 001160 901 MEDSSVQIYNVRVDEVKTKLK 921 (1134)
Q Consensus 901 ~~dg~i~iwd~~~~~~~~~l~ 921 (1134)
-.-|.|.||.+..|..+..+.
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEE
Confidence 677899999998887766654
No 400
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.43 E-value=0.2 Score=43.41 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=66.6
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001160 411 VNRCVWGP---DG-LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1134)
Q Consensus 411 V~~i~~sp---dg-~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~ 486 (1134)
|+++++.. || +.|++|+.|..|++|+-+. .+. ++. -.+.|+++.-...+ .++.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~---Ei~-e~~~v~~L~~~~~~---~F~Y~l~NGTVGvY~~-- 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVA---EIT-ETDKVTSLCSLGGG---RFAYALANGTVGVYDR-- 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEE---EEe-cccceEEEEEcCCC---EEEEEecCCEEEEEeC--
Confidence 56666655 33 5899999999999999553 222 333 34568888777765 5899999999999983
Q ss_pred CeeeEEecCCCCCeEEEE-eeccCCc-cEEEEEecCCeEE
Q 001160 487 GRKQYTFEGHEAPVYSVC-PHHKESI-QFIFSTAIDGKIK 524 (1134)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~-~~~~~~~-~~l~s~~~d~~i~ 524 (1134)
...+...+.... +.+++ +..++|| .-|++|-.+|.|-
T Consensus 71 ~~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 SQRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 233344443333 55554 4344443 3578887777764
No 401
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.38 E-value=1.4 Score=48.54 Aligned_cols=243 Identities=16% Similarity=0.167 Sum_probs=119.7
Q ss_pred eEEEEeccCCCEEEEEeCCeEEEEECCCCeE---EEEec----CCCCceEEEEEcCC---CCcEEEEEeCC--------C
Q 001160 843 AACIALSKNDSYVMSASGGKVSLFNMMTFKV---MTMFM----SPPPAATFLAFHPQ---DNNIIAIGMED--------S 904 (1134)
Q Consensus 843 i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~---~~~~~----~~~~~i~~l~~s~~---~~~~lasg~~d--------g 904 (1134)
.++|+|.|||+++++-..|.|++++ ..+.. +..+. ........++|+|+ ++.+.++.+.. .
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 5789999999988876689999999 44443 22331 23345789999992 24444433321 2
Q ss_pred cEEEEEcCCc-------eEE-EEecC---cccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeec-CCCC--
Q 001160 905 SVQIYNVRVD-------EVK-TKLKG---HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA-PAGR-- 970 (1134)
Q Consensus 905 ~i~iwd~~~~-------~~~-~~l~~---h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~-~~~~-- 970 (1134)
.|.-|.+..+ +.+ ..+.. .......|+|.|||.+.++.+..+. --..+........+++. ..+.
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGCSTTSSTTEEEEEETTSSB-
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--cccccccccccceEEEecccCcCC
Confidence 3444444332 111 12222 1223456999999988888775443 00000000001111111 1110
Q ss_pred -----------C-----CCCcCceEEEECCC-CcEEEE--EECC--eEEEEeC---------CC-cc-----eeccCCC-
Q 001160 971 -----------Q-----SPLVGETKVQFHND-QTHLLV--VHES--QISVYDS---------KL-EC-----SRSWSPK- 1013 (1134)
Q Consensus 971 -----------~-----~~~~~v~~~~fspd-g~~l~~--~~d~--~v~vwd~---------~~-~~-----~~~~~~~- 1013 (1134)
. ........++|.|. |+++++ +.+. .|.+-.. .+ .. .......
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 0 01134568999999 777776 3333 2333211 00 00 0000000
Q ss_pred --------CCCCCCeEEEEEcc-------CCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeec
Q 001160 1014 --------DALPAPISSAIYSC-------DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPH 1078 (1134)
Q Consensus 1014 --------~~h~~~v~~v~~s~-------dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1134)
..+...++.+.|-. +|.++++.-..+.|....++.+..+..... .. ......++.+++.
T Consensus 241 ~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~----~~~~~r~~~v~~~ 314 (331)
T PF07995_consen 241 GFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEE--FL----GGFGGRPRDVAQG 314 (331)
T ss_dssp TS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE--EC----TTSSS-EEEEEEE
T ss_pred CcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEE--cc----ccCCCCceEEEEc
Confidence 01235667777753 455677666667788888775533322110 00 1122367889999
Q ss_pred CCCCCEEEEEeCCCcEE
Q 001160 1079 PSEPNQIALGMSDGAVH 1095 (1134)
Q Consensus 1079 ~~d~~~l~s~~~Dg~v~ 1095 (1134)
| ||.++++.+.+|.|.
T Consensus 315 p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 315 P-DGALYVSDDSDGKIY 330 (331)
T ss_dssp T-TSEEEEEE-TTTTEE
T ss_pred C-CCeEEEEECCCCeEe
Confidence 9 889999888888874
No 402
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.38 E-value=0.081 Score=59.00 Aligned_cols=157 Identities=14% Similarity=0.184 Sum_probs=91.5
Q ss_pred CceEEEEEcCCCCcEEEEEe--CCCcEEEEEcCCceEEEEecCcccceEEEEEecC----CCEEEEEcCCCcEEEEeCCC
Q 001160 882 PAATFLAFHPQDNNIIAIGM--EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT----LNALVSSGADAQLCMWSIDK 955 (1134)
Q Consensus 882 ~~i~~l~~s~~~~~~lasg~--~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d----~~~l~s~~~D~~i~iWd~~~ 955 (1134)
.++..++|.. +.+.+.+.- .+|.+++=| .+.+..|. .|.+++|+|- -..|........|.||.+..
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4788999985 555555542 334443322 23344444 4899999985 33555666778899999863
Q ss_pred c--ccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeE-EEEeC--CCcceeccCCCCCCCCCeEEEEEccCCC
Q 001160 956 W--EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQI-SVYDS--KLECSRSWSPKDALPAPISSAIYSCDGL 1030 (1134)
Q Consensus 956 ~--~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v-~vwd~--~~~~~~~~~~~~~h~~~v~~v~~s~dg~ 1030 (1134)
. +..+..+-+.-+-......-...+.|+|....|++-....+ .++++ +...++.=... .+.|.|.+|.+||+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~---~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT---SGLIHCACWTKDGQ 168 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC---CceEEEEEecCcCC
Confidence 2 21111111111110111123467899999999998433333 44555 33333322222 68899999999999
Q ss_pred EEEEEe-cCCcEEEEeCCCc
Q 001160 1031 LVYAGF-CDGAIGVFDAETL 1049 (1134)
Q Consensus 1031 ~l~~~~-~dg~I~vwd~~~~ 1049 (1134)
+|+++- ..=.-++||-...
T Consensus 169 RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEEEEeCCeEEEEEecCchh
Confidence 876543 3345788986654
No 403
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=0.073 Score=58.28 Aligned_cols=145 Identities=14% Similarity=0.141 Sum_probs=97.8
Q ss_pred EEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCC--EE-----EEEcCCCcEEEEeCCCcccccceeeecCC
Q 001160 896 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN--AL-----VSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1134)
Q Consensus 896 ~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~--~l-----~s~~~D~~i~iWd~~~~~~~~~~~~~~~~ 968 (1134)
+|.++.....++-.|++.|+.+..+.-|.+ |.-+.+.||.+ .| +.|-.|..|.-||..-...- .+....
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~q 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVVQ 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeeee
Confidence 445566667899999999999999998777 77788888753 12 23446778999998743221 122222
Q ss_pred CCCC-CCcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001160 969 GRQS-PLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047 (1134)
Q Consensus 969 ~~~~-~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~ 1047 (1134)
+|.- ....-.|.+-.-+|..++.+.+|.|++||-.+..-++..+ +...+|+.|..+.||++++.. .+..+.+-+..
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlP--gLG~~I~hVdvtadGKwil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALP--GLGDAIKHVDVTADGKWILAT-CKTYLLLIDTL 500 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhccc--ccCCceeeEEeeccCcEEEEe-cccEEEEEEEe
Confidence 2221 1133456666667766666889999999985555554443 347899999999999988754 46677776653
No 404
>PHA02713 hypothetical protein; Provisional
Probab=96.29 E-value=0.28 Score=58.22 Aligned_cols=225 Identities=12% Similarity=0.050 Sum_probs=114.5
Q ss_pred eEEEEECCCCeEE--EEecCCCCceEEEEEcCCCCcEEEEEeCC------CcEEEEEcCCceE--EEEecCcccceEEEE
Q 001160 862 KVSLFNMMTFKVM--TMFMSPPPAATFLAFHPQDNNIIAIGMED------SSVQIYNVRVDEV--KTKLKGHQNRITGLA 931 (1134)
Q Consensus 862 ~i~vwd~~~~~~~--~~~~~~~~~i~~l~~s~~~~~~lasg~~d------g~i~iwd~~~~~~--~~~l~~h~~~i~~l~ 931 (1134)
.+..||..+.+-. ..+...... .+++. - ++.+.++|+.+ ..+..||..+++- +..+....... ++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~- 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-V-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SL- 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-E-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eE-
Confidence 4677887765422 122211111 22333 2 67788888854 3477888776642 22222111111 22
Q ss_pred EecCCCEEEEEcCCC-----cEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEE-C-----------
Q 001160 932 FSPTLNALVSSGADA-----QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-E----------- 994 (1134)
Q Consensus 932 ~s~d~~~l~s~~~D~-----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-d----------- 994 (1134)
..-+|++.+.||.++ ++..||..+.+-.. +....... .....+ .-+|+..++|+ +
T Consensus 348 ~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~---~~~mp~~r---~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 348 AVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM---LPDMPIAL---SSYGMC--VLDQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred EEECCEEEEECCcCCCCCCceEEEEECCCCeEEE---CCCCCccc---ccccEE--EECCEEEEEeCCCccccccccccc
Confidence 234778888888764 47889988755322 11111110 111122 23677666643 2
Q ss_pred ------------CeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecC------CcEEEEeCCC-ccee--e
Q 001160 995 ------------SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD------GAIGVFDAET-LRFR--C 1053 (1134)
Q Consensus 995 ------------~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~d------g~I~vwd~~~-~~~~--~ 1053 (1134)
..+..||...+......+.. ......-+..-+|+..+.|+.+ ..+..||..+ .+-. .
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeecCCCC--cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 34788998554443333221 1112222234567777777754 2467788887 4322 2
Q ss_pred ecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCC--cEEEEecCCCccccCCCCCCCCCC
Q 001160 1054 RIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDG--AVHVVEPSDAELKWGGTPSQDNGP 1116 (1134)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg--~v~vW~~~~~~~~~~~~~~~~~~~ 1116 (1134)
.+... ....+++.. ++.+.++|+.|| ++-.+|+.+.+ |..-.|.+..+
T Consensus 498 ~m~~~-----------r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~--W~~~~~~~~~~ 547 (557)
T PHA02713 498 TTESR-----------LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE--WNHICHQHSNS 547 (557)
T ss_pred ccCcc-----------cccceeEEE--CCEEEEEeeecceeehhhcCccccc--ccchhhhcCCc
Confidence 22111 111122222 678999999998 77778877655 77666554433
No 405
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.29 E-value=2.4 Score=46.71 Aligned_cols=68 Identities=21% Similarity=0.186 Sum_probs=39.7
Q ss_pred ceEEEEEeC-------CCCEEEEEeCCCeEEEEECCCCeeEE-EEeCCCCC-CCcceEEEccCCCEEEEEeCCCcEE
Q 001160 590 SLGVVQFDT-------TRNRFLAAGDEFQIKFWDMDNMNMLT-TVDADGGL-PASPRLRFNKEGSLLAVTTSDNGIK 657 (1134)
Q Consensus 590 ~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~-~~v~~~~~s~d~~~l~~~~~dg~i~ 657 (1134)
.+..+.|.. .|.++++.-..+.|....++.+..+. ....-... ..+..+++.|||.+.++...+|.|.
T Consensus 254 ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 254 APTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp -EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 455555653 33455555556788888876543332 22211222 2678999999999888888788764
No 406
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.25 E-value=2.2 Score=46.85 Aligned_cols=257 Identities=13% Similarity=0.112 Sum_probs=108.7
Q ss_pred ceEEEEec--C-CCCeeEEEEe-----------cCCCeEEEEEeCCCcEEEEEccCccccccccceeecccccccccccc
Q 001160 337 KTVVRTLN--Q-GSNVMSMDFH-----------PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1134)
Q Consensus 337 ~~~~~~l~--h-~~~V~~v~~s-----------pdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1134)
++++..+. + .++....-|+ .+.++|++-|-.++.|.|.|+.+.....+ +.++.... .
T Consensus 52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~----l~KvIe~~-----e 122 (461)
T PF05694_consen 52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPR----LHKVIEPE-----E 122 (461)
T ss_dssp TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-E----EEEEE-HH-----H
T ss_pred ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCc----eEeeeCHH-----H
Confidence 45566554 3 3566666665 23445555555788999999986432211 11110000 0
Q ss_pred ccc-cCCcCeEEEEEcCCCCEEEEE--e----CCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEc-
Q 001160 403 LLN-DAAISVNRCVWGPDGLMLGVA--F----SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG- 474 (1134)
Q Consensus 403 ~l~-~h~~~V~~i~~spdg~~las~--~----~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~- 474 (1134)
+.. ..-..-..+---|+|..++++ . ..|-+.+.|-++.+.......-.+...--....|.|..+ .++|..
T Consensus 123 v~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeW 200 (461)
T PF05694_consen 123 VFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEW 200 (461)
T ss_dssp HHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTT--EEEE-B-
T ss_pred HHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEecc
Confidence 000 000111122233688888875 2 234677888776544332111111123346677778666 677654
Q ss_pred -------------------CCCcEEEEECCCCeeeEEecCCC--CCeEEEEeeccCCccE-EEEEecCCeEEEEEc-cCC
Q 001160 475 -------------------DDKMIKVWDVVAGRKQYTFEGHE--APVYSVCPHHKESIQF-IFSTAIDGKIKAWLY-DYL 531 (1134)
Q Consensus 475 -------------------~d~~i~iwd~~~~~~~~~~~~h~--~~v~~i~~~~~~~~~~-l~s~~~d~~i~~wd~-~~~ 531 (1134)
...++.+||+.+.+.++++.--. ....-+.|..+++..+ ++.+....+|..|-- +.+
T Consensus 201 g~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g 280 (461)
T PF05694_consen 201 GAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDG 280 (461)
T ss_dssp --HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETT
T ss_pred CChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCC
Confidence 24589999999999999886432 2345566665544333 333444555555533 222
Q ss_pred Cc----eeEecCC-----------------CCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe---eEEEec-Cc
Q 001160 532 GS----RVDYDAP-----------------GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYS-GF 586 (1134)
Q Consensus 532 ~~----~~~~~~~-----------------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~-~~ 586 (1134)
+- +..+... ..-|+.+.+|.|.++|..+.- ..|.|+.||+.+.. ++.+.. +.
T Consensus 281 ~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W---~~GdvrqYDISDP~~Pkl~gqv~lGG 357 (461)
T PF05694_consen 281 EWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNW---LHGDVRQYDISDPFNPKLVGQVFLGG 357 (461)
T ss_dssp EEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEET---TTTEEEEEE-SSTTS-EEEEEEE-BT
T ss_pred CeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcc---cCCcEEEEecCCCCCCcEEeEEEECc
Confidence 11 1122111 235789999999999998763 67889999997632 222211 10
Q ss_pred c--------------CcceEEEEEeCCCCEEEEEe
Q 001160 587 R--------------KRSLGVVQFDTTRNRFLAAG 607 (1134)
Q Consensus 587 ~--------------~~~v~~~~~~~~~~~l~~~~ 607 (1134)
. .+...-+..|.||++|+...
T Consensus 358 ~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 358 SIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 0 00224577788888777653
No 407
>PHA02713 hypothetical protein; Provisional
Probab=96.20 E-value=0.24 Score=58.81 Aligned_cols=190 Identities=7% Similarity=0.016 Sum_probs=96.2
Q ss_pred CCCcEEEEEEcCC------CcEEEEECCCCeeeE--EecCCCCCeEEEEeeccCCccEEEEEecCC-----eEEEEEccC
Q 001160 464 PNKQLCIVTCGDD------KMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDG-----KIKAWLYDY 530 (1134)
Q Consensus 464 d~~~~~l~sg~~d------~~i~iwd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~-----~i~~wd~~~ 530 (1134)
++. +.+.||.+ ..+..||+.+..... .+.........+.+ +|...+.|+.++ ++..||..+
T Consensus 303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~----~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI----DDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE----CCEEEEECCcCCCCCCceEEEEECCC
Confidence 454 56666643 357788887765421 11111111112221 336777777654 478898876
Q ss_pred CCceeEecCCC--CcEEEEEECCCCCEEEEEeeCCCC-------------------CCcEEEEeCCCCeeEEEecCccCc
Q 001160 531 LGSRVDYDAPG--NWCTMMAYSADGTRLFSCGTSKEG-------------------ESHLVEWNESEGAIKRTYSGFRKR 589 (1134)
Q Consensus 531 ~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~-------------------~~~i~~wd~~~~~~~~~~~~~~~~ 589 (1134)
.+-...-.... .....+ .-+|+..+.||.+... -..+..||+.+.+....-.....
T Consensus 377 ~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~- 453 (557)
T PHA02713 377 DKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG- 453 (557)
T ss_pred CeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc-
Confidence 54332111111 111122 2356666666643210 24588899887765432221111
Q ss_pred ceEEEEEeCCCCEEEEEeCC------CeEEEEECCC-CeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCC--cEEEEE
Q 001160 590 SLGVVQFDTTRNRFLAAGDE------FQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN--GIKILA 660 (1134)
Q Consensus 590 ~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg--~i~iw~ 660 (1134)
........-+++..+.||.+ ..+..||..+ .+-...............++ -+|++.++|+.++ .+..||
T Consensus 454 r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 454 TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcC
Confidence 11111122345666667643 2467899887 44332222221111222222 3688888999888 788888
Q ss_pred CCCc
Q 001160 661 NSDG 664 (1134)
Q Consensus 661 ~~~~ 664 (1134)
..+.
T Consensus 532 ~~~~ 535 (557)
T PHA02713 532 VYTY 535 (557)
T ss_pred cccc
Confidence 8776
No 408
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.19 E-value=0.92 Score=55.26 Aligned_cols=239 Identities=10% Similarity=0.038 Sum_probs=120.1
Q ss_pred CEEEEEe-CCeEEEEECCCCeEEEEecCCCCc--------eEEEEEcC---------------CCCcEEEEEeCCCcEEE
Q 001160 853 SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPA--------ATFLAFHP---------------QDNNIIAIGMEDSSVQI 908 (1134)
Q Consensus 853 ~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~--------i~~l~~s~---------------~~~~~lasg~~dg~i~i 908 (1134)
..+.+++ ++.|.-.|..+|+.+.++...... ...+++.. .++..|+.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 3444444 788999999999988887643211 22344421 02347778999999999
Q ss_pred EEcCCceEEEEecCcccce-------------EEEEEec--CCCEEEEEcC----------CCcEEEEeCCCccccccee
Q 001160 909 YNVRVDEVKTKLKGHQNRI-------------TGLAFSP--TLNALVSSGA----------DAQLCMWSIDKWEKLKSRF 963 (1134)
Q Consensus 909 wd~~~~~~~~~l~~h~~~i-------------~~l~~s~--d~~~l~s~~~----------D~~i~iWd~~~~~~~~~~~ 963 (1134)
.|.++|+.+..+.. .+.| ..+.-+| .+..++.++. +|.|+-+|+.+|+.+-..-
T Consensus 275 LDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 275 LDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99999998877642 1211 0111112 1334555532 6889999999999654332
Q ss_pred eecCCCCCCCCcCceEEEECCCCcEEEEEECC--eEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcE
Q 001160 964 IQAPAGRQSPLVGETKVQFHNDQTHLLVVHES--QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAI 1041 (1134)
Q Consensus 964 ~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~--~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I 1041 (1134)
...+.... . -++|.....+..+ ....+|.+...+-. . .+... ..+-...+........++|
T Consensus 354 ~g~p~~~~-----~-----~~~g~~~~~gg~n~W~~~s~D~~~glvy~--p-tGn~~----pd~~g~~r~~~~n~y~~sl 416 (764)
T TIGR03074 354 PGNPDPTA-----P-----PAPGETYTRNTPNSWSVASYDEKLGLVYL--P-MGNQT----PDQWGGDRTPADEKYSSSL 416 (764)
T ss_pred cCCCCccc-----C-----CCCCCEeccCCCCccCceEEcCCCCeEEE--e-CCCcc----ccccCCccccCcccccceE
Confidence 21111100 0 0122221111111 12223332222110 0 00000 0010001101111235567
Q ss_pred EEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCC---EEEEEeCCCcEEEEecCCCccccCCCC
Q 001160 1042 GVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPN---QIALGMSDGAVHVVEPSDAELKWGGTP 1110 (1134)
Q Consensus 1042 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~---~l~s~~~Dg~v~vW~~~~~~~~~~~~~ 1110 (1134)
.-.|++||+..-.++.... ..-.-.....++-+.....+|+ .++.++++|.+++.|..+++..|..+.
T Consensus 417 vALD~~TGk~~W~~Q~~~h-D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 417 VALDATTGKERWVFQTVHH-DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred EEEeCCCCceEEEecccCC-ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 7788888888766553110 0000001111222222211443 888999999999999999998887643
No 409
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.14 E-value=3.1 Score=46.62 Aligned_cols=283 Identities=14% Similarity=0.178 Sum_probs=150.7
Q ss_pred CcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc-----CCCEEEEE
Q 001160 784 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-----NDSYVMSA 858 (1134)
Q Consensus 784 g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~-----dg~~la~~ 858 (1134)
...+++|+..|.++||+.......+. ..+++..+ ..+|..++.-+ +...||+-
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~----------------~lllE~~l------~~PILqv~~G~F~s~~~~~~LaVL 94 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPE----------------DLLLETQL------KDPILQVECGKFVSGSEDLQLAVL 94 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCc----------------cEEEEEec------CCcEEEEEeccccCCCCcceEEEe
Confidence 35688899999999998643332221 11222212 45566555432 34466666
Q ss_pred eCCeEEEEECCC--Ce-------EEEEecCCCCc--eEEEEEcCC----CCcEEEEEeCCCcEEEEEcCCceEEEEecCc
Q 001160 859 SGGKVSLFNMMT--FK-------VMTMFMSPPPA--ATFLAFHPQ----DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH 923 (1134)
Q Consensus 859 sdg~i~vwd~~~--~~-------~~~~~~~~~~~--i~~l~~s~~----~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h 923 (1134)
...++.||.+.. +. .+..+..|.-. ...++.-|. +..+|.+-+.||.+.+|+-+.......+..
