Query 001161
Match_columns 1134
No_of_seqs 1158 out of 6394
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 17:29:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 2E-139 4E-144 1357.7 91.3 956 17-1016 8-1006(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 9E-56 2E-60 543.0 29.6 578 195-885 161-787 (889)
3 PLN03194 putative disease resi 100.0 7.4E-42 1.6E-46 331.3 16.0 157 15-185 20-179 (187)
4 PLN00113 leucine-rich repeat r 100.0 3.4E-37 7.4E-42 402.7 22.7 407 508-925 42-485 (968)
5 PF00931 NB-ARC: NB-ARC domain 100.0 4.5E-36 9.7E-41 335.7 13.6 267 197-467 1-283 (287)
6 PLN00113 leucine-rich repeat r 100.0 2.2E-35 4.7E-40 385.7 19.7 366 587-964 212-590 (968)
7 KOG4194 Membrane glycoprotein 100.0 1.3E-30 2.7E-35 286.0 6.7 336 587-957 102-451 (873)
8 KOG4194 Membrane glycoprotein 99.9 4.1E-29 8.9E-34 274.1 2.1 350 539-897 82-447 (873)
9 KOG0444 Cytoskeletal regulator 99.9 1.7E-29 3.8E-34 277.8 -6.0 358 558-928 6-375 (1255)
10 KOG0444 Cytoskeletal regulator 99.9 3.9E-29 8.5E-34 275.0 -4.4 338 553-904 26-377 (1255)
11 KOG0472 Leucine-rich repeat pr 99.9 7.9E-29 1.7E-33 261.1 -12.6 406 535-958 45-518 (565)
12 KOG0472 Leucine-rich repeat pr 99.9 4.7E-27 1E-31 247.7 -6.1 394 539-958 72-541 (565)
13 KOG0618 Serine/threonine phosp 99.9 2.4E-26 5.2E-31 266.2 -1.5 400 537-955 47-510 (1081)
14 PLN03210 Resistant to P. syrin 99.9 2.4E-23 5.2E-28 272.0 19.6 329 587-955 558-903 (1153)
15 KOG0618 Serine/threonine phosp 99.8 1E-22 2.2E-27 236.5 -1.0 345 589-957 47-419 (1081)
16 PF01582 TIR: TIR domain; Int 99.8 1.4E-20 3.1E-25 185.0 5.0 129 24-152 1-140 (141)
17 PRK15387 E3 ubiquitin-protein 99.8 2.6E-19 5.6E-24 216.6 16.1 260 590-886 204-463 (788)
18 PRK15387 E3 ubiquitin-protein 99.8 1.9E-18 4.2E-23 209.0 18.8 226 681-943 242-467 (788)
19 smart00255 TIR Toll - interleu 99.8 2.2E-18 4.7E-23 170.2 10.8 134 21-155 1-138 (140)
20 PRK15370 E3 ubiquitin-protein 99.7 5.7E-18 1.2E-22 206.7 14.2 265 659-959 179-446 (754)
21 PRK15370 E3 ubiquitin-protein 99.7 9.2E-18 2E-22 204.8 14.5 246 588-881 179-428 (754)
22 KOG4237 Extracellular matrix p 99.7 5E-19 1.1E-23 187.6 -4.6 263 592-858 51-359 (498)
23 KOG0617 Ras suppressor protein 99.6 2E-17 4.3E-22 155.7 -3.6 167 674-866 26-194 (264)
24 KOG4237 Extracellular matrix p 99.6 8.4E-17 1.8E-21 170.9 -0.9 300 587-890 67-486 (498)
25 cd00116 LRR_RI Leucine-rich re 99.5 2.1E-15 4.6E-20 171.7 2.6 234 718-956 43-318 (319)
26 KOG0617 Ras suppressor protein 99.5 5.1E-16 1.1E-20 146.3 -4.7 155 725-881 32-186 (264)
27 cd00116 LRR_RI Leucine-rich re 99.5 5.8E-15 1.2E-19 168.1 -0.5 37 845-881 250-291 (319)
28 PF13676 TIR_2: TIR domain; PD 99.4 3.7E-14 8.1E-19 131.2 3.1 87 24-116 1-87 (102)
29 PRK04841 transcriptional regul 99.4 9.9E-12 2.1E-16 162.3 25.1 298 187-505 9-335 (903)
30 PRK00411 cdc6 cell division co 99.2 1.2E-09 2.7E-14 127.9 23.5 282 190-483 28-358 (394)
31 TIGR00635 ruvB Holliday juncti 99.1 9.5E-10 2.1E-14 124.0 17.7 267 192-486 4-292 (305)
32 KOG0532 Leucine-rich repeat (L 99.1 3.9E-12 8.4E-17 141.8 -2.2 171 703-879 98-271 (722)
33 COG4886 Leucine-rich repeat (L 99.1 7.7E-11 1.7E-15 138.2 7.5 196 685-885 97-294 (394)
34 KOG0532 Leucine-rich repeat (L 99.1 3.1E-12 6.7E-17 142.5 -4.0 202 692-900 60-271 (722)
35 PF01637 Arch_ATPase: Archaeal 99.1 2.6E-10 5.6E-15 123.4 11.1 196 194-394 1-233 (234)
36 KOG1259 Nischarin, modulator o 99.1 2.5E-11 5.4E-16 124.8 2.4 205 742-959 206-413 (490)
37 PRK00080 ruvB Holliday junctio 99.1 8.5E-10 1.8E-14 125.1 13.3 261 188-486 21-313 (328)
38 COG4886 Leucine-rich repeat (L 99.0 2.5E-10 5.4E-15 133.9 7.3 202 662-868 97-300 (394)
39 TIGR02928 orc1/cdc6 family rep 99.0 2.8E-08 6E-13 115.3 23.5 248 189-447 12-300 (365)
40 COG2909 MalT ATP-dependent tra 99.0 7.1E-09 1.5E-13 122.4 18.0 296 187-506 14-342 (894)
41 PF05729 NACHT: NACHT domain 99.0 3.8E-09 8.3E-14 107.4 12.4 143 216-364 1-163 (166)
42 COG3899 Predicted ATPase [Gene 99.0 7.5E-09 1.6E-13 129.9 17.1 328 193-531 1-407 (849)
43 KOG1259 Nischarin, modulator o 99.0 1.6E-10 3.4E-15 119.0 1.8 104 773-880 283-386 (490)
44 KOG3207 Beta-tubulin folding c 98.9 1.5E-10 3.3E-15 125.7 0.2 107 773-880 196-313 (505)
45 KOG3207 Beta-tubulin folding c 98.9 1.5E-10 3.3E-15 125.7 -0.7 161 722-882 168-340 (505)
46 TIGR03015 pepcterm_ATPase puta 98.9 7.9E-08 1.7E-12 106.4 19.6 178 215-399 43-242 (269)
47 PF14580 LRR_9: Leucine-rich r 98.9 2.2E-09 4.7E-14 107.7 5.4 105 774-882 19-127 (175)
48 KOG4658 Apoptotic ATPase [Sign 98.9 1.2E-09 2.7E-14 136.2 4.3 216 705-925 547-780 (889)
49 PF14580 LRR_9: Leucine-rich r 98.9 2E-09 4.4E-14 107.8 4.8 126 724-877 17-149 (175)
50 KOG1909 Ran GTPase-activating 98.8 5.5E-10 1.2E-14 118.5 -1.6 192 746-957 88-310 (382)
51 KOG1909 Ran GTPase-activating 98.8 4.7E-10 1E-14 118.9 -2.7 225 655-880 27-310 (382)
52 PRK06893 DNA replication initi 98.8 1.2E-07 2.6E-12 101.4 14.6 153 215-398 39-206 (229)
53 COG2256 MGS1 ATPase related to 98.7 1.5E-07 3.2E-12 102.6 13.9 172 190-391 22-208 (436)
54 COG3903 Predicted ATPase [Gene 98.7 1.7E-08 3.8E-13 110.7 4.7 281 213-503 12-315 (414)
55 PTZ00112 origin recognition co 98.7 7.7E-07 1.7E-11 106.2 18.3 245 189-445 752-1030(1164)
56 TIGR03420 DnaA_homol_Hda DnaA 98.5 1.2E-06 2.6E-11 94.1 15.2 175 191-398 14-204 (226)
57 PRK15386 type III secretion pr 98.5 3.6E-07 7.8E-12 102.5 10.6 164 723-933 49-218 (426)
58 PRK13342 recombination factor 98.5 1.7E-06 3.8E-11 101.2 16.5 180 188-397 8-198 (413)
59 KOG0531 Protein phosphatase 1, 98.5 1.7E-08 3.7E-13 118.5 -0.8 172 703-882 95-269 (414)
60 KOG3678 SARM protein (with ste 98.5 6.3E-07 1.4E-11 97.5 11.0 144 18-188 609-761 (832)
61 PLN03150 hypothetical protein; 98.4 3.5E-07 7.6E-12 112.4 8.5 104 705-808 420-526 (623)
62 KOG0531 Protein phosphatase 1, 98.4 2.1E-08 4.5E-13 117.8 -2.7 218 630-881 70-290 (414)
63 PRK07003 DNA polymerase III su 98.4 6E-06 1.3E-10 98.6 17.7 193 188-394 12-220 (830)
64 PLN03150 hypothetical protein; 98.4 5E-07 1.1E-11 111.1 9.0 65 818-882 462-529 (623)
65 PRK04195 replication factor C 98.4 6.5E-06 1.4E-10 98.4 17.9 185 186-396 8-203 (482)
66 PF05496 RuvB_N: Holliday junc 98.4 2.6E-06 5.6E-11 87.3 12.1 176 187-394 19-220 (233)
67 PRK12402 replication factor C 98.4 4.4E-06 9.5E-11 95.8 15.5 202 187-394 10-225 (337)
68 PRK14961 DNA polymerase III su 98.4 7.6E-06 1.6E-10 94.0 17.4 193 188-393 12-218 (363)
69 PF13173 AAA_14: AAA domain 98.4 1.4E-06 3E-11 84.1 9.4 120 215-356 2-127 (128)
70 TIGR01242 26Sp45 26S proteasom 98.4 2.8E-06 6.1E-11 97.9 13.4 175 189-389 119-328 (364)
71 PRK14960 DNA polymerase III su 98.4 5.6E-06 1.2E-10 97.9 15.5 194 188-393 11-217 (702)
72 PRK07471 DNA polymerase III su 98.4 2.3E-05 4.9E-10 89.2 20.0 202 187-396 14-239 (365)
73 PRK14963 DNA polymerase III su 98.4 9.7E-06 2.1E-10 96.0 17.6 194 188-392 10-214 (504)
74 PF13855 LRR_8: Leucine rich r 98.3 3.2E-07 6.8E-12 75.6 3.3 59 822-880 1-61 (61)
75 PF13401 AAA_22: AAA domain; P 98.3 1.9E-06 4.1E-11 83.7 9.4 114 214-333 3-125 (131)
76 PRK08903 DnaA regulatory inact 98.3 7.2E-06 1.6E-10 88.0 14.0 173 191-399 17-203 (227)
77 PRK08727 hypothetical protein; 98.3 1.7E-05 3.8E-10 85.0 16.6 169 191-392 18-201 (233)
78 COG1474 CDC6 Cdc6-related prot 98.3 2E-05 4.3E-10 89.5 17.6 245 189-447 14-291 (366)
79 PF13191 AAA_16: AAA ATPase do 98.3 1.3E-06 2.9E-11 90.5 7.4 50 193-242 1-51 (185)
80 PLN03025 replication factor C 98.3 4.9E-06 1.1E-10 94.0 12.5 185 186-391 7-196 (319)
81 COG2255 RuvB Holliday junction 98.3 5.6E-06 1.2E-10 86.2 11.5 260 188-488 22-316 (332)
82 PRK00440 rfc replication facto 98.3 2.5E-05 5.3E-10 88.9 18.2 186 187-393 12-201 (319)
83 PRK14949 DNA polymerase III su 98.3 1.3E-05 2.9E-10 97.7 16.5 186 188-393 12-218 (944)
84 PRK12323 DNA polymerase III su 98.3 7.8E-06 1.7E-10 96.4 14.0 200 187-394 11-224 (700)
85 cd00009 AAA The AAA+ (ATPases 98.3 6.9E-06 1.5E-10 81.3 11.4 123 195-335 1-131 (151)
86 PRK09087 hypothetical protein; 98.2 2.7E-05 5.9E-10 82.7 16.0 141 215-397 44-197 (226)
87 PRK14956 DNA polymerase III su 98.2 1.4E-05 3E-10 92.2 14.6 192 188-391 14-218 (484)
88 PRK05564 DNA polymerase III su 98.2 2.9E-05 6.4E-10 87.5 17.1 177 192-395 4-190 (313)
89 PTZ00202 tuzin; Provisional 98.2 6.2E-06 1.3E-10 91.8 11.0 188 159-362 221-432 (550)
90 KOG1859 Leucine-rich repeat pr 98.2 1.9E-08 4.2E-13 115.4 -8.7 178 651-834 102-291 (1096)
91 PF00308 Bac_DnaA: Bacterial d 98.2 4E-05 8.6E-10 81.2 16.8 162 213-396 32-209 (219)
92 KOG4341 F-box protein containi 98.2 1E-08 2.2E-13 111.2 -10.5 129 796-925 293-436 (483)
93 KOG2120 SCF ubiquitin ligase, 98.2 5.7E-08 1.2E-12 100.7 -5.0 170 611-784 187-373 (419)
94 PF13855 LRR_8: Leucine rich r 98.2 1.6E-06 3.4E-11 71.4 4.4 58 704-761 2-60 (61)
95 PRK14957 DNA polymerase III su 98.2 4.1E-05 8.8E-10 90.9 17.7 183 188-395 12-221 (546)
96 KOG1859 Leucine-rich repeat pr 98.2 1.4E-07 3.1E-12 108.5 -2.7 127 822-959 164-293 (1096)
97 PRK07940 DNA polymerase III su 98.2 3.5E-05 7.7E-10 88.3 16.3 178 191-395 4-213 (394)
98 PRK08691 DNA polymerase III su 98.2 1.7E-05 3.8E-10 94.8 14.1 195 187-393 11-218 (709)
99 PRK07994 DNA polymerase III su 98.2 2.2E-05 4.9E-10 94.4 15.2 195 188-395 12-220 (647)
100 PRK14962 DNA polymerase III su 98.2 2.6E-05 5.6E-10 91.7 15.4 186 188-397 10-221 (472)
101 KOG4341 F-box protein containi 98.2 4.7E-08 1E-12 106.2 -6.8 70 627-696 159-231 (483)
102 KOG2028 ATPase related to the 98.2 5.7E-06 1.2E-10 88.3 8.8 150 189-364 135-294 (554)
103 PRK06645 DNA polymerase III su 98.2 4.5E-05 9.7E-10 90.0 17.2 185 188-392 17-226 (507)
104 PRK05642 DNA replication initi 98.1 5.8E-05 1.3E-09 81.0 16.3 151 216-397 46-210 (234)
105 PRK15386 type III secretion pr 98.1 1.1E-05 2.4E-10 90.8 10.9 112 726-855 72-187 (426)
106 TIGR02397 dnaX_nterm DNA polym 98.1 5.2E-05 1.1E-09 87.6 17.0 185 188-396 10-219 (355)
107 PRK03992 proteasome-activating 98.1 4.9E-05 1.1E-09 87.9 16.5 172 190-388 129-336 (389)
108 PRK09112 DNA polymerase III su 98.1 4E-05 8.7E-10 86.7 15.2 197 187-396 18-241 (351)
109 PRK14964 DNA polymerase III su 98.1 4.5E-05 9.8E-10 89.2 15.7 181 188-392 9-214 (491)
110 PRK13341 recombination factor 98.1 4.5E-05 9.6E-10 93.9 16.4 173 188-391 24-213 (725)
111 PRK05896 DNA polymerase III su 98.1 4.3E-05 9.4E-10 90.6 15.6 192 187-390 11-215 (605)
112 PRK08084 DNA replication initi 98.1 5.3E-05 1.1E-09 81.4 14.9 172 192-396 22-210 (235)
113 PF14516 AAA_35: AAA-like doma 98.1 0.00049 1.1E-08 77.9 23.4 206 187-402 6-246 (331)
114 KOG2120 SCF ubiquitin ligase, 98.1 1E-07 2.3E-12 98.8 -6.4 173 703-901 185-375 (419)
115 PRK14951 DNA polymerase III su 98.0 7.1E-05 1.5E-09 90.0 16.0 195 188-393 12-223 (618)
116 PRK14087 dnaA chromosomal repl 98.0 0.0001 2.2E-09 86.6 16.6 167 215-399 141-323 (450)
117 KOG2982 Uncharacterized conser 98.0 1.5E-06 3.2E-11 90.4 0.7 182 773-962 70-266 (418)
118 TIGR00678 holB DNA polymerase 98.0 8.8E-05 1.9E-09 77.0 14.0 88 295-390 95-186 (188)
119 PRK14955 DNA polymerase III su 98.0 6.6E-05 1.4E-09 87.3 14.2 199 188-393 12-226 (397)
120 TIGR02903 spore_lon_C ATP-depe 98.0 0.00012 2.5E-09 89.5 16.9 206 188-398 150-398 (615)
121 PRK14958 DNA polymerase III su 98.0 7.1E-05 1.5E-09 89.0 14.5 182 188-393 12-218 (509)
122 TIGR02881 spore_V_K stage V sp 98.0 8.6E-05 1.9E-09 81.4 13.7 131 214-365 41-192 (261)
123 PRK14969 DNA polymerase III su 98.0 8.5E-05 1.8E-09 89.0 14.7 180 188-391 12-216 (527)
124 PHA02544 44 clamp loader, smal 97.9 5E-05 1.1E-09 86.1 11.7 152 186-362 15-171 (316)
125 PRK09111 DNA polymerase III su 97.9 0.00014 3E-09 87.8 15.5 197 188-395 20-233 (598)
126 KOG2982 Uncharacterized conser 97.9 4.6E-06 9.9E-11 86.9 2.4 183 703-885 71-266 (418)
127 PRK14970 DNA polymerase III su 97.9 0.00017 3.6E-09 83.5 15.5 182 188-392 13-206 (367)
128 PRK00149 dnaA chromosomal repl 97.9 0.00023 4.9E-09 84.6 16.8 178 194-393 125-320 (450)
129 PRK14088 dnaA chromosomal repl 97.9 0.00031 6.7E-09 82.6 17.3 159 215-394 130-304 (440)
130 TIGR03689 pup_AAA proteasome A 97.9 0.00013 2.8E-09 85.6 14.0 157 190-364 180-378 (512)
131 PRK07764 DNA polymerase III su 97.9 0.00022 4.7E-09 89.1 16.4 193 188-392 11-218 (824)
132 PTZ00361 26 proteosome regulat 97.9 6.3E-05 1.4E-09 87.1 10.9 156 189-366 180-369 (438)
133 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.8E-10 60.4 3.4 40 822-861 1-40 (44)
134 TIGR00362 DnaA chromosomal rep 97.9 0.00035 7.6E-09 81.9 17.0 158 215-394 136-309 (405)
135 PRK07133 DNA polymerase III su 97.8 0.00026 5.6E-09 85.9 15.9 193 187-391 13-215 (725)
136 TIGR03345 VI_ClpV1 type VI sec 97.8 0.0002 4.3E-09 90.6 15.7 193 171-388 169-389 (852)
137 PRK14959 DNA polymerase III su 97.8 0.00023 5E-09 85.0 15.2 198 188-399 12-225 (624)
138 KOG0989 Replication factor C, 97.8 0.00055 1.2E-08 72.6 15.9 184 187-388 31-223 (346)
139 PRK08451 DNA polymerase III su 97.8 0.00034 7.3E-09 82.7 16.2 187 188-395 10-218 (535)
140 COG5238 RNA1 Ran GTPase-activa 97.8 1E-05 2.2E-10 83.3 3.0 137 745-881 87-255 (388)
141 TIGR02639 ClpA ATP-dependent C 97.8 0.00022 4.7E-09 89.7 15.6 169 171-364 164-358 (731)
142 PTZ00454 26S protease regulato 97.8 0.00032 7E-09 80.8 15.7 174 189-388 142-350 (398)
143 PRK14952 DNA polymerase III su 97.8 0.00042 9.1E-09 83.2 17.2 196 188-395 9-220 (584)
144 PRK06305 DNA polymerase III su 97.8 0.00048 1E-08 81.0 17.4 181 188-390 13-217 (451)
145 PRK14954 DNA polymerase III su 97.8 0.00045 9.7E-09 83.6 16.9 196 188-390 12-223 (620)
146 PF08937 DUF1863: MTH538 TIR-l 97.8 4.2E-05 9.2E-10 73.8 6.5 88 22-114 1-106 (130)
147 PRK06620 hypothetical protein; 97.8 0.00012 2.7E-09 77.0 10.5 134 216-393 45-187 (214)
148 PRK14950 DNA polymerase III su 97.8 0.00042 9E-09 84.7 16.2 197 188-396 12-222 (585)
149 PRK14953 DNA polymerase III su 97.8 0.00062 1.3E-08 80.6 17.0 196 188-396 12-221 (486)
150 PRK12422 chromosomal replicati 97.8 0.00059 1.3E-08 79.9 16.5 151 216-388 142-306 (445)
151 PRK14948 DNA polymerase III su 97.7 0.00071 1.5E-08 82.4 17.3 197 188-395 12-222 (620)
152 COG1222 RPT1 ATP-dependent 26S 97.7 0.00021 4.6E-09 77.2 10.7 151 192-368 151-339 (406)
153 PF05673 DUF815: Protein of un 97.7 0.0017 3.6E-08 68.0 16.8 56 188-243 23-80 (249)
154 KOG2227 Pre-initiation complex 97.7 0.00072 1.6E-08 75.7 14.9 172 189-364 147-338 (529)
155 PRK14971 DNA polymerase III su 97.7 0.0017 3.7E-08 79.2 19.4 180 188-392 13-219 (614)
156 PRK09376 rho transcription ter 97.7 5E-05 1.1E-09 84.6 5.7 95 214-310 168-270 (416)
157 KOG4579 Leucine-rich repeat (L 97.7 3.3E-06 7.2E-11 78.0 -3.1 61 820-880 75-135 (177)
158 PRK06647 DNA polymerase III su 97.7 0.0013 2.8E-08 79.3 17.8 190 188-393 12-218 (563)
159 CHL00176 ftsH cell division pr 97.7 0.00082 1.8E-08 81.9 16.2 173 190-387 181-386 (638)
160 PRK07399 DNA polymerase III su 97.7 0.0037 8E-08 69.9 20.2 193 192-396 4-222 (314)
161 CHL00195 ycf46 Ycf46; Provisio 97.6 0.0018 3.8E-08 76.5 18.3 175 191-388 227-428 (489)
162 PRK14086 dnaA chromosomal repl 97.6 0.0011 2.5E-08 78.8 16.6 155 216-392 315-485 (617)
163 CHL00095 clpC Clp protease ATP 97.6 0.00057 1.2E-08 87.0 14.6 168 171-362 161-352 (821)
164 PRK10865 protein disaggregatio 97.6 0.0011 2.3E-08 84.5 16.8 170 171-364 160-354 (857)
165 PRK05563 DNA polymerase III su 97.6 0.0018 3.8E-08 78.4 17.2 192 188-392 12-217 (559)
166 TIGR02880 cbbX_cfxQ probable R 97.6 0.002 4.2E-08 71.3 16.2 128 217-364 60-208 (284)
167 KOG3665 ZYG-1-like serine/thre 97.5 3E-05 6.4E-10 95.1 1.6 151 726-877 122-284 (699)
168 PRK08116 hypothetical protein; 97.5 0.00047 1E-08 75.3 10.6 102 216-334 115-221 (268)
169 KOG2543 Origin recognition com 97.5 0.0033 7.1E-08 68.8 16.5 166 191-363 5-192 (438)
170 CHL00181 cbbX CbbX; Provisiona 97.5 0.0025 5.5E-08 70.4 16.3 130 216-365 60-210 (287)
171 PRK05707 DNA polymerase III su 97.5 0.002 4.3E-08 72.4 15.6 92 298-395 108-203 (328)
172 PF12799 LRR_4: Leucine Rich r 97.5 9.8E-05 2.1E-09 55.6 3.4 37 845-881 1-37 (44)
173 TIGR03346 chaperone_ClpB ATP-d 97.5 0.0012 2.6E-08 84.4 15.5 154 189-364 170-349 (852)
174 KOG4579 Leucine-rich repeat (L 97.5 6.8E-06 1.5E-10 76.0 -3.7 88 774-863 53-141 (177)
175 TIGR01241 FtsH_fam ATP-depende 97.5 0.0013 2.9E-08 79.1 14.5 180 190-394 53-266 (495)
176 cd01128 rho_factor Transcripti 97.5 6.8E-05 1.5E-09 80.4 3.1 94 214-309 15-116 (249)
177 PF05621 TniB: Bacterial TniB 97.5 0.0021 4.5E-08 69.5 14.3 197 193-393 35-259 (302)
178 KOG1644 U2-associated snRNP A' 97.5 0.00023 4.9E-09 70.8 6.2 83 773-855 63-150 (233)
179 PRK11034 clpA ATP-dependent Cl 97.4 0.00095 2.1E-08 82.9 13.1 153 191-364 185-362 (758)
180 COG1373 Predicted ATPase (AAA+ 97.4 0.0012 2.7E-08 76.4 13.2 148 217-395 39-192 (398)
181 PRK14965 DNA polymerase III su 97.4 0.0016 3.5E-08 79.2 14.5 192 188-395 12-221 (576)
182 KOG3665 ZYG-1-like serine/thre 97.4 8.4E-05 1.8E-09 91.2 3.5 129 750-881 122-263 (699)
183 PF00004 AAA: ATPase family as 97.4 0.0012 2.5E-08 64.0 10.6 23 218-240 1-23 (132)
184 TIGR00767 rho transcription te 97.4 0.0003 6.5E-09 79.0 6.9 95 214-310 167-269 (415)
185 KOG1644 U2-associated snRNP A' 97.4 0.00033 7.2E-09 69.7 6.3 102 775-878 43-150 (233)
186 COG5238 RNA1 Ran GTPase-activa 97.3 5.5E-05 1.2E-09 78.1 0.0 214 655-879 27-283 (388)
187 COG0593 DnaA ATPase involved i 97.3 0.006 1.3E-07 69.3 16.0 133 214-365 112-258 (408)
188 TIGR00602 rad24 checkpoint pro 97.3 0.001 2.2E-08 80.4 10.5 55 186-240 78-135 (637)
189 KOG0991 Replication factor C, 97.3 0.0018 3.9E-08 65.6 10.2 52 186-239 21-72 (333)
190 PRK08181 transposase; Validate 97.3 0.00098 2.1E-08 72.4 9.1 34 216-249 107-140 (269)
191 PRK12377 putative replication 97.3 0.0013 2.7E-08 70.6 9.7 35 215-249 101-135 (248)
192 PRK11034 clpA ATP-dependent Cl 97.2 0.02 4.4E-07 71.3 21.3 49 192-240 458-513 (758)
193 COG3267 ExeA Type II secretory 97.2 0.011 2.3E-07 61.8 15.7 197 194-397 30-247 (269)
194 smart00382 AAA ATPases associa 97.2 0.00078 1.7E-08 65.9 7.4 34 216-249 3-36 (148)
195 PRK09183 transposase/IS protei 97.2 0.0013 2.8E-08 71.6 9.2 35 215-249 102-136 (259)
196 TIGR01243 CDC48 AAA family ATP 97.2 0.0038 8.2E-08 78.9 14.7 174 190-389 176-381 (733)
197 COG0466 Lon ATP-dependent Lon 97.2 0.0071 1.5E-07 71.6 15.3 158 192-365 323-509 (782)
198 PRK06526 transposase; Provisio 97.1 0.0036 7.7E-08 67.7 11.6 34 215-248 98-131 (254)
199 TIGR01243 CDC48 AAA family ATP 97.1 0.0047 1E-07 78.1 14.3 172 191-388 452-656 (733)
200 PRK10865 protein disaggregatio 97.1 0.0068 1.5E-07 77.3 15.2 51 191-241 567-624 (857)
201 TIGR00763 lon ATP-dependent pr 97.0 0.01 2.2E-07 75.3 16.4 52 192-243 320-375 (775)
202 PF08357 SEFIR: SEFIR domain; 97.0 0.00076 1.6E-08 67.1 5.1 64 23-86 2-70 (150)
203 PRK08769 DNA polymerase III su 97.0 0.019 4.1E-07 64.1 16.4 93 296-396 113-209 (319)
204 PRK07952 DNA replication prote 97.0 0.0036 7.9E-08 66.9 10.4 35 215-249 99-133 (244)
205 PRK08058 DNA polymerase III su 97.0 0.013 2.8E-07 66.3 15.5 157 193-362 6-180 (329)
206 TIGR02640 gas_vesic_GvpN gas v 97.0 0.018 3.8E-07 63.1 15.5 24 217-240 23-46 (262)
207 PRK06921 hypothetical protein; 97.0 0.0014 3E-08 71.5 6.8 36 215-250 117-153 (266)
208 KOG0741 AAA+-type ATPase [Post 97.0 0.022 4.8E-07 64.8 15.9 130 213-363 536-685 (744)
209 KOG0735 AAA+-type ATPase [Post 96.9 0.012 2.6E-07 69.2 14.1 161 215-396 431-617 (952)
210 COG1223 Predicted ATPase (AAA+ 96.9 0.013 2.7E-07 60.7 12.8 171 192-388 121-318 (368)
211 KOG0730 AAA+-type ATPase [Post 96.9 0.012 2.7E-07 69.0 14.2 146 193-367 435-618 (693)
212 COG2607 Predicted ATPase (AAA+ 96.9 0.0089 1.9E-07 61.4 11.3 57 189-245 57-115 (287)
213 PLN00020 ribulose bisphosphate 96.9 0.024 5.3E-07 62.9 15.5 151 213-390 146-333 (413)
214 COG0542 clpA ATP-binding subun 96.9 0.0038 8.2E-08 76.0 10.2 119 192-320 491-619 (786)
215 PF01695 IstB_IS21: IstB-like 96.9 0.0012 2.6E-08 67.3 5.3 34 216-249 48-81 (178)
216 TIGR02639 ClpA ATP-dependent C 96.9 0.046 9.9E-07 69.1 20.2 50 191-240 453-509 (731)
217 PRK11889 flhF flagellar biosyn 96.9 0.019 4.1E-07 64.6 14.5 36 214-249 240-275 (436)
218 PRK10536 hypothetical protein; 96.9 0.0037 8E-08 66.3 8.5 54 191-248 54-109 (262)
219 PRK06090 DNA polymerase III su 96.8 0.033 7.1E-07 62.1 16.4 90 296-395 108-201 (319)
220 COG2812 DnaX DNA polymerase II 96.8 0.029 6.3E-07 65.8 16.5 184 188-389 12-214 (515)
221 PRK14974 cell division protein 96.8 0.01 2.2E-07 66.6 12.4 29 214-242 139-167 (336)
222 PRK11331 5-methylcytosine-spec 96.8 0.0032 7E-08 72.2 8.2 106 192-309 175-285 (459)
223 KOG2739 Leucine-rich acidic nu 96.8 0.00098 2.1E-08 69.5 3.6 106 820-951 41-149 (260)
224 KOG2739 Leucine-rich acidic nu 96.8 0.00043 9.2E-09 72.1 0.7 66 817-882 60-130 (260)
225 KOG2228 Origin recognition com 96.8 0.011 2.4E-07 63.7 11.1 174 190-364 22-219 (408)
226 TIGR03346 chaperone_ClpB ATP-d 96.8 0.047 1E-06 70.1 19.1 50 192-241 565-621 (852)
227 PHA00729 NTP-binding motif con 96.7 0.0037 7.9E-08 65.3 7.4 27 214-240 16-42 (226)
228 COG0488 Uup ATPase components 96.7 0.034 7.4E-07 66.3 16.5 56 289-350 450-511 (530)
229 PF10443 RNA12: RNA12 protein; 96.7 0.25 5.5E-06 56.2 22.3 102 296-401 148-284 (431)
230 PRK10787 DNA-binding ATP-depen 96.7 0.0084 1.8E-07 75.3 11.8 157 192-364 322-506 (784)
231 PRK07993 DNA polymerase III su 96.7 0.038 8.2E-07 62.4 15.9 92 295-393 107-202 (334)
232 KOG0733 Nuclear AAA ATPase (VC 96.7 0.012 2.6E-07 68.0 11.5 53 191-243 189-251 (802)
233 PRK00771 signal recognition pa 96.7 0.035 7.6E-07 64.6 15.6 29 214-242 94-122 (437)
234 KOG0734 AAA+-type ATPase conta 96.7 0.012 2.6E-07 66.9 11.2 148 191-364 303-484 (752)
235 PRK06871 DNA polymerase III su 96.7 0.044 9.5E-07 61.3 15.8 91 295-392 106-200 (325)
236 PRK08939 primosomal protein Dn 96.7 0.0081 1.8E-07 66.8 9.8 36 214-249 155-190 (306)
237 TIGR00064 ftsY signal recognit 96.6 0.0095 2.1E-07 65.2 10.2 37 213-249 70-106 (272)
238 TIGR03345 VI_ClpV1 type VI sec 96.6 0.008 1.7E-07 76.4 10.6 50 192-241 566-622 (852)
239 PRK08118 topology modulation p 96.6 0.0016 3.5E-08 65.8 3.3 32 217-248 3-37 (167)
240 COG0470 HolB ATPase involved i 96.5 0.015 3.2E-07 66.2 11.4 138 193-350 2-167 (325)
241 PRK06835 DNA replication prote 96.5 0.0051 1.1E-07 68.9 7.2 34 216-249 184-217 (329)
242 PRK06964 DNA polymerase III su 96.5 0.1 2.2E-06 58.8 17.5 91 296-396 132-226 (342)
243 cd01131 PilT Pilus retraction 96.5 0.0073 1.6E-07 63.0 7.9 111 216-337 2-112 (198)
244 PF04665 Pox_A32: Poxvirus A32 96.5 0.002 4.3E-08 68.0 3.6 33 217-249 15-47 (241)
245 cd00561 CobA_CobO_BtuR ATP:cor 96.5 0.0057 1.2E-07 60.4 6.4 118 216-335 3-139 (159)
246 smart00763 AAA_PrkA PrkA AAA d 96.5 0.0021 4.5E-08 71.7 3.8 48 193-240 52-103 (361)
247 PRK04296 thymidine kinase; Pro 96.5 0.0048 1E-07 63.9 6.3 111 216-335 3-117 (190)
248 KOG1514 Origin recognition com 96.5 0.049 1.1E-06 64.5 14.7 200 190-395 394-621 (767)
249 KOG0731 AAA+-type ATPase conta 96.4 0.04 8.7E-07 66.8 14.4 175 190-392 309-521 (774)
250 PRK09361 radB DNA repair and r 96.4 0.0055 1.2E-07 65.6 6.6 49 202-250 10-58 (225)
251 COG1484 DnaC DNA replication p 96.4 0.0098 2.1E-07 64.4 8.5 36 214-249 104-139 (254)
252 cd01120 RecA-like_NTPases RecA 96.4 0.015 3.3E-07 58.4 9.5 34 217-250 1-34 (165)
253 PF13207 AAA_17: AAA domain; P 96.4 0.0029 6.3E-08 60.2 3.7 23 217-239 1-23 (121)
254 PF13177 DNA_pol3_delta2: DNA 96.4 0.026 5.6E-07 56.7 10.7 138 196-352 1-162 (162)
255 COG1618 Predicted nucleotide k 96.3 0.0035 7.6E-08 60.3 3.8 38 216-253 6-45 (179)
256 PRK12724 flagellar biosynthesi 96.3 0.073 1.6E-06 60.8 14.9 25 215-239 223-247 (432)
257 cd01394 radB RadB. The archaea 96.3 0.011 2.4E-07 62.9 8.2 50 201-250 5-54 (218)
258 KOG1947 Leucine rich repeat pr 96.3 0.00029 6.2E-09 85.2 -4.8 37 631-667 187-223 (482)
259 TIGR02902 spore_lonB ATP-depen 96.3 0.027 5.9E-07 68.0 12.1 50 188-239 61-110 (531)
260 PRK04132 replication factor C 96.3 0.036 7.8E-07 69.2 13.2 152 223-394 574-730 (846)
261 COG0542 clpA ATP-binding subun 96.3 0.023 4.9E-07 69.5 11.1 154 190-363 168-345 (786)
262 cd01121 Sms Sms (bacterial rad 96.2 0.014 3.1E-07 66.6 8.8 50 201-250 68-117 (372)
263 KOG0744 AAA+-type ATPase [Post 96.2 0.013 2.8E-07 62.7 7.4 36 214-249 176-215 (423)
264 KOG0733 Nuclear AAA ATPase (VC 96.2 0.023 5E-07 65.8 9.9 127 216-365 546-693 (802)
265 COG1066 Sms Predicted ATP-depe 96.2 0.021 4.5E-07 63.6 9.2 100 199-306 77-178 (456)
266 PRK06067 flagellar accessory p 96.2 0.021 4.6E-07 61.4 9.4 50 201-250 11-60 (234)
267 PRK07261 topology modulation p 96.2 0.014 2.9E-07 59.4 7.4 23 217-239 2-24 (171)
268 KOG1947 Leucine rich repeat pr 96.1 0.00052 1.1E-08 83.0 -3.7 34 870-903 403-441 (482)
269 TIGR01425 SRP54_euk signal rec 96.1 0.11 2.3E-06 60.1 15.2 29 214-242 99-127 (429)
270 PRK05541 adenylylsulfate kinas 96.1 0.025 5.4E-07 57.9 9.3 36 214-249 6-41 (176)
271 KOG0728 26S proteasome regulat 96.1 0.09 1.9E-06 54.1 12.7 143 196-364 151-331 (404)
272 PF07693 KAP_NTPase: KAP famil 96.1 0.12 2.7E-06 58.7 15.8 44 199-242 3-47 (325)
273 TIGR02237 recomb_radB DNA repa 96.1 0.01 2.2E-07 62.7 6.4 45 207-251 4-48 (209)
274 PRK10733 hflB ATP-dependent me 96.1 0.046 9.9E-07 67.7 12.8 128 217-366 187-337 (644)
275 PF07728 AAA_5: AAA domain (dy 96.1 0.0041 9E-08 60.9 3.0 22 218-239 2-23 (139)
276 PF14532 Sigma54_activ_2: Sigm 96.1 0.0057 1.2E-07 59.8 3.9 44 195-238 1-44 (138)
277 PF02562 PhoH: PhoH-like prote 96.0 0.029 6.3E-07 58.0 9.0 126 197-334 5-156 (205)
278 PRK08699 DNA polymerase III su 96.0 0.043 9.4E-07 61.7 11.2 83 299-391 116-202 (325)
279 COG0464 SpoVK ATPases of the A 96.0 0.049 1.1E-06 65.8 12.4 153 192-366 242-425 (494)
280 cd01133 F1-ATPase_beta F1 ATP 96.0 0.013 2.9E-07 63.2 6.6 41 214-254 68-108 (274)
281 KOG2123 Uncharacterized conser 96.0 0.0007 1.5E-08 70.4 -2.9 77 819-896 38-124 (388)
282 PRK12608 transcription termina 96.0 0.016 3.4E-07 65.1 7.4 103 204-309 123-233 (380)
283 PRK10867 signal recognition pa 96.0 0.12 2.6E-06 60.1 14.8 29 214-242 99-127 (433)
284 CHL00095 clpC Clp protease ATP 96.0 0.045 9.7E-07 70.0 12.5 133 192-334 509-662 (821)
285 KOG0651 26S proteasome regulat 95.9 0.026 5.6E-07 60.2 8.1 110 214-349 165-301 (388)
286 cd01393 recA_like RecA is a b 95.9 0.023 4.9E-07 60.9 8.1 49 202-250 6-60 (226)
287 PRK06696 uridine kinase; Valid 95.9 0.0093 2E-07 63.6 5.0 46 197-242 3-49 (223)
288 KOG0729 26S proteasome regulat 95.9 0.032 6.9E-07 57.8 8.4 54 194-252 179-243 (435)
289 KOG0652 26S proteasome regulat 95.9 0.16 3.4E-06 52.7 13.2 164 192-381 171-373 (424)
290 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.8 0.024 5.2E-07 55.8 7.3 113 214-348 25-140 (144)
291 PRK07667 uridine kinase; Provi 95.8 0.015 3.3E-07 60.4 6.1 42 201-242 3-44 (193)
292 TIGR01817 nifA Nif-specific re 95.8 0.095 2.1E-06 63.9 13.9 51 189-239 193-243 (534)
293 PRK10416 signal recognition pa 95.8 0.041 8.8E-07 61.6 9.7 29 214-242 113-141 (318)
294 TIGR00959 ffh signal recogniti 95.8 0.093 2E-06 61.0 12.9 26 215-240 99-124 (428)
295 PRK05973 replicative DNA helic 95.8 0.052 1.1E-06 57.7 9.7 37 213-249 62-98 (237)
296 PF00448 SRP54: SRP54-type pro 95.7 0.015 3.3E-07 60.2 5.6 34 216-249 2-35 (196)
297 PRK05703 flhF flagellar biosyn 95.7 0.17 3.7E-06 59.1 14.9 35 215-249 221-257 (424)
298 TIGR03878 thermo_KaiC_2 KaiC d 95.7 0.033 7.1E-07 60.8 8.4 38 213-250 34-71 (259)
299 KOG1969 DNA replication checkp 95.7 0.025 5.4E-07 67.0 7.6 78 212-309 323-400 (877)
300 PRK15455 PrkA family serine pr 95.7 0.011 2.4E-07 69.3 4.6 51 191-241 75-129 (644)
301 cd00983 recA RecA is a bacter 95.6 0.024 5.1E-07 63.0 7.0 52 200-251 39-91 (325)
302 TIGR00416 sms DNA repair prote 95.6 0.035 7.6E-07 65.4 8.7 53 198-250 77-129 (454)
303 KOG0727 26S proteasome regulat 95.6 0.16 3.4E-06 52.5 11.8 146 193-364 156-339 (408)
304 cd02027 APSK Adenosine 5'-phos 95.5 0.053 1.1E-06 53.7 8.4 24 217-240 1-24 (149)
305 PF01583 APS_kinase: Adenylyls 95.5 0.019 4E-07 56.6 5.0 34 216-249 3-36 (156)
306 cd01123 Rad51_DMC1_radA Rad51_ 95.5 0.022 4.9E-07 61.4 6.2 49 202-250 6-60 (235)
307 PRK12723 flagellar biosynthesi 95.5 0.14 3E-06 58.8 12.7 27 214-240 173-199 (388)
308 TIGR02012 tigrfam_recA protein 95.5 0.026 5.6E-07 62.7 6.7 51 201-251 40-91 (321)
309 TIGR00450 mnmE_trmE_thdF tRNA 95.5 0.048 1E-06 64.1 9.2 23 216-238 204-226 (442)
310 TIGR01359 UMP_CMP_kin_fam UMP- 95.5 0.1 2.2E-06 53.7 10.7 23 217-239 1-23 (183)
311 COG4088 Predicted nucleotide k 95.5 0.023 5.1E-07 56.9 5.4 29 216-244 2-30 (261)
312 PRK11823 DNA repair protein Ra 95.4 0.047 1E-06 64.3 9.0 51 200-250 65-115 (446)
313 KOG0743 AAA+-type ATPase [Post 95.4 0.12 2.5E-06 58.7 11.3 152 216-402 236-417 (457)
314 PRK09354 recA recombinase A; P 95.4 0.046 9.9E-07 61.3 8.2 52 200-251 44-96 (349)
315 PRK08533 flagellar accessory p 95.4 0.044 9.6E-07 58.6 7.8 47 203-249 12-58 (230)
316 PF13238 AAA_18: AAA domain; P 95.4 0.014 2.9E-07 56.1 3.5 22 218-239 1-22 (129)
317 TIGR03881 KaiC_arch_4 KaiC dom 95.3 0.1 2.3E-06 55.9 10.7 50 201-250 6-55 (229)
318 PF13306 LRR_5: Leucine rich r 95.3 0.051 1.1E-06 52.2 7.4 59 722-782 8-66 (129)
319 KOG2004 Mitochondrial ATP-depe 95.3 0.013 2.9E-07 68.9 3.8 52 192-243 411-466 (906)
320 cd03214 ABC_Iron-Siderophores_ 95.3 0.066 1.4E-06 55.0 8.6 132 214-348 24-171 (180)
321 PF13604 AAA_30: AAA domain; P 95.3 0.1 2.2E-06 54.3 10.1 39 201-242 7-45 (196)
322 PF00406 ADK: Adenylate kinase 95.3 0.097 2.1E-06 52.0 9.6 91 220-316 1-94 (151)
323 PRK11608 pspF phage shock prot 95.3 0.13 2.8E-06 58.2 11.5 46 192-237 6-51 (326)
324 cd01122 GP4d_helicase GP4d_hel 95.3 0.063 1.4E-06 59.3 8.9 54 213-272 28-82 (271)
325 COG0465 HflB ATP-dependent Zn 95.3 0.07 1.5E-06 63.5 9.5 151 190-365 148-334 (596)
326 cd00544 CobU Adenosylcobinamid 95.2 0.027 5.9E-07 56.8 5.3 79 218-305 2-82 (169)
327 COG0563 Adk Adenylate kinase a 95.2 0.053 1.1E-06 55.2 7.4 23 217-239 2-24 (178)
328 TIGR00708 cobA cob(I)alamin ad 95.2 0.064 1.4E-06 53.7 7.7 118 216-334 6-140 (173)
329 TIGR01420 pilT_fam pilus retra 95.2 0.041 9E-07 62.7 7.3 108 215-334 122-230 (343)
330 PRK13531 regulatory ATPase Rav 95.2 0.032 6.9E-07 64.8 6.2 45 192-240 20-64 (498)
331 PF07726 AAA_3: ATPase family 95.2 0.012 2.7E-07 55.1 2.3 29 218-246 2-30 (131)
332 cd01129 PulE-GspE PulE/GspE Th 95.2 0.054 1.2E-06 59.1 7.7 102 201-317 69-170 (264)
333 PF00485 PRK: Phosphoribulokin 95.1 0.018 3.9E-07 60.0 3.8 26 217-242 1-26 (194)
334 cd03223 ABCD_peroxisomal_ALDP 95.1 0.072 1.6E-06 53.8 8.1 128 214-349 26-161 (166)
335 PRK12337 2-phosphoglycerate ki 95.1 0.032 6.9E-07 64.3 5.9 26 214-239 254-279 (475)
336 TIGR02974 phageshock_pspF psp 95.1 0.15 3.3E-06 57.6 11.4 45 194-238 1-45 (329)
337 cd03216 ABC_Carb_Monos_I This 95.1 0.038 8.3E-07 55.7 5.9 127 214-348 25-155 (163)
338 PF13671 AAA_33: AAA domain; P 95.1 0.024 5.1E-07 55.7 4.3 24 217-240 1-24 (143)
339 KOG2035 Replication factor C, 95.1 0.53 1.2E-05 49.8 13.9 209 191-415 12-259 (351)
340 PRK05986 cob(I)alamin adenolsy 95.1 0.051 1.1E-06 55.2 6.6 118 215-334 22-158 (191)
341 TIGR03600 phage_DnaB phage rep 95.1 0.4 8.7E-06 56.6 15.3 73 193-272 173-246 (421)
342 cd03222 ABC_RNaseL_inhibitor T 95.1 0.067 1.4E-06 54.5 7.5 114 215-349 25-146 (177)
343 cd03115 SRP The signal recogni 95.0 0.044 9.5E-07 55.9 6.2 33 217-249 2-34 (173)
344 KOG0739 AAA+-type ATPase [Post 95.0 0.72 1.6E-05 49.2 14.8 172 192-389 133-335 (439)
345 TIGR03574 selen_PSTK L-seryl-t 95.0 0.071 1.5E-06 58.0 8.1 26 217-242 1-26 (249)
346 PRK12726 flagellar biosynthesi 95.0 0.38 8.3E-06 54.2 13.7 37 213-249 204-240 (407)
347 cd03228 ABCC_MRP_Like The MRP 95.0 0.093 2E-06 53.4 8.4 126 214-348 27-167 (171)
348 TIGR02858 spore_III_AA stage I 94.9 0.082 1.8E-06 57.6 8.3 116 214-337 110-232 (270)
349 PRK00889 adenylylsulfate kinas 94.9 0.045 9.9E-07 55.9 5.8 35 215-249 4-38 (175)
350 cd02019 NK Nucleoside/nucleoti 94.8 0.023 4.9E-07 47.9 2.9 23 217-239 1-23 (69)
351 CHL00206 ycf2 Ycf2; Provisiona 94.8 0.2 4.2E-06 66.5 12.3 26 214-239 1629-1654(2281)
352 PRK03839 putative kinase; Prov 94.8 0.021 4.5E-07 58.7 3.2 24 217-240 2-25 (180)
353 PRK15429 formate hydrogenlyase 94.8 0.094 2E-06 66.0 9.5 50 190-239 374-423 (686)
354 COG4608 AppF ABC-type oligopep 94.8 0.061 1.3E-06 57.2 6.5 125 213-340 37-176 (268)
355 KOG2123 Uncharacterized conser 94.8 0.0026 5.7E-08 66.3 -3.5 38 587-624 41-78 (388)
356 cd03247 ABCC_cytochrome_bd The 94.8 0.14 3E-06 52.5 9.1 126 214-349 27-170 (178)
357 cd01858 NGP_1 NGP-1. Autoanti 94.8 0.2 4.2E-06 50.2 10.0 49 68-118 2-50 (157)
358 PRK05342 clpX ATP-dependent pr 94.8 0.046 1E-06 63.4 6.1 26 216-241 109-134 (412)
359 PTZ00301 uridine kinase; Provi 94.8 0.027 5.9E-07 59.0 3.9 29 215-243 3-31 (210)
360 cd03238 ABC_UvrA The excision 94.8 0.15 3.2E-06 51.9 9.1 23 214-236 20-42 (176)
361 PF08433 KTI12: Chromatin asso 94.8 0.093 2E-06 57.2 8.1 27 216-242 2-28 (270)
362 PRK05800 cobU adenosylcobinami 94.7 0.27 5.9E-06 49.7 10.9 23 217-239 3-25 (170)
363 COG5635 Predicted NTPase (NACH 94.7 0.27 5.9E-06 63.0 13.5 226 217-447 224-482 (824)
364 PRK04040 adenylate kinase; Pro 94.7 0.03 6.6E-07 57.7 3.9 25 216-240 3-27 (188)
365 COG0703 AroK Shikimate kinase 94.7 0.054 1.2E-06 53.9 5.4 28 216-243 3-30 (172)
366 PRK00625 shikimate kinase; Pro 94.7 0.023 5.1E-07 57.5 3.0 24 217-240 2-25 (173)
367 PRK08233 hypothetical protein; 94.7 0.025 5.4E-07 58.2 3.3 26 215-240 3-28 (182)
368 PF00910 RNA_helicase: RNA hel 94.7 0.022 4.7E-07 52.8 2.6 26 218-243 1-26 (107)
369 COG1120 FepC ABC-type cobalami 94.6 0.11 2.5E-06 55.4 8.2 55 285-340 145-205 (258)
370 cd01125 repA Hexameric Replica 94.6 0.28 6E-06 53.0 11.5 24 217-240 3-26 (239)
371 TIGR02238 recomb_DMC1 meiotic 94.6 0.13 2.7E-06 57.6 8.9 50 201-250 82-137 (313)
372 COG0572 Udk Uridine kinase [Nu 94.6 0.037 7.9E-07 57.2 4.1 30 213-242 6-35 (218)
373 TIGR03499 FlhF flagellar biosy 94.6 0.11 2.3E-06 57.5 8.2 29 214-242 193-221 (282)
374 TIGR02655 circ_KaiC circadian 94.5 0.099 2.2E-06 62.6 8.5 52 198-249 246-297 (484)
375 PRK07132 DNA polymerase III su 94.5 1.7 3.8E-05 48.1 17.5 166 202-395 6-185 (299)
376 PF00560 LRR_1: Leucine Rich R 94.5 0.014 3E-07 36.6 0.6 19 847-865 2-20 (22)
377 cd03230 ABC_DR_subfamily_A Thi 94.5 0.11 2.3E-06 53.0 7.5 127 214-348 25-168 (173)
378 KOG0736 Peroxisome assembly fa 94.5 0.41 8.9E-06 57.5 12.8 144 192-358 672-850 (953)
379 PRK06762 hypothetical protein; 94.4 0.033 7.1E-07 56.4 3.6 24 216-239 3-26 (166)
380 TIGR01069 mutS2 MutS2 family p 94.4 0.054 1.2E-06 68.1 6.1 111 295-415 401-521 (771)
381 KOG3928 Mitochondrial ribosome 94.4 0.54 1.2E-05 52.6 12.9 56 344-399 404-460 (461)
382 PF03308 ArgK: ArgK protein; 94.4 0.1 2.2E-06 55.2 7.1 40 203-242 17-56 (266)
383 cd01130 VirB11-like_ATPase Typ 94.4 0.039 8.4E-07 57.0 4.1 93 215-315 25-119 (186)
384 COG2884 FtsE Predicted ATPase 94.4 0.13 2.9E-06 51.2 7.4 55 285-341 144-204 (223)
385 cd03246 ABCC_Protease_Secretio 94.4 0.15 3.2E-06 52.0 8.2 128 214-349 27-169 (173)
386 COG1121 ZnuC ABC-type Mn/Zn tr 94.4 0.14 3E-06 54.5 8.1 52 287-340 148-205 (254)
387 PRK05480 uridine/cytidine kina 94.4 0.037 8.1E-07 58.4 3.9 27 213-239 4-30 (209)
388 PRK08506 replicative DNA helic 94.3 0.3 6.6E-06 58.1 11.9 73 193-272 171-243 (472)
389 cd03281 ABC_MSH5_euk MutS5 hom 94.3 0.043 9.3E-07 57.9 4.2 23 215-237 29-51 (213)
390 PRK09270 nucleoside triphospha 94.3 0.053 1.2E-06 58.1 5.0 32 212-243 30-61 (229)
391 PRK05291 trmE tRNA modificatio 94.3 0.19 4.2E-06 59.4 10.1 22 216-237 216-237 (449)
392 KOG1970 Checkpoint RAD17-RFC c 94.3 0.17 3.6E-06 58.5 8.9 41 199-239 89-134 (634)
393 PRK00131 aroK shikimate kinase 94.2 0.036 7.8E-07 56.5 3.4 25 215-239 4-28 (175)
394 cd00267 ABC_ATPase ABC (ATP-bi 94.2 0.047 1E-06 54.7 4.1 124 215-349 25-154 (157)
395 cd03229 ABC_Class3 This class 94.2 0.11 2.4E-06 53.2 7.0 35 214-249 25-59 (178)
396 PRK14722 flhF flagellar biosyn 94.2 0.31 6.7E-06 55.5 10.9 30 214-243 136-165 (374)
397 PF13306 LRR_5: Leucine rich r 94.2 0.13 2.9E-06 49.2 7.0 97 705-806 14-112 (129)
398 PRK15115 response regulator Gl 94.2 3.9 8.4E-05 48.8 21.1 47 192-238 134-180 (444)
399 TIGR03877 thermo_KaiC_1 KaiC d 94.2 0.12 2.7E-06 55.6 7.5 50 201-250 7-56 (237)
400 COG1136 SalX ABC-type antimicr 94.2 0.22 4.7E-06 52.2 8.8 61 286-349 150-216 (226)
401 PTZ00088 adenylate kinase 1; P 94.2 0.2 4.3E-06 53.3 8.8 91 218-315 9-105 (229)
402 PRK12727 flagellar biosynthesi 94.2 0.16 3.4E-06 59.8 8.5 47 196-242 327-377 (559)
403 COG0467 RAD55 RecA-superfamily 94.1 0.11 2.4E-06 56.8 7.2 47 204-250 12-58 (260)
404 PF10236 DAP3: Mitochondrial r 94.1 1.9 4.2E-05 48.2 17.1 48 345-392 258-306 (309)
405 TIGR00235 udk uridine kinase. 94.1 0.044 9.6E-07 57.7 3.8 28 213-240 4-31 (207)
406 PF08423 Rad51: Rad51; InterP 94.1 0.05 1.1E-06 59.1 4.3 39 201-239 24-62 (256)
407 TIGR01360 aden_kin_iso1 adenyl 94.1 0.041 8.9E-07 56.9 3.5 26 214-239 2-27 (188)
408 COG0468 RecA RecA/RadA recombi 94.1 0.089 1.9E-06 57.1 6.0 48 203-250 48-95 (279)
409 TIGR00150 HI0065_YjeE ATPase, 94.0 0.062 1.4E-06 51.4 4.3 26 214-239 21-46 (133)
410 PF10137 TIR-like: Predicted n 94.0 0.12 2.6E-06 48.8 6.0 60 23-85 1-61 (125)
411 PF00437 T2SE: Type II/IV secr 94.0 0.04 8.7E-07 60.8 3.5 126 192-332 104-230 (270)
412 COG3854 SpoIIIAA ncharacterize 94.0 0.24 5.3E-06 50.8 8.5 111 216-334 138-253 (308)
413 cd03237 ABC_RNaseL_inhibitor_d 94.0 0.17 3.6E-06 54.8 8.0 25 214-238 24-48 (246)
414 TIGR02788 VirB11 P-type DNA tr 94.0 0.076 1.6E-06 59.6 5.6 109 214-334 143-253 (308)
415 PRK13947 shikimate kinase; Pro 94.0 0.039 8.4E-07 56.2 3.0 25 217-241 3-27 (171)
416 PF06068 TIP49: TIP49 C-termin 93.9 0.073 1.6E-06 59.1 5.1 60 190-249 22-84 (398)
417 PRK01184 hypothetical protein; 93.9 0.13 2.9E-06 53.0 6.9 21 216-237 2-22 (184)
418 TIGR00455 apsK adenylylsulfate 93.9 0.22 4.7E-06 51.4 8.4 28 214-241 17-44 (184)
419 TIGR02524 dot_icm_DotB Dot/Icm 93.9 0.08 1.7E-06 60.3 5.5 95 215-315 134-231 (358)
420 cd02021 GntK Gluconate kinase 93.9 0.21 4.6E-06 49.4 8.0 22 217-238 1-22 (150)
421 COG1224 TIP49 DNA helicase TIP 93.8 0.09 2E-06 57.3 5.4 58 189-246 36-96 (450)
422 cd03233 ABC_PDR_domain1 The pl 93.8 0.23 5E-06 52.0 8.5 27 214-240 32-58 (202)
423 PRK14528 adenylate kinase; Pro 93.8 0.24 5.3E-06 51.0 8.5 24 216-239 2-25 (186)
424 KOG1051 Chaperone HSP104 and r 93.8 0.4 8.6E-06 59.9 11.5 104 193-309 563-673 (898)
425 PRK06547 hypothetical protein; 93.8 0.058 1.2E-06 54.7 3.7 27 213-239 13-39 (172)
426 KOG0927 Predicted transporter 93.8 1 2.2E-05 52.3 13.7 35 204-238 405-439 (614)
427 COG0396 sufC Cysteine desulfur 93.7 0.24 5.3E-06 51.1 8.0 61 285-347 151-217 (251)
428 TIGR00390 hslU ATP-dependent p 93.7 0.11 2.5E-06 59.1 6.2 51 193-243 13-75 (441)
429 cd03232 ABC_PDR_domain2 The pl 93.7 0.22 4.7E-06 51.8 8.0 24 214-237 32-55 (192)
430 COG4618 ArpD ABC-type protease 93.7 0.33 7.1E-06 55.8 9.6 21 216-236 363-383 (580)
431 KOG4308 LRR-containing protein 93.6 0.00042 9.1E-09 81.5 -13.8 86 773-858 203-303 (478)
432 PHA02244 ATPase-like protein 93.6 0.14 3.1E-06 57.3 6.8 47 191-241 95-145 (383)
433 cd00227 CPT Chloramphenicol (C 93.6 0.055 1.2E-06 55.3 3.4 25 216-240 3-27 (175)
434 PF13481 AAA_25: AAA domain; P 93.6 0.3 6.6E-06 50.7 9.0 26 216-241 33-58 (193)
435 PRK06731 flhF flagellar biosyn 93.6 0.78 1.7E-05 50.0 12.2 36 214-249 74-109 (270)
436 PRK10463 hydrogenase nickel in 93.6 0.15 3.2E-06 55.6 6.6 43 204-248 95-137 (290)
437 PF03266 NTPase_1: NTPase; In 93.6 0.059 1.3E-06 54.3 3.3 24 218-241 2-25 (168)
438 KOG0740 AAA+-type ATPase [Post 93.5 0.84 1.8E-05 52.3 12.8 30 213-242 184-213 (428)
439 PRK00279 adk adenylate kinase; 93.5 0.34 7.4E-06 51.3 9.4 23 217-239 2-24 (215)
440 PRK09165 replicative DNA helic 93.5 0.36 7.8E-06 57.9 10.4 48 194-242 197-244 (497)
441 KOG4308 LRR-containing protein 93.5 0.00087 1.9E-08 78.9 -11.5 69 719-787 108-185 (478)
442 PRK14723 flhF flagellar biosyn 93.5 0.41 8.8E-06 59.2 10.9 26 215-240 185-210 (767)
443 cd01857 HSR1_MMR1 HSR1/MMR1. 93.5 0.56 1.2E-05 45.9 10.1 51 66-118 3-53 (141)
444 PRK05201 hslU ATP-dependent pr 93.5 0.12 2.7E-06 58.8 6.0 51 193-243 16-78 (443)
445 PRK08006 replicative DNA helic 93.4 0.48 1E-05 56.2 11.2 72 194-272 204-276 (471)
446 COG2019 AdkA Archaeal adenylat 93.4 0.076 1.6E-06 51.7 3.6 25 215-239 4-28 (189)
447 PRK13539 cytochrome c biogenes 93.4 0.2 4.3E-06 52.7 7.3 25 214-238 27-51 (207)
448 PRK05022 anaerobic nitric oxid 93.4 0.13 2.8E-06 62.2 6.4 50 190-239 185-234 (509)
449 TIGR01351 adk adenylate kinase 93.4 0.28 6.1E-06 51.7 8.3 22 218-239 2-23 (210)
450 cd03240 ABC_Rad50 The catalyti 93.4 0.36 7.8E-06 50.6 9.0 59 289-349 132-196 (204)
451 PF00560 LRR_1: Leucine Rich R 93.4 0.025 5.5E-07 35.4 0.2 21 823-843 1-21 (22)
452 PF00154 RecA: recA bacterial 93.3 0.22 4.7E-06 55.3 7.5 103 198-309 35-144 (322)
453 cd03289 ABCC_CFTR2 The CFTR su 93.3 0.43 9.3E-06 52.5 9.8 34 214-249 29-62 (275)
454 COG1428 Deoxynucleoside kinase 93.3 0.064 1.4E-06 54.7 3.0 26 215-240 4-29 (216)
455 cd01428 ADK Adenylate kinase ( 93.3 0.55 1.2E-05 48.7 10.3 22 218-239 2-23 (194)
456 PRK13949 shikimate kinase; Pro 93.3 0.063 1.4E-06 54.4 3.1 24 217-240 3-26 (169)
457 COG0529 CysC Adenylylsulfate k 93.3 0.12 2.5E-06 51.0 4.7 37 213-249 21-57 (197)
458 cd02028 UMPK_like Uridine mono 93.2 0.086 1.9E-06 54.0 4.0 26 217-242 1-26 (179)
459 COG0003 ArsA Predicted ATPase 93.2 0.095 2E-06 58.3 4.6 35 215-249 2-36 (322)
460 PRK03846 adenylylsulfate kinas 93.2 0.11 2.4E-06 54.3 4.9 37 213-249 22-58 (198)
461 PLN03187 meiotic recombination 93.2 0.16 3.5E-06 57.2 6.5 50 201-250 112-167 (344)
462 KOG0735 AAA+-type ATPase [Post 93.2 1.1 2.3E-05 53.7 12.9 171 193-389 668-870 (952)
463 COG1703 ArgK Putative periplas 93.2 0.11 2.3E-06 55.8 4.6 42 202-243 38-79 (323)
464 cd00984 DnaB_C DnaB helicase C 93.2 0.41 8.8E-06 51.8 9.4 53 213-271 11-64 (242)
465 PRK06217 hypothetical protein; 93.1 0.074 1.6E-06 54.8 3.3 24 217-240 3-26 (183)
466 cd03217 ABC_FeS_Assembly ABC-t 93.1 0.35 7.7E-06 50.5 8.5 25 214-238 25-49 (200)
467 cd01124 KaiC KaiC is a circadi 93.1 0.15 3.3E-06 52.6 5.7 32 218-249 2-33 (187)
468 PF06745 KaiC: KaiC; InterPro 93.1 0.11 2.5E-06 55.5 4.8 48 203-250 7-55 (226)
469 PF01078 Mg_chelatase: Magnesi 93.1 0.11 2.3E-06 53.5 4.3 43 191-237 2-44 (206)
470 COG1102 Cmk Cytidylate kinase 93.1 0.07 1.5E-06 51.7 2.7 26 217-242 2-27 (179)
471 TIGR03575 selen_PSTK_euk L-ser 93.0 0.26 5.6E-06 55.4 7.7 23 218-240 2-24 (340)
472 cd02024 NRK1 Nicotinamide ribo 93.0 0.064 1.4E-06 55.0 2.6 23 217-239 1-23 (187)
473 PRK10923 glnG nitrogen regulat 93.0 0.69 1.5E-05 55.6 12.0 47 192-238 138-184 (469)
474 cd02025 PanK Pantothenate kina 93.0 0.068 1.5E-06 56.7 2.9 24 217-240 1-24 (220)
475 PF07724 AAA_2: AAA domain (Cd 93.0 0.091 2E-06 53.2 3.7 33 215-247 3-36 (171)
476 COG3910 Predicted ATPase [Gene 92.9 0.62 1.3E-05 46.5 9.0 63 286-350 137-203 (233)
477 cd03253 ABCC_ATM1_transporter 92.9 0.52 1.1E-05 50.7 9.8 25 214-238 26-50 (236)
478 COG1875 NYN ribonuclease and A 92.9 0.3 6.4E-06 53.7 7.5 25 212-236 242-266 (436)
479 cd02020 CMPK Cytidine monophos 92.9 0.069 1.5E-06 52.6 2.7 23 217-239 1-23 (147)
480 cd00464 SK Shikimate kinase (S 92.9 0.076 1.6E-06 52.9 3.0 22 218-239 2-23 (154)
481 cd03215 ABC_Carb_Monos_II This 92.9 0.47 1E-05 48.8 9.0 26 214-239 25-50 (182)
482 cd03244 ABCC_MRP_domain2 Domai 92.9 0.48 1E-05 50.4 9.4 24 214-237 29-52 (221)
483 cd03251 ABCC_MsbA MsbA is an e 92.9 0.45 9.7E-06 51.2 9.2 25 214-238 27-51 (234)
484 PRK13657 cyclic beta-1,2-gluca 92.9 0.3 6.4E-06 60.6 8.8 24 214-237 360-383 (588)
485 PRK13946 shikimate kinase; Pro 92.9 0.075 1.6E-06 54.8 3.0 24 216-239 11-34 (184)
486 PRK13543 cytochrome c biogenes 92.9 0.42 9.1E-06 50.6 8.8 24 214-237 36-59 (214)
487 PRK05439 pantothenate kinase; 92.9 0.13 2.9E-06 56.8 5.1 29 213-241 84-112 (311)
488 PRK13948 shikimate kinase; Pro 92.9 0.083 1.8E-06 54.0 3.2 27 214-240 9-35 (182)
489 cd02023 UMPK Uridine monophosp 92.8 0.072 1.6E-06 55.7 2.9 23 217-239 1-23 (198)
490 cd03369 ABCC_NFT1 Domain 2 of 92.8 0.76 1.6E-05 48.3 10.7 25 214-238 33-57 (207)
491 PRK13765 ATP-dependent proteas 92.8 0.12 2.6E-06 63.1 5.1 74 188-270 27-101 (637)
492 TIGR01650 PD_CobS cobaltochela 92.8 0.18 4E-06 55.9 6.0 53 188-244 41-93 (327)
493 cd03282 ABC_MSH4_euk MutS4 hom 92.8 0.13 2.8E-06 53.8 4.5 117 214-340 28-157 (204)
494 COG1936 Predicted nucleotide k 92.7 0.08 1.7E-06 52.1 2.7 20 217-236 2-21 (180)
495 TIGR02322 phosphon_PhnN phosph 92.7 0.087 1.9E-06 54.0 3.2 25 216-240 2-26 (179)
496 PRK11174 cysteine/glutathione 92.7 0.34 7.3E-06 60.2 8.9 26 214-239 375-400 (588)
497 COG2274 SunT ABC-type bacterio 92.7 0.39 8.5E-06 59.6 9.3 24 214-237 498-521 (709)
498 TIGR01313 therm_gnt_kin carboh 92.7 0.29 6.3E-06 49.3 6.9 22 218-239 1-22 (163)
499 TIGR00764 lon_rel lon-related 92.7 0.15 3.3E-06 62.5 5.6 57 191-251 17-74 (608)
500 PRK08840 replicative DNA helic 92.6 0.74 1.6E-05 54.5 11.1 73 194-273 197-270 (464)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.8e-139 Score=1357.74 Aligned_cols=956 Identities=33% Similarity=0.562 Sum_probs=826.7
Q ss_pred CCCCCccEEEcccccccccchHHHHHHHHhhCCCceEecCCCCCCCcchHHHHHHHHhcccEEEEecCCcccchhhHHHH
Q 001161 17 NPEVQYDVFLSFRGEDTRENFTSHLYSALSRESIETFIDDDLRRGDEISQSLLDAIEASSISIIVFSERYASSRWCLDEL 96 (1134)
Q Consensus 17 ~~~~~~dvFis~~~~D~r~~~~~~l~~~l~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~~El 96 (1134)
++.|+||||+||||+|||++|++||+++|.++||.+|+|+++++|+.|.+++.+||++|+++|||||++||+|+|||+||
T Consensus 8 ~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el 87 (1153)
T PLN03210 8 SRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNEL 87 (1153)
T ss_pred CCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCcEEEeEEeeecccccccccccchhhHHhhccc-ChhhHHHHHHHHHHhcccccccccCCchhHHHHHHH
Q 001161 97 LKILECKKEYAQIVIPACYRVDPSHVRKQTGNFGDSFLKLGER-FPDKMQSWRNALTEAADLSGFDSRVYRTESALIEEI 175 (1134)
Q Consensus 97 ~~~~~~~~~~~~~v~pvf~~v~p~~vr~q~g~~~~~~~~~~~~-~~~~~~~w~~al~~~~~~~g~~~~~~~~e~~~i~~i 175 (1134)
++|++|+++.+++|+||||+|||+|||+|+|.||++|++++++ ..+++++||+||++||+++||++..+++|+++|++|
T Consensus 88 ~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~I 167 (1153)
T PLN03210 88 LEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEI 167 (1153)
T ss_pred HHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999875 448999999999999999999999899999999999
Q ss_pred HHHHHhhccccCCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeec--h
Q 001161 176 VNAILKRVDDTFQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNV--R 253 (1134)
Q Consensus 176 ~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~--~ 253 (1134)
|++|++++..+++.+.+++|||+++++++.++|..+.+++++|+||||||+||||||+++|+++..+|++.+|+... +
T Consensus 168 v~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~ 247 (1153)
T PLN03210 168 ANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFIS 247 (1153)
T ss_pred HHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccc
Confidence 99999999988888999999999999999999988888899999999999999999999999999999999998542 1
Q ss_pred hHh---h------cCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChHHHHHHhcCcCCCCCC
Q 001161 254 EAE---E------TGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPRQIKILVGRLDLLASG 324 (1134)
Q Consensus 254 ~~~---~------~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~g 324 (1134)
... . ......++++++.++........ .....++++++++|+||||||||+.++|+.+.....|+++|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~---~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~G 324 (1153)
T PLN03210 248 KSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKI---YHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSG 324 (1153)
T ss_pred cchhhcccccccccchhHHHHHHHHHHHhCCCCccc---CCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCC
Confidence 111 0 01123566777777665443221 11356788999999999999999999999999988899999
Q ss_pred cEEEEEeCChhhhhhcCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHhcCCCH
Q 001161 325 SRIIITTRDRQVLANCGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLGRYLYGKRR 404 (1134)
Q Consensus 325 srIiiTTR~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~ 404 (1134)
|+||||||+++++..++++.+|+|+.|+.+||++||+++||++..+.+++.+++++|+++|+|+||||+++|++|++++.
T Consensus 325 srIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~ 404 (1153)
T PLN03210 325 SRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDK 404 (1153)
T ss_pred cEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCH
Confidence 99999999999998888889999999999999999999999988777889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCchhhhhhhhhcCCCH-HHHHHHHhhhcccCCCCHHHHHHHhhhCCCchhcchHHhhccCCeeEe
Q 001161 405 EVWENAISKWETAPPKGIQDALKISYDGLDD-KEQNVFLDIACFFIDDDRDTVTKFLDDCEFFATSGIEVLVDKHLITIS 483 (1134)
Q Consensus 405 ~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~-~~k~~fl~~a~f~~~~~~~~l~~~~~~~~~~~~~~i~~L~~~sLi~~~ 483 (1134)
.+|+.++++++..++..|.++|++||++|++ .+|.||+++||||.+.+++.+..++..+++.+..+++.|+++|||++.
T Consensus 405 ~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~ 484 (1153)
T PLN03210 405 EDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR 484 (1153)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc
Confidence 9999999999998888999999999999976 599999999999999999999999999999999999999999999987
Q ss_pred cCCeEEEChhHHHHHHHHhhccCCCCCCCcccccchhhHHHHhhcCCCcccccccccccCcccccccCccccccCCCccE
Q 001161 484 VRNKIKMHDLLRAMGREIVRQESTNDPGKRSRLWHHKEVYKILSENRGTEAIEGILLDMSKVKDINLHPNVFAKMPNLRI 563 (1134)
Q Consensus 484 ~~~~~~mHdlv~~~~~~i~~~e~~~~~~~~srl~~~~~i~~~l~~~~~~~~i~~i~ldls~~~~~~l~~~~f~~l~~Lr~ 563 (1134)
.++++|||++|+||++++++++ .+|++|+|+|+++++++++..++|++.+++|.+|++....+.+..++|.+|++|++
T Consensus 485 -~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~ 562 (1153)
T PLN03210 485 -EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLF 562 (1153)
T ss_pred -CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccE
Confidence 6889999999999999999997 78999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcc-cCcceeeccCCCCc--CeeEEEeecCCCCCCCCCCCCcccceEeeCCCCCccccchhhhccccchhhccc
Q 001161 564 LKFYNSMDE-ENKCKVSHFQGSEF--TEVRYLHWHGYPLKSLPSNIHPEKLVLLEMPYSNIEQLFDIVQNHGKLYQIITA 640 (1134)
Q Consensus 564 L~l~~~~~~-~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~ 640 (1134)
|+++++... .......++.++.. .+|++|+|.+|+++.+|..+.+.+|++|+|++|+++.+|.++..+++|+.|+++
T Consensus 563 L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls 642 (1153)
T PLN03210 563 LKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLR 642 (1153)
T ss_pred EEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECC
Confidence 999875321 12234566777666 789999999999999999999999999999999999999999999999999999
Q ss_pred cccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCcc-CcCcccEEEecCCCCCCCcccccC-CCcceeEecCcC-ccc
Q 001161 641 AFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRI-HLELLKELNLSGCSKLKRLPEISS-GNIETMHLDGTA-LEE 717 (1134)
Q Consensus 641 ~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~-~l~~L~~L~Ls~~~~l~~~~~~~~-~~L~~L~L~~n~-i~~ 717 (1134)
+++.+..+| .++.+++|+.|+|++|..+..+|..+ ++++|+.|++++|..++.+|.... .+|+.|+++++. +..
T Consensus 643 ~~~~l~~ip---~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~ 719 (1153)
T PLN03210 643 GSKNLKEIP---DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKS 719 (1153)
T ss_pred CCCCcCcCC---ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccc
Confidence 998888775 37889999999999999999999887 699999999999999999987654 899999999874 345
Q ss_pred cCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCC-------CCCccccCCCCCcEEEccCCc-Cccc
Q 001161 718 LPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQ-------RLPEELGYLEALDSLHAVGTA-IREL 789 (1134)
Q Consensus 718 lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~-------~~p~~~~~l~~L~~L~L~~n~-i~~l 789 (1134)
+|.. .++|+.|+|++|.+ ..+|..+ .+++|++|.+.++.... ..+......++|+.|++++|. +.++
T Consensus 720 ~p~~---~~nL~~L~L~~n~i-~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l 794 (1153)
T PLN03210 720 FPDI---STNISWLDLDETAI-EEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL 794 (1153)
T ss_pred cccc---cCCcCeeecCCCcc-ccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcccc
Confidence 5542 46899999999884 5677755 68899999988754221 112223345789999999985 4589
Q ss_pred CccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCC-CCCCccccccccCcceeecCCCCccccccchhCCC
Q 001161 790 PPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCG-ITELPESLGLLSLVTELHLEGNNFERIPESIIQLS 868 (1134)
Q Consensus 790 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~ 868 (1134)
|.+++++++|+.|++++|..+... +... ++++|+.|+|++|. +..+|.. .++|+.|+|++|.++.+|.++..++
T Consensus 795 P~si~~L~~L~~L~Ls~C~~L~~L-P~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~ 869 (1153)
T PLN03210 795 PSSIQNLHKLEHLEIENCINLETL-PTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFS 869 (1153)
T ss_pred ChhhhCCCCCCEEECCCCCCcCee-CCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCC
Confidence 999999999999999987644432 3222 68999999999985 4456543 4689999999999999999999999
Q ss_pred CCcEEEeccccCCCccCCc---CCCcCeEeccCCcccccccCCC-CC----------CCCccceeeeccCCCCCCccccc
Q 001161 869 NLEWLFIRYCERLQSLPKL---PCNLIWLDAHHCTALESLPGLF-PS----------SNESYLRTLYLSDNFKLDPNDLG 934 (1134)
Q Consensus 869 ~L~~L~Ls~n~~l~~lp~~---~~~L~~L~l~~c~~l~~~~~~~-~~----------~~l~~L~~L~Ls~n~~L~~~~l~ 934 (1134)
+|+.|+|++|+.+..+|.. +++|+.|++++|..+..++-.- |. ..++....+.+.+|++|++..+
T Consensus 870 ~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~- 948 (1153)
T PLN03210 870 NLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEAL- 948 (1153)
T ss_pred CCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhh-
Confidence 9999999999999988854 4578888999999887654210 00 0112223345566666554331
Q ss_pred cchHHHHHHhHHHHHHhHHhhhhcCCCCCCCceEEecCCCCCccccccCCCceEE-EEcCCCCCCCCcceeEEEEEEEec
Q 001161 935 GIVKGALQKIQLLATARLKEAREKISYPSREGRGFLPWNEIPKWFSFQSAGSCVT-LEMPPDFFNDKSVIGLAFSVIVNF 1013 (1134)
Q Consensus 935 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~pg~~iP~~~~~~~~g~~~~-~~lp~~~~~~~~~~g~~~c~v~~~ 1013 (1134)
+ .+ ......+++||.++|.||.|+..|++++ +++|+.|+..+ |.||++|+|+++
T Consensus 949 ------l------------~~------~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~-~~~f~~c~v~~~ 1003 (1153)
T PLN03210 949 ------L------------QQ------QSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQP-FFRFRACAVVDS 1003 (1153)
T ss_pred ------h------------cc------cccceEEECCCccCchhccCCcccceeeeeccCCcccCCC-ccceEEEEEEec
Confidence 0 00 0123357899999999999999999998 99999999877 999999999987
Q ss_pred CCC
Q 001161 1014 SRE 1016 (1134)
Q Consensus 1014 ~~~ 1016 (1134)
...
T Consensus 1004 ~~~ 1006 (1153)
T PLN03210 1004 ESF 1006 (1153)
T ss_pred Ccc
Confidence 764
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9e-56 Score=542.99 Aligned_cols=578 Identities=25% Similarity=0.346 Sum_probs=423.8
Q ss_pred cccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHH---HhccCCceeeeeechhHhhcCCHHHHHHHHHHH
Q 001161 195 VGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSK---ISRHFAGSFFARNVREAEETGRLGDLRQQLLST 271 (1134)
Q Consensus 195 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 271 (1134)
||.+..++++.+.|..++. ++|+|+||||+||||||+.++++ +..+|+.++|+ .+++.+....++++++..