T Consensus 95 hP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~- 173 (418)
T PF14727_consen 95 HPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD- 173 (418)
T ss_pred cCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence 678888888731 11 12222223222 222333221 246889999999999999765544444443
Q ss_pred ccceEEEEEecCCCEEEEEcCCCcEEEEeCCCc--------------------ccccceeeecCCCCCCCCcCceEEEEC
Q 001160 924 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKW--------------------EKLKSRFIQAPAGRQSPLVGETKVQFH 983 (1134)
Q Consensus 924 ~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~--------------------~~~~~~~~~~~~~~~~~~~~v~~~~fs 983 (1134)
.---..++|.+....+++++.+..+.-|....- +.+.....-.. |.. ...+..+.++
T Consensus 174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~--~l~i~v~~~~ 250 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQ--ALDIQVVRFS 250 (418)
T ss_pred CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-Cce--eEEEEEEEcC
Confidence 112234778888888999998888888876321 10000000000 100 0123333444
Q ss_pred CCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEc----cCCC---EEEEEecCCcEEEEeCCCcceeeecC
Q 001160 984 NDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYS----CDGL---LVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1134)
Q Consensus 984 pdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s----~dg~---~l~~~~~dg~I~vwd~~~~~~~~~~~ 1056 (1134)
.....+++-..+++.+.+.+|. ++.....+. .+.....|. .++. .++.++.++++.||.=.+-.--+.+.
T Consensus 251 ~~~~~IvvLger~Lf~l~~~G~-l~~~krLd~--~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~ 327 (418)
T PF14727_consen 251 SSESDIVVLGERSLFCLKDNGS-LRFQKRLDY--NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP 327 (418)
T ss_pred CCCceEEEEecceEEEEcCCCe-EEEEEecCC--ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC
Confidence 4455566666777777777663 332222221 111111121 1222 47888899999999755432222221
Q ss_pred CcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCcccc
Q 001160 1057 PSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKW 1106 (1134)
Q Consensus 1057 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~~~~ 1106 (1134)
+..-.+.++..+.-...|++-+.+|.+.+-=+.+.-..+
T Consensus 328 -----------~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~ 366 (418)
T PF14727_consen 328 -----------HVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLF 366 (418)
T ss_pred -----------CCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCccc
Confidence 111223333333334699999999999887776544333
No 410
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.09 E-value=0.36 Score=41.94 Aligned_cols=84 Identities=14% Similarity=0.171 Sum_probs=56.6
Q ss_pred eeEEEEe---cCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCC
Q 001160 456 VNDIAFA---HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG 532 (1134)
Q Consensus 456 v~~l~~s---~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 532 (1134)
|+++++. .||.. -|+.|++|..|++|+ ....+.++. ....|.+++-... ..++.+..+|+|-+|+-. .
T Consensus 2 V~al~~~d~d~dg~~-eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~~~---~~F~Y~l~NGTVGvY~~~--~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGEN-ELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSLGG---GRFAYALANGTVGVYDRS--Q 72 (111)
T ss_pred eeEEEEEecCCCCcc-eEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEcCC---CEEEEEecCCEEEEEeCc--c
Confidence 4555554 45555 799999999999998 446677776 4556777765443 679999999999999652 3
Q ss_pred ceeEecCCCCcEEEEEE
Q 001160 533 SRVDYDAPGNWCTMMAY 549 (1134)
Q Consensus 533 ~~~~~~~~~~~v~~~~~ 549 (1134)
.....+.... +.++.+
T Consensus 73 RlWRiKSK~~-~~~~~~ 88 (111)
T PF14783_consen 73 RLWRIKSKNQ-VTSMAF 88 (111)
T ss_pred eeeeeccCCC-eEEEEE
Confidence 3444443333 444443
No 411
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=0.081 Score=62.98 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=77.2
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCC
Q 001160 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1134)
Q Consensus 419 dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~ 498 (1134)
.+..++.|+..|.+-..|+.+. +.....-..-.++|++++|+.+|. .++.|-.+|.|.+||+..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 5567899999999998888764 111111112457899999999999 899999999999999999999999988888
Q ss_pred CeEEEEeec-cCCccEEEEEecCCeEEEEEc
Q 001160 499 PVYSVCPHH-KESIQFIFSTAIDGKIKAWLY 528 (1134)
Q Consensus 499 ~v~~i~~~~-~~~~~~l~s~~~d~~i~~wd~ 528 (1134)
+.+++-++. .+++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 887775543 223346777766665 5644
No 412
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.03 E-value=1.5 Score=45.14 Aligned_cols=168 Identities=13% Similarity=0.111 Sum_probs=109.1
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEEC
Q 001160 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~ 484 (1134)
.+-...|+++.|+|+.+.|.+......-.||=...|+.++.. .+.+. ..-..+.+..+|+ +.++--.++.+.++.+
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti-PL~g~-~DpE~Ieyig~n~--fvi~dER~~~l~~~~v 157 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI-PLTGF-SDPETIEYIGGNQ--FVIVDERDRALYLFTV 157 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe-ccccc-CChhHeEEecCCE--EEEEehhcceEEEEEE
Confidence 344555999999999999999988888888877777777644 44442 3346688888887 7777788888888877
Q ss_pred CCCeeeEE-------ec--CC-CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe---cCC-------CCcE
Q 001160 485 VAGRKQYT-------FE--GH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAP-------GNWC 544 (1134)
Q Consensus 485 ~~~~~~~~-------~~--~h-~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~~-------~~~v 544 (1134)
..+..+.. +. .+ ......++|.+.. +.|..+-.-+-+.+|.+......... ..+ -..+
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~--~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD--HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCC--ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 65532221 11 12 5567789998765 67777777777777765532211111 111 1257
Q ss_pred EEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE
Q 001160 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1134)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1134)
.++.|++....+++-+ ++++.+.-.|.. |.++..
T Consensus 236 Sgl~~~~~~~~LLVLS---~ESr~l~Evd~~-G~~~~~ 269 (316)
T COG3204 236 SGLEFNAITNSLLVLS---DESRRLLEVDLS-GEVIEL 269 (316)
T ss_pred ccceecCCCCcEEEEe---cCCceEEEEecC-CCeeee
Confidence 7888988766666555 245666666654 443433
No 413
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.90 E-value=0.024 Score=55.31 Aligned_cols=105 Identities=17% Similarity=0.203 Sum_probs=72.7
Q ss_pred CCEEEEEe-CCeEEEEECCCCe-EEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcc-cceE
Q 001160 852 DSYVMSAS-GGKVSLFNMMTFK-VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-NRIT 928 (1134)
Q Consensus 852 g~~la~~s-dg~i~vwd~~~~~-~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~-~~i~ 928 (1134)
+.-+++|. +|.|.+|+..... ....+..-...|.++.-.-+++.+..+++.||.|+.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 34566665 9999999876221 1111222233444444433366789999999999999999998888888887 5666
Q ss_pred EEEEecCCCEEEEE--cCCCcEEEEeCCCc
Q 001160 929 GLAFSPTLNALVSS--GADAQLCMWSIDKW 956 (1134)
Q Consensus 929 ~l~~s~d~~~l~s~--~~D~~i~iWd~~~~ 956 (1134)
.+..+..+++++++ |.|..++.|+++.-
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhhh
Confidence 66666677777777 77888888887753
No 414
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.81 E-value=2.6 Score=43.36 Aligned_cols=192 Identities=9% Similarity=0.059 Sum_probs=113.1
Q ss_pred ccceEEEEEecCCcceEEeeccC--eeEEeecccccCCCCCCcccccCcccccCCCCCccc-cccCCCCCCCCceEEEEe
Q 001160 772 ASKVVRLIYTNSGLSLLALASNA--VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMT-NDINESKPTEESAACIAL 848 (1134)
Q Consensus 772 ~~~v~~~~~s~~g~~l~~~~~dg--~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~h~~~~i~~~~~ 848 (1134)
......+.|..+|..+-+.+.-| .|+.+| +.+|+... ..++. ..--..+++
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d----------------------~~tg~~~~~~~l~~----~~FgEGit~ 97 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVD----------------------LETGKVLQSVPLPP----RYFGEGITI 97 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEE----------------------TTTSSEEEEEE-TT----T--EEEEEE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEE----------------------CCCCcEEEEEECCc----cccceeEEE
Confidence 44567888888888777777765 455554 45555432 22322 333445666
Q ss_pred ccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcc----
Q 001160 849 SKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ---- 924 (1134)
Q Consensus 849 s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~---- 924 (1134)
..|.-+..|--++...+||..+.+.+.++.- .+.=..++. +++.|+.......++++|..+.+....+....
T Consensus 98 ~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~p 173 (264)
T PF05096_consen 98 LGDKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRP 173 (264)
T ss_dssp ETTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE
T ss_pred ECCEEEEEEecCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEE
Confidence 6555555555589999999999999988864 345556663 55666666666789999988877766654322
Q ss_pred -cceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecC-------CCCCCCCcCceEEEECCCCcEEEEEEC
Q 001160 925 -NRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAP-------AGRQSPLVGETKVQFHNDQTHLLVVHE 994 (1134)
Q Consensus 925 -~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~fspdg~~l~~~~d 994 (1134)
..+.-|.|- +|...|=.=....|..-|..+|+.....-+... ........-...+|+.|.+..+.+.+.
T Consensus 174 v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 174 VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp ---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 135556664 677777666667788888888875433221111 011111245689999988877766443
No 415
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.65 E-value=1.2 Score=43.95 Aligned_cols=137 Identities=12% Similarity=0.066 Sum_probs=79.3
Q ss_pred cCCeeEEEEecCCCcEEEEEEc-CCCcEEEEECCCCeeeEEecCCC--------CCeEEEEeeccCCccEEEEEecCCeE
Q 001160 453 VGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGRKQYTFEGHE--------APVYSVCPHHKESIQFIFSTAIDGKI 523 (1134)
Q Consensus 453 ~~~v~~l~~s~d~~~~~l~sg~-~d~~i~iwd~~~~~~~~~~~~h~--------~~v~~i~~~~~~~~~~l~s~~~d~~i 523 (1134)
..+.+.-..+|+|+ +.+ |. .|-. -......|..-.-+.+|+ +--+.++|+.+. -.+.++-+.+-+|
T Consensus 108 knR~NDgkvdP~Gr--yy~-GtMad~~-~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~-K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YYG-GTMADFG-DDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDA-KKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCc--eee-eeecccc-ccccccccEEEEeccCCCceeeehhccCCccccccccC-cEEEEEccCceEE
Confidence 34556667789998 432 32 1111 122222233222333333 223456776433 2455666778888
Q ss_pred EEEEcc--CCC-----ceeEecC----CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceE
Q 001160 524 KAWLYD--YLG-----SRVDYDA----PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLG 592 (1134)
Q Consensus 524 ~~wd~~--~~~-----~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~ 592 (1134)
.-||.+ ++. .+..+.. .....-.+++..+|++.+++.. .++|...|+.+|+.+.++..... .++
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt~-qit 257 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPTP-QIT 257 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCCC-ceE
Confidence 888843 221 2222221 1112234556667888777763 67899999999999999988766 899
Q ss_pred EEEEeCC
Q 001160 593 VVQFDTT 599 (1134)
Q Consensus 593 ~~~~~~~ 599 (1134)
|++|...
T Consensus 258 sccFgGk 264 (310)
T KOG4499|consen 258 SCCFGGK 264 (310)
T ss_pred EEEecCC
Confidence 9999754
No 416
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.65 E-value=0.039 Score=39.67 Aligned_cols=34 Identities=24% Similarity=0.540 Sum_probs=29.9
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccc
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRER 381 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~ 381 (1134)
...|.+++|+|... ++|.|+.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 45799999999998 8999999999999998 5543
No 417
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.51 E-value=0.047 Score=53.38 Aligned_cols=70 Identities=16% Similarity=0.140 Sum_probs=44.6
Q ss_pred cEEEE-EECCeEEEEeCC--CcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCc
Q 001160 987 THLLV-VHESQISVYDSK--LECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1058 (1134)
Q Consensus 987 ~~l~~-~~d~~v~vwd~~--~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 1058 (1134)
..+++ +.++.|.+|..+ +.....+.... ..-...|.-..++.+..+++.||.|+-|++.-++.+.....|
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~--e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h 143 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGE--ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQH 143 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhccc--ccceeccccccccceeEEeccCCceeeeccccCceeeeeccc
Confidence 34555 578999998883 33333332221 122222333346668899999999999999988888766544
No 418
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=0.048 Score=64.79 Aligned_cols=102 Identities=18% Similarity=0.298 Sum_probs=76.1
Q ss_pred CCCEEEEEe-CCeEEEEECCCCeE-EEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceE
Q 001160 851 NDSYVMSAS-GGKVSLFNMMTFKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT 928 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~ 928 (1134)
-+..++.|+ .|.+-..|+...-. ...=..-.++|++++|+. +|.+++.|-.+|.|.+||+..++.++.+.-|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 456778887 57888888765311 111122356899999999 999999999999999999999999999888877766
Q ss_pred EEEE---ecCCCEEEEEcCCCcEEEEeCCC
Q 001160 929 GLAF---SPTLNALVSSGADAQLCMWSIDK 955 (1134)
Q Consensus 929 ~l~~---s~d~~~l~s~~~D~~i~iWd~~~ 955 (1134)
++-+ ..++..+.++...|. +|.+.-
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEEEe
Confidence 6554 445667888877775 676643
No 419
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.37 E-value=6.2 Score=44.32 Aligned_cols=277 Identities=11% Similarity=0.146 Sum_probs=143.4
Q ss_pred cCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEc---C--CCCEEEEEeCCC
Q 001160 356 PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG---P--DGLMLGVAFSKH 430 (1134)
Q Consensus 356 pdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s---p--dg~~las~~~dg 430 (1134)
++++..+++|+..|.++||+...++......+ +-..-+.+|..++.- + +...||+ =.-.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~ll---------------lE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~ 97 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLL---------------LETQLKDPILQVECGKFVSGSEDLQLAV-LHPR 97 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEE---------------EEEecCCcEEEEEeccccCCCCcceEEE-ecCC
Confidence 44444678899999999999855432211000 011234566666643 2 3335555 4566
Q ss_pred eEEEEEcCCCC-------ccceeeEEecccC--CeeEEEEec----CCCcEEEEEEcCCCcEEEEECCCCeeeEEecC--
Q 001160 431 IVHLYTYNPTG-------ELRQHLEIDAHVG--GVNDIAFAH----PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG-- 495 (1134)
Q Consensus 431 ~i~iwd~~~~~-------~~~~~~~~~~h~~--~v~~l~~s~----d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~-- 495 (1134)
.+.||.+.... ... ...+..|.- ....++.-| .++. +|..=+-||.+.+++-+.-...+.+.+
T Consensus 98 kl~vY~v~~~~g~~~~g~~~~-L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~l 175 (418)
T PF14727_consen 98 KLSVYSVSLVDGTVEHGNQYQ-LELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDFL 175 (418)
T ss_pred EEEEEEEEecCCCcccCcEEE-EEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCCC
Confidence 78888873211 111 112223332 233333333 2233 788889999999999554433344443
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc-----------------------eeEecCCCC--cEEEEEEC
Q 001160 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-----------------------RVDYDAPGN--WCTMMAYS 550 (1134)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------------------~~~~~~~~~--~v~~~~~s 550 (1134)
..++ +++.+.. +.|++++.+..+..|....... .+.+..... .+..+.++
T Consensus 176 lPgP---l~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~ 250 (418)
T PF14727_consen 176 LPGP---LCYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFS 250 (418)
T ss_pred CCcC---eEEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcC
Confidence 3344 3454555 6889999998998886532100 011111111 23344444
Q ss_pred CCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeC----CC---CEEEEEeCCCeEEEEECCCCeeE
Q 001160 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT----TR---NRFLAAGDEFQIKFWDMDNMNML 623 (1134)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~----~~---~~l~~~~~dg~i~iwd~~~~~~~ 623 (1134)
.....+++-+ ...+.+.+. +|......+-.-. +...+.|.. ++ ..++.++.++++.||.=. +++
T Consensus 251 ~~~~~IvvLg-----er~Lf~l~~-~G~l~~~krLd~~-p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~ 321 (418)
T PF14727_consen 251 SSESDIVVLG-----ERSLFCLKD-NGSLRFQKRLDYN-PSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLV 321 (418)
T ss_pred CCCceEEEEe-----cceEEEEcC-CCeEEEEEecCCc-eeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEE
Confidence 4444444443 455777765 4554433332211 222222222 22 247888899999998533 333
Q ss_pred EEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.........-.+.-..|..-...|++-+.+|.+.+-=+-|.
T Consensus 322 WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 322 WSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred EecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 33322211111122223333457888888999988766555
No 420
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.33 E-value=2 Score=51.08 Aligned_cols=236 Identities=14% Similarity=0.152 Sum_probs=126.2
Q ss_pred ccCCCEEEEEe-C------CeEEEEECCCCeEEEEecC-CCCceEEEEEcCCCCcEEEEEeCC-C-----cEEEEEcCCc
Q 001160 849 SKNDSYVMSAS-G------GKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMED-S-----SVQIYNVRVD 914 (1134)
Q Consensus 849 s~dg~~la~~s-d------g~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~~lasg~~d-g-----~i~iwd~~~~ 914 (1134)
+..+.++++|+ . ..+..||..++.-.....- ....-.++++. ++.+.++|+.| | ++..||..++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 44556667776 4 3588899887633222211 22224455555 56888899998 3 5778887765
Q ss_pred e--EEEEecCcccceEEEEEecCCCEEEEEcCCCc-----EEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCc
Q 001160 915 E--VKTKLKGHQNRITGLAFSPTLNALVSSGADAQ-----LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT 987 (1134)
Q Consensus 915 ~--~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~-----i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~ 987 (1134)
+ .+..+........ ++ .-+|.+.|.||.||. +-.||..+.+.......... .-..-+-.-+|+
T Consensus 360 ~W~~~a~M~~~R~~~~-v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~--------r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFG-VA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR--------RSGHGVAVLGGK 429 (571)
T ss_pred ceeccCCccCccccce-eE-EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc--------eeeeEEEEECCE
Confidence 4 2222222222211 22 237888899999864 66777776553211111100 011122234566
Q ss_pred EEEEEE-C------CeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCc-----EEEEeCCCcceeeec
Q 001160 988 HLLVVH-E------SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA-----IGVFDAETLRFRCRI 1055 (1134)
Q Consensus 988 ~l~~~~-d------~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~-----I~vwd~~~~~~~~~~ 1055 (1134)
..++|+ + .++..||...+......+-. ......-.-.-++.+.+.|+.|+. |..+|..+.+-...-
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~--~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN--TRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCceeecCCcc--cccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 666642 2 45889999444443333221 111111123457888888888873 677888776544321
Q ss_pred CCcccccccccCCCCccEEEeecCCCCCEEEEEeCCC-----cEEEEecCCCccccCCCCC
Q 001160 1056 GPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDG-----AVHVVEPSDAELKWGGTPS 1111 (1134)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg-----~v~vW~~~~~~~~~~~~~~ 1111 (1134)
... .......++.. ++...++|+.|| +|-.||..+.+ |....+
T Consensus 508 ~m~---------~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~ 555 (571)
T KOG4441|consen 508 PMT---------SPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE 555 (571)
T ss_pred cCc---------cccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence 100 01111122221 678999999997 68888776655 655444
No 421
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.28 E-value=2.7 Score=42.59 Aligned_cols=210 Identities=13% Similarity=0.086 Sum_probs=129.0
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccce
Q 001160 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR 962 (1134)
Q Consensus 883 ~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~ 962 (1134)
.-..++-+| ||..-.++...|.|--.|-.+|+....--+....-..|...|||...++-+.. -|.-.|-++.+...
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~-- 138 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR-- 138 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE--
Confidence 345677788 88888888888888888999998766655555566778889999877765544 45556666655322
Q ss_pred eeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 001160 963 FIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIG 1042 (1134)
Q Consensus 963 ~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~ 1042 (1134)
...+..+ .........|.++|++-+++..|----.|.....++.+.... ...-..|+..|||..-++.-.+..|.
T Consensus 139 -f~lp~~~--a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq--G~gpyGi~atpdGsvwyaslagnaia 213 (353)
T COG4257 139 -FPLPLEH--ADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ--GGGPYGICATPDGSVWYASLAGNAIA 213 (353)
T ss_pred -eeccccc--CCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC--CCCCcceEECCCCcEEEEeccccceE
Confidence 1111222 125678899999999999864332112222333333333332 45567889999999888877788888
Q ss_pred EEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc-cccCCCC
Q 001160 1043 VFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE-LKWGGTP 1110 (1134)
Q Consensus 1043 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~-~~~~~~~ 1110 (1134)
..|-.++.. ..+...... +.. ...+--+| -|+.-+|....+.++-+|.++.. ..|.+|.
T Consensus 214 ridp~~~~a-ev~p~P~~~----~~g---sRriwsdp-ig~~wittwg~g~l~rfdPs~~sW~eypLPg 273 (353)
T COG4257 214 RIDPFAGHA-EVVPQPNAL----KAG---SRRIWSDP-IGRAWITTWGTGSLHRFDPSVTSWIEYPLPG 273 (353)
T ss_pred EcccccCCc-ceecCCCcc----ccc---ccccccCc-cCcEEEeccCCceeeEeCcccccceeeeCCC
Confidence 888777622 222211100 111 11222334 56777777777788888776554 4455544
No 422
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.26 E-value=1.4 Score=43.30 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=39.1
Q ss_pred EEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcC
Q 001160 846 IALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHP 891 (1134)
Q Consensus 846 ~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~ 891 (1134)
+++..+|.+.++.- .++|.-.|..+|+.+..+.-....|+|++|--
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 45566888766665 79999999999999999998899999999953
No 423
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.22 E-value=0.07 Score=38.42 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=28.9
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 001160 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN 438 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~dg~i~iwd~~ 438 (1134)
....|.+++|+|...+||.|+.+|.|.+|.++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34569999999999999999999999999984
No 424
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.96 E-value=1.8 Score=46.97 Aligned_cols=156 Identities=13% Similarity=0.195 Sum_probs=97.5
Q ss_pred ChhhhhhhcccCCcceeEeeCCCCCCccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccc
Q 001160 302 DSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRER 381 (1134)
Q Consensus 302 ~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~ 381 (1134)
|.+....+.+.+++..+..++-|-...+ -.....+++|.++.||+|.+ ++|+--.+.+|.+.+....+.