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV----~VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWV----VVSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEE----EEcccccHHhHHHHHHHH
Confidence 9999999999999986544 89999999999999999999983 67899999999 456788999999999998
Q ss_pred HhcCCCCC--CCccccHHHHHHhhcCCcceEEEecCCChHHHHHHhcCcCCCCCCcEEEEEeCChhhhhh-cCCCeEEEe
Q 001161 272 LLNDGNVK--NFPNIDLNFQSKKLTRKKVLIVFDDVNHPRQIKILVGRLDLLASGSRIIITTRDRQVLAN-CGVDEVYQM 348 (1134)
Q Consensus 272 l~~~~~~~--~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~~-~~~~~~~~l 348 (1134)
+....... ...++....+.+.|++||+||||||||+..+|+.+..+++....||+|++|||++.|+.. +++...+++
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence 87644333 233577888999999999999999999999999999999988899999999999999988 788889999
Q ss_pred cCCCHHhHHHHHHHhhcCCC-CCCccHHHHHHHHHHHhcCChHHHHHHHHHhcCC-CHHHHHHHHHHHHcC-----C--C
Q 001161 349 KELVHDDALRLFSRHAFEGD-HPHESHTELACKIIKYARGVPLALEVLGRYLYGK-RREVWENAISKWETA-----P--P 419 (1134)
Q Consensus 349 ~~L~~~ea~~Lf~~~af~~~-~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~-~~~~w~~~l~~l~~~-----~--~ 419 (1134)
+.|+.+|||+||++.+|... ...+...++|++++++|+|+|||+.++|+.|+.+ +..+|+.+.+.+... + .
T Consensus 315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~ 394 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME 394 (889)
T ss_pred cccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh
Confidence 99999999999999998763 3334579999999999999999999999999987 677999999988665 1 3
Q ss_pred CchhhhhhhhhcCCCHHHHHHHHhhhcccCCCC--HHHHHHHhhhCCCc------------hhcchHHhhccCCeeEec-
Q 001161 420 KGIQDALKISYDGLDDKEQNVFLDIACFFIDDD--RDTVTKFLDDCEFF------------ATSGIEVLVDKHLITISV- 484 (1134)
Q Consensus 420 ~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~l~~~~~~~~~~------------~~~~i~~L~~~sLi~~~~- 484 (1134)
+.|..+++.|||.|+++.|.||+|||.||+++. ++.+..+|.++|+. ....+.+|++++|+...+
T Consensus 395 ~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 395 ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 578899999999999999999999999999985 57899999999965 234589999999999874
Q ss_pred ---CCeEEEChhHHHHHHHHhhccCCCCCCCcccccchhhHHHHhhcCCCcccccccccccCcccccccCccccccCCCc
Q 001161 485 ---RNKIKMHDLLRAMGREIVRQESTNDPGKRSRLWHHKEVYKILSENRGTEAIEGILLDMSKVKDINLHPNVFAKMPNL 561 (1134)
Q Consensus 485 ---~~~~~mHdlv~~~~~~i~~~e~~~~~~~~srl~~~~~i~~~l~~~~~~~~i~~i~ldls~~~~~~l~~~~f~~l~~L 561 (1134)
...+.|||++|+||.+++...+..... .+ .....
T Consensus 475 ~~~~~~~kmHDvvRe~al~ias~~~~~~e~---~i---------v~~~~------------------------------- 511 (889)
T KOG4658|consen 475 EGRKETVKMHDVVREMALWIASDFGKQEEN---QI---------VSDGV------------------------------- 511 (889)
T ss_pred ccceeEEEeeHHHHHHHHHHhccccccccc---eE---------EECCc-------------------------------
Confidence 267999999999999999754311110 00 00000
Q ss_pred cEEEEecCCcccCcceeeccCCCCcCeeEEEeecCCCCCCCCCCCCcccceEeeCCCCC--ccccchhhhccccchhhcc
Q 001161 562 RILKFYNSMDEENKCKVSHFQGSEFTEVRYLHWHGYPLKSLPSNIHPEKLVLLEMPYSN--IEQLFDIVQNHGKLYQIIT 639 (1134)
Q Consensus 562 r~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~--i~~l~~~~~~l~~L~~L~l 639 (1134)
.....+........|...+.+|.+..++.....++|++|-+..|. +..++
T Consensus 512 --------------~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is-------------- 563 (889)
T KOG4658|consen 512 --------------GLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEIS-------------- 563 (889)
T ss_pred --------------CccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcC--------------
Confidence 000112222224566667777777777766655566666555553 22221
Q ss_pred ccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCcc-CcCcccEEEecCCCCCCCcccccCCCcceeEecCcCcccc
Q 001161 640 AAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRI-HLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEEL 718 (1134)
Q Consensus 640 ~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~-~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~l 718 (1134)
...|..++.|+.|||++|..++.+|..+ .+-+|++|+|++ +.|..+
T Consensus 564 -----------~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~----------------------t~I~~L 610 (889)
T KOG4658|consen 564 -----------GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD----------------------TGISHL 610 (889)
T ss_pred -----------HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC----------------------CCcccc
Confidence 2235667777778887777777777777 377666666665 567789
Q ss_pred CccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCC--CCCCCCccccCCCCCcEEEccCCcCcccCccccCC
Q 001161 719 PSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCS--NLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRL 796 (1134)
Q Consensus 719 p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~--~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l 796 (1134)
|.++++|.+|.+|++..+.....+|..+..+++|++|.+..-. .....-..+.++++|+.|....... .+-..+..+
T Consensus 611 P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~ 689 (889)
T KOG4658|consen 611 PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGM 689 (889)
T ss_pred chHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhh
Confidence 9999999999999999988877787777779999999987643 1122223345555555555544333 111112222
Q ss_pred CCCC----EEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCcc-cc-----c-cccCcceeecCCCCccccccchh
Q 001161 797 KSVR----AIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPE-SL-----G-LLSLVTELHLEGNNFERIPESII 865 (1134)
Q Consensus 797 ~~L~----~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l-----~-~l~~L~~L~Ls~n~l~~lp~~l~ 865 (1134)
+.|. .+.+.++. .......+..+.+|+.|.+.+|.+.++.. +. . .+++|..+...++..-..+.+..
T Consensus 690 ~~L~~~~~~l~~~~~~--~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~ 767 (889)
T KOG4658|consen 690 TRLRSLLQSLSIEGCS--KRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLL 767 (889)
T ss_pred HHHHHHhHhhhhcccc--cceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhh
Confidence 2222 22222111 11223356678888888888888774321 11 1 13345555555554445555566
Q ss_pred CCCCCcEEEeccccCCCccC
Q 001161 866 QLSNLEWLFIRYCERLQSLP 885 (1134)
Q Consensus 866 ~l~~L~~L~Ls~n~~l~~lp 885 (1134)
-.++|+.|.+..|+....+.
T Consensus 768 f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 768 FAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred ccCcccEEEEecccccccCC
Confidence 67788888888887766554
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=7.4e-42 Score=331.25 Aligned_cols=157 Identities=30% Similarity=0.501 Sum_probs=143.9
Q ss_pred CCCCCCCccEEEcccccccccchHHHHHHHHhhCCCceEecC-CCCCCCcchHHHHHHHHhcccEEEEecCCcccchhhH
Q 001161 15 LTNPEVQYDVFLSFRGEDTRENFTSHLYSALSRESIETFIDD-DLRRGDEISQSLLDAIEASSISIIVFSERYASSRWCL 93 (1134)
Q Consensus 15 ~~~~~~~~dvFis~~~~D~r~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~ 93 (1134)
|++...+|||||||||+|+|++|++||+++|+++||+||+|+ ++++|+.|.++|.+||++|+++|||||++|++|+||+
T Consensus 20 ~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCL 99 (187)
T PLN03194 20 SSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCL 99 (187)
T ss_pred CCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHH
Confidence 455678899999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCcEEEeEEeeecccccccc-cccchhhHHhhcccChhhHHHHHHHHHHhcccccccccC-CchhHHH
Q 001161 94 DELLKILECKKEYAQIVIPACYRVDPSHVRKQ-TGNFGDSFLKLGERFPDKMQSWRNALTEAADLSGFDSRV-YRTESAL 171 (1134)
Q Consensus 94 ~El~~~~~~~~~~~~~v~pvf~~v~p~~vr~q-~g~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~-~~~e~~~ 171 (1134)
+||++|++|. .+|+||||+|||++||+| .|. ...+++++||+||++||+++|+++.. .++|+++
T Consensus 100 dEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~----------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~ 165 (187)
T PLN03194 100 HELALIMESK----KRVIPIFCDVKPSQLRVVDNGT----------CPDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEV 165 (187)
T ss_pred HHHHHHHHcC----CEEEEEEecCCHHHhhccccCC----------CCHHHHHHHHHHHHHHhccccccCCCCCCCHHHH
Confidence 9999999874 369999999999999997 443 13489999999999999999998764 5789999
Q ss_pred HHHHHHHHHhhccc
Q 001161 172 IEEIVNAILKRVDD 185 (1134)
Q Consensus 172 i~~i~~~v~~~l~~ 185 (1134)
|++|++.|.++|..
T Consensus 166 i~~iv~~v~k~l~~ 179 (187)
T PLN03194 166 VTMASDAVIKNLIE 179 (187)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988753
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.4e-37 Score=402.68 Aligned_cols=407 Identities=19% Similarity=0.238 Sum_probs=224.5
Q ss_pred CCCCCcccccchhhHHHHhhcCCCcccccccccccCcccccccCccccccCCCccEEEEecCCcccCcceeeccCCC--C
Q 001161 508 NDPGKRSRLWHHKEVYKILSENRGTEAIEGILLDMSKVKDINLHPNVFAKMPNLRILKFYNSMDEENKCKVSHFQGS--E 585 (1134)
Q Consensus 508 ~~~~~~srl~~~~~i~~~l~~~~~~~~i~~i~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~--~ 585 (1134)
.++.++.+.|...+.+............+...+|++.+......+.+|..+++|+.|++++|.. ....|... .
T Consensus 42 ~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~-----~~~ip~~~~~~ 116 (968)
T PLN00113 42 NDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL-----SGPIPDDIFTT 116 (968)
T ss_pred CCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc-----CCcCChHHhcc
Confidence 3455556667544333222222222222445567776655545567788888888888877642 11233322 2
Q ss_pred cCeeEEEeecCCCCCCCCCCCCcccceEeeCCCCCcc-ccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEE
Q 001161 586 FTEVRYLHWHGYPLKSLPSNIHPEKLVLLEMPYSNIE-QLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILN 664 (1134)
Q Consensus 586 ~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~-~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 664 (1134)
+++|++|++++|.+....+...+++|++|+|++|.+. .+|..+.++.+|+.|++++|...... |..+.++++|++|+
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~ 194 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI--PNSLTNLTSLEFLT 194 (968)
T ss_pred CCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccC--ChhhhhCcCCCeee
Confidence 3777777777777763322334667777777777775 35666677777777777766544333 34566666677777
Q ss_pred ccCCCCCcccCCcc-CcCcccEEEecCCCCCCCcccccC--CCcceeEecCcCcc-ccCccccCCCCCCeeeccCCcCCc
Q 001161 665 LSGCGNLQSLPDRI-HLELLKELNLSGCSKLKRLPEISS--GNIETMHLDGTALE-ELPSSIECLSKLSRLDLADCKSLK 740 (1134)
Q Consensus 665 L~~~~~~~~lp~~~-~l~~L~~L~Ls~~~~l~~~~~~~~--~~L~~L~L~~n~i~-~lp~~~~~l~~L~~L~L~~n~~~~ 740 (1134)
|++|.+.+.+|..+ ++++|++|+|++|.....+|.... .+|+.|++++|.+. .+|..++++++|+.|+|++|.+.+
T Consensus 195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence 76666666666555 466666666666665555554332 56666666666555 455556666666666666665555
Q ss_pred ccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCc-ccCccccCCCCCCEEEecCCCCCCCCcccccC
Q 001161 741 SLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIR-ELPPSIVRLKSVRAIYFGRNRGLSLPITFSVD 819 (1134)
Q Consensus 741 ~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 819 (1134)
.+|..+.++++|++|++++|.+.+.+|..+.++++|+.|++++|.+. .+|..+..+++|+.|++++|. +.+..+..+.
T Consensus 275 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~ 353 (968)
T PLN00113 275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK-FSGEIPKNLG 353 (968)
T ss_pred cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC-CcCcCChHHh
Confidence 55555555555666665555555555555555555555555555554 344444555555555555554 3333333333
Q ss_pred CCCCCCEEecc------------------------CCCCC-CCccccccccCcceeecCCCCcc-ccccchhCCCCCcEE
Q 001161 820 GLQNLRDLNLN------------------------DCGIT-ELPESLGLLSLVTELHLEGNNFE-RIPESIIQLSNLEWL 873 (1134)
Q Consensus 820 ~l~~L~~L~Ls------------------------~n~l~-~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 873 (1134)
.+++|+.|+|+ +|++. .+|..++.+++|+.|+|++|+++ .+|..+.++++|+.|
T Consensus 354 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 433 (968)
T PLN00113 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL 433 (968)
T ss_pred CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEE
Confidence 44444444444 44433 23444555555666666666555 455555555566666
Q ss_pred EeccccCCCccCC---cCCCcCeEeccCCcccccccCCCCCCCCccceeeeccCC
Q 001161 874 FIRYCERLQSLPK---LPCNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDN 925 (1134)
Q Consensus 874 ~Ls~n~~l~~lp~---~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n 925 (1134)
++++|++.+.+|. .+++|+.|++++|.....+|..+ ..++|+.|++++|
T Consensus 434 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~---~~~~L~~L~ls~n 485 (968)
T PLN00113 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF---GSKRLENLDLSRN 485 (968)
T ss_pred ECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc---ccccceEEECcCC
Confidence 6665555554442 23455555555555444333221 2234444444444
No 5
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.5e-36 Score=335.75 Aligned_cols=267 Identities=29% Similarity=0.440 Sum_probs=213.2
Q ss_pred cchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHH--HhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhc
Q 001161 197 VRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSK--ISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLN 274 (1134)
Q Consensus 197 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~ 274 (1134)
||+++++|.+.|....++.++|+|+||||+||||||++++++ ++.+|+.++|+... ......+++++++.++..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~----~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLS----KNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEE----S-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccc----cccccccccccccccccc
Confidence 788999999999886688999999999999999999999987 88999999998543 344557888888888876
Q ss_pred CCC---CCCCccccHHHHHHhhcCCcceEEEecCCChHHHHHHhcCcCCCCCCcEEEEEeCChhhhhhcCC-CeEEEecC
Q 001161 275 DGN---VKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPRQIKILVGRLDLLASGSRIIITTRDRQVLANCGV-DEVYQMKE 350 (1134)
Q Consensus 275 ~~~---~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~~~-~~~~~l~~ 350 (1134)
... ...+.+.....+++.|+++++||||||||+..+|+.+...++....|++||||||+..++...+. ...|++++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 633 23556667889999999999999999999999999888877777789999999999998876654 67899999
Q ss_pred CCHHhHHHHHHHhhcCCC-CCCccHHHHHHHHHHHhcCChHHHHHHHHHhcCC-CHHHHHHHHHHHHcCC------CCch
Q 001161 351 LVHDDALRLFSRHAFEGD-HPHESHTELACKIIKYARGVPLALEVLGRYLYGK-RREVWENAISKWETAP------PKGI 422 (1134)
Q Consensus 351 L~~~ea~~Lf~~~af~~~-~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~-~~~~w~~~l~~l~~~~------~~~i 422 (1134)
|+.+||++||.+.++... .......+.+++|+++|+|+||||+++|++|+.+ +..+|+..++++.... ...+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999997655 3334556789999999999999999999999543 6788999998876543 3568
Q ss_pred hhhhhhhhcCCCHHHHHHHHhhhcccCCCC--HHHHHHHhhhCCCch
Q 001161 423 QDALKISYDGLDDKEQNVFLDIACFFIDDD--RDTVTKFLDDCEFFA 467 (1134)
Q Consensus 423 ~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~l~~~~~~~~~~~ 467 (1134)
..++..||+.|+++.|+||+++|+||.+.. .+.+..+|.++|+..
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 999999999999999999999999999875 788999999987654
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-35 Score=385.74 Aligned_cols=366 Identities=23% Similarity=0.288 Sum_probs=237.1
Q ss_pred CeeEEEeecCCCCC-CCCCCC-CcccceEeeCCCCCcc-ccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEE
Q 001161 587 TEVRYLHWHGYPLK-SLPSNI-HPEKLVLLEMPYSNIE-QLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAIL 663 (1134)
Q Consensus 587 ~~L~~L~l~~~~l~-~lp~~~-~l~~L~~L~L~~n~i~-~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 663 (1134)
++|++|++++|.+. .+|..+ .+++|++|++++|.+. .+|..+.++++|+.|++++|...... |..+.++++|++|
T Consensus 212 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L 289 (968)
T PLN00113 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI--PPSIFSLQKLISL 289 (968)
T ss_pred CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC--chhHhhccCcCEE
Confidence 55555555555554 344433 2555555555555554 24445555555555555554433222 3345555566666
Q ss_pred EccCCCCCcccCCcc-CcCcccEEEecCCCCCCCcccccC--CCcceeEecCcCcc-ccCccccCCCCCCeeeccCCcCC
Q 001161 664 NLSGCGNLQSLPDRI-HLELLKELNLSGCSKLKRLPEISS--GNIETMHLDGTALE-ELPSSIECLSKLSRLDLADCKSL 739 (1134)
Q Consensus 664 ~L~~~~~~~~lp~~~-~l~~L~~L~Ls~~~~l~~~~~~~~--~~L~~L~L~~n~i~-~lp~~~~~l~~L~~L~L~~n~~~ 739 (1134)
+|++|.+.+.+|..+ ++++|+.|++++|.....+|.... ++|+.|++++|.+. .+|..++.+++|+.|++++|.+.
T Consensus 290 ~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 290 DLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred ECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence 666655555555544 455666666666555544444322 55666666666665 45555666666666666666666
Q ss_pred cccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCc-ccCccccCCCCCCEEEecCCCCCCCCccccc
Q 001161 740 KSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIR-ELPPSIVRLKSVRAIYFGRNRGLSLPITFSV 818 (1134)
Q Consensus 740 ~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 818 (1134)
+.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|. +.+..+..+
T Consensus 370 ~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 448 (968)
T PLN00113 370 GEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN-LQGRINSRK 448 (968)
T ss_pred eeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc-ccCccChhh
Confidence 666666666666666666666666666666667777777777777766 556666677777777777776 555555556
Q ss_pred CCCCCCCEEeccCCCCCC-CccccccccCcceeecCCCCcc-ccccchhCCCCCcEEEeccccCCCccCCc---CCCcCe
Q 001161 819 DGLQNLRDLNLNDCGITE-LPESLGLLSLVTELHLEGNNFE-RIPESIIQLSNLEWLFIRYCERLQSLPKL---PCNLIW 893 (1134)
Q Consensus 819 ~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~~l~~lp~~---~~~L~~ 893 (1134)
..+++|+.|+|++|++.. +|..+ ..++|+.|+|++|+++ .+|..+.++++|+.|+|++|++.+.+|.. +++|+.
T Consensus 449 ~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 527 (968)
T PLN00113 449 WDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVS 527 (968)
T ss_pred ccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCE
Confidence 667777777777777763 44433 4567888888888777 66777778888888888888887777743 467888
Q ss_pred EeccCCcccccccCCCCCCCCccceeeeccCCCCCCccccccchHHHHHHhHHHHHHhHHhhhhcCCCCCC
Q 001161 894 LDAHHCTALESLPGLFPSSNESYLRTLYLSDNFKLDPNDLGGIVKGALQKIQLLATARLKEAREKISYPSR 964 (1134)
Q Consensus 894 L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 964 (1134)
|++++|.....+|..+ ..+++|+.|+|++| .+++.+|..+.+++.|+.|++++|+++|.+|..
T Consensus 528 L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N------~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 528 LDLSHNQLSGQIPASF--SEMPVLSQLDLSQN------QLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred EECCCCcccccCChhH--hCcccCCEEECCCC------cccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 8888877666665443 46777888888877 777778888888888888888888888888754
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=1.3e-30 Score=285.95 Aligned_cols=336 Identities=21% Similarity=0.180 Sum_probs=246.8
Q ss_pred CeeEEEeecCCCCCCCCCCCC-cccceEeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEc
Q 001161 587 TEVRYLHWHGYPLKSLPSNIH-PEKLVLLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNL 665 (1134)
Q Consensus 587 ~~L~~L~l~~~~l~~lp~~~~-l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L 665 (1134)
++|+.+++..|.++.+|...+ ..+|+.|+|.+|.|..+- ...++.++.|+.|||
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~-------------------------se~L~~l~alrslDL 156 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVT-------------------------SEELSALPALRSLDL 156 (873)
T ss_pred CcceeeeeccchhhhcccccccccceeEEeeecccccccc-------------------------HHHHHhHhhhhhhhh
Confidence 455555555555555555444 233555555555555441 223344444445555
Q ss_pred cCCCCCcccCCcc-CcCcccEEEecCCCCCCCcccccC--CCcceeEecCcCccccCcc-ccCCCCCCeeeccCCcCCcc
Q 001161 666 SGCGNLQSLPDRI-HLELLKELNLSGCSKLKRLPEISS--GNIETMHLDGTALEELPSS-IECLSKLSRLDLADCKSLKS 741 (1134)
Q Consensus 666 ~~~~~~~~lp~~~-~l~~L~~L~Ls~~~~l~~~~~~~~--~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~ 741 (1134)
+.|.+...--..+ .-.++++|+|++|.+...-...+. .+|..|.|+.|.|+.+|.- |.+|++|+.|+|..|++.-.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 4443332211112 234555555555543221111111 4677777888889999975 88899999999999986544
Q ss_pred cCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCc-cccCCCCCCEEEecCCCCCCCCcccccCC
Q 001161 742 LPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPP-SIVRLKSVRAIYFGRNRGLSLPITFSVDG 820 (1134)
Q Consensus 742 lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 820 (1134)
--..|.+|++|+.|.|..|.+...-...|-.|.++++|+|..|++..+.. ++.+++.|+.|++++|. +......++.-
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~Wsf 315 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDSWSF 315 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh-hheeecchhhh
Confidence 34568999999999999999888778889999999999999999998765 67899999999999998 77777778888
Q ss_pred CCCCCEEeccCCCCCCCcc-ccccccCcceeecCCCCcccccc-chhCCCCCcEEEeccccCCCccCC------cCCCcC
Q 001161 821 LQNLRDLNLNDCGITELPE-SLGLLSLVTELHLEGNNFERIPE-SIIQLSNLEWLFIRYCERLQSLPK------LPCNLI 892 (1134)
Q Consensus 821 l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~~l~~lp~------~~~~L~ 892 (1134)
+++|++|+|++|+|+++++ .|..++.|++|+|++|.+..+.+ .|..+++|+.|||++|.+...+.+ .+++|+
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr 395 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR 395 (873)
T ss_pred cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence 9999999999999999865 68889999999999999998874 578899999999999998765542 467999
Q ss_pred eEeccCCcccccccCCCCCCCCccceeeeccCCCCCCccccccchHHHHHHhHHHHHHhHHhhhh
Q 001161 893 WLDAHHCTALESLPGLFPSSNESYLRTLYLSDNFKLDPNDLGGIVKGALQKIQLLATARLKEARE 957 (1134)
Q Consensus 893 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~~ 957 (1134)
.|++.+|+ ++.++.- ....+++|+.|||.+| ++..|-+.+|..+ +|+.|-++.-.+
T Consensus 396 kL~l~gNq-lk~I~kr-Afsgl~~LE~LdL~~N------aiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 396 KLRLTGNQ-LKSIPKR-AFSGLEALEHLDLGDN------AIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred heeecCce-eeecchh-hhccCcccceecCCCC------cceeecccccccc-hhhhhhhcccce
Confidence 99999964 4666532 2247899999999888 9999999999999 899988755433
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=4.1e-29 Score=274.12 Aligned_cols=350 Identities=18% Similarity=0.148 Sum_probs=291.7
Q ss_pred ccccCcccccccCccccccCCCccEEEEecCCcccCcceeeccCCCCc-CeeEEEeecCCCCCCCCCCC--CcccceEee
Q 001161 539 LLDMSKVKDINLHPNVFAKMPNLRILKFYNSMDEENKCKVSHFQGSEF-TEVRYLHWHGYPLKSLPSNI--HPEKLVLLE 615 (1134)
Q Consensus 539 ~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~ 615 (1134)
.+|++++...++....|.++++|+.+++.+|. -...|.+... .+|+.|+|.+|-|.++.+.- .++.|+.||
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~------Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE------LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccch------hhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 48999999999999999999999999998763 2344544444 77999999999998887653 378999999
Q ss_pred CCCCCccccchhhhc-cccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCccC-cCcccEEEecCCCC
Q 001161 616 MPYSNIEQLFDIVQN-HGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRIH-LELLKELNLSGCSK 693 (1134)
Q Consensus 616 L~~n~i~~l~~~~~~-l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~-l~~L~~L~Ls~~~~ 693 (1134)
|+.|.|+.++...+. -.++++|+|++|...+-- ...|..+.+|..|.|+.|.+...-+..++ +++|+.|+|..|..
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~--~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLE--TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccc--cccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence 999999999766544 489999999998743322 45788899999999999888776666664 99999999999754
Q ss_pred CCC-cccccC-CCcceeEecCcCccccCcc-ccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccc
Q 001161 694 LKR-LPEISS-GNIETMHLDGTALEELPSS-IECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEEL 770 (1134)
Q Consensus 694 l~~-~~~~~~-~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~ 770 (1134)
-.. .-.+.+ ++|+.|.|..|.|..+.+. |..|.++++|+|+.|++...-..++.+|++|+.|+++.|.+...-++.+
T Consensus 234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh
Confidence 222 222222 7899999999999999886 8889999999999999887777788999999999999999998889999
Q ss_pred cCCCCCcEEEccCCcCcccCc-cccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCC----Ccccccccc
Q 001161 771 GYLEALDSLHAVGTAIRELPP-SIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITE----LPESLGLLS 845 (1134)
Q Consensus 771 ~~l~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~----lp~~l~~l~ 845 (1134)
...++|++|+|++|+|+.+++ ++..+..|+.|.|++|+ +.......|.++.+|++|||++|.++- -...+..++
T Consensus 314 sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~ 392 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP 392 (873)
T ss_pred hhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccch
Confidence 999999999999999998876 56779999999999998 777777889999999999999999883 234577899
Q ss_pred CcceeecCCCCccccc-cchhCCCCCcEEEeccccCCCccCCcCC--CcCeEecc
Q 001161 846 LVTELHLEGNNFERIP-ESIIQLSNLEWLFIRYCERLQSLPKLPC--NLIWLDAH 897 (1134)
Q Consensus 846 ~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~~l~~lp~~~~--~L~~L~l~ 897 (1134)
+|+.|.|.||++..+| ..|.++++|+.|||.+|.+-..-|..+. .|++|.+.
T Consensus 393 ~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 393 SLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred hhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhc
Confidence 9999999999999999 5799999999999999998776665432 56666554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=1.7e-29 Score=277.81 Aligned_cols=358 Identities=23% Similarity=0.307 Sum_probs=277.3
Q ss_pred CCCccEEEEecCCcccCcceeeccCCCCc-CeeEEEeecCCCCCCCCCCCC-cccceEeeCCCCCccccchhhhccccch
Q 001161 558 MPNLRILKFYNSMDEENKCKVSHFQGSEF-TEVRYLHWHGYPLKSLPSNIH-PEKLVLLEMPYSNIEQLFDIVQNHGKLY 635 (1134)
Q Consensus 558 l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~lp~~~~-l~~L~~L~L~~n~i~~l~~~~~~l~~L~ 635 (1134)
++-.|-.++++|.+ ....+|....- +.+++|.+....+..+|.... +.+|++|.+++|++..+...+..++.|+
T Consensus 6 LpFVrGvDfsgNDF----sg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDF----SGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLR 81 (1255)
T ss_pred cceeecccccCCcC----CCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhH
Confidence 34455566766643 33456666555 889999999999999998874 8899999999999999988889999999
Q ss_pred hhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCcc-CcCcccEEEecCCCCCCCcccccC---CCcceeEec
Q 001161 636 QIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRI-HLELLKELNLSGCSKLKRLPEISS---GNIETMHLD 711 (1134)
Q Consensus 636 ~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~-~l~~L~~L~Ls~~~~l~~~~~~~~---~~L~~L~L~ 711 (1134)
.+++..|+. .....|..+.++..|..|||++|.+ ...|..+ ..+++-.|+||+|+ +..+|.-.. ..|-.|+|+
T Consensus 82 sv~~R~N~L-KnsGiP~diF~l~dLt~lDLShNqL-~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS 158 (1255)
T KOG0444|consen 82 SVIVRDNNL-KNSGIPTDIFRLKDLTILDLSHNQL-REVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLS 158 (1255)
T ss_pred HHhhhcccc-ccCCCCchhcccccceeeecchhhh-hhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccc
Confidence 999888764 4444577888999999999999654 5566666 57888899999865 555665443 667788899
Q ss_pred CcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCC-CCCCCccccCCCCCcEEEccCCcCcccC
Q 001161 712 GTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSN-LQRLPEELGYLEALDSLHAVGTAIRELP 790 (1134)
Q Consensus 712 ~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~-~~~~p~~~~~l~~L~~L~L~~n~i~~lp 790 (1134)
+|.+..+|+.+..|..|++|.|++|++...--..+-.+++|++|.+++.+. +..+|..+..+.+|..++++.|.+..+|
T Consensus 159 ~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP 238 (1255)
T KOG0444|consen 159 NNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP 238 (1255)
T ss_pred cchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch
Confidence 999999999999999999999999886543222334677888888888654 3568888889999999999999999999
Q ss_pred ccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccccccccCcceeecCCCCcc--ccccchhCCC
Q 001161 791 PSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFE--RIPESIIQLS 868 (1134)
Q Consensus 791 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~ 868 (1134)
..+.++.+|+.|+|++|. ++.. ....+...+|++|+||.|+++.+|+++..++.|+.|.+.+|+++ .||.+|+.|.
T Consensus 239 ecly~l~~LrrLNLS~N~-iteL-~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNK-ITEL-NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred HHHhhhhhhheeccCcCc-eeee-eccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence 999999999999999988 3322 22344567889999999999999999999999999999999776 8999999999
Q ss_pred CCcEEEeccccCCCccCCcC---CCcCeEeccCCcccccccCCCCCCCCccceeeeccCCCCC
Q 001161 869 NLEWLFIRYCERLQSLPKLP---CNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDNFKL 928 (1134)
Q Consensus 869 ~L~~L~Ls~n~~l~~lp~~~---~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L 928 (1134)
+|+.+..++|+ +..+|+.+ +.|+.|.++.|. +-++|..+ .-++.|+.||+.+|.+|
T Consensus 317 ~Levf~aanN~-LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaI--HlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 317 QLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNR-LITLPEAI--HLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhHHHHhhccc-cccCchhhhhhHHHHHhcccccc-eeechhhh--hhcCCcceeeccCCcCc
Confidence 99999888765 55667543 468888887654 44555544 35778888888888655
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=3.9e-29 Score=275.03 Aligned_cols=338 Identities=20% Similarity=0.264 Sum_probs=231.4
Q ss_pred cccccCCCccEEEEecCCcccCcceeeccCCCCc-CeeEEEeecCCCCCCCCCCC-CcccceEeeCCCCCccc--cchhh
Q 001161 553 NVFAKMPNLRILKFYNSMDEENKCKVSHFQGSEF-TEVRYLHWHGYPLKSLPSNI-HPEKLVLLEMPYSNIEQ--LFDIV 628 (1134)
Q Consensus 553 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~--l~~~~ 628 (1134)
.....|++++.|.+.... -...|+.+.. .+|+.|.+.+|.+.++-... .++.|+.+.+..|+++. +|..+
T Consensus 26 ~~v~qMt~~~WLkLnrt~------L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~di 99 (1255)
T KOG0444|consen 26 HDVEQMTQMTWLKLNRTK------LEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDI 99 (1255)
T ss_pred hhHHHhhheeEEEechhh------hhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchh
Confidence 334567778888775532 1233433333 67777888888777666555 37778888888887763 67777
Q ss_pred hccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCcc--CcCcccEEEecCCCCCCCcccccC-CCc
Q 001161 629 QNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRI--HLELLKELNLSGCSKLKRLPEISS-GNI 705 (1134)
Q Consensus 629 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~--~l~~L~~L~Ls~~~~l~~~~~~~~-~~L 705 (1134)
+.+..|..|+|++|.. .+. |..+...+++-.|+|++|++ ..+|... +++.|-.|+||+|..-.-.|.+.. .+|
T Consensus 100 F~l~dLt~lDLShNqL-~Ev--P~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~L 175 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHNQL-REV--PTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSML 175 (1255)
T ss_pred cccccceeeecchhhh-hhc--chhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhh
Confidence 7888888888887753 333 55677777888888887654 3455544 677778888887643333333332 677
Q ss_pred ceeEecCcCccccC-ccccCCCCCCeeeccCCcCC-cccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccC
Q 001161 706 ETMHLDGTALEELP-SSIECLSKLSRLDLADCKSL-KSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVG 783 (1134)
Q Consensus 706 ~~L~L~~n~i~~lp-~~~~~l~~L~~L~L~~n~~~-~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~ 783 (1134)
++|.|++|.+...- ..+..+++|+.|.+++.+.+ ..+|.++..+.+|..++++.|+ +..+|+.+-++++|+.|+|++
T Consensus 176 qtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 176 QTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSG 254 (1255)
T ss_pred hhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCc
Confidence 78888887665221 11334666777777765432 3577777778888888887765 456777777788888888888
Q ss_pred CcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCC--CCccccccccCcceeecCCCCccccc
Q 001161 784 TAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGIT--ELPESLGLLSLVTELHLEGNNFERIP 861 (1134)
Q Consensus 784 n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~l~~lp 861 (1134)
|.|+++........+|+.|++++|+ ++. .|..+..++.|+.|.+.+|+++ .||+.++.+.+|+.+..++|++.-+|
T Consensus 255 N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVP 332 (1255)
T KOG0444|consen 255 NKITELNMTEGEWENLETLNLSRNQ-LTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVP 332 (1255)
T ss_pred CceeeeeccHHHHhhhhhhccccch-hcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCc
Confidence 8888777777777778888888877 332 3445677778888888888766 57888888888888888888888888
Q ss_pred cchhCCCCCcEEEeccccCCCccCC---cCCCcCeEeccCCccccc
Q 001161 862 ESIIQLSNLEWLFIRYCERLQSLPK---LPCNLIWLDAHHCTALES 904 (1134)
Q Consensus 862 ~~l~~l~~L~~L~Ls~n~~l~~lp~---~~~~L~~L~l~~c~~l~~ 904 (1134)
++++.|..|+.|.|+.|++. .+|+ +++.|+.||+.+|+.+--
T Consensus 333 EglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 333 EGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred hhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccC
Confidence 88888888888888776644 4553 567778888887777643
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=7.9e-29 Score=261.06 Aligned_cols=406 Identities=21% Similarity=0.254 Sum_probs=273.3
Q ss_pred ccccccccCcccccccCccccccCCCccEEEEecCCcccCcceeeccCCCCc-CeeEEEeecCCCCCCCCCCCC-cccce
Q 001161 535 IEGILLDMSKVKDINLHPNVFAKMPNLRILKFYNSMDEENKCKVSHFQGSEF-TEVRYLHWHGYPLKSLPSNIH-PEKLV 612 (1134)
Q Consensus 535 i~~i~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~lp~~~~-l~~L~ 612 (1134)
+..-.++++.+....+. +...++..|.+|.+++|. ....|..+.- ..+..|+.+.|.+..+|..+. +.+|+
T Consensus 45 v~l~~lils~N~l~~l~-~dl~nL~~l~vl~~~~n~------l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLR-EDLKNLACLTVLNVHDNK------LSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLV 117 (565)
T ss_pred cchhhhhhccCchhhcc-HhhhcccceeEEEeccch------hhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhh
Confidence 33344566666544443 346677778888887753 2344444333 777888888888888888764 78888
Q ss_pred EeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCccCcCcccEEEecCCC
Q 001161 613 LLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRIHLELLKELNLSGCS 692 (1134)
Q Consensus 613 ~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~Ls~~~ 692 (1134)
.|+.++|.+..++++++.+..|..++..+|+..+. |..+.++.+|..|++.+|......|..+.++.|++||...|-
T Consensus 118 ~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~sl---p~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~ 194 (565)
T KOG0472|consen 118 KLDCSSNELKELPDSIGRLLDLEDLDATNNQISSL---PEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL 194 (565)
T ss_pred hhhccccceeecCchHHHHhhhhhhhccccccccC---chHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh
Confidence 88888888888888888888888888877765443 567888888888899888877777777788899999888754
Q ss_pred CCCCccccc-C-CCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccC-CCCCCcEEeecCCCCCCCCCcc
Q 001161 693 KLKRLPEIS-S-GNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLC-KLKSLDVLNIDGCSNLQRLPEE 769 (1134)
Q Consensus 693 ~l~~~~~~~-~-~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~-~l~~L~~L~L~~~~~~~~~p~~ 769 (1134)
++.+|.-. . .+|+-|+|..|+|..+| +|..+..|++|.++.|. +..+|...+ ++++|.+|++.+|+ +...|+.
T Consensus 195 -L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde 270 (565)
T KOG0472|consen 195 -LETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDE 270 (565)
T ss_pred -hhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccc-cccCchH
Confidence 55555443 3 78889999999999998 68999999999998887 556676655 89999999999976 5678999
Q ss_pred ccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCC------------------------CCcc----------
Q 001161 770 LGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLS------------------------LPIT---------- 815 (1134)
Q Consensus 770 ~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~------------------------~~~~---------- 815 (1134)
+..+.+|+.||+++|.|+.+|.+++++ .|+.|-+.+|..-+ +...
T Consensus 271 ~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t 349 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT 349 (565)
T ss_pred HHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence 999999999999999999999999999 99999999886210 0000
Q ss_pred ---c---ccCCCCCCCEEeccCCCCCCCcccccccc---CcceeecCCCCccccccchhCCCCCcEEEeccccCCCccCC
Q 001161 816 ---F---SVDGLQNLRDLNLNDCGITELPESLGLLS---LVTELHLEGNNFERIPESIIQLSNLEWLFIRYCERLQSLPK 886 (1134)
Q Consensus 816 ---~---~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~---~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp~ 886 (1134)
. ....+.+.+.|++++-+++.+|+....-. -....++++|++.++|..+..+..+.+.-+..|+..+-+|.
T Consensus 350 ~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~ 429 (565)
T KOG0472|consen 350 LPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPL 429 (565)
T ss_pred CCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchH
Confidence 0 11123456777777777777776443222 25556666666666554444333333332222333333331
Q ss_pred ---cCCCcCeEeccCCcccccccCCCCCCCCccceeeeccCC-----------------CCCCccccccchHHHHHHhHH
Q 001161 887 ---LPCNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDN-----------------FKLDPNDLGGIVKGALQKIQL 946 (1134)
Q Consensus 887 ---~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n-----------------~~L~~~~l~~~~~~~~~~l~~ 946 (1134)
.+++|..|++++| .+..+|..+ +.+..|+.|++|+| +-.++|++..+.++.+.+|.+
T Consensus 430 ~l~~l~kLt~L~L~NN-~Ln~LP~e~--~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n 506 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNN-LLNDLPEEM--GSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN 506 (565)
T ss_pred HHHhhhcceeeecccc-hhhhcchhh--hhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence 2233444444432 223333221 12333444444444 112335777777777888888
Q ss_pred HHHHhHHhhhhc
Q 001161 947 LATARLKEAREK 958 (1134)
Q Consensus 947 L~~L~L~~n~~~ 958 (1134)
|.+|||.+|.+.
T Consensus 507 L~tLDL~nNdlq 518 (565)
T KOG0472|consen 507 LTTLDLQNNDLQ 518 (565)
T ss_pred cceeccCCCchh
Confidence 888888888775
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=4.7e-27 Score=247.74 Aligned_cols=394 Identities=25% Similarity=0.305 Sum_probs=293.3
Q ss_pred ccccCcccccccCccccccCCCccEEEEecCCcccCcceeeccCCCCc-CeeEEEeecCCCCCCCCCCCC-cccceEeeC
Q 001161 539 LLDMSKVKDINLHPNVFAKMPNLRILKFYNSMDEENKCKVSHFQGSEF-TEVRYLHWHGYPLKSLPSNIH-PEKLVLLEM 616 (1134)
Q Consensus 539 ~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~lp~~~~-l~~L~~L~L 616 (1134)
.+++..+....+ +.+.+++..++.|+.+.|. ....|..... .+|+.|+++.|.++.+|+.+. +..|..|+.
T Consensus 72 vl~~~~n~l~~l-p~aig~l~~l~~l~vs~n~------ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 72 VLNVHDNKLSQL-PAAIGELEALKSLNVSHNK------LSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDA 144 (565)
T ss_pred EEEeccchhhhC-CHHHHHHHHHHHhhcccch------HhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhc
Confidence 455565555544 4467788888889887763 3344554444 899999999999999999885 889999999
Q ss_pred CCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCcc-CcCcccEEEecCCCCCC
Q 001161 617 PYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRI-HLELLKELNLSGCSKLK 695 (1134)
Q Consensus 617 ~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~-~l~~L~~L~Ls~~~~l~ 695 (1134)
.+|++..+|+++.++.+|..+++.+|+...- +...-.++.|++||... +.++.+|..+ ++.+|+.|+|..| .+.
T Consensus 145 ~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l---~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~N-ki~ 219 (565)
T KOG0472|consen 145 TNNQISSLPEDMVNLSKLSKLDLEGNKLKAL---PENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRN-KIR 219 (565)
T ss_pred cccccccCchHHHHHHHHHHhhccccchhhC---CHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhc-ccc
Confidence 9999999999999999999999999875443 23344599999999988 4567777777 6999999999996 466
Q ss_pred CcccccC-CCcceeEecCcCccccCcccc-CCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCC
Q 001161 696 RLPEISS-GNIETMHLDGTALEELPSSIE-CLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYL 773 (1134)
Q Consensus 696 ~~~~~~~-~~L~~L~L~~n~i~~lp~~~~-~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l 773 (1134)
.+|++.+ ..|.+|+++.|.|+.+|+... ++++|..|||.+|+ +++.|..++.+++|+.|++++|.+. .+|..++++
T Consensus 220 ~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl 297 (565)
T KOG0472|consen 220 FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL 297 (565)
T ss_pred cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence 7787766 789999999999999999855 89999999999998 6789999999999999999998754 678889999
Q ss_pred CCCcEEEccCCcCcccCcc------------------------------------------ccCCCCCCEEEecCCCCCC
Q 001161 774 EALDSLHAVGTAIRELPPS------------------------------------------IVRLKSVRAIYFGRNRGLS 811 (1134)
Q Consensus 774 ~~L~~L~L~~n~i~~lp~~------------------------------------------~~~l~~L~~L~l~~n~~~~ 811 (1134)
.|+.|.+.||.+..+-.. ...+.+.+.|+++.-+ .+
T Consensus 298 -hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q-lt 375 (565)
T KOG0472|consen 298 -HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ-LT 375 (565)
T ss_pred -eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc-cc
Confidence 999999999887532111 0112345556555443 22
Q ss_pred CCccccc------------------CCCC-------C-CCEEeccCCCCCCCccccccccCcceeecCCCCccccccchh
Q 001161 812 LPITFSV------------------DGLQ-------N-LRDLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPESII 865 (1134)
Q Consensus 812 ~~~~~~~------------------~~l~-------~-L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~ 865 (1134)
......| ..+| . ...+.+++|.+.-+|..+..+++|..|+|++|-+.++|..++
T Consensus 376 ~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~ 455 (565)
T KOG0472|consen 376 LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMG 455 (565)
T ss_pred cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhh
Confidence 2111111 1111 1 123445555555556667788899999999999999999999
Q ss_pred CCCCCcEEEeccccCCCccCCcC---CCcCeEeccCCcccccccCCCCCCCCccceeeeccCCCCCCccccccchHHHHH
Q 001161 866 QLSNLEWLFIRYCERLQSLPKLP---CNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDNFKLDPNDLGGIVKGALQ 942 (1134)
Q Consensus 866 ~l~~L~~L~Ls~n~~l~~lp~~~---~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~~~~~~~~ 942 (1134)
.+..|+.|+|++|+ -..+|... ..|+.+-+++ +.+..++.. ...++.+|..|||.+| .+..+ |..++
T Consensus 456 ~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtllas~-nqi~~vd~~-~l~nm~nL~tLDL~nN------dlq~I-Pp~Lg 525 (565)
T KOG0472|consen 456 SLVRLQTLNLSFNR-FRMLPECLYELQTLETLLASN-NQIGSVDPS-GLKNMRNLTTLDLQNN------DLQQI-PPILG 525 (565)
T ss_pred hhhhhheecccccc-cccchHHHhhHHHHHHHHhcc-ccccccChH-HhhhhhhcceeccCCC------chhhC-Chhhc
Confidence 99999999999984 34455432 3344444454 444544422 1246788899998888 66554 45799
Q ss_pred HhHHHHHHhHHhhhhc
Q 001161 943 KIQLLATARLKEAREK 958 (1134)
Q Consensus 943 ~l~~L~~L~L~~n~~~ 958 (1134)
+|++|++|++.+|.+.
T Consensus 526 nmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 526 NMTNLRHLELDGNPFR 541 (565)
T ss_pred cccceeEEEecCCccC
Confidence 9999999999999887
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=2.4e-26 Score=266.25 Aligned_cols=400 Identities=19% Similarity=0.219 Sum_probs=276.1
Q ss_pred ccccccCcccccccCccccccCCCccEEEEecCCcccCcceeeccCCCCcCeeEEEeecCCCCCCCCCCCC-cccceEee
Q 001161 537 GILLDMSKVKDINLHPNVFAKMPNLRILKFYNSMDEENKCKVSHFQGSEFTEVRYLHWHGYPLKSLPSNIH-PEKLVLLE 615 (1134)
Q Consensus 537 ~i~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~~~-l~~L~~L~ 615 (1134)
--.+|++++....++ ..+..+.+|+.|.++.|.+.. .-......++|++|.|.+|.+..+|..+. +++|+.|+
T Consensus 47 L~~l~lsnn~~~~fp-~~it~l~~L~~ln~s~n~i~~-----vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFP-IQITLLSHLRQLNLSRNYIRS-----VPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLD 120 (1081)
T ss_pred eEEeeccccccccCC-chhhhHHHHhhcccchhhHhh-----CchhhhhhhcchhheeccchhhcCchhHHhhhcccccc
Confidence 344566665544332 334556666666666553211 11112223777777888877777777764 77778888
Q ss_pred CCCCCccccchhhhccccchhhccccccCcCCCCC--------------CCCCcCCCCCcE-EEccCCCCCc--------
Q 001161 616 MPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPT--------------PLSTQHLNKLAI-LNLSGCGNLQ-------- 672 (1134)
Q Consensus 616 L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--------------~~~~~~l~~L~~-L~L~~~~~~~-------- 672 (1134)
+++|.+..+|..+..+..+..+..++|..+...+. ........+|++ |+|+.|.+..
T Consensus 121 lS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~ 200 (1081)
T KOG0618|consen 121 LSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLAN 200 (1081)
T ss_pred cchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccc
Confidence 88887777777776666666666666522111110 000111223333 6776665541
Q ss_pred --ccCC--------ccCcCcccEEEecCCCCCCCcccccCCCcceeEecCcCccccCccccCCCCCCeeeccCCcCCccc
Q 001161 673 --SLPD--------RIHLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSL 742 (1134)
Q Consensus 673 --~lp~--------~~~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~l 742 (1134)
.+-- ....++|+.|+.+.|......+.....+|++++++.|.+..+|++++.+.+|+.|++.+|.+ ..+
T Consensus 201 l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~l 279 (1081)
T KOG0618|consen 201 LEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VAL 279 (1081)
T ss_pred hhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH-Hhh
Confidence 1100 01346677778888877766666666899999999999999999999999999999999986 677
Q ss_pred CcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCcccc--------------------------CC
Q 001161 743 PSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIV--------------------------RL 796 (1134)
Q Consensus 743 p~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~--------------------------~l 796 (1134)
|..+....+|+.|.+..|. +..+|...+.+++|++|+|..|+|..+|..+. .+
T Consensus 280 p~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~ 358 (1081)
T KOG0618|consen 280 PLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNH 358 (1081)
T ss_pred HHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhh
Confidence 7778888888888888876 45677777888889999998888887775322 12
Q ss_pred CCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCcc-ccccccCcceeecCCCCccccccchhCCCCCcEEEe
Q 001161 797 KSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPE-SLGLLSLVTELHLEGNNFERIPESIIQLSNLEWLFI 875 (1134)
Q Consensus 797 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 875 (1134)
+.|+.|++.+|. ++......+.++++|+.|+|++|.+.++|. .+.++..|++|+||||+++.||..+.+++.|++|..
T Consensus 359 ~~Lq~LylanN~-Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 359 AALQELYLANNH-LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHHhcCc-ccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence 346677777776 555555567889999999999999999997 468899999999999999999999999999999998
Q ss_pred ccccCCCccCC--cCCCcCeEeccCCcccccccCCCCCC-CCccceeeeccCCCCCCccccccchHHHHHHhHHHHHHhH
Q 001161 876 RYCERLQSLPK--LPCNLIWLDAHHCTALESLPGLFPSS-NESYLRTLYLSDNFKLDPNDLGGIVKGALQKIQLLATARL 952 (1134)
Q Consensus 876 s~n~~l~~lp~--~~~~L~~L~l~~c~~l~~~~~~~~~~-~l~~L~~L~Ls~n~~L~~~~l~~~~~~~~~~l~~L~~L~L 952 (1134)
.+|.+ ..+|+ ..+.|+.+|++.|+. ..+. ++.. .-++|++|||++|..+ ......|..++.+...++
T Consensus 438 hsN~l-~~fPe~~~l~qL~~lDlS~N~L-~~~~--l~~~~p~p~LkyLdlSGN~~l------~~d~~~l~~l~~l~~~~i 507 (1081)
T KOG0618|consen 438 HSNQL-LSFPELAQLPQLKVLDLSCNNL-SEVT--LPEALPSPNLKYLDLSGNTRL------VFDHKTLKVLKSLSQMDI 507 (1081)
T ss_pred cCCce-eechhhhhcCcceEEecccchh-hhhh--hhhhCCCcccceeeccCCccc------ccchhhhHHhhhhhheec
Confidence 88765 45675 357899999997654 3322 1111 2278999999999432 223345666666666665
Q ss_pred Hhh
Q 001161 953 KEA 955 (1134)
Q Consensus 953 ~~n 955 (1134)
.-|
T Consensus 508 ~~~ 510 (1081)
T KOG0618|consen 508 TLN 510 (1081)
T ss_pred ccC
Confidence 544
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.4e-23 Score=271.98 Aligned_cols=329 Identities=29% Similarity=0.420 Sum_probs=234.4
Q ss_pred CeeEEEeecCCCC-------CCCCCCCC--cccceEeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCC
Q 001161 587 TEVRYLHWHGYPL-------KSLPSNIH--PEKLVLLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHL 657 (1134)
Q Consensus 587 ~~L~~L~l~~~~l-------~~lp~~~~--l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l 657 (1134)
.+|++|.+..+.. ..+|..+. +.+|+.|++.++.++.+|..+ ...+|+.|++.+++ +..+ +..+..+
T Consensus 558 ~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L--~~~~~~l 633 (1153)
T PLN03210 558 RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK-LEKL--WDGVHSL 633 (1153)
T ss_pred ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc-cccc--ccccccC
Confidence 7888888865532 14566553 567889999888888887766 46777888877765 3333 3456677
Q ss_pred CCCcEEEccCCCCCcccCCccCcCcccEEEecCCCCCCCcccccCCCcceeEecCcCccccCccccCCCCCCeeeccCCc
Q 001161 658 NKLAILNLSGCGNLQSLPDRIHLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSSIECLSKLSRLDLADCK 737 (1134)
Q Consensus 658 ~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~ 737 (1134)
++|+.|+|++|..++.+|....+++|++|+|++|..+. .+|.+++++++|+.|++++|.
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~---------------------~lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLV---------------------ELPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred CCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcc---------------------ccchhhhccCCCCEEeCCCCC
Confidence 78888888877777777765567777777777776544 567778888888888888888
Q ss_pred CCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCC------C
Q 001161 738 SLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGL------S 811 (1134)
Q Consensus 738 ~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~------~ 811 (1134)
.++.+|..+ ++++|+.|++++|..++.+|.. .++|+.|++++|.+..+|..+ .+++|+.|.+.++... .
T Consensus 693 ~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~ 767 (1153)
T PLN03210 693 NLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQ 767 (1153)
T ss_pred CcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhcccccc
Confidence 888888765 7888888888888877777754 467888888888888888765 5778888887754311 1
Q ss_pred CCcccccCCCCCCCEEeccCCC-CCCCccccccccCcceeecCCC-CccccccchhCCCCCcEEEeccccCCCccCCcCC
Q 001161 812 LPITFSVDGLQNLRDLNLNDCG-ITELPESLGLLSLVTELHLEGN-NFERIPESIIQLSNLEWLFIRYCERLQSLPKLPC 889 (1134)
Q Consensus 812 ~~~~~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp~~~~ 889 (1134)
...+.....+++|+.|+|++|. +..+|..++++++|+.|+|++| ++..+|..+ ++++|+.|+|++|..+..+|..+.
T Consensus 768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~ 846 (1153)
T PLN03210 768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIST 846 (1153)
T ss_pred ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccccc
Confidence 1111223345788888888885 4468888888888888888886 577888665 788888888888888888888878
Q ss_pred CcCeEeccCCcccccccCCCCCCCCccceeeeccCCCCCCccccccchHHHHHHhHHHHHHhHHhh
Q 001161 890 NLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDNFKLDPNDLGGIVKGALQKIQLLATARLKEA 955 (1134)
Q Consensus 890 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~~~~~~~~~l~~L~~L~L~~n 955 (1134)
+|+.|++++| .++.+|..+ ..+++|+.|+|++|.+|. . +|....++++|+.+++++|
T Consensus 847 nL~~L~Ls~n-~i~~iP~si--~~l~~L~~L~L~~C~~L~-----~-l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 847 NISDLNLSRT-GIEEVPWWI--EKFSNLSFLDMNGCNNLQ-----R-VSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred ccCEeECCCC-CCccChHHH--hcCCCCCEEECCCCCCcC-----c-cCcccccccCCCeeecCCC
Confidence 8888888875 344555332 467778888888774443 2 2223445555666665555
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=1e-22 Score=236.47 Aligned_cols=345 Identities=20% Similarity=0.148 Sum_probs=189.9
Q ss_pred eEEEeecCCCCCCCCCCCC-cccceEeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccC
Q 001161 589 VRYLHWHGYPLKSLPSNIH-PEKLVLLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSG 667 (1134)
Q Consensus 589 L~~L~l~~~~l~~lp~~~~-l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~ 667 (1134)
|+.|++++|.+.++|..+. +.+|+.|+++.|.|..+|....++.+|+.+.|..+..... |.++..+++|++|+++.
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~l---P~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSL---PASISELKNLQYLDLSF 123 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcC---chhHHhhhcccccccch
Confidence 5555555555555554443 4455555555555555554445555555555544432211 33444555555555555
Q ss_pred CCCCcccCCcc-CcCcccEEEecCC-------------------CCCCCcccccCCCcc-eeEecCcCccccCccccCCC
Q 001161 668 CGNLQSLPDRI-HLELLKELNLSGC-------------------SKLKRLPEISSGNIE-TMHLDGTALEELPSSIECLS 726 (1134)
Q Consensus 668 ~~~~~~lp~~~-~l~~L~~L~Ls~~-------------------~~l~~~~~~~~~~L~-~L~L~~n~i~~lp~~~~~l~ 726 (1134)
|.+. .+|..+ .+..++.+..++| .....++.... +++ .|+|..|.+. ...+.++.
T Consensus 124 N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~-~l~~~ldLr~N~~~--~~dls~~~ 199 (1081)
T KOG0618|consen 124 NHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIY-NLTHQLDLRYNEME--VLDLSNLA 199 (1081)
T ss_pred hccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchh-hhheeeecccchhh--hhhhhhcc
Confidence 3332 233322 3444444444444 33333332222 222 3666666665 22355566
Q ss_pred CCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecC
Q 001161 727 KLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGR 806 (1134)
Q Consensus 727 ~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~ 806 (1134)
+|+.|....|++... ...-++|+.|+.++|.+....+. ..-.+|++++++.|.++.+|.++..+.+|+.|...+
T Consensus 200 ~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~ 273 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANH 273 (1081)
T ss_pred chhhhhhhhcccceE----EecCcchheeeeccCcceeeccc--cccccceeeecchhhhhcchHHHHhcccceEecccc
Confidence 666666666553322 12446788888888877744332 234688899999999999998888899999999988
Q ss_pred CCCCCCCcccccCCCCCCCEEeccCCCCCCCccccccccCcceeecCCCCccccccchhC-CC-CCcEEEeccccCCCcc
Q 001161 807 NRGLSLPITFSVDGLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPESIIQ-LS-NLEWLFIRYCERLQSL 884 (1134)
Q Consensus 807 n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~-l~-~L~~L~Ls~n~~l~~l 884 (1134)
|.+ ...+..+....+|+.|.+..|.+..+|+....+++|++|+|..|+|..+|+.+.. +. .|+.|+.+.|++. .+
T Consensus 274 N~l--~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~l 350 (1081)
T KOG0618|consen 274 NRL--VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TL 350 (1081)
T ss_pred hhH--HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-cc
Confidence 874 2334455677888889999999888888888888999999999988888864322 11 2444444444322 22
Q ss_pred C----CcCCCcCeEeccCCcccccccCCCCCCCCccceeeeccCCCCCCccccccchHHHHHHhHHHHHHhHHhhhh
Q 001161 885 P----KLPCNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDNFKLDPNDLGGIVKGALQKIQLLATARLKEARE 957 (1134)
Q Consensus 885 p----~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~~ 957 (1134)
| ...+.|+.|.+.+|......- -+..+..+|+.|+|++| .+..+....+.+++.|+.|+|++|++
T Consensus 351 p~~~e~~~~~Lq~LylanN~Ltd~c~--p~l~~~~hLKVLhLsyN------rL~~fpas~~~kle~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 351 PSYEENNHAALQELYLANNHLTDSCF--PVLVNFKHLKVLHLSYN------RLNSFPASKLRKLEELEELNLSGNKL 419 (1081)
T ss_pred ccccchhhHHHHHHHHhcCcccccch--hhhccccceeeeeeccc------ccccCCHHHHhchHHhHHHhcccchh
Confidence 2 123345555555543322211 11134555666666665 33333333334444444444444433
No 16
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.81 E-value=1.4e-20 Score=185.00 Aligned_cols=129 Identities=36% Similarity=0.577 Sum_probs=115.0
Q ss_pred EEEcccccccccchHHHHHHHHhhC--CCceEecC-CCCCCCcchHHHHHHHHhcccEEEEecCCcccchhhHHHHHHHH
Q 001161 24 VFLSFRGEDTRENFTSHLYSALSRE--SIETFIDD-DLRRGDEISQSLLDAIEASSISIIVFSERYASSRWCLDELLKIL 100 (1134)
Q Consensus 24 vFis~~~~D~r~~~~~~l~~~l~~~--g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~~El~~~~ 100 (1134)
|||||++.|++.+|+++|..+|++. |+++|+++ |+.+|..+.+++.++|++||++|+|+|++|++|+||+.|+..|+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999555799999999999999 99999999 99999999999999999999999999999999999999999999
Q ss_pred HhhhccC--cEEEeEEeeecccccc-cccccchhhHHhhcccCh-----hhHHHHHHHHH
Q 001161 101 ECKKEYA--QIVIPACYRVDPSHVR-KQTGNFGDSFLKLGERFP-----DKMQSWRNALT 152 (1134)
Q Consensus 101 ~~~~~~~--~~v~pvf~~v~p~~vr-~q~g~~~~~~~~~~~~~~-----~~~~~w~~al~ 152 (1134)
++....+ .+|+||||+|.+++++ .+.+.|+..|..+..... .....|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9987655 8999999999999999 799999999988876433 46788998764
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=2.6e-19 Score=216.57 Aligned_cols=260 Identities=22% Similarity=0.246 Sum_probs=178.9
Q ss_pred EEEeecCCCCCCCCCCCCcccceEeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCC
Q 001161 590 RYLHWHGYPLKSLPSNIHPEKLVLLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCG 669 (1134)
Q Consensus 590 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~ 669 (1134)
..|+++++.++++|..+ +.+|+.|++++|+++.+|.. +++|+.|++++| .++.+|. ..++|+.|+|++|.
T Consensus 204 ~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~-----lp~sL~~L~Ls~N~ 273 (788)
T PRK15387 204 AVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPV-----LPPGLLELSIFSNP 273 (788)
T ss_pred cEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccC-----cccccceeeccCCc
Confidence 34566666666666654 24566666666666666542 356666666664 3334331 13567777777765
Q ss_pred CCcccCCccCcCcccEEEecCCCCCCCcccccCCCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCC
Q 001161 670 NLQSLPDRIHLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKL 749 (1134)
Q Consensus 670 ~~~~lp~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l 749 (1134)
+. .+|.. ..+|+.|+|++|. +..+|.. .++|+.|+|++|.+..+|... .+|+.|++++|.+. .+|. ..
T Consensus 274 L~-~Lp~l--p~~L~~L~Ls~N~-Lt~LP~~-p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~-~LP~---lp 341 (788)
T PRK15387 274 LT-HLPAL--PSGLCKLWIFGNQ-LTSLPVL-PPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLT-SLPT---LP 341 (788)
T ss_pred hh-hhhhc--hhhcCEEECcCCc-ccccccc-ccccceeECCCCccccCCCCc---ccccccccccCccc-cccc---cc
Confidence 43 34442 3567777887764 4455542 257888888888888877532 45777888888754 4554 22
Q ss_pred CCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEec
Q 001161 750 KSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNL 829 (1134)
Q Consensus 750 ~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L 829 (1134)
.+|+.|+|++|++.. +|.. ..+|+.|++++|.+..+|.. ..+|+.|++++|. +..... ..++|+.|++
T Consensus 342 ~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~-Lt~LP~----l~s~L~~LdL 409 (788)
T PRK15387 342 SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNR-LTSLPV----LPSELKELMV 409 (788)
T ss_pred cccceEecCCCccCC-CCCC---CcccceehhhccccccCccc---ccccceEEecCCc-ccCCCC----cccCCCEEEc
Confidence 478888888887654 5543 35778888889988888754 3578899999887 443221 2367999999
Q ss_pred cCCCCCCCccccccccCcceeecCCCCccccccchhCCCCCcEEEeccccCCCccCC
Q 001161 830 NDCGITELPESLGLLSLVTELHLEGNNFERIPESIIQLSNLEWLFIRYCERLQSLPK 886 (1134)
Q Consensus 830 s~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp~ 886 (1134)
++|.++.+|.. +.+|+.|+|++|+|+.+|..+.++++|+.|+|++|++.+..|.
T Consensus 410 S~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 410 SGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred cCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHH
Confidence 99999998864 3578899999999999999999999999999999998877654
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=1.9e-18 Score=209.05 Aligned_cols=226 Identities=26% Similarity=0.281 Sum_probs=127.5
Q ss_pred CcccEEEecCCCCCCCcccccCCCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCC
Q 001161 681 ELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGC 760 (1134)
Q Consensus 681 ~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~ 760 (1134)
++|++|+|++| .++.+|.. ..+|+.|++++|.+..+|.. +++|+.|+|++|++. .+|. .+++|+.|++++|
T Consensus 242 ~~Lk~LdLs~N-~LtsLP~l-p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N 312 (788)
T PRK15387 242 PELRTLEVSGN-QLTSLPVL-PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDN 312 (788)
T ss_pred CCCcEEEecCC-ccCcccCc-ccccceeeccCCchhhhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCC
Confidence 44455555443 22233322 13455555555555555542 234555666666532 3343 2355666666666
Q ss_pred CCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccc
Q 001161 761 SNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPES 840 (1134)
Q Consensus 761 ~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~ 840 (1134)
++.+ +|.. ..+|+.|++++|.++.+|.. ..+|+.|+|++|+ ++.... ..++|+.|++++|.|+.+|..
T Consensus 313 ~L~~-Lp~l---p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~-Ls~LP~----lp~~L~~L~Ls~N~L~~LP~l 380 (788)
T PRK15387 313 QLAS-LPAL---PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQ-LASLPT----LPSELYKLWAYNNRLTSLPAL 380 (788)
T ss_pred cccc-CCCC---cccccccccccCcccccccc---ccccceEecCCCc-cCCCCC----CCcccceehhhccccccCccc
Confidence 5443 3332 13455666666666665531 2356666666665 332111 124566777777777776653
Q ss_pred cccccCcceeecCCCCccccccchhCCCCCcEEEeccccCCCccCCcCCCcCeEeccCCcccccccCCCCCCCCccceee
Q 001161 841 LGLLSLVTELHLEGNNFERIPESIIQLSNLEWLFIRYCERLQSLPKLPCNLIWLDAHHCTALESLPGLFPSSNESYLRTL 920 (1134)
Q Consensus 841 l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 920 (1134)
+++|+.|+|++|+|+.+|.. .++|+.|++++|++. .+|..+.+|+.|++++|. +..+|..+ ..+++|+.|
T Consensus 381 ---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~Ls-sIP~l~~~L~~L~Ls~Nq-Lt~LP~sl--~~L~~L~~L 450 (788)
T PRK15387 381 ---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLT-SLPMLPSGLLSLSVYRNQ-LTRLPESL--IHLSSETTV 450 (788)
T ss_pred ---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCC-CCCcchhhhhhhhhccCc-ccccChHH--hhccCCCeE
Confidence 34677777777777777743 356777778777654 467777777777777754 34555433 356777888
Q ss_pred eccCCCCCCccccccchHHHHHH
Q 001161 921 YLSDNFKLDPNDLGGIVKGALQK 943 (1134)
Q Consensus 921 ~Ls~n~~L~~~~l~~~~~~~~~~ 943 (1134)
+|++| .+++..+..+..
T Consensus 451 dLs~N------~Ls~~~~~~L~~ 467 (788)
T PRK15387 451 NLEGN------PLSERTLQALRE 467 (788)
T ss_pred ECCCC------CCCchHHHHHHH
Confidence 88777 666655554433
No 19
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.76 E-value=2.2e-18 Score=170.20 Aligned_cols=134 Identities=43% Similarity=0.684 Sum_probs=114.9
Q ss_pred CccEEEcccc-cccccchHHHHHHHHhhCCCceEecCCCCCCCcchHHHHHHHHhcccEEEEecCCcccchhhHHHHHHH
Q 001161 21 QYDVFLSFRG-EDTRENFTSHLYSALSRESIETFIDDDLRRGDEISQSLLDAIEASSISIIVFSERYASSRWCLDELLKI 99 (1134)
Q Consensus 21 ~~dvFis~~~-~D~r~~~~~~l~~~l~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~~El~~~ 99 (1134)
.|||||||++ +|+++.|+.+|..+|...|+.+|.|+....|... .+|.++|++|+++|+|+|++|+.|.||..|+..+
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 5999999999 5667999999999999999999999754433333 3999999999999999999999999999999999
Q ss_pred HHhhhc-cCcEEEeEEeeecccccccccccchhhHHhhcccChhhH--HHHHHHHHHhc
Q 001161 100 LECKKE-YAQIVIPACYRVDPSHVRKQTGNFGDSFLKLGERFPDKM--QSWRNALTEAA 155 (1134)
Q Consensus 100 ~~~~~~-~~~~v~pvf~~v~p~~vr~q~g~~~~~~~~~~~~~~~~~--~~w~~al~~~~ 155 (1134)
+.+..+ ...+||||+|+..|+.+..+.+.++.++.....++.+.. +.|+.++..++
T Consensus 80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l~ 138 (140)
T smart00255 80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKERFWKKALYAVP 138 (140)
T ss_pred HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhHHHHHHHHHHhc
Confidence 988754 557999999999999999999999999988755555444 58999887765
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=5.7e-18 Score=206.68 Aligned_cols=265 Identities=23% Similarity=0.314 Sum_probs=177.4
Q ss_pred CCcEEEccCCCCCcccCCccCcCcccEEEecCCCCCCCcccccCCCcceeEecCcCccccCccccCCCCCCeeeccCCcC
Q 001161 659 KLAILNLSGCGNLQSLPDRIHLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSSIECLSKLSRLDLADCKS 738 (1134)
Q Consensus 659 ~L~~L~L~~~~~~~~lp~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~ 738 (1134)
+...|+++++.+. .+|..+ .++|+.|+|++|. +..+|.....+|+.|++++|.++.+|..+. ++|+.|+|++|.+
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I-p~~L~~L~Ls~N~-LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI-PEQITTLILDNNE-LKSLPENLQGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred CceEEEeCCCCcC-cCCccc-ccCCcEEEecCCC-CCcCChhhccCCCEEECCCCccccCChhhh--ccccEEECcCCcc
Confidence 4556777665433 455533 2467777777763 445665555677788888887777776543 4678888888775
Q ss_pred CcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCccccc
Q 001161 739 LKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSV 818 (1134)
Q Consensus 739 ~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 818 (1134)
. .+|..+. ++|+.|++++|++. .+|..+. ++|+.|++++|.++.+|..+. ++|+.|++++|. +... +..
T Consensus 254 ~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~L-P~~- 322 (754)
T PRK15370 254 T-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTAL-PET- 322 (754)
T ss_pred C-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccC-Ccc-
Confidence 4 5665543 47888888877655 4666543 478888888888887776543 467888888887 3322 111
Q ss_pred CCCCCCCEEeccCCCCCCCccccccccCcceeecCCCCccccccchhCCCCCcEEEeccccCCCccC-CcCCCcCeEecc
Q 001161 819 DGLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPESIIQLSNLEWLFIRYCERLQSLP-KLPCNLIWLDAH 897 (1134)
Q Consensus 819 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp-~~~~~L~~L~l~ 897 (1134)
-.++|+.|++++|.++.+|..+. ++|+.|+|++|+|+.+|..+ .++|+.|+|++|++. .+| .++.+|+.|+++
T Consensus 323 -l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~~sL~~LdLs 396 (754)
T PRK15370 323 -LPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALT-NLPENLPAALQIMQAS 396 (754)
T ss_pred -ccccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCC-CCCHhHHHHHHHHhhc
Confidence 23678888888888888887653 68899999999888888765 368899999988766 445 455678889998
Q ss_pred CCcccccccCCCCC--CCCccceeeeccCCCCCCccccccchHHHHHHhHHHHHHhHHhhhhcC
Q 001161 898 HCTALESLPGLFPS--SNESYLRTLYLSDNFKLDPNDLGGIVKGALQKIQLLATARLKEAREKI 959 (1134)
Q Consensus 898 ~c~~l~~~~~~~~~--~~l~~L~~L~Ls~n~~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 959 (1134)
+|.. ..+|..++. ..++++..|+|.+| .++ ...+++|+.| ++.+.+.|
T Consensus 397 ~N~L-~~LP~sl~~~~~~~~~l~~L~L~~N------pls------~~tl~~L~~L-l~s~~~~g 446 (754)
T PRK15370 397 RNNL-VRLPESLPHFRGEGPQPTRIIVEYN------PFS------ERTIQNMQRL-MSSVGYQG 446 (754)
T ss_pred cCCc-ccCchhHHHHhhcCCCccEEEeeCC------Ccc------HHHHHHHHHh-hhcccccC
Confidence 8654 456544332 24567888998888 443 2345555555 34454444
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.74 E-value=9.2e-18 Score=204.85 Aligned_cols=246 Identities=22% Similarity=0.341 Sum_probs=146.9
Q ss_pred eeEEEeecCCCCCCCCCCCCcccceEeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccC
Q 001161 588 EVRYLHWHGYPLKSLPSNIHPEKLVLLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSG 667 (1134)
Q Consensus 588 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~ 667 (1134)
+...|+++++.++++|..+ +++|+.|+|++|+|+.+|..+. .+|+.|++++|+ +..+|. .+ .++|+.|+|++
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~--~l--~~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPA--TL--PDTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCCh--hh--hccccEEECcC
Confidence 4456777777777777655 4678888888888877765432 244444444432 222221 11 12344445544
Q ss_pred CCCCcccCCccCcCcccEEEecCCCCCCCcccccCCCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccC
Q 001161 668 CGNLQSLPDRIHLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLC 747 (1134)
Q Consensus 668 ~~~~~~lp~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~ 747 (1134)
|.+. .+|.....+|+.|++++|.+..+|..+. ++|+.|+|++|++. .+|..+
T Consensus 251 N~L~------------------------~LP~~l~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l- 302 (754)
T PRK15370 251 NRIT------------------------ELPERLPSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR-TLPAHL- 302 (754)
T ss_pred CccC------------------------cCChhHhCCCCEEECcCCccCccccccC--CCCcEEECCCCccc-cCcccc-
Confidence 4332 3333333455555555555555555442 35666666666533 344332
Q ss_pred CCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEE
Q 001161 748 KLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDL 827 (1134)
Q Consensus 748 ~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 827 (1134)
.++|+.|++++|.+.. +|..+. ++|+.|++++|.++.+|..+. ++|+.|++++|+ +... +..+ .++|+.|
T Consensus 303 -p~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~-L~~L-P~~l--p~~L~~L 372 (754)
T PRK15370 303 -PSGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQ-ITVL-PETL--PPTITTL 372 (754)
T ss_pred -hhhHHHHHhcCCcccc-CCcccc--ccceeccccCCccccCChhhc--CcccEEECCCCC-CCcC-Chhh--cCCcCEE
Confidence 1356666666665543 443332 567777777777777766543 577777777776 3321 2222 3578888
Q ss_pred eccCCCCCCCccccccccCcceeecCCCCccccccchh----CCCCCcEEEeccccCC
Q 001161 828 NLNDCGITELPESLGLLSLVTELHLEGNNFERIPESII----QLSNLEWLFIRYCERL 881 (1134)
Q Consensus 828 ~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~----~l~~L~~L~Ls~n~~l 881 (1134)
+|++|+++.+|..+. .+|+.|++++|+|+.+|..+. .++++..|+|.+|++.
T Consensus 373 dLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 373 DVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred ECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 888888888887654 368888888888887776543 3577888888888765
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.69 E-value=5e-19 Score=187.59 Aligned_cols=263 Identities=19% Similarity=0.233 Sum_probs=162.6
Q ss_pred EeecCCCCCCCCCCCCcccceEeeCCCCCccccchh-hhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCC
Q 001161 592 LHWHGYPLKSLPSNIHPEKLVLLEMPYSNIEQLFDI-VQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGN 670 (1134)
Q Consensus 592 L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~ 670 (1134)
.+.++-.++.+|.++ ++.-++++|..|+|+.+|++ ++.+++|+.|+|++|+.- .+ .|..|..+++|..|-+-+++.
T Consensus 51 VdCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I-~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FI-APDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred EEccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hc-ChHhhhhhHhhhHHHhhcCCc
Confidence 345566777888766 66788899999999998765 567788888888876532 22 266788888888888877666
Q ss_pred CcccCCcc--CcCcccEEEecCCCCCCCcccccC--CCcceeEecCcCccccCc-cccCCCCCCeeeccCCcCC------
Q 001161 671 LQSLPDRI--HLELLKELNLSGCSKLKRLPEISS--GNIETMHLDGTALEELPS-SIECLSKLSRLDLADCKSL------ 739 (1134)
Q Consensus 671 ~~~lp~~~--~l~~L~~L~Ls~~~~l~~~~~~~~--~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~------ 739 (1134)
+..+|... ++..|+.|.+.-|..--.....+. +++..|.+..|.+..++. .+..+..++.+.+..|...
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP 207 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccc
Confidence 77777654 578888877776654333333322 567777788888888876 5777888888887777622
Q ss_pred ------cccCcccCCCCCCcEEeecCCCC-------------------------CCCCC-ccccCCCCCcEEEccCCcCc
Q 001161 740 ------KSLPSGLCKLKSLDVLNIDGCSN-------------------------LQRLP-EELGYLEALDSLHAVGTAIR 787 (1134)
Q Consensus 740 ------~~lp~~l~~l~~L~~L~L~~~~~-------------------------~~~~p-~~~~~l~~L~~L~L~~n~i~ 787 (1134)
...|..++......-..+.+..+ ...-| ..|..+++|++|+|++|.|+
T Consensus 208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 12233333333222222221111 11111 23555666666666666666
Q ss_pred ccCc-cccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCC-ccccccccCcceeecCCCCcc
Q 001161 788 ELPP-SIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITEL-PESLGLLSLVTELHLEGNNFE 858 (1134)
Q Consensus 788 ~lp~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~ 858 (1134)
.+.. +|..+..++.|.|..|+ +.......|.++..|+.|+|++|+|+.+ |.+|..+.+|.+|+|-.|.+.
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 5533 45556666666666665 4444455566666666666666666643 445566666666666665543
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=2e-17 Score=155.71 Aligned_cols=167 Identities=30% Similarity=0.504 Sum_probs=89.6
Q ss_pred cCCccCcCcccEEEecCCCCCCCcccccC-CCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCC
Q 001161 674 LPDRIHLELLKELNLSGCSKLKRLPEISS-GNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSL 752 (1134)
Q Consensus 674 lp~~~~l~~L~~L~Ls~~~~l~~~~~~~~-~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L 752 (1134)
+|..+.+.+...|.||+|......|.+.. .+|+.|++.+|+|+++|.+++.+++|+.|+++-|+ +..+|..|+.++.|
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~l 104 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPAL 104 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchh
Confidence 33344444555555555433332233322 44444444555555555555555555555555544 34455555555555
Q ss_pred cEEeecCCCCCC-CCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccC
Q 001161 753 DVLNIDGCSNLQ-RLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLND 831 (1134)
Q Consensus 753 ~~L~L~~~~~~~-~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~ 831 (1134)
+.|+|.+|++.+ .+|..|..|+.|+.|+|++|.+.-+|..++++++ |+.|.+..
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~-------------------------lqil~lrd 159 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTN-------------------------LQILSLRD 159 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcc-------------------------eeEEeecc
Confidence 555555554432 3444444455555555555555444444444444 44444444
Q ss_pred CCCCCCccccccccCcceeecCCCCccccccchhC
Q 001161 832 CGITELPESLGLLSLVTELHLEGNNFERIPESIIQ 866 (1134)
Q Consensus 832 n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~ 866 (1134)
|.+.++|..++.++.|++|++.+|+++.+|+.+.+
T Consensus 160 ndll~lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 160 NDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred CchhhCcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 55666777777777888888888887777765544
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.60 E-value=8.4e-17 Score=170.91 Aligned_cols=300 Identities=19% Similarity=0.160 Sum_probs=187.2
Q ss_pred CeeEEEeecCCCCCCCCCCC--CcccceEeeCCCCCcccc-chhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEE
Q 001161 587 TEVRYLHWHGYPLKSLPSNI--HPEKLVLLEMPYSNIEQL-FDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAIL 663 (1134)
Q Consensus 587 ~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 663 (1134)
.+-..+.|..|.|++||+.. .+++|+.|||++|+|+.+ |+.++.+.+|..|.+.++|.++.+|. ..|+.|..|+.|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k-~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK-GAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh-hHhhhHHHHHHH
Confidence 34556778888888888775 388888888888888887 66788888888888888887877763 455555555555
Q ss_pred EccCCCCCcccCCcc-------------------------CcCcccEEEecCCCCCC------------CcccccC----
Q 001161 664 NLSGCGNLQSLPDRI-------------------------HLELLKELNLSGCSKLK------------RLPEISS---- 702 (1134)
Q Consensus 664 ~L~~~~~~~~lp~~~-------------------------~l~~L~~L~Ls~~~~l~------------~~~~~~~---- 702 (1134)
.+.-|.+.-...+.+ .+..++.+.+..|.... ..|....
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 555443332222222 34455555555443110 0000000
Q ss_pred --------------------CCccee----EecCcCccccCc-cccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEee
Q 001161 703 --------------------GNIETM----HLDGTALEELPS-SIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNI 757 (1134)
Q Consensus 703 --------------------~~L~~L----~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L 757 (1134)
..++.+ ....+.....|. .|..|++|+.|+|++|++...-+.+|.++..|+.|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 011111 111112222333 2778889999999999988888888889999999999
Q ss_pred cCCCCCCCCCccccCCCCCcEEEccCCcCccc-CccccCCCCCCEEEecCCCCCCCCc---------------ccccCCC
Q 001161 758 DGCSNLQRLPEELGYLEALDSLHAVGTAIREL-PPSIVRLKSVRAIYFGRNRGLSLPI---------------TFSVDGL 821 (1134)
Q Consensus 758 ~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~~---------------~~~~~~l 821 (1134)
..|++...-...|.++..|+.|+|.+|+|+.+ |..|..+.+|..|.|-.|...-.-. ...-.+.
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p 385 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSP 385 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCC
Confidence 99887666666788889999999999999855 4456678888888888776221100 0011222
Q ss_pred CCCCEEeccCCCCCC----Ccccccc-------------------------------ccCcceeecCCCCccccccchhC
Q 001161 822 QNLRDLNLNDCGITE----LPESLGL-------------------------------LSLVTELHLEGNNFERIPESIIQ 866 (1134)
Q Consensus 822 ~~L~~L~Ls~n~l~~----lp~~l~~-------------------------------l~~L~~L~Ls~n~l~~lp~~l~~ 866 (1134)
..++.+.++...+.+ -|+..+. ...-.+|++.+|.++.+|.. .
T Consensus 386 ~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~~vp~~--~ 463 (498)
T KOG4237|consen 386 GFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAITSVPDE--L 463 (498)
T ss_pred chhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhcccCHH--H
Confidence 345566665543321 1111110 11245788999999999976 6
Q ss_pred CCCCcEEEeccccCCCccCCcCCC
Q 001161 867 LSNLEWLFIRYCERLQSLPKLPCN 890 (1134)
Q Consensus 867 l~~L~~L~Ls~n~~l~~lp~~~~~ 890 (1134)
+.+| .+|+++|++..--...+++
T Consensus 464 ~~~l-~~dls~n~i~~Lsn~tf~n 486 (498)
T KOG4237|consen 464 LRSL-LLDLSNNRISSLSNYTFSN 486 (498)
T ss_pred Hhhh-hcccccCceehhhcccccc
Confidence 7778 8999998865433333333
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.53 E-value=2.1e-15 Score=171.71 Aligned_cols=234 Identities=22% Similarity=0.253 Sum_probs=137.9
Q ss_pred cCccccCCCCCCeeeccCCcCC------cccCcccCCCCCCcEEeecCCCCCCCCCccccCCCC---CcEEEccCCcCcc
Q 001161 718 LPSSIECLSKLSRLDLADCKSL------KSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEA---LDSLHAVGTAIRE 788 (1134)
Q Consensus 718 lp~~~~~l~~L~~L~L~~n~~~------~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~---L~~L~L~~n~i~~ 788 (1134)
++..+...++|++|+++++... ..++..+..+++|+.|++++|.+....+..+..+.+ |++|++++|.+..
T Consensus 43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~ 122 (319)
T cd00116 43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD 122 (319)
T ss_pred HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch
Confidence 4444555666666666666543 122334556667777777777666555544444444 7777777777652
Q ss_pred -----cCccccCC-CCCCEEEecCCCCCCCC----cccccCCCCCCCEEeccCCCCCC-----CccccccccCcceeecC
Q 001161 789 -----LPPSIVRL-KSVRAIYFGRNRGLSLP----ITFSVDGLQNLRDLNLNDCGITE-----LPESLGLLSLVTELHLE 853 (1134)
Q Consensus 789 -----lp~~~~~l-~~L~~L~l~~n~~~~~~----~~~~~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls 853 (1134)
+...+..+ ++|+.|++++|. ++.. ....+..+++|++|++++|.++. ++..+..+++|+.|+|+
T Consensus 123 ~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 201 (319)
T cd00116 123 RGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLN 201 (319)
T ss_pred HHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEecc
Confidence 22344455 777777777776 3321 12234566778888888887772 34445556788888888
Q ss_pred CCCcc-----ccccchhCCCCCcEEEeccccCCCc--------cCCcCCCcCeEeccCCccc----ccccCCCCCCCCcc
Q 001161 854 GNNFE-----RIPESIIQLSNLEWLFIRYCERLQS--------LPKLPCNLIWLDAHHCTAL----ESLPGLFPSSNESY 916 (1134)
Q Consensus 854 ~n~l~-----~lp~~l~~l~~L~~L~Ls~n~~l~~--------lp~~~~~L~~L~l~~c~~l----~~~~~~~~~~~l~~ 916 (1134)
+|.++ .++..+..+++|++|++++|++... ++...+.|++|++++|... ..+...+ ..+++
T Consensus 202 ~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~--~~~~~ 279 (319)
T cd00116 202 NNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVL--AEKES 279 (319)
T ss_pred CCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHH--hcCCC
Confidence 88775 3445566778888888888876531 1112367888888887543 1111111 24478
Q ss_pred ceeeeccCCCCCCccccccchHHHHHHh-HHHHHHhHHhhh
Q 001161 917 LRTLYLSDNFKLDPNDLGGIVKGALQKI-QLLATARLKEAR 956 (1134)
Q Consensus 917 L~~L~Ls~n~~L~~~~l~~~~~~~~~~l-~~L~~L~L~~n~ 956 (1134)
|+++++++| .++..... ....++... ..|+++++.+|+
T Consensus 280 L~~l~l~~N-~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 280 LLELDLRGN-KFGEEGAQ-LLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred ccEEECCCC-CCcHHHHH-HHHHHHhhcCCchhhcccCCCC
Confidence 899998888 22222111 122233333 566677666653
No 26
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=5.1e-16 Score=146.30 Aligned_cols=155 Identities=25% Similarity=0.336 Sum_probs=95.6
Q ss_pred CCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEe
Q 001161 725 LSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYF 804 (1134)
Q Consensus 725 l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l 804 (1134)
+.+++.|.|++|++ ..+|+.+..+.+|+.|++++|+ ...+|..+..++.|+.|+++-|.+..+|..++.++.|+.|+|
T Consensus 32 ~s~ITrLtLSHNKl-~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHNKL-TVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccCce-eecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 33444444444442 2233334444444444444433 233444444555555555555555555555555555555555
Q ss_pred cCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccccccccCcceeecCCCCccccccchhCCCCCcEEEeccccCC
Q 001161 805 GRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPESIIQLSNLEWLFIRYCERL 881 (1134)
Q Consensus 805 ~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l 881 (1134)
++|+.-....+..|-.+..|+.|+|++|.+.-+|..++.+++|+.|.+..|.+-++|..++.+..|++|++.+|++.
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence 55553334444455566667777777777777888888888888888888888888888888888888888887754
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.47 E-value=5.8e-15 Score=168.13 Aligned_cols=37 Identities=19% Similarity=0.085 Sum_probs=17.8
Q ss_pred cCcceeecCCCCcc-----ccccchhCCCCCcEEEeccccCC
Q 001161 845 SLVTELHLEGNNFE-----RIPESIIQLSNLEWLFIRYCERL 881 (1134)
Q Consensus 845 ~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~n~~l 881 (1134)
+.|+.|++++|.++ .+...+..+++|++|++++|.+.
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 45555555555543 22333444455555555555544
No 28
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.44 E-value=3.7e-14 Score=131.17 Aligned_cols=87 Identities=31% Similarity=0.547 Sum_probs=75.9
Q ss_pred EEEcccccccccchHHHHHHHHhhCCCceEecCCCCCCCcchHHHHHHHHhcccEEEEecCCcccchhhHHHHHHHHHhh
Q 001161 24 VFLSFRGEDTRENFTSHLYSALSRESIETFIDDDLRRGDEISQSLLDAIEASSISIIVFSERYASSRWCLDELLKILECK 103 (1134)
Q Consensus 24 vFis~~~~D~r~~~~~~l~~~l~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~~El~~~~~~~ 103 (1134)
|||||+++| +.|+.+|++.|++.|+++|+|.++.+|+.+.+.|.++|++|+..|+++|++|..|+||..|+..+.+
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~-- 76 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK-- 76 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence 899999999 8899999999999999999999999999999999999999999999999999999999999998833
Q ss_pred hccCcEEEeEEee
Q 001161 104 KEYAQIVIPACYR 116 (1134)
Q Consensus 104 ~~~~~~v~pvf~~ 116 (1134)
.++.|+||..+
T Consensus 77 --~~~~iipv~~~ 87 (102)
T PF13676_consen 77 --RGKPIIPVRLD 87 (102)
T ss_dssp --TSESEEEEECS
T ss_pred --CCCEEEEEEEC
Confidence 44579999843
No 29
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.42 E-value=9.9e-12 Score=162.34 Aligned_cols=298 Identities=13% Similarity=0.098 Sum_probs=186.4
Q ss_pred CCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHH
Q 001161 187 FQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQ 266 (1134)
Q Consensus 187 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 266 (1134)
+|.....+|-|..-++.+.. ....+++.|.|++|.||||++..+.++ ++.++|+.-- . ...+...+..
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~l~-~--~d~~~~~f~~ 76 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYSLD-E--SDNQPERFAS 76 (903)
T ss_pred CCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEecC-c--ccCCHHHHHH
Confidence 45667788888876666643 246789999999999999999988853 3357787321 1 2234444445
Q ss_pred HHHHHHhcCCCCC-------------CCccccHHHHHHhhc--CCcceEEEecCCChH---HHHHHhcCcCCCCCCcEEE
Q 001161 267 QLLSTLLNDGNVK-------------NFPNIDLNFQSKKLT--RKKVLIVFDDVNHPR---QIKILVGRLDLLASGSRII 328 (1134)
Q Consensus 267 ~ll~~l~~~~~~~-------------~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~---~l~~l~~~~~~~~~gsrIi 328 (1134)
.++..+....... .........+...+. +.+++|||||+...+ ..+.+...+....++.++|
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv 156 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLV 156 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEE
Confidence 5555553111110 111111222333332 678999999996542 1222222223345678899
Q ss_pred EEeCChhhhh--hc-CCCeEEEec----CCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHhcC
Q 001161 329 ITTRDRQVLA--NC-GVDEVYQMK----ELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLGRYLYG 401 (1134)
Q Consensus 329 iTTR~~~~~~--~~-~~~~~~~l~----~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~ 401 (1134)
||||...-+. .. ......++. +|+.+|+.++|...... . -..+.+.++.+.++|+|+++..++..+..
T Consensus 157 ~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~--~---~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 157 VLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS--P---IEAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred EEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC--C---CCHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 9999852221 11 112345666 99999999999875421 1 12456789999999999999999887754
Q ss_pred CCHHHHHHHHHHHHcCCCCchhhhhh-hhhcCCCHHHHHHHHhhhcccCCCCHHHHHHHhhhCCCchhcchHHhhccCCe
Q 001161 402 KRREVWENAISKWETAPPKGIQDALK-ISYDGLDDKEQNVFLDIACFFIDDDRDTVTKFLDDCEFFATSGIEVLVDKHLI 480 (1134)
Q Consensus 402 ~~~~~w~~~l~~l~~~~~~~i~~~l~-~sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~~~~~~~~i~~L~~~sLi 480 (1134)
.... .......+...+...+.+.+. ..++.||++.++++...|++. .++.+.+..+.+. ......++.|.+.+++
T Consensus 232 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~--~~~~~~L~~l~~~~l~ 307 (903)
T PRK04841 232 NNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGE--ENGQMRLEELERQGLF 307 (903)
T ss_pred CCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCC--CcHHHHHHHHHHCCCe
Confidence 3210 011112222222344555543 348999999999999999986 5666655555542 2346778999999996
Q ss_pred eE-ec--CCeEEEChhHHHHHHHHhhcc
Q 001161 481 TI-SV--RNKIKMHDLLRAMGREIVRQE 505 (1134)
Q Consensus 481 ~~-~~--~~~~~mHdlv~~~~~~i~~~e 505 (1134)
.. .+ ...|++|++++++.+.....+
T Consensus 308 ~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 308 IQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred eEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 53 22 237999999999999877443
No 30
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.21 E-value=1.2e-09 Score=127.92 Aligned_cols=282 Identities=17% Similarity=0.124 Sum_probs=166.5
Q ss_pred ccCCccccchhHHHHHHhhccC--CCCeeEEEEEecCCChHHHHHHHHHHHHhccCC--ceeeeeechhHhhcCCHHHHH
Q 001161 190 ENEDLVGVRLPMKEIESLLRTG--STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFA--GSFFARNVREAEETGRLGDLR 265 (1134)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~ 265 (1134)
.++.++||+.++++|...+... +.....+.|+|++|+|||++++.+++.+..... ..+++.. ....+...+.
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~----~~~~~~~~~~ 103 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINC----QIDRTRYAIF 103 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEEC----CcCCCHHHHH
Confidence 5678999999999999988542 233456889999999999999999998766542 2333322 1223455677
Q ss_pred HHHHHHHhcCCCCC--CCccccHHHHHHhhc--CCcceEEEecCCChH------HHHHHhcCcCCCCCCcE--EEEEeCC
Q 001161 266 QQLLSTLLNDGNVK--NFPNIDLNFQSKKLT--RKKVLIVFDDVNHPR------QIKILVGRLDLLASGSR--IIITTRD 333 (1134)
Q Consensus 266 ~~ll~~l~~~~~~~--~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~------~l~~l~~~~~~~~~gsr--IiiTTR~ 333 (1134)
.+++.++....... .+..+....+.+.+. +++.+||||+++... .+..+...... .++++ +|.++.+
T Consensus 104 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~ 182 (394)
T PRK00411 104 SEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSD 182 (394)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECC
Confidence 77777776522211 233444555566654 356899999997653 34454433222 12333 5666665
Q ss_pred hhhhhhc-------CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHH----hcCChHHHHHHHHHh---
Q 001161 334 RQVLANC-------GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKY----ARGVPLALEVLGRYL--- 399 (1134)
Q Consensus 334 ~~~~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~----~~GlPLal~~~g~~L--- 399 (1134)
..+.... -....+.+++++.++..+++..++-..-.+..-..+.++.+++. .|..+.|+.++-...
T Consensus 183 ~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a 262 (394)
T PRK00411 183 LTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIA 262 (394)
T ss_pred cchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 5432221 11246789999999999999887632211111112333344443 455677776654321
Q ss_pred --cCC---CHHHHHHHHHHHHcCCCCchhhhhhhhhcCCCHHHHHHHHhhhcccC----CCCHHHHHH----HhhhCCCc
Q 001161 400 --YGK---RREVWENAISKWETAPPKGIQDALKISYDGLDDKEQNVFLDIACFFI----DDDRDTVTK----FLDDCEFF 466 (1134)
Q Consensus 400 --~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~----~~~~~~l~~----~~~~~~~~ 466 (1134)
.+. +.+..+.+++... .....-.+..||.++|.++..++.... ......+.. +....+..
T Consensus 263 ~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~ 335 (394)
T PRK00411 263 EREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE 335 (394)
T ss_pred HHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC
Confidence 111 4566666666552 223455688999999999887775532 122222221 11122322
Q ss_pred ------hhcchHHhhccCCeeEe
Q 001161 467 ------ATSGIEVLVDKHLITIS 483 (1134)
Q Consensus 467 ------~~~~i~~L~~~sLi~~~ 483 (1134)
....+..|.+.|+|...
T Consensus 336 ~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 336 PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCcHHHHHHHHHHHHhcCCeEEE
Confidence 23457889999999865
No 31
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.14 E-value=9.5e-10 Score=123.95 Aligned_cols=267 Identities=18% Similarity=0.210 Sum_probs=151.2
Q ss_pred CCccccchhHHHHHHhhccC---CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHH
Q 001161 192 EDLVGVRLPMKEIESLLRTG---STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQL 268 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 268 (1134)
.+|||++..+++|..++... ....+.+.++|++|+|||+||+++++.+...+. +. .. ........+.. .
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~-~~---~~~~~~~~l~~-~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---IT-SG---PALEKPGDLAA-I 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---Ee-cc---chhcCchhHHH-H
Confidence 46999999999999888632 233456889999999999999999987754321 11 00 00011111111 1
Q ss_pred HHHHhcCCCC-----CCCccccHHHHHHhhcCCcceEEEecCCChHHHHHHhcCcCCCCCCcEEEEEeCChhhhhhc--C
Q 001161 269 LSTLLNDGNV-----KNFPNIDLNFQSKKLTRKKVLIVFDDVNHPRQIKILVGRLDLLASGSRIIITTRDRQVLANC--G 341 (1134)
Q Consensus 269 l~~l~~~~~~-----~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~--~ 341 (1134)
+..+....-. ..-.....+.+...+.+.+..+|+|+.....++.. ...+..-|..||+...+.... .
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRL------DLPPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceee------cCCCeEEEEecCCccccCHHHHhh
Confidence 1111100000 00000011222223333333344443333222211 112345556677765443221 1
Q ss_pred CCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHhc------CC---CHHHHHHHHH
Q 001161 342 VDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLGRYLY------GK---RREVWENAIS 412 (1134)
Q Consensus 342 ~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~------~~---~~~~w~~~l~ 412 (1134)
....+++++++.+|..+++.+.+.... ..-..+.+..|++.|+|.|-.+..++..+. +. +.+..+..
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~--~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~-- 225 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLN--VEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKA-- 225 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHH--
Confidence 234679999999999999998874322 223356778999999999977655554321 00 11111111
Q ss_pred HHHcCCCCchhhhhhhhhcCCCHHHHHHHH-hhhcccCC-CCHHHHHHHhhhCCCchhcchH-HhhccCCeeEecCC
Q 001161 413 KWETAPPKGIQDALKISYDGLDDKEQNVFL-DIACFFID-DDRDTVTKFLDDCEFFATSGIE-VLVDKHLITISVRN 486 (1134)
Q Consensus 413 ~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~l~~~~~~~~~~~~~~i~-~L~~~sLi~~~~~~ 486 (1134)
...+...|.+|++.++..+. .++.+..+ ...+.+...++.....++..++ .|++++||.....+
T Consensus 226 ----------l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g 292 (305)
T TIGR00635 226 ----------LEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRG 292 (305)
T ss_pred ----------HHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCch
Confidence 22256678899999888777 44555433 4677788888777777777788 69999999755444
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=3.9e-12 Score=141.76 Aligned_cols=171 Identities=30% Similarity=0.462 Sum_probs=121.0
Q ss_pred CCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEcc
Q 001161 703 GNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAV 782 (1134)
Q Consensus 703 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~ 782 (1134)
..|+.|.|..|.|..+|..+.++..|++|+|+.|+ +..+|..++.|+ |+.|-+++|+ ++.+|+.++.+..|..|+.+
T Consensus 98 ~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s 174 (722)
T KOG0532|consen 98 VSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVS 174 (722)
T ss_pred HHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhh
Confidence 45666667777777788888888888888888877 456677677766 7777777755 45677777777788888888
Q ss_pred CCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccccccccCcceeecCCCCcccccc
Q 001161 783 GTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPE 862 (1134)
Q Consensus 783 ~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~ 862 (1134)
.|.+..+|+.++++.+|+.|.+..|.....+. .+. .-.|..||+|.|+++.||-.|..|+.|++|-|.+|.+++=|.
T Consensus 175 ~nei~slpsql~~l~slr~l~vrRn~l~~lp~--El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 175 KNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPE--ELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred hhhhhhchHHhhhHHHHHHHHHhhhhhhhCCH--HHh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChH
Confidence 88888888888888888888877776333222 222 234777777777777777777777777777777777777666
Q ss_pred chhC---CCCCcEEEecccc
Q 001161 863 SIIQ---LSNLEWLFIRYCE 879 (1134)
Q Consensus 863 ~l~~---l~~L~~L~Ls~n~ 879 (1134)
.+.- ..-.++|+..-|+
T Consensus 252 qIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 252 QICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred HHHhccceeeeeeecchhcc
Confidence 5432 3345667776664
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.12 E-value=7.7e-11 Score=138.22 Aligned_cols=196 Identities=31% Similarity=0.438 Sum_probs=146.5
Q ss_pred EEEecCCCCCCCcccccC-CCcceeEecCcCccccCccccCCC-CCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCC
Q 001161 685 ELNLSGCSKLKRLPEISS-GNIETMHLDGTALEELPSSIECLS-KLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSN 762 (1134)
Q Consensus 685 ~L~Ls~~~~l~~~~~~~~-~~L~~L~L~~n~i~~lp~~~~~l~-~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~ 762 (1134)
.|.+..+........+.. ..+..|++.+|.+.++|.....+. +|+.|++++|.+ ..+|..+..+++|+.|++++|++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccch-hhhhhhhhccccccccccCCchh
Confidence 455555544333333333 567777788888888888777774 888888888874 44545577888888888888775
Q ss_pred CCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccccc
Q 001161 763 LQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESLG 842 (1134)
Q Consensus 763 ~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~ 842 (1134)
. .+|...+.+++|+.|++++|.+..+|..+..+..|+.|.+++|.... ....+..+.++..|.+.+|.+..++..++
T Consensus 176 ~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~--~~~~~~~~~~l~~l~l~~n~~~~~~~~~~ 252 (394)
T COG4886 176 S-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE--LLSSLSNLKNLSGLELSNNKLEDLPESIG 252 (394)
T ss_pred h-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCccee--cchhhhhcccccccccCCceeeeccchhc
Confidence 4 44554557788888999999998888877777778888888885222 23346677788888888888888788888
Q ss_pred cccCcceeecCCCCccccccchhCCCCCcEEEeccccCCCccC
Q 001161 843 LLSLVTELHLEGNNFERIPESIIQLSNLEWLFIRYCERLQSLP 885 (1134)
Q Consensus 843 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp 885 (1134)
.+++|+.|++++|.++.++. +..+.+|+.|++++|.+...+|
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 88889999999999998886 8888899999999888776655
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=3.1e-12 Score=142.53 Aligned_cols=202 Identities=23% Similarity=0.357 Sum_probs=166.1
Q ss_pred CCCCCcccccC----CCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCC
Q 001161 692 SKLKRLPEISS----GNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLP 767 (1134)
Q Consensus 692 ~~l~~~~~~~~----~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p 767 (1134)
..++.+|.... ......+|+.|.+.++|..+..+..|+.|.|..|. ...+|..++++..|+.|+|+.|++ ..+|
T Consensus 60 rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nql-S~lp 137 (722)
T KOG0532|consen 60 RRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQL-SHLP 137 (722)
T ss_pred chhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchh-hcCC
Confidence 34455543322 34556788999999999999999999999999887 567888899999999999999875 4567
Q ss_pred ccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccccccccCc
Q 001161 768 EELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESLGLLSLV 847 (1134)
Q Consensus 768 ~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 847 (1134)
..+..|+ |+.|-+++|+++.+|..++.+..|..|+.+.|...+ .+..++++.+|+.|++..|++..+|+.+..| .|
T Consensus 138 ~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~s--lpsql~~l~slr~l~vrRn~l~~lp~El~~L-pL 213 (722)
T KOG0532|consen 138 DGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQS--LPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PL 213 (722)
T ss_pred hhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhh--chHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ce
Confidence 7676665 999999999999999999999999999999998333 3456789999999999999999999999855 58
Q ss_pred ceeecCCCCccccccchhCCCCCcEEEeccccCCCccC-C-----cCCCcCeEeccCCc
Q 001161 848 TELHLEGNNFERIPESIIQLSNLEWLFIRYCERLQSLP-K-----LPCNLIWLDAHHCT 900 (1134)
Q Consensus 848 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp-~-----~~~~L~~L~l~~c~ 900 (1134)
..||+|.|++..||..|.+|..|++|-|.+|++.. -| + ...=.++|+..-|.
T Consensus 214 i~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 214 IRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeeecccCceeecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence 99999999999999999999999999999998643 33 1 11235777777774
No 35
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.11 E-value=2.6e-10 Score=123.38 Aligned_cols=196 Identities=19% Similarity=0.227 Sum_probs=101.9
Q ss_pred ccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHH------HHH
Q 001161 194 LVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDL------RQQ 267 (1134)
Q Consensus 194 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l------~~~ 267 (1134)
|+||+.++++|.+++..+ ..+.+.|+|+.|+|||+|++++.+.....-...+|+......... ..... ...
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNES-SLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHH-HHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhh-HHHHHHHHHHHHHH
Confidence 799999999999999753 357799999999999999999999874433345555332111110 01111 111
Q ss_pred HHHHHhc---CCC-------CCCCccccHHHHHHhhc--CCcceEEEecCCChH-------H----HHHHhcCcCCCCCC
Q 001161 268 LLSTLLN---DGN-------VKNFPNIDLNFQSKKLT--RKKVLIVFDDVNHPR-------Q----IKILVGRLDLLASG 324 (1134)
Q Consensus 268 ll~~l~~---~~~-------~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~-------~----l~~l~~~~~~~~~g 324 (1134)
+...+.. ... ...........+.+.+. +++++||+||++... . +..+...... ...
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQN 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TT
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCC
Confidence 1111111 100 01122233344444443 345999999986555 1 2222222111 233
Q ss_pred cEEEEEeCChhhhhh--------cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHH
Q 001161 325 SRIIITTRDRQVLAN--------CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEV 394 (1134)
Q Consensus 325 srIiiTTR~~~~~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 394 (1134)
..+|+++....+... .+....+.+++|+.+++++++...+-.. ..-+...+..++|+..+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 344555544444332 2333458999999999999999865332 11112356678999999999988764
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.11 E-value=2.5e-11 Score=124.77 Aligned_cols=205 Identities=20% Similarity=0.199 Sum_probs=143.9
Q ss_pred cCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCC
Q 001161 742 LPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGL 821 (1134)
Q Consensus 742 lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 821 (1134)
+|..+.-+++|+++.++.|.- ..+......-+.|+++...++.+...|. +...+.+..+..+.-....+.........
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~-~~i~~~~~~kptl~t~~v~~s~~~~~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALST-ENIVDIELLKPTLQTICVHNTTIQDVPS-LLPETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred cccchHHhhhhheeeeeccch-hheeceeecCchhheeeeeccccccccc-ccchhhhcCccCCCCCccCCceEEecchH
Confidence 444455677888888888762 2333333344678888887777665442 12222222222222112233333445567
Q ss_pred CCCCEEeccCCCCCCCccccccccCcceeecCCCCccccccchhCCCCCcEEEeccccCCCccC--CcCCCcCeEeccCC
Q 001161 822 QNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPESIIQLSNLEWLFIRYCERLQSLP--KLPCNLIWLDAHHC 899 (1134)
Q Consensus 822 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp--~~~~~L~~L~l~~c 899 (1134)
..|++||||+|.|+.+.++..-+|.++.|++|.|.|..+.. +..+++|+.||||+|.+..... .-+.+++.|.+++|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 78999999999999999999999999999999999998864 8899999999999998654333 35678999999985
Q ss_pred cccccccCCCCCCCCccceeeeccCCCCCCccccccchH-HHHHHhHHHHHHhHHhhhhcC
Q 001161 900 TALESLPGLFPSSNESYLRTLYLSDNFKLDPNDLGGIVK-GALQKIQLLATARLKEAREKI 959 (1134)
Q Consensus 900 ~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~~~~-~~~~~l~~L~~L~L~~n~~~~ 959 (1134)
.+++++|. ..+-+|..||+++| ++..... ..+++++.|+.+.|.+|.+.+
T Consensus 363 -~iE~LSGL---~KLYSLvnLDl~~N------~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 363 -KIETLSGL---RKLYSLVNLDLSSN------QIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred -hHhhhhhh---Hhhhhheecccccc------chhhHHHhcccccccHHHHHhhcCCCccc
Confidence 55777755 46778888998888 5544322 356788999999999998765
No 37
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.07 E-value=8.5e-10 Score=125.08 Aligned_cols=261 Identities=18% Similarity=0.183 Sum_probs=153.9
Q ss_pred CCccCCccccchhHHHHHHhhcc---CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRT---GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDL 264 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 264 (1134)
|...++|+|++..++.+..++.. .....+.+.|+|++|+|||++|+.+++.+...+. +. ..... .....
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~-~~~~~---~~~~~- 92 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---IT-SGPAL---EKPGD- 92 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EE-ecccc---cChHH-
Confidence 45677899999999999888753 2334567899999999999999999998754331 11 00000 00011
Q ss_pred HHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH--HHHHHhcCcC-------------------CCCC
Q 001161 265 RQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR--QIKILVGRLD-------------------LLAS 323 (1134)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~l~~l~~~~~-------------------~~~~ 323 (1134)
...++.. + .+.-+|++|+++... ..+.+...+. ...+
T Consensus 93 l~~~l~~---------------------l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 93 LAAILTN---------------------L-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred HHHHHHh---------------------c-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 1111111 1 123466667665321 1111111100 0122
Q ss_pred CcEEEEEeCChhhhhhc--CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHhcC
Q 001161 324 GSRIIITTRDRQVLANC--GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLGRYLYG 401 (1134)
Q Consensus 324 gsrIiiTTR~~~~~~~~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~ 401 (1134)
.+-|..|+|...+.... .....+++++++.++..+++.+.+.... ..-..+.+..|++.|+|.|-.+..+...+.
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~- 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG--VEIDEEGALEIARRSRGTPRIANRLLRRVR- 227 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHcCCCchHHHHHHHHHH-
Confidence 34455666655443221 1134689999999999999998874432 223356788999999999965555544321
Q ss_pred CCHHHHHHHHHHHHcCCC---CchhhhhhhhhcCCCHHHHHHHH-hhhcccCC-CCHHHHHHHhhhCCCchhcchH-Hhh
Q 001161 402 KRREVWENAISKWETAPP---KGIQDALKISYDGLDDKEQNVFL-DIACFFID-DDRDTVTKFLDDCEFFATSGIE-VLV 475 (1134)
Q Consensus 402 ~~~~~w~~~l~~l~~~~~---~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~l~~~~~~~~~~~~~~i~-~L~ 475 (1134)
.|.... .-..... ....+.+...+..|++..+..+. .+..|..+ ...+.+...+......++..++ .|+
T Consensus 228 ----~~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li 302 (328)
T PRK00080 228 ----DFAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLI 302 (328)
T ss_pred ----HHHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHH
Confidence 111100 0000000 12233456778899999988886 55555443 4677888888776666777777 899
Q ss_pred ccCCeeEecCC
Q 001161 476 DKHLITISVRN 486 (1134)
Q Consensus 476 ~~sLi~~~~~~ 486 (1134)
+.+||+....+
T Consensus 303 ~~~li~~~~~g 313 (328)
T PRK00080 303 QQGFIQRTPRG 313 (328)
T ss_pred HcCCcccCCch
Confidence 99999755433
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.04 E-value=2.5e-10 Score=133.93 Aligned_cols=202 Identities=29% Similarity=0.389 Sum_probs=160.9
Q ss_pred EEEccCCCCCcccCCccCcCcccEEEecCCCCCCCcccccCC--CcceeEecCcCccccCccccCCCCCCeeeccCCcCC
Q 001161 662 ILNLSGCGNLQSLPDRIHLELLKELNLSGCSKLKRLPEISSG--NIETMHLDGTALEELPSSIECLSKLSRLDLADCKSL 739 (1134)
Q Consensus 662 ~L~L~~~~~~~~lp~~~~l~~L~~L~Ls~~~~l~~~~~~~~~--~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~ 739 (1134)
.|++..+...........++.++.|++.++.....-+..... +|+.|++++|.+..+|..++.+++|+.|++++|++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l- 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL- 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchh-
Confidence 577777665555555556678888888887655444444443 89999999999999988899999999999999984
Q ss_pred cccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccC
Q 001161 740 KSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVD 819 (1134)
Q Consensus 740 ~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 819 (1134)
..+|...+.+++|+.|++++|.+ ..+|...+.+..|++|.+++|.+...+..+.+++++..|.+.+|+.... +..+.
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~--~~~~~ 252 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL--PESIG 252 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCcc-ccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec--cchhc
Confidence 55666555899999999999875 4566666667779999999998888888899999999999988873221 34577
Q ss_pred CCCCCCEEeccCCCCCCCccccccccCcceeecCCCCccccccchhCCC
Q 001161 820 GLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPESIIQLS 868 (1134)
Q Consensus 820 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~ 868 (1134)
.+++|+.|++++|.++.++. ++.+.+|+.|++++|.+..++.......
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~~~ 300 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIALLL 300 (394)
T ss_pred cccccceecccccccccccc-ccccCccCEEeccCccccccchhhhccc
Confidence 88899999999999999987 8999999999999999987765444433
No 39
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.02 E-value=2.8e-08 Score=115.27 Aligned_cols=248 Identities=16% Similarity=0.128 Sum_probs=143.3
Q ss_pred CccCCccccchhHHHHHHhhcc--CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCC------ceeeeeechhHhhcCC
Q 001161 189 SENEDLVGVRLPMKEIESLLRT--GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFA------GSFFARNVREAEETGR 260 (1134)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~------~~~~~~~~~~~~~~~~ 260 (1134)
..++.++||+.++++|...+.. .+.....+.|+|++|+|||++++++++.+..... ..+|+... ...+
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~----~~~~ 87 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ----ILDT 87 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC----CCCC
Confidence 3556899999999999998864 1233456899999999999999999987654322 23344321 2234
Q ss_pred HHHHHHHHHHHHhc--CCCCC--CCccccHHHHHHhhc--CCcceEEEecCCChH-----HHHHHhcCcCC-C--CCCcE
Q 001161 261 LGDLRQQLLSTLLN--DGNVK--NFPNIDLNFQSKKLT--RKKVLIVFDDVNHPR-----QIKILVGRLDL-L--ASGSR 326 (1134)
Q Consensus 261 ~~~l~~~ll~~l~~--~~~~~--~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~-----~l~~l~~~~~~-~--~~gsr 326 (1134)
...+..+++.++.. ..... .+..+....+.+.+. +++++||||+++... .+..+...... . +....
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~ 167 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVG 167 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEE
Confidence 45677777777642 11111 122233344445553 567899999998761 13333322111 1 12334
Q ss_pred EEEEeCChhhhhhc-------CCCeEEEecCCCHHhHHHHHHHhhc---CCCCCCccHHHHHHHHHHHhcCChHHH-HHH
Q 001161 327 IIITTRDRQVLANC-------GVDEVYQMKELVHDDALRLFSRHAF---EGDHPHESHTELACKIIKYARGVPLAL-EVL 395 (1134)
Q Consensus 327 IiiTTR~~~~~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~af---~~~~~~~~~~~~~~~i~~~~~GlPLal-~~~ 395 (1134)
+|.+|......... -....+.+++++.+|..+++..++- ......++..+.+.+++....|.|-.+ ..+
T Consensus 168 lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l 247 (365)
T TIGR02928 168 VIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLL 247 (365)
T ss_pred EEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 55555544322111 0124678999999999999988763 111122333345556677777887443 322
Q ss_pred HHHh--c---C---CCHHHHHHHHHHHHcCCCCchhhhhhhhhcCCCHHHHHHHHhhhcc
Q 001161 396 GRYL--Y---G---KRREVWENAISKWETAPPKGIQDALKISYDGLDDKEQNVFLDIACF 447 (1134)
Q Consensus 396 g~~L--~---~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f 447 (1134)
-... . + -+.+..+.+.+.+. .....-+...||.+++.++..++..
T Consensus 248 ~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~ 300 (365)
T TIGR02928 248 RVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANL 300 (365)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2111 1 1 14455555555442 2233456679999988887776643
No 40
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.02 E-value=7.1e-09 Score=122.39 Aligned_cols=296 Identities=14% Similarity=0.130 Sum_probs=186.2
Q ss_pred CCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHH
Q 001161 187 FQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQ 266 (1134)
Q Consensus 187 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 266 (1134)
+|..+...|-|.+-++.+.. ..+.|.+.|..++|.|||||+.++.. ....-..+.|+.-- ....+......
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlsld---e~dndp~rF~~ 84 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLD---ESDNDPARFLS 84 (894)
T ss_pred CCCCcccccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecC---CccCCHHHHHH
Confidence 34556777878766665543 34689999999999999999999987 44455677887432 23445666677
Q ss_pred HHHHHHhcCCCCC-------------CCccccHHHHHHhhc--CCcceEEEecCCCh---H---HHHHHhcCcCCCCCCc
Q 001161 267 QLLSTLLNDGNVK-------------NFPNIDLNFQSKKLT--RKKVLIVFDDVNHP---R---QIKILVGRLDLLASGS 325 (1134)
Q Consensus 267 ~ll~~l~~~~~~~-------------~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~---~---~l~~l~~~~~~~~~gs 325 (1134)
.++..+....... .+.......+...+. .++..+||||..-. . .++.+... ..++-
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~~l 161 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APENL 161 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCCCe
Confidence 7777665332221 122223334444343 46899999997432 2 25555544 46788
Q ss_pred EEEEEeCChhhhhhc---CCCeEEEe----cCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHHHH
Q 001161 326 RIIITTRDRQVLANC---GVDEVYQM----KELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLGRY 398 (1134)
Q Consensus 326 rIiiTTR~~~~~~~~---~~~~~~~l----~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~ 398 (1134)
..|+|||..--+... -.+...++ =.++.+|+.++|..+.. .+-....++.+.+...|.+-|+..++=.
T Consensus 162 ~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-----l~Ld~~~~~~L~~~teGW~~al~L~aLa 236 (894)
T COG2909 162 TLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-----LPLDAADLKALYDRTEGWAAALQLIALA 236 (894)
T ss_pred EEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-----CCCChHHHHHHHhhcccHHHHHHHHHHH
Confidence 999999987432211 01223333 35889999999988651 1222456889999999999999999988
Q ss_pred hcCC-CHHHHHHHHHHHHcCCCCchhh-hhhhhhcCCCHHHHHHHHhhhcccCCCCHHHHHHHhhhCCCchhcchHHhhc
Q 001161 399 LYGK-RREVWENAISKWETAPPKGIQD-ALKISYDGLDDKEQNVFLDIACFFIDDDRDTVTKFLDDCEFFATSGIEVLVD 476 (1134)
Q Consensus 399 L~~~-~~~~w~~~l~~l~~~~~~~i~~-~l~~sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~~~~~~~~i~~L~~ 476 (1134)
+++. +.+.-...+. .. ...|.+ ...--+|.||++.|..++-+|++.. +.-+-...+.+. ......++.|..
T Consensus 237 ~~~~~~~~q~~~~Ls---G~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~eL~~~Ltg~--~ng~amLe~L~~ 309 (894)
T COG2909 237 LRNNTSAEQSLRGLS---GA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FNDELCNALTGE--ENGQAMLEELER 309 (894)
T ss_pred ccCCCcHHHHhhhcc---ch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHHHHHHHhcC--CcHHHHHHHHHh
Confidence 8733 3222111111 11 111111 2233468999999999999988733 222222222221 123345889999
Q ss_pred cCCeeE--ec-CCeEEEChhHHHHHHHHhhccC
Q 001161 477 KHLITI--SV-RNKIKMHDLLRAMGREIVRQES 506 (1134)
Q Consensus 477 ~sLi~~--~~-~~~~~mHdlv~~~~~~i~~~e~ 506 (1134)
++|+-+ ++ .+.|+.|.++.+|-+...+.+.
T Consensus 310 ~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 310 RGLFLQRLDDEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred CCCceeeecCCCceeehhHHHHHHHHhhhcccc
Confidence 998764 22 6789999999999998876644
No 41
>PF05729 NACHT: NACHT domain
Probab=98.98 E-value=3.8e-09 Score=107.44 Aligned_cols=143 Identities=19% Similarity=0.267 Sum_probs=86.3
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccCC-----ceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHFA-----GSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQS 290 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~ 290 (1134)
|++.|+|.+|+||||+++.++.++..... ...++...+..........+...+......... ... ..+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~---~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---PIE---ELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---hhH---HHHH
Confidence 57999999999999999999987765542 223333333333332222343333333221111 111 1122
Q ss_pred H-hhcCCcceEEEecCCChHH---------HHHHhc-CcCC-CCCCcEEEEEeCChhh--h-hhcCCCeEEEecCCCHHh
Q 001161 291 K-KLTRKKVLIVFDDVNHPRQ---------IKILVG-RLDL-LASGSRIIITTRDRQV--L-ANCGVDEVYQMKELVHDD 355 (1134)
Q Consensus 291 ~-~L~~k~~LlVLDdv~~~~~---------l~~l~~-~~~~-~~~gsrIiiTTR~~~~--~-~~~~~~~~~~l~~L~~~e 355 (1134)
. ....++++||||++++... +..+.. .+.. ..++.+++||+|.... . ........+++++|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 2 2256899999999865433 112221 1111 3578999999998866 2 223344689999999999
Q ss_pred HHHHHHHhh
Q 001161 356 ALRLFSRHA 364 (1134)
Q Consensus 356 a~~Lf~~~a 364 (1134)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999987754
No 42
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.97 E-value=7.5e-09 Score=129.88 Aligned_cols=328 Identities=17% Similarity=0.240 Sum_probs=191.6
Q ss_pred CccccchhHHHHHHhhccCC-CCeeEEEEEecCCChHHHHHHHHHHHHhccCC---------------ceeeeeechhHh
Q 001161 193 DLVGVRLPMKEIESLLRTGS-TNVYKLGIWGIGGIGKTTIAGAIFSKISRHFA---------------GSFFARNVREAE 256 (1134)
Q Consensus 193 ~~vGr~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---------------~~~~~~~~~~~~ 256 (1134)
.++||+.+++.|...+.... ....++.+.|..|||||+|+++|...+.+++. ...|+..+++..
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 37999999999998887643 45679999999999999999999987655411 111222222211
Q ss_pred hc---C---CHHHHHHHHHHHHhcCCCC-----------------C-C-Cc---ccc-----HHHHHHhh-cCCcceEEE
Q 001161 257 ET---G---RLGDLRQQLLSTLLNDGNV-----------------K-N-FP---NID-----LNFQSKKL-TRKKVLIVF 302 (1134)
Q Consensus 257 ~~---~---~~~~l~~~ll~~l~~~~~~-----------------~-~-~~---~~~-----~~~l~~~L-~~k~~LlVL 302 (1134)
.. . ....-..+++..+...... . . .. ... ...+.... +.++.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 10 0 0111111222222111100 0 0 00 000 11222222 346999999
Q ss_pred ecCCChH-H----HHHHhcCcC--CC-CCCcEEEEEeCCh--hhhhhcCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCc
Q 001161 303 DDVNHPR-Q----IKILVGRLD--LL-ASGSRIIITTRDR--QVLANCGVDEVYQMKELVHDDALRLFSRHAFEGDHPHE 372 (1134)
Q Consensus 303 Ddv~~~~-~----l~~l~~~~~--~~-~~gsrIiiTTR~~--~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~ 372 (1134)
||+...+ . ++.+..... .+ ....-.+.|.+.. .+.........+.+.+|+..+...+........ ..
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~---~~ 237 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT---KL 237 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc---cc
Confidence 9994333 2 344433322 00 0111222333332 112222334688999999999999998876332 23
Q ss_pred cHHHHHHHHHHHhcCChHHHHHHHHHhcCC-------CHHHHHHHHHHHHcCC-CCchhhhhhhhhcCCCHHHHHHHHhh
Q 001161 373 SHTELACKIIKYARGVPLALEVLGRYLYGK-------RREVWENAISKWETAP-PKGIQDALKISYDGLDDKEQNVFLDI 444 (1134)
Q Consensus 373 ~~~~~~~~i~~~~~GlPLal~~~g~~L~~~-------~~~~w~~~l~~l~~~~-~~~i~~~l~~sy~~L~~~~k~~fl~~ 444 (1134)
...+....|+++..|+|+.+..+-..+... +...|..-...+.... .+.+.+.+....+.||...|+++...
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~A 317 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAA 317 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 336788899999999999999999988753 3345655544443322 12345568889999999999999999
Q ss_pred hcccCCCCHHHHHHHhhhCCCchhcchHHhhccCCeeEec--------CC---eEEEChhHHHHHHHHhhccCCCCCCCc
Q 001161 445 ACFFIDDDRDTVTKFLDDCEFFATSGIEVLVDKHLITISV--------RN---KIKMHDLLRAMGREIVRQESTNDPGKR 513 (1134)
Q Consensus 445 a~f~~~~~~~~l~~~~~~~~~~~~~~i~~L~~~sLi~~~~--------~~---~~~mHdlv~~~~~~i~~~e~~~~~~~~ 513 (1134)
||+.+.++.+.+..++..........+......++|.... .. +-..|+++|+.+-....+.
T Consensus 318 A~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~-------- 389 (849)
T COG3899 318 ACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES-------- 389 (849)
T ss_pred HHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh--------
Confidence 9999999999988887754333333333334445554421 11 2267888888887654432
Q ss_pred ccccchhhHHHHhhcCCC
Q 001161 514 SRLWHHKEVYKILSENRG 531 (1134)
Q Consensus 514 srl~~~~~i~~~l~~~~~ 531 (1134)
.|...|..+...|..+..
T Consensus 390 ~rq~~H~~i~~lL~~~~~ 407 (849)
T COG3899 390 QRQYLHLRIGQLLEQNIP 407 (849)
T ss_pred hHHHHHHHHHHHHHHhCC
Confidence 233444555555555543
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=1.6e-10 Score=118.96 Aligned_cols=104 Identities=20% Similarity=0.219 Sum_probs=52.7
Q ss_pred CCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccccccccCcceeec
Q 001161 773 LEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESLGLLSLVTELHL 852 (1134)
Q Consensus 773 l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 852 (1134)
.+.|++|+|++|.|+++..++.-++.++.|++++|. +.... .+..+++|+.||||+|.++++..+-..+-+.++|.|
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQ--NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeeh--hhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 344555555555555555555555555555555554 22111 244455555555555555554444444555555555
Q ss_pred CCCCccccccchhCCCCCcEEEeccccC
Q 001161 853 EGNNFERIPESIIQLSNLEWLFIRYCER 880 (1134)
Q Consensus 853 s~n~l~~lp~~l~~l~~L~~L~Ls~n~~ 880 (1134)
++|.|.++. ++..+-+|..||+++|++
T Consensus 360 a~N~iE~LS-GL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 360 AQNKIETLS-GLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred hhhhHhhhh-hhHhhhhheeccccccch
Confidence 555555553 455555555555555543
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.5e-10 Score=125.70 Aligned_cols=107 Identities=21% Similarity=0.336 Sum_probs=48.4
Q ss_pred CCCCcEEEccCCcCc--ccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCc--cccccccCcc
Q 001161 773 LEALDSLHAVGTAIR--ELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELP--ESLGLLSLVT 848 (1134)
Q Consensus 773 l~~L~~L~L~~n~i~--~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~ 848 (1134)
+++|+.|.|++|.++ ++-..+..+++|+.|+|..|. .-.........+..|++|+|++|++...+ ...+.++.|+
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~-~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE-IILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc-ccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 344444444444444 222233344555555555443 11222223334445555555555555444 2344555555
Q ss_pred eeecCCCCcccc--ccc-----hhCCCCCcEEEeccccC
Q 001161 849 ELHLEGNNFERI--PES-----IIQLSNLEWLFIRYCER 880 (1134)
Q Consensus 849 ~L~Ls~n~l~~l--p~~-----l~~l~~L~~L~Ls~n~~ 880 (1134)
.|+++.|.++++ |+. ...+++|++|+++.|++
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 555555555522 222 23345555555555554
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.5e-10 Score=125.71 Aligned_cols=161 Identities=21% Similarity=0.248 Sum_probs=99.4
Q ss_pred ccCCCCCCeeeccCCcCCcccCcc-cCCCCCCcEEeecCCCCCCC-CCccccCCCCCcEEEccCCc-CcccCccccCCCC
Q 001161 722 IECLSKLSRLDLADCKSLKSLPSG-LCKLKSLDVLNIDGCSNLQR-LPEELGYLEALDSLHAVGTA-IRELPPSIVRLKS 798 (1134)
Q Consensus 722 ~~~l~~L~~L~L~~n~~~~~lp~~-l~~l~~L~~L~L~~~~~~~~-~p~~~~~l~~L~~L~L~~n~-i~~lp~~~~~l~~ 798 (1134)
...|++|+.|+|+.|++.-..... -..+++|+.|.|++|.+... +-..+..+|+|+.|+|.+|. +..-..+..-+..
T Consensus 168 ~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~ 247 (505)
T KOG3207|consen 168 AEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT 247 (505)
T ss_pred HHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence 445666666666666543222111 12456667777777665532 22334456677777777763 2222223334566
Q ss_pred CCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCC--ccc-----cccccCcceeecCCCCccccc--cchhCCCC
Q 001161 799 VRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITEL--PES-----LGLLSLVTELHLEGNNFERIP--ESIIQLSN 869 (1134)
Q Consensus 799 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l--p~~-----l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~ 869 (1134)
|+.|+|++|+.+........+.++.|..|+++.|.+.++ |+. ...+++|++|+++.|+|..++ ..+..+++
T Consensus 248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~n 327 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLEN 327 (505)
T ss_pred HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccch
Confidence 777777777755555555567788888888888888753 443 355788999999999887665 34566778
Q ss_pred CcEEEeccccCCC
Q 001161 870 LEWLFIRYCERLQ 882 (1134)
Q Consensus 870 L~~L~Ls~n~~l~ 882 (1134)
|+.|.+..|.+..
T Consensus 328 lk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 328 LKHLRITLNYLNK 340 (505)
T ss_pred hhhhhcccccccc
Confidence 8888877776554
No 46
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.89 E-value=7.9e-08 Score=106.38 Aligned_cols=178 Identities=13% Similarity=0.085 Sum_probs=105.8
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHH---
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSK--- 291 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~--- 291 (1134)
..++.|+|++|+||||+++.+++.+...-...+++. .......+++..+...+..... ..........+.+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~lG~~~~-~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAADFGLETE-GRDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHHH
Confidence 457899999999999999999987653211122221 1123445666677666543322 1111112222222
Q ss_pred -h-hcCCcceEEEecCCChH--HHHHHhcCcC---CCCCCcEEEEEeCChhhhhhc----------CCCeEEEecCCCHH
Q 001161 292 -K-LTRKKVLIVFDDVNHPR--QIKILVGRLD---LLASGSRIIITTRDRQVLANC----------GVDEVYQMKELVHD 354 (1134)
Q Consensus 292 -~-L~~k~~LlVLDdv~~~~--~l~~l~~~~~---~~~~gsrIiiTTR~~~~~~~~----------~~~~~~~l~~L~~~ 354 (1134)
. ..+++.+||+||++... .++.+..... .......|++|.... ..... .....+++++++.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 2 25678899999998753 3444432211 112233455665433 11111 12346789999999
Q ss_pred hHHHHHHHhhcCCC--CCCccHHHHHHHHHHHhcCChHHHHHHHHHh
Q 001161 355 DALRLFSRHAFEGD--HPHESHTELACKIIKYARGVPLALEVLGRYL 399 (1134)
Q Consensus 355 ea~~Lf~~~af~~~--~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L 399 (1134)
|..+++...+.... ....-..+..+.|++.++|.|..+..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999887653221 1112335788899999999999999988776
No 47
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.86 E-value=2.2e-09 Score=107.67 Aligned_cols=105 Identities=22% Similarity=0.319 Sum_probs=33.0
Q ss_pred CCCcEEEccCCcCcccCcccc-CCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCcccc-ccccCcceee
Q 001161 774 EALDSLHAVGTAIRELPPSIV-RLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESL-GLLSLVTELH 851 (1134)
Q Consensus 774 ~~L~~L~L~~n~i~~lp~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~ 851 (1134)
.++++|+|.+|.|+.+. .++ .+.+|+.|++++|. +.... .+..++.|++|++++|.|+++.+.+ ..+++|++|+
T Consensus 19 ~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS---S--T--T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccc-chhhhhcCCCEEECCCCC-Ccccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 34555555555555543 233 35556666666665 33221 3455677777777777777775544 3567777777
Q ss_pred cCCCCccccc--cchhCCCCCcEEEeccccCCC
Q 001161 852 LEGNNFERIP--ESIIQLSNLEWLFIRYCERLQ 882 (1134)
Q Consensus 852 Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~~l~ 882 (1134)
|++|+|..+. ..+..+++|+.|+|.+|+...
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 7777776443 345667777777777777653
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.86 E-value=1.2e-09 Score=136.24 Aligned_cols=216 Identities=26% Similarity=0.303 Sum_probs=122.9
Q ss_pred cceeEecCcC--ccccCcc-ccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEc
Q 001161 705 IETMHLDGTA--LEELPSS-IECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHA 781 (1134)
Q Consensus 705 L~~L~L~~n~--i~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L 781 (1134)
|++|-+.+|. +..++.. |..++.|+.|||++|...+.+|..+++|-+|++|+++++.+ ..+|..++++..|.+|++
T Consensus 547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I-~~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI-SHLPSGLGNLKKLIYLNL 625 (889)
T ss_pred cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc-cccchHHHHHHhhheecc
Confidence 4444444443 3344443 55667777777777666667777777777777777776553 366667777777777777
Q ss_pred cCCcCccc-CccccCCCCCCEEEecCCC-CCCCCcccccCCCCCCCEEeccCCCCCCCccccccccCc----ceeecCCC
Q 001161 782 VGTAIREL-PPSIVRLKSVRAIYFGRNR-GLSLPITFSVDGLQNLRDLNLNDCGITELPESLGLLSLV----TELHLEGN 855 (1134)
Q Consensus 782 ~~n~i~~l-p~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L----~~L~Ls~n 855 (1134)
..+.-... |.....+.+|++|.+.... ......-..+.++.+|+.|....... .+-..+..++.| +.+.+.++
T Consensus 626 ~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~ 704 (889)
T KOG4658|consen 626 EVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGC 704 (889)
T ss_pred ccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhccc
Confidence 66654422 3333446777777665332 01111112234455555555544433 111222222222 24444445
Q ss_pred CccccccchhCCCCCcEEEeccccCCCccCCc---------CCCcCeEeccCCcccccccCCCCCCCCccceeeeccCC
Q 001161 856 NFERIPESIIQLSNLEWLFIRYCERLQSLPKL---------PCNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDN 925 (1134)
Q Consensus 856 ~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp~~---------~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n 925 (1134)
.....+..+..+.+|+.|.+.+|......... ++++..+.+.+|..+...... ...++|+.|.+..|
T Consensus 705 ~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~---~f~~~L~~l~l~~~ 780 (889)
T KOG4658|consen 705 SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL---LFAPHLTSLSLVSC 780 (889)
T ss_pred ccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh---hccCcccEEEEecc
Confidence 55566677888889999999988876543322 446666666777665554321 24578899998888
No 49
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.85 E-value=2e-09 Score=107.85 Aligned_cols=126 Identities=27% Similarity=0.295 Sum_probs=37.4
Q ss_pred CCCCCCeeeccCCcCCcccCcccC-CCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEE
Q 001161 724 CLSKLSRLDLADCKSLKSLPSGLC-KLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAI 802 (1134)
Q Consensus 724 ~l~~L~~L~L~~n~~~~~lp~~l~-~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L 802 (1134)
+..++++|+|.+|.+... . .++ .+.+|+.|++++|.+... +.+..+++|++|++++|.|+.+...+.
T Consensus 17 n~~~~~~L~L~~n~I~~I-e-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~-------- 84 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI-E-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLD-------- 84 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHH--------
T ss_pred cccccccccccccccccc-c-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchH--------
Confidence 334555566665554322 1 122 344555555555544321 123344455555555555444433221
Q ss_pred EecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCc--cccccccCcceeecCCCCcccccc----chhCCCCCcEEEec
Q 001161 803 YFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELP--ESLGLLSLVTELHLEGNNFERIPE----SIIQLSNLEWLFIR 876 (1134)
Q Consensus 803 ~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~Ls 876 (1134)
..+++|++|+|++|+|.++. ..+..+++|+.|+|.+|.++.-+. .+..+|+|+.||-.
T Consensus 85 ----------------~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 85 ----------------KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp ----------------HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ----------------HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 23445555555555555332 345667777777777777775542 46678888888754
Q ss_pred c
Q 001161 877 Y 877 (1134)
Q Consensus 877 ~ 877 (1134)
.
T Consensus 149 ~ 149 (175)
T PF14580_consen 149 D 149 (175)
T ss_dssp E
T ss_pred E
Confidence 3
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.79 E-value=5.5e-10 Score=118.46 Aligned_cols=192 Identities=17% Similarity=0.156 Sum_probs=103.6
Q ss_pred cCCCCCCcEEeecCCCCCCCCCcc----ccCCCCCcEEEccCCcCcccC--------------ccccCCCCCCEEEecCC
Q 001161 746 LCKLKSLDVLNIDGCSNLQRLPEE----LGYLEALDSLHAVGTAIRELP--------------PSIVRLKSVRAIYFGRN 807 (1134)
Q Consensus 746 l~~l~~L~~L~L~~~~~~~~~p~~----~~~l~~L~~L~L~~n~i~~lp--------------~~~~~l~~L~~L~l~~n 807 (1134)
+..++.|++|+||+|-+....+.. +.++.+|++|+|.+|.+...- .-+..-+.|+.+...+|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 445667777777777665444332 345677777777777765221 11233456777777777
Q ss_pred CCCCCCc---ccccCCCCCCCEEeccCCCCCC-----CccccccccCcceeecCCCCcc-----ccccchhCCCCCcEEE
Q 001161 808 RGLSLPI---TFSVDGLQNLRDLNLNDCGITE-----LPESLGLLSLVTELHLEGNNFE-----RIPESIIQLSNLEWLF 874 (1134)
Q Consensus 808 ~~~~~~~---~~~~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~ 874 (1134)
+...... ...+...+.|+.+.++.|.|.. +...+..+++|+.|||.+|-|+ .+...+..+++|+.|+
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 6322211 1234455667777777776652 2345566677777777777665 2334455566666666
Q ss_pred eccccCCCccCCcCCCcCeEeccCCcccccccCCCCCCCCccceeeeccCCCCCCccccccchHHHHHHhHHHHHHhHHh
Q 001161 875 IRYCERLQSLPKLPCNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDNFKLDPNDLGGIVKGALQKIQLLATARLKE 954 (1134)
Q Consensus 875 Ls~n~~l~~lp~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~~~~~~~~~l~~L~~L~L~~ 954 (1134)
+++|.+...=. ..+...+. ...|+|+.|.|.+| .++..... .+.......+.|..|+|++
T Consensus 248 l~dcll~~~Ga-----------------~a~~~al~-~~~p~L~vl~l~gN-eIt~da~~-~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 248 LGDCLLENEGA-----------------IAFVDALK-ESAPSLEVLELAGN-EITRDAAL-ALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred ccccccccccH-----------------HHHHHHHh-ccCCCCceeccCcc-hhHHHHHH-HHHHHHhcchhhHHhcCCc
Confidence 66665432100 00000000 13456666776666 22211111 1223445577788888888
Q ss_pred hhh
Q 001161 955 ARE 957 (1134)
Q Consensus 955 n~~ 957 (1134)
|++
T Consensus 308 N~l 310 (382)
T KOG1909|consen 308 NRL 310 (382)
T ss_pred ccc
Confidence 877
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.78 E-value=4.7e-10 Score=118.94 Aligned_cols=225 Identities=20% Similarity=0.265 Sum_probs=115.9
Q ss_pred cCCCCCcEEEccCCCCCcccCCcc-----CcCcccEEEecCCC---CCCCcccc--------cC-CCcceeEecCcCcc-
Q 001161 655 QHLNKLAILNLSGCGNLQSLPDRI-----HLELLKELNLSGCS---KLKRLPEI--------SS-GNIETMHLDGTALE- 716 (1134)
Q Consensus 655 ~~l~~L~~L~L~~~~~~~~lp~~~-----~l~~L~~L~Ls~~~---~l~~~~~~--------~~-~~L~~L~L~~n~i~- 716 (1134)
..+..++.|+|++|.+...-...+ +.++|+..++++-- ....+|.. .. +.|++|+|+.|.+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 345666777777766544322221 34566666666521 00111111 11 35666666666554
Q ss_pred -cc---CccccCCCCCCeeeccCCcCCccc-------------CcccCCCCCCcEEeecCCCCCCC----CCccccCCCC
Q 001161 717 -EL---PSSIECLSKLSRLDLADCKSLKSL-------------PSGLCKLKSLDVLNIDGCSNLQR----LPEELGYLEA 775 (1134)
Q Consensus 717 -~l---p~~~~~l~~L~~L~L~~n~~~~~l-------------p~~l~~l~~L~~L~L~~~~~~~~----~p~~~~~l~~ 775 (1134)
.+ -.-+.++..|++|.|.+|.+...- ...+.+-+.|+++....|.+-.. +...+...+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 11 123556677777777777643210 11123445666666666554321 2234555566
Q ss_pred CcEEEccCCcCc-----ccCccccCCCCCCEEEecCCCCCCCC----cccccCCCCCCCEEeccCCCCCC-----Ccccc
Q 001161 776 LDSLHAVGTAIR-----ELPPSIVRLKSVRAIYFGRNRGLSLP----ITFSVDGLQNLRDLNLNDCGITE-----LPESL 841 (1134)
Q Consensus 776 L~~L~L~~n~i~-----~lp~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~l~~L~~L~Ls~n~l~~-----lp~~l 841 (1134)
|+.+.+..|.|. -+...+..+++|+.|+|..|- ++.. ....+..+++|++|++++|.+.. +-..+
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 666666666665 122345566666666666665 2221 11234556666666666666652 22222
Q ss_pred -ccccCcceeecCCCCcc-----ccccchhCCCCCcEEEeccccC
Q 001161 842 -GLLSLVTELHLEGNNFE-----RIPESIIQLSNLEWLFIRYCER 880 (1134)
Q Consensus 842 -~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~n~~ 880 (1134)
...++|+.|.|.+|.|+ .+-..+...+.|..|+|++|.+
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 23566666666666665 2223444566666666666654
No 52
>PRK06893 DNA replication initiation factor; Validated
Probab=98.75 E-value=1.2e-07 Score=101.41 Aligned_cols=153 Identities=14% Similarity=0.206 Sum_probs=95.1
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhc
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLT 294 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~ 294 (1134)
.+.+.|+|++|+|||+||+++++.+..+...+.|+... .. .....+ +.+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~----~~---~~~~~~---------------------~~~~~~ 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS----KS---QYFSPA---------------------VLENLE 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH----Hh---hhhhHH---------------------HHhhcc
Confidence 46789999999999999999999877666666776321 00 000001 111122
Q ss_pred CCcceEEEecCCCh---HHHH-HHhcCcCCC-CCCcEEEEE-eCC---------hhhhhhcCCCeEEEecCCCHHhHHHH
Q 001161 295 RKKVLIVFDDVNHP---RQIK-ILVGRLDLL-ASGSRIIIT-TRD---------RQVLANCGVDEVYQMKELVHDDALRL 359 (1134)
Q Consensus 295 ~k~~LlVLDdv~~~---~~l~-~l~~~~~~~-~~gsrIiiT-TR~---------~~~~~~~~~~~~~~l~~L~~~ea~~L 359 (1134)
+.-+|||||++.. .+|+ .+...++.. ..|.++||+ ++. +.+...++...++++++++.++.+++
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHH
Confidence 3348999999763 3333 222222211 245566554 443 24444445556899999999999999
Q ss_pred HHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHHHH
Q 001161 360 FSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLGRY 398 (1134)
Q Consensus 360 f~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~ 398 (1134)
+.+.++...- .-..+...-|++++.|..-++..+-..
T Consensus 170 L~~~a~~~~l--~l~~~v~~~L~~~~~~d~r~l~~~l~~ 206 (229)
T PRK06893 170 LQRNAYQRGI--ELSDEVANFLLKRLDRDMHTLFDALDL 206 (229)
T ss_pred HHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 9998864332 223567778888888877665554443
No 53
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.72 E-value=1.5e-07 Score=102.62 Aligned_cols=172 Identities=20% Similarity=0.342 Sum_probs=104.4
Q ss_pred ccCCccccchhH---HHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHH
Q 001161 190 ENEDLVGVRLPM---KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQ 266 (1134)
Q Consensus 190 ~~~~~vGr~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 266 (1134)
..+++||.+.-+ .-|.+++. ++.+.-+.+||++|+||||||+.++......|...-= ...++.++.+
T Consensus 22 ~lde~vGQ~HLlg~~~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA--------v~~gvkdlr~ 91 (436)
T COG2256 22 SLDEVVGQEHLLGEGKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA--------VTSGVKDLRE 91 (436)
T ss_pred CHHHhcChHhhhCCCchHHHHHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecc--------ccccHHHHHH
Confidence 344455554333 22333343 3456778899999999999999999877666642211 1234444433
Q ss_pred HHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCC--ChHHHHHHhcCcCCCCCCcEEEE--EeCChhhh---hh
Q 001161 267 QLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVN--HPRQIKILVGRLDLLASGSRIII--TTRDRQVL---AN 339 (1134)
Q Consensus 267 ~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~--~~~~l~~l~~~~~~~~~gsrIii--TTR~~~~~---~~ 339 (1134)
-+ . +.-+.+..+++.+|++|.|. +..|-+.|++.. ..|.-|+| ||.++... ..
T Consensus 92 i~-e----------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~AL 151 (436)
T COG2256 92 II-E----------------EARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPAL 151 (436)
T ss_pred HH-H----------------HHHHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHH
Confidence 22 1 11123345789999999996 455677777654 46666666 66666331 11
Q ss_pred cCCCeEEEecCCCHHhHHHHHHHhhcCCCCC-----CccHHHHHHHHHHHhcCChHH
Q 001161 340 CGVDEVYQMKELVHDDALRLFSRHAFEGDHP-----HESHTELACKIIKYARGVPLA 391 (1134)
Q Consensus 340 ~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-----~~~~~~~~~~i~~~~~GlPLa 391 (1134)
.....++++++|+.+|-.+++.+.+-..... ..-.++..+.++..++|---+
T Consensus 152 lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred hhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 1335789999999999999998843221111 112244566788888886443
No 54
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.66 E-value=1.7e-08 Score=110.66 Aligned_cols=281 Identities=17% Similarity=0.189 Sum_probs=182.0
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHh
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKK 292 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~ 292 (1134)
...|.+.++|.|||||||++-.+.. ++..|+..++..+.....+...+.... ...+.-.. ..-+.....+..+
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~---ag~~gl~~---~~g~~~~~~~~~~ 84 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTL---AGALGLHV---QPGDSAVDTLVRR 84 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHH---Hhhccccc---ccchHHHHHHHHH
Confidence 3467899999999999999999999 888999888776665555443322221 11111111 1112224456677
Q ss_pred hcCCcceEEEecCCChHH-HHHHhcCcCCCCCCcEEEEEeCChhhhhhcCCCeEEEecCCCHH-hHHHHHHHhhcCCCC-
Q 001161 293 LTRKKVLIVFDDVNHPRQ-IKILVGRLDLLASGSRIIITTRDRQVLANCGVDEVYQMKELVHD-DALRLFSRHAFEGDH- 369 (1134)
Q Consensus 293 L~~k~~LlVLDdv~~~~~-l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~~~~~~~~l~~L~~~-ea~~Lf~~~af~~~~- 369 (1134)
..+++.++|+||..+..+ -..+...+....+.-+|+.|+|..... ..+..+.++.|+.. ++.++|...+.....
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccc
Confidence 788999999999876543 333333333335566788999876432 23556778888766 799998877632221
Q ss_pred --CCccHHHHHHHHHHHhcCChHHHHHHHHHhcCCCHHHHHHHHHH----HHcC------CCCchhhhhhhhhcCCCHHH
Q 001161 370 --PHESHTELACKIIKYARGVPLALEVLGRYLYGKRREVWENAISK----WETA------PPKGIQDALKISYDGLDDKE 437 (1134)
Q Consensus 370 --~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~----l~~~------~~~~i~~~l~~sy~~L~~~~ 437 (1134)
-.........+|.+...|.|++|..+++..+.-...+-..-++. +... ........+..||.-|..-+
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 12333566789999999999999999999877655443333322 2222 12456778999999999999
Q ss_pred HHHHHhhhcccCCCCHHHHHHHhhh-----CCCchhcchHHhhccCCeeEec---CCeEEEChhHHHHHHHHhh
Q 001161 438 QNVFLDIACFFIDDDRDTVTKFLDD-----CEFFATSGIEVLVDKHLITISV---RNKIKMHDLLRAMGREIVR 503 (1134)
Q Consensus 438 k~~fl~~a~f~~~~~~~~l~~~~~~-----~~~~~~~~i~~L~~~sLi~~~~---~~~~~mHdlv~~~~~~i~~ 503 (1134)
+..|-.++.|...++.+........ ..+.....+..+++++++...+ ...++.-+-.+.|+.+...
T Consensus 242 ~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~ 315 (414)
T COG3903 242 RALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELH 315 (414)
T ss_pred HHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888876633222111 1222344577789999987654 2234444555555555443
No 55
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.65 E-value=7.7e-07 Score=106.19 Aligned_cols=245 Identities=13% Similarity=0.077 Sum_probs=128.9
Q ss_pred CccCCccccchhHHHHHHhhcc---CCCCeeEEEEEecCCChHHHHHHHHHHHHhcc-----CC--ceeeeeechhHhhc
Q 001161 189 SENEDLVGVRLPMKEIESLLRT---GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH-----FA--GSFFARNVREAEET 258 (1134)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~--~~~~~~~~~~~~~~ 258 (1134)
..++.++|||.++++|...|.. ++....++.|+|++|.|||+.++.|.+++... .+ ..+++.+. .-
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm----~L 827 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM----NV 827 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC----cc
Confidence 4567899999999999988764 23334677899999999999999999876432 11 13344321 11
Q ss_pred CCHHHHHHHHHHHHhcCCCCC-CCccccHHHHHHhhc---CCcceEEEecCCChH--HHHHHhcCcCCC-CCCcEEEE--
Q 001161 259 GRLGDLRQQLLSTLLNDGNVK-NFPNIDLNFQSKKLT---RKKVLIVFDDVNHPR--QIKILVGRLDLL-ASGSRIII-- 329 (1134)
Q Consensus 259 ~~~~~l~~~ll~~l~~~~~~~-~~~~~~~~~l~~~L~---~k~~LlVLDdv~~~~--~l~~l~~~~~~~-~~gsrIii-- 329 (1134)
.....+...+..++....... .........+...+. +...+||||+|+... +-+.|...+.|. ..+++|++
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIG 907 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIA 907 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEE
Confidence 234455555555554332211 122223333333331 224589999997543 112222222221 24556544
Q ss_pred EeCChh--------hhhhcCCCeEEEecCCCHHhHHHHHHHhhcCCC-CCC-ccHHHHHHHHHHHhcCChHHHHHHHHHh
Q 001161 330 TTRDRQ--------VLANCGVDEVYQMKELVHDDALRLFSRHAFEGD-HPH-ESHTELACKIIKYARGVPLALEVLGRYL 399 (1134)
Q Consensus 330 TTR~~~--------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~-~~~-~~~~~~~~~i~~~~~GlPLal~~~g~~L 399 (1134)
+|.+.. +...++ ...+..++++.++-.+++..++-... ... +..+-+|+.++...|..-.||.++-.+.
T Consensus 908 ISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 908 ISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred ecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 332211 112222 22356799999999999999884321 111 2222223333333344455555544333
Q ss_pred cC--C---CHHHHHHHHHHHHcCCCCchhhhhhhhhcCCCHHHHHHHHhhh
Q 001161 400 YG--K---RREVWENAISKWETAPPKGIQDALKISYDGLDDKEQNVFLDIA 445 (1134)
Q Consensus 400 ~~--~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a 445 (1134)
.. . ..+.-..+..++... .+.-....||.++|-++..++
T Consensus 987 EikegskVT~eHVrkAleeiE~s-------rI~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 987 ENKRGQKIVPRDITEATNQLFDS-------PLTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred hhcCCCccCHHHHHHHHHHHHhh-------hHHHHHHcCCHHHHHHHHHHH
Confidence 21 1 223333343333221 122334678888877666444
No 56
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.55 E-value=1.2e-06 Score=94.09 Aligned_cols=175 Identities=16% Similarity=0.189 Sum_probs=103.9
Q ss_pred cCCccc--cchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHH
Q 001161 191 NEDLVG--VRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQL 268 (1134)
Q Consensus 191 ~~~~vG--r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 268 (1134)
.++|++ .+..++++.+++.. ...+.|.|+|++|+|||+||+.++++........+|+... ..... . ..+
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~-~~~~~--~----~~~ 84 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA-ELAQA--D----PEV 84 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH-HHHHh--H----HHH
Confidence 345552 34467777776542 3456799999999999999999998766554445555321 11100 0 011
Q ss_pred HHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH---H-HHHHhcCcCC-CCCCcEEEEEeCChh--------
Q 001161 269 LSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR---Q-IKILVGRLDL-LASGSRIIITTRDRQ-------- 335 (1134)
Q Consensus 269 l~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~---~-l~~l~~~~~~-~~~gsrIiiTTR~~~-------- 335 (1134)
+ +.+. +.-+|||||++... . .+.+...+.. ...+.++|+||+...
T Consensus 85 ~---------------------~~~~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~ 142 (226)
T TIGR03420 85 L---------------------EGLE-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLP 142 (226)
T ss_pred H---------------------hhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccH
Confidence 1 1112 22489999997543 1 2333322211 123457889887432
Q ss_pred -hhhhcCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHHHH
Q 001161 336 -VLANCGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLGRY 398 (1134)
Q Consensus 336 -~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~ 398 (1134)
+.........+++++++.++...++...+-+.. ..-..+....+++.+.|+|..+..+...
T Consensus 143 ~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~--~~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 143 DLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG--LQLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 122222245789999999999999887653221 1223466778888899999887766543
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.53 E-value=3.6e-07 Score=102.51 Aligned_cols=164 Identities=27% Similarity=0.384 Sum_probs=83.0
Q ss_pred cCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCC-cCcccCccccCCCCCCE
Q 001161 723 ECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGT-AIRELPPSIVRLKSVRA 801 (1134)
Q Consensus 723 ~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n-~i~~lp~~~~~l~~L~~ 801 (1134)
..+.+++.|++++|. +..+|. -.++|+.|.+++|..+..+|..+. ++|+.|.+++| .+..+|. +|+.
T Consensus 49 ~~~~~l~~L~Is~c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 49 EEARASGRLYIKDCD-IESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHhcCCCEEEeCCCC-CcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccce
Confidence 345666777777663 445552 223577777776666665655442 45666666655 4444432 2344
Q ss_pred EEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccccccccCcceeecCCCC-c--cccccchhCCCCCcEEEeccc
Q 001161 802 IYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNN-F--ERIPESIIQLSNLEWLFIRYC 878 (1134)
Q Consensus 802 L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~-l--~~lp~~l~~l~~L~~L~Ls~n 878 (1134)
|++..+. +. .+..+|. +|+.|.+.+++ . ..+|.. -.++|++|++++|
T Consensus 117 L~L~~n~-~~---------------------~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c 166 (426)
T PRK15386 117 LEIKGSA-TD---------------------SIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGC 166 (426)
T ss_pred EEeCCCC-Cc---------------------ccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCC
Confidence 4443322 11 1122332 34455553322 1 111210 1156777888777
Q ss_pred cCCCccCCcCCCcCeEeccCCc--ccccccCCCCCCCCccceeeeccCCCCCCcccc
Q 001161 879 ERLQSLPKLPCNLIWLDAHHCT--ALESLPGLFPSSNESYLRTLYLSDNFKLDPNDL 933 (1134)
Q Consensus 879 ~~l~~lp~~~~~L~~L~l~~c~--~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l 933 (1134)
......+.+|.+|+.|++++|. .++.....+| +++ .|++.+|++++.+.+
T Consensus 167 ~~i~LP~~LP~SLk~L~ls~n~~~sLeI~~~sLP----~nl-~L~f~n~lkL~~~~f 218 (426)
T PRK15386 167 SNIILPEKLPESLQSITLHIEQKTTWNISFEGFP----DGL-DIDLQNSVLLSPDVF 218 (426)
T ss_pred CcccCcccccccCcEEEecccccccccCcccccc----ccc-EechhhhcccCHHHh
Confidence 7654333477788888877643 2222222332 334 677777766655544
No 58
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.51 E-value=1.7e-06 Score=101.18 Aligned_cols=180 Identities=19% Similarity=0.309 Sum_probs=108.2
Q ss_pred CCccCCccccchhHHH---HHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHH
Q 001161 188 QSENEDLVGVRLPMKE---IESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDL 264 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 264 (1134)
|...+++||.+..+.. +..++.. .....+.++|++|+||||+|+.+++.....|.. +... ..+...+
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a~-----~~~~~~i 77 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSAV-----TSGVKDL 77 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eecc-----cccHHHH
Confidence 4456679999888666 7777753 345578899999999999999999876544421 1110 1112221
Q ss_pred HHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEE--EeCChh--hhh
Q 001161 265 RQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIII--TTRDRQ--VLA 338 (1134)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIii--TTR~~~--~~~ 338 (1134)
++++.... .....+++.+|++|+++.. .+.+.+...+. .|..++| ||.+.. +..
T Consensus 78 -r~ii~~~~----------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 78 -REVIEEAR----------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNP 137 (413)
T ss_pred -HHHHHHHH----------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccH
Confidence 11211110 0111347789999999754 45556655543 3444544 344332 111
Q ss_pred -hcCCCeEEEecCCCHHhHHHHHHHhhcCCCCCC-ccHHHHHHHHHHHhcCChHHHHHHHH
Q 001161 339 -NCGVDEVYQMKELVHDDALRLFSRHAFEGDHPH-ESHTELACKIIKYARGVPLALEVLGR 397 (1134)
Q Consensus 339 -~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~GlPLal~~~g~ 397 (1134)
......++++.+++.++..+++.+.+....... .-..+....+++.++|.+..+..+..
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 112236789999999999999988653211111 22356677899999999877655443
No 59
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.50 E-value=1.7e-08 Score=118.53 Aligned_cols=172 Identities=27% Similarity=0.286 Sum_probs=106.8
Q ss_pred CCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEcc
Q 001161 703 GNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAV 782 (1134)
Q Consensus 703 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~ 782 (1134)
.+++.|++.+|.|..+...+..+++|++|+|++|.+...-+ +..++.|+.|++++|.+... ..+..+++|+.++++
T Consensus 95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLS 170 (414)
T ss_pred cceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhcccCC
Confidence 35555555566666665556667777777777777554432 45666677777777765432 234446777777777
Q ss_pred CCcCcccCcc-ccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCcccccccc--CcceeecCCCCccc
Q 001161 783 GTAIRELPPS-IVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESLGLLS--LVTELHLEGNNFER 859 (1134)
Q Consensus 783 ~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~--~L~~L~Ls~n~l~~ 859 (1134)
+|.+..+... ...+.+|+.+.+.+|. ..... .+..+..+..+++..|.++.+-. +..+. .|+.+++++|.+..
T Consensus 171 ~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~--~~~~~~~l~~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~ 246 (414)
T KOG0531|consen 171 YNRIVDIENDELSELISLEELDLGGNS-IREIE--GLDLLKKLVLLSLLDNKISKLEG-LNELVMLHLRELYLSGNRISR 246 (414)
T ss_pred cchhhhhhhhhhhhccchHHHhccCCc-hhccc--chHHHHHHHHhhcccccceeccC-cccchhHHHHHHhcccCcccc
Confidence 7777766553 4667777777777766 22211 22233444445777777665421 12222 37888888888887
Q ss_pred cccchhCCCCCcEEEeccccCCC
Q 001161 860 IPESIIQLSNLEWLFIRYCERLQ 882 (1134)
Q Consensus 860 lp~~l~~l~~L~~L~Ls~n~~l~ 882 (1134)
++..+..+.++..|++.+|+...