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpi----------Sfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~ 100 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPI----------SFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNS 100 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCc----------eeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCch
Confidence 4444556666777777766665522211 11112467999999999998 899999999999999854433
Q ss_pred cccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEE
Q 001160 382 LAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAF 461 (1134)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~ 461 (1134)
...... ..+..+..|....|+.+ .-+|.....| +.+|.+...+ +..+..+.|...|....|
T Consensus 101 ~l~~~~---------------~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~y 161 (657)
T KOG2377|consen 101 QLEYTQ---------------ECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMY 161 (657)
T ss_pred hhHHHH---------------HhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEE
Confidence 221000 01223445889999877 6677776666 7788776543 222245578889999999
Q ss_pred ecCCCcEEEEEEcCCCcEEEEECCCC
Q 001160 462 AHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1134)
Q Consensus 462 s~d~~~~~l~sg~~d~~i~iwd~~~~ 487 (1134)
+++..-.+++|+-..+++.=+-+.++
T Consensus 162 c~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 162 CPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred ccccceEeeeccccccccccEEEeec
Confidence 99988534444434444444444443
No 425
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.84 E-value=0.8 Score=53.55 Aligned_cols=112 Identities=15% Similarity=0.185 Sum_probs=78.3
Q ss_pred CeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEec-CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEc-----
Q 001160 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY----- 528 (1134)
Q Consensus 455 ~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~----- 528 (1134)
...-+.-+.-++ ..+.-+....+.|||...+...+.-. ...+.|.++.|...++|+.+++.+..+.|.++--
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 444455555555 34444556689999998887655322 4578999999999999999999999999999843
Q ss_pred cCCCc----ee--EecC-CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeC
Q 001160 529 DYLGS----RV--DYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1134)
Q Consensus 529 ~~~~~----~~--~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1134)
.+..+ .. .+.. ..++|.+..|.++|..++.+| +++.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG------Nqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG------NQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC------CEEEEECC
Confidence 11111 11 2233 336899999999998888764 35888874
No 426
>PHA03098 kelch-like protein; Provisional
Probab=94.74 E-value=1.2 Score=53.14 Aligned_cols=151 Identities=7% Similarity=-0.037 Sum_probs=73.1
Q ss_pred ccEEEEEecC-----CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCC--CCcEEEEeCCCCeeEEEe
Q 001160 511 IQFIFSTAID-----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG--ESHLVEWNESEGAIKRTY 583 (1134)
Q Consensus 511 ~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~--~~~i~~wd~~~~~~~~~~ 583 (1134)
+..++.|+.+ ..+..||..+.+-...-..........+..-+++..+.||....+ -..+..||+.+++....-
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS 422 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence 3677777765 346778776554332111111111111122355666666632221 246889998876654322
Q ss_pred cCccCcceEEEEEeCCCCEEEEEeCC--------CeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCC--
Q 001160 584 SGFRKRSLGVVQFDTTRNRFLAAGDE--------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD-- 653 (1134)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d-- 653 (1134)
.......-.++ ...++..++.||.+ ..+.+||..+.+....-...........+. -++++++.|+.+
T Consensus 423 ~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~ 499 (534)
T PHA03098 423 PLPISHYGGCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYE 499 (534)
T ss_pred CCCccccCceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCC
Confidence 11111011122 22345566666632 238889988765443221111111111222 367777777654
Q ss_pred ---CcEEEEECCCc
Q 001160 654 ---NGIKILANSDG 664 (1134)
Q Consensus 654 ---g~i~iw~~~~~ 664 (1134)
+.+.+||..+.
T Consensus 500 ~~~~~v~~yd~~~~ 513 (534)
T PHA03098 500 YYINEIEVYDDKTN 513 (534)
T ss_pred cccceeEEEeCCCC
Confidence 46788887765
No 427
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.66 E-value=9.1 Score=46.52 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=24.8
Q ss_pred CCceEEEEeccCCCEEEEEeCCeEEEEECC
Q 001160 840 EESAACIALSKNDSYVMSASGGKVSLFNMM 869 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~sdg~i~vwd~~ 869 (1134)
...|..+.++|+|+++|..+...|.|..+.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP 113 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELP 113 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 567899999999999999987666666664
No 428
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.62 E-value=6.7 Score=40.90 Aligned_cols=212 Identities=15% Similarity=0.148 Sum_probs=121.8
Q ss_pred CeeEEEEecCCCcEEEEEEcCCCcEEEEECC------CC-eeeEEecC-----CCCCeEEEEeeccCC----------cc
Q 001160 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV------AG-RKQYTFEG-----HEAPVYSVCPHHKES----------IQ 512 (1134)
Q Consensus 455 ~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~------~~-~~~~~~~~-----h~~~v~~i~~~~~~~----------~~ 512 (1134)
.-+.|+|+|.+. +-++....+...+||.. .. ..+-++.. .....+.+.|+...+ ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 357899999887 67777778899999986 12 22334432 234566676654321 13
Q ss_pred EEEEEecCCeEEEEEccCCCc-----eeEecCC-CCc-EEEEEEC--CCCCEEEEEeeCCCCCCcEEEEeCCCCeeEE--
Q 001160 513 FIFSTAIDGKIKAWLYDYLGS-----RVDYDAP-GNW-CTMMAYS--ADGTRLFSCGTSKEGESHLVEWNESEGAIKR-- 581 (1134)
Q Consensus 513 ~l~s~~~d~~i~~wd~~~~~~-----~~~~~~~-~~~-v~~~~~s--~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-- 581 (1134)
.++.+++||+|.-|...-... ...+... ... ...+++. ..+.+|+.+-. ..++|.++|-.-.+...
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 478889999999997532222 2223211 233 3345554 34677776643 47789999854322210
Q ss_pred EecCc--cC--cceEE--------EEE---eCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc----
Q 001160 582 TYSGF--RK--RSLGV--------VQF---DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK---- 642 (1134)
Q Consensus 582 ~~~~~--~~--~~v~~--------~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---- 642 (1134)
.+... .. .+... +.| .+++..=+.|..-|.|-+||+ .++.++.+...+....-+.++..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 01100 00 01110 111 122222223334578999998 477787776555555667787765
Q ss_pred --CCCEEEEEeCCCcEEEEECCCchhhhhhhcC
Q 001160 643 --EGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673 (1134)
Q Consensus 643 --d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 673 (1134)
.|.+|+---.||+|..||..++ +.+-.+..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L~~ 289 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSG-AQLGQLLD 289 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCC-ceeeeecC
Confidence 4667777677999999999888 44444433
No 429
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=2 Score=41.60 Aligned_cols=102 Identities=12% Similarity=0.072 Sum_probs=64.1
Q ss_pred CCCEEEEEe---CCeEEEEECCCCeEEEEecCCCCceEE--EEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCccc
Q 001160 851 NDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATF--LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 925 (1134)
Q Consensus 851 dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~--l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~ 925 (1134)
||.++.+.+ ...|++||+.+++.+....-....+.. +.-. +..+.+-.-.+|....+|.++.+++..+. ..+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTLEELGRFS-YEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHhhhhcccc-cCC
Confidence 555666555 356999999999887765433222211 1111 22344445578899999999988888776 334
Q ss_pred ceEEEEEecCCCEEEEEcCCCcEEEEeCCCcc
Q 001160 926 RITGLAFSPTLNALVSSGADAQLCMWSIDKWE 957 (1134)
Q Consensus 926 ~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~ 957 (1134)
.-+.++ .|+.-|+.++...+++.-|-++..
T Consensus 132 eGWgLt--~d~~~LimsdGsatL~frdP~tfa 161 (262)
T COG3823 132 EGWGLT--SDDKNLIMSDGSATLQFRDPKTFA 161 (262)
T ss_pred cceeee--cCCcceEeeCCceEEEecCHHHhh
Confidence 446665 355556666666677777776644
No 430
>PRK13684 Ycf48-like protein; Provisional
Probab=94.26 E-value=11 Score=41.70 Aligned_cols=157 Identities=11% Similarity=0.042 Sum_probs=89.3
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCcEEEE-EcCCceEEEE-ecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCccc
Q 001160 881 PPAATFLAFHPQDNNIIAIGMEDSSVQIY-NVRVDEVKTK-LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 958 (1134)
Q Consensus 881 ~~~i~~l~~s~~~~~~lasg~~dg~i~iw-d~~~~~~~~~-l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~ 958 (1134)
...+..+.+.| ++.+++++ ..|.+..- + ..++.-.. -.+-...++++.+.++++.++. +..|.+++=..+.++.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCc
Confidence 45688999999 77777654 55655532 2 22221111 2233457899999999887665 4567664333444332
Q ss_pred ccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecC
Q 001160 959 LKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD 1038 (1134)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~d 1038 (1134)
=. ....+.... ...+..++|.|++..++++.+|.+..=.-.++..........-......+.|..+++.+++ +..
T Consensus 248 W~--~~~~~~~~~--~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~ 322 (334)
T PRK13684 248 WS--KPIIPEITN--GYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQR 322 (334)
T ss_pred cc--cccCCcccc--ccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCC
Confidence 11 111110100 1346788999999988888887665422233433332211112346788888877776665 468
Q ss_pred CcEEEEeC
Q 001160 1039 GAIGVFDA 1046 (1134)
Q Consensus 1039 g~I~vwd~ 1046 (1134)
|.|--|+-
T Consensus 323 G~il~~~~ 330 (334)
T PRK13684 323 GVLLRYVG 330 (334)
T ss_pred ceEEEecC
Confidence 88877763
No 431
>PHA03098 kelch-like protein; Provisional
Probab=94.16 E-value=1.9 Score=51.63 Aligned_cols=194 Identities=11% Similarity=0.014 Sum_probs=90.9
Q ss_pred CCCCEEEEEeCCC------eEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCC-----CcEEEEECCC
Q 001160 418 PDGLMLGVAFSKH------IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVA 486 (1134)
Q Consensus 418 pdg~~las~~~dg------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d-----~~i~iwd~~~ 486 (1134)
.++..++.||.++ .+..||..+.+... ...+.........+ .-+++ +++.||.+ ..+..||..+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~--~~~~~--lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVT--VFNNR--IYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEE--EECCE--EEEEeCCCCCEecceEEEEcCCC
Confidence 3566667776532 57788877654321 11111111111222 22455 56667655 3577888877
Q ss_pred CeeeEE--ecCCCCCeEEEEeeccCCccEEEEEecC------CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEE
Q 001160 487 GRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1134)
Q Consensus 487 ~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1134)
++.... +...... .+++. . ++.+.+.|+.+ +.+..||..+.+-...-..........+..-+++..+.
T Consensus 368 ~~W~~~~~lp~~r~~-~~~~~--~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 443 (534)
T PHA03098 368 SKWREEPPLIFPRYN-PCVVN--V-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVI 443 (534)
T ss_pred CceeeCCCcCcCCcc-ceEEE--E-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEE
Confidence 654321 1111111 11121 1 23666666632 45788888765433221111111111122235555566
Q ss_pred EeeCCCC----CCcEEEEeCCCCeeEEEecCccC-cceEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCee
Q 001160 559 CGTSKEG----ESHLVEWNESEGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNM 622 (1134)
Q Consensus 559 ~~~~~~~----~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 622 (1134)
||.+... -..+.+||..+++....-..... .....+.+ ++..++.||.+ ..+.+||..+.+-
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 6542211 12488999887765432211111 01112222 56666667643 4678888876654
No 432
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.01 E-value=1.4 Score=51.59 Aligned_cols=123 Identities=12% Similarity=0.186 Sum_probs=77.1
Q ss_pred EecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEec-CcccceEEEEEe--cCCCEEEEEcCCCcEEEEe
Q 001160 876 MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-GHQNRITGLAFS--PTLNALVSSGADAQLCMWS 952 (1134)
Q Consensus 876 ~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~-~h~~~i~~l~~s--~d~~~l~s~~~D~~i~iWd 952 (1134)
++...-...+-+.-|. -++..++-+...++.|||...+.....-. ...+.|.++.|. ||++.+++.|-.+.|.++.
T Consensus 24 ~~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 24 TFETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred EEecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 3433344555555555 45555555555689999999886433321 356789999984 6899999999999999985
Q ss_pred CCCc----ccccceeeecC--CCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeC
Q 001160 953 IDKW----EKLKSRFIQAP--AGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1002 (1134)
Q Consensus 953 ~~~~----~~~~~~~~~~~--~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~ 1002 (1134)
-... .......+... ..+. ..+|.+..|.+||.+++ +.++.+.|+|-
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T--~h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHT--PHPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCC--CCCccceeEecCCeEEE-EeCCEEEEECC
Confidence 4211 11111111111 1222 14688999999997655 45678888876
No 433
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.93 E-value=9.3 Score=39.88 Aligned_cols=210 Identities=15% Similarity=0.153 Sum_probs=123.9
Q ss_pred CceEEEEeccCCCEEEEEe-CCeEEEEECC-------CCeEEEEecC-----CCCceEEEEEcCCCCcE-----------
Q 001160 841 ESAACIALSKNDSYVMSAS-GGKVSLFNMM-------TFKVMTMFMS-----PPPAATFLAFHPQDNNI----------- 896 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~s-dg~i~vwd~~-------~~~~~~~~~~-----~~~~i~~l~~s~~~~~~----------- 896 (1134)
..-+.++++|.+.+-++.. .+...+||.. ...++.++.. .....+.+.|.. ...+
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPS 101 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccce
Confidence 3457899999988777665 6889999986 2233444442 123567777774 2222
Q ss_pred -EEEEeCCCcEEEEEcCCceE-----EEEec-Ccccc-eEEEEEecC--CCEEEE-EcCCCcEEEEeCCCcccccc-eee
Q 001160 897 -IAIGMEDSSVQIYNVRVDEV-----KTKLK-GHQNR-ITGLAFSPT--LNALVS-SGADAQLCMWSIDKWEKLKS-RFI 964 (1134)
Q Consensus 897 -lasg~~dg~i~iwd~~~~~~-----~~~l~-~h~~~-i~~l~~s~d--~~~l~s-~~~D~~i~iWd~~~~~~~~~-~~~ 964 (1134)
++.+++||+|.=|.-.-+.. ...+. +-.+. -..+++... +.+|.. --..++|.++|-.-.+.... .+.
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 45678999999998432211 12222 11233 345666543 445544 44678899998654321100 000
Q ss_pred e--cCCCCCCCCcCceEEEECCCCcEEEE-E-------------ECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEcc-
Q 001160 965 Q--APAGRQSPLVGETKVQFHNDQTHLLV-V-------------HESQISVYDSKLECSRSWSPKDALPAPISSAIYSC- 1027 (1134)
Q Consensus 965 ~--~~~~~~~~~~~v~~~~fspdg~~l~~-~-------------~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~- 1027 (1134)
. .+.+.. ...+.- -.++++++ + .-|-|-+||..+..++++... +.-..-+.|+..|
T Consensus 182 DP~iPagyA-----PFnIqn-ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~-g~LNaPWG~a~APa 254 (336)
T TIGR03118 182 DPALPAGYA-----PFNVQN-LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASS-GRLNAPWGLAIAPE 254 (336)
T ss_pred CCCCCCCCC-----CcceEE-ECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccC-CcccCCceeeeChh
Confidence 0 011111 111111 12333333 2 125699999999998877543 3355667788755
Q ss_pred -----CCCEEEEEecCCcEEEEeCCCcceeeecCCc
Q 001160 1028 -----DGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1058 (1134)
Q Consensus 1028 -----dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 1058 (1134)
.|.+|+----||+|..||..+|+.+..+...
T Consensus 255 ~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~ 290 (336)
T TIGR03118 255 SFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDP 290 (336)
T ss_pred hhCCCCCCeEEeecCCceeEEecCCCCceeeeecCC
Confidence 5677777777999999999999999888743
No 434
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.78 E-value=22 Score=43.56 Aligned_cols=103 Identities=14% Similarity=0.168 Sum_probs=63.7
Q ss_pred EEeccCCCEEEEEeCCeEEEEECCCCeEEEEec--CCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcC--CceEEEEec
Q 001160 846 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR--VDEVKTKLK 921 (1134)
Q Consensus 846 ~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~--~~~~~~~l~ 921 (1134)
.|+.|-..++.+|-...+++||+...++++... .-...|+.+.+ .+..+++|...-.|..+..+ ..+. ..+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l-~~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQL-IVFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeE-EEEe
Confidence 466677778888778999999998877665543 23556888887 45677888766666554443 3343 3332
Q ss_pred C--cccceEEEEEecCCCEEEEEcCCCcEEEEeC
Q 001160 922 G--HQNRITGLAFSPTLNALVSSGADAQLCMWSI 953 (1134)
Q Consensus 922 ~--h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~ 953 (1134)
. -...|+++.+- |...+|.+..=|.+.+-.+
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEEC
Confidence 2 22336666664 4455666666565544443
No 435
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.70 E-value=3.9 Score=47.68 Aligned_cols=182 Identities=10% Similarity=0.077 Sum_probs=98.8
Q ss_pred eEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEe----cCcccceEEEEEecCCC
Q 001160 862 KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL----KGHQNRITGLAFSPTLN 937 (1134)
Q Consensus 862 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l----~~h~~~i~~l~~s~d~~ 937 (1134)
.|+||++. |..+..+.-..+.+..+.|+. +. -|++...||++++|++.. +.+... ......|..+.|..+|-
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD-DE-ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccC-Cc-eEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCce
Confidence 48888885 566555544444888999997 54 455678999999999853 322221 22333466666666665
Q ss_pred EEEEEcCCCcEE-EEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE--EECCeE--EEEeCCCc--ceecc
Q 001160 938 ALVSSGADAQLC-MWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV--VHESQI--SVYDSKLE--CSRSW 1010 (1134)
Q Consensus 938 ~l~s~~~D~~i~-iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~--~~d~~v--~vwd~~~~--~~~~~ 1010 (1134)
.+.+.+ |.+. +-+.+... ........+.. ..-.+...-++++.... .-+-.| .++..+.. ....+
T Consensus 141 avlt~~--g~v~~i~~~~~~~---~~~~~diP~~~---~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 141 AVLTVS--GQVILINGVEEPK---LRKMPDIPYNE---LPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL 212 (829)
T ss_pred EEEecC--CcEEEEcCCCcch---hhhCCCCCCcc---CCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence 555543 3333 33333211 11111111111 11122222222221111 111110 11111111 11111
Q ss_pred CCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCc
Q 001160 1011 SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1058 (1134)
Q Consensus 1011 ~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 1058 (1134)
... .+.+..+..||+.++|+.=..+|.|.+-+++..+.++++...
T Consensus 213 ~~~---~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~ 257 (829)
T KOG2280|consen 213 SWP---NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCT 257 (829)
T ss_pred CCC---CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCC
Confidence 111 367889999999999999999999999999999998888743
No 436
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.50 E-value=2.1 Score=48.05 Aligned_cols=149 Identities=10% Similarity=0.016 Sum_probs=82.1
Q ss_pred CceEEEEEcCCCCcEEEEEe-----------CCC-cEEEEEcCC--ceE--EEEecCcccceEEEEEecCCCEEEEEcCC
Q 001160 882 PAATFLAFHPQDNNIIAIGM-----------EDS-SVQIYNVRV--DEV--KTKLKGHQNRITGLAFSPTLNALVSSGAD 945 (1134)
Q Consensus 882 ~~i~~l~~s~~~~~~lasg~-----------~dg-~i~iwd~~~--~~~--~~~l~~h~~~i~~l~~s~d~~~l~s~~~D 945 (1134)
.....|+|.+ +|+++++-. ..+ .|.+++-.+ |+. ...+.........|++.+++ ++++ ...
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCC
Confidence 3567889998 788776542 223 677776432 322 23343333456889999998 5554 444
Q ss_pred CcEEEEeCCCccc---ccceeeecCCCC-CCCCcCceEEEECCCCcEEEE-EEC-------------------CeEEEEe
Q 001160 946 AQLCMWSIDKWEK---LKSRFIQAPAGR-QSPLVGETKVQFHNDQTHLLV-VHE-------------------SQISVYD 1001 (1134)
Q Consensus 946 ~~i~iWd~~~~~~---~~~~~~~~~~~~-~~~~~~v~~~~fspdg~~l~~-~~d-------------------~~v~vwd 1001 (1134)
...++.|...... ....++...... .........++|.|||.+.++ +.. +.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 4333445433211 111222222221 001134678999999988776 421 3355555
Q ss_pred CCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEe
Q 001160 1002 SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1036 (1134)
Q Consensus 1002 ~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~ 1036 (1134)
..+.....+... ......++|+++|+++++-.