T Consensus 247 ~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 247 SPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred ccccccccccccccchhhccccc
Confidence 76677778888888888776543
No 60
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.49 E-value=6.3e-07 Score=97.55 Aligned_cols=144 Identities=26% Similarity=0.357 Sum_probs=105.5
Q ss_pred CCCCccEEEcccccccccchHHHHHHHHhhCCCceEecC-CCCCCCcchHHHHHHHHhcccEEEEecCCccc--------
Q 001161 18 PEVQYDVFLSFRGEDTRENFTSHLYSALSRESIETFIDD-DLRRGDEISQSLLDAIEASSISIIVFSERYAS-------- 88 (1134)
Q Consensus 18 ~~~~~dvFis~~~~D~r~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~-------- 88 (1134)
...+.|||||||..- -...++-|.-.|.-+|++||||- .+..|. +...+.+.|..++.+|.|++||..+
T Consensus 609 ~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nC 686 (832)
T KOG3678|consen 609 LSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC 686 (832)
T ss_pred ccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence 457789999997653 47888999999999999999997 777776 5668999999999999999998754
Q ss_pred chhhHHHHHHHHHhhhccCcEEEeEEeeecccccccccccchhhHHhhcccChhhHHHHHHHHHHhcccccccccCCchh
Q 001161 89 SRWCLDELLKILECKKEYAQIVIPACYRVDPSHVRKQTGNFGDSFLKLGERFPDKMQSWRNALTEAADLSGFDSRVYRTE 168 (1134)
Q Consensus 89 s~wc~~El~~~~~~~~~~~~~v~pvf~~v~p~~vr~q~g~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~e 168 (1134)
-.|.-.|+..+++|.+. +||||-. .| + ++++-....+....+....|.... ..++
T Consensus 687 eDWVHKEl~~Afe~~KN----IiPI~D~-----------aF----E-----~Pt~ed~iPnDirmi~kyNGvKWv-HdYQ 741 (832)
T KOG3678|consen 687 EDWVHKELKCAFEHQKN----IIPIFDT-----------AF----E-----FPTKEDQIPNDIRMITKYNGVKWV-HDYQ 741 (832)
T ss_pred HHHHHHHHHHHHHhcCC----eeeeecc-----------cc----c-----CCCchhcCcHHHHHHHhccCeeee-hhhH
Confidence 35777899988888764 9999832 11 1 222222223334445666665444 4556
Q ss_pred HHHHHHHHHHHHhhccccCC
Q 001161 169 SALIEEIVNAILKRVDDTFQ 188 (1134)
Q Consensus 169 ~~~i~~i~~~v~~~l~~~~~ 188 (1134)
..-++++|+-+..+++.+.|
T Consensus 742 dA~maKvvRFitGe~nRttp 761 (832)
T KOG3678|consen 742 DACMAKVVRFITGELNRTTP 761 (832)
T ss_pred HHHHHHHHHHHhccccCCCC
Confidence 66788999888888776654
No 61
>PLN03150 hypothetical protein; Provisional
Probab=98.44 E-value=3.5e-07 Score=112.38 Aligned_cols=104 Identities=26% Similarity=0.401 Sum_probs=77.3
Q ss_pred cceeEecCcCcc-ccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccC
Q 001161 705 IETMHLDGTALE-ELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVG 783 (1134)
Q Consensus 705 L~~L~L~~n~i~-~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~ 783 (1134)
++.|+|++|.+. .+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++.+.+|+.++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 455556666665 5677788888888888888888778887788888888888888888888888888888888888888
Q ss_pred CcCc-ccCccccCC-CCCCEEEecCCC
Q 001161 784 TAIR-ELPPSIVRL-KSVRAIYFGRNR 808 (1134)
Q Consensus 784 n~i~-~lp~~~~~l-~~L~~L~l~~n~ 808 (1134)
|.++ .+|..+..+ .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 8877 677666542 345566666554
No 62
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.42 E-value=2.1e-08 Score=117.81 Aligned_cols=218 Identities=24% Similarity=0.224 Sum_probs=126.1
Q ss_pred ccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCccCcCcccEEEecCCCCCCCcccccCCCcceeE
Q 001161 630 NHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRIHLELLKELNLSGCSKLKRLPEISSGNIETMH 709 (1134)
Q Consensus 630 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~ 709 (1134)
.+..++.+.+..+..-. ....+..+++|+.|++.+|.+.......-.+++|++|+|++
T Consensus 70 ~l~~l~~l~l~~n~i~~---~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~------------------- 127 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK---ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF------------------- 127 (414)
T ss_pred HhHhHHhhccchhhhhh---hhcccccccceeeeeccccchhhcccchhhhhcchheeccc-------------------
Confidence 44555555544443221 01225556666666666655444322122455555555555
Q ss_pred ecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCC-ccccCCCCCcEEEccCCcCcc
Q 001161 710 LDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLP-EELGYLEALDSLHAVGTAIRE 788 (1134)
Q Consensus 710 L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p-~~~~~l~~L~~L~L~~n~i~~ 788 (1134)
|.|+.+.. +..++.|+.|++++|.+... ..+..+++|+.+++++|.+...-+ . ...+.+|+.+++.+|.+..
T Consensus 128 ---N~I~~i~~-l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 128 ---NKITKLEG-LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred ---cccccccc-hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 44544432 44555566666666664332 123446666677777666544333 2 4566777777777777765
Q ss_pred cCccccCCCCCCEEEecCCCCCCCCcccccCCCC--CCCEEeccCCCCCCCccccccccCcceeecCCCCccccccchhC
Q 001161 789 LPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQ--NLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPESIIQ 866 (1134)
Q Consensus 789 lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~--~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~ 866 (1134)
+. .+..+..+..+++..|. +..... +..+. .|+.+++++|.+..++..+..+..+..|++.+|++..+. .+..
T Consensus 201 i~-~~~~~~~l~~~~l~~n~-i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~ 275 (414)
T KOG0531|consen 201 IE-GLDLLKKLVLLSLLDNK-ISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE-GLER 275 (414)
T ss_pred cc-chHHHHHHHHhhccccc-ceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhccccccc-cccc
Confidence 43 22333444444666665 222211 11222 388999999999988777888899999999999888664 4556
Q ss_pred CCCCcEEEeccccCC
Q 001161 867 LSNLEWLFIRYCERL 881 (1134)
Q Consensus 867 l~~L~~L~Ls~n~~l 881 (1134)
.+.+..+....+++.
T Consensus 276 ~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 276 LPKLSELWLNDNKLA 290 (414)
T ss_pred cchHHHhccCcchhc
Confidence 666777777766644
No 63
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=6e-06 Score=98.64 Aligned_cols=193 Identities=14% Similarity=0.141 Sum_probs=112.4
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc--CCceeeeeechhHhhcCCHHHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH--FAGSFFARNVREAEETGRLGDLR 265 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~ 265 (1134)
|...+++||.+..++.|..++..+. -.+.+.++|..|+||||+|+.+++.+... .... ..+.-...
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~-----------PCG~C~sC 79 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQ-----------PCGVCRAC 79 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCC-----------CCcccHHH
Confidence 4566789999999999999987442 24566799999999999999999865321 1000 00000000
Q ss_pred HHHHHHHhcCC-CCCCCccccHHHHHHh--------hcCCcceEEEecCCChHH--HHHHhcCcCCCCCCcEEEEEeCCh
Q 001161 266 QQLLSTLLNDG-NVKNFPNIDLNFQSKK--------LTRKKVLIVFDDVNHPRQ--IKILVGRLDLLASGSRIIITTRDR 334 (1134)
Q Consensus 266 ~~ll~~l~~~~-~~~~~~~~~~~~l~~~--------L~~k~~LlVLDdv~~~~~--l~~l~~~~~~~~~gsrIiiTTR~~ 334 (1134)
+.+...-..+. .........++.+++. ...+.-++|||+++.... +..|+..+.......++|+||++.
T Consensus 80 r~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 80 REIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred HHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 00000000000 0000000111111111 123445888999987643 677776666556788888888776
Q ss_pred hhhh-h-cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCCh-HHHHH
Q 001161 335 QVLA-N-CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVP-LALEV 394 (1134)
Q Consensus 335 ~~~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~ 394 (1134)
+-+. . ......+.++.++.++..+.+.+.+-... .....+..+.|++.++|.. -|+..
T Consensus 160 ~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg--I~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 160 QKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER--IAFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred hhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4432 2 12336789999999999999888763322 1223566778899998865 34444
No 64
>PLN03150 hypothetical protein; Provisional
Probab=98.42 E-value=5e-07 Score=111.07 Aligned_cols=65 Identities=25% Similarity=0.351 Sum_probs=33.8
Q ss_pred cCCCCCCCEEeccCCCCC-CCccccccccCcceeecCCCCcc-ccccchhCC-CCCcEEEeccccCCC
Q 001161 818 VDGLQNLRDLNLNDCGIT-ELPESLGLLSLVTELHLEGNNFE-RIPESIIQL-SNLEWLFIRYCERLQ 882 (1134)
Q Consensus 818 ~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l-~~L~~L~Ls~n~~l~ 882 (1134)
+..+++|+.|+|++|+++ .+|..++.+++|+.|+|++|+++ .+|..+..+ .++..+++.+|+.+.
T Consensus 462 ~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 462 LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 344444444444445454 35555555566666666666555 555555432 344555565555443
No 65
>PRK04195 replication factor C large subunit; Provisional
Probab=98.41 E-value=6.5e-06 Score=98.35 Aligned_cols=185 Identities=16% Similarity=0.165 Sum_probs=111.6
Q ss_pred cCCCccCCccccchhHHHHHHhhccC--CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHH
Q 001161 186 TFQSENEDLVGVRLPMKEIESLLRTG--STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGD 263 (1134)
Q Consensus 186 ~~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 263 (1134)
..|...++++|.+..++++..++..- +...+.+.|+|++|+||||+|+++++.+. |+.. .+ + .+.... ..
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~i-el-n---asd~r~-~~ 79 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEVI-EL-N---ASDQRT-AD 79 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCEE-EE-c---cccccc-HH
Confidence 34556678999999999999988642 22267899999999999999999998763 2211 11 1 111111 12
Q ss_pred HHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH------HHHHHhcCcCCCCCCcEEEEEeCChhhh
Q 001161 264 LRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR------QIKILVGRLDLLASGSRIIITTRDRQVL 337 (1134)
Q Consensus 264 l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~------~l~~l~~~~~~~~~gsrIiiTTR~~~~~ 337 (1134)
...+++....... .....++-+||+|+++... .+..+...+. ..+..||+|+.+..-.
T Consensus 80 ~i~~~i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~ 143 (482)
T PRK04195 80 VIERVAGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDP 143 (482)
T ss_pred HHHHHHHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCcccc
Confidence 2223322211110 0011356799999997642 2444444333 2344566666543211
Q ss_pred h---hcCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHH
Q 001161 338 A---NCGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLG 396 (1134)
Q Consensus 338 ~---~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 396 (1134)
. .......+++.+++.++....+...+...... -..+....|++.++|..-.+....
T Consensus 144 ~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR~ain~L 203 (482)
T PRK04195 144 SLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLRSAINDL 203 (482)
T ss_pred chhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 11234578999999999998888766433221 225678889999998766554433
No 66
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.40 E-value=2.6e-06 Score=87.28 Aligned_cols=176 Identities=19% Similarity=0.263 Sum_probs=98.0
Q ss_pred CCCccCCccccchhHHHHHHhhcc---CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHH
Q 001161 187 FQSENEDLVGVRLPMKEIESLLRT---GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGD 263 (1134)
Q Consensus 187 ~~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 263 (1134)
.|...++|||.+.-++.+.-++.. ..+....+.+||++|.||||||..+++.....|. +.... ... ...+
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~sg~-~i~---k~~d 91 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITSGP-AIE---KAGD 91 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEECC-C-----SCHH
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---eccch-hhh---hHHH
Confidence 355678999999999887766543 2345677999999999999999999998877663 11100 000 1111
Q ss_pred HHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh--HHHHHHhcCcCCC--------CCC---------
Q 001161 264 LRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP--RQIKILVGRLDLL--------ASG--------- 324 (1134)
Q Consensus 264 l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~--------~~g--------- 324 (1134)
+.. + ...++ ++-+|.+|+++.. .+-+.|.+....+ +++
T Consensus 92 l~~-i---------------------l~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 92 LAA-I---------------------LTNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp HHH-H---------------------HHT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred HHH-H---------------------HHhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 111 1 11122 4457888999654 3444444333221 222
Q ss_pred --cEEEEEeCChhhhhhcCC--CeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHH
Q 001161 325 --SRIIITTRDRQVLANCGV--DEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEV 394 (1134)
Q Consensus 325 --srIiiTTR~~~~~~~~~~--~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 394 (1134)
+-|=-|||...+...... .-+.+++..+.+|-.++..+.+.. -..+-..+.+.+|+.++.|-|--.--
T Consensus 149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~--l~i~i~~~~~~~Ia~rsrGtPRiAnr 220 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI--LNIEIDEDAAEEIARRSRGTPRIANR 220 (233)
T ss_dssp --EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHC--TT-EE-HHHHHHHHHCTTTSHHHHHH
T ss_pred CceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHH--hCCCcCHHHHHHHHHhcCCChHHHHH
Confidence 223457887655433321 235589999999999999987733 22344567899999999999954433
No 67
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.39 E-value=4.4e-06 Score=95.84 Aligned_cols=202 Identities=15% Similarity=0.109 Sum_probs=109.5
Q ss_pred CCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccC-Cc-eeeeeechhHhhcCCHHHH
Q 001161 187 FQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF-AG-SFFARNVREAEETGRLGDL 264 (1134)
Q Consensus 187 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~l 264 (1134)
.|...++++|++..++.+..++..+ ..+.+.++|++|+||||+|+++++.+.... .. .+++. ....... ....+
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~-~~~~~ 85 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQ-GKKYL 85 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhc-chhhh
Confidence 3445578999999999999988643 334688999999999999999998764332 22 23332 1111000 00000
Q ss_pred HH--HHHHHHhcCCCCCCCccccHHH-HHHh-----hcCCcceEEEecCCChH--HHHHHhcCcCCCCCCcEEEEEeCCh
Q 001161 265 RQ--QLLSTLLNDGNVKNFPNIDLNF-QSKK-----LTRKKVLIVFDDVNHPR--QIKILVGRLDLLASGSRIIITTRDR 334 (1134)
Q Consensus 265 ~~--~ll~~l~~~~~~~~~~~~~~~~-l~~~-----L~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIiiTTR~~ 334 (1134)
.. ...................... ++.. +...+-+||+||++... ..+.+...+......+++|+||...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 00 0000000000000000001111 1111 11334589999997553 2334443333334567788877543
Q ss_pred -hhhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHH
Q 001161 335 -QVLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEV 394 (1134)
Q Consensus 335 -~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 394 (1134)
.+.... .....+++.+++.++..+++...+-.... .-..+.+..++++++|.+-.+..
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV--DYDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 222221 22357889999999999988886633221 12356778888999887655443
No 68
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=7.6e-06 Score=93.98 Aligned_cols=193 Identities=14% Similarity=0.113 Sum_probs=111.2
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQ 267 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 267 (1134)
|...++++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++.+........ ...+.-....+
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~---------~pc~~c~~c~~ 81 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS---------NPCRKCIICKE 81 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC---------CCCCCCHHHHH
Confidence 4556789999999999998886432 2456789999999999999999987642110000 00000000000
Q ss_pred HHHHHhc-----CCCCCCCccccHHHHHHhh-----cCCcceEEEecCCChH--HHHHHhcCcCCCCCCcEEEEEeCChh
Q 001161 268 LLSTLLN-----DGNVKNFPNIDLNFQSKKL-----TRKKVLIVFDDVNHPR--QIKILVGRLDLLASGSRIIITTRDRQ 335 (1134)
Q Consensus 268 ll~~l~~-----~~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIiiTTR~~~ 335 (1134)
+...... +.......+. .+.+.+.+ .+++-++|+|+++... .++.+...+....+..++|++|.+..
T Consensus 82 ~~~~~~~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~ 160 (363)
T PRK14961 82 IEKGLCLDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVE 160 (363)
T ss_pred HhcCCCCceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChH
Confidence 0000000 0000000000 11111111 2345599999998665 36667766665566777777775543
Q ss_pred -hhhh-cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHH
Q 001161 336 -VLAN-CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALE 393 (1134)
Q Consensus 336 -~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 393 (1134)
+... .+....+++++++.++..+.+...+.... ..-..+.+..|++.++|.|-.+.
T Consensus 161 ~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g--~~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 161 KIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES--IDTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred hhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 3322 22346889999999999988887663322 11224567788999999885433
No 69
>PF13173 AAA_14: AAA domain
Probab=98.38 E-value=1.4e-06 Score=84.09 Aligned_cols=120 Identities=16% Similarity=0.142 Sum_probs=77.7
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhc
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLT 294 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~ 294 (1134)
.+++.|.|+.|+|||||+++++.+.. .-...+|+... .... .... . .+ ..+.+.+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~-~~~~----~~~~--~-------------~~-~~~~~~~~~~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFD-DPRD----RRLA--D-------------PD-LLEYFLELIK 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccC-CHHH----HHHh--h-------------hh-hHHHHHHhhc
Confidence 36899999999999999999998765 22344444211 1110 0000 0 00 1233333334
Q ss_pred CCcceEEEecCCChHHHHHHhcCcCCCCCCcEEEEEeCChhhhhhc------CCCeEEEecCCCHHhH
Q 001161 295 RKKVLIVFDDVNHPRQIKILVGRLDLLASGSRIIITTRDRQVLANC------GVDEVYQMKELVHDDA 356 (1134)
Q Consensus 295 ~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~------~~~~~~~l~~L~~~ea 356 (1134)
.++.+|+||+|....+|......+...++..+|++|+.....+... |....+++.+|+-.|-
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 4778999999998888777766655555678999999988665331 2335689999998773
No 70
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.37 E-value=2.8e-06 Score=97.86 Aligned_cols=175 Identities=16% Similarity=0.194 Sum_probs=102.0
Q ss_pred CccCCccccchhHHHHHHhhccC-----------CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhh
Q 001161 189 SENEDLVGVRLPMKEIESLLRTG-----------STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEE 257 (1134)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 257 (1134)
...+++.|++..++++.+.+... -...+-|.++|++|+|||++|+++++.....|-....
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~--------- 189 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG--------- 189 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecch---------
Confidence 34467899999999998876421 1224568999999999999999999877554421110
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHh-hcCCcceEEEecCCChH----------------HHHHHhcCcCC
Q 001161 258 TGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKK-LTRKKVLIVFDDVNHPR----------------QIKILVGRLDL 320 (1134)
Q Consensus 258 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~ 320 (1134)
..+....... .......+.+. -...+.+|+||+++... .+..+...+..
T Consensus 190 ----~~l~~~~~g~----------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 190 ----SELVRKYIGE----------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG 255 (364)
T ss_pred ----HHHHHHhhhH----------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC
Confidence 0111111000 00001111111 23467899999987531 13333333222
Q ss_pred C--CCCcEEEEEeCChhhhh-----hcCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCCh
Q 001161 321 L--ASGSRIIITTRDRQVLA-----NCGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVP 389 (1134)
Q Consensus 321 ~--~~gsrIiiTTR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 389 (1134)
. ..+.+||.||.....+. ....+..++++..+.++..++|..++.+...... .....+++.+.|..
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 1 34677888887553322 1133568999999999999999988755432221 11345666776653
No 71
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=5.6e-06 Score=97.92 Aligned_cols=194 Identities=14% Similarity=0.127 Sum_probs=111.9
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQ 267 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 267 (1134)
|...+++||.+...+.|..++..+. -.+.+.++|+.|+||||+|+.+++.+..... ... ...+.-...+.
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~----~~~-----~pCg~C~sC~~ 80 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETG----VTS-----TPCEVCATCKA 80 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcC----CCC-----CCCccCHHHHH
Confidence 4566789999999999999987543 2467899999999999999999986532110 000 00000000000
Q ss_pred HHHHHhcCCC-CCCCccccHHHHHHh--------hcCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeCChhh
Q 001161 268 LLSTLLNDGN-VKNFPNIDLNFQSKK--------LTRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTRDRQV 336 (1134)
Q Consensus 268 ll~~l~~~~~-~~~~~~~~~~~l~~~--------L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR~~~~ 336 (1134)
+...-..+-. ...........+++. ..+++-++|+|+|+.. .....|...+.....+.++|++|.+..-
T Consensus 81 I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~k 160 (702)
T PRK14960 81 VNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQK 160 (702)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHh
Confidence 0000000000 000000111111111 1245568999999765 3466666666555567788887776532
Q ss_pred hh-h-cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHH
Q 001161 337 LA-N-CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALE 393 (1134)
Q Consensus 337 ~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 393 (1134)
.. . ......+++.+++.++..+.+.+.+-+.. .....+.+..|++.++|.+-.+.
T Consensus 161 Ip~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg--I~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 161 LPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ--IAADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred hhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 21 1 12346889999999999998887663322 22235667789999999774443
No 72
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=2.3e-05 Score=89.19 Aligned_cols=202 Identities=13% Similarity=0.082 Sum_probs=113.3
Q ss_pred CCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhc-cC-CceeeeeechhHhhcCCHHHH
Q 001161 187 FQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISR-HF-AGSFFARNVREAEETGRLGDL 264 (1134)
Q Consensus 187 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f-~~~~~~~~~~~~~~~~~~~~l 264 (1134)
.|....+++|.+...+.+.+.+..+. -.+.+.++|+.|+||+|+|.++++.+-. .- ......... ......+-...
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~-~~l~~~~~c~~ 91 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP-TSLAIDPDHPV 91 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc-ccccCCCCChH
Confidence 35566789999999999999887542 2356889999999999999999986532 11 100000000 00000000001
Q ss_pred HHHHHHHHhc----------CCCCCCCccccHHHHH---Hhh-----cCCcceEEEecCCCh--HHHHHHhcCcCCCCCC
Q 001161 265 RQQLLSTLLN----------DGNVKNFPNIDLNFQS---KKL-----TRKKVLIVFDDVNHP--RQIKILVGRLDLLASG 324 (1134)
Q Consensus 265 ~~~ll~~l~~----------~~~~~~~~~~~~~~l~---~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~g 324 (1134)
.+.+...... ++.......-.++.++ +.+ .+++-++|+|+++.. .....|+..+....++
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 1111100000 0000000011122232 222 245669999999754 3456666665554566
Q ss_pred cEEEEEeCChh-hhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHH
Q 001161 325 SRIIITTRDRQ-VLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLG 396 (1134)
Q Consensus 325 srIiiTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 396 (1134)
+.+|++|.+.. ++... .....+.+.+++.++..+++..... . .. .+....++..++|.|+....+.
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~--~-~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP--D-LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc--c-CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 77777776653 33222 2346889999999999999987541 1 11 1223678999999998665553
No 73
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=9.7e-06 Score=96.03 Aligned_cols=194 Identities=14% Similarity=0.114 Sum_probs=112.5
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhc--cCCceeeeeechhHhhcCCHHHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISR--HFAGSFFARNVREAEETGRLGDLR 265 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~l~ 265 (1134)
|...++++|.+...+.|..++..+. -.+.+.++|++|+||||+|+.+++.+.. .+...|+.... +.....+...
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s-c~~i~~~~h~-- 85 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES-CLAVRRGAHP-- 85 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh-hHHHhcCCCC--
Confidence 4456779999999999988887542 2356799999999999999999987642 22223332110 0000000000
Q ss_pred HHHHHHHhcCCCCCCCccccHHHHHHh-----hcCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeCCh-hhh
Q 001161 266 QQLLSTLLNDGNVKNFPNIDLNFQSKK-----LTRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTRDR-QVL 337 (1134)
Q Consensus 266 ~~ll~~l~~~~~~~~~~~~~~~~l~~~-----L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR~~-~~~ 337 (1134)
.+ ..+... .....+ .++.+++. ...++-++|+|+++.. ..++.|...+....+...+|++|... .+.
T Consensus 86 -dv-~el~~~--~~~~vd-~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~ 160 (504)
T PRK14963 86 -DV-LEIDAA--SNNSVE-DVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMP 160 (504)
T ss_pred -ce-EEeccc--ccCCHH-HHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCC
Confidence 00 000000 000000 01112221 1235568999999754 44667766665545566666655443 332
Q ss_pred hhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHH
Q 001161 338 ANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLAL 392 (1134)
Q Consensus 338 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 392 (1134)
... .....+++.+++.++..+.+.+.+-+... ....+.+..|++.++|.+--+
T Consensus 161 ~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi--~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 161 PTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR--EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred hHHhcceEEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 222 23468999999999999999887743322 123567788999999988544
No 74
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.34 E-value=3.2e-07 Score=75.55 Aligned_cols=59 Identities=32% Similarity=0.510 Sum_probs=50.8
Q ss_pred CCCCEEeccCCCCCCCcc-ccccccCcceeecCCCCccccc-cchhCCCCCcEEEeccccC
Q 001161 822 QNLRDLNLNDCGITELPE-SLGLLSLVTELHLEGNNFERIP-ESIIQLSNLEWLFIRYCER 880 (1134)
Q Consensus 822 ~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~~ 880 (1134)
|+|++|++++|+++.+|. .|..+++|++|+|++|+++.+| ..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578899999999998875 6788999999999999999887 4788999999999999864
No 75
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.34 E-value=1.9e-06 Score=83.70 Aligned_cols=114 Identities=19% Similarity=0.274 Sum_probs=74.8
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhcc-----CCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRH-----FAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNF 288 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~ 288 (1134)
+.+.+.|+|.+|+|||++++.+++.+... -...+|+. .........+..+++.++..............+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~ 78 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPLKSRQTSDELRSL 78 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCccccccCCHHHHHHH
Confidence 34678999999999999999999876543 23344552 2333378888899988887666554455556677
Q ss_pred HHHhhcCCc-ceEEEecCCCh---HHHHHHhcCcCCCCCCcEEEEEeCC
Q 001161 289 QSKKLTRKK-VLIVFDDVNHP---RQIKILVGRLDLLASGSRIIITTRD 333 (1134)
Q Consensus 289 l~~~L~~k~-~LlVLDdv~~~---~~l~~l~~~~~~~~~gsrIiiTTR~ 333 (1134)
+.+.+.+.+ .+||+|+++.. +.++.+....+ ..+.++|+..+.
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 777776655 59999999766 33555544333 667778877765
No 76
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.32 E-value=7.2e-06 Score=87.99 Aligned_cols=173 Identities=18% Similarity=0.224 Sum_probs=97.7
Q ss_pred cCCcc-ccchhH-HHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHH
Q 001161 191 NEDLV-GVRLPM-KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQL 268 (1134)
Q Consensus 191 ~~~~v-Gr~~~~-~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 268 (1134)
.++|+ |..... ..+.++.. +....+.+.|+|.+|+|||+||+++++.....-....++... .. ...+
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~-~~---------~~~~ 85 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA-SP---------LLAF 85 (227)
T ss_pred hcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH-Hh---------HHHH
Confidence 44555 554443 34444433 223446789999999999999999998764433344444211 10 0000
Q ss_pred HHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh--HHHHHHhcCcCCC-CCCc-EEEEEeCChhhhh------
Q 001161 269 LSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP--RQIKILVGRLDLL-ASGS-RIIITTRDRQVLA------ 338 (1134)
Q Consensus 269 l~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~-~~gs-rIiiTTR~~~~~~------ 338 (1134)
. ...+.-+||+||++.. .+.+.+...+... ..+. .+|+|++......
T Consensus 86 ----------------------~-~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L 142 (227)
T PRK08903 86 ----------------------D-FDPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDL 142 (227)
T ss_pred ----------------------h-hcccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHH
Confidence 0 0123347899999643 2223333222211 2333 3666666432111
Q ss_pred --hcCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHh
Q 001161 339 --NCGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLGRYL 399 (1134)
Q Consensus 339 --~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L 399 (1134)
.......++++++++++-..++...+-... ..-..+....+++...|++..+..+...+
T Consensus 143 ~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 143 RTRLGWGLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 222236789999999887777766442211 12235677788889999998887776654
No 77
>PRK08727 hypothetical protein; Validated
Probab=98.31 E-value=1.7e-05 Score=84.96 Aligned_cols=169 Identities=14% Similarity=0.081 Sum_probs=97.8
Q ss_pred cCCccccch-hHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHH
Q 001161 191 NEDLVGVRL-PMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLL 269 (1134)
Q Consensus 191 ~~~~vGr~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll 269 (1134)
.+.||+... .+..+..+.. + .....+.|+|..|+|||+||+++++....+...+.|+.. .+....+.
T Consensus 18 f~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~----------~~~~~~~~ 85 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL----------QAAAGRLR 85 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH----------HHhhhhHH
Confidence 345665543 3333333332 1 223469999999999999999999987766555666631 11111110
Q ss_pred HHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH---HH-HHHhcCcCC-CCCCcEEEEEeCCh---------h
Q 001161 270 STLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR---QI-KILVGRLDL-LASGSRIIITTRDR---------Q 335 (1134)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~---~l-~~l~~~~~~-~~~gsrIiiTTR~~---------~ 335 (1134)
. ..+.+ .+.-+||+||++... .+ +.+...+.. ...|..||+|++.. .
T Consensus 86 ~------------------~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~d 146 (233)
T PRK08727 86 D------------------ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPD 146 (233)
T ss_pred H------------------HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHH
Confidence 0 11111 233589999996431 12 222222211 13466799999853 2
Q ss_pred hhhhcCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHH
Q 001161 336 VLANCGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLAL 392 (1134)
Q Consensus 336 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 392 (1134)
+.........+++++++.++-.+++.+++.... ..-..+....+++.++|-.-.+
T Consensus 147 L~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~--l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 147 LRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG--LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhCCCCHHHH
Confidence 222222345889999999999999998775322 1223566777888887655444
No 78
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2e-05 Score=89.46 Aligned_cols=245 Identities=15% Similarity=0.176 Sum_probs=144.0
Q ss_pred CccCCccccchhHHHHHHhhccC--CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCc--eeeeeechhHhhcCCHHHH
Q 001161 189 SENEDLVGVRLPMKEIESLLRTG--STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAG--SFFARNVREAEETGRLGDL 264 (1134)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l 264 (1134)
..++.+.+|+.+++++...|... +....-+.|+|.+|.|||+.++.+++++....+. .+++.+ ....+..++
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc----~~~~t~~~i 89 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINC----LELRTPYQV 89 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEee----eeCCCHHHH
Confidence 34556999999999999877541 1222238999999999999999999988766543 466643 234456677
Q ss_pred HHHHHHHHhcCCCCCCCccccHHHHHHhhc--CCcceEEEecCCChHH-----HHHHhcCcCCCCCCcEE--EEEeCChh
Q 001161 265 RQQLLSTLLNDGNVKNFPNIDLNFQSKKLT--RKKVLIVFDDVNHPRQ-----IKILVGRLDLLASGSRI--IITTRDRQ 335 (1134)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~~-----l~~l~~~~~~~~~gsrI--iiTTR~~~ 335 (1134)
..+++.++...........+....+.+.+. ++.++||||+++.... +-.|....... .++| |..+-+..
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~ 167 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDK 167 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHH
Confidence 777777776333333444555666666665 4789999999975432 33333332222 3444 33443333
Q ss_pred hhh--------hcCCCeEEEecCCCHHhHHHHHHHhh---cCCCCCCccHHHHHHHHHHHhcC-ChHHHHHHH--HHhcC
Q 001161 336 VLA--------NCGVDEVYQMKELVHDDALRLFSRHA---FEGDHPHESHTELACKIIKYARG-VPLALEVLG--RYLYG 401 (1134)
Q Consensus 336 ~~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~a---f~~~~~~~~~~~~~~~i~~~~~G-lPLal~~~g--~~L~~ 401 (1134)
... ..+.. .+..++-+.+|-.+.+..++ |......++..+++..++.+.+| .=.|+..+- +.++.
T Consensus 168 ~~~~ld~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe 246 (366)
T COG1474 168 FLDYLDPRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAE 246 (366)
T ss_pred HHHHhhhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 222 22222 36788999999999988876 33344445556666666666665 333443332 22221
Q ss_pred C------CHHHHHHHHHHHHcCCCCchhhhhhhhhcCCCHHHHHHHHhhhcc
Q 001161 402 K------RREVWENAISKWETAPPKGIQDALKISYDGLDDKEQNVFLDIACF 447 (1134)
Q Consensus 402 ~------~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f 447 (1134)
+ +.+.-..+.... -.....-....|+.++|-.+..++..
T Consensus 247 ~~~~~~v~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~ki~L~~i~~~ 291 (366)
T COG1474 247 REGSRKVSEDHVREAQEEI-------ERDVLEEVLKTLPLHQKIVLLAIVEL 291 (366)
T ss_pred hhCCCCcCHHHHHHHHHHh-------hHHHHHHHHHcCCHhHHHHHHHHHHh
Confidence 1 112222221111 11223334678898888887766655
No 79
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.29 E-value=1.3e-06 Score=90.53 Aligned_cols=50 Identities=24% Similarity=0.401 Sum_probs=35.7
Q ss_pred CccccchhHHHHHHhhcc-CCCCeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 193 DLVGVRLPMKEIESLLRT-GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 193 ~~vGr~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
.||||+.+++++...+.. .....+.+.|+|++|+|||+|+++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999942 33456899999999999999999999988776
No 80
>PLN03025 replication factor C subunit; Provisional
Probab=98.29 E-value=4.9e-06 Score=93.99 Aligned_cols=185 Identities=14% Similarity=0.192 Sum_probs=108.6
Q ss_pred cCCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHh-ccCCceeeeeechhHhhcCCHHHH
Q 001161 186 TFQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKIS-RHFAGSFFARNVREAEETGRLGDL 264 (1134)
Q Consensus 186 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l 264 (1134)
..|...++++|.+..++.|..++..+ ..+.+.++|++|+||||+|+++++.+. ..|...+.-. ..+...+...+
T Consensus 7 yrP~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el---n~sd~~~~~~v 81 (319)
T PLN03025 7 YRPTKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL---NASDDRGIDVV 81 (319)
T ss_pred cCCCCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeee---cccccccHHHH
Confidence 34566678999999899898887643 344578999999999999999998763 3333221111 11222222222
Q ss_pred HHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH--HHHHHhcCcCCCCCCcEEEEEeCCh-hhhhhc-
Q 001161 265 RQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR--QIKILVGRLDLLASGSRIIITTRDR-QVLANC- 340 (1134)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIiiTTR~~-~~~~~~- 340 (1134)
++.+.......... -.++.-++|||+++... ....+...+......+++|+++... .+....
T Consensus 82 -r~~i~~~~~~~~~~-------------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~ 147 (319)
T PLN03025 82 -RNKIKMFAQKKVTL-------------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQ 147 (319)
T ss_pred -HHHHHHHHhccccC-------------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHH
Confidence 22222111110000 01345689999997653 3344444444445667777777543 222211
Q ss_pred CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHH
Q 001161 341 GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLA 391 (1134)
Q Consensus 341 ~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 391 (1134)
.....+++++++.++..+.+...+-+.... -..+....+++.++|..-.
T Consensus 148 SRc~~i~f~~l~~~~l~~~L~~i~~~egi~--i~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 148 SRCAIVRFSRLSDQEILGRLMKVVEAEKVP--YVPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred HhhhcccCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 122578999999999999888776432221 1245678888999887633
No 81
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.28 E-value=5.6e-06 Score=86.19 Aligned_cols=260 Identities=17% Similarity=0.201 Sum_probs=146.8
Q ss_pred CCccCCccccchhHHHHHHhhccC---CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTG---STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDL 264 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 264 (1134)
|....+|||.++..++|.-.+... ....-.|.++|++|.||||||.-+++++...+....=- ......++..
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp----~leK~gDlaa- 96 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGP----ALEKPGDLAA- 96 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccc----cccChhhHHH-
Confidence 455678999999998887766542 23455699999999999999999999876544311000 0000111111
Q ss_pred HHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChHH-HHH-HhcCcCC--------CCCCcEE-------
Q 001161 265 RQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPRQ-IKI-LVGRLDL--------LASGSRI------- 327 (1134)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~-l~~-l~~~~~~--------~~~gsrI------- 327 (1134)
+...|. ..=++.+|.+..... .++ +-+...+ .++++|.
T Consensus 97 ------------------------iLt~Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 97 ------------------------ILTNLE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred ------------------------HHhcCC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 111122 222556777754321 222 2222221 1344444
Q ss_pred ----EEEeCChhhhhhcC--CCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHhcC
Q 001161 328 ----IITTRDRQVLANCG--VDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLGRYLYG 401 (1134)
Q Consensus 328 ----iiTTR~~~~~~~~~--~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~ 401 (1134)
=-|||...+..... ..-+.+++--+.+|-.+...+.|.. -..+-..+-+.+|+++..|-|--..-+-...+
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~--l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVR- 228 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI--LGIEIDEEAALEIARRSRGTPRIANRLLRRVR- 228 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH--hCCCCChHHHHHHHHhccCCcHHHHHHHHHHH-
Confidence 35888765533221 1236678889999999999988732 22233456788999999999943322222221
Q ss_pred CCHHHHHHHHHHHHcCC------CCchhhhhhhhhcCCCHHHHHHHHhhhcccCCC--CHHHHHHHhhhCCCchhcchH-
Q 001161 402 KRREVWENAISKWETAP------PKGIQDALKISYDGLDDKEQNVFLDIACFFIDD--DRDTVTKFLDDCEFFATSGIE- 472 (1134)
Q Consensus 402 ~~~~~w~~~l~~l~~~~------~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~~~~~~~~i~- 472 (1134)
++.. ..... .......|.+--.+|+.-.++.+..+.-.+.+. ..+.+...+.....-.+..++
T Consensus 229 ----Dfa~----V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EP 300 (332)
T COG2255 229 ----DFAQ----VKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEP 300 (332)
T ss_pred ----HHHH----HhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhH
Confidence 1110 01100 012333455555678888888887777666444 456666665544333333333
Q ss_pred HhhccCCeeEecCCeE
Q 001161 473 VLVDKHLITISVRNKI 488 (1134)
Q Consensus 473 ~L~~~sLi~~~~~~~~ 488 (1134)
-|++.++|+....|++
T Consensus 301 yLiq~gfi~RTpRGR~ 316 (332)
T COG2255 301 YLIQQGFIQRTPRGRI 316 (332)
T ss_pred HHHHhchhhhCCCcce
Confidence 3888999988776665
No 82
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.28 E-value=2.5e-05 Score=88.88 Aligned_cols=186 Identities=15% Similarity=0.150 Sum_probs=108.5
Q ss_pred CCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHH
Q 001161 187 FQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQ 266 (1134)
Q Consensus 187 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 266 (1134)
.|...++++|++..++.+..++..+ ..+.+.|+|.+|+||||+|+.+++.+........++. . ..+...+...+..
T Consensus 12 rP~~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~-~~~~~~~~~~~~~ 87 (319)
T PRK00440 12 RPRTLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-L-NASDERGIDVIRN 87 (319)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-e-ccccccchHHHHH
Confidence 3455677999999999999998643 3345799999999999999999987643221111221 0 0011111111111
Q ss_pred HHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeCCh-hhhhh-cCC
Q 001161 267 QLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTRDR-QVLAN-CGV 342 (1134)
Q Consensus 267 ~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR~~-~~~~~-~~~ 342 (1134)
.+ .+...... .....+-+|++|+++.. +..+.+...+....+.+++|+++... .+... ...
T Consensus 88 ~i-~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 88 KI-KEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred HH-HHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 11 11111000 00123458999998654 23444554444445567777776433 22111 112
Q ss_pred CeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHH
Q 001161 343 DEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALE 393 (1134)
Q Consensus 343 ~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 393 (1134)
...+++++++.++....+...+..... .-..+.+..+++.++|.+--+.
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~--~i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGI--EITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 346899999999999888887743322 1235667888999999876543
No 83
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.3e-05 Score=97.72 Aligned_cols=186 Identities=15% Similarity=0.142 Sum_probs=113.3
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc-C-Cc-eeeeeec-h----------
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH-F-AG-SFFARNV-R---------- 253 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-~~-~~~~~~~-~---------- 253 (1134)
|...+++||-+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+... . .. .|..... .
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 4556789999999999998886432 23456899999999999999999876432 1 00 1110000 0
Q ss_pred ---hHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEE
Q 001161 254 ---EAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRII 328 (1134)
Q Consensus 254 ---~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIi 328 (1134)
......++..+ +++...+. ..-..+++-++|||+++.. +..+.|+..+.......++|
T Consensus 91 iEidAas~~kVDdI-ReLie~v~----------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFI 153 (944)
T PRK14949 91 IEVDAASRTKVDDT-RELLDNVQ----------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFL 153 (944)
T ss_pred EEeccccccCHHHH-HHHHHHHH----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 00000111111 12211110 0112346679999999754 45777777766556677777
Q ss_pred EEeCCh-hhhhh-cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHH
Q 001161 329 ITTRDR-QVLAN-CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALE 393 (1134)
Q Consensus 329 iTTR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 393 (1134)
++|.+. .+... ......|++.+|+.++..+.+.+.+-... .....+.+..|++.++|.|--+.
T Consensus 154 LaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 154 LATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred EECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 666554 33322 12236899999999999998887663321 22235677889999999885443
No 84
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=7.8e-06 Score=96.44 Aligned_cols=200 Identities=12% Similarity=0.070 Sum_probs=111.8
Q ss_pred CCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccC-CceeeeeechhHhhcCCHHHHH
Q 001161 187 FQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF-AGSFFARNVREAEETGRLGDLR 265 (1134)
Q Consensus 187 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~ 265 (1134)
.|...+++||-+..++.|...+..+. -.+.+.++|..|+||||+|+.+++.+-..- +..--+. ....+...-.
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-----~~PCG~C~sC 84 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-----AQPCGQCRAC 84 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-----CCCCcccHHH
Confidence 34566789999999999999987542 235678999999999999999998653210 0000000 0000000000
Q ss_pred HHHHHHHhcCC-CCCCCccccHHHHHHh--------hcCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeCCh
Q 001161 266 QQLLSTLLNDG-NVKNFPNIDLNFQSKK--------LTRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTRDR 334 (1134)
Q Consensus 266 ~~ll~~l~~~~-~~~~~~~~~~~~l~~~--------L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR~~ 334 (1134)
..+...-..+. .........++.+++. ..++.-++|||+++.. ...+.|+..+.....+.++|++|.+.
T Consensus 85 ~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 85 TEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred HHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence 00000000000 0000000111111111 1245568999999765 45777777776656667766555544
Q ss_pred -hhhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHH
Q 001161 335 -QVLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEV 394 (1134)
Q Consensus 335 -~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 394 (1134)
.+.... ..-..+.+..++.++..+.+.+.+-... .....+..+.|++.++|.|.-...
T Consensus 165 ~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg--i~~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 165 QKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG--IAHEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred HhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 443222 1235789999999999998887653222 122245567889999998864433
No 85
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.25 E-value=6.9e-06 Score=81.32 Aligned_cols=123 Identities=20% Similarity=0.196 Sum_probs=70.0
Q ss_pred cccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhc
Q 001161 195 VGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLN 274 (1134)
Q Consensus 195 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~ 274 (1134)
+|++..+.++...+... ..+.+.|+|.+|+|||++|+++++.+...-...+++. .................
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhhhHHHHHhhhh------
Confidence 47888888888887642 3467999999999999999999998753333344442 21111111000000000
Q ss_pred CCCCCCCccccHHHHHHhhcCCcceEEEecCCCh--H---HHHHHhcCcCCC---CCCcEEEEEeCChh
Q 001161 275 DGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP--R---QIKILVGRLDLL---ASGSRIIITTRDRQ 335 (1134)
Q Consensus 275 ~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~---~l~~l~~~~~~~---~~gsrIiiTTR~~~ 335 (1134)
............++.++|+||++.. + .+..+....... ..+.+||+||....
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111223456789999999864 2 233333332221 36788888888653
No 86
>PRK09087 hypothetical protein; Validated
Probab=98.24 E-value=2.7e-05 Score=82.70 Aligned_cols=141 Identities=11% Similarity=0.121 Sum_probs=86.1
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhc
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLT 294 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~ 294 (1134)
.+.+.|||+.|+|||+|+++++... ...|+.. ..+...+... +.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-----~~~~i~~----------~~~~~~~~~~---------------------~~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-----DALLIHP----------NEIGSDAANA---------------------AA 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-----CCEEecH----------HHcchHHHHh---------------------hh
Confidence 4668999999999999999888653 2224421 0111111111 11
Q ss_pred CCcceEEEecCCCh----HHHHHHhcCcCCCCCCcEEEEEeCC---------hhhhhhcCCCeEEEecCCCHHhHHHHHH
Q 001161 295 RKKVLIVFDDVNHP----RQIKILVGRLDLLASGSRIIITTRD---------RQVLANCGVDEVYQMKELVHDDALRLFS 361 (1134)
Q Consensus 295 ~k~~LlVLDdv~~~----~~l~~l~~~~~~~~~gsrIiiTTR~---------~~~~~~~~~~~~~~l~~L~~~ea~~Lf~ 361 (1134)
+ -+|++||++.. +.+-.+..... ..|..||+|++. +.+...+....++++++++.++-.+++.
T Consensus 88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 88 E--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred c--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 1 27888999542 22222222221 346779998873 2333334445789999999999999999
Q ss_pred HhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHHH
Q 001161 362 RHAFEGDHPHESHTELACKIIKYARGVPLALEVLGR 397 (1134)
Q Consensus 362 ~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~ 397 (1134)
+++-... ..-.++....|++.+.|..-++..+-.
T Consensus 164 ~~~~~~~--~~l~~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 164 KLFADRQ--LYVDPHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred HHHHHcC--CCCCHHHHHHHHHHhhhhHHHHHHHHH
Confidence 8874321 222356777888888877766664433
No 87
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.4e-05 Score=92.25 Aligned_cols=192 Identities=14% Similarity=0.123 Sum_probs=109.5
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCC---ceeeeeechhHhhcCCHHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFA---GSFFARNVREAEETGRLGDL 264 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~l 264 (1134)
|...+++||-+..+..|..++..+. -.+.+.++|+.|+||||+|+.+++.+...-. ..|... . ....+
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C----~----sC~~i 84 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC----T----SCLEI 84 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC----c----HHHHH
Confidence 4556789999999999998887543 2245899999999999999999986543210 011100 0 00000
Q ss_pred HHHHHHHHhc-CCCCCCCccccHHHHHHh-----hcCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeCC-hh
Q 001161 265 RQQLLSTLLN-DGNVKNFPNIDLNFQSKK-----LTRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTRD-RQ 335 (1134)
Q Consensus 265 ~~~ll~~l~~-~~~~~~~~~~~~~~l~~~-----L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR~-~~ 335 (1134)
.......+.. ........+. ++.+.+. ..++.-++|+|+++.. +.+++|+..+........+|++|.. ..
T Consensus 85 ~~g~~~dviEIdaas~~gVd~-IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~k 163 (484)
T PRK14956 85 TKGISSDVLEIDAASNRGIEN-IRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHK 163 (484)
T ss_pred HccCCccceeechhhcccHHH-HHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhh
Confidence 0000000000 0000000000 1111111 2345669999999754 4577777766554455665555544 33
Q ss_pred hhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHH
Q 001161 336 VLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLA 391 (1134)
Q Consensus 336 ~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 391 (1134)
+.... ..-..|.+.+++.++..+.+.+.+-... ..-..+....|++.++|.+--
T Consensus 164 I~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg--i~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 164 IPETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN--VQYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred ccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCChHHH
Confidence 33222 2235799999999999988887663322 222356678899999998743
No 88
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=2.9e-05 Score=87.51 Aligned_cols=177 Identities=16% Similarity=0.222 Sum_probs=110.3
Q ss_pred CCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhc------cCCceeeeeechhHhhcCCHHHHH
Q 001161 192 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISR------HFAGSFFARNVREAEETGRLGDLR 265 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~~~~~~~~~~~~~~l~ 265 (1134)
++++|.+...+.+...+..+ .-.+...++|+.|+||||+|++++..+-. +.+...|.. . ........++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~--~~~~i~v~~ir 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-I--NKKSIGVDDIR 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-c--cCCCCCHHHHH
Confidence 46789888899999888643 23456789999999999999999986532 222222221 0 11112222222
Q ss_pred HHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCC--ChHHHHHHhcCcCCCCCCcEEEEEeCChhhh-hh-cC
Q 001161 266 QQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVN--HPRQIKILVGRLDLLASGSRIIITTRDRQVL-AN-CG 341 (1134)
Q Consensus 266 ~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~--~~~~l~~l~~~~~~~~~gsrIiiTTR~~~~~-~~-~~ 341 (1134)
++...+... -..+++=++|+|+++ +...++.|...+....+++.+|++|.+.+.+ +. ..
T Consensus 80 -~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 80 -NIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred -HHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 222221110 011234456666654 5556888888887778889998888766432 22 12
Q ss_pred CCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHH
Q 001161 342 VDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVL 395 (1134)
Q Consensus 342 ~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 395 (1134)
....+++.+++.++....+.... .+ ...+.+..++.+++|.|..+...
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~-~~-----~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKY-ND-----IKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHh-cC-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 34688999999999988776643 11 11344678899999988655433
No 89
>PTZ00202 tuzin; Provisional
Probab=98.23 E-value=6.2e-06 Score=91.76 Aligned_cols=188 Identities=14% Similarity=0.134 Sum_probs=114.1
Q ss_pred cccccCCchh--HHHHHHHHHHHHhhccc------cCCCccCCccccchhHHHHHHhhccCC-CCeeEEEEEecCCChHH
Q 001161 159 GFDSRVYRTE--SALIEEIVNAILKRVDD------TFQSENEDLVGVRLPMKEIESLLRTGS-TNVYKLGIWGIGGIGKT 229 (1134)
Q Consensus 159 g~~~~~~~~e--~~~i~~i~~~v~~~l~~------~~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKT 229 (1134)
||.+++++.+ +-...-.++...+.+++ ..|.+...|+||+.++.+|...|...+ ...+++.|+|++|.|||
T Consensus 221 ~wn~r~y~rqQR~~Ql~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKT 300 (550)
T PTZ00202 221 GWNFKNYRTQQRSYQLKVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKS 300 (550)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHH
Confidence 4555554433 22344555666666554 247788999999999999999997533 33568999999999999
Q ss_pred HHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhh-----c-CCcceEEEe
Q 001161 230 TIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL-----T-RKKVLIVFD 303 (1134)
Q Consensus 230 tLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L-----~-~k~~LlVLD 303 (1134)
||++.+..... ...++.+.+ +..++++.++.+++..... ...+....+.+.+ . +++.+||+-
T Consensus 301 TLlR~~~~~l~----~~qL~vNpr------g~eElLr~LL~ALGV~p~~--~k~dLLrqIqeaLl~~~~e~GrtPVLII~ 368 (550)
T PTZ00202 301 SLCRSAVRKEG----MPAVFVDVR------GTEDTLRSVVKALGVPNVE--ACGDLLDFISEACRRAKKMNGETPLLVLK 368 (550)
T ss_pred HHHHHHHhcCC----ceEEEECCC------CHHHHHHHHHHHcCCCCcc--cHHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 99999986653 235554432 5678888888888753221 1122333333332 2 566666664
Q ss_pred cC--CChHH----HHHHhcCcCCCCCCcEEEEEeCChhhhhh---cCCCeEEEecCCCHHhHHHHHHH
Q 001161 304 DV--NHPRQ----IKILVGRLDLLASGSRIIITTRDRQVLAN---CGVDEVYQMKELVHDDALRLFSR 362 (1134)
Q Consensus 304 dv--~~~~~----l~~l~~~~~~~~~gsrIiiTTR~~~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~ 362 (1134)
== .+..- .-.|+.. ..-|+|++----+.+-.. ...-+.|.++.++.++|.++-..
T Consensus 369 lreg~~l~rvyne~v~la~d----rr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h 432 (550)
T PTZ00202 369 LREGSSLQRVYNEVVALACD----RRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQH 432 (550)
T ss_pred ecCCCcHHHHHHHHHHHHcc----chhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhh
Confidence 22 22221 1222222 345677765443332111 11235789999999999886554
No 90
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.22 E-value=1.9e-08 Score=115.41 Aligned_cols=178 Identities=21% Similarity=0.175 Sum_probs=89.7
Q ss_pred CCCCcCCCCCcEEEccCCCCCcccCCccC-cCcccEEEecCC---------CCCCCcccccC-CCcceeEecCcCccccC
Q 001161 651 PLSTQHLNKLAILNLSGCGNLQSLPDRIH-LELLKELNLSGC---------SKLKRLPEISS-GNIETMHLDGTALEELP 719 (1134)
Q Consensus 651 ~~~~~~l~~L~~L~L~~~~~~~~lp~~~~-l~~L~~L~Ls~~---------~~l~~~~~~~~-~~L~~L~L~~n~i~~lp 719 (1134)
|..+..+..|++|.|.+|++.. .-.... -..|++|...+. ...+++..... ..|...+.+.|.+..+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST-AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHH
Confidence 5567788899999999987654 111111 123444432221 00111111111 34556666666666666
Q ss_pred ccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCc-cccCCCCCcEEEccCCcCcccCccccCCCC
Q 001161 720 SSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPE-ELGYLEALDSLHAVGTAIRELPPSIVRLKS 798 (1134)
Q Consensus 720 ~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~-~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~ 798 (1134)
.++.-++.|+.|+|++|+....- .+..|+.|++|+|+.|.+.. +|. ....+ .|+.|.+.+|.++++ ..+.++++
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~L~~L~lrnN~l~tL-~gie~Lks 255 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-KLQLLNLRNNALTTL-RGIENLKS 255 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc-ccccchhhh-hheeeeecccHHHhh-hhHHhhhh
Confidence 66666677777777776654432 35556666666666665432 222 11122 266666666665554 23455555
Q ss_pred CCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCC
Q 001161 799 VRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGI 834 (1134)
Q Consensus 799 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l 834 (1134)
|+.||+++|-+.....-..+..+..|+.|+|.+|.+
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 555555555421111112233344455555555544
No 91
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.22 E-value=4e-05 Score=81.17 Aligned_cols=162 Identities=17% Similarity=0.212 Sum_probs=91.5
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHhccCC--ceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHH
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKISRHFA--GSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQS 290 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~ 290 (1134)
.....+.|+|..|.|||.|.+++++.+....+ .++|+. ..+....+...+.. .....++
T Consensus 32 ~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~~~~~~~~~---------~~~~~~~ 92 (219)
T PF00308_consen 32 ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIREFADALRD---------GEIEEFK 92 (219)
T ss_dssp TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHHHHHHHHHT---------TSHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHHHHHHHHHc---------ccchhhh
Confidence 34556899999999999999999998776544 244442 12333333333322 1134455
Q ss_pred HhhcCCcceEEEecCCChHH---H-HHHhcCcCC-CCCCcEEEEEeCCh-hh--------hhhcCCCeEEEecCCCHHhH
Q 001161 291 KKLTRKKVLIVFDDVNHPRQ---I-KILVGRLDL-LASGSRIIITTRDR-QV--------LANCGVDEVYQMKELVHDDA 356 (1134)
Q Consensus 291 ~~L~~k~~LlVLDdv~~~~~---l-~~l~~~~~~-~~~gsrIiiTTR~~-~~--------~~~~~~~~~~~l~~L~~~ea 356 (1134)
+.++ .-=+|++||++.... + +.+...++. ...|.+||+|++.. .- .......-++++++++.++.
T Consensus 93 ~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r 171 (219)
T PF00308_consen 93 DRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDR 171 (219)
T ss_dssp HHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHH
T ss_pred hhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHH
Confidence 5555 344888999965421 2 222222111 13567899999544 21 22223446899999999999
Q ss_pred HHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHH
Q 001161 357 LRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLG 396 (1134)
Q Consensus 357 ~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 396 (1134)
.+++.+.+-...- .-.++.+..+++.+.+..-.|..+-
T Consensus 172 ~~il~~~a~~~~~--~l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 172 RRILQKKAKERGI--ELPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp HHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CCcHHHHHHHHHhhcCCHHHHHHHH
Confidence 9999988843222 2235666677777766555444433
No 92
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.22 E-value=1e-08 Score=111.17 Aligned_cols=129 Identities=16% Similarity=0.153 Sum_probs=58.8
Q ss_pred CCCCCEEEecCCCCCCCCcccc-cCCCCCCCEEeccCCC-CCCC--ccccccccCcceeecCCCCcc---ccccchhCCC
Q 001161 796 LKSVRAIYFGRNRGLSLPITFS-VDGLQNLRDLNLNDCG-ITEL--PESLGLLSLVTELHLEGNNFE---RIPESIIQLS 868 (1134)
Q Consensus 796 l~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~Ls~n~-l~~l--p~~l~~l~~L~~L~Ls~n~l~---~lp~~l~~l~ 868 (1134)
+..|+.|+.+++...+...-.. -.+.++|+.|-++.|+ ++.. ..--.+.+.|+.+++.++... ++-..-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 4455555555443222211111 1344566666666663 3321 111234566667766666433 2322234566
Q ss_pred CCcEEEeccccCCCccC--------CcCCCcCeEeccCCcccccccCCCCCCCCccceeeeccCC
Q 001161 869 NLEWLFIRYCERLQSLP--------KLPCNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDN 925 (1134)
Q Consensus 869 ~L~~L~Ls~n~~l~~lp--------~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n 925 (1134)
.|+.|.|++|....... .....|..|.+++|+.+.... .-....+++|+.+++-.|
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~-Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT-LEHLSICRNLERIELIDC 436 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH-HHHHhhCcccceeeeech
Confidence 77777777766544331 122345555555555443221 001123444555554444
No 93
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5.7e-08 Score=100.65 Aligned_cols=170 Identities=25% Similarity=0.311 Sum_probs=98.2
Q ss_pred ceEeeCCCCCcc--ccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCcc---CcCcccE
Q 001161 611 LVLLEMPYSNIE--QLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRI---HLELLKE 685 (1134)
Q Consensus 611 L~~L~L~~n~i~--~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~---~l~~L~~ 685 (1134)
|++|||++..|+ ++...+.++.+|+.|.+.++..-..+ ...+..-.+|+.|+|+.|+-.+...-.. +++.|..
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I--~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPI--VNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHH--HHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 555555555554 23344556666666666665432221 2344555666667776665544332221 4666777
Q ss_pred EEecCCCCCCCccc----ccCCCcceeEecCcCc----cccCccccCCCCCCeeeccCCcCCcc-cCcccCCCCCCcEEe
Q 001161 686 LNLSGCSKLKRLPE----ISSGNIETMHLDGTAL----EELPSSIECLSKLSRLDLADCKSLKS-LPSGLCKLKSLDVLN 756 (1134)
Q Consensus 686 L~Ls~~~~l~~~~~----~~~~~L~~L~L~~n~i----~~lp~~~~~l~~L~~L~L~~n~~~~~-lp~~l~~l~~L~~L~ 756 (1134)
|+|+.|......-. -...+|..|+|+|+.= ..+..-...+++|.+|||++|..+.. .-..|.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 77777654443211 1125666666665421 12323356789999999999876543 223466889999999
Q ss_pred ecCCCCCCCCCc---cccCCCCCcEEEccCC
Q 001161 757 IDGCSNLQRLPE---ELGYLEALDSLHAVGT 784 (1134)
Q Consensus 757 L~~~~~~~~~p~---~~~~l~~L~~L~L~~n 784 (1134)
++.|.. .+|+ .+..+++|.+|+..++
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 999863 3443 3456677777776654
No 94
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.20 E-value=1.6e-06 Score=71.40 Aligned_cols=58 Identities=28% Similarity=0.484 Sum_probs=43.7
Q ss_pred CcceeEecCcCccccCc-cccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCC
Q 001161 704 NIETMHLDGTALEELPS-SIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCS 761 (1134)
Q Consensus 704 ~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~ 761 (1134)
+|++|++++|.++.+|. .|.++++|++|++++|.+...-|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 56777777777777775 47778888888888887766666677788888888887775
No 95
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=4.1e-05 Score=90.88 Aligned_cols=183 Identities=15% Similarity=0.135 Sum_probs=109.7
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccC---------------------Cce
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF---------------------AGS 246 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~ 246 (1134)
|...+++||-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+.... ...
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 455678999999999999888643 2235578999999999999999998653211 111
Q ss_pred eeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHH-hhcCCcceEEEecCCCh--HHHHHHhcCcCCCCC
Q 001161 247 FFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSK-KLTRKKVLIVFDDVNHP--RQIKILVGRLDLLAS 323 (1134)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~ 323 (1134)
..+. .....++.++ ++++.. +.. -..+++-++|+|+++.. ...+.|+..+.....
T Consensus 91 ieid----aas~~gvd~i-r~ii~~-----------------~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~ 148 (546)
T PRK14957 91 IEID----AASRTGVEET-KEILDN-----------------IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPE 148 (546)
T ss_pred EEee----cccccCHHHH-HHHHHH-----------------HHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCC
Confidence 1110 0011111111 111111 111 12345669999999754 446677766665556
Q ss_pred CcEEEEEeCCh-hhhhh-cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChH-HHHHH
Q 001161 324 GSRIIITTRDR-QVLAN-CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPL-ALEVL 395 (1134)
Q Consensus 324 gsrIiiTTR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 395 (1134)
.+.+|++|.+. .+... .....++++.+++.++..+.+.+.+-+.. .....+....|++.++|-+- |+..+
T Consensus 149 ~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 149 YVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred CceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 67666555443 33322 22346899999999998888777553221 12234566788889998664 44333
No 96
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.19 E-value=1.4e-07 Score=108.46 Aligned_cols=127 Identities=26% Similarity=0.343 Sum_probs=99.3
Q ss_pred CCCCEEeccCCCCCCCccccccccCcceeecCCCCccccccchhCCCCCcEEEeccccCCCccCCc---CCCcCeEeccC
Q 001161 822 QNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPESIIQLSNLEWLFIRYCERLQSLPKL---PCNLIWLDAHH 898 (1134)
Q Consensus 822 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp~~---~~~L~~L~l~~ 898 (1134)
..|...+.+.|.++.+..++.-++.|+.|+|++|+++... .+..|+.|++|||++|.+ ..+|.+ -+.|+.|.++|
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L-~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCL-RHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchh-ccccccchhhhhheeeeecc
Confidence 3577788888999888888889999999999999999886 888999999999999874 345532 34699999998
Q ss_pred CcccccccCCCCCCCCccceeeeccCCCCCCccccccchHHHHHHhHHHHHHhHHhhhhcC
Q 001161 899 CTALESLPGLFPSSNESYLRTLYLSDNFKLDPNDLGGIVKGALQKIQLLATARLKEAREKI 959 (1134)
Q Consensus 899 c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 959 (1134)
| .++.+.|. .++.+|+.||+++|+-...-.+ ..+..+..|..|.|.+|.+..
T Consensus 242 N-~l~tL~gi---e~LksL~~LDlsyNll~~hseL-----~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 242 N-ALTTLRGI---ENLKSLYGLDLSYNLLSEHSEL-----EPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred c-HHHhhhhH---HhhhhhhccchhHhhhhcchhh-----hHHHHHHHHHHHhhcCCcccc
Confidence 5 45555544 5888999999999954433333 356778889999999998753
No 97
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=3.5e-05 Score=88.33 Aligned_cols=178 Identities=13% Similarity=0.135 Sum_probs=106.2
Q ss_pred cCCccccchhHHHHHHhhccCCC--------CeeEEEEEecCCChHHHHHHHHHHHHhccCC------------------
Q 001161 191 NEDLVGVRLPMKEIESLLRTGST--------NVYKLGIWGIGGIGKTTIAGAIFSKISRHFA------------------ 244 (1134)
Q Consensus 191 ~~~~vGr~~~~~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~------------------ 244 (1134)
.++++|-+..++.|...+..+.. -.+.+.++|++|+|||++|+.++..+-....
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 34688999989999888875431 2466889999999999999999886532211
Q ss_pred --ceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH--HHHHHhcCcCC
Q 001161 245 --GSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR--QIKILVGRLDL 320 (1134)
Q Consensus 245 --~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~l~~l~~~~~~ 320 (1134)
...++. ......++.++ +++...+... -..+++-++|+|+++... ....|...+..
T Consensus 84 hpD~~~i~---~~~~~i~i~~i-R~l~~~~~~~----------------p~~~~~kViiIDead~m~~~aanaLLk~LEe 143 (394)
T PRK07940 84 HPDVRVVA---PEGLSIGVDEV-RELVTIAARR----------------PSTGRWRIVVIEDADRLTERAANALLKAVEE 143 (394)
T ss_pred CCCEEEec---cccccCCHHHH-HHHHHHHHhC----------------cccCCcEEEEEechhhcCHHHHHHHHHHhhc
Confidence 111110 00000111111 1111111000 012344478889997653 34556665555
Q ss_pred CCCCcEEEEEeCCh-hhhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHH
Q 001161 321 LASGSRIIITTRDR-QVLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVL 395 (1134)
Q Consensus 321 ~~~gsrIiiTTR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 395 (1134)
..++..+|++|.+. .+.... .....+.+++++.++..+.+.... + . ..+.+..++..++|.|.....+
T Consensus 144 p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~--~--~---~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 144 PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD--G--V---DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc--C--C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 56677777766654 334332 234688999999999998887532 1 1 1455778899999999755444
No 98
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=1.7e-05 Score=94.79 Aligned_cols=195 Identities=15% Similarity=0.086 Sum_probs=108.9
Q ss_pred CCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHH
Q 001161 187 FQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQ 266 (1134)
Q Consensus 187 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 266 (1134)
.|...+++||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+...-.. ....+..+. ...
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~-~~~pCg~C~--------sCr 80 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQ-HGEPCGVCQ--------SCT 80 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCC-CCCCCcccH--------HHH
Confidence 35566789999999999999987532 23568999999999999999998865321100 000000000 000
Q ss_pred HHHHHHhcCC-CCCCCccccHHHHHHh--------hcCCcceEEEecCCChHH--HHHHhcCcCCCCCCcEEEEEeCChh
Q 001161 267 QLLSTLLNDG-NVKNFPNIDLNFQSKK--------LTRKKVLIVFDDVNHPRQ--IKILVGRLDLLASGSRIIITTRDRQ 335 (1134)
Q Consensus 267 ~ll~~l~~~~-~~~~~~~~~~~~l~~~--------L~~k~~LlVLDdv~~~~~--l~~l~~~~~~~~~gsrIiiTTR~~~ 335 (1134)
.+...-..+. .........++.+++. ..+++-++|+|+++.... ...|+..+.......++|++|.+..
T Consensus 81 ~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~ 160 (709)
T PRK08691 81 QIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPH 160 (709)
T ss_pred HHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 0000000000 0000000111112111 124556899999976543 4555555544456677777775543
Q ss_pred -hhhh-cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHH
Q 001161 336 -VLAN-CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALE 393 (1134)
Q Consensus 336 -~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 393 (1134)
+... .+....+.+..++.++..+.+.+.+-+... .-..+.+..|++.++|.+.-+.
T Consensus 161 kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi--~id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 161 KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI--AYEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHhCCCHHHHH
Confidence 2211 122246788899999999988876633221 2234567889999999875443
No 99
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=2.2e-05 Score=94.43 Aligned_cols=195 Identities=13% Similarity=0.073 Sum_probs=111.8
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQ 267 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 267 (1134)
|...+++||-+..++.|...+..+. -.+.+.++|..|+||||+|+.+++.+-..... . ....+.-...++
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~---~------~~pCg~C~~C~~ 81 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI---T------ATPCGECDNCRE 81 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC---C------CCCCCCCHHHHH
Confidence 4566789999999999999887542 23557899999999999999999865332100 0 000000011111
Q ss_pred HHHHHhc-----CCCCCCCccccHHHHHHh-----hcCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeCCh-
Q 001161 268 LLSTLLN-----DGNVKNFPNIDLNFQSKK-----LTRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTRDR- 334 (1134)
Q Consensus 268 ll~~l~~-----~~~~~~~~~~~~~~l~~~-----L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR~~- 334 (1134)
+...-.. +.......++ ++.+.+. ..+++-++|+|+++.. ...+.|+..+....+..++|++|.+.
T Consensus 82 i~~g~~~D~ieidaas~~~Vdd-iR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~ 160 (647)
T PRK07994 82 IEQGRFVDLIEIDAASRTKVED-TRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (647)
T ss_pred HHcCCCCCceeecccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcc
Confidence 1000000 0000000011 1111111 2345669999999754 45677766666556667766655554
Q ss_pred hhhhh-cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHH
Q 001161 335 QVLAN-CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVL 395 (1134)
Q Consensus 335 ~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 395 (1134)
.+... ......|.+.+++.++..+.+.+.+-... .....+....|++.++|.+--+..+
T Consensus 161 kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~--i~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 161 KLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ--IPFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred ccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 33322 22346899999999999998887653221 1222455678999999977644333
No 100
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=2.6e-05 Score=91.68 Aligned_cols=186 Identities=18% Similarity=0.183 Sum_probs=107.5
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc----CC-----------------ce
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH----FA-----------------GS 246 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~-----------------~~ 246 (1134)
|...+++||.+...+.|...+..+. -.+.+.++|++|+||||+|+.+++.+... +. ..
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 4556789999988888888776432 23557899999999999999999865321 10 00
Q ss_pred eeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh--HHHHHHhcCcCCCCCC
Q 001161 247 FFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP--RQIKILVGRLDLLASG 324 (1134)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~g 324 (1134)
..+. .+...++..+. ++...... .-..+++-++|+|+++.. ++.+.|...+......
T Consensus 89 ~el~----aa~~~gid~iR-~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~ 147 (472)
T PRK14962 89 IELD----AASNRGIDEIR-KIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSH 147 (472)
T ss_pred EEEe----CcccCCHHHHH-HHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCc
Confidence 1110 00011111111 11111000 012245669999999765 3456666655544444
Q ss_pred cEEEEEeCC-hhhhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCC-hHHHHHHHH
Q 001161 325 SRIIITTRD-RQVLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGV-PLALEVLGR 397 (1134)
Q Consensus 325 srIiiTTR~-~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~g~ 397 (1134)
..+|++|.+ ..+.... .....+++.+++.++....+...+..... .-..+.+..|+++++|- +.|+..+..
T Consensus 148 vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 148 VVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred EEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 555545443 3332222 23468899999999998888887643221 22245677888877654 566655544
No 101
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.17 E-value=4.7e-08 Score=106.15 Aligned_cols=70 Identities=20% Similarity=0.274 Sum_probs=42.1
Q ss_pred hhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCc-c--CcCcccEEEecCCCCCCC
Q 001161 627 IVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDR-I--HLELLKELNLSGCSKLKR 696 (1134)
Q Consensus 627 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-~--~l~~L~~L~Ls~~~~l~~ 696 (1134)
...+++++.+|.+.++.+++.......-..+++|++|+|..|..++...-. + ++++|++|+++.|+.+..
T Consensus 159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc
Confidence 345566667777777665554332222345677777777776655543221 1 577888888888865543
No 102
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.17 E-value=5.7e-06 Score=88.30 Aligned_cols=150 Identities=23% Similarity=0.360 Sum_probs=89.0
Q ss_pred CccCCccccchhHHH---HHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHH
Q 001161 189 SENEDLVGVRLPMKE---IESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLR 265 (1134)
Q Consensus 189 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 265 (1134)
...++.||.+..+-+ |.+++. .+...-+.+||++|.||||||+.++..-+.+ ...|+.-........++..+.
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ie--q~~ipSmIlWGppG~GKTtlArlia~tsk~~--SyrfvelSAt~a~t~dvR~if 210 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLIE--QNRIPSMILWGPPGTGKTTLARLIASTSKKH--SYRFVELSATNAKTNDVRDIF 210 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHHH--cCCCCceEEecCCCCchHHHHHHHHhhcCCC--ceEEEEEeccccchHHHHHHH
Confidence 334556666544433 333333 3567778999999999999999998754333 134443221112222232322
Q ss_pred HHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCC--hHHHHHHhcCcCCCCCCcEEEE--EeCChhh---hh
Q 001161 266 QQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNH--PRQIKILVGRLDLLASGSRIII--TTRDRQV---LA 338 (1134)
Q Consensus 266 ~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIii--TTR~~~~---~~ 338 (1134)
++.- -...+.++|.+|.+|.|.. ..|-+.+++. ...|.-++| ||.++.. ..
T Consensus 211 e~aq-------------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~---VE~G~I~lIGATTENPSFqln~a 268 (554)
T KOG2028|consen 211 EQAQ-------------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPH---VENGDITLIGATTENPSFQLNAA 268 (554)
T ss_pred HHHH-------------------HHHhhhcceeEEEeHHhhhhhhhhhhcccce---eccCceEEEecccCCCccchhHH
Confidence 2211 1133567899999999954 4455555544 346766665 6766633 11
Q ss_pred hcCCCeEEEecCCCHHhHHHHHHHhh
Q 001161 339 NCGVDEVYQMKELVHDDALRLFSRHA 364 (1134)
Q Consensus 339 ~~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1134)
....-.++.+++|+.++...++.+..
T Consensus 269 LlSRC~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 269 LLSRCRVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred HHhccceeEeccCCHHHHHHHHHHHH
Confidence 12234688999999999999988733
No 103
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=4.5e-05 Score=89.99 Aligned_cols=185 Identities=17% Similarity=0.186 Sum_probs=110.3
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCC-------ceeeeee-chhH----
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFA-------GSFFARN-VREA---- 255 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-------~~~~~~~-~~~~---- 255 (1134)
|....++||-+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+-..-. ..|.... -...
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 4556789999999999988775432 2357899999999999999999986632110 0011000 0000
Q ss_pred ---------hhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh--HHHHHHhcCcCCCCCC
Q 001161 256 ---------EETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP--RQIKILVGRLDLLASG 324 (1134)
Q Consensus 256 ---------~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~g 324 (1134)
....+..++. +++.... ..-+.+++-++|+|+++.. ..++.|...+....+.
T Consensus 96 h~Dv~eidaas~~~vd~Ir-~iie~a~----------------~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~ 158 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIR-RIIESAE----------------YKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPH 158 (507)
T ss_pred CCcEEEeeccCCCCHHHHH-HHHHHHH----------------hccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCC
Confidence 0001111111 1111100 0012345668999999864 4477777666655566
Q ss_pred cEEEE-EeCChhhhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHH
Q 001161 325 SRIII-TTRDRQVLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLAL 392 (1134)
Q Consensus 325 srIii-TTR~~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 392 (1134)
+.+|+ ||+...+.... .....+++.+++.++..+.+...+-.... ....+.+..|++.++|.+--+
T Consensus 159 ~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi--~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 159 IIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL--KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred EEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 66654 44544444332 23357899999999999999887743221 222456677899999976443
No 104
>PRK05642 DNA replication initiation factor; Validated
Probab=98.15 E-value=5.8e-05 Score=80.96 Aligned_cols=151 Identities=18% Similarity=0.223 Sum_probs=90.0
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcC
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTR 295 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~ 295 (1134)
..+.|+|..|+|||.||+++++.+..+-..++|+... ++... ...+.+.+++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~----------~~~~~------------------~~~~~~~~~~ 97 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA----------ELLDR------------------GPELLDNLEQ 97 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH----------HHHhh------------------hHHHHHhhhh
Confidence 5689999999999999999998776554556666311 11110 0112223332
Q ss_pred CcceEEEecCCCh---HHHH-HHhcCcCC-CCCCcEEEEEeCChh-h--------hhhcCCCeEEEecCCCHHhHHHHHH
Q 001161 296 KKVLIVFDDVNHP---RQIK-ILVGRLDL-LASGSRIIITTRDRQ-V--------LANCGVDEVYQMKELVHDDALRLFS 361 (1134)
Q Consensus 296 k~~LlVLDdv~~~---~~l~-~l~~~~~~-~~~gsrIiiTTR~~~-~--------~~~~~~~~~~~l~~L~~~ea~~Lf~ 361 (1134)
-. ++|+||+... .+++ .+...++. ...|.+||+|++... - ....+...++++++++.++-.+++.
T Consensus 98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 22 6889999632 2332 23333221 134677888887431 1 1122233678999999999999998
Q ss_pred HhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHHH
Q 001161 362 RHAFEGDHPHESHTELACKIIKYARGVPLALEVLGR 397 (1134)
Q Consensus 362 ~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~ 397 (1134)
.++.... ..-..+....+++++.|-.-++..+-.
T Consensus 177 ~ka~~~~--~~l~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 177 LRASRRG--LHLTDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHHHcC--CCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 6664322 112256677778877776655554443
No 105
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.14 E-value=1.1e-05 Score=90.82 Aligned_cols=112 Identities=23% Similarity=0.433 Sum_probs=60.5
Q ss_pred CCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCc---ccCccccCCCCCCEE
Q 001161 726 SKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIR---ELPPSIVRLKSVRAI 802 (1134)
Q Consensus 726 ~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~---~lp~~~~~l~~L~~L 802 (1134)
.+|+.|.+++|..+..+|..+ .++|++|++++|..+..+|. +|+.|++.++... .+|. +|+.|
T Consensus 72 ~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n~~~~L~~LPs------sLk~L 137 (426)
T PRK15386 72 NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIKGSATDSIKNVPN------GLTSL 137 (426)
T ss_pred CCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeCCCCCcccccCcc------hHhhe
Confidence 357788888877777777644 35788888888865555554 4677777766543 4444 35556
Q ss_pred EecCCCCCCC-CcccccCCCCCCCEEeccCCCCCCCccccccccCcceeecCCC
Q 001161 803 YFGRNRGLSL-PITFSVDGLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGN 855 (1134)
Q Consensus 803 ~l~~n~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n 855 (1134)
.+.+++.... ..+. .-.++|++|++++|....+|..+. .+|+.|.++.|
T Consensus 138 ~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 138 SINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred ecccccccccccccc--ccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 6543220000 0000 011356666666555444443221 35555555443
No 106
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.14 E-value=5.2e-05 Score=87.64 Aligned_cols=185 Identities=15% Similarity=0.149 Sum_probs=111.9
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc----CCc-----------------e
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH----FAG-----------------S 246 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~~-----------------~ 246 (1134)
|...++++|.+..++.+.+.+..+. -.+.+.++|++|+||||+|+.++..+... +.. .
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 4556778999999999999886432 23567899999999999999999876422 110 0
Q ss_pred eeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh--HHHHHHhcCcCCCCCC
Q 001161 247 FFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP--RQIKILVGRLDLLASG 324 (1134)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~g 324 (1134)
.++.. .......+ .+++...+... -..+++-++|+|+++.. .....+...+....+.
T Consensus 89 ~~~~~----~~~~~~~~-~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~ 147 (355)
T TIGR02397 89 IEIDA----ASNNGVDD-IREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH 147 (355)
T ss_pred EEeec----cccCCHHH-HHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccc
Confidence 11100 00001111 11121111100 01234458899998655 4466666665554566
Q ss_pred cEEEEEeCChh-hhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHH
Q 001161 325 SRIIITTRDRQ-VLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLG 396 (1134)
Q Consensus 325 srIiiTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 396 (1134)
+.+|++|.+.. +.... .....+++.+++.++..+.+...+-.... .-..+.+..+++.++|.|..+....
T Consensus 148 ~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~--~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 148 VVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI--KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 77777765554 22221 22357889999999999888876643221 1224677888999999887665544
No 107
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.13 E-value=4.9e-05 Score=87.93 Aligned_cols=172 Identities=16% Similarity=0.226 Sum_probs=98.5
Q ss_pred ccCCccccchhHHHHHHhhcc-----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhc
Q 001161 190 ENEDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEET 258 (1134)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 258 (1134)
..+++.|++..++++.+.+.. +-...+-|.++|++|.|||++|++++++....|- .+ ...
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i---~v-~~~----- 199 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI---RV-VGS----- 199 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEE---Ee-ehH-----
Confidence 445789999999999886632 1133456899999999999999999987654321 11 000
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHh-hcCCcceEEEecCCCh-------------HH---HHHHhcCcCCC
Q 001161 259 GRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKK-LTRKKVLIVFDDVNHP-------------RQ---IKILVGRLDLL 321 (1134)
Q Consensus 259 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVLDdv~~~-------------~~---l~~l~~~~~~~ 321 (1134)
.+.... .+. .......+.+. -...+.+|+|||++.. +. +..+...+...
T Consensus 200 ----~l~~~~----~g~------~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 265 (389)
T PRK03992 200 ----ELVQKF----IGE------GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF 265 (389)
T ss_pred ----HHhHhh----ccc------hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc
Confidence 111000 000 00011111111 1346789999999754 11 22233222221
Q ss_pred --CCCcEEEEEeCChhhhhhc-----CCCeEEEecCCCHHhHHHHHHHhhcCCCCCC-ccHHHHHHHHHHHhcCC
Q 001161 322 --ASGSRIIITTRDRQVLANC-----GVDEVYQMKELVHDDALRLFSRHAFEGDHPH-ESHTELACKIIKYARGV 388 (1134)
Q Consensus 322 --~~gsrIiiTTR~~~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~Gl 388 (1134)
..+.+||.||.....+... ..+..++++..+.++..++|..+..+..... .. ...+++.+.|.
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 2356778788765432221 2356799999999999999998875433221 22 34455566554
No 108
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=4e-05 Score=86.67 Aligned_cols=197 Identities=17% Similarity=0.155 Sum_probs=114.6
Q ss_pred CCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc----CCceeeeeechhHhhcCCHH
Q 001161 187 FQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH----FAGSFFARNVREAEETGRLG 262 (1134)
Q Consensus 187 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~ 262 (1134)
.|.....++|-+...+.+...+..+. -.+.+.|+|+.|+||||+|+.+++.+-.. +...... ...+-.
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~-------~~~~~c 89 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA-------DPDPAS 89 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC-------CCCCCC
Confidence 45677889999999999999987542 34568999999999999999999876431 1100000 000001
Q ss_pred HHHHHHHHH-------Hhc---CCC----CCCCccccHHHHHHhh-----cCCcceEEEecCCChH--HHHHHhcCcCCC
Q 001161 263 DLRQQLLST-------LLN---DGN----VKNFPNIDLNFQSKKL-----TRKKVLIVFDDVNHPR--QIKILVGRLDLL 321 (1134)
Q Consensus 263 ~l~~~ll~~-------l~~---~~~----~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~~--~l~~l~~~~~~~ 321 (1134)
...+.+... +.. .+. .....++ +..+.+.+ .+++-++|+|+++... ..+.|+..+...
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp 168 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP 168 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC
Confidence 111222111 000 000 0001111 22233333 2456689999997654 355666555544
Q ss_pred CCCcEEEEEe-CChhhhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHH
Q 001161 322 ASGSRIIITT-RDRQVLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLG 396 (1134)
Q Consensus 322 ~~gsrIiiTT-R~~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 396 (1134)
.....+|++| +...++... .....+.+.+++.++..+++...+... . -..+.+..+++.++|.|.....+.