T Consensus 171 pdg~~~e~~a~G---~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKLRVVAHG---FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeEEEEecC---cCCCccceECCCCCEEEEcc
Confidence 555444444322 34456899999999877644
No 437
>PHA02790 Kelch-like protein; Provisional
Probab=93.15 E-value=3.8 Score=47.91 Aligned_cols=183 Identities=12% Similarity=-0.001 Sum_probs=89.8
Q ss_pred cCCCEEEEEe-C-----CeEEEEECCCCeEEEE--ecCCCCceEEEEEcCCCCcEEEEEeCC--CcEEEEEcCCce--EE
Q 001160 850 KNDSYVMSAS-G-----GKVSLFNMMTFKVMTM--FMSPPPAATFLAFHPQDNNIIAIGMED--SSVQIYNVRVDE--VK 917 (1134)
Q Consensus 850 ~dg~~la~~s-d-----g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~~lasg~~d--g~i~iwd~~~~~--~~ 917 (1134)
.++..+++|+ + ..+..||..+++-... +.........+. - ++.+.++|+.+ ..+..||..+++ .+
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~-~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A-NNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E-CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 3455666665 3 2477788876543222 221111122222 3 67888888864 357888876543 22
Q ss_pred EEecCcccceEEEEEecCCCEEEEEcCCC---cEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEEC
Q 001160 918 TKLKGHQNRITGLAFSPTLNALVSSGADA---QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE 994 (1134)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~~~D~---~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d 994 (1134)
..+....... + +..-+|++.+.||.++ .+..||..+.+-.....+..+. . ...+..-+|+..+.|
T Consensus 347 ~~l~~~r~~~-~-~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r------~--~~~~~~~~~~IYv~G-- 414 (480)
T PHA02790 347 PSLLKPRCNP-A-VASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH------Y--KSCALVFGRRLFLVG-- 414 (480)
T ss_pred CCCCCCCccc-E-EEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc------c--cceEEEECCEEEEEC--
Confidence 2332111111 1 2234788888888653 4677888765532211111111 1 112223456655555
Q ss_pred CeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCc
Q 001160 995 SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETL 1049 (1134)
Q Consensus 995 ~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~d-----g~I~vwd~~~~ 1049 (1134)
|.+.+||.+.+............... ++ ..-+|+..+.|+.+ ..|.+||..++
T Consensus 415 G~~e~ydp~~~~W~~~~~m~~~r~~~-~~-~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 415 RNAEFYCESSNTWTLIDDPIYPRDNP-EL-IIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CceEEecCCCCcEeEcCCCCCCcccc-EE-EEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 45788998555444333221101112 22 23467777777754 23555555543
No 438
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.64 E-value=3.1 Score=46.68 Aligned_cols=147 Identities=11% Similarity=0.072 Sum_probs=78.4
Q ss_pred ceEEEEEecCCCEEEEEc-----------CCC-cEEEEeCCCc--ccccceeeecCCCCCCCCcCceEEEECCCCcEEEE
Q 001160 926 RITGLAFSPTLNALVSSG-----------ADA-QLCMWSIDKW--EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1134)
Q Consensus 926 ~i~~l~~s~d~~~l~s~~-----------~D~-~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1134)
...+|+|.++|+++++-. ..+ .|.+++-..+ +..+..... .+. .....+++.++| .+++
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa--~~l----~~p~Gi~~~~~G-lyV~ 87 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA--EEL----SMVTGLAVAVGG-VYVA 87 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee--cCC----CCccceeEecCC-EEEe
Confidence 456889999998877653 122 5766665432 211111111 111 235789999999 4444
Q ss_pred EECCeEEEE-eCCCc-----ceec----cCCC-CCCCCCeEEEEEccCCCEEEEEecC-------------------CcE
Q 001160 992 VHESQISVY-DSKLE-----CSRS----WSPK-DALPAPISSAIYSCDGLLVYAGFCD-------------------GAI 1041 (1134)
Q Consensus 992 ~~d~~v~vw-d~~~~-----~~~~----~~~~-~~h~~~v~~v~~s~dg~~l~~~~~d-------------------g~I 1041 (1134)
....|..| |.++. .... +... ..+......++|.|||.+.++-+.. |.|
T Consensus 88 -~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 88 -TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred -CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Confidence 34445544 55321 1111 1111 0023447789999999876654421 334
Q ss_pred EEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCC
Q 001160 1042 GVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDG 1092 (1134)
Q Consensus 1042 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg 1092 (1134)
.-++..+++.- .+. ..-..+..++|+| +|+++++-..++
T Consensus 167 ~r~~pdg~~~e-~~a----------~G~rnp~Gl~~d~-~G~l~~tdn~~~ 205 (367)
T TIGR02604 167 FRYNPDGGKLR-VVA----------HGFQNPYGHSVDS-WGDVFFCDNDDP 205 (367)
T ss_pred EEEecCCCeEE-EEe----------cCcCCCccceECC-CCCEEEEccCCC
Confidence 44555443321 111 1225567899999 788887755444
No 439
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.57 E-value=21 Score=40.09 Aligned_cols=152 Identities=13% Similarity=0.090 Sum_probs=87.9
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEE-EEEcCCceE--EEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCccccc
Q 001160 884 ATFLAFHPQDNNIIAIGMEDSSVQ-IYNVRVDEV--KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 960 (1134)
Q Consensus 884 i~~l~~s~~~~~~lasg~~dg~i~-iwd~~~~~~--~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~ 960 (1134)
...+..++ ++.+++++. .|.+. -||- |+. ...-..-...++++.|.+++.+++.+ .+|.+ +|....++.-.
T Consensus 241 f~~v~~~~-dG~~~~vg~-~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~ 314 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSS-RGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEE 314 (398)
T ss_pred eeeEEEcC-CCCEEEEEC-CccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccc
Confidence 34456667 777777654 44433 3442 221 11112234568999999999877655 55654 45444443110
Q ss_pred c-eeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCC
Q 001160 961 S-RFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG 1039 (1134)
Q Consensus 961 ~-~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg 1039 (1134)
. .+...... .....+..+.|.+++..++++..|.+....-.++..........-......+.|.++++-+++| .+|
T Consensus 315 ~~~f~~~~~~--~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G 391 (398)
T PLN00033 315 DFDFEEADIK--SRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDG 391 (398)
T ss_pred ccceeecccC--CCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCc
Confidence 0 01111111 0113478899999999999998888777665555433332222225678899998887766665 677
Q ss_pred cEEEE
Q 001160 1040 AIGVF 1044 (1134)
Q Consensus 1040 ~I~vw 1044 (1134)
.|.-|
T Consensus 392 ~il~~ 396 (398)
T PLN00033 392 VLLRY 396 (398)
T ss_pred EEEEe
Confidence 76554
No 440
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.47 E-value=1.2 Score=53.99 Aligned_cols=146 Identities=12% Similarity=0.033 Sum_probs=93.0
Q ss_pred CCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeee-----EEecC------CCCCeEEEEeeccCCccEEEEEecCCe
Q 001160 454 GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-----YTFEG------HEAPVYSVCPHHKESIQFIFSTAIDGK 522 (1134)
Q Consensus 454 ~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~-----~~~~~------h~~~v~~i~~~~~~~~~~l~s~~~d~~ 522 (1134)
-+|..+...+|+....++..+.+-.|..+|+++-..- .-|.. ......++.|+|.-. ...+.+..|+.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dls 179 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLS 179 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccc
Confidence 3567777778877545556666668999998753211 11111 223455667777654 45667788899
Q ss_pred EEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCc---cCcceEEEEEeCC
Q 001160 523 IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF---RKRSLGVVQFDTT 599 (1134)
Q Consensus 523 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~---~~~~v~~~~~~~~ 599 (1134)
|++..+........--.-....++++|+|.|+.++.+- +.|++.-|... ++....+.+. ....|.+++|-..
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~----nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGR----NNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeEec----CCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecc
Confidence 88886654333332223445789999999999999985 47778777643 3433333332 2336889999877
Q ss_pred CCEEEE
Q 001160 600 RNRFLA 605 (1134)
Q Consensus 600 ~~~l~~ 605 (1134)
..++++
T Consensus 255 ~eflvv 260 (1405)
T KOG3630|consen 255 QEFLVV 260 (1405)
T ss_pred eeEEEE
Confidence 777665
No 441
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.32 E-value=0.041 Score=63.77 Aligned_cols=228 Identities=10% Similarity=0.061 Sum_probs=120.4
Q ss_pred CCeEEEEECCCCeE-EEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcC--CceEEEE-----ecCcccceEEEE
Q 001160 860 GGKVSLFNMMTFKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR--VDEVKTK-----LKGHQNRITGLA 931 (1134)
Q Consensus 860 dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~--~~~~~~~-----l~~h~~~i~~l~ 931 (1134)
.+.+++-+..+.-. -..+++..+.+-.++|...+...++ ..-|.+.||+++ .|+.... .......+.-+.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 45677766654221 1224556677888888653333332 344789999976 3443322 233333444455
Q ss_pred Eec---CCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCC--------cCceEEEECCCCcEEEE-EECCeEEE
Q 001160 932 FSP---TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL--------VGETKVQFHNDQTHLLV-VHESQISV 999 (1134)
Q Consensus 932 ~s~---d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~--------~~v~~~~fspdg~~l~~-~~d~~v~v 999 (1134)
|.| +..++..+-.++++++....+... ....+|.... +-+.--..||||+.+++ ++||.++.
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~------~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR------SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGF 261 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH------HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccce
Confidence 544 556677777888888877765432 1111222110 11112237999999999 78999988
Q ss_pred EeC------CCcceeccCCCCCCCCCeEEEEEccC-------CC--EEEEEe-cCCcEEEEeCCCcceeeecCCcccccc
Q 001160 1000 YDS------KLECSRSWSPKDALPAPISSAIYSCD-------GL--LVYAGF-CDGAIGVFDAETLRFRCRIGPSAYIPT 1063 (1134)
Q Consensus 1000 wd~------~~~~~~~~~~~~~h~~~v~~v~~s~d-------g~--~l~~~~-~dg~I~vwd~~~~~~~~~~~~~~~~~~ 1063 (1134)
|.+ ...|+..|.++++|....+- |... +. ++++++ .+..+++|.-..-+++-..........
T Consensus 262 ~Qiyi~g~~~~rclhewkphd~~p~vC~l--c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV 339 (1283)
T KOG1916|consen 262 YQIYITGKIVHRCLHEWKPHDKHPRVCWL--CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIV 339 (1283)
T ss_pred eeeeeeccccHhhhhccCCCCCCCceeee--eccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceEee
Confidence 887 44566677777655433222 3321 12 344444 345699998877666522221111111
Q ss_pred cccCCCCccEE-EeecCCCCCEEEEEeCCCcEEEEecC
Q 001160 1064 YAVSNTAHPLV-IAPHPSEPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1064 ~~~~~~~~~~~-~~~~~~d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
+.+...+..+. +.|.. ..+++-+.||.|.+|.-.
T Consensus 340 ~p~~~~v~~~~~~~~~~---~~~v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 340 GPHDGEVTDLSMCQWMT---TRLVSRSVDGTIKIWQNR 374 (1283)
T ss_pred cCCCccccchhhhHHHH---HHHHHhhhHHHHHHhhcc
Confidence 11222222211 11111 245567778888888643
No 442
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.23 E-value=0.029 Score=60.65 Aligned_cols=242 Identities=15% Similarity=0.193 Sum_probs=136.3
Q ss_pred EEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEE
Q 001160 776 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 855 (1134)
Q Consensus 776 ~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~l 855 (1134)
....+-+.+..++.++.+..+..||-. |+.+.. .. . .+....++|..+|..+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-----------------------gq~~le-~n---~-tg~aldm~wDkegdvl 89 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-----------------------GQVILE-LN---P-TGKALDMAWDKEGDVL 89 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-----------------------cceecc-cC---C-chhHhhhhhccccchh
Confidence 345667777778888888777777632 111110 11 1 4556678888888877
Q ss_pred EEEe--CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEe
Q 001160 856 MSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS 933 (1134)
Q Consensus 856 a~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s 933 (1134)
++.. .+.+.+||+.+......-.+-...-.-+.|++ +...++.|...|.+.|++-.+.+.+...-.|..+++++++.
T Consensus 90 avlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 90 AVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred hhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence 7665 68999999986443222122222223378999 89999999999999999987776655555599999999999
Q ss_pred cCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCC--cCceEEEECCCCcEEEEEECCeEEEE--eC---CCcc
Q 001160 934 PTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL--VGETKVQFHNDQTHLLVVHESQISVY--DS---KLEC 1006 (1134)
Q Consensus 934 ~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~fspdg~~l~~~~d~~v~vw--d~---~~~~ 1006 (1134)
+.+. .+.++.|..+.+-...+... .+....+..... .-..-=.|..-|..+.....+.+.+. .+ +...
T Consensus 169 lEd~-vil~dcd~~L~v~~qegeta----~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pv 243 (615)
T KOG2247|consen 169 LEDY-VILCDCDNTLSVTTQEGETA----SLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPV 243 (615)
T ss_pred ccce-eeecCcHHHHHHhhhcccee----eeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCcc
Confidence 8764 55566665554433322111 000011110000 00001122333333433222221111 11 1111
Q ss_pred eeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeec
Q 001160 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055 (1134)
Q Consensus 1007 ~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~ 1055 (1134)
-..+... .+.+.++.|--||..+ -+..-|.|..-.+.++++..++
T Consensus 244 al~fq~~---~gni~cyrwylDg~i~-igf~ag~iV~iS~h~aeLgaef 288 (615)
T KOG2247|consen 244 ALQFQEK---YGNIHCYRWYLDGYIL-IGFDAGYIVSISAHNAELGAEF 288 (615)
T ss_pred ceEeeec---CCceeEEEEecccccc-ccccceeEEEEeccchHHHHHH
Confidence 1122222 5678888888888644 4556677777778877766544
No 443
>PHA02790 Kelch-like protein; Provisional
Probab=92.19 E-value=5.1 Score=46.85 Aligned_cols=184 Identities=7% Similarity=-0.115 Sum_probs=83.1
Q ss_pred CCCEEEEEeCC-----CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCC--CcEEEEECCCCeeeE
Q 001160 419 DGLMLGVAFSK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQY 491 (1134)
Q Consensus 419 dg~~las~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d--~~i~iwd~~~~~~~~ 491 (1134)
++..+++||.+ ..+..||..++.... ...+....... +++ .-++. +.+.||.+ .++..||..+++...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~-~~~m~~~r~~~-~~v-~~~~~--iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIP-IPPMNSPRLYA-SGV-PANNK--LYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEE-CCCCCchhhcc-eEE-EECCE--EEEECCcCCCCceEEEECCCCeEEE
Confidence 34556666643 256778877653221 11111111111 122 23555 55666643 468889877665432
Q ss_pred --EecCCCCCeEEEEeeccCCccEEEEEecCC---eEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCC
Q 001160 492 --TFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1134)
Q Consensus 492 --~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1134)
.+.........+.. +|...+.|+.++ .+..||..+.+-...-..........+..-+++..+.|+
T Consensus 346 ~~~l~~~r~~~~~~~~----~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG------ 415 (480)
T PHA02790 346 MPSLLKPRCNPAVASI----NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR------ 415 (480)
T ss_pred CCCCCCCCcccEEEEE----CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC------
Confidence 12111111111211 336677777553 467788765443321111111111112223455555543
Q ss_pred CcEEEEeCCCCeeEEEecCccC-cceEEEEEeCCCCEEEEEeCC-----CeEEEEECCCC
Q 001160 567 SHLVEWNESEGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNM 620 (1134)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 620 (1134)
.+.+||..+++....-..... .... ++ .-+++..+.||.+ ..+..||..+.
T Consensus 416 -~~e~ydp~~~~W~~~~~m~~~r~~~~-~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 416 -NAEFYCESSNTWTLIDDPIYPRDNPE-LI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred -ceEEecCCCCcEeEcCCCCCCccccE-EE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 267788887665432221111 0122 22 2356666667643 24555665544
No 444
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.83 E-value=18 Score=38.73 Aligned_cols=190 Identities=13% Similarity=0.117 Sum_probs=102.6
Q ss_pred eEEEEeccCCCEEEE--Ee-C----------CeEEEEECCCCeEEEEecC------CCCceEEEEEcCCCC----cEEEE
Q 001160 843 AACIALSKNDSYVMS--AS-G----------GKVSLFNMMTFKVMTMFMS------PPPAATFLAFHPQDN----NIIAI 899 (1134)
Q Consensus 843 i~~~~~s~dg~~la~--~s-d----------g~i~vwd~~~~~~~~~~~~------~~~~i~~l~~s~~~~----~~las 899 (1134)
|..+...+++++-+. |. + -+|.+||+.+++.++++.- ..+....+.+...++ .++..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 455666666665443 21 1 2689999999998887642 234577787765222 23333
Q ss_pred Ee-CCCcEEEEEcCCceEEEEecCcc-------------------cceEEEEEec---CCCEEEEEcCCCcEEEEeCCCc
Q 001160 900 GM-EDSSVQIYNVRVDEVKTKLKGHQ-------------------NRITGLAFSP---TLNALVSSGADAQLCMWSIDKW 956 (1134)
Q Consensus 900 g~-~dg~i~iwd~~~~~~~~~l~~h~-------------------~~i~~l~~s~---d~~~l~s~~~D~~i~iWd~~~~ 956 (1134)
+. ..+-|.|+|+.+++.-+.+..+. +.+.+++.+| |+++|.-....+ -++|.+.+.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~ 161 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS 161 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence 33 33589999999987655543221 2366667655 666666555433 245554432
Q ss_pred ccccceeeecC--------CCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeCCC----cceeccCCCCCCCCCeEEE
Q 001160 957 EKLKSRFIQAP--------AGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKL----ECSRSWSPKDALPAPISSA 1023 (1134)
Q Consensus 957 ~~~~~~~~~~~--------~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~~~----~~~~~~~~~~~h~~~v~~v 1023 (1134)
-.......... -|... .....++++++|..+++ ...+.|..|+..+ +....+......-..+.++
T Consensus 162 ~L~~~~~~~~~~~~~~v~~lG~k~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~ 239 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDLGDKG--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGL 239 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEEEE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEE
T ss_pred HhhCccccccccccccceeccccC--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeecccee
Confidence 11110000000 01100 13467888999998888 5788999999954 2222222221114567888
Q ss_pred EEcc--CCCEEEEE
Q 001160 1024 IYSC--DGLLVYAG 1035 (1134)
Q Consensus 1024 ~~s~--dg~~l~~~ 1035 (1134)
++.+ +|.+.+..
T Consensus 240 ~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 240 KIDPEGDGYLWVLS 253 (287)
T ss_dssp EE-T--TS-EEEEE
T ss_pred eeccccCceEEEEE
Confidence 8888 77765554
No 445
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.64 E-value=1.9 Score=52.41 Aligned_cols=146 Identities=16% Similarity=0.104 Sum_probs=95.6
Q ss_pred CCceEEEEeccCCCEEEEEe--C-CeEEEEECCCCeEEE-----EecC------CCCceEEEEEcCCCCcEEEEEeCCCc
Q 001160 840 EESAACIALSKNDSYVMSAS--G-GKVSLFNMMTFKVMT-----MFMS------PPPAATFLAFHPQDNNIIAIGMEDSS 905 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s--d-g~i~vwd~~~~~~~~-----~~~~------~~~~i~~l~~s~~~~~~lasg~~dg~ 905 (1134)
...+..+...+|+...++.. + ..|.+||+.+...-. -|.. ......++.|.|.-....|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 55677788888988776654 3 369999997643221 1111 12345678888743344566778999
Q ss_pred EEEEEcCCce-EEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECC
Q 001160 906 VQIYNVRVDE-VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN 984 (1134)
Q Consensus 906 i~iwd~~~~~-~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp 984 (1134)
|++..+.-.. ....+. .....++++|+|.|+.++.|-..|++.-|...-.... .+..+.... ...|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~---~ip~Pp~~e--~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS---EIPEPPVEE--NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceee---cccCCCcCC--CcceeEEEEec
Confidence 9988765332 222222 4566899999999999999999999988876543211 111221111 26789999998
Q ss_pred CCcEEEE
Q 001160 985 DQTHLLV 991 (1134)
Q Consensus 985 dg~~l~~ 991 (1134)
...++++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 8888887
No 446
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.48 E-value=0.56 Score=32.67 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=26.8
Q ss_pred CCeeEEEEecCCC--eEEEEEeCCCcEEEEEccCc
Q 001160 347 SNVMSMDFHPQQQ--TILLVGTNVGDISLWEVGSR 379 (1134)
Q Consensus 347 ~~V~~v~~spdg~--~llasg~~dg~i~iwd~~~~ 379 (1134)
+.|.+++|||... -||+..-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4789999997543 48888888899999999863
No 447
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.24 E-value=0.13 Score=59.96 Aligned_cols=197 Identities=11% Similarity=0.148 Sum_probs=108.3
Q ss_pred CCceEEEEecc-CCCEEEEEe-CCeEEEEECCC--CeEEEEe-----cCCCC---ceEEEEEcCCCCcEEEEEeCCCcEE
Q 001160 840 EESAACIALSK-NDSYVMSAS-GGKVSLFNMMT--FKVMTMF-----MSPPP---AATFLAFHPQDNNIIAIGMEDSSVQ 907 (1134)
Q Consensus 840 ~~~i~~~~~s~-dg~~la~~s-dg~i~vwd~~~--~~~~~~~-----~~~~~---~i~~l~~s~~~~~~lasg~~dg~i~ 907 (1134)
.+.+..+.|.. +-..++ . -|.+.|||++- |+....+ ..... .|..+-|-+ ..-++..+..+++|+
T Consensus 132 ~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~-~~~~ic~~~~~~~i~ 208 (1283)
T KOG1916|consen 132 PGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV-NKVYICYGLKGGEIR 208 (1283)
T ss_pred CCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc-ccceeeeccCCCcee
Confidence 44555566543 111121 2 37788888763 3332222 11122 344444555 567888888999999
Q ss_pred EEEcCCceEEEEecCcccceEEEE-----------EecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcC
Q 001160 908 IYNVRVDEVKTKLKGHQNRITGLA-----------FSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVG 976 (1134)
Q Consensus 908 iwd~~~~~~~~~l~~h~~~i~~l~-----------~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 976 (1134)
+..+.+... ..+++|+..++.++ .||||+.+|+++.||.+++|.+.-......+++..-..|.. ..
T Consensus 209 lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p 285 (1283)
T KOG1916|consen 209 LLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HP 285 (1283)
T ss_pred EeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CC
Confidence 987765432 45667877766554 48999999999999999999875433333333333333331 11
Q ss_pred ceEEEECCC-------C--cEEEEEE--CCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCC------------EE
Q 001160 977 ETKVQFHND-------Q--THLLVVH--ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL------------LV 1032 (1134)
Q Consensus 977 v~~~~fspd-------g--~~l~~~~--d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~------------~l 1032 (1134)
-.|..|... + .+++++. ++.+++|.- -.+|+..+. ...|..|. -+||+ .+
T Consensus 286 ~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~-----~d~v~iV~-p~~~~v~~~~~~~~~~~~~ 359 (1283)
T KOG1916|consen 286 RVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKL-----IDGVQIVG-PHDGEVTDLSMCQWMTTRL 359 (1283)
T ss_pred ceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhc-----ccceEeec-CCCccccchhhhHHHHHHH
Confidence 122223322 1 2344443 467889987 556653222 23344444 33333 23
Q ss_pred EEEecCCcEEEEeCCC
Q 001160 1033 YAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 1033 ~~~~~dg~I~vwd~~~ 1048 (1134)
+.-+-|+.|.+|-=..