T Consensus 169 p~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~---~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 169 PARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ---G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc---C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4555555444 443443322 223589999999999999998743211 1 224557789999999998665544
No 109
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=4.5e-05 Score=89.16 Aligned_cols=181 Identities=16% Similarity=0.186 Sum_probs=110.4
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccC---------------------Cce
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF---------------------AGS 246 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~ 246 (1134)
|...+++||-+..++.|...+..+. -.+.+.++|+.|+||||+|+.++..+-... ..+
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 4566789999999999988886442 235789999999999999999987542111 111
Q ss_pred eeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh--HHHHHHhcCcCCCCCC
Q 001161 247 FFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP--RQIKILVGRLDLLASG 324 (1134)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~g 324 (1134)
..+.. +...+..++. +++..... .-...++-++|+|+++.. ...+.|...+....+.
T Consensus 88 ~eida----as~~~vddIR-~Iie~~~~----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~ 146 (491)
T PRK14964 88 IEIDA----ASNTSVDDIK-VILENSCY----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPH 146 (491)
T ss_pred EEEec----ccCCCHHHHH-HHHHHHHh----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCC
Confidence 11110 1111222211 11111100 001234558999999754 3466676666655677
Q ss_pred cEEEEEeCC-hhhhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHH
Q 001161 325 SRIIITTRD-RQVLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLAL 392 (1134)
Q Consensus 325 srIiiTTR~-~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 392 (1134)
+++|++|.. ..+.... .....+++.+++.++..+.+.+.+.+... .-..+.+..|++.++|.+-.+
T Consensus 147 v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi--~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 147 VKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI--EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred eEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 777766643 3443322 23467899999999999988887743221 223556778899999877543
No 110
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.11 E-value=4.5e-05 Score=93.94 Aligned_cols=173 Identities=21% Similarity=0.332 Sum_probs=101.4
Q ss_pred CCccCCccccchhHH---HHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHH
Q 001161 188 QSENEDLVGVRLPMK---EIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDL 264 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 264 (1134)
|...++++|.+..+. .+.+.+.. .....+.++|++|+||||+|+.+++.....|. .+.. . ..++.++
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna---~--~~~i~di 93 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNA---V--LAGVKDL 93 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehh---h--hhhhHHH
Confidence 445567899988774 46666653 34556889999999999999999987665542 1211 0 0111111
Q ss_pred HHHHHHHHhcCCCCCCCccccHHHHHHhh--cCCcceEEEecCCC--hHHHHHHhcCcCCCCCCcEEEEE--eCChh--h
Q 001161 265 RQQLLSTLLNDGNVKNFPNIDLNFQSKKL--TRKKVLIVFDDVNH--PRQIKILVGRLDLLASGSRIIIT--TRDRQ--V 336 (1134)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIiiT--TR~~~--~ 336 (1134)
++.+. ...+.+ .+++.++||||++. ..+.+.+...+ ..|..++|+ |.+.. +
T Consensus 94 -r~~i~-----------------~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l 152 (725)
T PRK13341 94 -RAEVD-----------------RAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEV 152 (725)
T ss_pred -HHHHH-----------------HHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhh
Confidence 11111 111111 24567999999964 44566666543 345555553 34331 1
Q ss_pred hhh-cCCCeEEEecCCCHHhHHHHHHHhhcC-----CCCCCccHHHHHHHHHHHhcCChHH
Q 001161 337 LAN-CGVDEVYQMKELVHDDALRLFSRHAFE-----GDHPHESHTELACKIIKYARGVPLA 391 (1134)
Q Consensus 337 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~-----~~~~~~~~~~~~~~i~~~~~GlPLa 391 (1134)
... .....++++++|+.++...++.+.+-. +.....-..+....|++++.|..-.
T Consensus 153 ~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 153 NKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARS 213 (725)
T ss_pred hhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHH
Confidence 111 112357899999999999998876531 0111222355667888888886443
No 111
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=4.3e-05 Score=90.60 Aligned_cols=192 Identities=16% Similarity=0.088 Sum_probs=105.9
Q ss_pred CCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHH
Q 001161 187 FQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQ 266 (1134)
Q Consensus 187 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 266 (1134)
.|....+++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++.+...- |... ...+-....+
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~~-----~~Cg~C~sCr 80 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKDG-----DCCNSCSVCE 80 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCCC-----CCCcccHHHH
Confidence 35567789999999999999886432 236788999999999999999998763211 1000 0000000001
Q ss_pred HHHHHHhcCCCC-CCCccccHHHHH---Hhh-----cCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeC-Ch
Q 001161 267 QLLSTLLNDGNV-KNFPNIDLNFQS---KKL-----TRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTR-DR 334 (1134)
Q Consensus 267 ~ll~~l~~~~~~-~~~~~~~~~~l~---~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR-~~ 334 (1134)
++......+-.. ......+.+.++ +.. ..++=++|+|+++.. .....|...+....+...+|++|. ..
T Consensus 81 ~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~ 160 (605)
T PRK05896 81 SINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQ 160 (605)
T ss_pred HHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChH
Confidence 110000000000 000001111111 111 123336999999764 445666665544455666665554 33
Q ss_pred hhhhh-cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChH
Q 001161 335 QVLAN-CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPL 390 (1134)
Q Consensus 335 ~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 390 (1134)
.+... ......+++.+++.++....+...+-.... .-..+.+..+++.++|.+-
T Consensus 161 KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi--~Is~eal~~La~lS~GdlR 215 (605)
T PRK05896 161 KIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI--KIEDNAIDKIADLADGSLR 215 (605)
T ss_pred hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHH
Confidence 33322 223457899999999999888876633221 1224567788899998664
No 112
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.10 E-value=5.3e-05 Score=81.40 Aligned_cols=172 Identities=13% Similarity=0.176 Sum_probs=97.0
Q ss_pred CCcc-ccch-hHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHH
Q 001161 192 EDLV-GVRL-PMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLL 269 (1134)
Q Consensus 192 ~~~v-Gr~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll 269 (1134)
++|+ |-.. .+..+..+... ...+.+.|+|++|+|||+||+++++....+-..+.|+... ... ... .+
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~-~~~--~~~----~~-- 90 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD-KRA--WFV----PE-- 90 (235)
T ss_pred cccccCccHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH-HHh--hhh----HH--
Confidence 3444 6322 33444444332 2346789999999999999999998776554445555211 100 000 01
Q ss_pred HHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh---HHHH-HHhcCcCCC-CCC-cEEEEEeCCh---------
Q 001161 270 STLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP---RQIK-ILVGRLDLL-ASG-SRIIITTRDR--------- 334 (1134)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~---~~l~-~l~~~~~~~-~~g-srIiiTTR~~--------- 334 (1134)
+.+.+. +--+|++||+... .+|+ .+...+... ..| .++|+||+..
T Consensus 91 -------------------~~~~~~-~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~ 150 (235)
T PRK08084 91 -------------------VLEGME-QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLP 150 (235)
T ss_pred -------------------HHHHhh-hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccH
Confidence 111111 1248899999653 2232 121111111 123 4789998754
Q ss_pred hhhhhcCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHH
Q 001161 335 QVLANCGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLG 396 (1134)
Q Consensus 335 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 396 (1134)
.+...+....++++++++.++-.+++.+++.... ..-.++...-+++.+.|..-++..+-
T Consensus 151 ~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 151 DLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG--FELPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHHHH
Confidence 2233334446899999999999999887664321 22235677778888877665554443
No 113
>PF14516 AAA_35: AAA-like domain
Probab=98.10 E-value=0.00049 Score=77.94 Aligned_cols=206 Identities=10% Similarity=0.133 Sum_probs=117.0
Q ss_pred CCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhh--cCCHHHH
Q 001161 187 FQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEE--TGRLGDL 264 (1134)
Q Consensus 187 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~l 264 (1134)
.+.+.+..|+|...-+++.+.+.. ....+.|.|+-.+|||+|..++.+.....=-.+++++ .+.... .......
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHH
Confidence 345666778998555555555542 2357999999999999999999988765422334443 222211 1234444
Q ss_pred HHHHHHHHhcCCCCC-----------CCccccHHHHHHhh-c--CCcceEEEecCCChHH----HHHHhcCcC-C-----
Q 001161 265 RQQLLSTLLNDGNVK-----------NFPNIDLNFQSKKL-T--RKKVLIVFDDVNHPRQ----IKILVGRLD-L----- 320 (1134)
Q Consensus 265 ~~~ll~~l~~~~~~~-----------~~~~~~~~~l~~~L-~--~k~~LlVLDdv~~~~~----l~~l~~~~~-~----- 320 (1134)
.+.+...+...-... .........+.+.+ . +++++|+||+|+..-. .+.+.+.+. |
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 444444333221110 11122233444432 2 5899999999975421 112221110 0
Q ss_pred -CC--CCcEEE-EEeCChhhhh-----hcCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHH
Q 001161 321 -LA--SGSRII-ITTRDRQVLA-----NCGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLA 391 (1134)
Q Consensus 321 -~~--~gsrIi-iTTR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 391 (1134)
.. ..-+++ +.+....... ...+...++|++++.+|...|...+... ......+++...+||+|.-
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~------~~~~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE------FSQEQLEQLMDWTGGHPYL 235 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc------CCHHHHHHHHHHHCCCHHH
Confidence 00 111222 2221111111 1134457899999999999999886522 1123388999999999999
Q ss_pred HHHHHHHhcCC
Q 001161 392 LEVLGRYLYGK 402 (1134)
Q Consensus 392 l~~~g~~L~~~ 402 (1134)
+..++..+...
T Consensus 236 v~~~~~~l~~~ 246 (331)
T PF14516_consen 236 VQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHc
Confidence 99999998654
No 114
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1e-07 Score=98.78 Aligned_cols=173 Identities=18% Similarity=0.273 Sum_probs=104.7
Q ss_pred CCcceeEecCcCcc--ccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCC--ccccCCCCCcE
Q 001161 703 GNIETMHLDGTALE--ELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLP--EELGYLEALDS 778 (1134)
Q Consensus 703 ~~L~~L~L~~n~i~--~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p--~~~~~l~~L~~ 778 (1134)
..|+.|+|+...|+ .+...+..|.+|+.|.|.++++...+-..+.+-.+|+.|+|+.|+-..... -.+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 45777777777776 444456777888888888887766666667777788888888876544322 23455666666
Q ss_pred EEccCCcCcc--cCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCC----CCCCccccccccCcceeec
Q 001161 779 LHAVGTAIRE--LPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCG----ITELPESLGLLSLVTELHL 852 (1134)
Q Consensus 779 L~L~~n~i~~--lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~----l~~lp~~l~~l~~L~~L~L 852 (1134)
|+|+.|.+.. +...+.+ --++|..|+|+++. .+.+..-...+++|..|||
T Consensus 265 LNlsWc~l~~~~Vtv~V~h------------------------ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDL 320 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAH------------------------ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDL 320 (419)
T ss_pred cCchHhhccchhhhHHHhh------------------------hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecc
Confidence 6666655441 1101111 12345555555552 1123333356777778888
Q ss_pred CCCC-cc-ccccchhCCCCCcEEEeccccCCCccC------CcCCCcCeEeccCCcc
Q 001161 853 EGNN-FE-RIPESIIQLSNLEWLFIRYCERLQSLP------KLPCNLIWLDAHHCTA 901 (1134)
Q Consensus 853 s~n~-l~-~lp~~l~~l~~L~~L~Ls~n~~l~~lp------~~~~~L~~L~l~~c~~ 901 (1134)
|+|. ++ ..-..+.+++.|++|.++.|-.+ +| ...|+|.+|++.+|-.
T Consensus 321 SD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 321 SDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence 7763 33 33345677888888888888643 22 2346888888888743
No 115
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=7.1e-05 Score=90.04 Aligned_cols=195 Identities=12% Similarity=0.131 Sum_probs=109.8
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc----CCceeeeeechhHhhcCCHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH----FAGSFFARNVREAEETGRLGD 263 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~~ 263 (1134)
|...+++||-+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+-.. ..+... ...+.-.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~--------~pCg~C~ 82 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA--------TPCGVCQ 82 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC--------CCCCccH
Confidence 4556789999998999999887542 23567899999999999999998765311 000000 0000000
Q ss_pred HHHHHHHHHhcCC-CCCCCccccHHHHHHhh--------cCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeC
Q 001161 264 LRQQLLSTLLNDG-NVKNFPNIDLNFQSKKL--------TRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTR 332 (1134)
Q Consensus 264 l~~~ll~~l~~~~-~~~~~~~~~~~~l~~~L--------~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR 332 (1134)
..+.+...-..+- .........++.+++.+ .++.-++|||+|+.. ...+.|...+.......++|++|.
T Consensus 83 ~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Tt 162 (618)
T PRK14951 83 ACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATT 162 (618)
T ss_pred HHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEEC
Confidence 0011100000000 00000011122222221 123458999999765 346677776665556667766654
Q ss_pred C-hhhhhh-cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHH
Q 001161 333 D-RQVLAN-CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALE 393 (1134)
Q Consensus 333 ~-~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 393 (1134)
+ ..+... ......++++.++.++..+.+.+.+-+... ....+.+..|++.++|.+--+.
T Consensus 163 d~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi--~ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 163 DPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV--PAEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred CchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 4 333322 223468999999999999988876633221 1224567788889988764443
No 116
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.03 E-value=0.0001 Score=86.61 Aligned_cols=167 Identities=13% Similarity=0.192 Sum_probs=99.4
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhccCC--ceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHh
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRHFA--GSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKK 292 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~ 292 (1134)
..-+.|+|..|.|||+|++++++.+....+ .++|+. ..++...+...+.... .....+++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~~-------~~~~~~~~~ 203 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKTH-------KEIEQFKNE 203 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHhh-------hHHHHHHHH
Confidence 345899999999999999999997764332 334442 1233344443332210 112333444
Q ss_pred hcCCcceEEEecCCChH----HHHHHhcCcCC-CCCCcEEEEEeCCh-hh--------hhhcCCCeEEEecCCCHHhHHH
Q 001161 293 LTRKKVLIVFDDVNHPR----QIKILVGRLDL-LASGSRIIITTRDR-QV--------LANCGVDEVYQMKELVHDDALR 358 (1134)
Q Consensus 293 L~~k~~LlVLDdv~~~~----~l~~l~~~~~~-~~~gsrIiiTTR~~-~~--------~~~~~~~~~~~l~~L~~~ea~~ 358 (1134)
++ +.-+||+||+.... ..+.+...++. ...|..||+|+... .. ...+...-++++++++.++-.+
T Consensus 204 ~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 204 IC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATA 282 (450)
T ss_pred hc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHH
Confidence 43 34588999995432 22333332221 13455788886533 22 2222334578899999999999
Q ss_pred HHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHh
Q 001161 359 LFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLGRYL 399 (1134)
Q Consensus 359 Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L 399 (1134)
++.+++-.......-..+.+..|++.++|.|-.+.-+...+
T Consensus 283 iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 283 IIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 99988743221112336778889999999998777655433
No 117
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=1.5e-06 Score=90.41 Aligned_cols=182 Identities=23% Similarity=0.209 Sum_probs=92.0
Q ss_pred CCCCcEEEccCCcCc---ccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCC--CCccccccccCc
Q 001161 773 LEALDSLHAVGTAIR---ELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGIT--ELPESLGLLSLV 847 (1134)
Q Consensus 773 l~~L~~L~L~~n~i~---~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L 847 (1134)
.+.+++|+|.+|.|+ ++-.-+.+++.|+.|+++.|+ +...+...-..+.+|+.|-|.+..+. .....+..+|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-CCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 455666666666665 333344556666666666665 22211111123445666666665544 333445556666
Q ss_pred ceeecCCCCccccc---cchhCC-CCCcEEEeccccCCC-----ccCCcCCCcCeEeccCCcccccccCCCCCCCCccce
Q 001161 848 TELHLEGNNFERIP---ESIIQL-SNLEWLFIRYCERLQ-----SLPKLPCNLIWLDAHHCTALESLPGLFPSSNESYLR 918 (1134)
Q Consensus 848 ~~L~Ls~n~l~~lp---~~l~~l-~~L~~L~Ls~n~~l~-----~lp~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 918 (1134)
++|++|.|++..+- ..+..- +.++.|.+..|.... .+...+|++..+-+..|+.- +....-....++.+-
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK-~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLK-TESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCccc-chhhcccCCCCCcch
Confidence 66666666443211 111111 234444444443211 12234566676766666432 222111112344444
Q ss_pred eeeccCCCCCCccccccch-HHHHHHhHHHHHHhHHhhhhcCCCC
Q 001161 919 TLYLSDNFKLDPNDLGGIV-KGALQKIQLLATARLKEAREKISYP 962 (1134)
Q Consensus 919 ~L~Ls~n~~L~~~~l~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~ 962 (1134)
.|+|+.| ++.... -+.+.+++.|..|.+++|.+...+.
T Consensus 228 ~LnL~~~------~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 228 CLNLGAN------NIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred hhhhccc------ccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 4554444 666543 2578888899999999998876554
No 118
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.01 E-value=8.8e-05 Score=76.99 Aligned_cols=88 Identities=17% Similarity=0.248 Sum_probs=61.4
Q ss_pred CCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeCCh-hhhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCC
Q 001161 295 RKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTRDR-QVLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHP 370 (1134)
Q Consensus 295 ~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 370 (1134)
+.+-++|+|+++.. +..+.+...+....+.+.+|++|++. .+.... .....+++.+++.++..+.+.+..
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g------ 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG------ 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC------
Confidence 35568999999754 34666766666556677777777654 222221 233689999999999999888761
Q ss_pred CccHHHHHHHHHHHhcCChH
Q 001161 371 HESHTELACKIIKYARGVPL 390 (1134)
Q Consensus 371 ~~~~~~~~~~i~~~~~GlPL 390 (1134)
...+.+..+++.++|.|.
T Consensus 169 --i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 --ISEEAAELLLALAGGSPG 186 (188)
T ss_pred --CCHHHHHHHHHHcCCCcc
Confidence 114668899999999885
No 119
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=6.6e-05 Score=87.34 Aligned_cols=199 Identities=13% Similarity=0.121 Sum_probs=109.5
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc--CCceeeeeechhHhhcCCHHHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH--FAGSFFARNVREAEETGRLGDLR 265 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~ 265 (1134)
|...++++|.+..++.|..++..+. -.+.+.++|++|+||||+|+.+++.+... +....|.... ....+.-..-
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~---~~~c~~c~~c 87 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV---TEPCGECESC 87 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC---CCCCCCCHHH
Confidence 4556789999999999999886432 23458899999999999999999876321 1110011000 0000000000
Q ss_pred HHHHHHHhc-----CCCCCCCccccHHHHHHhh-----cCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEe-C
Q 001161 266 QQLLSTLLN-----DGNVKNFPNIDLNFQSKKL-----TRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITT-R 332 (1134)
Q Consensus 266 ~~ll~~l~~-----~~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTT-R 332 (1134)
+++...... +.......++ +..+.+.+ .+++-++|+|+++.. ..++.+...+....+.+.+|++| +
T Consensus 88 ~~~~~~~~~n~~~~~~~~~~~id~-Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 88 RDFDAGTSLNISEFDAASNNSVDD-IRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred HHHhcCCCCCeEeecccccCCHHH-HHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 011000000 0000000111 11122222 234558899999754 35666666665555677766555 4
Q ss_pred Chhhhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHH
Q 001161 333 DRQVLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALE 393 (1134)
Q Consensus 333 ~~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 393 (1134)
...+.... .....+++.+++.++..+.+...+-... ..-..+.+..+++.++|.+--+.
T Consensus 167 ~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 167 LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 34443321 1224688999999999888877652211 12335678889999999775433
No 120
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.00 E-value=0.00012 Score=89.51 Aligned_cols=206 Identities=16% Similarity=0.111 Sum_probs=105.2
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhc--cC---CceeeeeechhHhhcCCHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISR--HF---AGSFFARNVREAEETGRLG 262 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f---~~~~~~~~~~~~~~~~~~~ 262 (1134)
|...++++|++..++.+.+.+... ....+.|+|++|+||||+|+.+++..+. .+ ...-|+..- .........
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~-~~~l~~d~~ 226 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD-GTTLRWDPR 226 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe-chhccCCHH
Confidence 455678999999999988777533 3456999999999999999999875432 11 112232110 100011111
Q ss_pred HHHHHHH---------------HHHhcCC-----------------CCCCCccccHHHHHHhhcCCcceEEEecCCChH-
Q 001161 263 DLRQQLL---------------STLLNDG-----------------NVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR- 309 (1134)
Q Consensus 263 ~l~~~ll---------------~~l~~~~-----------------~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~- 309 (1134)
.+...++ ....... ....-.......+.+.+.++++.++-|+.|..+
T Consensus 227 ~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 227 EVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 1111111 0000000 000001112344555555666666655444322
Q ss_pred -HHHHHhcCcCCCCCCcEEEE--EeCChhhhhh-c-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHH
Q 001161 310 -QIKILVGRLDLLASGSRIII--TTRDRQVLAN-C-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKY 384 (1134)
Q Consensus 310 -~l~~l~~~~~~~~~gsrIii--TTR~~~~~~~-~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~ 384 (1134)
.|+.+...+....+...+++ ||++...+.. . .....+.+.+++.+|.++++.+.+-.... .-..+..+.|.++
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v--~ls~eal~~L~~y 384 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV--HLAAGVEELIARY 384 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHC
Confidence 24444433333333344444 5665432111 1 12246789999999999999987642211 1123455556666
Q ss_pred hcCChHHHHHHHHH
Q 001161 385 ARGVPLALEVLGRY 398 (1134)
Q Consensus 385 ~~GlPLal~~~g~~ 398 (1134)
+..-+-|+..++..
T Consensus 385 s~~gRraln~L~~~ 398 (615)
T TIGR02903 385 TIEGRKAVNILADV 398 (615)
T ss_pred CCcHHHHHHHHHHH
Confidence 65445666655543
No 121
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=7.1e-05 Score=89.01 Aligned_cols=182 Identities=15% Similarity=0.149 Sum_probs=108.2
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc---------------------CCce
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH---------------------FAGS 246 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~ 246 (1134)
|...+++||-+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+-.. |...
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 4566789999999999999996432 23457899999999999999999865321 1111
Q ss_pred eeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh--HHHHHHhcCcCCCCCC
Q 001161 247 FFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP--RQIKILVGRLDLLASG 324 (1134)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~g 324 (1134)
..+. .....++.++ ++++..+... -..++.-++|+|+|+.. ...+.+...+....+.
T Consensus 91 ~eid----aas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~ 149 (509)
T PRK14958 91 FEVD----AASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH 149 (509)
T ss_pred EEEc----ccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence 1111 0011122222 1122211100 01234458899999764 4466666666555667
Q ss_pred cEEEEEeCCh-hhhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHH
Q 001161 325 SRIIITTRDR-QVLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALE 393 (1134)
Q Consensus 325 srIiiTTR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 393 (1134)
+++|++|.+. .+.... .....+++++++.++..+.+...+-.... .-..+.+..|++.++|-+.-+.
T Consensus 150 ~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi--~~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 150 VKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV--EFENAALDLLARAANGSVRDAL 218 (509)
T ss_pred eEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHH
Confidence 7777666554 332221 12356889999999888776665532221 1224456778888998775443
No 122
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.97 E-value=8.6e-05 Score=81.37 Aligned_cols=131 Identities=14% Similarity=0.139 Sum_probs=70.5
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccC--CceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHF--AGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSK 291 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~ 291 (1134)
....+.++|++|.||||+|+.+++.+...- ....++. +... ++ .....++ . ...+++
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~~-------~l----~~~~~g~-----~----~~~~~~ 99 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VERA-------DL----VGEYIGH-----T----AQKTRE 99 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecHH-------Hh----hhhhccc-----h----HHHHHH
Confidence 456688999999999999999998653211 1112221 1110 11 1110000 0 111112
Q ss_pred hhc-CCcceEEEecCCC----------hHHHHHHhcCcCCCCCCcEEEEEeCChhhhh------hc--CCCeEEEecCCC
Q 001161 292 KLT-RKKVLIVFDDVNH----------PRQIKILVGRLDLLASGSRIIITTRDRQVLA------NC--GVDEVYQMKELV 352 (1134)
Q Consensus 292 ~L~-~k~~LlVLDdv~~----------~~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~------~~--~~~~~~~l~~L~ 352 (1134)
.+. ...-+|++|+++. .+.++.+...+........+|+++.....-. .. .....++++.++
T Consensus 100 ~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~ 179 (261)
T TIGR02881 100 VIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYT 179 (261)
T ss_pred HHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCC
Confidence 221 1234889999975 2345666655544334445555554332200 00 123468899999
Q ss_pred HHhHHHHHHHhhc
Q 001161 353 HDDALRLFSRHAF 365 (1134)
Q Consensus 353 ~~ea~~Lf~~~af 365 (1134)
.+|-.+++.+.+.
T Consensus 180 ~~el~~Il~~~~~ 192 (261)
T TIGR02881 180 VEELMEIAERMVK 192 (261)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987763
No 123
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=8.5e-05 Score=88.98 Aligned_cols=180 Identities=13% Similarity=0.123 Sum_probs=106.7
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCC---------------------ce
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFA---------------------GS 246 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---------------------~~ 246 (1134)
|...+++||-+..++.+..++..+. -.+.+.++|+.|+||||+|+.++..+..... ..
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 4556789999999999999887432 2355789999999999999999986632110 00
Q ss_pred eeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH--HHHHHhcCcCCCCCC
Q 001161 247 FFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR--QIKILVGRLDLLASG 324 (1134)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~g 324 (1134)
.++. .....+..+ .++++..... .-..+++-++|+|+++... ..+.|...+......
T Consensus 91 ~ei~----~~~~~~vd~-ir~l~~~~~~----------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 91 IEVD----AASNTQVDA-MRELLDNAQY----------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred eEee----ccccCCHHH-HHHHHHHHhh----------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 0110 000011111 1111111100 0012455689999998654 366666666555566
Q ss_pred cEEEEEeCCh-hhhhh-cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHH
Q 001161 325 SRIIITTRDR-QVLAN-CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLA 391 (1134)
Q Consensus 325 srIiiTTR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 391 (1134)
+.+|++|.+. .+... ......+++++++.++..+.+.+.+-... .....+.+..|++.++|.+--
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg--i~~~~~al~~la~~s~Gslr~ 216 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN--IPFDATALQLLARAAAGSMRD 216 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHH
Confidence 7766666544 33221 11124788999999999888877653222 122345667888999997753
No 124
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.94 E-value=5e-05 Score=86.10 Aligned_cols=152 Identities=16% Similarity=0.226 Sum_probs=88.9
Q ss_pred cCCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHH
Q 001161 186 TFQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLR 265 (1134)
Q Consensus 186 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 265 (1134)
..|...++++|.+...+.+..++..+ .-..++.++|++|+||||+|+++++.....+ ..+.. .. .....+.
T Consensus 15 yrP~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~~----~~-~~~~~i~ 85 (316)
T PHA02544 15 YRPSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVNG----SD-CRIDFVR 85 (316)
T ss_pred cCCCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEecc----Cc-ccHHHHH
Confidence 34566788999999999999988743 2345677799999999999999998763322 22211 11 1122211
Q ss_pred HHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh---HHHHHHhcCcCCCCCCcEEEEEeCChhhh-hh-c
Q 001161 266 QQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP---RQIKILVGRLDLLASGSRIIITTRDRQVL-AN-C 340 (1134)
Q Consensus 266 ~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~---~~l~~l~~~~~~~~~gsrIiiTTR~~~~~-~~-~ 340 (1134)
..+ ...... ..+...+-+||+||++.. +..+.+...+.....+.++|+||.....+ .. .
T Consensus 86 ~~l-~~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~ 149 (316)
T PHA02544 86 NRL-TRFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLR 149 (316)
T ss_pred HHH-HHHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHH
Confidence 111 111000 001134457899999755 22333333334445678899988754321 11 1
Q ss_pred CCCeEEEecCCCHHhHHHHHHH
Q 001161 341 GVDEVYQMKELVHDDALRLFSR 362 (1134)
Q Consensus 341 ~~~~~~~l~~L~~~ea~~Lf~~ 362 (1134)
.....+.++..+.++..+++..
T Consensus 150 sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 150 SRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred hhceEEEeCCCCHHHHHHHHHH
Confidence 1224677878888888776654
No 125
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00014 Score=87.83 Aligned_cols=197 Identities=17% Similarity=0.186 Sum_probs=112.5
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCC----ceeeeeechhHhhcCCHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFA----GSFFARNVREAEETGRLGD 263 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~----~~~~~~~~~~~~~~~~~~~ 263 (1134)
|...++++|.+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+-.... +..+-. .+...
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~--------cg~c~ 90 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL--------CGVGE 90 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc--------CcccH
Confidence 4566789999999999999887542 2456889999999999999999986643221 000000 00000
Q ss_pred HHHHHHHHHhcCCCC-CCCccccHHHHH---Hhh-----cCCcceEEEecCCChH--HHHHHhcCcCCCCCCcEEEEEe-
Q 001161 264 LRQQLLSTLLNDGNV-KNFPNIDLNFQS---KKL-----TRKKVLIVFDDVNHPR--QIKILVGRLDLLASGSRIIITT- 331 (1134)
Q Consensus 264 l~~~ll~~l~~~~~~-~~~~~~~~~~l~---~~L-----~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIiiTT- 331 (1134)
-.+.+......+-.. .......++.++ +.+ ..++-++|+|+++... ..+.|...+....+.+.+|++|
T Consensus 91 ~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tt 170 (598)
T PRK09111 91 HCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATT 170 (598)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 001111100000000 000001112222 111 2344578999997553 4666666665556677766555
Q ss_pred CChhhhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHH
Q 001161 332 RDRQVLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVL 395 (1134)
Q Consensus 332 R~~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 395 (1134)
....+.... .....+++..++.++..+.+.+.+-+.. .....+.+..|++.++|.+.-+...
T Consensus 171 e~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg--i~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 171 EIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG--VEVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred ChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 434443332 2335789999999999998888763322 1223466788899999988655433
No 126
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=4.6e-06 Score=86.86 Aligned_cols=183 Identities=16% Similarity=0.141 Sum_probs=99.8
Q ss_pred CCcceeEecCcCccc---cCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCC-CCCccccCCCCCcE
Q 001161 703 GNIETMHLDGTALEE---LPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQ-RLPEELGYLEALDS 778 (1134)
Q Consensus 703 ~~L~~L~L~~n~i~~---lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~p~~~~~l~~L~~ 778 (1134)
..+++|+|.+|.|+. +-..+.++|.|+.|+|+.|++...+...=..+.+|++|.|.|..+.- .....+..+|.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 567777777777763 33346677777777777776543322110245567777776644321 12233455666667
Q ss_pred EEccCCcCcccCc---cccC-CCCCCEEEecCCCCCCCCcc-cccCCCCCCCEEeccCCCCCCCc--cccccccCcceee
Q 001161 779 LHAVGTAIRELPP---SIVR-LKSVRAIYFGRNRGLSLPIT-FSVDGLQNLRDLNLNDCGITELP--ESLGLLSLVTELH 851 (1134)
Q Consensus 779 L~L~~n~i~~lp~---~~~~-l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~ 851 (1134)
|+++.|++..+.. .+.. -+.++.|.+..|........ ..-.-+|++..+-+..|.+.+.. .....++.+-.|+
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 7666665442211 1111 12333333332210000000 01123567777777777666432 2345566777788
Q ss_pred cCCCCccccc--cchhCCCCCcEEEeccccCCCccC
Q 001161 852 LEGNNFERIP--ESIIQLSNLEWLFIRYCERLQSLP 885 (1134)
Q Consensus 852 Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~~l~~lp 885 (1134)
|+.|+|.+.. +.+.+++.|..|.++++++...+.
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 8888777443 356777888888888877765544
No 127
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00017 Score=83.53 Aligned_cols=182 Identities=17% Similarity=0.237 Sum_probs=107.0
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc--------CCceeeeeechhHhhcC
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH--------FAGSFFARNVREAEETG 259 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--------f~~~~~~~~~~~~~~~~ 259 (1134)
|...++++|.+..++.+...+..+ .-.+.+.++|++|+||||+|+++++.+... |...++- . ......
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~--l-~~~~~~ 88 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE--L-DAASNN 88 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE--e-ccccCC
Confidence 455678899999999999998643 234578899999999999999998876431 1111111 0 000111
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEe-CChhh
Q 001161 260 RLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITT-RDRQV 336 (1134)
Q Consensus 260 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTT-R~~~~ 336 (1134)
+...+ .++..++... -..+++-++|+|+++.. ..++.+...+........+|++| +...+
T Consensus 89 ~~~~i-~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 89 SVDDI-RNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred CHHHH-HHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 11121 1222211100 01234458999998654 33556654444334455666555 33333
Q ss_pred hhh-cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHH
Q 001161 337 LAN-CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLAL 392 (1134)
Q Consensus 337 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 392 (1134)
... ......+++.+++.++....+...+..... .-..+.+..+++.++|.+-.+
T Consensus 152 ~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~--~i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 152 IPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI--KFEDDALHIIAQKADGALRDA 206 (367)
T ss_pred CHHHHhcceeEecCCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHH
Confidence 322 123357899999999999888876643222 122467788888898866533
No 128
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.91 E-value=0.00023 Score=84.56 Aligned_cols=178 Identities=15% Similarity=0.165 Sum_probs=100.7
Q ss_pred ccccchh--HHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCc--eeeeeechhHhhcCCHHHHHHHHH
Q 001161 194 LVGVRLP--MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAG--SFFARNVREAEETGRLGDLRQQLL 269 (1134)
Q Consensus 194 ~vGr~~~--~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~~~ll 269 (1134)
++|.... ......+....+....-+.|+|.+|.|||+||+++++.+..+++. +.|+.. ..+..++.
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~----------~~~~~~~~ 194 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS----------EKFTNDFV 194 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH----------HHHHHHHH
Confidence 3465443 233333333222334568999999999999999999988776543 334421 12222333
Q ss_pred HHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH----HHHHHhcCcCC-CCCCcEEEEEeCCh-h--------
Q 001161 270 STLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR----QIKILVGRLDL-LASGSRIIITTRDR-Q-------- 335 (1134)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----~l~~l~~~~~~-~~~gsrIiiTTR~~-~-------- 335 (1134)
..+... ....+++.++ +.-+|||||++... ..+.+...+.. ...|..||+|+... .
T Consensus 195 ~~~~~~---------~~~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~ 264 (450)
T PRK00149 195 NALRNN---------TMEEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEER 264 (450)
T ss_pred HHHHcC---------cHHHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHH
Confidence 332111 1233344444 34589999995421 12223222111 12345678877643 1
Q ss_pred hhhhcCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHH
Q 001161 336 VLANCGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALE 393 (1134)
Q Consensus 336 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 393 (1134)
+...+....++++++++.++-.+++...+-.. ...-..+.+..|++.+.|..-.|.
T Consensus 265 l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~--~~~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 265 LRSRFEWGLTVDIEPPDLETRIAILKKKAEEE--GIDLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHhHhcCCeeEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHcCcCCCHHHHH
Confidence 12223334578999999999999999887432 122235677888888888766544
No 129
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.89 E-value=0.00031 Score=82.55 Aligned_cols=159 Identities=17% Similarity=0.164 Sum_probs=92.9
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhccCC--ceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHh
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRHFA--GSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKK 292 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~ 292 (1134)
..-+.|+|.+|+|||+||+++++.+....+ .+.|+. ..++..++...+... ....+++.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~----------~~~f~~~~~~~~~~~---------~~~~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFLNDLVDSMKEG---------KLNEFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHhcc---------cHHHHHHH
Confidence 345899999999999999999998776553 344442 122333443333211 12233444
Q ss_pred hcCCcceEEEecCCCh---HH-HHHHhcCcCC-CCCCcEEEEEeC-Chhhhh--------hcCCCeEEEecCCCHHhHHH
Q 001161 293 LTRKKVLIVFDDVNHP---RQ-IKILVGRLDL-LASGSRIIITTR-DRQVLA--------NCGVDEVYQMKELVHDDALR 358 (1134)
Q Consensus 293 L~~k~~LlVLDdv~~~---~~-l~~l~~~~~~-~~~gsrIiiTTR-~~~~~~--------~~~~~~~~~l~~L~~~ea~~ 358 (1134)
.+.+.-+|++||++.. .. -+.+...+.. ...|..||+||. .+.-+. ......++++++.+.++-.+
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 4445668999999743 11 1222221111 123457888874 332221 12233578999999999999
Q ss_pred HHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHH
Q 001161 359 LFSRHAFEGDHPHESHTELACKIIKYARGVPLALEV 394 (1134)
Q Consensus 359 Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 394 (1134)
++.+.+-... ..-..+.+..|++.+.|.--.|.-
T Consensus 271 IL~~~~~~~~--~~l~~ev~~~Ia~~~~~~~R~L~g 304 (440)
T PRK14088 271 IARKMLEIEH--GELPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_pred HHHHHHHhcC--CCCCHHHHHHHHhccccCHHHHHH
Confidence 9988874322 122256777888888776554443
No 130
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.89 E-value=0.00013 Score=85.64 Aligned_cols=157 Identities=17% Similarity=0.264 Sum_probs=91.0
Q ss_pred ccCCccccchhHHHHHHhhcc-----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccC-----Cceeeeeech
Q 001161 190 ENEDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF-----AGSFFARNVR 253 (1134)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~~~~~~~ 253 (1134)
...++.|.+..++++.+.+.. +-...+-+.++|++|.|||++|+++++.+...+ ....|+. +.
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~ 258 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IK 258 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-cc
Confidence 445688899999888876532 112345689999999999999999999876542 2233432 11
Q ss_pred hHh--hcC--CHHHHHHHHHHHHhcCCCCCCCccccHHHHHHh-hcCCcceEEEecCCChH---------H-----HHHH
Q 001161 254 EAE--ETG--RLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKK-LTRKKVLIVFDDVNHPR---------Q-----IKIL 314 (1134)
Q Consensus 254 ~~~--~~~--~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVLDdv~~~~---------~-----l~~l 314 (1134)
... ..+ ......+.+ ....++. ..+++++|+||+++..- + +..+
T Consensus 259 ~~eLl~kyvGete~~ir~i-----------------F~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~L 321 (512)
T TIGR03689 259 GPELLNKYVGETERQIRLI-----------------FQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQL 321 (512)
T ss_pred chhhcccccchHHHHHHHH-----------------HHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHH
Confidence 100 000 000001111 1111111 12478999999997431 1 2234
Q ss_pred hcCcCCCC--CCcEEEEEeCChhhhhh-----cCCCeEEEecCCCHHhHHHHHHHhh
Q 001161 315 VGRLDLLA--SGSRIIITTRDRQVLAN-----CGVDEVYQMKELVHDDALRLFSRHA 364 (1134)
Q Consensus 315 ~~~~~~~~--~gsrIiiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1134)
+..++... .+..||.||.....+.. ...+..++++..+.++..++|..+.
T Consensus 322 L~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 322 LSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred HHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 33333222 34456666655544321 1335678999999999999999886
No 131
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.00022 Score=89.11 Aligned_cols=193 Identities=10% Similarity=0.066 Sum_probs=107.9
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccC--Cc-eeeeeechhHhh--c-CCH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF--AG-SFFARNVREAEE--T-GRL 261 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~-~~~~~~~~~~~~--~-~~~ 261 (1134)
|....++||.+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+.... .. .|=. +-.+..- . .+-
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~-C~sC~~~~~g~~~~ 88 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE-CDSCVALAPGGPGS 88 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc-cHHHHHHHcCCCCC
Confidence 4456789999999999999987532 235678999999999999999998763211 00 0000 0000000 0 000
Q ss_pred HHHHHHHHHHHhcCCCCCCCccccHHHHHHh-----hcCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeCCh
Q 001161 262 GDLRQQLLSTLLNDGNVKNFPNIDLNFQSKK-----LTRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTRDR 334 (1134)
Q Consensus 262 ~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~-----L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR~~ 334 (1134)
.++. .+ +.......++ ++.+++. ...++-++|||+++.. ...+.|+..+......+.+|++|.+.
T Consensus 89 ~dv~-----ei--daas~~~Vd~-iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~ 160 (824)
T PRK07764 89 LDVT-----EI--DAASHGGVDD-ARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEP 160 (824)
T ss_pred CcEE-----Ee--cccccCCHHH-HHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 0000 00 0000000011 1111111 2234457889999765 34666666666556677766655433
Q ss_pred -hhhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHH
Q 001161 335 -QVLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLAL 392 (1134)
Q Consensus 335 -~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 392 (1134)
.+.... .....|++..++.++..+.+.+.+-... .....+....|++.++|.+..+
T Consensus 161 ~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG--v~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 161 DKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG--VPVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 444332 2346899999999999888877552222 1122455678889999977433
No 132
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.87 E-value=6.3e-05 Score=87.07 Aligned_cols=156 Identities=19% Similarity=0.262 Sum_probs=92.3
Q ss_pred CccCCccccchhHHHHHHhhccC-----------CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhh
Q 001161 189 SENEDLVGVRLPMKEIESLLRTG-----------STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEE 257 (1134)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 257 (1134)
....++.|++..++++.+.+... -...+-|.++|++|.|||++|+++++.....|- .+... .
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~~s-e--- 252 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVVGS-E--- 252 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEecc-h---
Confidence 34467889999999998876421 123456889999999999999999998765441 11100 0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH----------------HHHHHhcCcCCC
Q 001161 258 TGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR----------------QIKILVGRLDLL 321 (1134)
Q Consensus 258 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~ 321 (1134)
+..... +. ........+.......+.+|+||+++... .+..++..+..+
T Consensus 253 ------L~~k~~----Ge-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~ 317 (438)
T PTZ00361 253 ------LIQKYL----GD-----GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGF 317 (438)
T ss_pred ------hhhhhc----ch-----HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhh
Confidence 000000 00 00001111222223567899999875321 122233222221
Q ss_pred --CCCcEEEEEeCChhhhhhc-----CCCeEEEecCCCHHhHHHHHHHhhcC
Q 001161 322 --ASGSRIIITTRDRQVLANC-----GVDEVYQMKELVHDDALRLFSRHAFE 366 (1134)
Q Consensus 322 --~~gsrIiiTTR~~~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~af~ 366 (1134)
..+.+||+||.....+... ..+..++++..+.++..++|..++.+
T Consensus 318 ~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 318 DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 3456788888766554332 23568899999999999999987743
No 133
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=1.3e-05 Score=60.41 Aligned_cols=40 Identities=35% Similarity=0.549 Sum_probs=24.8
Q ss_pred CCCCEEeccCCCCCCCccccccccCcceeecCCCCccccc
Q 001161 822 QNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFERIP 861 (1134)
Q Consensus 822 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 861 (1134)
++|++|++++|+|+++|..++++++|+.|++++|+|++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3566666666666666666666666666666666666554
No 134
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.85 E-value=0.00035 Score=81.92 Aligned_cols=158 Identities=20% Similarity=0.225 Sum_probs=91.5
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhccCC--ceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHh
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRHFA--GSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKK 292 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~ 292 (1134)
...+.|+|.+|+|||+||+++++.+..+.+ .++|+. ..++..++...+... ....+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~---------~~~~~~~~ 196 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS----------SEKFTNDFVNALRNN---------KMEEFKEK 196 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE----------HHHHHHHHHHHHHcC---------CHHHHHHH
Confidence 356899999999999999999998876643 234442 112222333333211 12333444
Q ss_pred hcCCcceEEEecCCChH---H-HHHHhcCcCCC-CCCcEEEEEeCC-hhhh--------hhcCCCeEEEecCCCHHhHHH
Q 001161 293 LTRKKVLIVFDDVNHPR---Q-IKILVGRLDLL-ASGSRIIITTRD-RQVL--------ANCGVDEVYQMKELVHDDALR 358 (1134)
Q Consensus 293 L~~k~~LlVLDdv~~~~---~-l~~l~~~~~~~-~~gsrIiiTTR~-~~~~--------~~~~~~~~~~l~~L~~~ea~~ 358 (1134)
+++ .-+|||||++... . .+.+...+... ..+..+|+|+.. ...+ ..+....++++++.+.++-.+
T Consensus 197 ~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 197 YRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred HHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence 433 3488999996431 1 12232222111 234567777753 2222 122223468999999999999
Q ss_pred HHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHH
Q 001161 359 LFSRHAFEGDHPHESHTELACKIIKYARGVPLALEV 394 (1134)
Q Consensus 359 Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 394 (1134)
++.+.+-... ..-..+....|++.+.|..-.+.-
T Consensus 276 il~~~~~~~~--~~l~~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 276 ILQKKAEEEG--LELPDEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred HHHHHHHHcC--CCCCHHHHHHHHHhcCCCHHHHHH
Confidence 9998874322 222356777788888877655443
No 135
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.85 E-value=0.00026 Score=85.93 Aligned_cols=193 Identities=13% Similarity=0.143 Sum_probs=107.7
Q ss_pred CCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhh-cCCHHHHH
Q 001161 187 FQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEE-TGRLGDLR 265 (1134)
Q Consensus 187 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~l~ 265 (1134)
.|....+++|.+..++.|...+..+. -.+.+.++|+.|+||||+|+.++..+-..-....+-.+-.+... ...+ ++
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~-Dv- 89 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSL-DI- 89 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCC-cE-
Confidence 34556789999999999999887532 24567899999999999999999865321110000000000000 0000 00
Q ss_pred HHHHHHHhcCCCCCCCccccHHHHHHhh-----cCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEe-CChhhh
Q 001161 266 QQLLSTLLNDGNVKNFPNIDLNFQSKKL-----TRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITT-RDRQVL 337 (1134)
Q Consensus 266 ~~ll~~l~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTT-R~~~~~ 337 (1134)
+..+.......++ ++.+.+.+ .+++-++|+|+++.. ..+..|+..+....+...+|++| +...+.
T Consensus 90 ------ieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 90 ------IEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred ------EEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 0000000000000 11222222 245558899999754 44667776665545566655444 444444
Q ss_pred hh-cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHH
Q 001161 338 AN-CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLA 391 (1134)
Q Consensus 338 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 391 (1134)
.. ......+++.+++.++..+.+...+-... .....+.+..+++.++|-+--
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg--I~id~eAl~~LA~lS~GslR~ 215 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKEN--ISYEKNALKLIAKLSSGSLRD 215 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHH
Confidence 33 22346899999999999988887553222 112245577889999886643
No 136
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.85 E-value=0.0002 Score=90.61 Aligned_cols=193 Identities=12% Similarity=0.157 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhhccccCCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCC------
Q 001161 171 LIEEIVNAILKRVDDTFQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFA------ 244 (1134)
Q Consensus 171 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~------ 244 (1134)
.+++...++..+.. +...+.+|||+.++.++...|..... .-+.++|.+|+||||+|+.+++++.....
T Consensus 169 ~l~~~~~~L~~~~r---~~~ld~~iGr~~ei~~~i~~l~r~~~--~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~ 243 (852)
T TIGR03345 169 ALDQYTTDLTAQAR---EGKIDPVLGRDDEIRQMIDILLRRRQ--NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRN 243 (852)
T ss_pred hHHHHhhhHHHHhc---CCCCCcccCCHHHHHHHHHHHhcCCc--CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccC
Confidence 44554444444433 34456899999999999998865432 34679999999999999999998754321
Q ss_pred ceeeeeechhHh-hcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhh--cCCcceEEEecCCChH-------H--HH
Q 001161 245 GSFFARNVREAE-ETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL--TRKKVLIVFDDVNHPR-------Q--IK 312 (1134)
Q Consensus 245 ~~~~~~~~~~~~-~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVLDdv~~~~-------~--l~ 312 (1134)
..+|..+..... ......+..++ +..+.+.+ .+++++|++|+++... + ..
T Consensus 244 ~~i~~l~l~~l~ag~~~~ge~e~~------------------lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~ 305 (852)
T TIGR03345 244 VRLLSLDLGLLQAGASVKGEFENR------------------LKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAA 305 (852)
T ss_pred CeEEEeehhhhhcccccchHHHHH------------------HHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHH
Confidence 223322221111 00000011111 11111111 2468999999986542 1 11
Q ss_pred -HHhcCcCCCCCCcEEEEEeCChhhhhh-------cCCCeEEEecCCCHHhHHHHHHHhhcC--CCCCCccHHHHHHHHH
Q 001161 313 -ILVGRLDLLASGSRIIITTRDRQVLAN-------CGVDEVYQMKELVHDDALRLFSRHAFE--GDHPHESHTELACKII 382 (1134)
Q Consensus 313 -~l~~~~~~~~~gsrIiiTTR~~~~~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~af~--~~~~~~~~~~~~~~i~ 382 (1134)
.|.+.+. ...-++|-||...+.-+. .....++.|++++.+++.+++....-. ..+...-..+....++
T Consensus 306 n~Lkp~l~--~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~ 383 (852)
T TIGR03345 306 NLLKPALA--RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAV 383 (852)
T ss_pred HHhhHHhh--CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHH
Confidence 2333322 223556666654322111 112358999999999999997543311 1111122244455666
Q ss_pred HHhcCC
Q 001161 383 KYARGV 388 (1134)
Q Consensus 383 ~~~~Gl 388 (1134)
+.+.+.
T Consensus 384 ~ls~ry 389 (852)
T TIGR03345 384 ELSHRY 389 (852)
T ss_pred HHcccc
Confidence 666543
No 137
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00023 Score=85.04 Aligned_cols=198 Identities=12% Similarity=0.125 Sum_probs=111.7
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccC--CceeeeeechhHhhcCCHHHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF--AGSFFARNVREAEETGRLGDLR 265 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~ 265 (1134)
|...++++|-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-... ....+ +.-...
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pC-----------g~C~sC 79 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPC-----------NTCEQC 79 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCC-----------cccHHH
Confidence 455677899998888888888643 2246788999999999999999998653211 00000 000000
Q ss_pred HHHHHHHhcCCC-CCCCccccHH---HHHHh-----hcCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeCC-
Q 001161 266 QQLLSTLLNDGN-VKNFPNIDLN---FQSKK-----LTRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTRD- 333 (1134)
Q Consensus 266 ~~ll~~l~~~~~-~~~~~~~~~~---~l~~~-----L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR~- 333 (1134)
+.+......+-. ........++ .+++. ..+++-+||+|+++.. +....|...+........+|++|.+
T Consensus 80 ~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~ 159 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEP 159 (624)
T ss_pred HHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCCh
Confidence 011000000000 0000000111 11111 1345568999999765 4466666665544455666665655
Q ss_pred hhhhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCCh-HHHHHHHHHh
Q 001161 334 RQVLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVP-LALEVLGRYL 399 (1134)
Q Consensus 334 ~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~g~~L 399 (1134)
..+.... .....+++.+++.++..+.+...+..... .-..+.+..|++.++|.+ .|+..+...+
T Consensus 160 ~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 160 HKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3433221 22357899999999999888876643221 123566788899999864 5666665443
No 138
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.83 E-value=0.00055 Score=72.57 Aligned_cols=184 Identities=15% Similarity=0.160 Sum_probs=113.4
Q ss_pred CCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHh--ccCCceeeeeechhHhhcCCHHHH
Q 001161 187 FQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKIS--RHFAGSFFARNVREAEETGRLGDL 264 (1134)
Q Consensus 187 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~~~~~~~~~~~~~~~l 264 (1134)
.|...++++|-+..+..|...+.. ........+|++|.|||+-|+++++.+- +-|+.++--.+ ++...|..-+
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln---aSderGisvv 105 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN---ASDERGISVV 105 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc---ccccccccch
Confidence 355667899999999999988864 4567889999999999999999998653 34554443222 2222222211
Q ss_pred HHHH--HHHHhcCCCCCCCccccHHHHHHhhcCCc-ceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeCChhhhhh
Q 001161 265 RQQL--LSTLLNDGNVKNFPNIDLNFQSKKLTRKK-VLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTRDRQVLAN 339 (1134)
Q Consensus 265 ~~~l--l~~l~~~~~~~~~~~~~~~~l~~~L~~k~-~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~~ 339 (1134)
...+ .+++....... . .. ..++ -.||||+++.. +.|.++......+...+|.|+.+..-..+..
T Consensus 106 r~Kik~fakl~~~~~~~-~---------~~-~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~ 174 (346)
T KOG0989|consen 106 REKIKNFAKLTVLLKRS-D---------GY-PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIR 174 (346)
T ss_pred hhhhcCHHHHhhccccc-c---------CC-CCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCCh
Confidence 1111 00000000000 0 00 0122 37899999865 4588888877777777886655544433221
Q ss_pred c--CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCC
Q 001161 340 C--GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGV 388 (1134)
Q Consensus 340 ~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl 388 (1134)
. ..-.-|..++|.+++..+-+...+-+.. .+-..+..+.|+++++|-
T Consensus 175 pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~--v~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 175 PLVSRCQKFRFKKLKDEDIVDRLEKIASKEG--VDIDDDALKLIAKISDGD 223 (346)
T ss_pred HHHhhHHHhcCCCcchHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCc
Confidence 1 1224578999999999998888774333 233467788899999884
No 139
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00034 Score=82.71 Aligned_cols=187 Identities=14% Similarity=0.146 Sum_probs=111.1
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhc-cCCc--eeee---------------
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISR-HFAG--SFFA--------------- 249 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~--~~~~--------------- 249 (1134)
|...+++||-+...+.|...+..+. -.+...++|+.|.||||+|+.+++.+-. .... .|..
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 4556789999999999999886442 2356689999999999999999986521 1110 0000
Q ss_pred eechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEE
Q 001161 250 RNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRI 327 (1134)
Q Consensus 250 ~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrI 327 (1134)
... ......++..+...+ ..... .-..+++-++|+|+++.. +..+.|+..+....+.+++
T Consensus 89 ~el-daas~~gId~IReli-e~~~~----------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~F 150 (535)
T PRK08451 89 IEM-DAASNRGIDDIRELI-EQTKY----------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKF 150 (535)
T ss_pred EEe-ccccccCHHHHHHHH-HHHhh----------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEE
Confidence 000 000001122221111 11000 001134558899999755 3466676666655667787
Q ss_pred EEEeCChh-hhhh-cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHH
Q 001161 328 IITTRDRQ-VLAN-CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVL 395 (1134)
Q Consensus 328 iiTTR~~~-~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 395 (1134)
|++|.+.. +... ......+++.+++.++..+.+...+-.... .-..+.+..|++.++|.+--+..+
T Consensus 151 IL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi--~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 151 ILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV--SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 77776642 2211 122368899999999999988776633221 222567788999999988544433
No 140
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.83 E-value=1e-05 Score=83.31 Aligned_cols=137 Identities=18% Similarity=0.214 Sum_probs=82.3
Q ss_pred ccCCCCCCcEEeecCCCCCCCCCcc----ccCCCCCcEEEccCCcCcccCc-----c---------ccCCCCCCEEEecC
Q 001161 745 GLCKLKSLDVLNIDGCSNLQRLPEE----LGYLEALDSLHAVGTAIRELPP-----S---------IVRLKSVRAIYFGR 806 (1134)
Q Consensus 745 ~l~~l~~L~~L~L~~~~~~~~~p~~----~~~l~~L~~L~L~~n~i~~lp~-----~---------~~~l~~L~~L~l~~ 806 (1134)
.+.+||.|+..+||.|-+....|+. +.+-+.|.+|.|++|.+..+.. . ..+-+.|+......
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 3567788888888888776666654 4556778888888887763321 1 22346677777777
Q ss_pred CCCCCCCccc---ccCCCCCCCEEeccCCCCCC--C----ccccccccCcceeecCCCCcccc-----ccchhCCCCCcE
Q 001161 807 NRGLSLPITF---SVDGLQNLRDLNLNDCGITE--L----PESLGLLSLVTELHLEGNNFERI-----PESIIQLSNLEW 872 (1134)
Q Consensus 807 n~~~~~~~~~---~~~~l~~L~~L~Ls~n~l~~--l----p~~l~~l~~L~~L~Ls~n~l~~l-----p~~l~~l~~L~~ 872 (1134)
|+...+.... .+..-.+|+++.+..|.|.. + -..+..+.+|+.|||..|-++.. ...+..-+.|+.
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 7744443221 23333567777777777662 1 12334566777777777766622 223344455677
Q ss_pred EEeccccCC
Q 001161 873 LFIRYCERL 881 (1134)
Q Consensus 873 L~Ls~n~~l 881 (1134)
|.+.+|-+.
T Consensus 247 L~lnDClls 255 (388)
T COG5238 247 LRLNDCLLS 255 (388)
T ss_pred ccccchhhc
Confidence 777666543
No 141
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.83 E-value=0.00022 Score=89.74 Aligned_cols=169 Identities=13% Similarity=0.156 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhhccccCCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccC------C
Q 001161 171 LIEEIVNAILKRVDDTFQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF------A 244 (1134)
Q Consensus 171 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~ 244 (1134)
.+++...++..+.. +...+.++||+.+++.+...|.... ..-+.++|++|+|||++|+.+++++...- .
T Consensus 164 ~l~~~~~~l~~~~r---~~~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~ 238 (731)
T TIGR02639 164 ALEKYTVDLTEKAK---NGKIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKN 238 (731)
T ss_pred HHHHHhhhHHHHHh---cCCCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcC
Confidence 44554444444443 3345679999999999999886543 23467999999999999999999874431 2
Q ss_pred ceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhh-cCCcceEEEecCCChH-----------HHH
Q 001161 245 GSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL-TRKKVLIVFDDVNHPR-----------QIK 312 (1134)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~~-----------~l~ 312 (1134)
..+|..+........ . .....+.....+.+.+ ..++.+|++|+++... ..+
T Consensus 239 ~~~~~~~~~~l~a~~----------------~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~ 301 (731)
T TIGR02639 239 AKIYSLDMGSLLAGT----------------K-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASN 301 (731)
T ss_pred CeEEEecHHHHhhhc----------------c-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHH
Confidence 233332221111000 0 0011111122222222 2457899999986331 123
Q ss_pred HHhcCcCCCCCC-cEEEEEeCChhhhhh-------cCCCeEEEecCCCHHhHHHHHHHhh
Q 001161 313 ILVGRLDLLASG-SRIIITTRDRQVLAN-------CGVDEVYQMKELVHDDALRLFSRHA 364 (1134)
Q Consensus 313 ~l~~~~~~~~~g-srIiiTTR~~~~~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1134)
.+.+.+ ..| -++|-+|...+.-.. ...-..++++.++.++..+++....
T Consensus 302 ~L~~~l---~~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 302 LLKPAL---SSGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHH---hCCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 333333 223 345554443221100 1123478999999999999998654
No 142
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.83 E-value=0.00032 Score=80.77 Aligned_cols=174 Identities=15% Similarity=0.197 Sum_probs=98.9
Q ss_pred CccCCccccchhHHHHHHhhcc-----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhh
Q 001161 189 SENEDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEE 257 (1134)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 257 (1134)
....++.|.+...+++.+.+.. +-...+-|.++|++|.|||++|+++++.....|- .+. ..
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~--~s--- 213 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVV--GS--- 213 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe--hH---
Confidence 3456789999999888876542 1134567999999999999999999987644331 111 00
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH----------------HHHHHhcCcCCC
Q 001161 258 TGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR----------------QIKILVGRLDLL 321 (1134)
Q Consensus 258 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~ 321 (1134)
.+.... .++ ........+.......+.+|++|+++... .+..+...+...
T Consensus 214 -----~l~~k~----~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 214 -----EFVQKY----LGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred -----HHHHHh----cch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 011100 000 00001112222234578899999976420 122333333222
Q ss_pred --CCCcEEEEEeCChhhhhh-----cCCCeEEEecCCCHHhHHHHHHHhhcCCCC-CCccHHHHHHHHHHHhcCC
Q 001161 322 --ASGSRIIITTRDRQVLAN-----CGVDEVYQMKELVHDDALRLFSRHAFEGDH-PHESHTELACKIIKYARGV 388 (1134)
Q Consensus 322 --~~gsrIiiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~Gl 388 (1134)
..+..||+||.....+.. ...+..++++..+.++..++|..+..+... +..+ ..++++.+.|.
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~ 350 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKI 350 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCC
Confidence 245678888876644322 134667899999999998888876633221 1122 34555666555
No 143
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00042 Score=83.22 Aligned_cols=196 Identities=15% Similarity=0.111 Sum_probs=109.5
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQ 267 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 267 (1134)
|...+++||.+..++.|...+..+. -.+.+.++|+.|+||||+|+.++..+...... ..- ..+.-...+.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~-~~~--------pCg~C~~C~~ 78 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGP-TAT--------PCGVCESCVA 78 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCC-CCC--------cccccHHHHH
Confidence 4456789999999999999987432 23457899999999999999999865421100 000 0000000000
Q ss_pred HHHHHhcCCCC---CCCccccHHHH---HHh-----hcCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeC-C
Q 001161 268 LLSTLLNDGNV---KNFPNIDLNFQ---SKK-----LTRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTR-D 333 (1134)
Q Consensus 268 ll~~l~~~~~~---~~~~~~~~~~l---~~~-----L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR-~ 333 (1134)
+...-....+. ......+++.+ ++. ...++-++|+|+++.. ...+.|+..+........+|++|. .
T Consensus 79 i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~ 158 (584)
T PRK14952 79 LAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEP 158 (584)
T ss_pred hhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 00000000000 00000011111 111 1234558899999754 446677666665566666665554 4
Q ss_pred hhhhhh-cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChH-HHHHH
Q 001161 334 RQVLAN-CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPL-ALEVL 395 (1134)
Q Consensus 334 ~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 395 (1134)
..+... ......|++..++.++..+.+.+.+-.... ....+.+..|++.++|-+- |+..+
T Consensus 159 ~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi--~i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 159 EKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV--VVDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred HhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 444433 223468999999999998888776643221 1224566778889999774 33333
No 144
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00048 Score=81.01 Aligned_cols=181 Identities=15% Similarity=0.204 Sum_probs=105.8
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccC---C----cee-------------
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF---A----GSF------------- 247 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---~----~~~------------- 247 (1134)
|...++++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++.+-..- + +.|
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 4456789999999999999886432 235678999999999999999998653210 0 000
Q ss_pred eeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh--HHHHHHhcCcCCCCCCc
Q 001161 248 FARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP--RQIKILVGRLDLLASGS 325 (1134)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gs 325 (1134)
|+. + ......++.++. ++...+. ..-...++-++|+|+++.. +..+.|...+.......
T Consensus 92 ~~~-i-~g~~~~gid~ir-~i~~~l~----------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 VLE-I-DGASHRGIEDIR-QINETVL----------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred eEE-e-eccccCCHHHHH-HHHHHHH----------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 000 0 000000111111 1111000 0001245668899998754 34555665555445566
Q ss_pred EEEEEeCC-hhhhhh-cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChH
Q 001161 326 RIIITTRD-RQVLAN-CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPL 390 (1134)
Q Consensus 326 rIiiTTR~-~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 390 (1134)
.+|++|.. ..+... ......+++.+++.++..+.+...+-+.. ..-..+.+..++++++|.+-
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg--~~i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG--IETSREALLPIARAAQGSLR 217 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 67666643 333322 12345789999999999888877653221 12235677889999999764
No 145
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00045 Score=83.60 Aligned_cols=196 Identities=14% Similarity=0.122 Sum_probs=107.4
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc--CCceeeeeechhHhhcCCHHHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH--FAGSFFARNVREAEETGRLGDLR 265 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~ 265 (1134)
|...+++||-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.. .+...|..... ...+.-...
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~---~~Cg~C~sC 87 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT---EPCGECESC 87 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC---CCCccCHHH
Confidence 445678999999999999988643 223558899999999999999999865321 11011111000 000000001
Q ss_pred HHHHHHHhc-----CCCCCCCccccHHHHHHhh-----cCCcceEEEecCCChH--HHHHHhcCcCCCCCCcEEEEEe-C
Q 001161 266 QQLLSTLLN-----DGNVKNFPNIDLNFQSKKL-----TRKKVLIVFDDVNHPR--QIKILVGRLDLLASGSRIIITT-R 332 (1134)
Q Consensus 266 ~~ll~~l~~-----~~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIiiTT-R 332 (1134)
+++...... +.......++ +..+.+.+ .+++-++|+|+++... ..+.|...+....+.+.+|++| +
T Consensus 88 ~~~~~g~~~n~~~~d~~s~~~vd~-Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~ 166 (620)
T PRK14954 88 RDFDAGTSLNISEFDAASNNSVDD-IRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTE 166 (620)
T ss_pred HHHhccCCCCeEEecccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 111000000 0000000111 11111222 2344478999997653 4666666665545566655544 4
Q ss_pred Chhhhhh-cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChH
Q 001161 333 DRQVLAN-CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPL 390 (1134)
Q Consensus 333 ~~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 390 (1134)
...+... ......+++.+++.++....+.+.+-... ..-..+.+..+++.++|..-
T Consensus 167 ~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg--i~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 167 LHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG--IQIDADALQLIARKAQGSMR 223 (620)
T ss_pred hhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCHH
Confidence 4444433 23456899999999998888776553221 11235667889999999654
No 146
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=97.79 E-value=4.2e-05 Score=73.76 Aligned_cols=88 Identities=22% Similarity=0.362 Sum_probs=46.7
Q ss_pred ccEEEcccccccccchHHHHHHHHhhC-------CCce----------EecC-CCCCCCcchHHHHHHHHhcccEEEEec
Q 001161 22 YDVFLSFRGEDTRENFTSHLYSALSRE-------SIET----------FIDD-DLRRGDEISQSLLDAIEASSISIIVFS 83 (1134)
Q Consensus 22 ~dvFis~~~~D~r~~~~~~l~~~l~~~-------g~~~----------~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S 83 (1134)
|.|||||++.|. ......|...+... .+.. +.+. +....+.|...|.++|..|.++||++|
T Consensus 1 ~~vFIS~~~~d~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDD-DWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------TH-H-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCc-HHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 579999999993 23677777777663 2211 1222 334456899999999999999999999
Q ss_pred CCcccchhhHHHHHHHHHhhhccCcEEEeEE
Q 001161 84 ERYASSRWCLDELLKILECKKEYAQIVIPAC 114 (1134)
Q Consensus 84 ~~y~~s~wc~~El~~~~~~~~~~~~~v~pvf 114 (1134)
++-..|+|+..|+..+++. +..||.|.
T Consensus 80 ~~T~~s~wV~~EI~~A~~~----~~~Ii~V~ 106 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALKK----GKPIIGVY 106 (130)
T ss_dssp TT----HHHHHHHHHHTTT-------EEEEE
T ss_pred CCcccCcHHHHHHHHHHHC----CCCEEEEE
Confidence 9999999999999988763 33455554
No 147
>PRK06620 hypothetical protein; Validated
Probab=97.78 E-value=0.00012 Score=76.97 Aligned_cols=134 Identities=10% Similarity=0.070 Sum_probs=78.3
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcC
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTR 295 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~ 295 (1134)
+.+.|||++|+|||+|++++++... ..++... ... . +.. +
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~-----~~~~~~~------~~~----~------------------------~~~-~ 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN-----AYIIKDI------FFN----E------------------------EIL-E 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC-----CEEcchh------hhc----h------------------------hHH-h
Confidence 5689999999999999998776532 1222100 000 0 001 1
Q ss_pred CcceEEEecCCChHH--HHHHhcCcCCCCCCcEEEEEeCChh-------hhhhcCCCeEEEecCCCHHhHHHHHHHhhcC
Q 001161 296 KKVLIVFDDVNHPRQ--IKILVGRLDLLASGSRIIITTRDRQ-------VLANCGVDEVYQMKELVHDDALRLFSRHAFE 366 (1134)
Q Consensus 296 k~~LlVLDdv~~~~~--l~~l~~~~~~~~~gsrIiiTTR~~~-------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~ 366 (1134)
..-++++||++...+ +-.+...+. ..|..||+|++... +.......-++++++++.++-.+++.+.+..
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 235788999975433 222222211 34668999887442 2222333458999999999988888777632
Q ss_pred CCCCCccHHHHHHHHHHHhcCChHHHH
Q 001161 367 GDHPHESHTELACKIIKYARGVPLALE 393 (1134)
Q Consensus 367 ~~~~~~~~~~~~~~i~~~~~GlPLal~ 393 (1134)
.. ..-.++...-|++++.|---.+.
T Consensus 163 ~~--l~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 163 SS--VTISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred cC--CCCCHHHHHHHHHHccCCHHHHH
Confidence 11 12225666777777766544433
No 148
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00042 Score=84.65 Aligned_cols=197 Identities=13% Similarity=0.083 Sum_probs=111.5
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQ 267 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 267 (1134)
|...+++||-+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+.......-+ ...+.....+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~--------~~c~~c~~c~~ 82 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG--------RPCGTCEMCRA 82 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--------CCCccCHHHHH
Confidence 4456789999999999988886442 23567899999999999999999876321100000 00000111111
Q ss_pred HHHHHhcC-----CCCCCCccccHHHHHHhh-----cCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeCCh-
Q 001161 268 LLSTLLND-----GNVKNFPNIDLNFQSKKL-----TRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTRDR- 334 (1134)
Q Consensus 268 ll~~l~~~-----~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR~~- 334 (1134)
+......+ .......+. ++.+.+.+ ..++-++|+|+++.. +..+.|...+........+|++|.+.
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~ 161 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVH 161 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChh
Confidence 11100000 000000011 11111211 234568999999754 44666666555545666776666443
Q ss_pred hhhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHH
Q 001161 335 QVLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLG 396 (1134)
Q Consensus 335 ~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 396 (1134)
.+.... .....+++..++.++....+.+.+..... ....+.+..+++.++|.+..+...-
T Consensus 162 kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl--~i~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 162 KVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI--NLEPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 333221 22357889999999998888877643221 1224667889999999886555443
No 149
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00062 Score=80.63 Aligned_cols=196 Identities=13% Similarity=0.112 Sum_probs=108.4
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc---C--CceeeeeechhHhhcCCHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH---F--AGSFFARNVREAEETGRLG 262 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---f--~~~~~~~~~~~~~~~~~~~ 262 (1134)
|....+++|-+..++.+...+..+. -.+...++|+.|+||||+|+.++..+... . ++.. ..+....... ...
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~-c~nc~~i~~g-~~~ 88 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK-CENCVEIDKG-SFP 88 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc-cHHHHHHhcC-CCC
Confidence 4456679999999999999986532 23557789999999999999999865311 0 0000 0000000000 000
Q ss_pred HHHHHHHHHHhcCCCCCCCccccHHHHHHhh-----cCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEe-CCh
Q 001161 263 DLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL-----TRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITT-RDR 334 (1134)
Q Consensus 263 ~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTT-R~~ 334 (1134)
++. .+ +.......+ .++.+.+.. .+++-++|+|+++.. +..+.|...+....+...+|++| +..
T Consensus 89 d~~-----ei--daas~~gvd-~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~ 160 (486)
T PRK14953 89 DLI-----EI--DAASNRGID-DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYD 160 (486)
T ss_pred cEE-----EE--eCccCCCHH-HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHH
Confidence 000 00 000000000 011222221 245569999999755 34566666555545566666555 333
Q ss_pred hhhhh-cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHH
Q 001161 335 QVLAN-CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLG 396 (1134)
Q Consensus 335 ~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 396 (1134)
.+... ......+++.+++.++....+...+-.... ....+.+..+++.++|.+..+....
T Consensus 161 kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 161 KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred HHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33322 122357899999999998888876632221 2224567788889999776544433
No 150
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.75 E-value=0.00059 Score=79.93 Aligned_cols=151 Identities=12% Similarity=0.119 Sum_probs=85.6
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcC
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTR 295 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~ 295 (1134)
.-+.|+|+.|+|||+||+++++.+......+.|+. ...+..++...+... ....++..++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~----------~~~f~~~~~~~l~~~---------~~~~f~~~~~- 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR----------SELFTEHLVSAIRSG---------EMQRFRQFYR- 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee----------HHHHHHHHHHHHhcc---------hHHHHHHHcc-
Confidence 45889999999999999999998765544455552 112223333333211 1223343333
Q ss_pred CcceEEEecCCChH----HHHHHhcCcCC-CCCCcEEEEEeCC-hhh--------hhhcCCCeEEEecCCCHHhHHHHHH
Q 001161 296 KKVLIVFDDVNHPR----QIKILVGRLDL-LASGSRIIITTRD-RQV--------LANCGVDEVYQMKELVHDDALRLFS 361 (1134)
Q Consensus 296 k~~LlVLDdv~~~~----~l~~l~~~~~~-~~~gsrIiiTTR~-~~~--------~~~~~~~~~~~l~~L~~~ea~~Lf~ 361 (1134)
+.-++++||+.... ..+.+...++. ...|..||+||.. +.. ...+....++++.+++.++-.+++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 44588899985431 12222222111 1245678888754 221 2222334578999999999999998
Q ss_pred HhhcCCCCCCccHHHHHHHHHHHhcCC
Q 001161 362 RHAFEGDHPHESHTELACKIIKYARGV 388 (1134)
Q Consensus 362 ~~af~~~~~~~~~~~~~~~i~~~~~Gl 388 (1134)
+++-... ..-..+...-+++...|.
T Consensus 282 ~k~~~~~--~~l~~evl~~la~~~~~d 306 (445)
T PRK12422 282 RKAEALS--IRIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHcC--CCCCHHHHHHHHHhcCCC
Confidence 8774322 112244555566655544
No 151
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00071 Score=82.41 Aligned_cols=197 Identities=15% Similarity=0.109 Sum_probs=109.8
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccC-CceeeeeechhHhhcCCHHHHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF-AGSFFARNVREAEETGRLGDLRQ 266 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~ 266 (1134)
|.....++|.+...+.|..++..+. -.+.+.++|+.|+||||+|+.++..+-... ..... ...+.....+
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~--------~~Cg~C~~C~ 82 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTP--------EPCGKCELCR 82 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCC--------CCCcccHHHH
Confidence 3456789999999999999887542 235678999999999999999998763321 10000 0000011111
Q ss_pred HHHHHHhcCCC-CCCCccccHHHHHHh---h-----cCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeCCh-
Q 001161 267 QLLSTLLNDGN-VKNFPNIDLNFQSKK---L-----TRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTRDR- 334 (1134)
Q Consensus 267 ~ll~~l~~~~~-~~~~~~~~~~~l~~~---L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR~~- 334 (1134)
.+......+.. ........++.+++. + .+++-++|+|+++.. +..+.|+..+........+|++|.+.
T Consensus 83 ~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~ 162 (620)
T PRK14948 83 AIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQ 162 (620)
T ss_pred HHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChh
Confidence 11110000000 000000111222211 1 234458899999754 44666766665444556555555443
Q ss_pred hhhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHH
Q 001161 335 QVLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVL 395 (1134)
Q Consensus 335 ~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 395 (1134)
.++... .....+++..++.++....+.+.+-+... ....+.+..+++.++|.+..+..+
T Consensus 163 ~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi--~is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 163 RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI--EIEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 333322 23457888999999988877776633211 112356788999999987655443
No 152
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00021 Score=77.25 Aligned_cols=151 Identities=17% Similarity=0.252 Sum_probs=94.0
Q ss_pred CCccccchhHHHHHHhhccC-----------CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCC
Q 001161 192 EDLVGVRLPMKEIESLLRTG-----------STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGR 260 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 260 (1134)
.++=|.+..+++|.+..... -...+-|.+||++|.|||-||++|+++....| +..+.
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----Irvvg------- 218 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVG------- 218 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEecc-------
Confidence 34556777777777665432 13455689999999999999999999865444 32221
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccccHHHHHHhh----cCCcceEEEecCCChH--------------H--HHHHhcCcCC
Q 001161 261 LGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL----TRKKVLIVFDDVNHPR--------------Q--IKILVGRLDL 320 (1134)
Q Consensus 261 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L----~~k~~LlVLDdv~~~~--------------~--l~~l~~~~~~ 320 (1134)
..-+++-+ + ++.+.+++.+ ...+..|.+|.++... | +-.|+..++.
T Consensus 219 SElVqKYi-----G---------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG 284 (406)
T COG1222 219 SELVQKYI-----G---------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG 284 (406)
T ss_pred HHHHHHHh-----c---------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC
Confidence 11111111 1 1233333332 2468999999886431 1 4456666665
Q ss_pred CCC--CcEEEEEeCChhhhhh-----cCCCeEEEecCCCHHhHHHHHHHhhcCCC
Q 001161 321 LAS--GSRIIITTRDRQVLAN-----CGVDEVYQMKELVHDDALRLFSRHAFEGD 368 (1134)
Q Consensus 321 ~~~--gsrIiiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~ 368 (1134)
|.+ ..+||..|...+++.. -..++.++++.-+.+.-.++|.-|+-+-.
T Consensus 285 FD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~ 339 (406)
T COG1222 285 FDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN 339 (406)
T ss_pred CCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhcc
Confidence 554 4688988876655432 24577899997777777788888885443
No 153
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.69 E-value=0.0017 Score=68.00 Aligned_cols=56 Identities=16% Similarity=0.333 Sum_probs=41.8
Q ss_pred CCccCCccccchhHHHHHHhhcc--CCCCeeEEEEEecCCChHHHHHHHHHHHHhccC
Q 001161 188 QSENEDLVGVRLPMKEIESLLRT--GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF 243 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1134)
+...+.++|.|.+.+.|.+-... .+....-|.+||..|.|||++++++.+++..+-
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 44567899999999888753221 123345688899999999999999998876544
No 154
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.69 E-value=0.00072 Score=75.66 Aligned_cols=172 Identities=16% Similarity=0.223 Sum_probs=106.1
Q ss_pred CccCCccccchhHHHHHHhhcc--CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCc--eeeeeechhHhhcCCHHHH
Q 001161 189 SENEDLVGVRLPMKEIESLLRT--GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAG--SFFARNVREAEETGRLGDL 264 (1134)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l 264 (1134)
..+..++||+.++..+.+++.. +.+..+-+-|.|-+|.|||.+...++.+....... .+++.... -.....+
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~s----l~~~~ai 222 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTS----LTEASAI 222 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecc----ccchHHH
Confidence 3566899999999999999865 33455678999999999999999999876554443 35553321 1234456
Q ss_pred HHHHHHHHhcCCCCCCCccccHHHHHHhhcC--CcceEEEecCCChHH--HHHHhcCcCCC-CCCcEEEEEeCCh-----
Q 001161 265 RQQLLSTLLNDGNVKNFPNIDLNFQSKKLTR--KKVLIVFDDVNHPRQ--IKILVGRLDLL-ASGSRIIITTRDR----- 334 (1134)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~--k~~LlVLDdv~~~~~--l~~l~~~~~~~-~~gsrIiiTTR~~----- 334 (1134)
...+.+.+..+........+....+....++ ..+|+|+|..|.... -..+...+.|. -+++|+|+.---.
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlT 302 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLT 302 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHH
Confidence 6666666644433332223334444455544 358999999876542 11222222222 3566665432111
Q ss_pred -hhhhhcC-----CCeEEEecCCCHHhHHHHHHHhh
Q 001161 335 -QVLANCG-----VDEVYQMKELVHDDALRLFSRHA 364 (1134)
Q Consensus 335 -~~~~~~~-----~~~~~~l~~L~~~ea~~Lf~~~a 364 (1134)
..+.... ....+..++.+.++-.+++..+.
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 1111111 23567889999999999999887
No 155
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.0017 Score=79.19 Aligned_cols=180 Identities=17% Similarity=0.185 Sum_probs=107.8
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc-----------------------CC
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH-----------------------FA 244 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----------------------f~ 244 (1134)
|...++++|.+...+.|...+..+. -.+.+.++|+.|+||||+|+.++..+-.. |+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 4456789999999999999886432 23568899999999999999998865311 11
Q ss_pred ceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh--HHHHHHhcCcCCCC
Q 001161 245 GSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP--RQIKILVGRLDLLA 322 (1134)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~ 322 (1134)
.. .+ ......+..++. +++.++... -..+++=++|+|+++.. ...+.|...+....
T Consensus 92 ~~-~l----d~~~~~~vd~Ir-~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 92 IH-EL----DAASNNSVDDIR-NLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred eE-Ee----cccccCCHHHHH-HHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 00 00 000011111111 111111000 01223448899998765 34666666665555
Q ss_pred CCcEEEEEe-CChhhhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHH
Q 001161 323 SGSRIIITT-RDRQVLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLAL 392 (1134)
Q Consensus 323 ~gsrIiiTT-R~~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 392 (1134)
..+.+|++| +...+.... ....++++.+++.++....+.+.+-... .....+.+..|++.++|..--+
T Consensus 150 ~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg--i~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG--ITAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 667766544 445554432 2346799999999999988887663322 1222456788899999866433
No 156
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.67 E-value=5e-05 Score=84.61 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=60.7
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhc-cCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCc------cccH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISR-HFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFP------NIDL 286 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~------~~~~ 286 (1134)
.-+..+|+|+||+||||||+++|+.+.. +|+..+|+..+++.. ..+.++++++...+.......... ....