T Consensus 360 v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 360 VSRSVDGTIKIWQNRK 375 (1283)
T ss_pred HHhhhHHHHHHhhcch
Confidence 4455678888886443
No 448
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.15 E-value=12 Score=37.27 Aligned_cols=149 Identities=10% Similarity=0.044 Sum_probs=83.2
Q ss_pred cEEEEEeCCCcEEEEEcC--CceEEEEecCcccceEEEEEecCCCEEEEEcCC------CcEEEE---eCC--Ccccccc
Q 001160 895 NIIAIGMEDSSVQIYNVR--VDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD------AQLCMW---SID--KWEKLKS 961 (1134)
Q Consensus 895 ~~lasg~~dg~i~iwd~~--~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D------~~i~iW---d~~--~~~~~~~ 961 (1134)
..|..+.....|.+|++. ..+.+.+|..- +.|..+.++..|++|+|--.+ ..+|+| ... ..+....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455445667789999998 33556667644 889999999999999986432 245654 322 1111111
Q ss_pred eeeecCCCC--------------CCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcce--e---ccCCC---CCC--C
Q 001160 962 RFIQAPAGR--------------QSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECS--R---SWSPK---DAL--P 1017 (1134)
Q Consensus 962 ~~~~~~~~~--------------~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~--~---~~~~~---~~h--~ 1017 (1134)
+........ .+....+.+++--|-..-|+++.++.+.+|.+..... . .+... --| +
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 111100000 0011356777777777778888889999998832222 1 11100 001 2
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001160 1018 APISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047 (1134)
Q Consensus 1018 ~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~ 1047 (1134)
-....++|. +.|+|..+ +-.++++.+.
T Consensus 188 ~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 188 FKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred ceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 224445553 45777664 5567777653
No 449
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.97 E-value=0.72 Score=32.13 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=27.3
Q ss_pred CceEEEEEcCCCC--cEEEEEeCCCcEEEEEcCC
Q 001160 882 PAATFLAFHPQDN--NIIAIGMEDSSVQIYNVRV 913 (1134)
Q Consensus 882 ~~i~~l~~s~~~~--~~lasg~~dg~i~iwd~~~ 913 (1134)
++|.++.|||..+ .+|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998555 6999998899999999985
No 450
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.95 E-value=25 Score=41.48 Aligned_cols=166 Identities=10% Similarity=0.087 Sum_probs=80.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcccee-eEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEE-EECCCC
Q 001160 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH-LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV-WDVVAG 487 (1134)
Q Consensus 410 ~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~-~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~i-wd~~~~ 487 (1134)
.+..+.||.+..+| +...+|++++|++.... +... ..+......|..+.|..+|- .+.+. +|.+.+ -+....
T Consensus 85 ~lI~mgWs~~eeLI-~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV--avlt~--~g~v~~i~~~~~~ 158 (829)
T KOG2280|consen 85 ELIGMGWSDDEELI-CVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV--AVLTV--SGQVILINGVEEP 158 (829)
T ss_pred CeeeecccCCceEE-EEeccceEEEeecchhh-hcccccccccccCceeEEEEecCce--EEEec--CCcEEEEcCCCcc
Confidence 78899999877655 45699999999987532 2110 11122334566666766663 33333 344433 332221
Q ss_pred eeeEEecC---CCCCeEEEEee-ccCCccEEEEEecCCeEEEEEccCCC-ceeEecCCCCcEEEEEECCCCCEEEEEeeC
Q 001160 488 RKQYTFEG---HEAPVYSVCPH-HKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1134)
Q Consensus 488 ~~~~~~~~---h~~~v~~i~~~-~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1134)
.+++++. ..-+-.|-... +......++-....--..++-.+... ....+......+..++.||+.++|+.-..
T Consensus 159 -~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~- 236 (829)
T KOG2280|consen 159 -KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE- 236 (829)
T ss_pred -hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEec-
Confidence 2222221 11111111111 11100111111100000111111111 11222233457888999999999987653
Q ss_pred CCCCCcEEEEeCCCCeeEEEecCc
Q 001160 563 KEGESHLVEWNESEGAIKRTYSGF 586 (1134)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1134)
.|.|.+-+....+....+...
T Consensus 237 ---~G~i~~vs~D~~~~lce~~~~ 257 (829)
T KOG2280|consen 237 ---TGKIWVVSIDLSQILCEFNCT 257 (829)
T ss_pred ---CCcEEEEecchhhhhhccCCC
Confidence 677888887777766666543
No 451
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.82 E-value=13 Score=45.12 Aligned_cols=76 Identities=9% Similarity=0.069 Sum_probs=54.3
Q ss_pred cCceEEEECCCCcEEEEEECCeEEEEeC--CCc---------c-e--eccCC-----CCCCCCCeEEEEEccC---CCEE
Q 001160 975 VGETKVQFHNDQTHLLVVHESQISVYDS--KLE---------C-S--RSWSP-----KDALPAPISSAIYSCD---GLLV 1032 (1134)
Q Consensus 975 ~~v~~~~fspdg~~l~~~~d~~v~vwd~--~~~---------~-~--~~~~~-----~~~h~~~v~~v~~s~d---g~~l 1032 (1134)
..|..+.++|+|++||..+...|.|..+ ... . + +.+.. ...+...|..+.|.|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 4689999999999999977777777665 110 0 0 11110 1123568999999986 5788
Q ss_pred EEEecCCcEEEEeCCCcc
Q 001160 1033 YAGFCDGAIGVFDAETLR 1050 (1134)
Q Consensus 1033 ~~~~~dg~I~vwd~~~~~ 1050 (1134)
++-+.|+++++||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 888899999999997643
No 452
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.79 E-value=6.5 Score=42.87 Aligned_cols=143 Identities=9% Similarity=0.082 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc--eEEEEe-cCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCccccc
Q 001160 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD--EVKTKL-KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 960 (1134)
Q Consensus 884 i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~--~~~~~l-~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~ 960 (1134)
-+.+-|.. .++.| .+...|.+.=|.+... ...-.+ ....++|.++.||+|.+.||.--.|.+|.+.+....+...
T Consensus 25 sngvFfDD-aNkql-favrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 25 SNGVFFDD-ANKQL-FAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ccceeecc-CcceE-EEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 34555654 33333 3445566666665432 112222 2345689999999999999999999999999985544321
Q ss_pred ceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeC--CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEe
Q 001160 961 SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1036 (1134)
Q Consensus 961 ~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~--~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~ 1036 (1134)
.. ...+......+...+|+.. .-+|...+..+.+|.. ..+.++.. ..|...|.-..|+++-+.++.++
T Consensus 103 ~~----~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlV---ks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 103 EY----TQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLV---KSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HH----HHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhh---hhcccCccEEEEccccceEeeec
Confidence 11 1112222245888999877 6677777778888877 33444333 34577888888999887644433
No 453
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.56 E-value=12 Score=41.23 Aligned_cols=152 Identities=14% Similarity=0.150 Sum_probs=86.4
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCc------EEEEEcCC--c-----eEE--EEecCccc--------ceEEEEEecCCC
Q 001160 881 PPAATFLAFHPQDNNIIAIGMEDSS------VQIYNVRV--D-----EVK--TKLKGHQN--------RITGLAFSPTLN 937 (1134)
Q Consensus 881 ~~~i~~l~~s~~~~~~lasg~~dg~------i~iwd~~~--~-----~~~--~~l~~h~~--------~i~~l~~s~d~~ 937 (1134)
-+.+..+.+.++++. +++.+++|. ++.+++.. + +.. ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 356788999873454 445667777 66665543 1 111 11221111 234788888999
Q ss_pred EEEEEcCC------CcEEEEeCCCcccccceeeecCC-------CCCCCCcCceEEEECCCCcEEEEE------ECC--e
Q 001160 938 ALVSSGAD------AQLCMWSIDKWEKLKSRFIQAPA-------GRQSPLVGETKVQFHNDQTHLLVV------HES--Q 996 (1134)
Q Consensus 938 ~l~s~~~D------~~i~iWd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~fspdg~~l~~~------~d~--~ 996 (1134)
++++.-.+ ..|+-++.. |+......+.... .......+.-.++++|||+.|.+. .|+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88887777 778888876 5543322121111 112233677899999999955542 122 1
Q ss_pred -------EEEE--eCC--CcceeccCCCCC------CCCCeEEEEEccCCCEEEE
Q 001160 997 -------ISVY--DSK--LECSRSWSPKDA------LPAPISSAIYSCDGLLVYA 1034 (1134)
Q Consensus 997 -------v~vw--d~~--~~~~~~~~~~~~------h~~~v~~v~~s~dg~~l~~ 1034 (1134)
++++ |.. +.....+..... ....|+.+.+-+|+++|+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 4454 442 222333221111 3568899999999997765
No 454
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.46 E-value=9 Score=42.45 Aligned_cols=150 Identities=9% Similarity=0.074 Sum_probs=92.4
Q ss_pred EEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccC------CccEEEEEecCCeEEEEEccCCC
Q 001160 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE------SIQFIFSTAIDGKIKAWLYDYLG 532 (1134)
Q Consensus 459 l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~------~~~~l~s~~~d~~i~~wd~~~~~ 532 (1134)
+-...+...+++..|+....++-.|++.|+.+-.+.-|..- -+.+.|.. +.+.|+ |-.+..|.-.|.+..+
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccC
Confidence 33444444446667888888999999999999998877765 34555532 113444 4455556556666544
Q ss_pred ceeEecCCCC-----cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe
Q 001160 533 SRVDYDAPGN-----WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (1134)
Q Consensus 533 ~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1134)
.......... ...+..-. ..-++++++. .|-|++||.-.-.....+++..+ .|..+..+.+|+++++.+
T Consensus 549 NKi~v~esKdY~tKn~Fss~~tT-esGyIa~as~----kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 549 NKIKVVESKDYKTKNKFSSGMTT-ESGYIAAASR----KGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILATC 622 (776)
T ss_pred Cceeeeeehhccccccccccccc-cCceEEEecC----CCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEEee
Confidence 3222221111 22233222 3457888775 55599999665555555666555 788899999999988876
Q ss_pred CCCeEEEEECC
Q 001160 608 DEFQIKFWDMD 618 (1134)
Q Consensus 608 ~dg~i~iwd~~ 618 (1134)
. ..+.+-|+.
T Consensus 623 k-~yllL~d~~ 632 (776)
T COG5167 623 K-NYLLLTDVP 632 (776)
T ss_pred c-ceEEEEecc
Confidence 4 356666653
No 455
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=90.25 E-value=30 Score=37.44 Aligned_cols=208 Identities=10% Similarity=-0.036 Sum_probs=103.0
Q ss_pred CCceEEEEeccCCCEEEEEeCCe--EEEEECCCCeE---------------EEEecCCCCceEEEEEcCCCCcEEEEEeC
Q 001160 840 EESAACIALSKNDSYVMSASGGK--VSLFNMMTFKV---------------MTMFMSPPPAATFLAFHPQDNNIIAIGME 902 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~sdg~--i~vwd~~~~~~---------------~~~~~~~~~~i~~l~~s~~~~~~lasg~~ 902 (1134)
...|+++.+.+..+.|++-+|.. ++++++..... ....-++......++.........+.+..
T Consensus 42 ~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~ 121 (302)
T smart00036 42 RRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVAL 121 (302)
T ss_pred cCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEc
Confidence 67899999999999888888665 99999854321 01122344434444444311223334445
Q ss_pred CCcEEEEEcCCc----eEEEEe---c-CcccceEEEEEecC--CCEEEEEcCCCcEEEEeCCC--cccccceeeecCCCC
Q 001160 903 DSSVQIYNVRVD----EVKTKL---K-GHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDK--WEKLKSRFIQAPAGR 970 (1134)
Q Consensus 903 dg~i~iwd~~~~----~~~~~l---~-~h~~~i~~l~~s~d--~~~l~s~~~D~~i~iWd~~~--~~~~~~~~~~~~~~~ 970 (1134)
..+|.++..... ...+.+ . .-..++..+..+++ ...+..|+..+...++++.. ...... .+......
T Consensus 122 ~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~-sl~~~~~~ 200 (302)
T smart00036 122 QSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDL-SLPFLSEE 200 (302)
T ss_pred CCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccc-cccccccc
Confidence 567777654321 111110 0 01123334433433 34555565432344555533 110000 00000000
Q ss_pred CCCCcCceEEEECCCCcEEEEEECCeEEEEeCCC-cceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCc
Q 001160 971 QSPLVGETKVQFHNDQTHLLVVHESQISVYDSKL-ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1049 (1134)
Q Consensus 971 ~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~-~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~ 1049 (1134)
. ...+.++..-+++ .++.+.+....+-|..| ...+..... -.....++++.. .+|+.-+ +..|.|+++.++
T Consensus 201 ~--~~~p~~i~~l~~~-e~Llc~~~~~v~Vn~~G~~~~r~~~l~--w~~~p~~~~~~~--pyll~~~-~~~ievr~l~~~ 272 (302)
T smart00036 201 T--SLKPISVVQVPRD-EFLLCYDEFGVFVNLYGKRRSRNPILH--WEFMPESFAYHS--PYLLAFH-DNGIEIRSIKTG 272 (302)
T ss_pred c--ccCceEEEEECCC-eEEEEECcEEEEEeCCCCccccceEEE--cCCcccEEEEEC--CEEEEEc-CCcEEEEECCCC
Confidence 0 0023344444444 44555566666667766 332211110 034556777663 4565554 566999999999
Q ss_pred ceeeecC
Q 001160 1050 RFRCRIG 1056 (1134)
Q Consensus 1050 ~~~~~~~ 1056 (1134)
+.+.++.
T Consensus 273 ~l~q~i~ 279 (302)
T smart00036 273 ELLQELA 279 (302)
T ss_pred ceEEEEe
Confidence 9888775
No 456
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=90.05 E-value=33 Score=38.69 Aligned_cols=40 Identities=8% Similarity=0.053 Sum_probs=19.5
Q ss_pred EEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCC
Q 001160 612 IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1134)
Q Consensus 612 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 653 (1134)
+.+||.++.+....-..+.. .-...+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQG--LAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCC--ccceEEEEeCCEEEEEcCCC
Confidence 45788877553322111111 11223344457777777753
No 457
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.99 E-value=18 Score=43.24 Aligned_cols=116 Identities=11% Similarity=0.091 Sum_probs=76.8
Q ss_pred CeEEEEEcC--CCCEEEEEeCCCeEEEEEcCC-------C----------CccceeeEEecccCCeeEEEEe--cCCCcE
Q 001160 410 SVNRCVWGP--DGLMLGVAFSKHIVHLYTYNP-------T----------GELRQHLEIDAHVGGVNDIAFA--HPNKQL 468 (1134)
Q Consensus 410 ~V~~i~~sp--dg~~las~~~dg~i~iwd~~~-------~----------~~~~~~~~~~~h~~~v~~l~~s--~d~~~~ 468 (1134)
.|+.|.... +...|+.|..||.|.+|.+++ . ..+.+...+. -...++.+++. ...+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r-- 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR-- 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce--
Confidence 466665544 566899999999999997631 0 0111222232 34478999998 5555
Q ss_pred EEEEEcCCCcEEEEECCCC--eeeE-EecCCCCCeEEEEeeccCC---cc-EEEEEecCCeEEEEEc
Q 001160 469 CIVTCGDDKMIKVWDVVAG--RKQY-TFEGHEAPVYSVCPHHKES---IQ-FIFSTAIDGKIKAWLY 528 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~--~~~~-~~~~h~~~v~~i~~~~~~~---~~-~l~s~~~d~~i~~wd~ 528 (1134)
+||.++....|.||-.... +... .-..|...|.+|+|.++.. |. .+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888888888765432 1111 1112667899999987652 22 7888999999999887
No 458
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.86 E-value=1.2 Score=47.99 Aligned_cols=153 Identities=14% Similarity=0.099 Sum_probs=96.3
Q ss_pred CCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEE-ec-CCCC----ceE-EEEEcCCCCcEEEEEeCCCcEEEE-Ec
Q 001160 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTM-FM-SPPP----AAT-FLAFHPQDNNIIAIGMEDSSVQIY-NV 911 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~-~~-~~~~----~i~-~l~~s~~~~~~lasg~~dg~i~iw-d~ 911 (1134)
...+..+-+.|||+.+.+-+..++.|+++.+...... +- ...+ .|+ ++..-. ++.-|.+++.||-|.-| |+
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeeee
Confidence 5678889999999999988888999999876543221 11 1111 233 233334 67777889999999888 44
Q ss_pred CCc-e----EEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCC
Q 001160 912 RVD-E----VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 986 (1134)
Q Consensus 912 ~~~-~----~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg 986 (1134)
..+ + .++.++-...++..+.--.+.+-+++-+..|++.++.....+.+- ..... ..+..+++||.+
T Consensus 299 r~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL---~~~~~------~~~~~~~~Sp~~ 369 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL---FERAY------QAPQLVAMSPNQ 369 (733)
T ss_pred ecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee---hhhhh------cCcceeeeCccc
Confidence 332 1 122222222334444333334567777888888877655433211 11111 245789999999
Q ss_pred cEEEEEECCeEEEEeC
Q 001160 987 THLLVVHESQISVYDS 1002 (1134)
Q Consensus 987 ~~l~~~~d~~v~vwd~ 1002 (1134)
.+|++-..+.++++.+
T Consensus 370 ~~Ll~e~~gki~~~~l 385 (733)
T COG4590 370 AYLLSEDQGKIRLAQL 385 (733)
T ss_pred chheeecCCceEEEEe
Confidence 9999988899999987
No 459
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.78 E-value=1.3 Score=30.45 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=23.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCC--CcEEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNV--GDISLW 374 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~d--g~i~iw 374 (1134)
....-.+.+|||||++++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 456788999999999888888877 777766
No 460
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=89.77 E-value=41 Score=43.78 Aligned_cols=149 Identities=13% Similarity=0.174 Sum_probs=87.4
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
|-..++.|.-+|+|+++= =.|+.++.||..... |... -......++.++-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~lR---lHd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLR---LHDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCeEE---eecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceEe
Confidence 445566777777877432 247788888877553 3210 012334566666666777666
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC------ee--eEEecCC
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG------RK--QYTFEGH 496 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~------~~--~~~~~~h 496 (1134)
=+.+ .+-|+..+.... ..-..|.+...+++|.- .+.++.+...+.+|++... +. .-.+.+-
T Consensus 419 -k~~~---~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 -KDDD---TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred -cCCC---ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 2122 134555443211 12235777788899983 4677777778899998753 11 1223333
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEccC
Q 001160 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 530 (1134)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~ 530 (1134)
.....+|.+++ ..|+++..+|.++.=++..
T Consensus 488 ~a~A~~VgLs~----drLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGLSN----DRLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheeecC----CeEEEEeCCCCEEeccccc
Confidence 34566666644 4688888899888776654
No 461
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.63 E-value=33 Score=36.87 Aligned_cols=283 Identities=10% Similarity=0.049 Sum_probs=126.4
Q ss_pred ecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCE
Q 001160 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 343 l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
+.-...+..|+|..+.. -+++|.. |. |+....|..- |....... ...-.-...+|.|..+ ..
T Consensus 13 l~t~~~l~dV~F~d~~~-G~~VG~~-g~--il~T~DGG~t-------W~~~~~~~------~~~~~~~l~~I~f~~~-~g 74 (302)
T PF14870_consen 13 LPTDKPLLDVAFVDPNH-GWAVGAY-GT--ILKTTDGGKT-------WQPVSLDL------DNPFDYHLNSISFDGN-EG 74 (302)
T ss_dssp -S-SS-EEEEEESSSS--EEEEETT-TE--EEEESSTTSS--------EE-----------S-----EEEEEEEETT-EE
T ss_pred cCCCCceEEEEEecCCE-EEEEecC-CE--EEEECCCCcc-------ccccccCC------CccceeeEEEEEecCC-ce
Confidence 33456899999995554 5666753 43 4555444322 11100000 0001223667777643 34
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee-eEEecCCCCCeE
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVY 501 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~-~~~~~~h~~~v~ 501 (1134)
+++ +..+ +.+...+.|+.......-..-.+....+....++. .++.+ ..|.|+.=. ..|+. ......-.+.+.