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~--~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERP--EEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCch--hHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 4466899999999999999999997754 699999997765522 356677777764332221111100 0111
Q ss_pred HHHHHh-hcCCcceEEEecCCChHH
Q 001161 287 NFQSKK-LTRKKVLIVFDDVNHPRQ 310 (1134)
Q Consensus 287 ~~l~~~-L~~k~~LlVLDdv~~~~~ 310 (1134)
+.-+.. ..++.++|++|++.....
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR~ar 270 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITRLAR 270 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHHHHH
Confidence 111111 356899999999865543
No 157
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.66 E-value=3.3e-06 Score=78.05 Aligned_cols=61 Identities=26% Similarity=0.340 Sum_probs=44.3
Q ss_pred CCCCCCEEeccCCCCCCCccccccccCcceeecCCCCccccccchhCCCCCcEEEeccccC
Q 001161 820 GLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPESIIQLSNLEWLFIRYCER 880 (1134)
Q Consensus 820 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~ 880 (1134)
.++.++.|+|++|.|+++|..+..++.|+.|+++.|.+...|..+..|.+|-.|+..+|..
T Consensus 75 kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 75 KFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred ccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence 3456677777777777777777777777888887777777777776677777777666543
No 158
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.66 E-value=0.0013 Score=79.27 Aligned_cols=190 Identities=13% Similarity=0.141 Sum_probs=110.5
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc-----CCceeeeeechhHhhcCCHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH-----FAGSFFARNVREAEETGRLG 262 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~ 262 (1134)
|....+++|-+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+-.. .++. .....+.......+
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~-~C~~C~~i~~~~~~- 88 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG-ECSSCKSIDNDNSL- 88 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc-cchHHHHHHcCCCC-
Confidence 4566789999999999999987532 34568899999999999999999865321 1100 00000000000000
Q ss_pred HHHHHHHHHHhcCCCCCCCccccHHHHHHh--------hcCCcceEEEecCCChH--HHHHHhcCcCCCCCCcEEEEEeC
Q 001161 263 DLRQQLLSTLLNDGNVKNFPNIDLNFQSKK--------LTRKKVLIVFDDVNHPR--QIKILVGRLDLLASGSRIIITTR 332 (1134)
Q Consensus 263 ~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~--------L~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIiiTTR 332 (1134)
++. .+ + .......+.+++. ..+++-++|+|+++... .++.|...+....+...+|++|.
T Consensus 89 dv~-----~i--d----gas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tt 157 (563)
T PRK06647 89 DVI-----EI--D----GASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATT 157 (563)
T ss_pred CeE-----Ee--c----CcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecC
Confidence 000 00 0 0000111111111 12455589999997553 46777777665556677666654
Q ss_pred C-hhhhhh-cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHH
Q 001161 333 D-RQVLAN-CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALE 393 (1134)
Q Consensus 333 ~-~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 393 (1134)
+ ..+... ......+++.+++.++..+.+...+..... .-..+.+..|++.++|.+-.+.
T Consensus 158 e~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi--~id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 158 EVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI--KYEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred ChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 4 333322 123357899999999998888876643322 2235667788899999775443
No 159
>CHL00176 ftsH cell division protein; Validated
Probab=97.65 E-value=0.00082 Score=81.90 Aligned_cols=173 Identities=17% Similarity=0.180 Sum_probs=97.9
Q ss_pred ccCCccccchhHHHHHHhhcc---C-------CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcC
Q 001161 190 ENEDLVGVRLPMKEIESLLRT---G-------STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETG 259 (1134)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 259 (1134)
..+++.|.+...+++.+.+.. . ....+-|.++|++|.|||++|++++......| +.+. .
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~---i~is-~------- 249 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF---FSIS-G------- 249 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe---eecc-H-------
Confidence 345688888777776655422 1 12234689999999999999999998653222 1110 0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH----------------HHHHHhcCcCCC--
Q 001161 260 RLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR----------------QIKILVGRLDLL-- 321 (1134)
Q Consensus 260 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~-- 321 (1134)
.++..... + .........+.......+.+|+|||++... .+..+...++.+
T Consensus 250 --s~f~~~~~----g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 250 --SEFVEMFV----G-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred --HHHHHHhh----h-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 00100000 0 000111223334445678999999996431 133444333322
Q ss_pred CCCcEEEEEeCChhhhhh-----cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcC
Q 001161 322 ASGSRIIITTRDRQVLAN-----CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARG 387 (1134)
Q Consensus 322 ~~gsrIiiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~G 387 (1134)
..+..||.||.....+.. ...+..+.++..+.++-.+++..++-.... ........+++.+.|
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~---~~d~~l~~lA~~t~G 386 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL---SPDVSLELIARRTPG 386 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc---chhHHHHHHHhcCCC
Confidence 345567777766544332 124567899999999999999988743211 112334567777776
No 160
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.0037 Score=69.91 Aligned_cols=193 Identities=11% Similarity=0.109 Sum_probs=108.3
Q ss_pred CCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhc---------------cCCceeeeeechhHh
Q 001161 192 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISR---------------HFAGSFFARNVREAE 256 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~---------------~f~~~~~~~~~~~~~ 256 (1134)
++++|.+...+.+...+..+. -.+...++|+.|+||+++|.++++.+-. .++...|+......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 468999999999999886542 2367899999999999999999886522 12223333211000
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC--CCCccccHHHHHHhh-----cCCcceEEEecCCChH--HHHHHhcCcCCCCCCcEE
Q 001161 257 ETGRLGDLRQQLLSTLLNDGNV--KNFPNIDLNFQSKKL-----TRKKVLIVFDDVNHPR--QIKILVGRLDLLASGSRI 327 (1134)
Q Consensus 257 ~~~~~~~l~~~ll~~l~~~~~~--~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrI 327 (1134)
+..... ..-+......... ....+ .++.+.+.+ .+++-++|+|+++... ....|+..+.... .+.+
T Consensus 82 ~g~~~~---~~~~~~~~~~~~~~~~I~id-~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 82 QGKLIT---ASEAEEAGLKRKAPPQIRLE-QIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred cccccc---hhhhhhccccccccccCcHH-HHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 000000 0000000000000 00011 122233333 2455688999987553 4556665554444 4455
Q ss_pred EEEe-CChhhhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHH
Q 001161 328 IITT-RDRQVLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLG 396 (1134)
Q Consensus 328 iiTT-R~~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 396 (1134)
|++| +...+++.. .....+++.+++.++..+.+...... .. .......++..++|.|..+..+.
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~--~~---~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE--EI---LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc--cc---chhHHHHHHHHcCCCHHHHHHHH
Confidence 5544 444444433 33468899999999999999876421 11 11123578899999997665543
No 161
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.64 E-value=0.0018 Score=76.47 Aligned_cols=175 Identities=14% Similarity=0.117 Sum_probs=92.7
Q ss_pred cCCccccchhHHHHHHhhc---c-----CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHH
Q 001161 191 NEDLVGVRLPMKEIESLLR---T-----GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLG 262 (1134)
Q Consensus 191 ~~~~vGr~~~~~~l~~~L~---~-----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 262 (1134)
.+++.|.+...+.+..... . +-...+-|.++|++|.|||.+|++++..+...| +..+....
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l------- 295 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKL------- 295 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHh-------
Confidence 3567788766665554211 1 113346689999999999999999998764332 11111110
Q ss_pred HHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH--------------HHHHHhcCcCCCCCCcEEE
Q 001161 263 DLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR--------------QIKILVGRLDLLASGSRII 328 (1134)
Q Consensus 263 ~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--------------~l~~l~~~~~~~~~gsrIi 328 (1134)
.....+ .........+...-...+++|++|+++..- .+..+...+.....+.-||
T Consensus 296 ------~~~~vG-----ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI 364 (489)
T CHL00195 296 ------FGGIVG-----ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV 364 (489)
T ss_pred ------cccccC-----hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence 000000 000001111111223478999999986421 0112222222223444566
Q ss_pred EEeCChhhhh-----hcCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCC
Q 001161 329 ITTRDRQVLA-----NCGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGV 388 (1134)
Q Consensus 329 iTTR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl 388 (1134)
.||.+...+. ....+..+.++..+.++-.++|..+..+..... ........+++.+.|.
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~-~~~~dl~~La~~T~Gf 428 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKS-WKKYDIKKLSKLSNKF 428 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCc-ccccCHHHHHhhcCCC
Confidence 6776654322 123467889999999999999998874432111 0012244566666664
No 162
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.64 E-value=0.0011 Score=78.85 Aligned_cols=155 Identities=12% Similarity=0.187 Sum_probs=89.4
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccCC--ceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhh
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHFA--GSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL 293 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L 293 (1134)
..+.|+|..|.|||.|++++++.+...+. .+.|+. ..++..++...+... ....+++.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~~---------~~~~f~~~y 375 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRDG---------KGDSFRRRY 375 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHhc---------cHHHHHHHh
Confidence 44899999999999999999998765442 334442 122333333332211 122333444
Q ss_pred cCCcceEEEecCCCh---HHH-HHHhcCcCCC-CCCcEEEEEeCCh---------hhhhhcCCCeEEEecCCCHHhHHHH
Q 001161 294 TRKKVLIVFDDVNHP---RQI-KILVGRLDLL-ASGSRIIITTRDR---------QVLANCGVDEVYQMKELVHDDALRL 359 (1134)
Q Consensus 294 ~~k~~LlVLDdv~~~---~~l-~~l~~~~~~~-~~gsrIiiTTR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L 359 (1134)
++ .=+|||||+... +.+ +.+...++.. ..|..|||||+.. .+...+...-+++|+..+.+.-.++
T Consensus 376 ~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 376 RE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred hc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 33 358889999543 111 2222222111 3456688888753 2222333456889999999999999
Q ss_pred HHHhhcCCCCCCccHHHHHHHHHHHhcCChHHH
Q 001161 360 FSRHAFEGDHPHESHTELACKIIKYARGVPLAL 392 (1134)
Q Consensus 360 f~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 392 (1134)
+.+++.... ..-..+++.-|++.+.+..-.|
T Consensus 455 L~kka~~r~--l~l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 455 LRKKAVQEQ--LNAPPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHHhcC--CCCCHHHHHHHHHhccCCHHHH
Confidence 998874322 1222566666666666554333
No 163
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.60 E-value=0.00057 Score=87.03 Aligned_cols=168 Identities=13% Similarity=0.108 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhhccccCCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc-C-----C
Q 001161 171 LIEEIVNAILKRVDDTFQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH-F-----A 244 (1134)
Q Consensus 171 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-----~ 244 (1134)
.+++...++..+-.. ...+.++||+.+++.+.+.|..... .-+.++|++|+|||++|+.++.++... - .
T Consensus 161 ~l~~~~~~l~~~a~~---~~~~~~igr~~ei~~~~~~L~r~~~--~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~ 235 (821)
T CHL00095 161 TLEEFGTNLTKEAID---GNLDPVIGREKEIERVIQILGRRTK--NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILED 235 (821)
T ss_pred HHHHHHHHHHHHHHc---CCCCCCCCcHHHHHHHHHHHccccc--CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcC
Confidence 455555555444221 2345689999999999999975432 346799999999999999999877532 1 1
Q ss_pred ceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHH-hhcCCcceEEEecCCChH---------HHHHH
Q 001161 245 GSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSK-KLTRKKVLIVFDDVNHPR---------QIKIL 314 (1134)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVLDdv~~~~---------~l~~l 314 (1134)
..+|..+...... +... ....++.+..+.+ .-..++++|++|+++... +...+
T Consensus 236 ~~i~~l~~~~l~a----------------g~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~l 298 (821)
T CHL00095 236 KLVITLDIGLLLA----------------GTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANI 298 (821)
T ss_pred CeEEEeeHHHHhc----------------cCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHH
Confidence 3344332211110 0000 0111111222222 223467899999985321 12222
Q ss_pred -hcCcCCCCCCcEEEEEeCChhhhhh-------cCCCeEEEecCCCHHhHHHHHHH
Q 001161 315 -VGRLDLLASGSRIIITTRDRQVLAN-------CGVDEVYQMKELVHDDALRLFSR 362 (1134)
Q Consensus 315 -~~~~~~~~~gsrIiiTTR~~~~~~~-------~~~~~~~~l~~L~~~ea~~Lf~~ 362 (1134)
.+.+. ...-++|.+|........ ......++++..+.++...++..
T Consensus 299 Lkp~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 299 LKPALA--RGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred hHHHHh--CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 22221 122455655554432111 11235678899999998888764
No 164
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.60 E-value=0.0011 Score=84.49 Aligned_cols=170 Identities=12% Similarity=0.108 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhhccccCCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccC------C
Q 001161 171 LIEEIVNAILKRVDDTFQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF------A 244 (1134)
Q Consensus 171 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~ 244 (1134)
.+++...++..+.. +...+.++||+.+++.+...|..... .-+.++|.+|+|||+||+.++.++.... .
T Consensus 160 ~l~~~~~~l~~~~r---~~~l~~vigr~~ei~~~i~iL~r~~~--~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~ 234 (857)
T PRK10865 160 ALKKYTIDLTERAE---QGKLDPVIGRDEEIRRTIQVLQRRTK--NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKG 234 (857)
T ss_pred HHHHHhhhHHHHHh---cCCCCcCCCCHHHHHHHHHHHhcCCc--CceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCC
Confidence 44444444444333 33456799999999999999875432 3467999999999999999999875432 2
Q ss_pred ceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhh--cCCcceEEEecCCChH---------HHHH
Q 001161 245 GSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL--TRKKVLIVFDDVNHPR---------QIKI 313 (1134)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVLDdv~~~~---------~l~~ 313 (1134)
..+|..+......... .....+.....+.+.+ ..++++|++|+++... +...
T Consensus 235 ~~~~~l~l~~l~ag~~-----------------~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~ 297 (857)
T PRK10865 235 RRVLALDMGALVAGAK-----------------YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGN 297 (857)
T ss_pred CEEEEEehhhhhhccc-----------------hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHH
Confidence 2333322221110000 0001111111111211 2468999999986542 1223
Q ss_pred -HhcCcCCCCCCcEEEEEeCChhhhhh-------cCCCeEEEecCCCHHhHHHHHHHhh
Q 001161 314 -LVGRLDLLASGSRIIITTRDRQVLAN-------CGVDEVYQMKELVHDDALRLFSRHA 364 (1134)
Q Consensus 314 -l~~~~~~~~~gsrIiiTTR~~~~~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1134)
|.+.+. ...-++|-+|........ ...-..+.+...+.++..+++....
T Consensus 298 ~lkp~l~--~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 298 MLKPALA--RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred Hhcchhh--cCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 333321 223455555544432110 1122356788889999999886543
No 165
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.56 E-value=0.0018 Score=78.44 Aligned_cols=192 Identities=16% Similarity=0.111 Sum_probs=107.6
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccC-CceeeeeechhHhhcCCHHHHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF-AGSFFARNVREAEETGRLGDLRQ 266 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~ 266 (1134)
|...++++|.+...+.+...+..+. -.+.+.++|+.|+||||+|+.++..+-..- ...- ..+.....+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~----------pC~~C~~C~ 80 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGE----------PCNECEICK 80 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC----------CCCccHHHH
Confidence 4566789999999999999987543 346678899999999999999987653110 0000 000000001
Q ss_pred HHHHHHhcCCC-CCCCccccHH---HHHHh-----hcCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEe-CCh
Q 001161 267 QLLSTLLNDGN-VKNFPNIDLN---FQSKK-----LTRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITT-RDR 334 (1134)
Q Consensus 267 ~ll~~l~~~~~-~~~~~~~~~~---~l~~~-----L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTT-R~~ 334 (1134)
.+......+-. .........+ .+.+. ..+++-++|+|+++.. .....|...+........+|++| ...
T Consensus 81 ~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ 160 (559)
T PRK05563 81 AITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160 (559)
T ss_pred HHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChh
Confidence 11000000000 0000001111 22222 1235568899999855 44667776655444555555544 443
Q ss_pred hhhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHH
Q 001161 335 QVLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLAL 392 (1134)
Q Consensus 335 ~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 392 (1134)
.+.... .....+++.+++.++..+.+...+-+.... -..+.+..+++.++|.+..+
T Consensus 161 ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~--i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIE--YEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 333321 234578899999999988888766332211 12456778888888876543
No 166
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.55 E-value=0.002 Score=71.28 Aligned_cols=128 Identities=13% Similarity=0.126 Sum_probs=71.0
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhccC--CceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhc
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKISRHF--AGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLT 294 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~ 294 (1134)
-+.++|++|.|||++|+.++..+...- ....|+... ..+ +...+.++. .......+.+ .
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~--------~~~----l~~~~~g~~-----~~~~~~~~~~-a- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT--------RDD----LVGQYIGHT-----APKTKEILKR-A- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec--------HHH----HhHhhcccc-----hHHHHHHHHH-c-
Confidence 588999999999999999988654321 111233111 011 111111111 0011111221 1
Q ss_pred CCcceEEEecCCCh-----------HHHHHHhcCcCCCCCCcEEEEEeCChhhhhhc--------CCCeEEEecCCCHHh
Q 001161 295 RKKVLIVFDDVNHP-----------RQIKILVGRLDLLASGSRIIITTRDRQVLANC--------GVDEVYQMKELVHDD 355 (1134)
Q Consensus 295 ~k~~LlVLDdv~~~-----------~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~--------~~~~~~~l~~L~~~e 355 (1134)
..-+|+||+++.. +..+.|...+.....+.+||.++.....-... .....+++++++.+|
T Consensus 121 -~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 121 -MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred -cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 3358899999632 22445555554444566777776543221111 123578999999999
Q ss_pred HHHHHHHhh
Q 001161 356 ALRLFSRHA 364 (1134)
Q Consensus 356 a~~Lf~~~a 364 (1134)
-.+++...+
T Consensus 200 l~~I~~~~l 208 (284)
T TIGR02880 200 LLVIAGLML 208 (284)
T ss_pred HHHHHHHHH
Confidence 999988876
No 167
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.53 E-value=3e-05 Score=95.07 Aligned_cols=151 Identities=22% Similarity=0.222 Sum_probs=93.9
Q ss_pred CCCCeeeccCCcCCcc-cCccc-CCCCCCcEEeecCCCCCC-CCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEE
Q 001161 726 SKLSRLDLADCKSLKS-LPSGL-CKLKSLDVLNIDGCSNLQ-RLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAI 802 (1134)
Q Consensus 726 ~~L~~L~L~~n~~~~~-lp~~l-~~l~~L~~L~L~~~~~~~-~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L 802 (1134)
.+|++|++++...... .|..+ ..||+|+.|.+++-.+.. .+.....++++|..||+++++++.+ .+++++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 4677777777543321 11122 247888888888744432 2344456778888888888888877 677888888888
Q ss_pred EecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCc-------cccccccCcceeecCCCCcc--ccccchhCCCCCcEE
Q 001161 803 YFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELP-------ESLGLLSLVTELHLEGNNFE--RIPESIIQLSNLEWL 873 (1134)
Q Consensus 803 ~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp-------~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L 873 (1134)
.+.+-...+...-..+-++++|+.||+|.......+ +.-..+|.|+.||.|++.+. .+...+..-++|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 887544333233335567888888888876554322 22234788888888888776 222333445555555
Q ss_pred Eecc
Q 001161 874 FIRY 877 (1134)
Q Consensus 874 ~Ls~ 877 (1134)
.+-+
T Consensus 281 ~~~~ 284 (699)
T KOG3665|consen 281 AALD 284 (699)
T ss_pred hhhh
Confidence 4443
No 168
>PRK08116 hypothetical protein; Validated
Probab=97.52 E-value=0.00047 Score=75.30 Aligned_cols=102 Identities=25% Similarity=0.333 Sum_probs=57.0
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcC
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTR 295 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~ 295 (1134)
..+.++|.+|+|||.||.++++.+..+...++|+. ...+...+........ ......+.+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~~~~~------~~~~~~~~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTYKSSG------KEDENEIIRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhccc------cccHHHHHHHhcC
Confidence 45899999999999999999998876644455552 2223333333221111 1112233444554
Q ss_pred CcceEEEecCC--ChHH--HHHHhcCcCC-CCCCcEEEEEeCCh
Q 001161 296 KKVLIVFDDVN--HPRQ--IKILVGRLDL-LASGSRIIITTRDR 334 (1134)
Q Consensus 296 k~~LlVLDdv~--~~~~--l~~l~~~~~~-~~~gsrIiiTTR~~ 334 (1134)
-. ||||||+. ...+ .+.+...++. ...+..+||||...
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 44 89999993 2222 2223222221 13556788888643
No 169
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.52 E-value=0.0033 Score=68.80 Aligned_cols=166 Identities=19% Similarity=0.264 Sum_probs=100.1
Q ss_pred cCCccccchhHHHHHHhhccCCCCe-eEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHH
Q 001161 191 NEDLVGVRLPMKEIESLLRTGSTNV-YKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLL 269 (1134)
Q Consensus 191 ~~~~vGr~~~~~~l~~~L~~~~~~~-~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll 269 (1134)
.+.+.+|+.++..+..++...+..+ .+|.|+|-.|.|||.+.+++++.... ..+|+.. -+.+....+.++++
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n~----~ecft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLNC----VECFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeeeh----HHhccHHHHHHHHH
Confidence 4578899999999999997665534 44589999999999999999987632 3477744 34556677777777
Q ss_pred HHHh-cCCCCC---C---CccccHHHHHH--hhc--CCcceEEEecCCChHHHHH-----HhcCcCCCCCCcEEEEEeCC
Q 001161 270 STLL-NDGNVK---N---FPNIDLNFQSK--KLT--RKKVLIVFDDVNHPRQIKI-----LVGRLDLLASGSRIIITTRD 333 (1134)
Q Consensus 270 ~~l~-~~~~~~---~---~~~~~~~~l~~--~L~--~k~~LlVLDdv~~~~~l~~-----l~~~~~~~~~gsrIiiTTR~ 333 (1134)
.+.. .+.+.. . +....+..+.+ ... ++.++||||+++...+.++ +...........-.|+++-.
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~ 157 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAP 157 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecc
Confidence 7764 222211 1 01111222222 122 4689999999987655322 21111111222334444433
Q ss_pred hhh---hhhcCCCe--EEEecCCCHHhHHHHHHHh
Q 001161 334 RQV---LANCGVDE--VYQMKELVHDDALRLFSRH 363 (1134)
Q Consensus 334 ~~~---~~~~~~~~--~~~l~~L~~~ea~~Lf~~~ 363 (1134)
... ....|... ++..+.-+.+|..+++.+.
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 321 22234333 4567889999999988763
No 170
>CHL00181 cbbX CbbX; Provisional
Probab=97.51 E-value=0.0025 Score=70.36 Aligned_cols=130 Identities=12% Similarity=0.139 Sum_probs=72.2
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhcc-C-CceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhh
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRH-F-AGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL 293 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L 293 (1134)
..+.++|++|.||||+|+.++..+... + ...-|+... ...+ .....++. .......+.+ .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~--------~~~l----~~~~~g~~-----~~~~~~~l~~-a 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT--------RDDL----VGQYIGHT-----APKTKEVLKK-A 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec--------HHHH----HHHHhccc-----hHHHHHHHHH-c
Confidence 458899999999999999998865321 1 111122111 1111 11111111 0000111221 1
Q ss_pred cCCcceEEEecCCCh-----------HHHHHHhcCcCCCCCCcEEEEEeCChhhhhh--------cCCCeEEEecCCCHH
Q 001161 294 TRKKVLIVFDDVNHP-----------RQIKILVGRLDLLASGSRIIITTRDRQVLAN--------CGVDEVYQMKELVHD 354 (1134)
Q Consensus 294 ~~k~~LlVLDdv~~~-----------~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~~--------~~~~~~~~l~~L~~~ 354 (1134)
..-+|++|+++.. +..+.|...+.....+.+||+++....+... -.....+++++++.+
T Consensus 122 --~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~ 199 (287)
T CHL00181 122 --MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPE 199 (287)
T ss_pred --cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHH
Confidence 2348999999642 3345555555444455677777754332111 023457899999999
Q ss_pred hHHHHHHHhhc
Q 001161 355 DALRLFSRHAF 365 (1134)
Q Consensus 355 ea~~Lf~~~af 365 (1134)
|..+++...+-
T Consensus 200 el~~I~~~~l~ 210 (287)
T CHL00181 200 ELLQIAKIMLE 210 (287)
T ss_pred HHHHHHHHHHH
Confidence 99999888774
No 171
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.002 Score=72.44 Aligned_cols=92 Identities=11% Similarity=0.190 Sum_probs=61.5
Q ss_pred ceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeCChh-hhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCcc
Q 001161 298 VLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTRDRQ-VLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHES 373 (1134)
Q Consensus 298 ~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~ 373 (1134)
=++|+|+++.. +....|+..+....+++.+|+||.+.. ++... ..-..+.+.+++.+++.+.+.... . . .
T Consensus 108 kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~-~----~ 181 (328)
T PRK05707 108 KVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-P-E----S 181 (328)
T ss_pred eEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-c-c----C
Confidence 34567999754 446667666665567788887777663 33332 234678999999999999887653 1 1 1
Q ss_pred HHHHHHHHHHHhcCChHHHHHH
Q 001161 374 HTELACKIIKYARGVPLALEVL 395 (1134)
Q Consensus 374 ~~~~~~~i~~~~~GlPLal~~~ 395 (1134)
..+.+..++..++|.|+....+
T Consensus 182 ~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ChHHHHHHHHHcCCCHHHHHHH
Confidence 1344567788999999765544
No 172
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.50 E-value=9.8e-05 Score=55.64 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=32.4
Q ss_pred cCcceeecCCCCccccccchhCCCCCcEEEeccccCC
Q 001161 845 SLVTELHLEGNNFERIPESIIQLSNLEWLFIRYCERL 881 (1134)
Q Consensus 845 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l 881 (1134)
++|++|+|++|+|+.+|..+.+|++|+.|++++|++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 4799999999999999988999999999999999754
No 173
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.50 E-value=0.0012 Score=84.36 Aligned_cols=154 Identities=13% Similarity=0.115 Sum_probs=86.9
Q ss_pred CccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccC------CceeeeeechhHhhcCCHH
Q 001161 189 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF------AGSFFARNVREAEETGRLG 262 (1134)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 262 (1134)
...+.+|||+.+++.+...|..... .-+.++|++|+|||++|+.++.++...+ ...+|..++.....
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r~~~--~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a----- 242 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSRRTK--NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIA----- 242 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhcCCC--CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhh-----
Confidence 3446799999999999999875432 3456899999999999999999875432 22333322211100
Q ss_pred HHHHHHHHHHhcCCCCCCCccccHHHHHHhh-c-CCcceEEEecCCChH----------HHHHHhcCcCCCCCC-cEEEE
Q 001161 263 DLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL-T-RKKVLIVFDDVNHPR----------QIKILVGRLDLLASG-SRIII 329 (1134)
Q Consensus 263 ~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L-~-~k~~LlVLDdv~~~~----------~l~~l~~~~~~~~~g-srIii 329 (1134)
+.. .....+.....+.+.+ + +++.+|++|+++... ..+.|.+.+ ..| -++|-
T Consensus 243 -----------~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l---~~g~i~~Ig 307 (852)
T TIGR03346 243 -----------GAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL---ARGELHCIG 307 (852)
T ss_pred -----------cch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh---hcCceEEEE
Confidence 000 0001111122222222 2 468999999986442 122232222 223 34555
Q ss_pred EeCChhhhh-------hcCCCeEEEecCCCHHhHHHHHHHhh
Q 001161 330 TTRDRQVLA-------NCGVDEVYQMKELVHDDALRLFSRHA 364 (1134)
Q Consensus 330 TTR~~~~~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1134)
+|.....-. ....-..+.++..+.++..+++....
T Consensus 308 aTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 308 ATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred eCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 554333211 01123467899999999999887643
No 174
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.48 E-value=6.8e-06 Score=76.05 Aligned_cols=88 Identities=16% Similarity=0.201 Sum_probs=51.9
Q ss_pred CCCcEEEccCCcCcccCccccC-CCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccccccccCcceeec
Q 001161 774 EALDSLHAVGTAIRELPPSIVR-LKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESLGLLSLVTELHL 852 (1134)
Q Consensus 774 ~~L~~L~L~~n~i~~lp~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 852 (1134)
..|+..+|++|.+..+|..+.. .+.++.|++++|. ++.. |..+..++.|+.|+++.|.+...|.-+..+.+|-.|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdv-PeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDV-PEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhc-hHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 3444455555555555554433 3355555555555 2221 11255666666666667777777776666777777777
Q ss_pred CCCCccccccc
Q 001161 853 EGNNFERIPES 863 (1134)
Q Consensus 853 s~n~l~~lp~~ 863 (1134)
.+|.+..||..
T Consensus 131 ~~na~~eid~d 141 (177)
T KOG4579|consen 131 PENARAEIDVD 141 (177)
T ss_pred CCCccccCcHH
Confidence 77777777644
No 175
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.47 E-value=0.0013 Score=79.07 Aligned_cols=180 Identities=15% Similarity=0.135 Sum_probs=96.6
Q ss_pred ccCCccccchhHHHHHHhhcc----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcC
Q 001161 190 ENEDLVGVRLPMKEIESLLRT----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETG 259 (1134)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 259 (1134)
..++++|.+...+++.+.+.. +....+-+.++|++|.|||++|++++......|- .+ .
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~---~i-~-------- 120 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFF---SI-S-------- 120 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCee---ec-c--------
Confidence 445678888776666554431 1122345899999999999999999976533221 11 0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH----------------HHHHHhcCcCCC--
Q 001161 260 RLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR----------------QIKILVGRLDLL-- 321 (1134)
Q Consensus 260 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~-- 321 (1134)
...+.... .+. ........+.......+.+|+|||++... .+..+...++..
T Consensus 121 -~~~~~~~~----~g~-----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 121 -GSDFVEMF----VGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred -HHHHHHHH----hcc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 00111100 000 00011122223334567899999985431 122333333322
Q ss_pred CCCcEEEEEeCChhhhh-----hcCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCC-hHHHHH
Q 001161 322 ASGSRIIITTRDRQVLA-----NCGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGV-PLALEV 394 (1134)
Q Consensus 322 ~~gsrIiiTTR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~ 394 (1134)
..+..||.||.....+. ....+..++++..+.++-.++|..+.-+..... ......+++.+.|. +--|..
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~sgadl~~ 266 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFSGADLAN 266 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCCHHHHHH
Confidence 23445666776543222 113456889999999999999988764322211 12234677777774 333443
No 176
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.46 E-value=6.8e-05 Score=80.39 Aligned_cols=94 Identities=16% Similarity=0.145 Sum_probs=59.5
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhc-cCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCC------ccccH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISR-HFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNF------PNIDL 286 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~------~~~~~ 286 (1134)
..+.++|.|++|+|||||++++++.+.. +|+..+|+..+.+. .....++++++...+......... .....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er--~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER--PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC--CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 4567999999999999999999997654 68888898654332 246778888773333222111110 11112
Q ss_pred HHHHHh-hcCCcceEEEecCCChH
Q 001161 287 NFQSKK-LTRKKVLIVFDDVNHPR 309 (1134)
Q Consensus 287 ~~l~~~-L~~k~~LlVLDdv~~~~ 309 (1134)
...+.. -.++++++++|++....
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHhh
Confidence 222221 24789999999986543
No 177
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.46 E-value=0.0021 Score=69.50 Aligned_cols=197 Identities=15% Similarity=0.123 Sum_probs=112.5
Q ss_pred Cccccch---hHHHHHHhhccCC-CCeeEEEEEecCCChHHHHHHHHHHHHhccCCc------eeeeeechhHhhcCCHH
Q 001161 193 DLVGVRL---PMKEIESLLRTGS-TNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAG------SFFARNVREAEETGRLG 262 (1134)
Q Consensus 193 ~~vGr~~---~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~------~~~~~~~~~~~~~~~~~ 262 (1134)
.+||-.. .++.|++++.... ...+-+.|+|.+|+|||++++++.+.+...++. ++.+ +.....+..
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~v----q~P~~p~~~ 110 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYV----QMPPEPDER 110 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEE----ecCCCCChH
Confidence 4555433 3555666666532 344669999999999999999999876544432 2222 344566788
Q ss_pred HHHHHHHHHHhcCCCCCCCccccHHHHHHhhcC-CcceEEEecCCChH-----HHHHHhcCcCC---CCCCcEEEEEeCC
Q 001161 263 DLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTR-KKVLIVFDDVNHPR-----QIKILVGRLDL---LASGSRIIITTRD 333 (1134)
Q Consensus 263 ~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~-k~~LlVLDdv~~~~-----~l~~l~~~~~~---~~~gsrIiiTTR~ 333 (1134)
.+...|+.++..................+.++. +-=+||+|++.+.- +-+.++..+.. .-.=+-|.+-|++
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 999999999876655554544444555556654 33489999997641 11111111111 1223445565554
Q ss_pred hhhhhhc-----CCCeEEEecCCCHHhHH-HHHHHhh--cC-CCCCCccHHHHHHHHHHHhcCChHHHH
Q 001161 334 RQVLANC-----GVDEVYQMKELVHDDAL-RLFSRHA--FE-GDHPHESHTELACKIIKYARGVPLALE 393 (1134)
Q Consensus 334 ~~~~~~~-----~~~~~~~l~~L~~~ea~-~Lf~~~a--f~-~~~~~~~~~~~~~~i~~~~~GlPLal~ 393 (1134)
...+-.. +....+.++....++-. .|+.... .. .....-...+++..|...++|+.=-+.
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 3221111 11245667777655444 4433211 11 111223447889999999999864443
No 178
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.45 E-value=0.00023 Score=70.85 Aligned_cols=83 Identities=17% Similarity=0.152 Sum_probs=38.0
Q ss_pred CCCCcEEEccCCcCcccCccccC-CCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCcc----ccccccCc
Q 001161 773 LEALDSLHAVGTAIRELPPSIVR-LKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPE----SLGLLSLV 847 (1134)
Q Consensus 773 l~~L~~L~L~~n~i~~lp~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L 847 (1134)
++.|.+|.+++|.|+.+.+.+.. +++|+.|.|.+|++.....-..+..+|.|++|.+-+|..+.-.. -+..+|+|
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l 142 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSL 142 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcc
Confidence 33444444444444433333332 23344444444443222222334455556666665555553221 24556777
Q ss_pred ceeecCCC
Q 001161 848 TELHLEGN 855 (1134)
Q Consensus 848 ~~L~Ls~n 855 (1134)
+.||.++-
T Consensus 143 ~~LDF~kV 150 (233)
T KOG1644|consen 143 RTLDFQKV 150 (233)
T ss_pred eEeehhhh
Confidence 77776653
No 179
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.44 E-value=0.00095 Score=82.87 Aligned_cols=153 Identities=14% Similarity=0.172 Sum_probs=85.3
Q ss_pred cCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccC------CceeeeeechhHhhcCCHHHH
Q 001161 191 NEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF------AGSFFARNVREAEETGRLGDL 264 (1134)
Q Consensus 191 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~l 264 (1134)
.+.++||+.+++++.+.|..... .-+.++|.+|+|||++|+.++.++...- ...+|..+. .
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~--~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~---------~-- 251 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRK--NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI---------G-- 251 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCC--CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH---------H--
Confidence 34699999999999998876432 3357899999999999999998754321 222222111 1
Q ss_pred HHHHHHHHhcCCCCCCCccccHHHHHHhh-cCCcceEEEecCCCh----------HHHHH-HhcCcCCCCCCcEEEEEeC
Q 001161 265 RQQLLSTLLNDGNVKNFPNIDLNFQSKKL-TRKKVLIVFDDVNHP----------RQIKI-LVGRLDLLASGSRIIITTR 332 (1134)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~----------~~l~~-l~~~~~~~~~gsrIiiTTR 332 (1134)
.++ .+.. .....+.....+.+.+ +.++.+|++|+++.. .+... +.+.+. ...-++|-+|.
T Consensus 252 --~ll---aG~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt 323 (758)
T PRK11034 252 --SLL---AGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTT 323 (758)
T ss_pred --HHh---cccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCC
Confidence 110 0000 0011111222222222 346789999998643 12222 222221 12344555554
Q ss_pred Chhhhhh-------cCCCeEEEecCCCHHhHHHHHHHhh
Q 001161 333 DRQVLAN-------CGVDEVYQMKELVHDDALRLFSRHA 364 (1134)
Q Consensus 333 ~~~~~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1134)
..+.... ...-..++++.++.+++.+++....
T Consensus 324 ~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 3332111 1123578999999999999988644
No 180
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.44 E-value=0.0012 Score=76.37 Aligned_cols=148 Identities=18% Similarity=0.180 Sum_probs=88.9
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCC
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRK 296 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k 296 (1134)
++.|.|+-++||||+++.+....... .+++...........+.+..+.. .+.-..+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~~~~---------------------~~~~~~~ 94 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLLRAY---------------------IELKERE 94 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHHHHHH---------------------HHhhccC
Confidence 89999999999999996666554333 34442211111111111111111 1111127
Q ss_pred cceEEEecCCChHHHHHHhcCcCCCCCCcEEEEEeCChhhhhh------cCCCeEEEecCCCHHhHHHHHHHhhcCCCCC
Q 001161 297 KVLIVFDDVNHPRQIKILVGRLDLLASGSRIIITTRDRQVLAN------CGVDEVYQMKELVHDDALRLFSRHAFEGDHP 370 (1134)
Q Consensus 297 ~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~~------~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 370 (1134)
+..|+||.|.....|+.....+...++. +|++|+-+...... .|....+++-||+..|-..+-...+ ..
T Consensus 95 ~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~----~~ 169 (398)
T COG1373 95 KSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI----EP 169 (398)
T ss_pred CceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc----ch
Confidence 7899999999999999888777666666 89998887755332 2455688999999999776433100 00
Q ss_pred CccHHHHHHHHHHHhcCChHHHHHH
Q 001161 371 HESHTELACKIIKYARGVPLALEVL 395 (1134)
Q Consensus 371 ~~~~~~~~~~i~~~~~GlPLal~~~ 395 (1134)
. . .+..-+-.-..||.|-++..-
T Consensus 170 ~-~-~~~~f~~Yl~~GGfP~~v~~~ 192 (398)
T COG1373 170 S-K-LELLFEKYLETGGFPESVKAD 192 (398)
T ss_pred h-H-HHHHHHHHHHhCCCcHHHhCc
Confidence 0 0 111222233578999776553
No 181
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.42 E-value=0.0016 Score=79.18 Aligned_cols=192 Identities=13% Similarity=0.133 Sum_probs=106.1
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc-C-Cc-eeeeeechhHhhcCCHHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH-F-AG-SFFARNVREAEETGRLGDL 264 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-~~-~~~~~~~~~~~~~~~~~~l 264 (1134)
|...+++||.+...+.|...+..+. -.+.+.++|+.|+||||+|+.++..+-.. . .. .|-. ...
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~------------c~~ 78 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNV------------CPP 78 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCc------------cHH
Confidence 4556789999999999999886432 23567899999999999999999865321 1 00 0000 000
Q ss_pred HHHHHHHHhc-----CCCCCCCccccHHHHHHhh-----cCCcceEEEecCCChH--HHHHHhcCcCCCCCCcEEEEEe-
Q 001161 265 RQQLLSTLLN-----DGNVKNFPNIDLNFQSKKL-----TRKKVLIVFDDVNHPR--QIKILVGRLDLLASGSRIIITT- 331 (1134)
Q Consensus 265 ~~~ll~~l~~-----~~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIiiTT- 331 (1134)
..++...-.. +.......+ .++.+.+.+ ..++-++|+|+++... ..+.|...+....+...+|++|
T Consensus 79 c~~i~~g~~~d~~eid~~s~~~v~-~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~ 157 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGASNTGVD-DIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATT 157 (576)
T ss_pred HHHHhcCCCCCeeeeeccCccCHH-HHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeC
Confidence 0000000000 000000000 011122221 2344478899997653 4566666655545666666555
Q ss_pred CChhhhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCCh-HHHHHH
Q 001161 332 RDRQVLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVP-LALEVL 395 (1134)
Q Consensus 332 R~~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~ 395 (1134)
....+.... .....+++.+++.++....+...+-... ..-..+.+..+++.++|.. .|+..+
T Consensus 158 ~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg--i~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 158 EPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEG--ISISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred ChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 444444332 2235788999999998887776553221 1122456778888888865 344443
No 182
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.42 E-value=8.4e-05 Score=91.17 Aligned_cols=129 Identities=19% Similarity=0.243 Sum_probs=69.8
Q ss_pred CCCcEEeecCCCCCC-CCCcccc-CCCCCcEEEccCCcCc--ccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCC
Q 001161 750 KSLDVLNIDGCSNLQ-RLPEELG-YLEALDSLHAVGTAIR--ELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLR 825 (1134)
Q Consensus 750 ~~L~~L~L~~~~~~~-~~p~~~~-~l~~L~~L~L~~n~i~--~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 825 (1134)
.+|++|+++|..... ..|..++ .+|+|+.|.+.+-.+. ++..-..++++|..||+++.+ ++.. ..++.+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc--HHHhccccHH
Confidence 568888888754332 1222232 3677777777765554 222333456666666666544 2222 4455666666
Q ss_pred EEeccCCCCCCCc--cccccccCcceeecCCCCccccc-------cchhCCCCCcEEEeccccCC
Q 001161 826 DLNLNDCGITELP--ESLGLLSLVTELHLEGNNFERIP-------ESIIQLSNLEWLFIRYCERL 881 (1134)
Q Consensus 826 ~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp-------~~l~~l~~L~~L~Ls~n~~l 881 (1134)
.|.+.+=.+..-. ..+.+|++|+.||+|......-+ +.-..||+|+.||.|+..+.
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 6666665555322 24455666666666665433222 22234666666666655443
No 183
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.39 E-value=0.0012 Score=63.96 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=21.1
Q ss_pred EEEEecCCChHHHHHHHHHHHHh
Q 001161 218 LGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 218 v~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
|.|+|++|+||||+|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999874
No 184
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.38 E-value=0.0003 Score=79.02 Aligned_cols=95 Identities=14% Similarity=0.141 Sum_probs=61.8
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhcc-CCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCc------cccH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRH-FAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFP------NIDL 286 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~------~~~~ 286 (1134)
.-+.++|+|++|.|||||++.+++.+..+ |+..+|+..+++. ...+.+++++++..+.......... ....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER--~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC--CccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 45679999999999999999999987655 8888888665332 2467788888865443322221110 0111
Q ss_pred HHHHHh-hcCCcceEEEecCCChHH
Q 001161 287 NFQSKK-LTRKKVLIVFDDVNHPRQ 310 (1134)
Q Consensus 287 ~~l~~~-L~~k~~LlVLDdv~~~~~ 310 (1134)
+..+.. -.+++++|++|++.....
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ar 269 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRLAR 269 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHHHH
Confidence 111111 357899999999965543
No 185
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.37 E-value=0.00033 Score=69.69 Aligned_cols=102 Identities=23% Similarity=0.262 Sum_probs=63.4
Q ss_pred CCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCc--cccccccCcceeec
Q 001161 775 ALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELP--ESLGLLSLVTELHL 852 (1134)
Q Consensus 775 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L 852 (1134)
+...++|++|.+..++ .+..++.|..|.+++|+ +....+.--..+++|+.|.|.+|+|.++- ..+..++.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 4455666666666442 34556777777777776 44444444445667777777777776543 23556677777777
Q ss_pred CCCCccccc----cchhCCCCCcEEEeccc
Q 001161 853 EGNNFERIP----ESIIQLSNLEWLFIRYC 878 (1134)
Q Consensus 853 s~n~l~~lp----~~l~~l~~L~~L~Ls~n 878 (1134)
-+|.++.-. -.+..+|+|+.||...-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 777776444 23556777777777653
No 186
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.30 E-value=5.5e-05 Score=78.05 Aligned_cols=214 Identities=16% Similarity=0.114 Sum_probs=128.6
Q ss_pred cCCCCCcEEEccCCCCCcccCCcc-----CcCcccEEEecCCCCCCCcccccCCCcceeEecCcCccccCccccCCCCCC
Q 001161 655 QHLNKLAILNLSGCGNLQSLPDRI-----HLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSSIECLSKLS 729 (1134)
Q Consensus 655 ~~l~~L~~L~L~~~~~~~~lp~~~-----~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~ 729 (1134)
..+..+..++||+|.+.+.-...+ +-.+|+..+++.- .++...+-.. .++.-+...+-.||+|+
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~----------~~L~~Ll~aLlkcp~l~ 95 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELY----------SNLVMLLKALLKCPRLQ 95 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHH----------HHHHHHHHHHhcCCcce
Confidence 346777788888877655432222 3455666665541 0000000000 00111223356788899
Q ss_pred eeeccCCcCCcccCcc----cCCCCCCcEEeecCCCCCCCCCc-------------cccCCCCCcEEEccCCcCcccCcc
Q 001161 730 RLDLADCKSLKSLPSG----LCKLKSLDVLNIDGCSNLQRLPE-------------ELGYLEALDSLHAVGTAIRELPPS 792 (1134)
Q Consensus 730 ~L~L~~n~~~~~lp~~----l~~l~~L~~L~L~~~~~~~~~p~-------------~~~~l~~L~~L~L~~n~i~~lp~~ 792 (1134)
..+||+|.+....|.. +.+-+.|.+|.|++|.+-..-.. -..+-|.|+......|++...|..
T Consensus 96 ~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~ 175 (388)
T COG5238 96 KVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKE 175 (388)
T ss_pred eeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHH
Confidence 9999988876665543 45667889999988764321111 123457899999999998866542
Q ss_pred -----ccCCCCCCEEEecCCCCCCC----CcccccCCCCCCCEEeccCCCCCC-----CccccccccCcceeecCCCCcc
Q 001161 793 -----IVRLKSVRAIYFGRNRGLSL----PITFSVDGLQNLRDLNLNDCGITE-----LPESLGLLSLVTELHLEGNNFE 858 (1134)
Q Consensus 793 -----~~~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~ 858 (1134)
+..-.+|+.+.+..|.+-.. .....+..+.+|+.|||..|-++. +...+...+.|++|.+..|-++
T Consensus 176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 23336899999998862221 111244567899999999998883 3445566778999999999877
Q ss_pred cc--cc---chh--CCCCCcEEEecccc
Q 001161 859 RI--PE---SII--QLSNLEWLFIRYCE 879 (1134)
Q Consensus 859 ~l--p~---~l~--~l~~L~~L~Ls~n~ 879 (1134)
.- .+ .+. ..++|..|-..+|.
T Consensus 256 ~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 256 NEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred cccHHHHHHHhhhhcCCCccccccchhh
Confidence 21 11 121 24556666555554
No 187
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.29 E-value=0.006 Score=69.26 Aligned_cols=133 Identities=17% Similarity=0.202 Sum_probs=80.4
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhh
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL 293 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L 293 (1134)
....+.|||..|.|||.|++++.+......+...++... .......+...+.. ......++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~--------se~f~~~~v~a~~~---------~~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT--------SEDFTNDFVKALRD---------NEMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc--------HHHHHHHHHHHHHh---------hhHHHHHHhh
Confidence 456799999999999999999999887777633333111 11222222222222 1134444444
Q ss_pred cCCcceEEEecCCChH----HHHHHhcCcCCC-CCCcEEEEEeCCh---------hhhhhcCCCeEEEecCCCHHhHHHH
Q 001161 294 TRKKVLIVFDDVNHPR----QIKILVGRLDLL-ASGSRIIITTRDR---------QVLANCGVDEVYQMKELVHDDALRL 359 (1134)
Q Consensus 294 ~~k~~LlVLDdv~~~~----~l~~l~~~~~~~-~~gsrIiiTTR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L 359 (1134)
.-=++++||++-.. .-+.+...++.. ..|-.||+|++.. .+.......-++++.+++.+....+
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 33488999985321 122333222211 3444899998543 2223334456899999999999999
Q ss_pred HHHhhc
Q 001161 360 FSRHAF 365 (1134)
Q Consensus 360 f~~~af 365 (1134)
+.+++.
T Consensus 253 L~kka~ 258 (408)
T COG0593 253 LRKKAE 258 (408)
T ss_pred HHHHHH
Confidence 998764
No 188
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.29 E-value=0.001 Score=80.39 Aligned_cols=55 Identities=20% Similarity=0.223 Sum_probs=44.9
Q ss_pred cCCCccCCccccchhHHHHHHhhccCC---CCeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 186 TFQSENEDLVGVRLPMKEIESLLRTGS---TNVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 186 ~~~~~~~~~vGr~~~~~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
..|...++++|-+..++++..++.... ...++++|+|++|.||||+++.++..+.
T Consensus 78 yrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 78 YKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345667889999999999999887532 3456899999999999999999997653
No 189
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.27 E-value=0.0018 Score=65.60 Aligned_cols=52 Identities=25% Similarity=0.246 Sum_probs=42.1
Q ss_pred cCCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 186 TFQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 186 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
..|....++||-++-++.+.-.-.. .+.+-+.|.||+|+||||-+..+++++
T Consensus 21 YrP~~l~dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 21 YRPSVLQDIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred hCchHHHHhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 3455667899999999988766543 456778999999999999999999865
No 190
>PRK08181 transposase; Validated
Probab=97.26 E-value=0.00098 Score=72.38 Aligned_cols=34 Identities=26% Similarity=0.256 Sum_probs=27.7
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
.-+.++|++|+|||.||.++++....+.-.+.|+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~ 140 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT 140 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee
Confidence 4589999999999999999998776654455565
No 191
>PRK12377 putative replication protein; Provisional
Probab=97.25 E-value=0.0013 Score=70.59 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=29.1
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
...+.++|.+|+|||+||.++++.+..+...+.|+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i 135 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV 135 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 35689999999999999999999887665555665
No 192
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.24 E-value=0.02 Score=71.32 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=38.9
Q ss_pred CCccccchhHHHHHHhhccC-------CCCeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 192 EDLVGVRLPMKEIESLLRTG-------STNVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
..++|-+..++.+...+... ......+.++|++|+|||++|+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999988877631 12245689999999999999999988763
No 193
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.24 E-value=0.011 Score=61.78 Aligned_cols=197 Identities=14% Similarity=0.109 Sum_probs=105.5
Q ss_pred ccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHh
Q 001161 194 LVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLL 273 (1134)
Q Consensus 194 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 273 (1134)
.++...+-+.+..+-..-+++.+++.++|.-|.|||.++|++..-+.+.=-..+.+. ....+...+...+...+.
T Consensus 30 ~~~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~ 104 (269)
T COG3267 30 DYWAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADLE 104 (269)
T ss_pred hhhhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHhc
Confidence 344444444333322222345568999999999999999965554332222222332 123344455566666655
Q ss_pred cCCCCCCCccccHHH----HHHhh-cCCc-ceEEEecCCCh--HHHHHHh---cCcCCCCCCcEEEEEeCCh-------h
Q 001161 274 NDGNVKNFPNIDLNF----QSKKL-TRKK-VLIVFDDVNHP--RQIKILV---GRLDLLASGSRIIITTRDR-------Q 335 (1134)
Q Consensus 274 ~~~~~~~~~~~~~~~----l~~~L-~~k~-~LlVLDdv~~~--~~l~~l~---~~~~~~~~gsrIiiTTR~~-------~ 335 (1134)
.+ ........... +.... ++++ +.+++||..+. +.++.+. ..-......-+|+..-..+ .
T Consensus 105 ~~--p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~ 182 (269)
T COG3267 105 SQ--PKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLP 182 (269)
T ss_pred cC--ccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchH
Confidence 42 22233222222 22222 3566 89999998543 2343332 2211111112344332211 0
Q ss_pred hhhhc-CCCeE-EEecCCCHHhHHHHHHHhhcCCCCCCccH-HHHHHHHHHHhcCChHHHHHHHH
Q 001161 336 VLANC-GVDEV-YQMKELVHDDALRLFSRHAFEGDHPHESH-TELACKIIKYARGVPLALEVLGR 397 (1134)
Q Consensus 336 ~~~~~-~~~~~-~~l~~L~~~ea~~Lf~~~af~~~~~~~~~-~~~~~~i~~~~~GlPLal~~~g~ 397 (1134)
++... ....+ |++.+++.++...++..+.-+...+.+-+ .+....|.....|.|.++-.++.
T Consensus 183 ~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 183 VLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 11111 11224 89999999999998888775544333333 34566788899999999987764
No 194
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.23 E-value=0.00078 Score=65.85 Aligned_cols=34 Identities=29% Similarity=0.324 Sum_probs=26.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
+.+.|+|++|+||||+|+.++..+.......+++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 5689999999999999999998776554334444
No 195
>PRK09183 transposase/IS protein; Provisional
Probab=97.19 E-value=0.0013 Score=71.58 Aligned_cols=35 Identities=26% Similarity=0.211 Sum_probs=26.1
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
...+.|+|++|+|||+||.+++......-..+.|+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 34688999999999999999988654443334444
No 196
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.19 E-value=0.0038 Score=78.94 Aligned_cols=174 Identities=16% Similarity=0.149 Sum_probs=93.2
Q ss_pred ccCCccccchhHHHHHHhhcc-----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhc
Q 001161 190 ENEDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEET 258 (1134)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 258 (1134)
..+++.|++..++++.+.+.. +-...+.|.++|++|.|||+||+++++.....| +.+. .......
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~ 251 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSK 251 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhcc
Confidence 345688999988888776632 112345689999999999999999998764433 1221 1111000
Q ss_pred -CCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH-------------HHHHHhcCcCCC-CC
Q 001161 259 -GRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR-------------QIKILVGRLDLL-AS 323 (1134)
Q Consensus 259 -~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-------------~l~~l~~~~~~~-~~ 323 (1134)
.+. ........+.......+.+|+||+++... ....+...+... ..
T Consensus 252 ~~g~-------------------~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~ 312 (733)
T TIGR01243 252 YYGE-------------------SEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR 312 (733)
T ss_pred cccH-------------------HHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC
Confidence 000 00011112222334567899999985421 122333333222 22
Q ss_pred CcEEEE-EeCChhhhh-hc----CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCCh
Q 001161 324 GSRIII-TTRDRQVLA-NC----GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVP 389 (1134)
Q Consensus 324 gsrIii-TTR~~~~~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 389 (1134)
+..++| ||....-+. .. ..+..+.++..+.++..+++..+.-...... .....++++.+.|.-
T Consensus 313 ~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 313 GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFV 381 (733)
T ss_pred CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCC
Confidence 333444 554433211 11 2345788888899998888886542211111 122456777777754
No 197
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0071 Score=71.61 Aligned_cols=158 Identities=20% Similarity=0.257 Sum_probs=90.6
Q ss_pred CCccccchhHHHHHHhhccC----CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHH
Q 001161 192 EDLVGVRLPMKEIESLLRTG----STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQ 267 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 267 (1134)
.+-+|.++..+++.+.|... .-+..+++++|+||+|||.|++.+++-+...|-.. -+-.+++.++
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~-sLGGvrDEAE---------- 391 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI-SLGGVRDEAE---------- 391 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE-ecCccccHHH----------
Confidence 45689999999999888642 23457999999999999999999999887777422 2222333221
Q ss_pred HHHHHhcCCCC--CCCccccHHHHHHhhcCCcceEEEecCCChH------HHHHHhcCcCCCC-------------CCcE
Q 001161 268 LLSTLLNDGNV--KNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR------QIKILVGRLDLLA-------------SGSR 326 (1134)
Q Consensus 268 ll~~l~~~~~~--~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~------~l~~l~~~~~~~~-------------~gsr 326 (1134)
+.+.... ..-+...++.+++ .+.+.=|++||.++... -..+|+..++.-. -=|.
T Consensus 392 ----IRGHRRTYIGamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 392 ----IRGHRRTYIGAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred ----hccccccccccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 1111111 0111112222222 23455689999986432 1222222221111 1133
Q ss_pred E-EEEeCCh-h-h-hhhcCCCeEEEecCCCHHhHHHHHHHhhc
Q 001161 327 I-IITTRDR-Q-V-LANCGVDEVYQMKELVHDDALRLFSRHAF 365 (1134)
Q Consensus 327 I-iiTTR~~-~-~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~af 365 (1134)
| .|||-+. . + .+.....+++++.+-+.+|-.++-.+|..
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 3 3444433 2 1 12223457899999999999988777663
No 198
>PRK06526 transposase; Provisional
Probab=97.12 E-value=0.0036 Score=67.72 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=25.9
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhccCCceee
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFF 248 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~ 248 (1134)
.+-+.|+|++|+|||+||.++......+-..+.|
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence 3458999999999999999999876544333334
No 199
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.10 E-value=0.0047 Score=78.07 Aligned_cols=172 Identities=16% Similarity=0.210 Sum_probs=96.0
Q ss_pred cCCccccchhHHHHHHhhcc-----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcC
Q 001161 191 NEDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETG 259 (1134)
Q Consensus 191 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 259 (1134)
-.++.|.+...++|.+.+.. +-...+-|.++|++|.|||++|+++++.....| +.+ ...
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f---i~v-~~~------ 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF---IAV-RGP------ 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEE-ehH------
Confidence 35678888888888776542 112345589999999999999999998765433 111 100
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCccccHHHH-HHhhcCCcceEEEecCCChH--------------HHHHHhcCcCCC--C
Q 001161 260 RLGDLRQQLLSTLLNDGNVKNFPNIDLNFQ-SKKLTRKKVLIVFDDVNHPR--------------QIKILVGRLDLL--A 322 (1134)
Q Consensus 260 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l-~~~L~~k~~LlVLDdv~~~~--------------~l~~l~~~~~~~--~ 322 (1134)
+++....+ . .+..+..+ ...-...+.+|++|+++..- .+..++..++.. .
T Consensus 522 -------~l~~~~vG-----e-se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 522 -------EILSKWVG-----E-SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred -------HHhhcccC-----c-HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 01110000 0 01111222 22224567899999986431 123344433322 2
Q ss_pred CCcEEEEEeCChhhhhhc-----CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCC
Q 001161 323 SGSRIIITTRDRQVLANC-----GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGV 388 (1134)
Q Consensus 323 ~gsrIiiTTR~~~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl 388 (1134)
.+..||.||.....+... ..+..+.++..+.++-.++|..+.-+...... .....+++.+.|.
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~---~~l~~la~~t~g~ 656 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAED---VDLEELAEMTEGY 656 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCcc---CCHHHHHHHcCCC
Confidence 345566677665543221 34578899999999999999876533221111 1134566667664
No 200
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.07 E-value=0.0068 Score=77.29 Aligned_cols=51 Identities=16% Similarity=0.305 Sum_probs=39.4
Q ss_pred cCCccccchhHHHHHHhhccC-------CCCeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 191 NEDLVGVRLPMKEIESLLRTG-------STNVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 191 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
...++|.+..++.+...+... ......+.++|+.|+|||++|+++++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 346899999999988877532 112347889999999999999999986643
No 201
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.04 E-value=0.01 Score=75.33 Aligned_cols=52 Identities=29% Similarity=0.416 Sum_probs=40.3
Q ss_pred CCccccchhHHHHHHhhcc----CCCCeeEEEEEecCCChHHHHHHHHHHHHhccC
Q 001161 192 EDLVGVRLPMKEIESLLRT----GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF 243 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1134)
.+.+|.+...+.+.+++.. +....+++.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 3578999888888876542 222345799999999999999999999876554
No 202
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.03 E-value=0.00076 Score=67.08 Aligned_cols=64 Identities=20% Similarity=0.372 Sum_probs=56.1
Q ss_pred cEEEccccccc-ccchHHHHHHHHhhC-CCceEecC-CCCC--CCcchHHHHHHHHhcccEEEEecCCc
Q 001161 23 DVFLSFRGEDT-RENFTSHLYSALSRE-SIETFIDD-DLRR--GDEISQSLLDAIEASSISIIVFSERY 86 (1134)
Q Consensus 23 dvFis~~~~D~-r~~~~~~l~~~l~~~-g~~~~~d~-~~~~--g~~~~~~~~~~i~~s~~~i~v~S~~y 86 (1134)
-|||||+.+.. ...+|..|++.|++. |+.|.+|. +... +..+..++.++++++..+|+|+|+.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 39999988553 568899999999999 99999998 7744 78999999999999999999999655
No 203
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.03 E-value=0.019 Score=64.05 Aligned_cols=93 Identities=14% Similarity=0.115 Sum_probs=63.2
Q ss_pred CcceEEEecCCChH--HHHHHhcCcCCCCCCcEEEEEeCCh-hhhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCC
Q 001161 296 KKVLIVFDDVNHPR--QIKILVGRLDLLASGSRIIITTRDR-QVLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPH 371 (1134)
Q Consensus 296 k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIiiTTR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~ 371 (1134)
++=++|+|+++... ....|+..+....+++.+|++|.+. .++... ..-..+.+.+++.+++.+.+.... . .
T Consensus 113 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~---~--~ 187 (319)
T PRK08769 113 IAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG---V--S 187 (319)
T ss_pred CcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC---C--C
Confidence 45589999997654 4566666666556788777777654 444432 234678899999999998887531 1 1
Q ss_pred ccHHHHHHHHHHHhcCChHHHHHHH
Q 001161 372 ESHTELACKIIKYARGVPLALEVLG 396 (1134)
Q Consensus 372 ~~~~~~~~~i~~~~~GlPLal~~~g 396 (1134)
.+.+..++..++|.|+....+.
T Consensus 188 ---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 188 ---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ---hHHHHHHHHHcCCCHHHHHHHh
Confidence 2336678999999998665444
No 204
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.02 E-value=0.0036 Score=66.94 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=28.6
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
...+.++|.+|+|||+||.++++.+..+-..++++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 45789999999999999999999876655555555
No 205
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.02 E-value=0.013 Score=66.34 Aligned_cols=157 Identities=11% Similarity=0.110 Sum_probs=85.5
Q ss_pred Cccc-cchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhc-c-CCceeeeeechhHhhcCCHHHHHHHHH
Q 001161 193 DLVG-VRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISR-H-FAGSFFARNVREAEETGRLGDLRQQLL 269 (1134)
Q Consensus 193 ~~vG-r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~-f~~~~~~~~~~~~~~~~~~~~l~~~ll 269 (1134)
.++| -+..++.+...+..+ .-.+...++|+.|+||||+|+.+++.+-. . ...... +.-...+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~c-----------g~C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPC-----------GTCTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC-----------CcCHHHHHHh
Confidence 3566 556667777777533 22456789999999999999999886521 1 110000 0000000000
Q ss_pred HHHhcC------CCCCCCccccHHHHHHh-----hcCCcceEEEecCCChH--HHHHHhcCcCCCCCCcEEEEEeCChh-
Q 001161 270 STLLND------GNVKNFPNIDLNFQSKK-----LTRKKVLIVFDDVNHPR--QIKILVGRLDLLASGSRIIITTRDRQ- 335 (1134)
Q Consensus 270 ~~l~~~------~~~~~~~~~~~~~l~~~-----L~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIiiTTR~~~- 335 (1134)
....++ .......++ +..+.+. ..+++=++|+|+++... ....|+..+....+++.+|++|.+..
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~-ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ 152 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQ-IRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQ 152 (329)
T ss_pred cCCCCCEEEeccccccCCHHH-HHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHh
Confidence 000000 000000011 1111111 12344578999987543 46677777666677888887776543
Q ss_pred hhhhc-CCCeEEEecCCCHHhHHHHHHH
Q 001161 336 VLANC-GVDEVYQMKELVHDDALRLFSR 362 (1134)
Q Consensus 336 ~~~~~-~~~~~~~l~~L~~~ea~~Lf~~ 362 (1134)
+++.. .....+++.+++.++..+.+..
T Consensus 153 ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 153 ILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 33322 2346889999999999888865
No 206
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.97 E-value=0.018 Score=63.07 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.0
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
-|.++|++|+|||++|++++....
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 477999999999999999997653
No 207
>PRK06921 hypothetical protein; Provisional
Probab=96.97 E-value=0.0014 Score=71.53 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=29.1
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhcc-CCceeeee
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRH-FAGSFFAR 250 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 250 (1134)
...+.++|.+|+|||+||.++++.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4568999999999999999999987765 44556663
No 208
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.022 Score=64.77 Aligned_cols=130 Identities=18% Similarity=0.183 Sum_probs=77.3
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHh
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKK 292 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~ 292 (1134)
.....|.+.|++|.|||+||..++.. ..|+.+-.+. . .+--++.+-.+-. .......+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS---p-e~miG~sEsaKc~---------------~i~k~F~DA 594 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS---P-EDMIGLSESAKCA---------------HIKKIFEDA 594 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC---h-HHccCccHHHHHH---------------HHHHHHHHh
Confidence 34567889999999999999988854 6787655542 1 1111111111000 001122233
Q ss_pred hcCCcceEEEecCCChHHH------------HHHh---cCcCCCCCCcEEEEEeCChhhhhhcCC----CeEEEecCCCH
Q 001161 293 LTRKKVLIVFDDVNHPRQI------------KILV---GRLDLLASGSRIIITTRDRQVLANCGV----DEVYQMKELVH 353 (1134)
Q Consensus 293 L~~k~~LlVLDdv~~~~~l------------~~l~---~~~~~~~~gsrIiiTTR~~~~~~~~~~----~~~~~l~~L~~ 353 (1134)
-+..--.||+||++..-+| ++|. ...+..+..--|+-||....++..++. ...|.|+.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 3455679999999766542 3332 222322333345668888888888864 35789999987
Q ss_pred -HhHHHHHHHh
Q 001161 354 -DDALRLFSRH 363 (1134)
Q Consensus 354 -~ea~~Lf~~~ 363 (1134)
++..+.++..
T Consensus 675 ~~~~~~vl~~~ 685 (744)
T KOG0741|consen 675 GEQLLEVLEEL 685 (744)
T ss_pred hHHHHHHHHHc
Confidence 7777777653
No 209
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.012 Score=69.24 Aligned_cols=161 Identities=17% Similarity=0.128 Sum_probs=87.6
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhH-hhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhh
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREA-EETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL 293 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L 293 (1134)
..-|.|.|..|+|||+||+++++.+... ..+++.-+.+. .....+..+|+.+ ...+.+.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~--~~~hv~~v~Cs~l~~~~~e~iQk~l-----------------~~vfse~~ 491 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKD--LIAHVEIVSCSTLDGSSLEKIQKFL-----------------NNVFSEAL 491 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccc--cceEEEEEechhccchhHHHHHHHH-----------------HHHHHHHH
Confidence 4568999999999999999999987632 33333322222 2222355555444 23344566
Q ss_pred cCCcceEEEecCCChH------------HHHHHhcCc----C-CCCCCcE--EEEEeCChhhhhh-----cCCCeEEEec
Q 001161 294 TRKKVLIVFDDVNHPR------------QIKILVGRL----D-LLASGSR--IIITTRDRQVLAN-----CGVDEVYQMK 349 (1134)
Q Consensus 294 ~~k~~LlVLDdv~~~~------------~l~~l~~~~----~-~~~~gsr--IiiTTR~~~~~~~-----~~~~~~~~l~ 349 (1134)
...+-+|||||++..- .-+.+...+ . ....+.+ +|-|.....-+.. .-...+..++
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 7789999999986321 111111111 0 0123344 3444443322221 1123467889
Q ss_pred CCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCC-hHHHHHHH
Q 001161 350 ELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGV-PLALEVLG 396 (1134)
Q Consensus 350 ~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~g 396 (1134)
.+...+-.++++... .... .....+...-+..+|+|. |.-++++.
T Consensus 572 ap~~~~R~~IL~~~~-s~~~-~~~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 572 APAVTRRKEILTTIF-SKNL-SDITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred CcchhHHHHHHHHHH-Hhhh-hhhhhHHHHHHHHhcCCccchhHHHHH
Confidence 998888888777644 2221 222233333477778774 55555544
No 210
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.95 E-value=0.013 Score=60.72 Aligned_cols=171 Identities=16% Similarity=0.221 Sum_probs=98.8
Q ss_pred CCccccchhHHH---HHHhhccC----CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHH
Q 001161 192 EDLVGVRLPMKE---IESLLRTG----STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDL 264 (1134)
Q Consensus 192 ~~~vGr~~~~~~---l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 264 (1134)
+++||.+....+ |.+.|... .-..+-|..+|++|.|||.+|++++++.+--| ....
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~----l~vk------------- 183 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL----LLVK------------- 183 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce----EEec-------------
Confidence 467787765443 55666542 23467799999999999999999998654322 1110
Q ss_pred HHHHHHHHhcCCCCCCCccccHHHHHHhh-cCCcceEEEecCCCh--------------HHHHHHhcCcCCC--CCCcEE
Q 001161 265 RQQLLSTLLNDGNVKNFPNIDLNFQSKKL-TRKKVLIVFDDVNHP--------------RQIKILVGRLDLL--ASGSRI 327 (1134)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~--------------~~l~~l~~~~~~~--~~gsrI 327 (1134)
..+++.+-.++ ....+..+.++. +..++++.+|.++.. +...+|+..++.. +.|...
T Consensus 184 at~liGehVGd------gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 184 ATELIGEHVGD------GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred hHHHHHHHhhh------HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence 01222211111 111122222222 346899999987543 2255666665433 345555
Q ss_pred EEEeCChhhhhhc---CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCC
Q 001161 328 IITTRDRQVLANC---GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGV 388 (1134)
Q Consensus 328 iiTTR~~~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl 388 (1134)
|-.|....++... ...+.++..--+++|-.+++..++-+-.-+.+. -.+.++++++|.
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~---~~~~~~~~t~g~ 318 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDA---DLRYLAAKTKGM 318 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcccc---CHHHHHHHhCCC
Confidence 6666666554432 224567888889999999999988433322221 145666677664
No 211
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.012 Score=68.97 Aligned_cols=146 Identities=16% Similarity=0.231 Sum_probs=85.4
Q ss_pred CccccchhHHHHHHhhcc-----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCce-------eeeeechh
Q 001161 193 DLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGS-------FFARNVRE 254 (1134)
Q Consensus 193 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~-------~~~~~~~~ 254 (1134)
++=|.++...+|.+...- +-...+-|..+|+||.|||++|+++++.-.-.|-.+ -|+-
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vG---- 510 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVG---- 510 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcC----
Confidence 344466666666644322 224567799999999999999999999876666322 1110
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH-------------HHHHHhcCcCCC
Q 001161 255 AEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR-------------QIKILVGRLDLL 321 (1134)
Q Consensus 255 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-------------~l~~l~~~~~~~ 321 (1134)
.-+...+++++ +.-.-.+.+|.||.++... .+..|+..++..
T Consensus 511 -----eSEr~ir~iF~--------------------kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~ 565 (693)
T KOG0730|consen 511 -----ESERAIREVFR--------------------KARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGL 565 (693)
T ss_pred -----chHHHHHHHHH--------------------HHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccc
Confidence 01112222221 1112356788888875432 245555565544
Q ss_pred CCCcEEEE--Ee-CChhhhhh----cCCCeEEEecCCCHHhHHHHHHHhhcCC
Q 001161 322 ASGSRIII--TT-RDRQVLAN----CGVDEVYQMKELVHDDALRLFSRHAFEG 367 (1134)
Q Consensus 322 ~~gsrIii--TT-R~~~~~~~----~~~~~~~~l~~L~~~ea~~Lf~~~af~~ 367 (1134)
.....|+| .| |...+-.. -..+.++.++.-+.+.-.++|..++-+.
T Consensus 566 e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm 618 (693)
T KOG0730|consen 566 EALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM 618 (693)
T ss_pred cccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC
Confidence 44444443 33 33322111 1356788899888888999999988443
No 212
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.91 E-value=0.0089 Score=61.38 Aligned_cols=57 Identities=19% Similarity=0.311 Sum_probs=43.0
Q ss_pred CccCCccccchhHHHHHHhhcc--CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCc
Q 001161 189 SENEDLVGVRLPMKEIESLLRT--GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAG 245 (1134)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 245 (1134)
.+...++|.|...+.+.+--.. .+-..--|.+||.-|.||+.|++++.+.+..+...
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 3446789999998888653221 12233458999999999999999999998877765
No 213
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.90 E-value=0.024 Score=62.88 Aligned_cols=151 Identities=23% Similarity=0.270 Sum_probs=81.6
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhc-C-CHHHHHHHHHHHHhcCCCCCCCccccHHHHH
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEET-G-RLGDLRQQLLSTLLNDGNVKNFPNIDLNFQS 290 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~-~-~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~ 290 (1134)
...+.++|||++|.|||.+|++++.++...| +.....+.... . ..+...++++... .
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~----i~vsa~eL~sk~vGEsEk~IR~~F~~A-----------------~ 204 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP----IVMSAGELESENAGEPGKLIRQRYREA-----------------A 204 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe----EEEEHHHhhcCcCCcHHHHHHHHHHHH-----------------H
Confidence 3457899999999999999999999875443 22111111111 1 2223333333221 1
Q ss_pred Hh--hcCCcceEEEecCCCh------------HHH--HHHhcCcC----------C----CCCCcEEEEEeCChhhhhhc
Q 001161 291 KK--LTRKKVLIVFDDVNHP------------RQI--KILVGRLD----------L----LASGSRIIITTRDRQVLANC 340 (1134)
Q Consensus 291 ~~--L~~k~~LlVLDdv~~~------------~~l--~~l~~~~~----------~----~~~gsrIiiTTR~~~~~~~~ 340 (1134)
+. -+.++++|++|+++.. .++ ..|+..++ | ..++..||+||.+...+...
T Consensus 205 ~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpA 284 (413)
T PLN00020 205 DIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAP 284 (413)
T ss_pred HHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHh
Confidence 11 1457899999998621 111 22332211 1 24556788899777654322
Q ss_pred ----C-CCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChH
Q 001161 341 ----G-VDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPL 390 (1134)
Q Consensus 341 ----~-~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 390 (1134)
| .+..| ...+.++-.+++..+.- ..... .....++++...|-|+
T Consensus 285 LlRpGRfDk~i--~lPd~e~R~eIL~~~~r-~~~l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 285 LIRDGRMEKFY--WAPTREDRIGVVHGIFR-DDGVS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred HcCCCCCCcee--CCCCHHHHHHHHHHHhc-cCCCC---HHHHHHHHHcCCCCCc
Confidence 1 22333 44566666777766542 22222 2445567777777654
No 214
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0038 Score=75.99 Aligned_cols=119 Identities=18% Similarity=0.229 Sum_probs=75.9
Q ss_pred CCccccchhHHHHHHhhccC-------CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHH
Q 001161 192 EDLVGVRLPMKEIESLLRTG-------STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDL 264 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 264 (1134)
..++|-+..++.+.+.+... ..........|+.|+|||.||++++..+-..=+..+-+ ++++..+.+.+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSEy~EkHsVS-- 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSEYMEKHSVS-- 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHHHHHHHHHH--
Confidence 46899999999988876542 23456778899999999999999998764322222222 444544444433
Q ss_pred HHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcc-eEEEecCC--ChHHHHHHhcCcCC
Q 001161 265 RQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKV-LIVFDDVN--HPRQIKILVGRLDL 320 (1134)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVLDdv~--~~~~l~~l~~~~~~ 320 (1134)
.+.+........++ -..+-+..++++| +|.||+|+ +.+..+-|+..++.
T Consensus 568 ------rLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 568 ------RLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred ------HHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 33343333322222 3445566778887 88899995 55667777666554
No 215
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.90 E-value=0.0012 Score=67.30 Aligned_cols=34 Identities=32% Similarity=0.353 Sum_probs=25.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
.-+.++|.+|+|||.||.++++.+..+-..+.|+
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~ 81 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFI 81 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEe
Confidence 4599999999999999999998766544445565
No 216
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.88 E-value=0.046 Score=69.07 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=38.8
Q ss_pred cCCccccchhHHHHHHhhccC-------CCCeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 191 NEDLVGVRLPMKEIESLLRTG-------STNVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 191 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
...++|.+..++.+...+... .....++.++|++|+|||+||+.++..+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 346889999999888776531 11234678999999999999999998763
No 217
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.86 E-value=0.019 Score=64.59 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=27.4
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
+.++|+++|++|+||||++..++..+..+-..+.++
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI 275 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI 275 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEE
Confidence 457899999999999999999988765443233344
No 218
>PRK10536 hypothetical protein; Provisional
Probab=96.85 E-value=0.0037 Score=66.31 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=40.3
Q ss_pred cCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHH-H-hccCCceee
Q 001161 191 NEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSK-I-SRHFAGSFF 248 (1134)
Q Consensus 191 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~-~-~~~f~~~~~ 248 (1134)
...+.++......+..++.. ..+|.+.|++|.|||+||.+++.. + ...|...+.
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred CccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 34567888888888887753 348999999999999999998874 3 344554443
No 219
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.033 Score=62.06 Aligned_cols=90 Identities=13% Similarity=0.192 Sum_probs=62.5
Q ss_pred CcceEEEecCCChH--HHHHHhcCcCCCCCCcEEEEEeCCh-hhhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCC
Q 001161 296 KKVLIVFDDVNHPR--QIKILVGRLDLLASGSRIIITTRDR-QVLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPH 371 (1134)
Q Consensus 296 k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIiiTTR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~ 371 (1134)
++=++|+|+++... ....|+..+....+++.+|++|.+. .++... ..-..+.+.+++.+++.+.+.... . .
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~--~ 182 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG---I--T 182 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC---C--c
Confidence 34488899997654 4667777776667778777766654 455443 334678999999999999887532 1 1
Q ss_pred ccHHHHHHHHHHHhcCChHHHHHH
Q 001161 372 ESHTELACKIIKYARGVPLALEVL 395 (1134)
Q Consensus 372 ~~~~~~~~~i~~~~~GlPLal~~~ 395 (1134)
.+..++..++|.|+....+
T Consensus 183 -----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 183 -----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred -----hHHHHHHHcCCCHHHHHHH
Confidence 1346788999999876555
No 220
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.029 Score=65.83 Aligned_cols=184 Identities=18% Similarity=0.200 Sum_probs=107.9
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc----CC--ceeeeeechhHhhcCC-
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH----FA--GSFFARNVREAEETGR- 260 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~--~~~~~~~~~~~~~~~~- 260 (1134)
|...+++||-+...+.|...+..+. -.+--...|+-|+||||+||-++.-+--. .+ +.|.. +..-..+
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~----Ck~I~~g~ 86 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS----CKEINEGS 86 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh----hHhhhcCC
Confidence 4456778999999999999887543 12345689999999999999998754211 11 11111 1111111
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccccHHHHH---Hhh-----cCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEE
Q 001161 261 LGDLRQQLLSTLLNDGNVKNFPNIDLNFQS---KKL-----TRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIIT 330 (1134)
Q Consensus 261 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~---~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiT 330 (1134)
..++.+ + ....+.+++.++ +.. .++.=+.|+|.|+.. ..+.+|+..+....+....|..
T Consensus 87 ~~DviE-----i------DaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlA 155 (515)
T COG2812 87 LIDVIE-----I------DAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILA 155 (515)
T ss_pred cccchh-----h------hhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEe
Confidence 111110 0 001111233333 222 234448899999765 4588888888766777777776
Q ss_pred eCChhh-hhh-cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCCh
Q 001161 331 TRDRQV-LAN-CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVP 389 (1134)
Q Consensus 331 TR~~~~-~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 389 (1134)
|.+.+- ... ......|.++.++.++-...+...+-+.. .....+...-|++..+|-.
T Consensus 156 TTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~--I~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 156 TTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEG--INIEEDALSLIARAAEGSL 214 (515)
T ss_pred cCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcC--CccCHHHHHHHHHHcCCCh
Confidence 666533 222 23346799999999988888877663222 2233455556666666643
No 221
>PRK14974 cell division protein FtsY; Provisional
Probab=96.84 E-value=0.01 Score=66.58 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=24.8
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
+.++|+++|++|+||||++..++..+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35799999999999999999988876654
No 222
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.81 E-value=0.0032 Score=72.16 Aligned_cols=106 Identities=19% Similarity=0.174 Sum_probs=62.0
Q ss_pred CCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhc--cCCceeeeeechhHhhcCCHHHHHHHHH
Q 001161 192 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISR--HFAGSFFARNVREAEETGRLGDLRQQLL 269 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~l~~~ll 269 (1134)
.++++.+..++.+...|..+ +.|.++|++|+|||++|+++++.+.. .+..+.|+. .....+..++....
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt----FHpsySYeDFI~G~- 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ----FHQSYSYEDFIQGY- 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe----ecccccHHHHhccc-
Confidence 45788888899998888643 45888999999999999999987643 344444442 23333333332211
Q ss_pred HHHhcCCCCCC-CccccHHHHHHhhc--CCcceEEEecCCChH
Q 001161 270 STLLNDGNVKN-FPNIDLNFQSKKLT--RKKVLIVFDDVNHPR 309 (1134)
Q Consensus 270 ~~l~~~~~~~~-~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~ 309 (1134)
........ ......+.++.... ++++++|+|+++...