T Consensus 75 ~iv-G~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~--~~l~~-~~G~iy~T~-DgG~tW~~~~~~~~gs~~ 148 (302)
T PF14870_consen 75 WIV-GEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGS--AELAG-DRGAIYRTT-DGGKTWQAVVSETSGSIN 148 (302)
T ss_dssp EEE-EETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTE--EEEEE-TT--EEEES-STTSSEEEEE-S----EE
T ss_pred EEE-cCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCc--EEEEc-CCCcEEEeC-CCCCCeeEcccCCcceeE
Confidence 444 4455 55555666665543211011122333444444443 33433 345443322 33332 222334456677
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEe-CCCCeeE
Q 001160 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN-ESEGAIK 580 (1134)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd-~~~~~~~ 580 (1134)
.+..+ .+|.++++++.-....-||--...-...-......|.++.|+|++...+.+- .+.|+.=+ ....+.-
T Consensus 149 ~~~r~--~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~-----Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 149 DITRS--SDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLAR-----GGQIQFSDDPDDGETW 221 (302)
T ss_dssp EEEE---TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEET-----TTEEEEEE-TTEEEEE
T ss_pred eEEEC--CCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeC-----CcEEEEccCCCCcccc
Confidence 76654 4557777777666677886543333333444567999999999988877652 55566665 2222211
Q ss_pred EE--ecC-ccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC-CCCCCcceEEEccCCCEEEEEeCCCcE
Q 001160 581 RT--YSG-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1134)
Q Consensus 581 ~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~dg~i 656 (1134)
.. ... ...-.+..++|.+++...++|+. |.+ +...+.|+.-...... .-....+.+.|.++.+-++ .+.+|.|
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~l 298 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVL 298 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEE
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEE
Confidence 11 111 11214778899988777776654 433 4455667666555432 1123578888887655555 4567776
Q ss_pred EEE
Q 001160 657 KIL 659 (1134)
Q Consensus 657 ~iw 659 (1134)
.-|
T Consensus 299 l~~ 301 (302)
T PF14870_consen 299 LRY 301 (302)
T ss_dssp EEE
T ss_pred EEe
Confidence 544
No 462
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.47 E-value=22 Score=44.73 Aligned_cols=147 Identities=13% Similarity=0.205 Sum_probs=91.9
Q ss_pred eCCCcEEEEEcCCceEEEEecCcccceEEEEEe--------cCCCEEEEEcCCCcEEEEeCCCcccccce--eeecCCCC
Q 001160 901 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS--------PTLNALVSSGADAQLCMWSIDKWEKLKSR--FIQAPAGR 970 (1134)
Q Consensus 901 ~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s--------~d~~~l~s~~~D~~i~iWd~~~~~~~~~~--~~~~~~~~ 970 (1134)
+-|..+.+|++.++.....+.+-+..|..|..- |.=++|...+.--.|.++-+.-.+..... ...... -
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~-i 174 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK-I 174 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee-e
Confidence 458899999999987777777777777776642 22234444444455777765433321111 111100 0
Q ss_pred CCCCcCceEEEECCCCcEEEEEECCeEE--EEeC-C---Cc-cee-------------ccCCC-CCCCCCeEEEEEccCC
Q 001160 971 QSPLVGETKVQFHNDQTHLLVVHESQIS--VYDS-K---LE-CSR-------------SWSPK-DALPAPISSAIYSCDG 1029 (1134)
Q Consensus 971 ~~~~~~v~~~~fspdg~~l~~~~d~~v~--vwd~-~---~~-~~~-------------~~~~~-~~h~~~v~~v~~s~dg 1029 (1134)
......|.++....+|+.+.+|.||.|. +|.. + ++ |-+ .+... ..+..+|..++....-
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 0011468899989999999999998543 2222 1 11 110 01111 2457799999998888
Q ss_pred CEEEEEecCCcEEEEeCCC
Q 001160 1030 LLVYAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 1030 ~~l~~~~~dg~I~vwd~~~ 1048 (1134)
..|.+-++.|+|.+|++..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8899999999999999986
No 463
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=89.35 E-value=34 Score=36.69 Aligned_cols=167 Identities=11% Similarity=0.089 Sum_probs=90.3
Q ss_pred cEEEEECCCCeeeEEecC------CCCCeEEEEeeccCC----ccEEEEEecCCeEEEEEccCCCceeEecCC-------
Q 001160 478 MIKVWDVVAGRKQYTFEG------HEAPVYSVCPHHKES----IQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------- 540 (1134)
Q Consensus 478 ~i~iwd~~~~~~~~~~~~------h~~~v~~i~~~~~~~----~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------- 540 (1134)
.|.+||+.+++.++++.- ..+.+..+.+..... +...++-+..+.|.++|+.+++....+...
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 577889999888776542 245677777765332 233444455578999999876654433221
Q ss_pred ------------CCcEEEEEECC---CCCEEEEEeeCCCCCCcEEEEeCCC-----Ce---------eEEEecCccCcce
Q 001160 541 ------------GNWCTMMAYSA---DGTRLFSCGTSKEGESHLVEWNESE-----GA---------IKRTYSGFRKRSL 591 (1134)
Q Consensus 541 ------------~~~v~~~~~s~---~~~~l~~~~~~~~~~~~i~~wd~~~-----~~---------~~~~~~~~~~~~v 591 (1134)
...+..++.+| ++++|+.....+ -.+|.+.+ .. .+..+ +......
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-----~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s 188 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-----RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQS 188 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-----CcEEEEEHHHhhCccccccccccccceec-cccCCCC
Confidence 11255566655 666666554211 22333221 10 11111 1111245
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCC---eeEEEE-eCCCCCCCcceEEEcc--CCCEEEEE
Q 001160 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNM---NMLTTV-DADGGLPASPRLRFNK--EGSLLAVT 650 (1134)
Q Consensus 592 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~-~~~~~~~~v~~~~~s~--d~~~l~~~ 650 (1134)
..++++++|..+++--..+.|..|+..+. +....+ ........+..+.+.+ +|.+.+..
T Consensus 189 ~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 189 DGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp CEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 56889999988888889999999998861 122222 2222234567777877 66554443
No 464
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.27 E-value=18 Score=39.82 Aligned_cols=113 Identities=14% Similarity=0.173 Sum_probs=67.4
Q ss_pred cceEEEEEecCCCEEEEEcCCCc------EEEEeCCCc--c-----cccceeeecCCCCCC--CCcCceEEEECCCCcEE
Q 001160 925 NRITGLAFSPTLNALVSSGADAQ------LCMWSIDKW--E-----KLKSRFIQAPAGRQS--PLVGETKVQFHNDQTHL 989 (1134)
Q Consensus 925 ~~i~~l~~s~d~~~l~s~~~D~~------i~iWd~~~~--~-----~~~~~~~~~~~~~~~--~~~~v~~~~fspdg~~l 989 (1134)
+.+.+|.+.+++..+++.+.++. +...++... . ......+....+..- .....-.+++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 45778888866666677777776 555555431 1 011111222222110 01234578888888888
Q ss_pred EEE-EC------CeEEEEeCCCcceeccCCC------------CCCCCCeEEEEEccCCCEEEEEec
Q 001160 990 LVV-HE------SQISVYDSKLECSRSWSPK------------DALPAPISSAIYSCDGLLVYAGFC 1037 (1134)
Q Consensus 990 ~~~-~d------~~v~vwd~~~~~~~~~~~~------------~~h~~~v~~v~~s~dg~~l~~~~~ 1037 (1134)
++. .+ ..|..++..+.....+... ...+....+|+++|||+.|+++.+
T Consensus 100 is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 885 45 6788888766554444211 123678899999999997776554
No 465
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.78 E-value=42 Score=37.06 Aligned_cols=196 Identities=12% Similarity=0.108 Sum_probs=100.7
Q ss_pred CCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEe----cCCCE--EEEEc-CC---CcEEEEeCCCcccccce
Q 001160 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS----PTLNA--LVSSG-AD---AQLCMWSIDKWEKLKSR 962 (1134)
Q Consensus 893 ~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s----~d~~~--l~s~~-~D---~~i~iWd~~~~~~~~~~ 962 (1134)
...+|+....++-+.+||+. |+.+..+.. +++..+..- -+|+. |+.++ ++ .+|++|.+...... ..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~ 142 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LT 142 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ce
Confidence 45577777788899999986 555566542 333333321 13432 34443 32 46999988642110 00
Q ss_pred eeecCCCC-CCCCcCceEEEE--CC-CCcEEEE--EECCeEEEEeC----CC----cceeccCCCCCCCCCeEEEEEccC
Q 001160 963 FIQAPAGR-QSPLVGETKVQF--HN-DQTHLLV--VHESQISVYDS----KL----ECSRSWSPKDALPAPISSAIYSCD 1028 (1134)
Q Consensus 963 ~~~~~~~~-~~~~~~v~~~~f--sp-dg~~l~~--~~d~~v~vwd~----~~----~~~~~~~~~~~h~~~v~~v~~s~d 1028 (1134)
.+...... ......+..+|+ +| +|.+.+. ..+|.+..|.+ ++ +.++.+.. ...+..+.....
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~----~sQ~EGCVVDDe 218 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV----GSQPEGCVVDDE 218 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-----SS-EEEEEEETT
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC----CCcceEEEEecc
Confidence 11110000 011134566666 43 5665555 45788887777 22 23444433 457888888888
Q ss_pred CCEEEEEecCCcEEEEeCCC-----cceeeecCCcccccccccCCCCccEEEeecCC-CCCEEEEEeCCCcEEEEecCCC
Q 001160 1029 GLLVYAGFCDGAIGVFDAET-----LRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPS-EPNQIALGMSDGAVHVVEPSDA 1102 (1134)
Q Consensus 1029 g~~l~~~~~dg~I~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~l~s~~~Dg~v~vW~~~~~ 1102 (1134)
..+|+.+-+|.-|--|+.+- ++.+...... ....++.-+++...++ .|.+|||.=.+++..||+...+
T Consensus 219 ~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~------~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 219 TGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGD------GLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSS------SB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred cCCEEEecCccEEEEEecCCCCCCcceeeeccccc------ccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 88999998887666666651 2223222211 1233455566665542 3445555556789999998754
No 466
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.55 E-value=12 Score=44.74 Aligned_cols=174 Identities=12% Similarity=0.098 Sum_probs=91.8
Q ss_pred CCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEE
Q 001160 852 DSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLA 931 (1134)
Q Consensus 852 g~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~ 931 (1134)
+.++.++..+.|.||+.+...... ...++..+...| ... ...|+.+..|- ..|. |..|.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p----~~~p~~~~~t~p---~~~--~~~D~~~s~~p----------~PHt--IN~i~ 107 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLP----SRKPCLRFDTKP---EFT--STPDRLISTWP----------FPHT--INFIK 107 (717)
T ss_pred CCEEEEEECCEEEEEecCCccccc----ccccccccccCc---ccc--ccccccccCCC----------CCce--eeEEE
Confidence 778888889999999986532211 111122222222 111 22344333332 1121 22222
Q ss_pred E--ecCCCEEEEEcCCCcEEEEeCCCcc--------cc---cceeeecCCCCCCCCcCceEEEEC--CCCcEEEEEEC-C
Q 001160 932 F--SPTLNALVSSGADAQLCMWSIDKWE--------KL---KSRFIQAPAGRQSPLVGETKVQFH--NDQTHLLVVHE-S 995 (1134)
Q Consensus 932 ~--s~d~~~l~s~~~D~~i~iWd~~~~~--------~~---~~~~~~~~~~~~~~~~~v~~~~fs--pdg~~l~~~~d-~ 995 (1134)
. --+...|+.|..||.|.+|.+++-- .. ..+....+.-+........+++++ ...+++|++++ .
T Consensus 108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~ 187 (717)
T PF08728_consen 108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ 187 (717)
T ss_pred ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence 2 2345677778888888888663210 00 000000000001111356788888 77788888654 5
Q ss_pred eEEEEeCCCc-ceeccCCCCCCCCCeEEEEEccCC---C---EEEEEecCCcEEEEeC
Q 001160 996 QISVYDSKLE-CSRSWSPKDALPAPISSAIYSCDG---L---LVYAGFCDGAIGVFDA 1046 (1134)
Q Consensus 996 ~v~vwd~~~~-~~~~~~~~~~h~~~v~~v~~s~dg---~---~l~~~~~dg~I~vwd~ 1046 (1134)
.|.||-.... ..........|...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 6777665221 111111122356789999997643 2 7888999999999888
No 467
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.40 E-value=49 Score=37.26 Aligned_cols=197 Identities=12% Similarity=0.031 Sum_probs=104.4
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCC-CeE
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA-PVY 501 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~-~v~ 501 (1134)
+..+..+|.|.-.|..++..+-..... +....+..-.+..+|+ ++.++.++.++..|..+|+.+........ .+.
T Consensus 71 v~~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 71 VYVGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred EEEecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 334467777777777776643211111 0112233333334775 77888899999999889998877765541 111
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCC---cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe
Q 001160 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN---WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1134)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1134)
.-.+. .+ ..+..++.++.+...|..++........... .+..-....++ .++.+..+ . ++.+.-.|..+|.
T Consensus 147 ~~~v~--~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~-~-~~~~~a~~~~~G~ 220 (370)
T COG1520 147 SPPVV--GD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDG-Y-DGILYALNAEDGT 220 (370)
T ss_pred cCcEE--cC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCC-C-cceEEEEEccCCc
Confidence 11111 11 3444455778888888777777665443321 11111112223 33333221 1 3457777887887
Q ss_pred eEEEecCccCcc---eEEEEEeCC-----CCEEEEEeCCCeEEEEECCCCeeEEEEeCC
Q 001160 579 IKRTYSGFRKRS---LGVVQFDTT-----RNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1134)
Q Consensus 579 ~~~~~~~~~~~~---v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1134)
.....+...... +........ +..++.++.++.+...|..+++.+-.....
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 766643221100 100001111 122355667788999999999988887653
No 468
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=88.39 E-value=8.1 Score=44.63 Aligned_cols=88 Identities=9% Similarity=0.169 Sum_probs=55.4
Q ss_pred EECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCC
Q 001160 866 FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD 945 (1134)
Q Consensus 866 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D 945 (1134)
.|+-.|..... ..|.+.|.-+.... .+..|..-...-.+.++|+.+.+..-.+. -.+-+.|-|-...++.-+.|
T Consensus 323 vdli~g~~~~~-inh~~~vdwielne-~~~kllfrdkk~kl~l~di~s~qksmiln----fcsymqwvp~sdvivaqn~d 396 (1636)
T KOG3616|consen 323 VDLIGGQNEGF-INHEGAVDWIELNE-RAHKLLFRDKKLKLHLVDIESCQKSMILN----FCSYMQWVPGSDVIVAQNGD 396 (1636)
T ss_pred eecccCccccc-ccccccccceeccc-hhhhhhcccccceeEEEEcccchHHHHHH----HhhhheeccCcceEEecCCC
Confidence 34444444333 34888888888877 55555555555678888987654221111 13457899988888888888
Q ss_pred CcEEEEeCCCcccc
Q 001160 946 AQLCMWSIDKWEKL 959 (1134)
Q Consensus 946 ~~i~iWd~~~~~~~ 959 (1134)
+....|+++..+.+
T Consensus 397 nl~iwyn~d~peqv 410 (1636)
T KOG3616|consen 397 NLCIWYNIDAPEQV 410 (1636)
T ss_pred ceEEEecCCcchhh
Confidence 75555577665543
No 469
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.08 E-value=45 Score=38.06 Aligned_cols=111 Identities=18% Similarity=0.194 Sum_probs=61.5
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce--EEEEec-----CcccceEEEEEecCC------CEEEEEc----
Q 001160 881 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE--VKTKLK-----GHQNRITGLAFSPTL------NALVSSG---- 943 (1134)
Q Consensus 881 ~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~--~~~~l~-----~h~~~i~~l~~s~d~------~~l~s~~---- 943 (1134)
-.....|+|.| |+++|++--..|.|++++-.++. .+..+. .-.+....|+++||- .+|....
T Consensus 29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 44668899999 88888765546999999865543 222121 124668899999884 2333221
Q ss_pred ------CCCcEEEEeCCCc--cccc-ceeeecCCCCCCCCcCceEEEECCCCcEEEEEEC
Q 001160 944 ------ADAQLCMWSIDKW--EKLK-SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE 994 (1134)
Q Consensus 944 ------~D~~i~iWd~~~~--~~~~-~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d 994 (1134)
....|.-|.+... .... ..++....... ...-..++|.|||.++++..|
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~--~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGN--DHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCC--CcCCceEEECCCCcEEEEECC
Confidence 1223444554321 1111 11222221100 123468899999998777444
No 470
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.75 E-value=29 Score=34.02 Aligned_cols=173 Identities=15% Similarity=0.110 Sum_probs=92.3
Q ss_pred EEEEEcC--CCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEE
Q 001160 469 CIVTCGD--DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTM 546 (1134)
Q Consensus 469 ~l~sg~~--d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 546 (1134)
++.+.+. ...|++||+.+|+.+.+-+-....+..=-....+| .+-.-.-.+|.-..+|.++.++.-.+.-.+. =..
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd-~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge-GWg 135 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD-YFYQLTWKEGVAFKYDADTLEELGRFSYEGE-GWG 135 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccc-eEEEEEeccceeEEEChHHhhhhcccccCCc-cee
Confidence 5555554 34799999999998765432211221111111122 2333345678888899888777655443322 122
Q ss_pred EEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE----ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCee
Q 001160 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT----YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1134)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1134)
...|++.|+.+ |+..+++.-|.++.....+ +.+..-..++-+.|- +|...+-.=.+..|...+.++|+.
T Consensus 136 --Lt~d~~~Lims----dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 136 --LTSDDKNLIMS----DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred --eecCCcceEee----CCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 33556666654 3466788888876544333 333222223334443 343333333444566667777777
Q ss_pred EEEEeCCC----------CCCCcceEEEccCCC-EEEEE
Q 001160 623 LTTVDADG----------GLPASPRLRFNKEGS-LLAVT 650 (1134)
Q Consensus 623 ~~~~~~~~----------~~~~v~~~~~s~d~~-~l~~~ 650 (1134)
+..++..+ +....+.+++.|++. ++++|
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 66654321 122457788888774 44444
No 471
>PRK13684 Ycf48-like protein; Provisional
Probab=87.52 E-value=50 Score=36.43 Aligned_cols=278 Identities=10% Similarity=0.019 Sum_probs=130.6
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
...+.+|+|..+.. .+++|. +| .||...++..- |...... +......+.++.|.++ ..+++
T Consensus 45 ~~~l~~v~F~d~~~-g~avG~-~G--~il~T~DgG~t-------W~~~~~~-------~~~~~~~l~~v~~~~~-~~~~~ 105 (334)
T PRK13684 45 EANLLDIAFTDPNH-GWLVGS-NR--TLLETNDGGET-------WEERSLD-------LPEENFRLISISFKGD-EGWIV 105 (334)
T ss_pred CCceEEEEEeCCCc-EEEEEC-CC--EEEEEcCCCCC-------ceECccC-------CcccccceeeeEEcCC-cEEEe
Confidence 45788999986554 566665 34 34444333221 1110000 1112234777888654 34444
Q ss_pred EeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEec-CCCCCeEEEE
Q 001160 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSVC 504 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~i~ 504 (1134)
+..+.|.. ..+.|+.......-.........+....++. .++. +..+.|..=+ ..|+.-..+. .-.+.+.++.
T Consensus 106 -G~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~-g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~ 179 (334)
T PRK13684 106 -GQPSLLLH-TTDGGKNWTRIPLSEKLPGSPYLITALGPGT--AEMA-TNVGAIYRTT-DGGKNWEALVEDAAGVVRNLR 179 (334)
T ss_pred -CCCceEEE-ECCCCCCCeEccCCcCCCCCceEEEEECCCc--ceee-eccceEEEEC-CCCCCceeCcCCCcceEEEEE
Confidence 34453322 3333444332211000111112222222222 2333 3344443222 2333322222 2245677888
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCCCc--eeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE
Q 001160 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1134)
+.++ +.+ +..+..|.+..= .+.+.. ..........++++.+.++++.++++. .+.+.+=....|..-..
T Consensus 180 ~~~~--g~~-v~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-----~G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 180 RSPD--GKY-VAVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-----GGQIRFNDPDDLESWSK 250 (334)
T ss_pred ECCC--CeE-EEEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-----CCEEEEccCCCCCcccc
Confidence 7654 344 455555655421 122222 222233456789999999998877763 34443322333332221
Q ss_pred ecCc---cCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC-CCCCCcceEEEccCCCEEEEEeCCCcEEE
Q 001160 583 YSGF---RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (1134)
Q Consensus 583 ~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~dg~i~i 658 (1134)
.... ....+..+.+.+++..+ .++.+|.+. ...+.++........ .-....+.+.|..+++.++ .+..|.|.-
T Consensus 251 ~~~~~~~~~~~l~~v~~~~~~~~~-~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~ 327 (334)
T PRK13684 251 PIIPEITNGYGYLDLAYRTPGEIW-AGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLR 327 (334)
T ss_pred ccCCccccccceeeEEEcCCCCEE-EEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEE
Confidence 1111 11246778888877654 455677655 345555554444321 1112466777777666655 566778777
Q ss_pred EE
Q 001160 659 LA 660 (1134)
Q Consensus 659 w~ 660 (1134)
|+
T Consensus 328 ~~ 329 (334)
T PRK13684 328 YV 329 (334)
T ss_pred ec
Confidence 65
No 472
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.28 E-value=2.7 Score=42.84 Aligned_cols=78 Identities=13% Similarity=0.188 Sum_probs=54.7
Q ss_pred EecCCCEEEEEcCCCcEEEEeCCCcccccce-ee-ecCCCC----CCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCc
Q 001160 932 FSPTLNALVSSGADAQLCMWSIDKWEKLKSR-FI-QAPAGR----QSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1005 (1134)
Q Consensus 932 ~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~-~~-~~~~~~----~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~ 1005 (1134)
+..++.+|+....+|.+++||+.+++..-.. .+ ...... ......|..+.++.+|.-+++-++|....|+.+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4457889999999999999999998754322 00 001100 01225688899999999998877888999998666
Q ss_pred ceec
Q 001160 1006 CSRS 1009 (1134)
Q Consensus 1006 ~~~~ 1009 (1134)
+...
T Consensus 98 ~W~~ 101 (219)
T PF07569_consen 98 CWIR 101 (219)
T ss_pred eeEE
Confidence 5443
No 473
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=87.17 E-value=26 Score=41.26 Aligned_cols=129 Identities=9% Similarity=0.103 Sum_probs=71.9
Q ss_pred eEEEECCCCcEEEE-EECC-----eEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcce
Q 001160 978 TKVQFHNDQTHLLV-VHES-----QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF 1051 (1134)
Q Consensus 978 ~~~~fspdg~~l~~-~~d~-----~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~ 1051 (1134)
..+.|-|.|..+++ +.|+ .|..+..+|-....+....+-...+..++|.-....++.+ ..+.|++|-..+..-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhW 328 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHW 328 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEE
Confidence 45899999999999 5443 4777776554443332222224556677777666655544 566899998765432
Q ss_pred eeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCccccCCCCCCCCCCCC
Q 001160 1052 RCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLP 1118 (1134)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~~~~~~~~~ 1118 (1134)
-- ....+.|. +. -+.|+|...+.|.-.+.. .|-.-.++....+-.-..|+|+|-.+
T Consensus 329 YL--K~e~~ip~------~s--~vkwhpe~~nTl~f~d~~-~I~~V~f~~k~~~~~s~~p~d~g~~~ 384 (1243)
T COG5290 329 YL--KVERQIPG------IS--YVKWHPEEKNTLLFRDGE-RILRVFFSEKKTHHGSEYPFDNGTSY 384 (1243)
T ss_pred EE--EEeecCCC------cc--eeeeccccCcEEEEecCC-eEEEEEeehhhhcCCcccCccCCceE
Confidence 21 11111111 11 368888766666654433 33333333333333345577777665
No 474
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.13 E-value=52 Score=36.18 Aligned_cols=109 Identities=8% Similarity=-0.040 Sum_probs=51.5
Q ss_pred EEEEEcCC-----CcEEEEECCCCee---eEEecCCCCCe--EEEEeeccCCccEEEEEec-----CCeEEEEEccCCCc
Q 001160 469 CIVTCGDD-----KMIKVWDVVAGRK---QYTFEGHEAPV--YSVCPHHKESIQFIFSTAI-----DGKIKAWLYDYLGS 533 (1134)
Q Consensus 469 ~l~sg~~d-----~~i~iwd~~~~~~---~~~~~~h~~~v--~~i~~~~~~~~~~l~s~~~-----d~~i~~wd~~~~~~ 533 (1134)
+++.|+.+ ..+..+|+.+.+. ...+..-..+. .+++.. ++.+.+.|+. ...+..||+.+.+-
T Consensus 75 lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~---~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 75 IYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK---DGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred EEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE---CCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 55566654 3566777776553 12222111111 122221 2356666664 23577788776543
Q ss_pred eeEecCC-CCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeE
Q 001160 534 RVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1134)
Q Consensus 534 ~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1134)
...-... .......+..-+++..+.++.+......+..||+.+.+..