T Consensus 246 ---rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 246 ---RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred ---CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 11110000 00011223333322 468999999997654
No 223
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.79 E-value=0.00098 Score=69.48 Aligned_cols=106 Identities=19% Similarity=0.164 Sum_probs=57.1
Q ss_pred CCCCCCEEeccCCCCCCCccccccccCcceeecCCC--Ccc-ccccchhCCCCCcEEEeccccCCCccCCcCCCcCeEec
Q 001161 820 GLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGN--NFE-RIPESIIQLSNLEWLFIRYCERLQSLPKLPCNLIWLDA 896 (1134)
Q Consensus 820 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n--~l~-~lp~~l~~l~~L~~L~Ls~n~~l~~lp~~~~~L~~L~l 896 (1134)
.+..|+.|++.++.++++. .+-.+++|++|.++.| .+. .++.....+++|++|++++|++--
T Consensus 41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-------------- 105 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-------------- 105 (260)
T ss_pred cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--------------
Confidence 4455666666666655432 1234667777777777 333 444445556777777777765421
Q ss_pred cCCcccccccCCCCCCCCccceeeeccCCCCCCccccccchHHHHHHhHHHHHHh
Q 001161 897 HHCTALESLPGLFPSSNESYLRTLYLSDNFKLDPNDLGGIVKGALQKIQLLATAR 951 (1134)
Q Consensus 897 ~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~~~~~~~~~l~~L~~L~ 951 (1134)
+...-|...+.+|..|++.+|--. ++...-...|.-+++|++|+
T Consensus 106 --------lstl~pl~~l~nL~~Ldl~n~~~~---~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 106 --------LSTLRPLKELENLKSLDLFNCSVT---NLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred --------ccccchhhhhcchhhhhcccCCcc---ccccHHHHHHHHhhhhcccc
Confidence 111122235556666666666111 12233345667777777776
No 224
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.76 E-value=0.00043 Score=72.10 Aligned_cols=66 Identities=23% Similarity=0.323 Sum_probs=46.6
Q ss_pred ccCCCCCCCEEeccCC--CCC-CCccccccccCcceeecCCCCccccc--cchhCCCCCcEEEeccccCCC
Q 001161 817 SVDGLQNLRDLNLNDC--GIT-ELPESLGLLSLVTELHLEGNNFERIP--ESIIQLSNLEWLFIRYCERLQ 882 (1134)
Q Consensus 817 ~~~~l~~L~~L~Ls~n--~l~-~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~~l~ 882 (1134)
.+..+++|+.|.++.| +++ .++.....+++|++|+|++|+|..+. ..+..+.+|..|++.+|.-..
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence 4456778888888888 444 35544556689999999999887422 256677888888888887544
No 225
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.76 E-value=0.011 Score=63.72 Aligned_cols=174 Identities=20% Similarity=0.184 Sum_probs=99.7
Q ss_pred ccCCccccchhHHHHHHhhccC--CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHh--hcCCHHHHH
Q 001161 190 ENEDLVGVRLPMKEIESLLRTG--STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAE--ETGRLGDLR 265 (1134)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~~l~ 265 (1134)
+...++|-.++..++..++... -++..-|.|+|+.|.|||+|......+ .+.+...+.+....... ++-.+..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 4557999999999998888652 133445889999999999997766554 33444344433222211 222345566
Q ss_pred HHHHHHHhcCCCCCCCccccHHHHHHhhcC------CcceEEEecCCCh----HH--HHHHhcCc-CCCCCCcEEEEEeC
Q 001161 266 QQLLSTLLNDGNVKNFPNIDLNFQSKKLTR------KKVLIVFDDVNHP----RQ--IKILVGRL-DLLASGSRIIITTR 332 (1134)
Q Consensus 266 ~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~------k~~LlVLDdv~~~----~~--l~~l~~~~-~~~~~gsrIiiTTR 332 (1134)
+|+..++........+..+....+...|+. .++++|+|.++-. .| +-.+.... ....|-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 666555544433334444445555555543 4688999887533 22 22222211 12356677788998
Q ss_pred Ch-------hhhhhcCCCeEEEecCCCHHhHHHHHHHhh
Q 001161 333 DR-------QVLANCGVDEVYQMKELVHDDALRLFSRHA 364 (1134)
Q Consensus 333 ~~-------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1134)
-. .|-.......++-++.++-++-.++++.-.
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 54 222222223356667777777666666544
No 226
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.75 E-value=0.047 Score=70.08 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=39.7
Q ss_pred CCccccchhHHHHHHhhccCC-------CCeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 192 EDLVGVRLPMKEIESLLRTGS-------TNVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.++..+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~ 621 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD 621 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 468999999999988876421 12456889999999999999999987644
No 227
>PHA00729 NTP-binding motif containing protein
Probab=96.74 E-value=0.0037 Score=65.29 Aligned_cols=27 Identities=30% Similarity=0.298 Sum_probs=23.4
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
+...|.|+|.+|+||||||.++++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445789999999999999999998764
No 228
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.74 E-value=0.034 Score=66.30 Aligned_cols=56 Identities=14% Similarity=0.365 Sum_probs=38.0
Q ss_pred HHHhhcCCcceEEEec------CCChHHHHHHhcCcCCCCCCcEEEEEeCChhhhhhcCCCeEEEecC
Q 001161 289 QSKKLTRKKVLIVFDD------VNHPRQIKILVGRLDLLASGSRIIITTRDRQVLANCGVDEVYQMKE 350 (1134)
Q Consensus 289 l~~~L~~k~~LlVLDd------v~~~~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~~~~~~~~l~~ 350 (1134)
+...+..++-++|||. ++..+.++..+..+ +| .||+.|.|+..+... +.+++.+++
T Consensus 450 La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~G-tvl~VSHDr~Fl~~v-a~~i~~~~~ 511 (530)
T COG0488 450 LAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EG-TVLLVSHDRYFLDRV-ATRIWLVED 511 (530)
T ss_pred HHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CC-eEEEEeCCHHHHHhh-cceEEEEcC
Confidence 4445567889999995 44445555555443 34 588889999888876 366777765
No 229
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.74 E-value=0.25 Score=56.16 Aligned_cols=102 Identities=16% Similarity=0.112 Sum_probs=68.1
Q ss_pred CcceEEEecCCChH-----------HHHHHhcCcCCCCCCcEEEEEeCChhhhhhc------CCCeEEEecCCCHHhHHH
Q 001161 296 KKVLIVFDDVNHPR-----------QIKILVGRLDLLASGSRIIITTRDRQVLANC------GVDEVYQMKELVHDDALR 358 (1134)
Q Consensus 296 k~~LlVLDdv~~~~-----------~l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~------~~~~~~~l~~L~~~ea~~ 358 (1134)
+|=+||+|+..... +|...+-. .+=.+||++|-+....... .+...+.+...+.+.|.+
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 36799999974321 23333222 4556899988876543322 244678899999999999
Q ss_pred HHHHhhcCCCCC-------------C-----ccHHHHHHHHHHHhcCChHHHHHHHHHhcC
Q 001161 359 LFSRHAFEGDHP-------------H-----ESHTELACKIIKYARGVPLALEVLGRYLYG 401 (1134)
Q Consensus 359 Lf~~~af~~~~~-------------~-----~~~~~~~~~i~~~~~GlPLal~~~g~~L~~ 401 (1134)
+...+.-..... . ..........++.+||--.-|..+++.++.
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 999887432110 0 124455667888999999999999988864
No 230
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.73 E-value=0.0084 Score=75.29 Aligned_cols=157 Identities=20% Similarity=0.264 Sum_probs=86.1
Q ss_pred CCccccchhHHHHHHhhcc----CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHH
Q 001161 192 EDLVGVRLPMKEIESLLRT----GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQ 267 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 267 (1134)
.+.+|.+...+.+.++|.. +.....++.++|++|+||||+|+.++..+...|-...+ ..++. ...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~-~~~~d------~~~---- 390 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMAL-GGVRD------EAE---- 390 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEc-CCCCC------HHH----
Confidence 3589999999999887763 12345679999999999999999999876554422221 11111 111
Q ss_pred HHHHHhcCCC--CCCCccccHHHHHHhhcCCcceEEEecCCChHH------HHHHhcCcCCC---------------CCC
Q 001161 268 LLSTLLNDGN--VKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPRQ------IKILVGRLDLL---------------ASG 324 (1134)
Q Consensus 268 ll~~l~~~~~--~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~------l~~l~~~~~~~---------------~~g 324 (1134)
+.+... ...........+.. .....-+|+||.++.... ...+...+... -..
T Consensus 391 ----i~g~~~~~~g~~~G~~~~~l~~-~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 391 ----IRGHRRTYIGSMPGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred ----hccchhccCCCCCcHHHHHHHh-cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCc
Confidence 111100 00111111222222 122334788999864321 23444333210 123
Q ss_pred cEEEEEeCChhhhhh-cCCCeEEEecCCCHHhHHHHHHHhh
Q 001161 325 SRIIITTRDRQVLAN-CGVDEVYQMKELVHDDALRLFSRHA 364 (1134)
Q Consensus 325 srIiiTTR~~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1134)
..+|.|+....+... .+...++++.+++.+|-.++..++.
T Consensus 466 v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 466 VMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred eEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 344555544433221 1233578999999999988887766
No 231
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.72 E-value=0.038 Score=62.38 Aligned_cols=92 Identities=14% Similarity=0.141 Sum_probs=62.7
Q ss_pred CCcceEEEecCCChH--HHHHHhcCcCCCCCCcEEEEEeCCh-hhhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCC
Q 001161 295 RKKVLIVFDDVNHPR--QIKILVGRLDLLASGSRIIITTRDR-QVLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHP 370 (1134)
Q Consensus 295 ~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIiiTTR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 370 (1134)
+++=++|+|+++... ....|+..+....+++.+|++|.+. .++... ..-..+.+.+++.+++.+.+.... + .
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~--~--~ 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV--T--M 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc--C--C
Confidence 345588999987653 4677777776667778777777665 455442 234578899999999998886532 1 1
Q ss_pred CccHHHHHHHHHHHhcCChHHHH
Q 001161 371 HESHTELACKIIKYARGVPLALE 393 (1134)
Q Consensus 371 ~~~~~~~~~~i~~~~~GlPLal~ 393 (1134)
..+.+..++..++|.|....
T Consensus 183 ---~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 183 ---SQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ---CHHHHHHHHHHcCCCHHHHH
Confidence 13346788999999996443
No 232
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.012 Score=68.01 Aligned_cols=53 Identities=26% Similarity=0.359 Sum_probs=41.5
Q ss_pred cCCccccchhHHHHHHhhcc----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccC
Q 001161 191 NEDLVGVRLPMKEIESLLRT----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF 243 (1134)
Q Consensus 191 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1134)
.+++=|++..+.++.+++.. +-...|-|.++|++|.|||.||++++.+..-.|
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf 251 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF 251 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce
Confidence 46788999999999887653 113456699999999999999999998764433
No 233
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.68 E-value=0.035 Score=64.64 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=25.2
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
...+|.++|.+|+||||.|..++..++.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 45789999999999999999999877654
No 234
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.012 Score=66.90 Aligned_cols=148 Identities=20% Similarity=0.226 Sum_probs=79.8
Q ss_pred cCCccccchh---HHHHHHhhccCC-------CCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCC
Q 001161 191 NEDLVGVRLP---MKEIESLLRTGS-------TNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGR 260 (1134)
Q Consensus 191 ~~~~vGr~~~---~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 260 (1134)
.+++-|.|+. ++++.+.|.... .=.+-|.++|++|.|||-||++++-+.. .-+|...-.+.
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~----VPFF~~sGSEF----- 373 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG----VPFFYASGSEF----- 373 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC----CCeEeccccch-----
Confidence 3456677754 555666665431 2235589999999999999999985432 22222110000
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccccHHHHHHhh----cCCcceEEEecCCChH-------------HHHHHhcCcCCCCC
Q 001161 261 LGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL----TRKKVLIVFDDVNHPR-------------QIKILVGRLDLLAS 323 (1134)
Q Consensus 261 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L----~~k~~LlVLDdv~~~~-------------~l~~l~~~~~~~~~ 323 (1134)
.+ .-...+...+++.+ ++-+++|.+|.++... .+..++..++.+.+
T Consensus 374 -dE----------------m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~q 436 (752)
T KOG0734|consen 374 -DE----------------MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQ 436 (752)
T ss_pred -hh----------------hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCc
Confidence 00 01112233333332 4568999999986432 25666666666654
Q ss_pred CcEEEE--EeCChhhhhh----cC-CCeEEEecCCCHHhHHHHHHHhh
Q 001161 324 GSRIII--TTRDRQVLAN----CG-VDEVYQMKELVHDDALRLFSRHA 364 (1134)
Q Consensus 324 gsrIii--TTR~~~~~~~----~~-~~~~~~l~~L~~~ea~~Lf~~~a 364 (1134)
..-||| .|.-++.+.. .| .+..+.|+.-+..--.++|..+.
T Consensus 437 NeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 437 NEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred CCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 443433 4443333322 12 24455666655555555666555
No 235
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.68 E-value=0.044 Score=61.26 Aligned_cols=91 Identities=10% Similarity=0.130 Sum_probs=62.8
Q ss_pred CCcceEEEecCCChH--HHHHHhcCcCCCCCCcEEEEEeCCh-hhhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCC
Q 001161 295 RKKVLIVFDDVNHPR--QIKILVGRLDLLASGSRIIITTRDR-QVLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHP 370 (1134)
Q Consensus 295 ~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIiiTTR~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 370 (1134)
+++=++|+|+++... ....|+..+....+++.+|++|.+. .++... ..-..+.+.+++.+++.+.+..... .
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~--~-- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS--A-- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc--c--
Confidence 344578899997654 4677777776667788877777665 444442 2346889999999999998887541 1
Q ss_pred CccHHHHHHHHHHHhcCChHHH
Q 001161 371 HESHTELACKIIKYARGVPLAL 392 (1134)
Q Consensus 371 ~~~~~~~~~~i~~~~~GlPLal 392 (1134)
+ ...+..++..++|.|+..
T Consensus 182 -~--~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 182 -E--ISEILTALRINYGRPLLA 200 (325)
T ss_pred -C--hHHHHHHHHHcCCCHHHH
Confidence 1 223566788999999643
No 236
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.65 E-value=0.0081 Score=66.85 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=28.7
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
..+-+.|+|..|+|||.||.++++.+..+-..+.|+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~ 190 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLL 190 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 345689999999999999999999886554445555
No 237
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.65 E-value=0.0095 Score=65.21 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=28.3
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
.+.++|+++|++|+||||++..++..++..-..+.++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li 106 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA 106 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 3468999999999999999999998776553334444
No 238
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.60 E-value=0.008 Score=76.39 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=39.5
Q ss_pred CCccccchhHHHHHHhhcc-------CCCCeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 192 EDLVGVRLPMKEIESLLRT-------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
..++|.+..++.+.+.+.. ......++.++|++|+|||.+|++++..+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4689999999998887643 1223457899999999999999999987643
No 239
>PRK08118 topology modulation protein; Reviewed
Probab=96.57 E-value=0.0016 Score=65.77 Aligned_cols=32 Identities=34% Similarity=0.579 Sum_probs=25.6
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhc---cCCceee
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKISR---HFAGSFF 248 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~---~f~~~~~ 248 (1134)
.|.|+|++|+||||||+++++++.- +|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 5899999999999999999987643 3555554
No 240
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.53 E-value=0.015 Score=66.22 Aligned_cols=138 Identities=17% Similarity=0.194 Sum_probs=78.6
Q ss_pred CccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCC---------------------ceeeeee
Q 001161 193 DLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFA---------------------GSFFARN 251 (1134)
Q Consensus 193 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---------------------~~~~~~~ 251 (1134)
.++|-+....++..+..........+.++|++|+||||+|.++++.+-.... ....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~- 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN- 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-
Confidence 4567777777777777643333345999999999999999999987653321 111110
Q ss_pred chhHhhcCC---HHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChHH--HHHHhcCcCCCCCCcE
Q 001161 252 VREAEETGR---LGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPRQ--IKILVGRLDLLASGSR 326 (1134)
Q Consensus 252 ~~~~~~~~~---~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~--l~~l~~~~~~~~~gsr 326 (1134)
.+.... ..+..+++........ ..++.-++++|+++.... ..++...+.......+
T Consensus 81 ---~s~~~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 81 ---PSDLRKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred ---ccccCCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 111111 1222222222111110 024566899999986543 5566666655677888
Q ss_pred EEEEeCCh-hhhhhc-CCCeEEEecC
Q 001161 327 IIITTRDR-QVLANC-GVDEVYQMKE 350 (1134)
Q Consensus 327 IiiTTR~~-~~~~~~-~~~~~~~l~~ 350 (1134)
+|++|... .++... ..-..+++.+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCC
Confidence 88888744 333322 2234566665
No 241
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.52 E-value=0.0051 Score=68.94 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=28.4
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
.-+.++|.+|+|||+||.++++.+..+-..+.|+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~ 217 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYR 217 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 5699999999999999999999876655556666
No 242
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.52 E-value=0.1 Score=58.83 Aligned_cols=91 Identities=15% Similarity=0.196 Sum_probs=60.7
Q ss_pred CcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeCC-hhhhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCC
Q 001161 296 KKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTRD-RQVLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPH 371 (1134)
Q Consensus 296 k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR~-~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~ 371 (1134)
++=++|+|+++.. .....|+..+....+++.+|++|.+ ..++... ..-..+.+.+++.++..+.+.... . +
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-~- 206 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-A- 206 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C-C-
Confidence 3448889998754 4467777777766778876666655 4555442 334688999999999999887642 1 1
Q ss_pred ccHHHHHHHHHHHhcCChHHHHHHH
Q 001161 372 ESHTELACKIIKYARGVPLALEVLG 396 (1134)
Q Consensus 372 ~~~~~~~~~i~~~~~GlPLal~~~g 396 (1134)
. ...++..++|.|+....+.
T Consensus 207 -~----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 207 -D----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred -h----HHHHHHHcCCCHHHHHHHH
Confidence 1 1235778899997554443
No 243
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.52 E-value=0.0073 Score=63.02 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=63.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcC
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTR 295 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~ 295 (1134)
.+|.|+|+.|.||||++.++...+.......++... . ......... ..+ ........+.....+.++..++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e--~-~~E~~~~~~-~~~----i~q~~vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE--D-PIEFVHESK-RSL----INQREVGLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc--C-CccccccCc-cce----eeecccCCCccCHHHHHHHHhcC
Confidence 368999999999999999988877655444444311 0 000000000 000 00111111223345667777887
Q ss_pred CcceEEEecCCChHHHHHHhcCcCCCCCCcEEEEEeCChhhh
Q 001161 296 KKVLIVFDDVNHPRQIKILVGRLDLLASGSRIIITTRDRQVL 337 (1134)
Q Consensus 296 k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIiiTTR~~~~~ 337 (1134)
.+=.|++|++.+.+.++...... ..|..++.|+......
T Consensus 74 ~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 74 DPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 88899999998887766544432 3455677777655443
No 244
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.50 E-value=0.002 Score=68.00 Aligned_cols=33 Identities=27% Similarity=0.478 Sum_probs=28.9
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
.++|+|..|.||||+++.+.......|+.++.+
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~ 47 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLI 47 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEE
Confidence 478999999999999999999899999666555
No 245
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.49 E-value=0.0057 Score=60.43 Aligned_cols=118 Identities=14% Similarity=0.118 Sum_probs=61.3
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHh----cCCC--CCCCc-------
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLL----NDGN--VKNFP------- 282 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~----~~~~--~~~~~------- 282 (1134)
.+|-|++-.|.||||+|...+-+...+=-.+.++.-+... ...+-....+.+ ..+. +... ...+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-CccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 3678888889999999999888766554444454322221 122333333332 0000 0000 00011
Q ss_pred cccHHHHHHhhcCC-cceEEEecCCCh-----HHHHHHhcCcCCCCCCcEEEEEeCChh
Q 001161 283 NIDLNFQSKKLTRK-KVLIVFDDVNHP-----RQIKILVGRLDLLASGSRIIITTRDRQ 335 (1134)
Q Consensus 283 ~~~~~~l~~~L~~k-~~LlVLDdv~~~-----~~l~~l~~~~~~~~~gsrIiiTTR~~~ 335 (1134)
....+..++.+... -=|+|||++-.. -+.+.+...+....++..+|+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11233344445444 459999997433 122333333333456789999999863
No 246
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.48 E-value=0.0021 Score=71.69 Aligned_cols=48 Identities=15% Similarity=0.280 Sum_probs=41.0
Q ss_pred CccccchhHHHHHHhhccC----CCCeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 193 DLVGVRLPMKEIESLLRTG----STNVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 193 ~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
+++|+++.++++.+++... +...++++++|++|.||||||+++++.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 7999999999999888652 23468899999999999999999998664
No 247
>PRK04296 thymidine kinase; Provisional
Probab=96.48 E-value=0.0048 Score=63.89 Aligned_cols=111 Identities=14% Similarity=0.049 Sum_probs=60.0
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCC--CCCccccHHHHHHhh
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNV--KNFPNIDLNFQSKKL 293 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~--~~~~~~~~~~l~~~L 293 (1134)
.++.|+|..|.||||+|..++.+...+...++++.. ....+.+...+ .+.+...... .....+....+++ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~--~~d~~~~~~~i----~~~lg~~~~~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP--AIDDRYGEGKV----VSRIGLSREAIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec--cccccccCCcE----ecCCCCcccceEeCChHHHHHHHHh-h
Confidence 468899999999999999999887665444444310 00111111111 1221111000 1112222333333 2
Q ss_pred cCCcceEEEecCCC--hHHHHHHhcCcCCCCCCcEEEEEeCChh
Q 001161 294 TRKKVLIVFDDVNH--PRQIKILVGRLDLLASGSRIIITTRDRQ 335 (1134)
Q Consensus 294 ~~k~~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIiiTTR~~~ 335 (1134)
.++.-+||+|.+.- .+++..+...+. ..|..||+|.++..
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 23456999999854 344544444322 56889999999843
No 248
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.45 E-value=0.049 Score=64.49 Aligned_cols=200 Identities=15% Similarity=0.163 Sum_probs=113.3
Q ss_pred ccCCccccchhHHHHHHhhccC--C-CCeeEEEEEecCCChHHHHHHHHHHHHh-----ccCCceeeeeechhHhhcCCH
Q 001161 190 ENEDLVGVRLPMKEIESLLRTG--S-TNVYKLGIWGIGGIGKTTIAGAIFSKIS-----RHFAGSFFARNVREAEETGRL 261 (1134)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~L~~~--~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~-----~~f~~~~~~~~~~~~~~~~~~ 261 (1134)
.+..+-+|+.+..+|...+... . .....+-|.|.+|.|||+.+..|.+.+. ..-+...|+.. ..-.-...
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveI--Ngm~l~~~ 471 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEI--NGLRLASP 471 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEE--cceeecCH
Confidence 6677889999999999887652 2 3345899999999999999999998553 12222223210 11222346
Q ss_pred HHHHHHHHHHHhcCCCCCCCccccHHHHHHhhc-----CCcceEEEecCCChHH--HHHHhcCcCCC-CCCcEEEEEeCC
Q 001161 262 GDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLT-----RKKVLIVFDDVNHPRQ--IKILVGRLDLL-ASGSRIIITTRD 333 (1134)
Q Consensus 262 ~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~-----~k~~LlVLDdv~~~~~--l~~l~~~~~~~-~~gsrIiiTTR~ 333 (1134)
.++...|+.++.+.... .....+.+..++. .++.++++|+++..-. -+-+-..++|. .++|+++|-+=.
T Consensus 472 ~~~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 472 REIYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIA 548 (767)
T ss_pred HHHHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEec
Confidence 67777887777655432 2233455555554 4578999999865432 22222234444 477887664421
Q ss_pred h--h---------hhhhcCCCeEEEecCCCHHhHHHHHHHhhcCCCCC-CccHHHHHHHHHHHhcCChHHHHHH
Q 001161 334 R--Q---------VLANCGVDEVYQMKELVHDDALRLFSRHAFEGDHP-HESHTELACKIIKYARGVPLALEVL 395 (1134)
Q Consensus 334 ~--~---------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~GlPLal~~~ 395 (1134)
. . +....| -..+...+-++++-.++...+.-+-..- ....+-.|++|+...|..-.|+.+.
T Consensus 549 NTmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred ccccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 1 1 111112 2345677777777777776655332111 1222223444554444444444443
No 249
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.04 Score=66.85 Aligned_cols=175 Identities=15% Similarity=0.171 Sum_probs=102.6
Q ss_pred ccCCccccchhHHHHHHh---hccC-------CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcC
Q 001161 190 ENEDLVGVRLPMKEIESL---LRTG-------STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETG 259 (1134)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~---L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 259 (1134)
...++.|.|...++|.+. |..+ ..-.+=|.++|++|.|||-||++++-+-. +=|+.... +
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~svSG--S--- 378 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSVSG--S--- 378 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----Cceeeech--H---
Confidence 346788888776666554 4332 12345689999999999999999996532 22221110 0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCccccHHHHHHh----hcCCcceEEEecCCCh-----------------HHHHHHhcCc
Q 001161 260 RLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKK----LTRKKVLIVFDDVNHP-----------------RQIKILVGRL 318 (1134)
Q Consensus 260 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~~-----------------~~l~~l~~~~ 318 (1134)
++.+...+. +...+++. -...++.|.+|+++.. ..+..|+...
T Consensus 379 -------EFvE~~~g~---------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~em 442 (774)
T KOG0731|consen 379 -------EFVEMFVGV---------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEM 442 (774)
T ss_pred -------HHHHHhccc---------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHh
Confidence 000000000 01112222 2346778888876422 1266676666
Q ss_pred CCCCCCcEE--EEEeCChhhhhh-----cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHH
Q 001161 319 DLLASGSRI--IITTRDRQVLAN-----CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLA 391 (1134)
Q Consensus 319 ~~~~~gsrI--iiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 391 (1134)
+.+.....| +-+|+..+++.. -..++.+.++.-+.....++|..|+-+.... .+..++++ ++..+-|.+=|
T Consensus 443 Dgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 443 DGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred cCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 666544433 345555555332 2346788899999999999999998544332 34456666 88888888755
Q ss_pred H
Q 001161 392 L 392 (1134)
Q Consensus 392 l 392 (1134)
-
T Consensus 521 d 521 (774)
T KOG0731|consen 521 D 521 (774)
T ss_pred H
Confidence 3
No 250
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.44 E-value=0.0055 Score=65.62 Aligned_cols=49 Identities=22% Similarity=0.256 Sum_probs=38.3
Q ss_pred HHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeee
Q 001161 202 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFAR 250 (1134)
Q Consensus 202 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1134)
..|.++|..+-..-.++.|+|.+|.|||++|.+++......-..++|+.
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4456666544456689999999999999999999987766667778875
No 251
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.43 E-value=0.0098 Score=64.37 Aligned_cols=36 Identities=28% Similarity=0.281 Sum_probs=28.2
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
...-+.++|.+|+|||.||.++.+++...--.+.|+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~ 139 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFI 139 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 445589999999999999999999988433444554
No 252
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.41 E-value=0.015 Score=58.37 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=27.1
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhccCCceeeee
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFAR 250 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1134)
++.|+|.+|.||||+|..++.....+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999987766545566653
No 253
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.39 E-value=0.0029 Score=60.24 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=21.4
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
+|+|.|++|+||||+|+++++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 254
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.39 E-value=0.026 Score=56.72 Aligned_cols=138 Identities=17% Similarity=0.225 Sum_probs=70.9
Q ss_pred ccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc--------------------CCceeeeeechhH
Q 001161 196 GVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH--------------------FAGSFFARNVREA 255 (1134)
Q Consensus 196 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--------------------f~~~~~~~~~~~~ 255 (1134)
|-+...+.|...+..+ .-.+.+.++|+.|+||+++|+++++.+-.. .+...|+... ..
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~ 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPD-KK 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETT-TS
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecc-cc
Confidence 4455666777777543 224568999999999999999999865221 1122222100 00
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeCC
Q 001161 256 EETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTRD 333 (1134)
Q Consensus 256 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR~ 333 (1134)
.......++. ++...+.... ..+++=++|+||++.. +...+|+..+.....++++|++|++
T Consensus 79 ~~~i~i~~ir-~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 79 KKSIKIDQIR-EIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SSSBSHHHHH-HHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred cchhhHHHHH-HHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 0001111111 1211111000 1224558999999764 4466777666666788999988887
Q ss_pred hhh-hhhc-CCCeEEEecCCC
Q 001161 334 RQV-LANC-GVDEVYQMKELV 352 (1134)
Q Consensus 334 ~~~-~~~~-~~~~~~~l~~L~ 352 (1134)
... +... ..-..+.+.+++
T Consensus 142 ~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 142 PSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GGGS-HHHHTTSEEEEE----
T ss_pred hHHChHHHHhhceEEecCCCC
Confidence 753 3322 233466666553
No 255
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.35 E-value=0.0035 Score=60.34 Aligned_cols=38 Identities=37% Similarity=0.557 Sum_probs=29.4
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhcc-CC-ceeeeeech
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRH-FA-GSFFARNVR 253 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~-~~~~~~~~~ 253 (1134)
.-|+|+||+|+||||+++.+++.++.. |. +.+|..-++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 458999999999999999999988766 65 344444343
No 256
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.32 E-value=0.073 Score=60.85 Aligned_cols=25 Identities=28% Similarity=0.179 Sum_probs=22.1
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
..+++++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 257
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.32 E-value=0.011 Score=62.86 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=37.9
Q ss_pred HHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeee
Q 001161 201 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFAR 250 (1134)
Q Consensus 201 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1134)
+..|.++|..+-..-+++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 5 i~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 5 CKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34566666544456788999999999999999999987765555666763
No 258
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.30 E-value=0.00029 Score=85.25 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=17.1
Q ss_pred cccchhhccccccCcCCCCCCCCCcCCCCCcEEEccC
Q 001161 631 HGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSG 667 (1134)
Q Consensus 631 l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~ 667 (1134)
++.|+.+.+..+..+...........+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 4555555555554444322112233445555555544
No 259
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.30 E-value=0.027 Score=68.00 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=39.5
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
|...++++|.+..++.+...+... ...-|.|+|.+|+|||++|+.+++..
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344567999999999998876433 23457899999999999999998753
No 260
>PRK04132 replication factor C small subunit; Provisional
Probab=96.28 E-value=0.036 Score=69.22 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=90.6
Q ss_pred cCCChHHHHHHHHHHHHh-ccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEE
Q 001161 223 IGGIGKTTIAGAIFSKIS-RHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIV 301 (1134)
Q Consensus 223 ~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlV 301 (1134)
+.++||||+|.++++++- +.+...+.-.+ .++..+...+. +++......... -..+.-++|
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElN---ASd~rgid~IR-~iIk~~a~~~~~--------------~~~~~KVvI 635 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELN---ASDERGINVIR-EKVKEFARTKPI--------------GGASFKIIF 635 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEe---CCCcccHHHHH-HHHHHHHhcCCc--------------CCCCCEEEE
Confidence 889999999999998763 23322222211 22223444333 332222111110 012446999
Q ss_pred EecCCChH--HHHHHhcCcCCCCCCcEEEEEeCChh-hhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHH
Q 001161 302 FDDVNHPR--QIKILVGRLDLLASGSRIIITTRDRQ-VLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTEL 377 (1134)
Q Consensus 302 LDdv~~~~--~l~~l~~~~~~~~~gsrIiiTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~ 377 (1134)
+|+++... +...|...+.......++|++|.+.. +.... .....+.+.+++.++..+.+.+.+-...- .-..+.
T Consensus 636 IDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi--~i~~e~ 713 (846)
T PRK04132 636 LDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL--ELTEEG 713 (846)
T ss_pred EECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC--CCCHHH
Confidence 99998654 56667666665566778777766553 32222 23468999999999998888776532221 112567
Q ss_pred HHHHHHHhcCChHHHHH
Q 001161 378 ACKIIKYARGVPLALEV 394 (1134)
Q Consensus 378 ~~~i~~~~~GlPLal~~ 394 (1134)
...|++.++|.+.....
T Consensus 714 L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 714 LQAILYIAEGDMRRAIN 730 (846)
T ss_pred HHHHHHHcCCCHHHHHH
Confidence 78899999998754433
No 261
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.023 Score=69.49 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=87.6
Q ss_pred ccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc-CC-----ceeeeeechhHhhcCCHHH
Q 001161 190 ENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH-FA-----GSFFARNVREAEETGRLGD 263 (1134)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~-----~~~~~~~~~~~~~~~~~~~ 263 (1134)
..+.++||+.+++.+.+.|.....+.+ .++|.+|+|||++|.-++.++... -+ ..++-.++.
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g---------- 235 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG---------- 235 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH----------
Confidence 345699999999999999987654443 478999999999999999876432 22 122221111
Q ss_pred HHHHHHHHHhcCCCCCCCccccHHHHHHhh-cCCcceEEEecCCCh----------H-HHHHHhcCcCCCCCCcEEEEEe
Q 001161 264 LRQQLLSTLLNDGNVKNFPNIDLNFQSKKL-TRKKVLIVFDDVNHP----------R-QIKILVGRLDLLASGSRIIITT 331 (1134)
Q Consensus 264 l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~----------~-~l~~l~~~~~~~~~gsrIiiTT 331 (1134)
.+..........++....+.+.+ +.+++.+++|.++.. . ...-|.+.+. .|.--.|-.||
T Consensus 236 -------~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-RGeL~~IGATT 307 (786)
T COG0542 236 -------SLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-RGELRCIGATT 307 (786)
T ss_pred -------HHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-cCCeEEEEecc
Confidence 11111111233333333333333 345899999987532 1 2222333321 12223344566
Q ss_pred CChhh------hhhcCCCeEEEecCCCHHhHHHHHHHh
Q 001161 332 RDRQV------LANCGVDEVYQMKELVHDDALRLFSRH 363 (1134)
Q Consensus 332 R~~~~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 363 (1134)
-++.- +......+.+.|...+.+++.+.+.-.
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 44421 001123457789999999999888753
No 262
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.24 E-value=0.014 Score=66.64 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=38.0
Q ss_pred HHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeee
Q 001161 201 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFAR 250 (1134)
Q Consensus 201 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1134)
+.++.+.|..+-....++.|.|.+|+|||||+.+++..+...-..++|+.
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45666666544455678999999999999999999987766555666763
No 263
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.013 Score=62.67 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=28.1
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHh----ccCCceeee
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKIS----RHFAGSFFA 249 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~----~~f~~~~~~ 249 (1134)
-.|+|.++|+||.|||+|.+++++++. ++|..+.-+
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~li 215 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLI 215 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEE
Confidence 458899999999999999999999653 445444443
No 264
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.023 Score=65.82 Aligned_cols=127 Identities=16% Similarity=0.225 Sum_probs=77.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHh-hc
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKK-LT 294 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~-L~ 294 (1134)
.-|.+||++|.|||-||++|+++-...|-.+- +. +++.... ++ .+..++.+..+ -.
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEag~NFisVK------------GP-ELlNkYV----GE------SErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEAGANFISVK------------GP-ELLNKYV----GE------SERAVRQVFQRARA 602 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhccCceEeec------------CH-HHHHHHh----hh------HHHHHHHHHHHhhc
Confidence 34889999999999999999998766663110 11 1111110 10 11122333333 34
Q ss_pred CCcceEEEecCCChH-------------HHHHHhcCcCCC--CCCcEEEEEeCChhhhhh-----cCCCeEEEecCCCHH
Q 001161 295 RKKVLIVFDDVNHPR-------------QIKILVGRLDLL--ASGSRIIITTRDRQVLAN-----CGVDEVYQMKELVHD 354 (1134)
Q Consensus 295 ~k~~LlVLDdv~~~~-------------~l~~l~~~~~~~--~~gsrIiiTTR~~~~~~~-----~~~~~~~~l~~L~~~ 354 (1134)
..+++|.+|.++... .+..|+..++.. ..|.-||-.|..+++... -..+.+.-|+.-+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 579999999986431 245555555433 245566666665554322 234668889999999
Q ss_pred hHHHHHHHhhc
Q 001161 355 DALRLFSRHAF 365 (1134)
Q Consensus 355 ea~~Lf~~~af 365 (1134)
|-.+++....-
T Consensus 683 eR~~ILK~~tk 693 (802)
T KOG0733|consen 683 ERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHhc
Confidence 99999998874
No 265
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.021 Score=63.59 Aligned_cols=100 Identities=19% Similarity=0.246 Sum_probs=61.4
Q ss_pred hhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhc-CCC
Q 001161 199 LPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLN-DGN 277 (1134)
Q Consensus 199 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~-~~~ 277 (1134)
.-+.++.+.|..+--.-.+|.|-|-+|||||||..+++.+++.+- .+.|+. .+....++.-.. ..+.- ..+
T Consensus 77 tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs------GEES~~QiklRA-~RL~~~~~~ 148 (456)
T COG1066 77 TGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS------GEESLQQIKLRA-DRLGLPTNN 148 (456)
T ss_pred CChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe------CCcCHHHHHHHH-HHhCCCccc
Confidence 345567777754434557899999999999999999999998777 777873 333444433222 11211 111
Q ss_pred CCCCccccHHHHHHhhc-CCcceEEEecCC
Q 001161 278 VKNFPNIDLNFQSKKLT-RKKVLIVFDDVN 306 (1134)
Q Consensus 278 ~~~~~~~~~~~l~~~L~-~k~~LlVLDdv~ 306 (1134)
...-.+...+.+.+.+. .++-++|+|-+.
T Consensus 149 l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 149 LYLLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred eEEehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 11222233444444443 577899999873
No 266
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.16 E-value=0.021 Score=61.44 Aligned_cols=50 Identities=16% Similarity=0.128 Sum_probs=36.7
Q ss_pred HHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeee
Q 001161 201 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFAR 250 (1134)
Q Consensus 201 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1134)
+..|.++|..+-..-.++.|+|.+|.|||++|.+++.....+=..++|+.
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 44566666555566788999999999999999999765444445666663
No 267
>PRK07261 topology modulation protein; Provisional
Probab=96.16 E-value=0.014 Score=59.38 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.7
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
.|+|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998764
No 268
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.14 E-value=0.00052 Score=82.96 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=16.9
Q ss_pred CcEEEeccccCCCccC-----CcCCCcCeEeccCCcccc
Q 001161 870 LEWLFIRYCERLQSLP-----KLPCNLIWLDAHHCTALE 903 (1134)
Q Consensus 870 L~~L~Ls~n~~l~~lp-----~~~~~L~~L~l~~c~~l~ 903 (1134)
|+.|+++.|.....-- ....++..+++.+|..+.
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 6666666665433211 013345556666655443
No 269
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.13 E-value=0.11 Score=60.10 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=24.7
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
...+|.++|.+|+||||+|..++..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 35789999999999999999998766544
No 270
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.13 E-value=0.025 Score=57.90 Aligned_cols=36 Identities=33% Similarity=0.609 Sum_probs=31.6
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
...+|.+.|+.|.||||+|++++.++...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 345899999999999999999999998888777777
No 271
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.09 Score=54.11 Aligned_cols=143 Identities=17% Similarity=0.259 Sum_probs=82.7
Q ss_pred ccchhHHHHHHhhccC-----------CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHH
Q 001161 196 GVRLPMKEIESLLRTG-----------STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDL 264 (1134)
Q Consensus 196 Gr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 264 (1134)
|.+..++++.+.+... -.+.+-|.++|++|.|||-||+++++. ..+.|+... +.+-+
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-----t~c~firvs-------gselv 218 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-----TDCTFIRVS-------GSELV 218 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-----cceEEEEec-------hHHHH
Confidence 3455666665554432 134456899999999999999999964 233444221 11122
Q ss_pred HHHHHHHHhcCCCCCCCccccHHHHHHhh----cCCcceEEEecCCChH--------------H--HHHHhcCcCCC--C
Q 001161 265 RQQLLSTLLNDGNVKNFPNIDLNFQSKKL----TRKKVLIVFDDVNHPR--------------Q--IKILVGRLDLL--A 322 (1134)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L----~~k~~LlVLDdv~~~~--------------~--l~~l~~~~~~~--~ 322 (1134)
|+-+. ++.+++++.+ .+.+-.|..|.+++.. | .-+++..++.+ .
T Consensus 219 qk~ig--------------egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat 284 (404)
T KOG0728|consen 219 QKYIG--------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT 284 (404)
T ss_pred HHHhh--------------hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc
Confidence 22221 1123333322 3467788889876431 1 23344444443 3
Q ss_pred CCcEEEEEeCChhhhhh-----cCCCeEEEecCCCHHhHHHHHHHhh
Q 001161 323 SGSRIIITTRDRQVLAN-----CGVDEVYQMKELVHDDALRLFSRHA 364 (1134)
Q Consensus 323 ~gsrIiiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1134)
+.-+||+.|..-+++.. -..++.++.++-+.+.-.+++.-+.
T Consensus 285 knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 285 KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 56688887765555432 2456678888888887777777665
No 272
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.10 E-value=0.12 Score=58.65 Aligned_cols=44 Identities=14% Similarity=0.376 Sum_probs=35.3
Q ss_pred hhHHHHHHhhccCC-CCeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 199 LPMKEIESLLRTGS-TNVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 199 ~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
.-.+.|.+.+.... ....+|||.|.=|.|||++.+.+.+++...
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34556666776543 667899999999999999999999888776
No 273
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.09 E-value=0.01 Score=62.68 Aligned_cols=45 Identities=24% Similarity=0.252 Sum_probs=35.4
Q ss_pred hhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeee
Q 001161 207 LLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARN 251 (1134)
Q Consensus 207 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 251 (1134)
+|..+-...+++.|+|.+|.|||++|.+++......-..++|+..
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 444444557899999999999999999998877666677888853
No 274
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.08 E-value=0.046 Score=67.70 Aligned_cols=128 Identities=16% Similarity=0.156 Sum_probs=71.7
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCC
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRK 296 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k 296 (1134)
-|.|+|++|.|||++|+.++.+....| +.+. ... +.... ... ........+.......
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~~f---~~is-~~~---------~~~~~----~g~-----~~~~~~~~f~~a~~~~ 244 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSD---------FVEMF----VGV-----GASRVRDMFEQAKKAA 244 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe-hHH---------hHHhh----hcc-----cHHHHHHHHHHHHhcC
Confidence 389999999999999999988764433 1111 000 00000 000 0001111222223346
Q ss_pred cceEEEecCCChH----------------HHHHHhcCcCCCC--CCcEEEEEeCChhhhhhc-----CCCeEEEecCCCH
Q 001161 297 KVLIVFDDVNHPR----------------QIKILVGRLDLLA--SGSRIIITTRDRQVLANC-----GVDEVYQMKELVH 353 (1134)
Q Consensus 297 ~~LlVLDdv~~~~----------------~l~~l~~~~~~~~--~gsrIiiTTR~~~~~~~~-----~~~~~~~l~~L~~ 353 (1134)
+.+|++|+++... .+..++..++.+. .+.-+|.||...+.+... ..+..+.++..+.
T Consensus 245 P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~ 324 (644)
T PRK10733 245 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 324 (644)
T ss_pred CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCH
Confidence 7899999986541 1333433333222 344555577766543321 2456788999999
Q ss_pred HhHHHHHHHhhcC
Q 001161 354 DDALRLFSRHAFE 366 (1134)
Q Consensus 354 ~ea~~Lf~~~af~ 366 (1134)
++-.+++..+..+
T Consensus 325 ~~R~~Il~~~~~~ 337 (644)
T PRK10733 325 RGREQILKVHMRR 337 (644)
T ss_pred HHHHHHHHHHhhc
Confidence 8888998887643
No 275
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.07 E-value=0.0041 Score=60.86 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.7
Q ss_pred EEEEecCCChHHHHHHHHHHHH
Q 001161 218 LGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 218 v~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
|.++|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999887
No 276
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.05 E-value=0.0057 Score=59.76 Aligned_cols=44 Identities=25% Similarity=0.278 Sum_probs=32.0
Q ss_pred cccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHH
Q 001161 195 VGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 195 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
||....++++.+.+..-.....-|.|+|..|.||+++|+.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 57777777777766553344456899999999999999988874
No 277
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.03 E-value=0.029 Score=58.01 Aligned_cols=126 Identities=24% Similarity=0.254 Sum_probs=58.8
Q ss_pred cchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHH-H-hccCCceeeeeechhHhhcCC--HHHHH-------
Q 001161 197 VRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSK-I-SRHFAGSFFARNVREAEETGR--LGDLR------- 265 (1134)
Q Consensus 197 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~-~-~~~f~~~~~~~~~~~~~~~~~--~~~l~------- 265 (1134)
+..+.....+.|. +..+|.+.|++|.|||.||.+.+-+ + ..+|+..++....-+..+.-+ ...+.
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 3344444555554 4568999999999999999988753 3 466777777654332211111 11111
Q ss_pred HHHHHHHhcCCCCCCCccccHHHHH----------HhhcCC---cceEEEecCCC--hHHHHHHhcCcCCCCCCcEEEEE
Q 001161 266 QQLLSTLLNDGNVKNFPNIDLNFQS----------KKLTRK---KVLIVFDDVNH--PRQIKILVGRLDLLASGSRIIIT 330 (1134)
Q Consensus 266 ~~ll~~l~~~~~~~~~~~~~~~~l~----------~~L~~k---~~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIiiT 330 (1134)
.-+...+..- .. ....+.+. ..++++ ..+||+|++.+ ..++..+... .+.||+||++
T Consensus 81 ~p~~d~l~~~-~~----~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~ 152 (205)
T PF02562_consen 81 RPIYDALEEL-FG----KEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIIT 152 (205)
T ss_dssp HHHHHHHTTT-S-----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEE
T ss_pred HHHHHHHHHH-hC----hHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEe
Confidence 1111111110 00 01111111 123332 46899999955 4577777655 4899999998
Q ss_pred eCCh
Q 001161 331 TRDR 334 (1134)
Q Consensus 331 TR~~ 334 (1134)
--..
T Consensus 153 GD~~ 156 (205)
T PF02562_consen 153 GDPS 156 (205)
T ss_dssp E---
T ss_pred cCce
Confidence 7544
No 278
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.03 E-value=0.043 Score=61.67 Aligned_cols=83 Identities=14% Similarity=0.222 Sum_probs=47.7
Q ss_pred eEEEecCCChH--HHHHHhcCcCCCCCCcEEEEEeCChh-hhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccH
Q 001161 299 LIVFDDVNHPR--QIKILVGRLDLLASGSRIIITTRDRQ-VLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESH 374 (1134)
Q Consensus 299 LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIiiTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~ 374 (1134)
++|+|+++..+ ....+...+.....+..+|++|.+.. +.... ..-..+.+.+++.+++.+.+.... . ...
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~--~~~- 189 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG---V--AEP- 189 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC---C--CcH-
Confidence 44568776543 33444443333345676777777654 33332 223578899999999998886532 1 111
Q ss_pred HHHHHHHHHHhcCChHH
Q 001161 375 TELACKIIKYARGVPLA 391 (1134)
Q Consensus 375 ~~~~~~i~~~~~GlPLa 391 (1134)
. ..+..++|-|+.
T Consensus 190 ~----~~l~~~~g~p~~ 202 (325)
T PRK08699 190 E----ERLAFHSGAPLF 202 (325)
T ss_pred H----HHHHHhCCChhh
Confidence 1 123568898854
No 279
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.049 Score=65.84 Aligned_cols=153 Identities=20% Similarity=0.222 Sum_probs=86.9
Q ss_pred CCccccchhHHHHHHhhcc-----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCC
Q 001161 192 EDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGR 260 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 260 (1134)
.+..|.+...+.+.+.... +-...+.+.++|++|.|||.||+++++.....|-..-.- +....
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~----~l~sk-- 315 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS----ELLSK-- 315 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH----HHhcc--
Confidence 3455666666555554332 113455799999999999999999998665554322211 10000
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh-------------HHHHHHhcCcCCCCC--Cc
Q 001161 261 LGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP-------------RQIKILVGRLDLLAS--GS 325 (1134)
Q Consensus 261 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-------------~~l~~l~~~~~~~~~--gs 325 (1134)
. ................+..+..|.+|+++.. .....++..+..... +.
T Consensus 316 -------~---------vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v 379 (494)
T COG0464 316 -------W---------VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGV 379 (494)
T ss_pred -------c---------cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCce
Confidence 0 0000001122222333568899999998532 123344444332233 33
Q ss_pred EEEEEeCChhhhhhc-----CCCeEEEecCCCHHhHHHHHHHhhcC
Q 001161 326 RIIITTRDRQVLANC-----GVDEVYQMKELVHDDALRLFSRHAFE 366 (1134)
Q Consensus 326 rIiiTTR~~~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~af~ 366 (1134)
.||-||-....+... ..+..+.++.-+.++..+.|..+.-.
T Consensus 380 ~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 380 LVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred EEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 455555544443321 34668899999999999999998843
No 280
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.00 E-value=0.013 Score=63.16 Aligned_cols=41 Identities=27% Similarity=0.440 Sum_probs=34.6
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechh
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVRE 254 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~ 254 (1134)
.-+.++|.|.+|.||||||+.+++.++.+|+..+++..+.+
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGe 108 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGE 108 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc
Confidence 44679999999999999999999999888887787765543
No 281
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.0007 Score=70.40 Aligned_cols=77 Identities=25% Similarity=0.220 Sum_probs=55.0
Q ss_pred CCCCCCCEEeccCCCCCCCccccccccCcceeecCCCCccccc--cchhCCCCCcEEEeccccCCCccCC--------cC
Q 001161 819 DGLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFERIP--ESIIQLSNLEWLFIRYCERLQSLPK--------LP 888 (1134)
Q Consensus 819 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~~l~~lp~--------~~ 888 (1134)
..|+.|+.|.||-|.|+++. .+..+++|++|+|..|.|.++. ..+.++++|+.|.|..|+-.+.-+. .+
T Consensus 38 ~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L 116 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL 116 (388)
T ss_pred HhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHc
Confidence 45667777777777777663 3567788888888888887665 3567888888888888887665553 45
Q ss_pred CCcCeEec
Q 001161 889 CNLIWLDA 896 (1134)
Q Consensus 889 ~~L~~L~l 896 (1134)
|+|+.||=
T Consensus 117 PnLkKLDn 124 (388)
T KOG2123|consen 117 PNLKKLDN 124 (388)
T ss_pred ccchhccC
Confidence 67777763
No 282
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.98 E-value=0.016 Score=65.07 Aligned_cols=103 Identities=15% Similarity=0.125 Sum_probs=58.4
Q ss_pred HHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCC-ceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCc
Q 001161 204 IESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFA-GSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFP 282 (1134)
Q Consensus 204 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~ 282 (1134)
+.+.+..- ..-+.++|+|.+|.|||||++.+++.+..+.+ ..+++..+.+ ......++++.+...+..........
T Consensus 123 vID~l~Pi-GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgE--R~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 123 VVDLVAPI-GKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDE--RPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred hhhheeec-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecC--CCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 44444322 23356799999999999999999998766543 3233322322 23355677777766544322111110
Q ss_pred c-----ccHHHHHHhh--cCCcceEEEecCCChH
Q 001161 283 N-----IDLNFQSKKL--TRKKVLIVFDDVNHPR 309 (1134)
Q Consensus 283 ~-----~~~~~l~~~L--~~k~~LlVLDdv~~~~ 309 (1134)
. .....+.+++ .++.++||+|++....
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A 233 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTRLA 233 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHH
Confidence 0 0111122222 4789999999985443
No 283
>PRK10867 signal recognition particle protein; Provisional
Probab=95.98 E-value=0.12 Score=60.08 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=24.9
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
...+|.++|.+|+||||.|..++..++.+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 35789999999999999999988877655
No 284
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.98 E-value=0.045 Score=70.01 Aligned_cols=133 Identities=17% Similarity=0.181 Sum_probs=72.7
Q ss_pred CCccccchhHHHHHHhhccC-------CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHH
Q 001161 192 EDLVGVRLPMKEIESLLRTG-------STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDL 264 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 264 (1134)
..++|-+..++.+...+... ......+.++|+.|+|||+||+++++.+-..-...+.+ +..+..+......+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~-d~s~~~~~~~~~~l 587 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRL-DMSEYMEKHTVSKL 587 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEE-EchhccccccHHHh
Confidence 56889999999988776531 12234577899999999999999998764322222222 22222222222211
Q ss_pred HHHHHHHHhcCCCCCCCccccHHHHHHhhcCCc-ceEEEecCCCh--HHHHHHhcCcCCC-----------CCCcEEEEE
Q 001161 265 RQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKK-VLIVFDDVNHP--RQIKILVGRLDLL-----------ASGSRIIIT 330 (1134)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~-~LlVLDdv~~~--~~l~~l~~~~~~~-----------~~gsrIiiT 330 (1134)
.+........++ ...+.+.++.++ -+|+||+++.. +.++.|...+... -..+.||+|
T Consensus 588 --------~g~~~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 588 --------IGSPPGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred --------cCCCCcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 111111111111 223445556565 48899999753 4455555544321 133556677
Q ss_pred eCCh
Q 001161 331 TRDR 334 (1134)
Q Consensus 331 TR~~ 334 (1134)
|...
T Consensus 659 sn~g 662 (821)
T CHL00095 659 SNLG 662 (821)
T ss_pred CCcc
Confidence 6643
No 285
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.026 Score=60.20 Aligned_cols=110 Identities=16% Similarity=0.228 Sum_probs=63.1
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhh
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL 293 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L 293 (1134)
....++|||++|.|||-+|++|+..+.-.|-.++ ...-... ...+..+.|+++.
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~-----ss~lv~k---------------------yiGEsaRlIRemf 218 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVV-----SSALVDK---------------------YIGESARLIRDMF 218 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCceEEee-----Hhhhhhh---------------------hcccHHHHHHHHH
Confidence 3467999999999999999999988765552111 1110000 0011122233222
Q ss_pred ----cCCcceEEEecCCChH----------------HHHHHhcCcCCCC--CCcEEEEEeCChhhhhhc-----CCCeEE
Q 001161 294 ----TRKKVLIVFDDVNHPR----------------QIKILVGRLDLLA--SGSRIIITTRDRQVLANC-----GVDEVY 346 (1134)
Q Consensus 294 ----~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~~--~gsrIiiTTR~~~~~~~~-----~~~~~~ 346 (1134)
...++.|.+||++... .+-+|+..+..+. ...++|+||.+...+... .-+.-|
T Consensus 219 ~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~ 298 (388)
T KOG0651|consen 219 RYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKV 298 (388)
T ss_pred HHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCcccccee
Confidence 2356899999986321 1444555444332 457889999888665432 224456
Q ss_pred Eec
Q 001161 347 QMK 349 (1134)
Q Consensus 347 ~l~ 349 (1134)
+.+
T Consensus 299 ~iP 301 (388)
T KOG0651|consen 299 EIP 301 (388)
T ss_pred ccC
Confidence 666
No 286
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.91 E-value=0.023 Score=60.88 Aligned_cols=49 Identities=20% Similarity=0.186 Sum_probs=36.5
Q ss_pred HHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccC------Cceeeee
Q 001161 202 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF------AGSFFAR 250 (1134)
Q Consensus 202 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~ 250 (1134)
..|.++|..+-....++.|+|.+|.|||+||..++....... ..++|+.
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 455566654445678899999999999999999987655444 5667774
No 287
>PRK06696 uridine kinase; Validated
Probab=95.90 E-value=0.0093 Score=63.64 Aligned_cols=46 Identities=28% Similarity=0.358 Sum_probs=33.4
Q ss_pred cchhHHHHHHhhcc-CCCCeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 197 VRLPMKEIESLLRT-GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 197 r~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
|++.+++|.+.+.. ......+|+|.|.+|.||||+|+++++.+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34445555554432 23567899999999999999999999887543
No 288
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.032 Score=57.79 Aligned_cols=54 Identities=20% Similarity=0.354 Sum_probs=36.3
Q ss_pred ccccchhHHHHHHhhcc-----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeec
Q 001161 194 LVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNV 252 (1134)
Q Consensus 194 ~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~ 252 (1134)
+=|-..+++++.+.... +-+..+-|.++|++|.|||-+|++|+++- ..||+..+
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfirvi 243 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRVI 243 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEeeh
Confidence 44555566665554332 12344568999999999999999999874 45666443
No 289
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.16 Score=52.70 Aligned_cols=164 Identities=16% Similarity=0.214 Sum_probs=87.8
Q ss_pred CCccccchhHHHHHHhhccC-----------CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCC
Q 001161 192 EDLVGVRLPMKEIESLLRTG-----------STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGR 260 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 260 (1134)
.++=|.+..++++.+.+... -...+-|..+|++|.|||-+|++.+.+-...|- .-.+
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFL------------KLAg 238 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFL------------KLAG 238 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHH------------Hhcc
Confidence 34455555555555543321 123345889999999999999998865433331 0011
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccccHHHHHHhh----cCCcceEEEecCCChH--------------H--HHHHhcCcCC
Q 001161 261 LGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL----TRKKVLIVFDDVNHPR--------------Q--IKILVGRLDL 320 (1134)
Q Consensus 261 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L----~~k~~LlVLDdv~~~~--------------~--l~~l~~~~~~ 320 (1134)
..-+|.-+ .++...+++.+ ...+..|.+|.++... | .-.++..++.
T Consensus 239 PQLVQMfI--------------GdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDG 304 (424)
T KOG0652|consen 239 PQLVQMFI--------------GDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 304 (424)
T ss_pred hHHHhhhh--------------cchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcC
Confidence 11111111 11233333332 2467889999875321 1 3345555665
Q ss_pred CCCC--cEEEEEeCChhhh-----hhcCCCeEEEecCCCHHhHHHHHHHhhcCCC-CCCccHHHHHHHH
Q 001161 321 LASG--SRIIITTRDRQVL-----ANCGVDEVYQMKELVHDDALRLFSRHAFEGD-HPHESHTELACKI 381 (1134)
Q Consensus 321 ~~~g--srIiiTTR~~~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~-~~~~~~~~~~~~i 381 (1134)
+.+. .+||-.|..-.++ ..-..++.++.+.-+.+.-.+++.-|.-+-. .+.-+++++++.-
T Consensus 305 Fss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsT 373 (424)
T KOG0652|consen 305 FSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARST 373 (424)
T ss_pred CCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcc
Confidence 5544 4566666544443 2323456677776666666666666664433 4456677776543
No 290
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.84 E-value=0.024 Score=55.77 Aligned_cols=113 Identities=17% Similarity=0.170 Sum_probs=58.9
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhh
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL 293 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L 293 (1134)
.-.+++|.|..|.|||||++.++.... ...+.+++.......--.. -..-+...-.+...+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~~~~------------------lS~G~~~rv~laral 85 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGYFEQ------------------LSGGEKMRLALAKLL 85 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEEEcc------------------CCHHHHHHHHHHHHH
Confidence 446799999999999999999876432 2345555432100000000 000011122234455
Q ss_pred cCCcceEEEecCC---ChHHHHHHhcCcCCCCCCcEEEEEeCChhhhhhcCCCeEEEe
Q 001161 294 TRKKVLIVFDDVN---HPRQIKILVGRLDLLASGSRIIITTRDRQVLANCGVDEVYQM 348 (1134)
Q Consensus 294 ~~k~~LlVLDdv~---~~~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~~~~~~~~l 348 (1134)
..++-++++|+.. +....+.+...+... +..||++|.+...+... .++++.+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~-~d~v~~l 140 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQV-ATKIIEL 140 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHh-CCEEEEE
Confidence 6677799999863 222222222222111 24688888877665443 3455544
No 291
>PRK07667 uridine kinase; Provisional
Probab=95.83 E-value=0.015 Score=60.36 Aligned_cols=42 Identities=24% Similarity=0.431 Sum_probs=32.0
Q ss_pred HHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 201 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 201 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
++++.+.+........+|+|.|.+|.||||+|+.+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 344555555444556899999999999999999999877543
No 292
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.81 E-value=0.095 Score=63.91 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=41.0
Q ss_pred CccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 189 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
.....++|....++++.+.+..-.....-|.|+|..|.|||++|+.+++.-
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 345689999999999888776543334458899999999999999998753
No 293
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.80 E-value=0.041 Score=61.63 Aligned_cols=29 Identities=28% Similarity=0.509 Sum_probs=25.5
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
+..+++++|++|+||||++..++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999999877654
No 294
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.80 E-value=0.093 Score=61.00 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=23.2
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
..++.++|.+|+||||.|..++..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57899999999999999999988765
No 295
>PRK05973 replicative DNA helicase; Provisional
Probab=95.75 E-value=0.052 Score=57.68 Aligned_cols=37 Identities=14% Similarity=-0.022 Sum_probs=28.9
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
....++.|.|.+|+|||++|.+++.....+-..++|+
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyf 98 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFF 98 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 4557899999999999999999887665554455665
No 296
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.73 E-value=0.015 Score=60.25 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=26.0
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
++|.++|+.|+||||.+.+++.+++.+-..+..+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~li 35 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALI 35 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceee
Confidence 6899999999999999999888776663334444
No 297
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.73 E-value=0.17 Score=59.10 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=26.5
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHh--ccCCceeee
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKIS--RHFAGSFFA 249 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~ 249 (1134)
.++++++|++|+||||++..++..+. ..-..+.++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li 257 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALI 257 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 46899999999999999999887665 333344444
No 298
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.72 E-value=0.033 Score=60.80 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=30.1
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeee
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFAR 250 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1134)
..-.++.|.|.+|.|||++|.+++.....+-+.++|+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45678999999999999999998776544555677774
No 299
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.69 E-value=0.025 Score=67.02 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=48.9
Q ss_pred CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHH
Q 001161 212 STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSK 291 (1134)
Q Consensus 212 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~ 291 (1134)
.+.-++..++|++|+||||||..++++. .|. +..+ ..++......+-+.+...+.......
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa--GYs----VvEI-NASDeRt~~~v~~kI~~avq~~s~l~------------ 383 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA--GYS----VVEI-NASDERTAPMVKEKIENAVQNHSVLD------------ 383 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc--Cce----EEEe-cccccccHHHHHHHHHHHHhhccccc------------
Confidence 3567899999999999999999988762 221 1111 33444455555555554443322111
Q ss_pred hhcCCcceEEEecCCChH
Q 001161 292 KLTRKKVLIVFDDVNHPR 309 (1134)
Q Consensus 292 ~L~~k~~LlVLDdv~~~~ 309 (1134)
...++.-+|+|.++...
T Consensus 384 -adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 384 -ADSRPVCLVIDEIDGAP 400 (877)
T ss_pred -cCCCcceEEEecccCCc
Confidence 02588899999997654
No 300
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.66 E-value=0.011 Score=69.30 Aligned_cols=51 Identities=25% Similarity=0.296 Sum_probs=41.9
Q ss_pred cCCccccchhHHHHHHhhc----cCCCCeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 191 NEDLVGVRLPMKEIESLLR----TGSTNVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 191 ~~~~vGr~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
.++++|+++.++++.+.|. .-....+++.++|++|+||||||+.+++-+..
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3468999999999998883 23355689999999999999999999985543
No 301
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.64 E-value=0.024 Score=63.03 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=39.3
Q ss_pred hHHHHHHhhc-cCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeee
Q 001161 200 PMKEIESLLR-TGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARN 251 (1134)
Q Consensus 200 ~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 251 (1134)
-...|..+|. .+=+.-+++-|+|++|+||||||.+++......-..++|++.
T Consensus 39 Gi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~ 91 (325)
T cd00983 39 GSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA 91 (325)
T ss_pred CCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence 3455666775 344567889999999999999999988776666667778753
No 302
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.62 E-value=0.035 Score=65.44 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=39.7
Q ss_pred chhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeee
Q 001161 198 RLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFAR 250 (1134)
Q Consensus 198 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1134)
..-+.++.+.|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 77 ~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 77 SSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred ccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 34456777777655456688999999999999999999887665544566763
No 303
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.16 Score=52.46 Aligned_cols=146 Identities=18% Similarity=0.256 Sum_probs=80.2
Q ss_pred CccccchhHHHHHHhhcc-----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCH
Q 001161 193 DLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRL 261 (1134)
Q Consensus 193 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 261 (1134)
++=|.+-..+++.+.... +-+..|-|.++|++|.|||.||+++++.-...| +..++ -
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f-----irvvg-------s 223 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF-----IRVVG-------S 223 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe-----eeecc-------H
Confidence 455667666666665433 224567799999999999999999998655444 32221 1
Q ss_pred HHHHHHHHHHHhcCCCCCCCccccHHHHHHh----hcCCcceEEEecCCChH--------------H--HHHHhcCcCCC
Q 001161 262 GDLRQQLLSTLLNDGNVKNFPNIDLNFQSKK----LTRKKVLIVFDDVNHPR--------------Q--IKILVGRLDLL 321 (1134)
Q Consensus 262 ~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~~~--------------~--l~~l~~~~~~~ 321 (1134)
+-+++-+ ++ +.+++++. -.+.+..|.+|.++... | +-+++...+.+
T Consensus 224 efvqkyl-----ge---------gprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgf 289 (408)
T KOG0727|consen 224 EFVQKYL-----GE---------GPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGF 289 (408)
T ss_pred HHHHHHh-----cc---------CcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCc
Confidence 1112211 11 12222222 23467788899876431 1 33444444444
Q ss_pred C--CCcEEEEEeCChhh-----hhhcCCCeEEEecCCCHHhHHHHHHHhh
Q 001161 322 A--SGSRIIITTRDRQV-----LANCGVDEVYQMKELVHDDALRLFSRHA 364 (1134)
Q Consensus 322 ~--~gsrIiiTTR~~~~-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1134)
. ...++|+.|..... +..-..++.++.+--+..+-.-.|....
T Consensus 290 dq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~tit 339 (408)
T KOG0727|consen 290 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT 339 (408)
T ss_pred CcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhh
Confidence 3 45678887754433 2222335567777555555555565544
No 304
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.54 E-value=0.053 Score=53.69 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.6
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
+|.|+|.+|.||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998765
No 305
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.53 E-value=0.019 Score=56.57 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=29.4
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
.+|.|+|.+|.||||||+++.+++...-..+.++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~L 36 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLL 36 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 5799999999999999999999998877666666
No 306
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.52 E-value=0.022 Score=61.36 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=34.7
Q ss_pred HHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc------CCceeeee
Q 001161 202 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH------FAGSFFAR 250 (1134)
Q Consensus 202 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~ 250 (1134)
..|.++|..+-....++.|+|.+|.|||++|.+++...... -..++|+.
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 34555565444566889999999999999999987543222 25677774
No 307
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.51 E-value=0.14 Score=58.80 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=23.6
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
..++|.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999988665
No 308
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.51 E-value=0.026 Score=62.70 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=38.3
Q ss_pred HHHHHHhhc-cCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeee
Q 001161 201 MKEIESLLR-TGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARN 251 (1134)
Q Consensus 201 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 251 (1134)
...|..+|. .+-..-+++.|+|++|+||||||.+++......-..++|++.
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~ 91 (321)
T TIGR02012 40 SLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 91 (321)
T ss_pred CHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Confidence 445666665 344667899999999999999999988776655566777743
No 309
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=95.49 E-value=0.048 Score=64.15 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=20.0
Q ss_pred eEEEEEecCCChHHHHHHHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
..|+|+|.+|+|||||..++...
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~~ 226 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLKQ 226 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35889999999999999998863
No 310
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.47 E-value=0.1 Score=53.72 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.8
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
+|.|.|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998765
No 311
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.47 E-value=0.023 Score=56.93 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=24.5
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccCC
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHFA 244 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 244 (1134)
+.|.++|.+|+||||+|++++..+++.-.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~ 30 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIW 30 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhh
Confidence 45789999999999999999987766543
No 312
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.44 E-value=0.047 Score=64.32 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=38.3
Q ss_pred hHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeee
Q 001161 200 PMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFAR 250 (1134)
Q Consensus 200 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1134)
-+.++.+.|..+-....++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 65 Gi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 65 GIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred CcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 445666777654455678999999999999999999987765444567763
No 313
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.12 Score=58.72 Aligned_cols=152 Identities=17% Similarity=0.200 Sum_probs=81.2
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcC
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTR 295 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~ 295 (1134)
|--.++|+||.|||++..++++.+ +.-++.-...++..... ++.|+.. ..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L----~ydIydLeLt~v~~n~d----Lr~LL~~----------------------t~ 285 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL----NYDIYDLELTEVKLDSD----LRHLLLA----------------------TP 285 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc----CCceEEeeeccccCcHH----HHHHHHh----------------------CC
Confidence 446799999999999999999764 22233322222211111 1222111 23
Q ss_pred CcceEEEecCCChHH--------------------HHHHhcCcC--CCCC-CcEE-EEEeCChhhhhhc-----CCCeEE
Q 001161 296 KKVLIVFDDVNHPRQ--------------------IKILVGRLD--LLAS-GSRI-IITTRDRQVLANC-----GVDEVY 346 (1134)
Q Consensus 296 k~~LlVLDdv~~~~~--------------------l~~l~~~~~--~~~~-gsrI-iiTTR~~~~~~~~-----~~~~~~ 346 (1134)
.|-+||+.|++..-+ +--|+..++ |... +-|| |.||-..+-+... ..+--+
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI 365 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHI 365 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEE
Confidence 556777888764311 111222222 1122 2355 5677766543322 334567
Q ss_pred EecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHHH-HhcCC
Q 001161 347 QMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLGR-YLYGK 402 (1134)
Q Consensus 347 ~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~-~L~~~ 402 (1134)
.++--+.+.-..||.++..... + ..++.+|.+...|.-+.=..++. ++..+
T Consensus 366 ~mgyCtf~~fK~La~nYL~~~~-~----h~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 366 YMGYCTFEAFKTLASNYLGIEE-D----HRLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred EcCCCCHHHHHHHHHHhcCCCC-C----cchhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 8899999999999998873322 2 23455555555555444344444 44444
No 314
>PRK09354 recA recombinase A; Provisional
Probab=95.42 E-value=0.046 Score=61.30 Aligned_cols=52 Identities=19% Similarity=0.163 Sum_probs=39.9
Q ss_pred hHHHHHHhhc-cCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeee
Q 001161 200 PMKEIESLLR-TGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARN 251 (1134)
Q Consensus 200 ~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 251 (1134)
-...|..+|. .+-..-+++-|+|++|.||||||.+++......-..++|++.
T Consensus 44 Gi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~ 96 (349)
T PRK09354 44 GSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 96 (349)
T ss_pred CcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECC
Confidence 3456667776 444567899999999999999999988776666677788853
No 315
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.38 E-value=0.044 Score=58.55 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=31.4
Q ss_pred HHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 203 EIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 203 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
.+.+.+..+-....++.|.|.+|.||||+|.+++.....+-..++|+
T Consensus 12 ~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi 58 (230)
T PRK08533 12 ELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYV 58 (230)
T ss_pred eeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 34444443334556899999999999999877766553333455665
No 316
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.36 E-value=0.014 Score=56.14 Aligned_cols=22 Identities=50% Similarity=0.761 Sum_probs=20.5
Q ss_pred EEEEecCCChHHHHHHHHHHHH
Q 001161 218 LGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 218 v~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
|+|.|++|+||||+|+++..++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999875
No 317
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.35 E-value=0.1 Score=55.88 Aligned_cols=50 Identities=20% Similarity=0.223 Sum_probs=35.9
Q ss_pred HHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeee
Q 001161 201 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFAR 250 (1134)
Q Consensus 201 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1134)
+..|.++|..+=..-.++.|.|.+|.||||+|.+++.....+-..++|+.
T Consensus 6 i~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 6 VEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 34555566444455678999999999999999988765444455677774
No 318
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.34 E-value=0.051 Score=52.19 Aligned_cols=59 Identities=14% Similarity=0.084 Sum_probs=20.2
Q ss_pred ccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEcc
Q 001161 722 IECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAV 782 (1134)
Q Consensus 722 ~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~ 782 (1134)
|.++++|+.+.+.. .+...-...|.++++|+.+.+.++ +...-...|.++++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 44455555555543 222222233445555555555442 222222234444444544443
No 319
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.013 Score=68.94 Aligned_cols=52 Identities=33% Similarity=0.422 Sum_probs=44.2
Q ss_pred CCccccchhHHHHHHhhcc----CCCCeeEEEEEecCCChHHHHHHHHHHHHhccC
Q 001161 192 EDLVGVRLPMKEIESLLRT----GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF 243 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1134)
++-+|+++..+.+.+++.. ++.+..+++.+|++|+|||.+|+.++..+..+|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 4578999999999988765 345678999999999999999999999887666
No 320
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.33 E-value=0.066 Score=54.97 Aligned_cols=132 Identities=16% Similarity=0.182 Sum_probs=65.6
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeec--hhHhh---cCCHHHHHHHHHHHHhcCC-----CCCCC-c
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNV--REAEE---TGRLGDLRQQLLSTLLNDG-----NVKNF-P 282 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~--~~~~~---~~~~~~l~~~ll~~l~~~~-----~~~~~-~ 282 (1134)
.-.+++|.|..|.|||||++.++-.. ....+.+++... ..... ...+.. ..+++..+.-.. ...-+ -
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~-~~~~G~v~~~g~~~~~~~~~~~~~~i~~-~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL-KPSSGEILLDGKDLASLSPKELARKIAY-VPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCcCCHHHHHHHHhH-HHHHHHHcCCHhHhcCCcccCCHH
Confidence 44679999999999999999988643 234555555321 10000 001111 111233222111 01111 1
Q ss_pred cccHHHHHHhhcCCcceEEEecCCC---hHHHHHHhcCcCCC-CC-CcEEEEEeCChhhhhhcCCCeEEEe
Q 001161 283 NIDLNFQSKKLTRKKVLIVFDDVNH---PRQIKILVGRLDLL-AS-GSRIIITTRDRQVLANCGVDEVYQM 348 (1134)
Q Consensus 283 ~~~~~~l~~~L~~k~~LlVLDdv~~---~~~l~~l~~~~~~~-~~-gsrIiiTTR~~~~~~~~~~~~~~~l 348 (1134)
+...-.+...+...+-++++|+... .+..+.+...+... .. +..||++|.+...+... .++++.+
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l 171 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARY-ADRVILL 171 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 1112234455667888999998632 22222222222111 22 67888888887665433 3455544
No 321
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.32 E-value=0.1 Score=54.28 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=28.8
Q ss_pred HHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 201 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 201 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
.+.+...+. .+-+++.|.|.+|.||||+++.+...+...
T Consensus 7 ~~a~~~~l~---~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 7 REAVRAILT---SGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHHH---CTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh---cCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 344444554 234678899999999999999988876654
No 322
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.32 E-value=0.097 Score=51.98 Aligned_cols=91 Identities=19% Similarity=0.176 Sum_probs=47.6
Q ss_pred EEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcC--Cc
Q 001161 220 IWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTR--KK 297 (1134)
Q Consensus 220 I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~--k~ 297 (1134)
|.|+||+||||+|+.++.++ .|.....-.-++......+ .+.+++-..+.... ....+.....+++++.. ..
T Consensus 1 i~G~PgsGK~t~~~~la~~~--~~~~is~~~llr~~~~~~s--~~g~~i~~~l~~g~--~vp~~~v~~ll~~~l~~~~~~ 74 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY--GLVHISVGDLLREEIKSDS--ELGKQIQEYLDNGE--LVPDELVIELLKERLEQPPCN 74 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH--TSEEEEHHHHHHHHHHTTS--HHHHHHHHHHHTTS--S--HHHHHHHHHHHHHSGGTT
T ss_pred CcCCCCCChHHHHHHHHHhc--CcceechHHHHHHHHhhhh--HHHHHHHHHHHhhc--cchHHHHHHHHHHHHhhhccc
Confidence 68999999999999999875 3332222222222222211 11222222222211 12223345556665543 35
Q ss_pred ceEEEecC-CChHHHHHHhc
Q 001161 298 VLIVFDDV-NHPRQIKILVG 316 (1134)
Q Consensus 298 ~LlVLDdv-~~~~~l~~l~~ 316 (1134)
--+|||+. .+.+|.+.+..
T Consensus 75 ~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 75 RGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp TEEEEESB-SSHHHHHHHHH
T ss_pred ceeeeeeccccHHHHHHHHH
Confidence 66889998 55666666654
No 323
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.28 E-value=0.13 Score=58.24 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=37.4
Q ss_pred CCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHH
Q 001161 192 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
+.++|....+.++.+.+..-...-.-|.|+|..|.||+++|+.+..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 4689999999988887765433344589999999999999999875
No 324
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.28 E-value=0.063 Score=59.30 Aligned_cols=54 Identities=13% Similarity=-0.039 Sum_probs=36.3
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHhcc-CCceeeeeechhHhhcCCHHHHHHHHHHHH
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKISRH-FAGSFFARNVREAEETGRLGDLRQQLLSTL 272 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 272 (1134)
....++.|.|.+|+||||+|.+++.....+ -..++|+. -.....++...+...+
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS------~E~~~~~~~~r~~~~~ 82 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS------LEEPVVRTARRLLGQY 82 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE------cccCHHHHHHHHHHHH
Confidence 345678999999999999999998876544 44566663 2223445555554443
No 325
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.07 Score=63.54 Aligned_cols=151 Identities=19% Similarity=0.170 Sum_probs=84.7
Q ss_pred ccCCccccchhHHHHHHhhc---cCC-------CCeeEEEEEecCCChHHHHHHHHHHHHhccCC---ceeeeeechhHh
Q 001161 190 ENEDLVGVRLPMKEIESLLR---TGS-------TNVYKLGIWGIGGIGKTTIAGAIFSKISRHFA---GSFFARNVREAE 256 (1134)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~L~---~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~~~~~~~~~~ 256 (1134)
...+.-|.|...+++.+.++ ... .-.+-|.++|++|.|||.||++++-...-.|- +.-|+. ..
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe----mf 223 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE----MF 223 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh----hh
Confidence 34567787776666555443 221 22345899999999999999999975433331 111110 00
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH----------------HHHHHhcCcCC
Q 001161 257 ETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR----------------QIKILVGRLDL 320 (1134)
Q Consensus 257 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~ 320 (1134)
.............+..++.++.|++|.++... .+..+....+.
T Consensus 224 ---------------------VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDG 282 (596)
T COG0465 224 ---------------------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG 282 (596)
T ss_pred ---------------------cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhcc
Confidence 00001111223334445668999999875321 25666767676
Q ss_pred CCCCc--EEEEEeCChhhhh-----hcCCCeEEEecCCCHHhHHHHHHHhhc
Q 001161 321 LASGS--RIIITTRDRQVLA-----NCGVDEVYQMKELVHDDALRLFSRHAF 365 (1134)
Q Consensus 321 ~~~gs--rIiiTTR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af 365 (1134)
++.+. .|+-.|-..+|+. .-..++.+.++..+-..-.+.+.-|+-
T Consensus 283 F~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~ 334 (596)
T COG0465 283 FGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAK 334 (596)
T ss_pred CCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhh
Confidence 66333 3333344344432 223456777877777777777776663
No 326
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.25 E-value=0.027 Score=56.78 Aligned_cols=79 Identities=9% Similarity=-0.011 Sum_probs=43.9
Q ss_pred EEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcC--
Q 001161 218 LGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTR-- 295 (1134)
Q Consensus 218 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~-- 295 (1134)
+.|.|.+|.|||++|.+++.. .....+|+... ...+. ++++.+..- ...........+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~----~~~d~-em~~rI~~H-~~~R~~~w~t~E~~~~l~~~l~~~~ 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATA----EAFDD-EMAERIARH-RKRRPAHWRTIETPRDLVSALKELD 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEcc----CcCCH-HHHHHHHHH-HHhCCCCceEeecHHHHHHHHHhcC
Confidence 679999999999999998765 23456666322 22222 344443332 11222223333444445555532
Q ss_pred CcceEEEecC
Q 001161 296 KKVLIVFDDV 305 (1134)
Q Consensus 296 k~~LlVLDdv 305 (1134)
+.-.+++|.+
T Consensus 73 ~~~~VLIDcl 82 (169)
T cd00544 73 PGDVVLIDCL 82 (169)
T ss_pred CCCEEEEEcH
Confidence 3347999985
No 327
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.23 E-value=0.053 Score=55.20 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.9
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
.|.|.|.+|.||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999874
No 328
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.23 E-value=0.064 Score=53.73 Aligned_cols=118 Identities=15% Similarity=0.056 Sum_probs=59.1
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCC----CCCC-------ccc
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGN----VKNF-------PNI 284 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~----~~~~-------~~~ 284 (1134)
..|-|++-.|.||||.|..++-+...+=-.++.+.-+... ...+-....+.+.-.+..... ...+ ...
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~-~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA-WPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-cccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 5678888899999999998887655443333322222111 112222222222000000000 0001 112
Q ss_pred cHHHHHHhhcCCc-ceEEEecCCChH-----HHHHHhcCcCCCCCCcEEEEEeCCh
Q 001161 285 DLNFQSKKLTRKK-VLIVFDDVNHPR-----QIKILVGRLDLLASGSRIIITTRDR 334 (1134)
Q Consensus 285 ~~~~l~~~L~~k~-~LlVLDdv~~~~-----~l~~l~~~~~~~~~gsrIiiTTR~~ 334 (1134)
.....++.+...+ =|+|||.+-..- ..+.+...+....++..||+|-|+.