T Consensus 152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 3221111 1122222233456666676643222233678898876653
No 475
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=87.04 E-value=47 Score=37.95 Aligned_cols=276 Identities=15% Similarity=0.098 Sum_probs=133.6
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEE
Q 001160 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1134)
Q Consensus 344 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~l 423 (1134)
....+|.++.|.-.|. + -.|+.|| +..||..+++.++...- .....|..+.-+-.| .|
T Consensus 162 l~d~~V~aLv~D~~g~-l-WvgT~dG-L~~fd~~~gkalql~s~------------------~~dk~I~al~~d~qg-~L 219 (671)
T COG3292 162 LKDTPVVALVFDANGR-L-WVGTPDG-LSYFDAGRGKALQLASP------------------PLDKAINALIADVQG-RL 219 (671)
T ss_pred ccCccceeeeeeccCc-E-EEecCCc-ceEEccccceEEEcCCC------------------cchhhHHHHHHHhcC-cE
Confidence 3567899999999997 3 3466554 66678777776543110 111345555544444 45
Q ss_pred EEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE-ecCCC--CCe
Q 001160 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGHE--APV 500 (1134)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~-~~~h~--~~v 500 (1134)
-+|+.+| |.+.+..+.+....- . .-..+.|..+.=..+|. +=.|+..|..+. ....+..... .+-|. ..|
T Consensus 220 WVGTdqG-v~~~e~~G~~~sn~~-~-~lp~~~I~ll~qD~qG~---lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~v 292 (671)
T COG3292 220 WVGTDQG-VYLQEAEGWRASNWG-P-MLPSGNILLLVQDAQGE---LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTV 292 (671)
T ss_pred EEEeccc-eEEEchhhccccccC-C-CCcchheeeeecccCCC---EEEeecccceeE-ecCCCCccccccccCCccccc
Confidence 6677777 777776652211100 0 01123344444334443 444555543322 2233222222 22222 233
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECC--CCCEEEEEeeCCCCCCcEEEEeCCCCe
Q 001160 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA--DGTRLFSCGTSKEGESHLVEWNESEGA 578 (1134)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1134)
.++.. +.+| -|-+++.++.+++-+-+-..........+..+..++.+| .+..+-... ..+.+.+-+..+|.
T Consensus 293 nsL~~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~stG~ 365 (671)
T COG3292 293 NSLWL--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGSTGE 365 (671)
T ss_pred cceee--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCCCc
Confidence 33332 3333 455666666655433221111111111111222222222 111111111 12335556666777
Q ss_pred eEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCC-CeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEE
Q 001160 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1134)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 657 (1134)
.+++........|+.+++..++ .+-.|+...-+..|+..+ +.......+.. ..+|..+.=.|+++ |..|+.+|.++
T Consensus 366 ~v~sv~q~Rg~nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~agl~-ss~V~aived~dns-LWIGTs~Glvk 442 (671)
T COG3292 366 LVRSVHQLRGMNITTTLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDEDAGLP-SSEVSAIVEDPDNS-LWIGTSGGLVK 442 (671)
T ss_pred EEEEeeeccccccchhhhccCC-cEEEEecccchhhhccCCcccccccccCCc-ccceeeeeecCCCC-EEEeccCCeEe
Confidence 7766554444467777777744 455566554466666665 33333332222 24677777788888 77788887754
Q ss_pred E
Q 001160 658 I 658 (1134)
Q Consensus 658 i 658 (1134)
.
T Consensus 443 ~ 443 (671)
T COG3292 443 R 443 (671)
T ss_pred c
Confidence 3
No 476
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.01 E-value=5.9 Score=49.39 Aligned_cols=139 Identities=14% Similarity=0.213 Sum_probs=82.1
Q ss_pred eCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEE--------cCCCCEEEEEeCCCeEEEEEc
Q 001160 366 TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW--------GPDGLMLGVAFSKHIVHLYTY 437 (1134)
Q Consensus 366 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~--------spdg~~las~~~dg~i~iwd~ 437 (1134)
+.|+.+.+|+++++..... +.+-...|..+.. -|.=+++.+...--.|.++-+
T Consensus 96 TiDn~L~lWny~~~~e~~~-------------------~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV 156 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAE-------------------YDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGV 156 (1311)
T ss_pred EeCCeEEEEEcCCCCcccc-------------------ccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEE
Confidence 3488999999998654432 3334444544442 333344544445555666655
Q ss_pred CCCCcccee------eEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC----CC---e-e--------------
Q 001160 438 NPTGELRQH------LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV----AG---R-K-------------- 489 (1134)
Q Consensus 438 ~~~~~~~~~------~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~----~~---~-~-------------- 489 (1134)
.-.+..... ..+......|+|+....+|+ .++ +|.|| .+|.+. +| + +
T Consensus 157 ~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lv 231 (1311)
T KOG1900|consen 157 SFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLV 231 (1311)
T ss_pred EeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eecCC--CEEEEEEeccCchhhcccccccCchhHHHHhh
Confidence 332221111 12222345688999888887 444 55566 455432 11 1 1
Q ss_pred --eEEec-CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccC
Q 001160 490 --QYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 530 (1134)
Q Consensus 490 --~~~~~-~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~ 530 (1134)
+-.+. .+..+|..+++..+. ..+.+-+..++|.+||+..
T Consensus 232 Ps~~~~~~~~~dpI~qi~ID~SR--~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 232 PSLLSVPGSSKDPIRQITIDNSR--NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhhhcCCCCCCCcceeeEecccc--ceeeeeccCceEEEEEccC
Confidence 11223 567799999986655 7899999999999999875
No 477
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.94 E-value=26 Score=43.01 Aligned_cols=248 Identities=11% Similarity=-0.008 Sum_probs=121.7
Q ss_pred EEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEE
Q 001160 778 LIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMS 857 (1134)
Q Consensus 778 ~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~ 857 (1134)
.++..-|..+.+|+.+|.+.+|.+........... . ..... +...-+ ..+|..+...+.-.++.+
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~-~---------~~~~~----~~~~~~-kk~i~~l~~~~~~~~ll~ 84 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL-V---------TETVK----FEKEFS-KKPINKLLVCASLELLLI 84 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhh-h---------cchhH----Hhhhhc-cchhHHHhhcchhcchhe
Confidence 34555677899999999999998764322111000 0 00000 111112 466777777676667777
Q ss_pred EeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCC-----CC--cEEEEEe-CC-CcEEEEEcCCceEEEEecCcccceE
Q 001160 858 ASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ-----DN--NIIAIGM-ED-SSVQIYNVRVDEVKTKLKGHQNRIT 928 (1134)
Q Consensus 858 ~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~-----~~--~~lasg~-~d-g~i~iwd~~~~~~~~~l~~h~~~i~ 928 (1134)
-+|+.|.++++.+.+.... ..+...+ ..|+.+ .+ .+.+... .. .....|+-+.+..+..--+-.....
T Consensus 85 l~dsqi~~~~l~~~~~~~~-~~~~Kg~--~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~ 161 (877)
T KOG2063|consen 85 LSDSQIAVHKLPELEPVPS-GTRLKGA--SLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPK 161 (877)
T ss_pred ecCCcceeeecCccccccc-ccccccc--eeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchh
Confidence 7789999998877665211 1111111 112110 11 1222222 11 1223344333332222222222233
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcce-
Q 001160 929 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECS- 1007 (1134)
Q Consensus 929 ~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~- 1007 (1134)
+++| .+..+.++-.+....+|.-.++..... ........ ..-..+.--+++..++.+.|+...+-|..|...
T Consensus 162 ~~~~--~~~~~c~~~~~~~~ii~~~~~~~~~~~-~~s~~~~~----s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~ 234 (877)
T KOG2063|consen 162 ARAW--CGHIVCLGLKKSYYIINNTSKGVGPNL-FPSSMDNE----SRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQ 234 (877)
T ss_pred hhcc--cceeEEEeecceeEEEecCCCccccce-eeeccccc----cCCCeEEEecCCceEEEccCceEEEEecCCcccC
Confidence 3333 355555554434455555555432221 11111101 123456666778788888888888888766652
Q ss_pred eccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecC
Q 001160 1008 RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1134)
Q Consensus 1008 ~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1056 (1134)
+.-... .....++. .+.-|+++- .++.|.||++.++.++.++.
T Consensus 235 ~~~l~w---s~~P~~v~--~~~PYlIa~-~~~~veI~s~~~~qlvQSI~ 277 (877)
T KOG2063|consen 235 RGTLVW---SEVPLSVV--VESPYLIAL-LDRSVEIRSKLDGQLVQSIT 277 (877)
T ss_pred CCceEe---cccchhhc--ccCceEEEE-ccccEEEEeccCHHHhhccc
Confidence 110000 11111111 234466655 45699999999998887773
No 478
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.72 E-value=3.6 Score=40.24 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=25.9
Q ss_pred cCeEEEEEcCCC------CEEEEEeCCCeEEEEEcCC
Q 001160 409 ISVNRCVWGPDG------LMLGVAFSKHIVHLYTYNP 439 (1134)
Q Consensus 409 ~~V~~i~~spdg------~~las~~~dg~i~iwd~~~ 439 (1134)
..|..++|||-| -+||+.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999954 3788899999999998764
No 479
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=86.70 E-value=56 Score=36.15 Aligned_cols=188 Identities=13% Similarity=0.157 Sum_probs=104.5
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeec--cCCccE--EEEEe-cC---CeEEEEEccCCCc-eeEecC
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH--KESIQF--IFSTA-ID---GKIKAWLYDYLGS-RVDYDA 539 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~--~~~~~~--l~s~~-~d---~~i~~wd~~~~~~-~~~~~~ 539 (1134)
+++....++-+.+||+ .|+.+..+. .+..+.+.... .-+|.. |+.++ .+ .+|++|.++.... ...+..
T Consensus 70 lIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~ 146 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD 146 (381)
T ss_dssp EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred eEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence 6777778889999995 666777664 34455544321 111222 34443 32 5799998874322 222221
Q ss_pred -------CCCcEEEEEE--CC-CCCEEEEEeeCCCCCCcEEEEeCC---CC----eeEEEecCccCcceEEEEEeCCCCE
Q 001160 540 -------PGNWCTMMAY--SA-DGTRLFSCGTSKEGESHLVEWNES---EG----AIKRTYSGFRKRSLGVVQFDTTRNR 602 (1134)
Q Consensus 540 -------~~~~v~~~~~--s~-~~~~l~~~~~~~~~~~~i~~wd~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~~ 602 (1134)
....++.+|+ ++ +|.+.+.... ++|.+..|.+. .+ +++++|.... .+..|.......+
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~---k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~ 221 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG---KDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGR 221 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE---TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTE
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEec---CCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCC
Confidence 1224667776 33 4665555442 35667766653 33 4678887655 5778888888899
Q ss_pred EEEEeCCCeEEEEECCC-----CeeEEEEeCCCCCCCcceEEEc--cCCC-EEEEEeC-CCcEEEEECCCc
Q 001160 603 FLAAGDEFQIKFWDMDN-----MNMLTTVDADGGLPASPRLRFN--KEGS-LLAVTTS-DNGIKILANSDG 664 (1134)
Q Consensus 603 l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~s--~d~~-~l~~~~~-dg~i~iw~~~~~ 664 (1134)
|+.+-++.-|.-|+.+. ++.+.......-...|-.+++- .+++ +|++.+. +++..||+....
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99999998888888762 2222222222223456666664 3443 4544444 778999997654
No 480
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=86.65 E-value=41 Score=34.58 Aligned_cols=188 Identities=13% Similarity=0.101 Sum_probs=118.3
Q ss_pred CCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEE
Q 001160 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 918 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~ 918 (1134)
...-..++-+|||..-.++. .+.|--.|-.+++....-.+....-..+..-| |+..-++-+.. -|.-.|-++.+. .
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~ev-t 137 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEV-T 137 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccce-E
Confidence 45567789999999888887 67788888888888777666666677888888 44444332222 344445444432 2
Q ss_pred Ee----cCcccceEEEEEecCCCEEEEEcC---------CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCC
Q 001160 919 KL----KGHQNRITGLAFSPTLNALVSSGA---------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 985 (1134)
Q Consensus 919 ~l----~~h~~~i~~l~~s~d~~~l~s~~~---------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd 985 (1134)
++ +.-.+......|.++|++..|+.. .+.|++|+.-.|. ....++..||
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~------------------gpyGi~atpd 199 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGG------------------GPYGICATPD 199 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCC------------------CCcceEECCC
Confidence 22 223345778889999998888753 2345666554332 4577899999
Q ss_pred CcEEEEE-ECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001160 986 QTHLLVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 986 g~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~ 1048 (1134)
|...+++ .++-|-..|.....-..+.........-..+--+|.|+.-++-...+.+.-||-.+
T Consensus 200 Gsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 200 GSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred CcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 9987774 55666666662223333333333223344455567777777766677777777654
No 481
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=86.16 E-value=24 Score=32.11 Aligned_cols=108 Identities=16% Similarity=0.130 Sum_probs=66.6
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEEcCCc--------eEEEEecCcccceEEEEEec-----CCCEEEEEcCCCcEEEEeCC
Q 001160 888 AFHPQDNNIIAIGMEDSSVQIYNVRVD--------EVKTKLKGHQNRITGLAFSP-----TLNALVSSGADAQLCMWSID 954 (1134)
Q Consensus 888 ~~s~~~~~~lasg~~dg~i~iwd~~~~--------~~~~~l~~h~~~i~~l~~s~-----d~~~l~s~~~D~~i~iWd~~ 954 (1134)
.|.. ...-|+.++.-|+|.|++.... ..+..|. -...|++|+-.+ +...|+.|+ ...+..||+.
T Consensus 5 kfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 5 KFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 4544 4457888888899999986633 2334443 445688887654 345666666 4569999999
Q ss_pred CcccccceeeecCCCCCCCCcCceEEEEC---C-CCcEEEEEECCeEEEEeCCCcce
Q 001160 955 KWEKLKSRFIQAPAGRQSPLVGETKVQFH---N-DQTHLLVVHESQISVYDSKLECS 1007 (1134)
Q Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~v~~~~fs---p-dg~~l~~~~d~~v~vwd~~~~~~ 1007 (1134)
....+- .+... .++.++.+- . +..+++++++..|.-||.++..+
T Consensus 82 ~N~d~F---yke~~------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 82 NNSDLF---YKEVP------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred cCchhh---hhhCc------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 866432 11111 356666653 2 34456667777788787766553
No 482
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=85.84 E-value=1e+02 Score=38.47 Aligned_cols=173 Identities=12% Similarity=0.133 Sum_probs=100.6
Q ss_pred CCceEEEEec---c----CCCEEEEEeCCeEEEEECCCC---------------eEEEEecC---CCCceEEEEEcCCCC
Q 001160 840 EESAACIALS---K----NDSYVMSASGGKVSLFNMMTF---------------KVMTMFMS---PPPAATFLAFHPQDN 894 (1134)
Q Consensus 840 ~~~i~~~~~s---~----dg~~la~~sdg~i~vwd~~~~---------------~~~~~~~~---~~~~i~~l~~s~~~~ 894 (1134)
..+|..|+|+ . ..++|++-....+.|+...-. .++..+.. ...+...++|.|.+.
T Consensus 79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~ 158 (765)
T PF10214_consen 79 GSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQ 158 (765)
T ss_pred CCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCcc
Confidence 7788999998 2 235777777777888772211 12233321 123466778887677
Q ss_pred cEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCC
Q 001160 895 NIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL 974 (1134)
Q Consensus 895 ~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~ 974 (1134)
+.+|+.+..|...||++...... +. .... +.....|.| +.|.+.-
T Consensus 159 ~q~AiVD~~G~Wsvw~i~~~~~~-----~~-~~~~----------~~~~~~gsi-~~d~~e~------------------ 203 (765)
T PF10214_consen 159 RQFAIVDEKGNWSVWDIKGRPKR-----KS-SNLR----------LSRNISGSI-IFDPEEL------------------ 203 (765)
T ss_pred ceEEEEeccCcEEEEEecccccc-----CC-ccee----------eccCCCccc-cCCCccc------------------
Confidence 77888888888888887211100 00 1111 111112222 1221110
Q ss_pred cCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccC--CCEEEEEecCCcEEEEeCCCc
Q 001160 975 VGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCD--GLLVYAGFCDGAIGVFDAETL 1049 (1134)
Q Consensus 975 ~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~d--g~~l~~~~~dg~I~vwd~~~~ 1049 (1134)
..-..+.|.++-..|+++....+.++|++......+.........|..+.-+++ +..++. +...|...++.+.
T Consensus 204 s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKSS 278 (765)
T ss_pred CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccCC
Confidence 123578888998999999999999999944433221222223678999999887 333333 3467888888873
No 483
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.70 E-value=5.9 Score=43.09 Aligned_cols=163 Identities=12% Similarity=0.120 Sum_probs=87.1
Q ss_pred EecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeee-EEecC-CCC----CeE-EEEeeccCCccEEEEEecCC
Q 001160 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YTFEG-HEA----PVY-SVCPHHKESIQFIFSTAIDG 521 (1134)
Q Consensus 449 ~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~-~~~~~-h~~----~v~-~i~~~~~~~~~~l~s~~~d~ 521 (1134)
+..-...|..+-..|||+.+++.+| ..+.++++.+.... +++-. ..+ .|+ ++.. -..|.-++.+..||
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g---~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~l--L~Gg~SLLv~~~dG 290 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG---SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYL--LSGGFSLLVVHEDG 290 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC---CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHH--HhCceeEEEEcCCC
Confidence 4445567888899999997777776 46788887654321 11111 111 111 1111 11336788889999
Q ss_pred eEEEE-EccCCCce-----eEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEE
Q 001160 522 KIKAW-LYDYLGSR-----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQ 595 (1134)
Q Consensus 522 ~i~~w-d~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~ 595 (1134)
.|.-| |.+..... ..+......+..+.-..+.+-+++-. ..|++..+.....+.+-.-.... ....++
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~----~~G~L~~f~st~~~~lL~~~~~~--~~~~~~ 364 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLY----RNGTLQSFYSTSEKLLLFERAYQ--APQLVA 364 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEc----CCCceeeeecccCcceehhhhhc--Ccceee
Confidence 99888 43332221 11222222333333222233344432 25556665544333322222222 455688
Q ss_pred EeCCCCEEEEEeCCCeEEEEECCCCeeE
Q 001160 596 FDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1134)
Q Consensus 596 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1134)
++|.+.++++- ..|.++++.+++..+.
T Consensus 365 ~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 365 MSPNQAYLLSE-DQGKIRLAQLENRNPE 391 (733)
T ss_pred eCcccchheee-cCCceEEEEecCCCCC
Confidence 99999988875 4567999888775543
No 484
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=85.07 E-value=55 Score=42.67 Aligned_cols=66 Identities=14% Similarity=0.069 Sum_probs=47.2
Q ss_pred cCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 001160 975 VGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV 1043 (1134)
Q Consensus 975 ~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~v 1043 (1134)
..|+.++.-.+.++++....|.+....-.+. ... ....+..+.|..++......+ ++...+|.++-
T Consensus 703 ~~i~a~Avv~~~~fvald~qg~lt~h~k~g~-p~~-l~~~gl~G~ik~l~lD~~~nL-~Alt~~G~Lf~ 768 (1774)
T PF11725_consen 703 RVITAFAVVNDNKFVALDDQGDLTAHQKPGR-PVP-LSRPGLSGEIKDLALDEKQNL-YALTSTGELFR 768 (1774)
T ss_pred CcceeEEEEcCCceEEeccCCccccccCCCC-Ccc-CCCCCCCcchhheeeccccce-eEecCCCceee
Confidence 4688899988888888888888888874333 222 223345789999999887664 44557887665
No 485
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=84.83 E-value=15 Score=40.74 Aligned_cols=144 Identities=14% Similarity=0.131 Sum_probs=83.9
Q ss_pred CCcEEE-EEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCC--------CEEEEEcCCCcEEEEeCC-Ccccccce
Q 001160 893 DNNIIA-IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL--------NALVSSGADAQLCMWSID-KWEKLKSR 962 (1134)
Q Consensus 893 ~~~~la-sg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~--------~~l~s~~~D~~i~iWd~~-~~~~~~~~ 962 (1134)
+..+|. .|.....++--|+.-|+.+..+..|.+. -+.|.|+. +.|+-.| +..|.-.|.. .|..+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccCCceeee
Confidence 455444 4555667888899999999999988775 46777752 3455444 4434333332 22221111
Q ss_pred eeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcE
Q 001160 963 FIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAI 1041 (1134)
Q Consensus 963 ~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I 1041 (1134)
-.....+. ..-.+.. .....++|+ +..|.|++||.-+...+...+. ....|..+..+.+|+++++.+ ...+
T Consensus 555 esKdY~tK----n~Fss~~-tTesGyIa~as~kGDirLyDRig~rAKtalP~--lG~aIk~idvta~Gk~ilaTC-k~yl 626 (776)
T COG5167 555 ESKDYKTK----NKFSSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTALPG--LGDAIKHIDVTANGKHILATC-KNYL 626 (776)
T ss_pred eehhcccc----ccccccc-cccCceEEEecCCCceeeehhhcchhhhcCcc--cccceeeeEeecCCcEEEEee-cceE
Confidence 11111111 1112222 223346666 6778999999855544444433 378999999999999877654 4466
Q ss_pred EEEeCC
Q 001160 1042 GVFDAE 1047 (1134)
Q Consensus 1042 ~vwd~~ 1047 (1134)
-+-|+.
T Consensus 627 lL~d~~ 632 (776)
T COG5167 627 LLTDVP 632 (776)
T ss_pred EEEecc
Confidence 666653
No 486
>PLN02193 nitrile-specifier protein
Probab=84.48 E-value=89 Score=36.48 Aligned_cols=149 Identities=7% Similarity=-0.046 Sum_probs=72.2
Q ss_pred EEEEEcCC-----CcEEEEECCCCeeeEEecC---CC-CCeEEEEeeccCCccEEEEEecCC-----eEEEEEccCCCce
Q 001160 469 CIVTCGDD-----KMIKVWDVVAGRKQYTFEG---HE-APVYSVCPHHKESIQFIFSTAIDG-----KIKAWLYDYLGSR 534 (1134)
Q Consensus 469 ~l~sg~~d-----~~i~iwd~~~~~~~~~~~~---h~-~~v~~i~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~ 534 (1134)
+.+.|+.+ ..+..+|+.+.+....-.. .. ..-.+++. . ++.+.+.|+.++ .+..||+.+.+-.
T Consensus 231 lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~--~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 231 LYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA--D-EENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred EEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE--E-CCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 55556554 3688899887664331110 01 11112222 1 235666666543 4667777654322
Q ss_pred eEec-----CCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecC---ccCcceEEEEEeCCCCEEEEE
Q 001160 535 VDYD-----APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG---FRKRSLGVVQFDTTRNRFLAA 606 (1134)
Q Consensus 535 ~~~~-----~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~ 606 (1134)
..-. ...... .++ .-+++.++.++.++.....+.+||+.+.+....-.. .......++ ..-+++.++.|
T Consensus 308 ~~~~~~~~~~~R~~~-~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~G 384 (470)
T PLN02193 308 HCSTPGDSFSIRGGA-GLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFG 384 (470)
T ss_pred eCCCCCCCCCCCCCc-EEE-EECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEEC
Confidence 2110 001111 122 235666666664332235699999988765443211 111011122 22345666677
Q ss_pred eCC--------------CeEEEEECCCCeeE
Q 001160 607 GDE--------------FQIKFWDMDNMNML 623 (1134)
Q Consensus 607 ~~d--------------g~i~iwd~~~~~~~ 623 (1134)
+.. ..+.++|+.+.+-.
T Consensus 385 G~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 385 GEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred CccCCccccccCccceeccEEEEEcCcCEEE
Confidence 642 24788998877654
No 487
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.09 E-value=18 Score=46.02 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=43.0
Q ss_pred CceEEEECCCCcEEEEEECCeEEEEeCCCccee-ccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcce
Q 001160 976 GETKVQFHNDQTHLLVVHESQISVYDSKLECSR-SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF 1051 (1134)
Q Consensus 976 ~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~-~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~ 1051 (1134)
.+.+..+...+..+.....+.+.+|+....... .+... ++. .+.++..++++..||.+.+||...|..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPN-GQL-------ESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccceeeeecCCCcceeeeeeeeeehhcccccchhhcccc-ccc-------CccCCceEEEEEecCCEEeeecCCCce
Confidence 344444444555555555566666666333332 22221 111 188999999999999999999999865
No 488
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.55 E-value=27 Score=39.18 Aligned_cols=41 Identities=20% Similarity=0.136 Sum_probs=28.3
Q ss_pred ccEEEeecCCC--CCEEEEEeCCCcEEEEecCCCccccCCCCC
Q 001160 1071 HPLVIAPHPSE--PNQIALGMSDGAVHVVEPSDAELKWGGTPS 1111 (1134)
Q Consensus 1071 ~~~~~~~~~~d--~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~~ 1111 (1134)
...-++|+|.. ...|+.-+.|..+++|+++.....|..+++
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpge 209 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPGE 209 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccCCC
Confidence 34456666642 356666778899999999888877766554
No 489
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=83.53 E-value=75 Score=34.89 Aligned_cols=108 Identities=9% Similarity=0.019 Sum_probs=52.4
Q ss_pred cEEEEEecC-----CeEEEEEccCCCce---eEecCCCCcE--EEEEECCCCCEEEEEeeC-CCCCCcEEEEeCCCCeeE
Q 001160 512 QFIFSTAID-----GKIKAWLYDYLGSR---VDYDAPGNWC--TMMAYSADGTRLFSCGTS-KEGESHLVEWNESEGAIK 580 (1134)
Q Consensus 512 ~~l~s~~~d-----~~i~~wd~~~~~~~---~~~~~~~~~v--~~~~~s~~~~~l~~~~~~-~~~~~~i~~wd~~~~~~~ 580 (1134)
.+++.|+.+ ..+..+|+.+.... ..+....... .+++. -+++..+.++.. ......+..||+.+.+..
T Consensus 74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 566666654 34666777665431 1111111111 12222 245555666531 112346888998876643
Q ss_pred EE--ecCccCcceEEEEEeCCCCEEEEEeCCC----eEEEEECCCCee
Q 001160 581 RT--YSGFRKRSLGVVQFDTTRNRFLAAGDEF----QIKFWDMDNMNM 622 (1134)
Q Consensus 581 ~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~ 622 (1134)
.. +.... .....+...+++..+.||.++ .+.+||..+.+-
T Consensus 153 ~~~~~p~~~--r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 153 ELPDFPGEP--RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred ECCCCCCCC--CCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 32 22111 112222334566677777553 356888887654
No 490
>PRK13613 lipoprotein LpqB; Provisional
Probab=83.49 E-value=75 Score=38.00 Aligned_cols=193 Identities=11% Similarity=0.007 Sum_probs=101.1
Q ss_pred ceEEEEeccCCCEEEEEe-CC-eEEEEECCCCeE-----EEEecCCCCceEEEEEcCCCCcEEEE-EeCCC--cEEEEEc
Q 001160 842 SAACIALSKNDSYVMSAS-GG-KVSLFNMMTFKV-----MTMFMSPPPAATFLAFHPQDNNIIAI-GMEDS--SVQIYNV 911 (1134)
Q Consensus 842 ~i~~~~~s~dg~~la~~s-dg-~i~vwd~~~~~~-----~~~~~~~~~~i~~l~~s~~~~~~las-g~~dg--~i~iwd~ 911 (1134)
.+.+++.|+++..+|... ++ .+.+..+..+.. ...+. ....+.-.|.+ ++.+-.+ +..++ .+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~-~g~vWtvd~~~~~~~vl~v~~~ 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDG-RGDLWVVDRDPADPRLLWLLQG 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcC-CCCEEEecCCCCCceEEEEEcC
Confidence 678899999999998877 44 466665533322 11122 23456667777 4433322 11122 2555543
Q ss_pred CCceEEEE-ecCccc-ceEEEEEecCCCEEEEEcC---CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCC
Q 001160 912 RVDEVKTK-LKGHQN-RITGLAFSPTLNALVSSGA---DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 986 (1134)
Q Consensus 912 ~~~~~~~~-l~~h~~-~i~~l~~s~d~~~l~s~~~---D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg 986 (1134)
+|+.... .....+ .|+.+..|+||..+|.... .++|.|=-+.....-. ..+..+..-......+..++|..++
T Consensus 441 -~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~-~~l~~~~~l~~~l~~v~~~~W~~~~ 518 (599)
T PRK13613 441 -DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAV-VSVEEFRSLAPELEDVTDMSWAGDS 518 (599)
T ss_pred -CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCc-EEeeccEEeccCCCccceeEEcCCC
Confidence 4443211 112223 7999999999988776543 3556555443321111 1111111000111358899999999
Q ss_pred cEEEEE--ECCeEEEEeC--CCcceeccCCCCCCCCCeEEEEEccCCC-EEEEEecCCcE
Q 001160 987 THLLVV--HESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGL-LVYAGFCDGAI 1041 (1134)
Q Consensus 987 ~~l~~~--~d~~v~vwd~--~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~~~~~dg~I 1041 (1134)
.+++.+ .++...+|-+ .+.....-. .+.-..+.+++-..+.+ .++.+..++.|
T Consensus 519 sL~Vlg~~~~~~~~v~~v~vdG~~~~~~~--~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 519 QLVVLGREEGGVQQARYVQVDGSTPPASA--PAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred EEEEEeccCCCCcceEEEecCCcCccccc--ccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 988854 3334445544 444332111 11245677777777666 45543555554
No 491
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=83.25 E-value=81 Score=35.05 Aligned_cols=41 Identities=10% Similarity=-0.091 Sum_probs=19.5
Q ss_pred CeEEEEEccCCCceeEecCCC-CcEEEEEECCCCCEEEEEee
Q 001160 521 GKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGT 561 (1134)
Q Consensus 521 ~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~ 561 (1134)
..+.+||..+.+-...-.... .........-+++..+.++.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee
Confidence 467888877654433211111 11111222345677777765
No 492
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=83.21 E-value=0.41 Score=52.25 Aligned_cols=123 Identities=17% Similarity=0.286 Sum_probs=88.6
Q ss_pred cceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEE
Q 001160 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1134)
Q Consensus 336 ~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~ 415 (1134)
.++.+-.+..++.-..++|.-+|..+++.+-..+.+.+||+.+...-. +-.+-...-.-+.
T Consensus 64 agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-------------------LE~gg~~s~sll~ 124 (615)
T KOG2247|consen 64 AGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-------------------LESGGTSSKSLLA 124 (615)
T ss_pred hcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-------------------HhccCcchHHHHh
Confidence 445555555666777888988998777777888999999998653211 0112222233378
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 416 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
|++.+..++.+...|.+.|++..+..... ....|..+++++++.+.+. .+.++.|..+.+-.
T Consensus 125 wsKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 125 WSKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VILCDCDNTLSVTT 186 (615)
T ss_pred hccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccce---eeecCcHHHHHHhh
Confidence 99999999999999999999988765443 3333999999999999885 77788787665544
No 493
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.51 E-value=93 Score=35.21 Aligned_cols=96 Identities=13% Similarity=0.057 Sum_probs=54.0
Q ss_pred CCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEE
Q 001160 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 918 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~ 918 (1134)
.-.|..+..++.|..+|-.+ +|.+..+=...+..-..+......|+|=.|+- +.+++. .+
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i-~~~~ft-ss----------------- 163 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPV-AERFFT-SS----------------- 163 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecc-cceeec-cC-----------------
Confidence 55678899999999998887 66544332222222233332333344444443 222221 10
Q ss_pred EecCcccceEEEEEecCC---CEEEEEcCCCcEEEEeCCCccc
Q 001160 919 KLKGHQNRITGLAFSPTL---NALVSSGADAQLCMWSIDKWEK 958 (1134)
Q Consensus 919 ~l~~h~~~i~~l~~s~d~---~~l~s~~~D~~i~iWd~~~~~~ 958 (1134)
..-.+...+|+|+. ..|..-+.|.++|+||+.....
T Consensus 164 ----~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 164 ----TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred ----CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcch
Confidence 01124456777764 5666777788999999887553
No 494
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=81.81 E-value=41 Score=30.67 Aligned_cols=117 Identities=7% Similarity=0.088 Sum_probs=68.0
Q ss_pred CCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc-----CCCEEEE
Q 001160 783 SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-----NDSYVMS 857 (1134)
Q Consensus 783 ~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~-----dg~~la~ 857 (1134)
....|++++..|.|.|++.......... ....++ .+.- ...|++++-.+ +...|+.
T Consensus 9 ~~pcL~~aT~~gKV~IH~ph~~~~~~~~---~~~~i~------------~LNi----n~~italaaG~l~~~~~~D~Lli 69 (136)
T PF14781_consen 9 VHPCLACATTGGKVFIHNPHERGQRTGR---QDSDIS------------FLNI----NQEITALAAGRLKPDDGRDCLLI 69 (136)
T ss_pred CceeEEEEecCCEEEEECCCcccccccc---ccCcee------------EEEC----CCceEEEEEEecCCCCCcCEEEE
Confidence 3345777777888888875432221110 000000 1111 56777776544 4568889
Q ss_pred EeCCeEEEEECCCCeEEEEecCCCCceEEEEEc---CCCCcEEEEEeCCCcEEEEEcCCceEEEEe
Q 001160 858 ASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFH---PQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 920 (1134)
Q Consensus 858 ~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s---~~~~~~lasg~~dg~i~iwd~~~~~~~~~l 920 (1134)
|+...+..||+.....+..-.- ...|.++.+- .....++++| -+..|.-||....+...+.
T Consensus 70 Gt~t~llaYDV~~N~d~Fyke~-~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 70 GTQTSLLAYDVENNSDLFYKEV-PDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred eccceEEEEEcccCchhhhhhC-ccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEEe
Confidence 9999999999998766544332 3566676663 2123445444 4567888887666655554
No 495
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.55 E-value=8.1 Score=39.41 Aligned_cols=73 Identities=15% Similarity=0.210 Sum_probs=50.3
Q ss_pred EecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccc-------cCCcCeEEEEEcCCCCEEEEE
Q 001160 354 FHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN-------DAAISVNRCVWGPDGLMLGVA 426 (1134)
Q Consensus 354 ~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~h~~~V~~i~~spdg~~las~ 426 (1134)
+..++.+ |.+-+.+|.+++||+.+++.+... .. ...++. .....|..+.++.+|.-|++-
T Consensus 18 l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~S-----------i~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 18 LECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VS-----------IAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred EEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-cc-----------HHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 4556765 555677999999999998876542 11 111222 466779999999999877765
Q ss_pred eCCCeEEEEEcCCC
Q 001160 427 FSKHIVHLYTYNPT 440 (1134)
Q Consensus 427 ~~dg~i~iwd~~~~ 440 (1134)
+ +|....|+.+-+
T Consensus 85 s-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 85 S-NGDSYSYSPDLG 97 (219)
T ss_pred e-CCCEEEeccccc
Confidence 4 577888887653
No 496
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=81.53 E-value=44 Score=34.53 Aligned_cols=138 Identities=12% Similarity=0.108 Sum_probs=75.7
Q ss_pred EEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC----CeeEEEec-CccCcceEEEEEeC
Q 001160 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----GAIKRTYS-GFRKRSLGVVQFDT 598 (1134)
Q Consensus 524 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----~~~~~~~~-~~~~~~v~~~~~~~ 598 (1134)
.+||+.+.+..-..........+-++-+||+++.+++. .++...+++++..+ ......-. -......-+...-+
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 45777665543322223334445567789999988874 44566788888654 11111100 01111344566678
Q ss_pred CCCEEEEEeCCC-eEEEEECCC-Ce-eEE--EEeC---CCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 599 TRNRFLAAGDEF-QIKFWDMDN-MN-MLT--TVDA---DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 599 ~~~~l~~~~~dg-~i~iwd~~~-~~-~~~--~~~~---~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
||+.++.||... +..+|.... .. ... .+.. .....--..+...|||++++.+..+. .|||..++
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n 199 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTN 199 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCC
Confidence 999999988664 345555422 11 111 1110 11111223567789999998887654 46687766
No 497
>PRK13613 lipoprotein LpqB; Provisional
Probab=81.46 E-value=1.3e+02 Score=36.11 Aligned_cols=153 Identities=14% Similarity=0.079 Sum_probs=85.6
Q ss_pred ceEEEEEcCCCCcEEEEEeCCC-cEEEEEcCCceE-----EEEecCcccceEEEEEecCCCEEEEEcC--CC--cEEEEe
Q 001160 883 AATFLAFHPQDNNIIAIGMEDS-SVQIYNVRVDEV-----KTKLKGHQNRITGLAFSPTLNALVSSGA--DA--QLCMWS 952 (1134)
Q Consensus 883 ~i~~l~~s~~~~~~lasg~~dg-~i~iwd~~~~~~-----~~~l~~h~~~i~~l~~s~d~~~l~s~~~--D~--~i~iWd 952 (1134)
.+.+.+.|+ ++..+|....++ .+++..+..+.. ...+. ...++.-.|.+++. +-++.. ++ .+++..
T Consensus 364 ~~~s~avS~-~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~~g~-vWtvd~~~~~~~vl~v~~ 439 (599)
T PRK13613 364 PLRRVAVSR-DESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDGRGD-LWVVDRDPADPRLLWLLQ 439 (599)
T ss_pred CccceEEcC-CCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcCCCC-EEEecCCCCCceEEEEEc
Confidence 678999999 778777776655 566655433322 12233 23467778888774 444422 22 255554
Q ss_pred CCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EE---CCeEEEEeC----CCc-ceeccCC-CCCCCCCeEE
Q 001160 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VH---ESQISVYDS----KLE-CSRSWSP-KDALPAPISS 1022 (1134)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~---d~~v~vwd~----~~~-~~~~~~~-~~~h~~~v~~ 1022 (1134)
- +++... +... ... ...|..+..|+||.+++. .. .++|.|--+ .+. .+..... ... ...+.+
T Consensus 440 ~-~G~~~~---V~~~-~l~--g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~-l~~v~~ 511 (599)
T PRK13613 440 G-DGEPVE---VRTP-ELD--GHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPE-LEDVTD 511 (599)
T ss_pred C-CCcEEE---eecc-ccC--CCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccC-CCccce
Confidence 3 444321 2221 111 136999999999999888 32 256665544 332 1211111 112 335999
Q ss_pred EEEccCCCEEEEEe-cCCcEEEEeCC
Q 001160 1023 AIYSCDGLLVYAGF-CDGAIGVFDAE 1047 (1134)
Q Consensus 1023 v~~s~dg~~l~~~~-~dg~I~vwd~~ 1047 (1134)
++|..++.+++.+. .++...+|-+.
T Consensus 512 ~~W~~~~sL~Vlg~~~~~~~~v~~v~ 537 (599)
T PRK13613 512 MSWAGDSQLVVLGREEGGVQQARYVQ 537 (599)
T ss_pred eEEcCCCEEEEEeccCCCCcceEEEe
Confidence 99999999877553 33345555443
No 498
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=81.00 E-value=34 Score=36.30 Aligned_cols=105 Identities=11% Similarity=0.124 Sum_probs=65.7
Q ss_pred CCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEe------cCCeEEEEEccCCCceeEec----CCCCcEE
Q 001160 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA------IDGKIKAWLYDYLGSRVDYD----APGNWCT 545 (1134)
Q Consensus 476 d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~----~~~~~v~ 545 (1134)
-..|++||..+.+...--.+-.+.|.++.|..+. ++++.|. ....+..||+.+..-...-. .-.++|.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~--~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNN--QLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCC--EEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 3469999988877665555677889999997432 6666664 35568889887654322222 1235777
Q ss_pred EEEECC-CCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE
Q 001160 546 MMAYSA-DGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1134)
Q Consensus 546 ~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1134)
.+.+.. |+..+..++...++...|..||-.....+..
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~ 130 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGS 130 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCCceEeccc
Confidence 777643 4444444443345667788887655444433
No 499
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=80.56 E-value=66 Score=32.19 Aligned_cols=111 Identities=17% Similarity=0.287 Sum_probs=67.2
Q ss_pred eEEEEeccCCCEEEEEeCCeEEEEECC--CCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCC------cEEEE---Ec
Q 001160 843 AACIALSKNDSYVMSASGGKVSLFNMM--TFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS------SVQIY---NV 911 (1134)
Q Consensus 843 i~~~~~s~dg~~la~~sdg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg------~i~iw---d~ 911 (1134)
...++-+..+.++++++...|.+|++. ..+.+.+|.. -+.|..++++. .|++|++--.+. .+|+| +.
T Consensus 20 P~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~ 97 (215)
T PF14761_consen 20 PTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRS 97 (215)
T ss_pred cceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhh
Confidence 344555553445455668889999988 4566777774 37899999999 899999864332 45664 22
Q ss_pred C--CceEEE-EecCc---------------------ccceEEEEEecC-CCEEEEEcCCCcEEEEeCCCcc
Q 001160 912 R--VDEVKT-KLKGH---------------------QNRITGLAFSPT-LNALVSSGADAQLCMWSIDKWE 957 (1134)
Q Consensus 912 ~--~~~~~~-~l~~h---------------------~~~i~~l~~s~d-~~~l~s~~~D~~i~iWd~~~~~ 957 (1134)
. ..+.+. .+-|| +.++.+++--|- |++|+ |+ ++++.+|.+....
T Consensus 98 ~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 98 QKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQT 166 (215)
T ss_pred hcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEE
Confidence 2 112221 22232 223556666553 55444 44 5679999887644
No 500
>PRK13615 lipoprotein LpqB; Provisional
Probab=80.51 E-value=1.3e+02 Score=35.56 Aligned_cols=152 Identities=7% Similarity=-0.040 Sum_probs=89.0
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCC-ccccccee
Q 001160 885 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK-WEKLKSRF 963 (1134)
Q Consensus 885 ~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~-~~~~~~~~ 963 (1134)
.+++.++ ++..+|....++.++++... +.....+. ...++.-.|.++| .+-++..+...++..... |+.. .
T Consensus 337 ~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~---~ 408 (557)
T PRK13615 337 DAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGH---P 408 (557)
T ss_pred ccceEcC-CCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceE---E
Confidence 7889999 88888888778888888665 22222233 2346677788877 444444333455554433 2321 1
Q ss_pred eecCCCCCCCCcCceEEEECCCCcEEEEE-E---CCeEEEEeC--CCc---ce-ec-cCCCCCCCCCeEEEEEccCCCEE
Q 001160 964 IQAPAGRQSPLVGETKVQFHNDQTHLLVV-H---ESQISVYDS--KLE---CS-RS-WSPKDALPAPISSAIYSCDGLLV 1032 (1134)
Q Consensus 964 ~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~---d~~v~vwd~--~~~---~~-~~-~~~~~~h~~~v~~v~~s~dg~~l 1032 (1134)
+.... .. ...|..+..|+||.+++.- . .++|.|--+ .+. .+ .. .....+ ...+.++.|..+++++
T Consensus 409 v~v~~-~~--~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~-l~~v~sl~W~~~~~la 484 (557)
T PRK13615 409 VAVSW-TA--TGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLAS-PGTPLDATWVDELDVA 484 (557)
T ss_pred eeccc-cC--CCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccC-cCcceeeEEcCCCEEE
Confidence 11111 11 1469999999999998883 2 356666444 222 22 11 111122 3489999999999976
Q ss_pred EEEe---cCCcEEEEeCCC
Q 001160 1033 YAGF---CDGAIGVFDAET 1048 (1134)
Q Consensus 1033 ~~~~---~dg~I~vwd~~~ 1048 (1134)
+.+. .+..+++..+..
T Consensus 485 Vl~~~~~~~~~v~~v~v~g 503 (557)
T PRK13615 485 TLTLAPDGERQVELHQVGG 503 (557)
T ss_pred EEeccCCCCceEEEEECCC
Confidence 6652 234566666663
Done!