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 3344455555544 499999874221 1222332233335778999999987
No 329
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.22 E-value=0.041 Score=62.70 Aligned_cols=108 Identities=16% Similarity=0.159 Sum_probs=62.8
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhccCCceeeee-echhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhh
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFAR-NVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL 293 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L 293 (1134)
...|.|.|+.|.||||+++++...+.......++.. +..+...... .. +................++..|
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~-----~~----~i~q~evg~~~~~~~~~l~~~l 192 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNK-----RS----LINQREVGLDTLSFANALRAAL 192 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCc-----cc----eEEccccCCCCcCHHHHHHHhh
Confidence 357999999999999999999887765555544431 1111100000 00 0001111111223456677888
Q ss_pred cCCcceEEEecCCChHHHHHHhcCcCCCCCCcEEEEEeCCh
Q 001161 294 TRKKVLIVFDDVNHPRQIKILVGRLDLLASGSRIIITTRDR 334 (1134)
Q Consensus 294 ~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIiiTTR~~ 334 (1134)
+..+=.|++|.+.+.+.+....... ..|-.++.|.-..
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTN 230 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCC
Confidence 8999999999998887766533321 3455555555443
No 330
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.19 E-value=0.032 Score=64.81 Aligned_cols=45 Identities=18% Similarity=0.133 Sum_probs=38.1
Q ss_pred CCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 192 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
..++||+..++.+...+..+. -|.|.|++|+|||++|+.+.....
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHHhc
Confidence 368999999999988776443 389999999999999999998654
No 331
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.16 E-value=0.012 Score=55.10 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=20.9
Q ss_pred EEEEecCCChHHHHHHHHHHHHhccCCce
Q 001161 218 LGIWGIGGIGKTTIAGAIFSKISRHFAGS 246 (1134)
Q Consensus 218 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~ 246 (1134)
|.|+|.+|+||||+|++++..+...|..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 68999999999999999999888777543
No 332
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.15 E-value=0.054 Score=59.11 Aligned_cols=102 Identities=14% Similarity=0.087 Sum_probs=59.1
Q ss_pred HHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCC
Q 001161 201 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKN 280 (1134)
Q Consensus 201 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~ 280 (1134)
++.+.+++. ....+|.|.|..|.||||+++++.+.+...-...+.+.+..+. .+..+ .++.-.. .
T Consensus 69 ~~~l~~~~~---~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~----~~~~~-----~q~~v~~---~ 133 (264)
T cd01129 69 LEIFRKLLE---KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEY----QIPGI-----NQVQVNE---K 133 (264)
T ss_pred HHHHHHHHh---cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCcee----cCCCc-----eEEEeCC---c
Confidence 344555553 2235799999999999999999887764422233444322111 11100 0000000 0
Q ss_pred CccccHHHHHHhhcCCcceEEEecCCChHHHHHHhcC
Q 001161 281 FPNIDLNFQSKKLTRKKVLIVFDDVNHPRQIKILVGR 317 (1134)
Q Consensus 281 ~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~l~~l~~~ 317 (1134)
........++..++..+=.|+++++.+.+....+...
T Consensus 134 ~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 134 AGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred CCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 0112356777888889999999999998876554433
No 333
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.14 E-value=0.018 Score=59.96 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=23.4
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
+|+|.|.+|.||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999987643
No 334
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.13 E-value=0.072 Score=53.85 Aligned_cols=128 Identities=20% Similarity=0.142 Sum_probs=61.9
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeee---chhHhhcCCH--HHHHHHHHHHHhcCCCCCCCccccHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARN---VREAEETGRL--GDLRQQLLSTLLNDGNVKNFPNIDLNF 288 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~---~~~~~~~~~~--~~l~~~ll~~l~~~~~~~~~~~~~~~~ 288 (1134)
.-.+++|+|..|.|||||++.++-.... ..+.+++.. +.-..+...+ ..+.+.+... ....-..-+...-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 3467999999999999999999864322 223333211 0000111111 1222222110 11111111222233
Q ss_pred HHHhhcCCcceEEEecCCC---hHHHHHHhcCcCCCCCCcEEEEEeCChhhhhhcCCCeEEEec
Q 001161 289 QSKKLTRKKVLIVFDDVNH---PRQIKILVGRLDLLASGSRIIITTRDRQVLANCGVDEVYQMK 349 (1134)
Q Consensus 289 l~~~L~~k~~LlVLDdv~~---~~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~~~~~~~~l~ 349 (1134)
+.+.+..++=++++|+-.. .+..+.+...+... +..||++|.+..... ..++++.++
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~--~~d~i~~l~ 161 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK--FHDRVLDLD 161 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh--hCCEEEEEc
Confidence 4455667788999997532 22222222222111 356888888876543 245666553
No 335
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.11 E-value=0.032 Score=64.30 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=23.5
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
...+|.+.|.+|+||||+|.+++.++
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~l 279 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRL 279 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 46889999999999999999999765
No 336
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.10 E-value=0.15 Score=57.61 Aligned_cols=45 Identities=22% Similarity=0.170 Sum_probs=34.2
Q ss_pred ccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHH
Q 001161 194 LVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 194 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
+||....++++.+.+..-...-.-|.|+|..|.||+++|+.++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 467777777777666553333445899999999999999998864
No 337
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.10 E-value=0.038 Score=55.68 Aligned_cols=127 Identities=16% Similarity=0.200 Sum_probs=62.8
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhh
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL 293 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L 293 (1134)
.-.+++|.|..|.|||||.+.++-.. ....+.+++.... .. .....+..++ .+..... -..-+...-.+...+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g~~-~~-~~~~~~~~~~---~i~~~~q-LS~G~~qrl~laral 97 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY-KPDSGEILVDGKE-VS-FASPRDARRA---GIAMVYQ-LSVGERQMVEIARAL 97 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEE-CC-cCCHHHHHhc---CeEEEEe-cCHHHHHHHHHHHHH
Confidence 34579999999999999999987543 2344555553211 00 0011010000 0000000 000111122344556
Q ss_pred cCCcceEEEecCCC---hHHHHHHhcCcCCC-CCCcEEEEEeCChhhhhhcCCCeEEEe
Q 001161 294 TRKKVLIVFDDVNH---PRQIKILVGRLDLL-ASGSRIIITTRDRQVLANCGVDEVYQM 348 (1134)
Q Consensus 294 ~~k~~LlVLDdv~~---~~~l~~l~~~~~~~-~~gsrIiiTTR~~~~~~~~~~~~~~~l 348 (1134)
..++-++++|+... ....+.+...+... ..|..||++|.+...+... .++++.+
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l 155 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEI-ADRVTVL 155 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 66788999998632 22222222222111 3467788899887654433 3455544
No 338
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.08 E-value=0.024 Score=55.73 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=20.8
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
+|.+.|++|.||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999886543
No 339
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.06 E-value=0.53 Score=49.79 Aligned_cols=209 Identities=12% Similarity=0.170 Sum_probs=115.1
Q ss_pred cCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhc------cCCceeeeeechh----------
Q 001161 191 NEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISR------HFAGSFFARNVRE---------- 254 (1134)
Q Consensus 191 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~~~~~---------- 254 (1134)
.+.+.++++....+..+.. ..+..-..++|+.|.||-|.+.++.+++-. +-+...|......
T Consensus 12 l~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~ 89 (351)
T KOG2035|consen 12 LDELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSN 89 (351)
T ss_pred hhhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEeccc
Confidence 3446677777777766654 345678899999999999999988876432 2233344321111
Q ss_pred ------HhhcCC-HHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcc-eEEEecCCCh--HHHHHHhcCcCCCCCC
Q 001161 255 ------AEETGR-LGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKV-LIVFDDVNHP--RQIKILVGRLDLLASG 324 (1134)
Q Consensus 255 ------~~~~~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVLDdv~~~--~~l~~l~~~~~~~~~g 324 (1134)
.++... -.-+.++++.++........ -..+.+ ++|+-.++.. +.-.+|.....-....
T Consensus 90 yHlEitPSDaG~~DRvViQellKevAQt~qie~------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~ 157 (351)
T KOG2035|consen 90 YHLEITPSDAGNYDRVVIQELLKEVAQTQQIET------------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSN 157 (351)
T ss_pred ceEEeChhhcCcccHHHHHHHHHHHHhhcchhh------------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcC
Confidence 011111 11344445554433222110 112333 5666666543 2233343333334567
Q ss_pred cEEEEEeCChh-hhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHhc--
Q 001161 325 SRIIITTRDRQ-VLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLGRYLY-- 400 (1134)
Q Consensus 325 srIiiTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~-- 400 (1134)
+|+|+....-. +.... ..--.+.++..+++|....+++.+-+..-..+ .+++.+|+++++|+---...+-..++
T Consensus 158 ~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 158 CRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVN 235 (351)
T ss_pred ceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 88877543321 11111 12235789999999999999987744332222 78999999999997432222222221
Q ss_pred C-----C----CHHHHHHHHHHHH
Q 001161 401 G-----K----RREVWENAISKWE 415 (1134)
Q Consensus 401 ~-----~----~~~~w~~~l~~l~ 415 (1134)
+ . ...+|+-.+.+..
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHH
Confidence 1 1 3467998887653
No 340
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.06 E-value=0.051 Score=55.24 Aligned_cols=118 Identities=15% Similarity=0.061 Sum_probs=61.0
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHH--h--cCC--CCCCC-------
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTL--L--NDG--NVKNF------- 281 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l--~--~~~--~~~~~------- 281 (1134)
...|.|+|-.|-||||.|..++-+...+=-.+.++.-+.... ..+-....+.+- .+ . ... ....+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~-~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW-STGERNLLEFGG-GVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC-ccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHHHHH
Confidence 457899999999999999998876554433333332222211 122222222210 00 0 000 00001
Q ss_pred ccccHHHHHHhhcCCc-ceEEEecCCChH-----HHHHHhcCcCCCCCCcEEEEEeCCh
Q 001161 282 PNIDLNFQSKKLTRKK-VLIVFDDVNHPR-----QIKILVGRLDLLASGSRIIITTRDR 334 (1134)
Q Consensus 282 ~~~~~~~l~~~L~~k~-~LlVLDdv~~~~-----~l~~l~~~~~~~~~gsrIiiTTR~~ 334 (1134)
.....+..++.+...+ =|+|||.+-..- ..+.+...+....++..||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1122334455555544 499999974322 1333333333346778999999977
No 341
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.06 E-value=0.4 Score=56.57 Aligned_cols=73 Identities=22% Similarity=0.242 Sum_probs=49.7
Q ss_pred CccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHh-ccCCceeeeeechhHhhcCCHHHHHHHHHHH
Q 001161 193 DLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKIS-RHFAGSFFARNVREAEETGRLGDLRQQLLST 271 (1134)
Q Consensus 193 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 271 (1134)
...|...-...|.+++. +-....++.|.|.+|+|||++|..++..+. .+-..++|+ +-+....++..+++..
T Consensus 173 ~~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~f------SlEm~~~~l~~Rl~~~ 245 (421)
T TIGR03600 173 ELTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFF------SLEMSAEQLGERLLAS 245 (421)
T ss_pred CCcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEE------ECCCCHHHHHHHHHHH
Confidence 35666777777777664 444556899999999999999999987664 322344555 3344566677776665
Q ss_pred H
Q 001161 272 L 272 (1134)
Q Consensus 272 l 272 (1134)
.
T Consensus 246 ~ 246 (421)
T TIGR03600 246 K 246 (421)
T ss_pred H
Confidence 4
No 342
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.06 E-value=0.067 Score=54.47 Aligned_cols=114 Identities=17% Similarity=0.121 Sum_probs=59.3
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeec--hhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHh
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNV--REAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKK 292 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~ 292 (1134)
-.+++|.|..|.|||||++.++-... ...+.+++... ....+... -..-+...-.+...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~lara 85 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAAA 85 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHHH
Confidence 45799999999999999998876432 23344444221 00000000 00001112234455
Q ss_pred hcCCcceEEEecCCC---hHH---HHHHhcCcCCCCCCcEEEEEeCChhhhhhcCCCeEEEec
Q 001161 293 LTRKKVLIVFDDVNH---PRQ---IKILVGRLDLLASGSRIIITTRDRQVLANCGVDEVYQMK 349 (1134)
Q Consensus 293 L~~k~~LlVLDdv~~---~~~---l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~~~~~~~~l~ 349 (1134)
+..++-++++|+-.. ... +..+...+.. ..+..||++|.+...+... .+.++.+.
T Consensus 86 l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~-~d~i~~l~ 146 (177)
T cd03222 86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLDYL-SDRIHVFE 146 (177)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHh-CCEEEEEc
Confidence 666788999998632 222 2222222111 1235688888877665543 34555554
No 343
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.03 E-value=0.044 Score=55.90 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=25.6
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
++.++|++|.||||+++.++..+...-..++.+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i 34 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLV 34 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 578999999999999999998776652233333
No 344
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.72 Score=49.17 Aligned_cols=172 Identities=16% Similarity=0.215 Sum_probs=89.9
Q ss_pred CCccccchhHHHHHHhhcc----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCH
Q 001161 192 EDLVGVRLPMKEIESLLRT----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRL 261 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 261 (1134)
.++-|.+...+.|.+.... ....-+-|.++|++|.||+-||++|+.+...- +|-...
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST----FFSvSS--------- 199 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST----FFSVSS--------- 199 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc----eEEeeh---------
Confidence 4577888888888775432 22346779999999999999999999764322 222111
Q ss_pred HHHHHHHHHHHhcCCCCCCCccccHHHHHHhh-cCCcceEEEecCCCh---------HHHHHHh----cCc---CCCCCC
Q 001161 262 GDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL-TRKKVLIVFDDVNHP---------RQIKILV----GRL---DLLASG 324 (1134)
Q Consensus 262 ~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~---------~~l~~l~----~~~---~~~~~g 324 (1134)
.++....+ ++ .+.+...+.+.. .+|+-+|.+|.|+.. +..+.+. -.. .....|
T Consensus 200 SDLvSKWm----GE------SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 200 SDLVSKWM----GE------SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred HHHHHHHh----cc------HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCc
Confidence 01111111 00 011122222222 368889999998643 1122211 111 112345
Q ss_pred cEEEEEeCChhhhhhc---CCCeEEEecCCCHHhH-HHHHHHhhcCCCCCCccHHHHHHHHHHHhcCCh
Q 001161 325 SRIIITTRDRQVLANC---GVDEVYQMKELVHDDA-LRLFSRHAFEGDHPHESHTELACKIIKYARGVP 389 (1134)
Q Consensus 325 srIiiTTR~~~~~~~~---~~~~~~~l~~L~~~ea-~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 389 (1134)
.-|+-.|..+.++... .....+-++ |++..| ..+|.-+.. ..+..-.....+++.+++.|.-
T Consensus 270 vLVLgATNiPw~LDsAIRRRFekRIYIP-LPe~~AR~~MF~lhlG--~tp~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRRRFEKRIYIP-LPEAHARARMFKLHLG--DTPHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred eEEEecCCCchhHHHHHHHHhhcceecc-CCcHHHhhhhheeccC--CCccccchhhHHHHHhhcCCCC
Confidence 5566677777665432 122333343 444444 456777663 3333333444556666666643
No 345
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.98 E-value=0.071 Score=58.00 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=22.6
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
.|.++|++|.||||+|++++..+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999877544
No 346
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.97 E-value=0.38 Score=54.23 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=28.3
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
.+.++++++|+.|+||||++..++..+..+-..+.++
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lI 240 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFI 240 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 3468899999999999999999987665443344444
No 347
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.97 E-value=0.093 Score=53.35 Aligned_cols=126 Identities=17% Similarity=0.233 Sum_probs=64.2
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCC--------CC-ccc
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVK--------NF-PNI 284 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~--------~~-~~~ 284 (1134)
.-.+++|.|..|.|||||.+.++-... ...+.+++.... ... .......+.+ .-+..+.... -+ -+.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~-~~~-~~~~~~~~~i-~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVD-LRD-LDLESLRKNI-AYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEE-hhh-cCHHHHHhhE-EEEcCCchhccchHHHHhhCHHHH
Confidence 346799999999999999999986543 234555553211 000 0000100000 0000000000 00 011
Q ss_pred cHHHHHHhhcCCcceEEEecCCC------hHHHHHHhcCcCCCCCCcEEEEEeCChhhhhhcCCCeEEEe
Q 001161 285 DLNFQSKKLTRKKVLIVFDDVNH------PRQIKILVGRLDLLASGSRIIITTRDRQVLANCGVDEVYQM 348 (1134)
Q Consensus 285 ~~~~l~~~L~~k~~LlVLDdv~~------~~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~~~~~~~~l 348 (1134)
..-.+...+..++-+++||+-.. ...+..+...+ ..+..||++|.+...+.. .++++.+
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~---~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRAL---AKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHh---cCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11224455667888999998632 22233333333 235678888988877653 4566555
No 348
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.94 E-value=0.082 Score=57.63 Aligned_cols=116 Identities=17% Similarity=0.139 Sum_probs=63.8
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCC------CCCCccccHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGN------VKNFPNIDLN 287 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~------~~~~~~~~~~ 287 (1134)
+.+.++|+|..|.|||||.+.++..+... .+.+++... .........++...+ ..+ .+.. ....... ..
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~-~v~~~d~~~ei~~~~-~~~-~q~~~~~r~~v~~~~~k-~~ 184 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK-KVGIVDERSEIAGCV-NGV-PQHDVGIRTDVLDGCPK-AE 184 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE-EeecchhHHHHHHHh-ccc-ccccccccccccccchH-HH
Confidence 35679999999999999999999766533 333333210 000000011221111 000 1111 0011111 22
Q ss_pred HHHHhhc-CCcceEEEecCCChHHHHHHhcCcCCCCCCcEEEEEeCChhhh
Q 001161 288 FQSKKLT-RKKVLIVFDDVNHPRQIKILVGRLDLLASGSRIIITTRDRQVL 337 (1134)
Q Consensus 288 ~l~~~L~-~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIiiTTR~~~~~ 337 (1134)
.+...+. ..+=++++|.+...+.+..+.... ..|..+|+||.+..+.
T Consensus 185 ~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHHH
Confidence 2333333 578899999998888777776654 3578899999876653
No 349
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.87 E-value=0.045 Score=55.90 Aligned_cols=35 Identities=29% Similarity=0.195 Sum_probs=26.8
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
..+|+|.|++|.||||+|++++..+...-....++
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i 38 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL 38 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 45899999999999999999998775432223444
No 350
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.85 E-value=0.023 Score=47.86 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=21.0
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
+|+|.|.+|.||||+|+++.+++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 351
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.82 E-value=0.2 Score=66.46 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=22.7
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
..+-|.++|++|.|||.||+++|...
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 34568999999999999999999764
No 352
>PRK03839 putative kinase; Provisional
Probab=94.80 E-value=0.021 Score=58.69 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=21.7
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
.|.|.|++|.||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998864
No 353
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.79 E-value=0.094 Score=65.99 Aligned_cols=50 Identities=24% Similarity=0.226 Sum_probs=39.2
Q ss_pred ccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 190 ENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
....++|....++.+.+.+..-...-.-|.|+|..|.|||++|+++++.-
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 34579999999998877665433334568999999999999999998753
No 354
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.77 E-value=0.061 Score=57.21 Aligned_cols=125 Identities=19% Similarity=0.179 Sum_probs=67.6
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeec--hhHhhcCCHHHHHHHHHHHHhcCCCC-CCCc------c
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNV--REAEETGRLGDLRQQLLSTLLNDGNV-KNFP------N 283 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~~l~~~ll~~l~~~~~~-~~~~------~ 283 (1134)
.+..++||+|..|.||||+|+.+..-..... +.+++... .... .....+...+++..+...... ...+ .
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 3456799999999999999999987554333 33333211 0111 112223344455544322111 0111 1
Q ss_pred ccHHHHHHhhcCCcceEEEecCCCh------HHHHHHhcCcCCCCCCcEEEEEeCChhhhhhc
Q 001161 284 IDLNFQSKKLTRKKVLIVFDDVNHP------RQIKILVGRLDLLASGSRIIITTRDRQVLANC 340 (1134)
Q Consensus 284 ~~~~~l~~~L~~k~~LlVLDdv~~~------~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~ 340 (1134)
...-.+.+.|.-++-+||.|...+. .|.-.+...+.. ..|-..+..|.|-.+....
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 1223456677889999999975332 233333333221 3455677777777776654
No 355
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.77 E-value=0.0026 Score=66.29 Aligned_cols=38 Identities=21% Similarity=0.112 Sum_probs=20.8
Q ss_pred CeeEEEeecCCCCCCCCCCCCcccceEeeCCCCCcccc
Q 001161 587 TEVRYLHWHGYPLKSLPSNIHPEKLVLLEMPYSNIEQL 624 (1134)
Q Consensus 587 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l 624 (1134)
+.|++|.|+-|.+++|.+.-...+|++|+|..|.|..+
T Consensus 41 p~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sl 78 (388)
T KOG2123|consen 41 PLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESL 78 (388)
T ss_pred ccceeEEeeccccccchhHHHHHHHHHHHHHhcccccH
Confidence 45555555555555555544455555555555555544
No 356
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.77 E-value=0.14 Score=52.51 Aligned_cols=126 Identities=15% Similarity=0.182 Sum_probs=63.2
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCC-----------CCC-CC
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDG-----------NVK-NF 281 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~-----------~~~-~~ 281 (1134)
.-.+++|.|..|.|||||++.++-... ...+.+++... ..... .....+.+ .-+.... ... ..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~~~--~~~~~~~i-~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK-PQQGEITLDGV-PVSDL--EKALSSLI-SVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC-CCCCEEEECCE-EHHHH--HHHHHhhE-EEEccCCeeecccHHHhhcccCCH
Confidence 345799999999999999999986432 22344554321 00000 00000000 0000000 000 00
Q ss_pred ccccHHHHHHhhcCCcceEEEecCCCh------HHHHHHhcCcCCCCCCcEEEEEeCChhhhhhcCCCeEEEec
Q 001161 282 PNIDLNFQSKKLTRKKVLIVFDDVNHP------RQIKILVGRLDLLASGSRIIITTRDRQVLANCGVDEVYQMK 349 (1134)
Q Consensus 282 ~~~~~~~l~~~L~~k~~LlVLDdv~~~------~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~~~~~~~~l~ 349 (1134)
-+...-.+...+..++=++++|+.... +.+..+...+ ..+..||++|.+...... .++++.+.
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~---~~~~tii~~sh~~~~~~~--~d~~~~l~ 170 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV---LKDKTLIWITHHLTGIEH--MDKILFLE 170 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH---cCCCEEEEEecCHHHHHh--CCEEEEEE
Confidence 111122344556677889999986422 2222222222 236788899988877653 45665553
No 357
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.75 E-value=0.2 Score=50.15 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=29.9
Q ss_pred HHHHHHhcccEEEEecCCcccchhhHHHHHHHHHhhhccCcEEEeEEeeec
Q 001161 68 LLDAIEASSISIIVFSERYASSRWCLDELLKILECKKEYAQIVIPACYRVD 118 (1134)
Q Consensus 68 ~~~~i~~s~~~i~v~S~~y~~s~wc~~El~~~~~~~~~~~~~v~pvf~~v~ 118 (1134)
+.++++++.+.+.|+......+.. -.++.+.+... ..+..++.|+-++|
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~-~~~~p~ilVlNKiD 50 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE-KPHKHLIFVLNKCD 50 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc-cCCCCEEEEEEchh
Confidence 457899999999888765432221 23455555432 22345777887777
No 358
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.75 E-value=0.046 Score=63.37 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.5
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
..|.++|++|+|||++|+.++..+..
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDV 134 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 55899999999999999999976643
No 359
>PTZ00301 uridine kinase; Provisional
Probab=94.75 E-value=0.027 Score=58.96 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=24.9
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhccC
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRHF 243 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1134)
..+|||.|.+|.||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999998775443
No 360
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.75 E-value=0.15 Score=51.89 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.3
Q ss_pred CeeEEEEEecCCChHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIF 236 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~ 236 (1134)
.-.+++|+|+.|.|||||.+.+.
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34679999999999999999885
No 361
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.75 E-value=0.093 Score=57.24 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=21.1
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
+.|.|+|.||.||||+|+++...+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~ 28 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK 28 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc
Confidence 468999999999999999999877653
No 362
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.72 E-value=0.27 Score=49.71 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=20.6
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
++.|.|.+|.||||+|..++.+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 58999999999999999988764
No 363
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=94.71 E-value=0.27 Score=63.03 Aligned_cols=226 Identities=18% Similarity=0.182 Sum_probs=108.7
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhccC----Cceeee--eechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHH
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKISRHF----AGSFFA--RNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQS 290 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~~f----~~~~~~--~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~ 290 (1134)
-+.|+|.+|.||||....++-....+. +...|+ ...........-..+...+...+....... .......
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~----~~~~~~~ 299 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAK----QLIEAHQ 299 (824)
T ss_pred heeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCcc----hhhHHHH
Confidence 689999999999999998886543322 222332 111111111000023333333332222211 1122225
Q ss_pred HhhcCCcceEEEecCCChHH------HHHHhcCcCCCCCCcEEEEEeCChhhhhhcCCCeEEEecCCCHHhHHHHHH---
Q 001161 291 KKLTRKKVLIVFDDVNHPRQ------IKILVGRLDLLASGSRIIITTRDRQVLANCGVDEVYQMKELVHDDALRLFS--- 361 (1134)
Q Consensus 291 ~~L~~k~~LlVLDdv~~~~~------l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~--- 361 (1134)
+.++..++|+.+|.++.... ...+-...++ -+.+.+|+|+|....-........+++..+.++.-.+...
T Consensus 300 e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~-~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~ 378 (824)
T COG5635 300 ELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE-YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQW 378 (824)
T ss_pred HHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh-ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHH
Confidence 67889999999999876542 2222212222 3588999999977554333223445555555554332211
Q ss_pred -----HhhcCCCCCC-ccHH-HH---HHHHHHHhcCChHHHHHHHHHhc------CCCHHHHHHHHHHHHcCCCCchhhh
Q 001161 362 -----RHAFEGDHPH-ESHT-EL---ACKIIKYARGVPLALEVLGRYLY------GKRREVWENAISKWETAPPKGIQDA 425 (1134)
Q Consensus 362 -----~~af~~~~~~-~~~~-~~---~~~i~~~~~GlPLal~~~g~~L~------~~~~~~w~~~l~~l~~~~~~~i~~~ 425 (1134)
...++..... ..+. .+ ..+-++.....|++|.+.+..-. ....+-++.+++.+-...+..=...
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~~~d~~~~~~ 458 (824)
T COG5635 379 LDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLGREDETRGIK 458 (824)
T ss_pred HHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHhccchhhhhc
Confidence 1112111111 0111 11 12233444778998888773322 2345667777666544332221222
Q ss_pred hhhhhcCC-CHHHHH-HHHhhhcc
Q 001161 426 LKISYDGL-DDKEQN-VFLDIACF 447 (1134)
Q Consensus 426 l~~sy~~L-~~~~k~-~fl~~a~f 447 (1134)
....|+.+ .+...+ .+..+|.+
T Consensus 459 ~~~~~~~~~~~~~~~~l~~~la~~ 482 (824)
T COG5635 459 WSKTYAKLTTDQQDKWLLQLLAAL 482 (824)
T ss_pred chhhhcccchHHHHHHHHHHHHHH
Confidence 33445555 233333 45444443
No 364
>PRK04040 adenylate kinase; Provisional
Probab=94.67 E-value=0.03 Score=57.67 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHh
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
.+|+|+|++|.||||+++.+.+++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998874
No 365
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.66 E-value=0.054 Score=53.86 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=23.8
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccC
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHF 243 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1134)
+-|.++||.|.||||+.++++..+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3488999999999999999998765555
No 366
>PRK00625 shikimate kinase; Provisional
Probab=94.66 E-value=0.023 Score=57.52 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.4
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
.|.++||+|+||||+|+.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988764
No 367
>PRK08233 hypothetical protein; Provisional
Probab=94.66 E-value=0.025 Score=58.22 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.0
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
..+|+|.|.+|.||||+|+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999987653
No 368
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.66 E-value=0.022 Score=52.81 Aligned_cols=26 Identities=35% Similarity=0.632 Sum_probs=22.0
Q ss_pred EEEEecCCChHHHHHHHHHHHHhccC
Q 001161 218 LGIWGIGGIGKTTIAGAIFSKISRHF 243 (1134)
Q Consensus 218 v~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1134)
|.|+|.+|+|||++|+.++..+.+.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 56899999999999999998766543
No 369
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.65 E-value=0.11 Score=55.44 Aligned_cols=55 Identities=15% Similarity=0.313 Sum_probs=34.1
Q ss_pred cHHHHHHhhcCCcceEEEecCC------ChHHHHHHhcCcCCCCCCcEEEEEeCChhhhhhc
Q 001161 285 DLNFQSKKLTRKKVLIVFDDVN------HPRQIKILVGRLDLLASGSRIIITTRDRQVLANC 340 (1134)
Q Consensus 285 ~~~~l~~~L~~k~~LlVLDdv~------~~~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~ 340 (1134)
....+...|.++.=++.||.-- +..++-.+...+. ...|..||+++.|-..+..+
T Consensus 145 Qrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~-~~~~~tvv~vlHDlN~A~ry 205 (258)
T COG1120 145 QRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN-REKGLTVVMVLHDLNLAARY 205 (258)
T ss_pred HHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH-HhcCCEEEEEecCHHHHHHh
Confidence 3455677788888899999642 2222222222221 13577799999999877665
No 370
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.62 E-value=0.28 Score=52.97 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=20.6
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
+..|+|+||+|||+||..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999987654
No 371
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.61 E-value=0.13 Score=57.58 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=34.9
Q ss_pred HHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHh------ccCCceeeee
Q 001161 201 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKIS------RHFAGSFFAR 250 (1134)
Q Consensus 201 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~------~~f~~~~~~~ 250 (1134)
...|.++|..+-...+++-|+|.+|+|||+|+..++-... ..=..++|++
T Consensus 82 ~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId 137 (313)
T TIGR02238 82 SQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID 137 (313)
T ss_pred CHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence 4566677765445668899999999999999988764321 1123567774
No 372
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.57 E-value=0.037 Score=57.21 Aligned_cols=30 Identities=33% Similarity=0.455 Sum_probs=26.6
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
..+.+|||.|.+|.||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 456899999999999999999999888755
No 373
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.56 E-value=0.11 Score=57.50 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=24.7
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
..++++|+|++|+||||++..++..+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45689999999999999999998876543
No 374
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.54 E-value=0.099 Score=62.62 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=41.5
Q ss_pred chhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 198 RLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 198 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
..-+.++.+.|..+-..-.++.|.|.+|+||||||.+++.....+-+.++|+
T Consensus 246 ~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~ 297 (484)
T TIGR02655 246 SSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILF 297 (484)
T ss_pred CCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3445677778876656778999999999999999999998776666667776
No 375
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.53 E-value=1.7 Score=48.11 Aligned_cols=166 Identities=9% Similarity=0.074 Sum_probs=91.6
Q ss_pred HHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc---------CC-ceeeeeechhHhhcCCHHHHHHHHHHH
Q 001161 202 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH---------FA-GSFFARNVREAEETGRLGDLRQQLLST 271 (1134)
Q Consensus 202 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------f~-~~~~~~~~~~~~~~~~~~~l~~~ll~~ 271 (1134)
+.+...+..+ .-.++..++|..|+||+++|+++++.+-.. .+ ...++. . ........++. ++...
T Consensus 6 ~~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~--~g~~i~vd~Ir-~l~~~ 80 (299)
T PRK07132 6 KFLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-I--FDKDLSKSEFL-SAINK 80 (299)
T ss_pred HHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-c--CCCcCCHHHHH-HHHHH
Confidence 3444444322 224667799999999999999999876211 11 111111 0 00111222222 22222
Q ss_pred HhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH--HHHHHhcCcCCCCCCcEEEEEe-CChhhhhh-cCCCeEEE
Q 001161 272 LLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR--QIKILVGRLDLLASGSRIIITT-RDRQVLAN-CGVDEVYQ 347 (1134)
Q Consensus 272 l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIiiTT-R~~~~~~~-~~~~~~~~ 347 (1134)
+.... .-.+++=++|+|+++... ....|...+...++.+.+|++| ....+++. .....+++
T Consensus 81 ~~~~~---------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~ 145 (299)
T PRK07132 81 LYFSS---------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFN 145 (299)
T ss_pred hccCC---------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEE
Confidence 11100 001355688889987654 3566776666667777777655 44455543 33457899
Q ss_pred ecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHH
Q 001161 348 MKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVL 395 (1134)
Q Consensus 348 l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 395 (1134)
+.+++.++..+.+.... .. .+.+..++..++|.--|+..+
T Consensus 146 f~~l~~~~l~~~l~~~~-----~~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 146 VKEPDQQKILAKLLSKN-----KE---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred CCCCCHHHHHHHHHHcC-----CC---hhHHHHHHHHcCCHHHHHHHH
Confidence 99999999988776531 11 244556666677633444443
No 376
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.51 E-value=0.014 Score=36.60 Aligned_cols=19 Identities=42% Similarity=0.644 Sum_probs=10.2
Q ss_pred cceeecCCCCccccccchh
Q 001161 847 VTELHLEGNNFERIPESII 865 (1134)
Q Consensus 847 L~~L~Ls~n~l~~lp~~l~ 865 (1134)
|++|+|++|+|+.+|.+|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 377
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.51 E-value=0.11 Score=53.03 Aligned_cols=127 Identities=16% Similarity=0.195 Sum_probs=63.5
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCC----------CC-c
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVK----------NF-P 282 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~----------~~-~ 282 (1134)
.-.+++|+|..|.|||||++.++-... ...+.+++.... ... .. ....+.+ .-+..+.... -+ -
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~-~~~-~~-~~~~~~i-~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGKD-IKK-EP-EEVKRRI-GYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-ccc-ch-HhhhccE-EEEecCCccccCCcHHHHhhcCHH
Confidence 346799999999999999999876432 234555543210 000 00 0000000 0000000000 00 0
Q ss_pred cccHHHHHHhhcCCcceEEEecCCCh------HHHHHHhcCcCCCCCCcEEEEEeCChhhhhhcCCCeEEEe
Q 001161 283 NIDLNFQSKKLTRKKVLIVFDDVNHP------RQIKILVGRLDLLASGSRIIITTRDRQVLANCGVDEVYQM 348 (1134)
Q Consensus 283 ~~~~~~l~~~L~~k~~LlVLDdv~~~------~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~~~~~~~~l 348 (1134)
+...-.+...+..++=++++|+.... ..+..+...+. ..|..||++|.+...+... .+.++.+
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~~~-~d~i~~l 168 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAERL-CDRVAIL 168 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHHh-CCEEEEE
Confidence 11122344556778889999986322 22222322222 2367799999888766543 3455554
No 378
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.41 Score=57.52 Aligned_cols=144 Identities=18% Similarity=0.205 Sum_probs=78.1
Q ss_pred CCccccchhHHHHHHhhcc----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCH
Q 001161 192 EDLVGVRLPMKEIESLLRT----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRL 261 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 261 (1134)
+++=|.+....+|.+-+.. +-.+..-|.++|++|.|||-||++|+.+.+-.| +.. .+.
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F-----lSV-------KGP 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF-----LSV-------KGP 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE-----Eee-------cCH
Confidence 4566777777777765543 112344588999999999999999998765443 211 111
Q ss_pred HHHHHHHHHHHhcCCCCCCCccccHHHHHHhh-cCCcceEEEecCCChH---------------HHHHHhcCcCCC----
Q 001161 262 GDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL-TRKKVLIVFDDVNHPR---------------QIKILVGRLDLL---- 321 (1134)
Q Consensus 262 ~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~~---------------~l~~l~~~~~~~---- 321 (1134)
+ ++..-. ++ + ++-.+.+.++. ..++++|.+|.+++.. ..-.++..++..
T Consensus 740 E-LLNMYV----Gq-----S-E~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~ 808 (953)
T KOG0736|consen 740 E-LLNMYV----GQ-----S-EENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSS 808 (953)
T ss_pred H-HHHHHh----cc-----h-HHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCC
Confidence 1 111111 11 1 11133333333 4589999999987542 122233333322
Q ss_pred CCCcEEEEEeCChhhhhh-----cCCCeEEEecCCCHHhHHH
Q 001161 322 ASGSRIIITTRDRQVLAN-----CGVDEVYQMKELVHDDALR 358 (1134)
Q Consensus 322 ~~gsrIiiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~ 358 (1134)
..+.-||=.|..++++.. -.-+..+.|++=+.++...
T Consensus 809 s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~ 850 (953)
T KOG0736|consen 809 SQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKL 850 (953)
T ss_pred CCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHH
Confidence 233445555655555332 2345666777766665543
No 379
>PRK06762 hypothetical protein; Provisional
Probab=94.45 E-value=0.033 Score=56.38 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=22.1
Q ss_pred eEEEEEecCCChHHHHHHHHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
++|.|+|++|.||||+|+++++++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999876
No 380
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.44 E-value=0.054 Score=68.05 Aligned_cols=111 Identities=20% Similarity=0.293 Sum_probs=58.1
Q ss_pred CCcceEEEecCCC---hHHHHH----HhcCcCCCCCCcEEEEEeCChhhhhhcCCC-eE--EEecCCCHHhHHHHHHHhh
Q 001161 295 RKKVLIVFDDVNH---PRQIKI----LVGRLDLLASGSRIIITTRDRQVLANCGVD-EV--YQMKELVHDDALRLFSRHA 364 (1134)
Q Consensus 295 ~k~~LlVLDdv~~---~~~l~~----l~~~~~~~~~gsrIiiTTR~~~~~~~~~~~-~~--~~l~~L~~~ea~~Lf~~~a 364 (1134)
..+-|+++|..-. ...... +...+. ..|+.+|+||....+....... .+ +.+. ++. +... |..+.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~-p~Ykl 475 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS-PTYKL 475 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc-eEEEE
Confidence 4789999999743 222222 222222 3578999999998764332111 11 1121 111 1111 11111
Q ss_pred cCCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001161 365 FEGDHPHESHTELACKIIKYARGVPLALEVLGRYLYGKRREVWENAISKWE 415 (1134)
Q Consensus 365 f~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~l~ 415 (1134)
..+ .+. ...|-+|++++ |+|-.+..-|..+.+....+.+..+.++.
T Consensus 476 ~~G-~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 476 LKG-IPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred CCC-CCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 111 111 22355666655 88888888888776665556666666554
No 381
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=94.44 E-value=0.54 Score=52.57 Aligned_cols=56 Identities=14% Similarity=0.059 Sum_probs=34.7
Q ss_pred eEEEecCCCHHhHHHHHHHhhcCCCCC-CccHHHHHHHHHHHhcCChHHHHHHHHHh
Q 001161 344 EVYQMKELVHDDALRLFSRHAFEGDHP-HESHTELACKIIKYARGVPLALEVLGRYL 399 (1134)
Q Consensus 344 ~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~GlPLal~~~g~~L 399 (1134)
.+++|+..+.+|+.++...+.-..-.. ...-++.-+++.-..+|+|--++-++.++
T Consensus 404 ~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 404 VPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHHHHhc
Confidence 367899999999998877655211100 00113445667777799996666666554
No 382
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.43 E-value=0.1 Score=55.24 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=28.5
Q ss_pred HHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 203 EIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 203 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
++.+.+.....+..+|||+|+||.|||||..++...++.+
T Consensus 17 ~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 17 ELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 3333333334567899999999999999999998877654
No 383
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.42 E-value=0.039 Score=57.02 Aligned_cols=93 Identities=19% Similarity=0.190 Sum_probs=51.8
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhc-CCCC-CCCccccHHHHHHh
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLN-DGNV-KNFPNIDLNFQSKK 292 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~-~~~~-~~~~~~~~~~l~~~ 292 (1134)
...++|.|..|.||||+++++...+... ...+.+.+..+...... ... ++.. .... ..........++..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 96 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPHP------NWV-RLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCCC------CEE-EEEEecCCCCCCCccCHHHHHHHH
Confidence 4679999999999999999998766432 23333322111110000 000 0000 0000 01112234566677
Q ss_pred hcCCcceEEEecCCChHHHHHHh
Q 001161 293 LTRKKVLIVFDDVNHPRQIKILV 315 (1134)
Q Consensus 293 L~~k~~LlVLDdv~~~~~l~~l~ 315 (1134)
++..+=.++++.+.+.+.++.+.
T Consensus 97 lR~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 97 LRMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred hccCCCEEEEEccCcHHHHHHHH
Confidence 78888899999998887665443
No 384
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.41 E-value=0.13 Score=51.25 Aligned_cols=55 Identities=9% Similarity=0.247 Sum_probs=37.6
Q ss_pred cHHHHHHhhcCCcceEEEec----CCChHHHH--HHhcCcCCCCCCcEEEEEeCChhhhhhcC
Q 001161 285 DLNFQSKKLTRKKVLIVFDD----VNHPRQIK--ILVGRLDLLASGSRIIITTRDRQVLANCG 341 (1134)
Q Consensus 285 ~~~~l~~~L~~k~~LlVLDd----v~~~~~l~--~l~~~~~~~~~gsrIiiTTR~~~~~~~~~ 341 (1134)
..-.|.+.+-+++-+++-|. ++..-.|+ .+...++ ..|..||++|.+.++...+.
T Consensus 144 QRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 144 QRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhcc
Confidence 34456667778899999995 44443333 3333333 57899999999999887763
No 385
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.39 E-value=0.15 Score=52.00 Aligned_cols=128 Identities=20% Similarity=0.239 Sum_probs=64.1
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCC--------CC-ccc
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVK--------NF-PNI 284 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~--------~~-~~~ 284 (1134)
.-.+++|.|..|.|||||++.++-... ...+.+++... ... ........+.+ .-+..+.... -+ -+.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~-~~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGA-DIS-QWDPNELGDHV-GYLPQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCE-Ecc-cCCHHHHHhhe-EEECCCCccccCcHHHHCcCHHHH
Confidence 345799999999999999999986542 23455554321 000 00111111110 0000000000 00 011
Q ss_pred cHHHHHHhhcCCcceEEEecCCC---h---HHHHHHhcCcCCCCCCcEEEEEeCChhhhhhcCCCeEEEec
Q 001161 285 DLNFQSKKLTRKKVLIVFDDVNH---P---RQIKILVGRLDLLASGSRIIITTRDRQVLANCGVDEVYQMK 349 (1134)
Q Consensus 285 ~~~~l~~~L~~k~~LlVLDdv~~---~---~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~~~~~~~~l~ 349 (1134)
..-.+...+..++=++++|+... . ..+..+...+. ..|..||++|.+...+. . .++++.+.
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~-~-~d~v~~l~ 169 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA-S-ADRILVLE 169 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CCEEEEEE
Confidence 12234445566777999998632 1 22333332222 24677888888887664 3 56666553
No 386
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.38 E-value=0.14 Score=54.47 Aligned_cols=52 Identities=19% Similarity=0.381 Sum_probs=35.8
Q ss_pred HHHHHhhcCCcceEEEec----CCC--hHHHHHHhcCcCCCCCCcEEEEEeCChhhhhhc
Q 001161 287 NFQSKKLTRKKVLIVFDD----VNH--PRQIKILVGRLDLLASGSRIIITTRDRQVLANC 340 (1134)
Q Consensus 287 ~~l~~~L~~k~~LlVLDd----v~~--~~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~ 340 (1134)
..+.+.|..++=|++||. ||. ...+-.+...+. ..|..||++|.|-......
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMAY 205 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHhh
Confidence 456677889999999996 333 333455555544 3388999999998766554
No 387
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.36 E-value=0.037 Score=58.39 Aligned_cols=27 Identities=37% Similarity=0.593 Sum_probs=24.1
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
.+..+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999876
No 388
>PRK08506 replicative DNA helicase; Provisional
Probab=94.34 E-value=0.3 Score=58.12 Aligned_cols=73 Identities=21% Similarity=0.174 Sum_probs=49.7
Q ss_pred CccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHH
Q 001161 193 DLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTL 272 (1134)
Q Consensus 193 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 272 (1134)
...|...-...|.+++ .+-....++.|-|.+|+|||++|..++.....+-..++|+ +-.....++..++++..
T Consensus 171 ~~~Gi~TG~~~LD~~~-~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~f------SlEMs~~ql~~Rlla~~ 243 (472)
T PRK08506 171 DIIGLDTGFVELNKMT-KGFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFF------SLEMPAEQLMLRMLSAK 243 (472)
T ss_pred CCCcccCChHHHHhhc-CCCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEE------eCcCCHHHHHHHHHHHh
Confidence 3556666777777765 3334556899999999999999999987664433344454 33456667777776654
No 389
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.34 E-value=0.043 Score=57.91 Aligned_cols=23 Identities=17% Similarity=0.060 Sum_probs=20.9
Q ss_pred eeEEEEEecCCChHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
.+++.|+|+-|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 390
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.31 E-value=0.053 Score=58.09 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=27.0
Q ss_pred CCCeeEEEEEecCCChHHHHHHHHHHHHhccC
Q 001161 212 STNVYKLGIWGIGGIGKTTIAGAIFSKISRHF 243 (1134)
Q Consensus 212 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1134)
.....+|+|.|+.|.|||||++.+...+....
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 35678999999999999999999998776543
No 391
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=94.29 E-value=0.19 Score=59.43 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.6
Q ss_pred eEEEEEecCCChHHHHHHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
..|+|+|.+|+|||||..++..
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~ 237 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLG 237 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999998875
No 392
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.28 E-value=0.17 Score=58.50 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=32.2
Q ss_pred hhHHHHHHhhc-----cCCCCeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 199 LPMKEIESLLR-----TGSTNVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 199 ~~~~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
+-++++..||. ...-+.+++.|+|++|.||||..+.++..+
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 44566677776 344567899999999999999999988764
No 393
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.24 E-value=0.036 Score=56.54 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.8
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
...|.|+|++|.||||+|++++.++
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999886
No 394
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.24 E-value=0.047 Score=54.66 Aligned_cols=124 Identities=20% Similarity=0.255 Sum_probs=64.2
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhc
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLT 294 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~ 294 (1134)
-.+++|+|..|.|||||++.++..+. ...+.+++... ... ..........+. ...+ ...-+...-.+...+.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~-~~~-~~~~~~~~~~i~--~~~q---lS~G~~~r~~l~~~l~ 96 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGK-DIA-KLPLEELRRRIG--YVPQ---LSGGQRQRVALARALL 96 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCE-Ecc-cCCHHHHHhceE--EEee---CCHHHHHHHHHHHHHh
Confidence 36799999999999999999986543 34555665322 000 000111111000 0000 0001111223445556
Q ss_pred CCcceEEEecCCC---hHH---HHHHhcCcCCCCCCcEEEEEeCChhhhhhcCCCeEEEec
Q 001161 295 RKKVLIVFDDVNH---PRQ---IKILVGRLDLLASGSRIIITTRDRQVLANCGVDEVYQMK 349 (1134)
Q Consensus 295 ~k~~LlVLDdv~~---~~~---l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~~~~~~~~l~ 349 (1134)
..+-++++|+... ... +..+...+. ..+..++++|.+...+... .++++.+.
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~~-~d~i~~l~ 154 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAELA-ADRVIVLK 154 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEEe
Confidence 6788999998742 222 222222221 2256788888888776553 35555553
No 395
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.23 E-value=0.11 Score=53.17 Aligned_cols=35 Identities=23% Similarity=0.233 Sum_probs=26.0
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
.-.+++|.|..|.|||||++.++-.. ....+.+.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~ 59 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE-EPDSGSILI 59 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEE
Confidence 34579999999999999999988543 233455554
No 396
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.19 E-value=0.31 Score=55.48 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=25.2
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccC
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHF 243 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1134)
+..+++++|+.|+||||++.+++.+...++
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~ 165 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRF 165 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 356899999999999999999998765444
No 397
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.18 E-value=0.13 Score=49.24 Aligned_cols=97 Identities=10% Similarity=0.178 Sum_probs=45.5
Q ss_pred cceeEecCcCccccCcc-ccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccC
Q 001161 705 IETMHLDGTALEELPSS-IECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVG 783 (1134)
Q Consensus 705 L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~ 783 (1134)
|+.+.+.. .+..++.. |.++++|+.+.+.++ +...-...|.++++|+.+.+.+ .....-...|..+++|+.+.+..
T Consensus 14 l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 14 LESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp --EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred CCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence 44444432 34455543 777777888887764 3333344577777788888865 33222334566677777777765
Q ss_pred CcCcccCcc-ccCCCCCCEEEecC
Q 001161 784 TAIRELPPS-IVRLKSVRAIYFGR 806 (1134)
Q Consensus 784 n~i~~lp~~-~~~l~~L~~L~l~~ 806 (1134)
+ +..++.. +.++ +|+.+.+..
T Consensus 91 ~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 91 N-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T--BEEHTTTTTT--T--EEE-TT
T ss_pred c-ccEEchhhhcCC-CceEEEECC
Confidence 4 5544433 3333 666666553
No 398
>PRK15115 response regulator GlrR; Provisional
Probab=94.18 E-value=3.9 Score=48.75 Aligned_cols=47 Identities=26% Similarity=0.211 Sum_probs=34.1
Q ss_pred CCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHH
Q 001161 192 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
..++|....+.++.+....-......|.|.|.+|.|||++|+.+.+.
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~ 180 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNA 180 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHh
Confidence 35788887777666554332233345789999999999999988764
No 399
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.17 E-value=0.12 Score=55.60 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=37.6
Q ss_pred HHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeee
Q 001161 201 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFAR 250 (1134)
Q Consensus 201 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1134)
+..|.++|..+=....++.|.|.+|.|||++|.++......+-+.++|+.
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 34566666655566789999999999999999988765445556777773
No 400
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.16 E-value=0.22 Score=52.22 Aligned_cols=61 Identities=21% Similarity=0.340 Sum_probs=39.3
Q ss_pred HHHHHHhhcCCcceEEEecC------CChHHHHHHhcCcCCCCCCcEEEEEeCChhhhhhcCCCeEEEec
Q 001161 286 LNFQSKKLTRKKVLIVFDDV------NHPRQIKILVGRLDLLASGSRIIITTRDRQVLANCGVDEVYQMK 349 (1134)
Q Consensus 286 ~~~l~~~L~~k~~LlVLDdv------~~~~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~~~~~~~~l~ 349 (1134)
.-.+.+.|...+-+|+-|+- .+.+.+-.++..+. ...|..||+.|.+..++..+ ++++.+.
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~~--dr~i~l~ 216 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKYA--DRVIELK 216 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHhC--CEEEEEe
Confidence 34566778888999999963 22233333333321 13477899999999998864 5566554
No 401
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.16 E-value=0.2 Score=53.29 Aligned_cols=91 Identities=20% Similarity=0.261 Sum_probs=47.1
Q ss_pred EEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhh-cCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcC-
Q 001161 218 LGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEE-TGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTR- 295 (1134)
Q Consensus 218 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~- 295 (1134)
|.|.|++|+||||+|+.++.++. +....-=..+++... ...+....++++.+ .. ....+.....+.+.+..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g--~~~is~gdllr~~~~~~t~lg~~i~~~~~~----G~-lvpd~iv~~lv~~~l~~~ 81 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN--LKHINMGNILREEIKAKTTIGKEIQKVVTS----GN-LVPDNLVIAIVKDEIAKV 81 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CcEEECChHHHHHhhcCChHHHHHHHHHHc----CC-cCCHHHHHHHHHHHHHhh
Confidence 88999999999999999988652 221111111111111 11222222332221 11 12222334455555533
Q ss_pred ---CcceEEEecC-CChHHHHHHh
Q 001161 296 ---KKVLIVFDDV-NHPRQIKILV 315 (1134)
Q Consensus 296 ---k~~LlVLDdv-~~~~~l~~l~ 315 (1134)
...-+|||.. .+..|.+.+.
T Consensus 82 ~~~~~~g~iLDGfPRt~~Qa~~l~ 105 (229)
T PTZ00088 82 TDDCFKGFILDGFPRNLKQCKELG 105 (229)
T ss_pred ccccCceEEEecCCCCHHHHHHHH
Confidence 3456899998 5666666654
No 402
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.15 E-value=0.16 Score=59.80 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=32.3
Q ss_pred ccchhHHHHHHhhccCC----CCeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 196 GVRLPMKEIESLLRTGS----TNVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 196 Gr~~~~~~l~~~L~~~~----~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
++...+..|.+.+.... ....+|+|+|.+|+||||++..++..+..+
T Consensus 327 ~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 327 GRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred HHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 44444555555443211 345789999999999999999998876544
No 403
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.14 E-value=0.11 Score=56.84 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=38.4
Q ss_pred HHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeee
Q 001161 204 IESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFAR 250 (1134)
Q Consensus 204 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1134)
+.++|..+-+..+++.|+|.+|.|||++|.++..+.......++|+.
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 34445444467789999999999999999999998888888888883
No 404
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.12 E-value=1.9 Score=48.22 Aligned_cols=48 Identities=19% Similarity=0.142 Sum_probs=33.6
Q ss_pred EEEecCCCHHhHHHHHHHhhcCCCCCC-ccHHHHHHHHHHHhcCChHHH
Q 001161 345 VYQMKELVHDDALRLFSRHAFEGDHPH-ESHTELACKIIKYARGVPLAL 392 (1134)
Q Consensus 345 ~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~GlPLal 392 (1134)
.++|++++.+|+..++..++-.+--.. ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 689999999999999998775443322 223445556666669999544
No 405
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.12 E-value=0.044 Score=57.71 Aligned_cols=28 Identities=36% Similarity=0.529 Sum_probs=24.4
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
+...+|+|+|++|.||||||+.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999999987654
No 406
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.10 E-value=0.05 Score=59.10 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=29.2
Q ss_pred HHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 201 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 201 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
.+.|.++|..+-....+.-|+|.+|+|||+||..++-..
T Consensus 24 ~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~ 62 (256)
T PF08423_consen 24 CKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNV 62 (256)
T ss_dssp SHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHh
Confidence 446777775433445688999999999999999887543
No 407
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.09 E-value=0.041 Score=56.91 Aligned_cols=26 Identities=31% Similarity=0.211 Sum_probs=23.2
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
++.+|+|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
No 408
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.07 E-value=0.089 Score=57.13 Aligned_cols=48 Identities=21% Similarity=0.224 Sum_probs=37.7
Q ss_pred HHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeee
Q 001161 203 EIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFAR 250 (1134)
Q Consensus 203 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1134)
.+.++|..+-..-+++-|+|+.|.||||+|.+++-.....-..++|++
T Consensus 48 ~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 48 ALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred hHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 455566544466788999999999999999998877666666888985
No 409
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.04 E-value=0.062 Score=51.40 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=23.0
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
...+|.+.|.-|.||||+++.++..+
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 44579999999999999999999865
No 410
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=94.03 E-value=0.12 Score=48.82 Aligned_cols=60 Identities=20% Similarity=0.305 Sum_probs=53.6
Q ss_pred cEEEcccccccccchHHHHHHHHhhCCCceEecC-CCCCCCcchHHHHHHHHhcccEEEEecCC
Q 001161 23 DVFLSFRGEDTRENFTSHLYSALSRESIETFIDD-DLRRGDEISQSLLDAIEASSISIIVFSER 85 (1134)
Q Consensus 23 dvFis~~~~D~r~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~ 85 (1134)
.|||-|. +| ..++..+...|+..|+.+.+-. ....|..+.+.+.+++.++..+|++++|+
T Consensus 1 kVFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 1 KVFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred CEEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 3899995 88 7889999999998899887666 67999999999999999999999999995
No 411
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.03 E-value=0.04 Score=60.77 Aligned_cols=126 Identities=19% Similarity=0.179 Sum_probs=69.4
Q ss_pred CCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHH
Q 001161 192 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLST 271 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 271 (1134)
+.+.-.....+++.++|...-.....|.|.|..|.||||+++++...+...-...+-+.+..+. .+... ..
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~----~l~~~-----~~ 174 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL----RLPGP-----NQ 174 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S------SCS-----SE
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce----eeccc-----ce
Confidence 3344344444566666654323457899999999999999999998766551223333221111 10000 00
Q ss_pred HhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChHHHHHHhcCcCCCCCCcEE-EEEeC
Q 001161 272 LLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPRQIKILVGRLDLLASGSRI-IITTR 332 (1134)
Q Consensus 272 l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrI-iiTTR 332 (1134)
...... .........++..|+..+=.||++.+.+.+..+.+... ..|..+ +-|..
T Consensus 175 ~~~~~~--~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~H 230 (270)
T PF00437_consen 175 IQIQTR--RDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLH 230 (270)
T ss_dssp EEEEEE--TTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE
T ss_pred EEEEee--cCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeee
Confidence 000000 12234466778888989999999999988887774433 466667 44443
No 412
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.02 E-value=0.24 Score=50.79 Aligned_cols=111 Identities=17% Similarity=0.139 Sum_probs=57.7
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhcc---C-CceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRH---F-AGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSK 291 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~---f-~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~ 291 (1134)
.-..|.|++|+|||||.+.+++-++.. | +..+-+.+.+..-.......-+-++...+ +. .+..-...-+..
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~----dV-ld~cpk~~gmmm 212 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRM----DV-LDPCPKAEGMMM 212 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhh----hh-cccchHHHHHHH
Confidence 337899999999999999999866544 3 22333322211111110000011111110 00 011111111222
Q ss_pred hh-cCCcceEEEecCCChHHHHHHhcCcCCCCCCcEEEEEeCCh
Q 001161 292 KL-TRKKVLIVFDDVNHPRQIKILVGRLDLLASGSRIIITTRDR 334 (1134)
Q Consensus 292 ~L-~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIiiTTR~~ 334 (1134)
.. ...+=++|+|.+-..++..++...+ ..|.++|.|..-.
T Consensus 213 aIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~ 253 (308)
T COG3854 213 AIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGN 253 (308)
T ss_pred HHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccc
Confidence 22 2357799999998888877766553 5688877776543
No 413
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.99 E-value=0.17 Score=54.84 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=21.7
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
.-.+++|+|..|+|||||++.++-.
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999998764
No 414
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.99 E-value=0.076 Score=59.60 Aligned_cols=109 Identities=15% Similarity=0.106 Sum_probs=58.9
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCC-CCCCccccHHHHHHh
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGN-VKNFPNIDLNFQSKK 292 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~-~~~~~~~~~~~l~~~ 292 (1134)
....++|.|..|.||||+++++...+.... ..+.+.+..+..... ...+ .+..... .....-...+.+...
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~-~~~~------~l~~~~~~~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPH-PNYV------HLFYSKGGQGLAKVTPKDLLQSC 214 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCC-CCEE------EEEecCCCCCcCccCHHHHHHHH
Confidence 346799999999999999999887654332 333343222211110 0000 0000000 001112234566677
Q ss_pred hcCCcceEEEecCCChHHHHHHhcCcCCCCCCcE-EEEEeCCh
Q 001161 293 LTRKKVLIVFDDVNHPRQIKILVGRLDLLASGSR-IIITTRDR 334 (1134)
Q Consensus 293 L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsr-IiiTTR~~ 334 (1134)
|+..+=.||+|.+...+.++.+... . .|.. ++.|+...
T Consensus 215 Lr~~pd~ii~gE~r~~e~~~~l~a~-~---~g~~~~i~T~Ha~ 253 (308)
T TIGR02788 215 LRMRPDRIILGELRGDEAFDFIRAV-N---TGHPGSITTLHAG 253 (308)
T ss_pred hcCCCCeEEEeccCCHHHHHHHHHH-h---cCCCeEEEEEeCC
Confidence 8888889999999987766544332 2 3332 45666544
No 415
>PRK13947 shikimate kinase; Provisional
Probab=93.98 E-value=0.039 Score=56.16 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.1
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhc
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
-|.|+||+|+||||+|+.+++++.-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 3889999999999999999988743
No 416
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.93 E-value=0.073 Score=59.06 Aligned_cols=60 Identities=23% Similarity=0.258 Sum_probs=42.1
Q ss_pred ccCCccccchhHHH---HHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 190 ENEDLVGVRLPMKE---IESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 190 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
....+||.....++ +.++...+.-..+.|.+.|++|.|||+||.++++.+....+.+...
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~is 84 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSIS 84 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEE
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcc
Confidence 45689999877766 3455554444568899999999999999999999998877755543
No 417
>PRK01184 hypothetical protein; Provisional
Probab=93.92 E-value=0.13 Score=52.95 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=17.8
Q ss_pred eEEEEEecCCChHHHHHHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
.+|+|+|++|.||||+|+ ++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 479999999999999987 443
No 418
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.89 E-value=0.22 Score=51.35 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=24.2
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
...+++|.|.+|.||||+|+.+...+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999987653
No 419
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.87 E-value=0.08 Score=60.29 Aligned_cols=95 Identities=15% Similarity=0.075 Sum_probs=55.1
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhccCCc---eeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRHFAG---SFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSK 291 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~---~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~ 291 (1134)
...|.|+|+.|.||||+++++...+....+. ++.+.+.- ......+.... ....+.............++.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi----E~~~~~~~~~~--~~v~Q~~v~~~~~~~~~~l~~ 207 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI----EFVYDEIETIS--ASVCQSEIPRHLNNFAAGVRN 207 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc----eEecccccccc--ceeeeeeccccccCHHHHHHH
Confidence 4689999999999999999999877554332 22222111 11111110000 000011111112234566778
Q ss_pred hhcCCcceEEEecCCChHHHHHHh
Q 001161 292 KLTRKKVLIVFDDVNHPRQIKILV 315 (1134)
Q Consensus 292 ~L~~k~~LlVLDdv~~~~~l~~l~ 315 (1134)
.|+..+-.+++..+.+.+..+...
T Consensus 208 aLR~~Pd~i~vGEiRd~et~~~al 231 (358)
T TIGR02524 208 ALRRKPHAILVGEARDAETISAAL 231 (358)
T ss_pred HhccCCCEEeeeeeCCHHHHHHHH
Confidence 899999999999999888776443
No 420
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.87 E-value=0.21 Score=49.42 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHHHH
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
++.|.|++|+||||+|+.+..+
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3789999999999999998876
No 421
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.83 E-value=0.09 Score=57.31 Aligned_cols=58 Identities=22% Similarity=0.243 Sum_probs=44.6
Q ss_pred CccCCccccchhHHH---HHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCce
Q 001161 189 SENEDLVGVRLPMKE---IESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGS 246 (1134)
Q Consensus 189 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~ 246 (1134)
...+.+||.....++ +.++...+.-.-+.|.|+|++|.|||+||..+++.+...-+.+
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 345689998776655 4566665555668899999999999999999999987665433
No 422
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.82 E-value=0.23 Score=52.05 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=22.8
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
.-.+++|+|..|.|||||++.++-...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 446899999999999999999886543
No 423
>PRK14528 adenylate kinase; Provisional
Probab=93.79 E-value=0.24 Score=51.01 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.1
Q ss_pred eEEEEEecCCChHHHHHHHHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
+.|.|.|++|.||||+|+.++..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999988765
No 424
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=0.4 Score=59.87 Aligned_cols=104 Identities=14% Similarity=0.206 Sum_probs=63.6
Q ss_pred CccccchhHHHHHHhhccCC----C--CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHH
Q 001161 193 DLVGVRLPMKEIESLLRTGS----T--NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQ 266 (1134)
Q Consensus 193 ~~vGr~~~~~~l~~~L~~~~----~--~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 266 (1134)
.++|-+..+..|.+.+.... + ..-...+.|+.|+|||.||++++..+.+..+..+-+ +.++. ++
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~Iri-Dmse~---------~e 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRL-DMSEF---------QE 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEe-chhhh---------hh
Confidence 46777777777777665421 1 345678899999999999999999876655554444 22221 11
Q ss_pred HHHHHHhcCCCCCCCccccHHHHHHhhcCCcc-eEEEecCCChH
Q 001161 267 QLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKV-LIVFDDVNHPR 309 (1134)
Q Consensus 267 ~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVLDdv~~~~ 309 (1134)
.+.+.+...... ..+....+.+.+++++| +|.||||+..+
T Consensus 633 --vskligsp~gyv-G~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 633 --VSKLIGSPPGYV-GKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred --hhhccCCCcccc-cchhHHHHHHHHhcCCceEEEEechhhcC
Confidence 222222221111 12224567788888876 77789997553
No 425
>PRK06547 hypothetical protein; Provisional
Probab=93.76 E-value=0.058 Score=54.67 Aligned_cols=27 Identities=37% Similarity=0.478 Sum_probs=23.9
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
....+|+|.|++|.||||+|+.++...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998864
No 426
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=93.75 E-value=1 Score=52.33 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=24.8
Q ss_pred HHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHH
Q 001161 204 IESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 204 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
+-.-|..+-+--..|+++|+.|+|||||.+-++-.
T Consensus 405 iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gd 439 (614)
T KOG0927|consen 405 IYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGD 439 (614)
T ss_pred hhhhhhcccCcccceeEecCCCCchhhhHHHHhhc
Confidence 33344443333456899999999999999988753
No 427
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=0.24 Score=51.09 Aligned_cols=61 Identities=21% Similarity=0.243 Sum_probs=39.3
Q ss_pred cHHHHHHhhcCCcceEEEecCCChHHHHHH------hcCcCCCCCCcEEEEEeCChhhhhhcCCCeEEE
Q 001161 285 DLNFQSKKLTRKKVLIVFDDVNHPRQIKIL------VGRLDLLASGSRIIITTRDRQVLANCGVDEVYQ 347 (1134)
Q Consensus 285 ~~~~l~~~L~~k~~LlVLDdv~~~~~l~~l------~~~~~~~~~gsrIiiTTR~~~~~~~~~~~~~~~ 347 (1134)
....+.+.+.-++-+.|||..++--+++++ ...+. .+|+-++|.|..+.++.....+.++-
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 345566666778889999988765443332 12222 45777888888888888776665543
No 428
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.71 E-value=0.11 Score=59.05 Aligned_cols=51 Identities=24% Similarity=0.300 Sum_probs=35.5
Q ss_pred CccccchhHHHHHHhhccC------------CCCeeEEEEEecCCChHHHHHHHHHHHHhccC
Q 001161 193 DLVGVRLPMKEIESLLRTG------------STNVYKLGIWGIGGIGKTTIAGAIFSKISRHF 243 (1134)
Q Consensus 193 ~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1134)
++||.+...+.+.-.+... ....+.|.++|++|+|||++|++++..+...|
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 4677777666665444321 11235689999999999999999998775443
No 429
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.70 E-value=0.22 Score=51.75 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.3
Q ss_pred CeeEEEEEecCCChHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
.-.+++|+|..|.|||||++.++-
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999885
No 430
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.66 E-value=0.33 Score=55.79 Aligned_cols=21 Identities=43% Similarity=0.613 Sum_probs=19.1
Q ss_pred eEEEEEecCCChHHHHHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIF 236 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~ 236 (1134)
-.++|+|+.|.|||||||.+.
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lv 383 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLV 383 (580)
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 359999999999999999985
No 431
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.65 E-value=0.00042 Score=81.51 Aligned_cols=86 Identities=26% Similarity=0.307 Sum_probs=42.6
Q ss_pred CCCCcEEEccCCcCcc-----cCccccCCCC-CCEEEecCCCCCCC---CcccccCCC-CCCCEEeccCCCCCC-----C
Q 001161 773 LEALDSLHAVGTAIRE-----LPPSIVRLKS-VRAIYFGRNRGLSL---PITFSVDGL-QNLRDLNLNDCGITE-----L 837 (1134)
Q Consensus 773 l~~L~~L~L~~n~i~~-----lp~~~~~l~~-L~~L~l~~n~~~~~---~~~~~~~~l-~~L~~L~Ls~n~l~~-----l 837 (1134)
..++++|.+.+|.++. +...+...+. +..|++.+|..... .....+..+ +.++.++++.|.|++ +
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 4555555555555541 1112223333 44456665552111 011123333 556667777776662 3
Q ss_pred ccccccccCcceeecCCCCcc
Q 001161 838 PESLGLLSLVTELHLEGNNFE 858 (1134)
Q Consensus 838 p~~l~~l~~L~~L~Ls~n~l~ 858 (1134)
...+..++.+++|.+++|.+.
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHhhhHHHHHhhcccCccc
Confidence 445555666777777777665
No 432
>PHA02244 ATPase-like protein
Probab=93.64 E-value=0.14 Score=57.35 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=32.2
Q ss_pred cCCccccchhHHH----HHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 191 NEDLVGVRLPMKE----IESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 191 ~~~~vGr~~~~~~----l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
...++|....+.. +..++..+ .-|.|+|++|+|||+||++++.....
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3456776655543 34444322 23788999999999999999987543
No 433
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.64 E-value=0.055 Score=55.28 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.3
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHh
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
++|.+.|++|.||||+|+++.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5799999999999999999987753
No 434
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.61 E-value=0.3 Score=50.65 Aligned_cols=26 Identities=31% Similarity=0.225 Sum_probs=22.5
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
.++.|.|++|+||||++..++..+..
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999876653
No 435
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.58 E-value=0.78 Score=49.97 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=26.9
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
+..+++++|.+|+||||+++.++..+..+-..+.++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i 109 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI 109 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 347899999999999999999887765432334444
No 436
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.56 E-value=0.15 Score=55.65 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=32.9
Q ss_pred HHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceee
Q 001161 204 IESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFF 248 (1134)
Q Consensus 204 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~ 248 (1134)
.++++. ..++.+|.|.|.+|.|||||+..+...+.......+.
T Consensus 95 ~r~~~~--~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 95 NRARFA--ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred HHHHHH--hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 444443 3568899999999999999999999988766544444
No 437
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.55 E-value=0.059 Score=54.32 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=20.9
Q ss_pred EEEEecCCChHHHHHHHHHHHHhc
Q 001161 218 LGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 218 v~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
|.|+|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 789999999999999999998754
No 438
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.55 E-value=0.84 Score=52.28 Aligned_cols=30 Identities=33% Similarity=0.381 Sum_probs=24.1
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
..++-+.+.|++|.|||.||++++-+....
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAsE~~at 213 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIATESGAT 213 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHhhhcce
Confidence 345567799999999999999999875443
No 439
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.54 E-value=0.34 Score=51.30 Aligned_cols=23 Identities=39% Similarity=0.367 Sum_probs=20.5
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
.|.|.|++|.||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998765
No 440
>PRK09165 replicative DNA helicase; Provisional
Probab=93.52 E-value=0.36 Score=57.87 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=34.1
Q ss_pred ccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 194 LVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 194 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
..|...-...|.+.+. +-....++.|.|.+|+||||+|..++..+..+
T Consensus 197 ~~gi~TG~~~LD~~~g-G~~~g~livIaarpg~GKT~~al~ia~~~a~~ 244 (497)
T PRK09165 197 LSGISTGLRDLDSKLG-GLHPSDLIILAGRPSMGKTALATNIAFNAAKA 244 (497)
T ss_pred CCcccCChHHHhhhcC-CCCCCceEEEEeCCCCChHHHHHHHHHHHHHh
Confidence 4455555566666552 33445679999999999999999988766543
No 441
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.50 E-value=0.00087 Score=78.91 Aligned_cols=69 Identities=25% Similarity=0.241 Sum_probs=41.2
Q ss_pred CccccCCCCCCeeeccCCcCCcc----cCcccCCC-CCCcEEeecCCCCCCC----CCccccCCCCCcEEEccCCcCc
Q 001161 719 PSSIECLSKLSRLDLADCKSLKS----LPSGLCKL-KSLDVLNIDGCSNLQR----LPEELGYLEALDSLHAVGTAIR 787 (1134)
Q Consensus 719 p~~~~~l~~L~~L~L~~n~~~~~----lp~~l~~l-~~L~~L~L~~~~~~~~----~p~~~~~l~~L~~L~L~~n~i~ 787 (1134)
-..+...+.|+.|++++|.+... +-..+... ..|++|.+..|.+... +...+.....|+.++++.|.+.
T Consensus 108 ~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 108 AQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence 34466677777777777775522 11112222 4566777777766543 3455556677777777777764
No 442
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.49 E-value=0.41 Score=59.19 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.9
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
.++|+++|+.|+||||.+..++..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 47999999999999999999987663
No 443
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=93.48 E-value=0.56 Score=45.87 Aligned_cols=51 Identities=16% Similarity=0.104 Sum_probs=33.1
Q ss_pred HHHHHHHHhcccEEEEecCCcccchhhHHHHHHHHHhhhccCcEEEeEEeeec
Q 001161 66 QSLLDAIEASSISIIVFSERYASSRWCLDELLKILECKKEYAQIVIPACYRVD 118 (1134)
Q Consensus 66 ~~~~~~i~~s~~~i~v~S~~y~~s~wc~~El~~~~~~~~~~~~~v~pvf~~v~ 118 (1134)
.++.++|++++..+.|+......+.+. .++.+.+.... .+..++.|+=+.|
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k~~iivlNK~D 53 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRKKNILLLNKAD 53 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCCcEEEEEechh
Confidence 367889999999999998765555442 24555554331 2345677776666
No 444
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.47 E-value=0.12 Score=58.80 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=36.6
Q ss_pred CccccchhHHHHHHhhccC--------C----CCeeEEEEEecCCChHHHHHHHHHHHHhccC
Q 001161 193 DLVGVRLPMKEIESLLRTG--------S----TNVYKLGIWGIGGIGKTTIAGAIFSKISRHF 243 (1134)
Q Consensus 193 ~~vGr~~~~~~l~~~L~~~--------~----~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1134)
.++|.+...+.+..++... . ...+.|.++|++|+|||+||+.++..+...|
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 4777777777776655320 0 1135689999999999999999998765433
No 445
>PRK08006 replicative DNA helicase; Provisional
Probab=93.45 E-value=0.48 Score=56.23 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=46.1
Q ss_pred ccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhc-cCCceeeeeechhHhhcCCHHHHHHHHHHHH
Q 001161 194 LVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISR-HFAGSFFARNVREAEETGRLGDLRQQLLSTL 272 (1134)
Q Consensus 194 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 272 (1134)
..|...-...|.+.+ .+-....++.|-|.+|+|||++|..++..+.. +-..++|+ +-+-...++..+++...
T Consensus 204 ~~Gi~TG~~~LD~~~-~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~f------SlEM~~~ql~~Rlla~~ 276 (471)
T PRK08006 204 VTGVNTGYDDLNKKT-AGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIF------SLEMPGEQIMMRMLASL 276 (471)
T ss_pred CCcccCCCHHHHHhh-cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEE------eccCCHHHHHHHHHHHh
Confidence 445555555555544 23344567899999999999999999877642 22234444 33456667777777654
No 446
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.43 E-value=0.076 Score=51.68 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.7
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
.++|.|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 4789999999999999998777665
No 447
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.42 E-value=0.2 Score=52.73 Aligned_cols=25 Identities=32% Similarity=0.225 Sum_probs=21.8
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
.-.+++|+|..|.|||||++.++..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998753
No 448
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.39 E-value=0.13 Score=62.23 Aligned_cols=50 Identities=20% Similarity=0.357 Sum_probs=41.4
Q ss_pred ccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 190 ENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
....++|....++++.+.+..-...-.-|.|+|..|.|||++|+.+.+.-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 45679999999999888877644445569999999999999999998753
No 449
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.38 E-value=0.28 Score=51.73 Aligned_cols=22 Identities=41% Similarity=0.371 Sum_probs=19.7
Q ss_pred EEEEecCCChHHHHHHHHHHHH
Q 001161 218 LGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 218 v~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
|.|.|++|.||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999988754
No 450
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.36 E-value=0.36 Score=50.58 Aligned_cols=59 Identities=14% Similarity=0.321 Sum_probs=34.5
Q ss_pred HHHhhcCCcceEEEecCCC---hHHHH-HHhcCcCCCC-C-CcEEEEEeCChhhhhhcCCCeEEEec
Q 001161 289 QSKKLTRKKVLIVFDDVNH---PRQIK-ILVGRLDLLA-S-GSRIIITTRDRQVLANCGVDEVYQMK 349 (1134)
Q Consensus 289 l~~~L~~k~~LlVLDdv~~---~~~l~-~l~~~~~~~~-~-gsrIiiTTR~~~~~~~~~~~~~~~l~ 349 (1134)
+...+..++-++++|+... ....+ .+...+.... . |..||++|.+...... .+.++.++
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l~ 196 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRVE 196 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEEe
Confidence 4455667888999998732 21222 2332222222 2 5678888888876643 56677664
No 451
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.35 E-value=0.025 Score=35.42 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=17.3
Q ss_pred CCCEEeccCCCCCCCcccccc
Q 001161 823 NLRDLNLNDCGITELPESLGL 843 (1134)
Q Consensus 823 ~L~~L~Ls~n~l~~lp~~l~~ 843 (1134)
+|++|+|++|+++.+|..+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 578999999999988887654
No 452
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.33 E-value=0.22 Score=55.31 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=56.6
Q ss_pred chhHHHHHHhhccCC-CCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCC
Q 001161 198 RLPMKEIESLLRTGS-TNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDG 276 (1134)
Q Consensus 198 ~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~ 276 (1134)
..-...|...|..++ +..+++-|+|..|+||||||..+.......-..++|++.- +.+. ...+..+..+.
T Consensus 35 ~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e------~~ld---~~~a~~lGvdl 105 (322)
T PF00154_consen 35 STGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAE------HALD---PEYAESLGVDL 105 (322)
T ss_dssp --S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESS------S------HHHHHHTT--G
T ss_pred ecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCc------ccch---hhHHHhcCccc
Confidence 344556777775332 4568999999999999999999888776666677888432 1111 12222222111
Q ss_pred CC-----CCCccccHHHHHHhhcC-CcceEEEecCCChH
Q 001161 277 NV-----KNFPNIDLNFQSKKLTR-KKVLIVFDDVNHPR 309 (1134)
Q Consensus 277 ~~-----~~~~~~~~~~l~~~L~~-k~~LlVLDdv~~~~ 309 (1134)
+. ....++........++. ..-++|+|-|....
T Consensus 106 ~rllv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al~ 144 (322)
T PF00154_consen 106 DRLLVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAALV 144 (322)
T ss_dssp GGEEEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-B
T ss_pred cceEEecCCcHHHHHHHHHHHhhcccccEEEEecCcccC
Confidence 11 12233444555555554 34588999886553
No 453
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.30 E-value=0.43 Score=52.53 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=25.7
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
.-.+++|+|..|.|||||++.++..+. ..+.+++
T Consensus 29 ~Ge~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i 62 (275)
T cd03289 29 PGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQI 62 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEE
Confidence 345799999999999999999986543 2344444
No 454
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.30 E-value=0.064 Score=54.66 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=23.3
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999998765
No 455
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.29 E-value=0.55 Score=48.72 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=20.0
Q ss_pred EEEEecCCChHHHHHHHHHHHH
Q 001161 218 LGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 218 v~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
|.|.|++|.||||+|+.++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998764
No 456
>PRK13949 shikimate kinase; Provisional
Probab=93.29 E-value=0.063 Score=54.37 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.7
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
.|.|+|++|.||||+|+.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998764
No 457
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.27 E-value=0.12 Score=51.00 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=29.9
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
.+..+|-++|.+|.||||||.+++.++..+.-.+..+
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 3457899999999999999999999887765544444
No 458
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.25 E-value=0.086 Score=53.96 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=22.8
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
+|+|.|.+|.||||||+.+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999877543
No 459
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.24 E-value=0.095 Score=58.34 Aligned_cols=35 Identities=31% Similarity=0.334 Sum_probs=28.2
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
.+++.+.|.||+||||+|.+.+-..+.....+.-+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlv 36 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLV 36 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEE
Confidence 47899999999999999999888777666544433
No 460
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.24 E-value=0.11 Score=54.27 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=29.0
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
....+|+|+|++|.||||||+.+...+...-.+.+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3456899999999999999999998775543345555
No 461
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.23 E-value=0.16 Score=57.19 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=34.3
Q ss_pred HHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHh--cc----CCceeeee
Q 001161 201 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKIS--RH----FAGSFFAR 250 (1134)
Q Consensus 201 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~--~~----f~~~~~~~ 250 (1134)
...|.++|..+-....++-|+|.+|+|||+|+..++-... .. -..++|++
T Consensus 112 ~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId 167 (344)
T PLN03187 112 SQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID 167 (344)
T ss_pred cHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE
Confidence 4456666764445567889999999999999998864321 11 23567774
No 462
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.19 E-value=1.1 Score=53.69 Aligned_cols=171 Identities=20% Similarity=0.201 Sum_probs=87.7
Q ss_pred CccccchhHHHHHHhhccCC--------CC---eeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCH
Q 001161 193 DLVGVRLPMKEIESLLRTGS--------TN---VYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRL 261 (1134)
Q Consensus 193 ~~vGr~~~~~~l~~~L~~~~--------~~---~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 261 (1134)
++=|+....+.+++.+.-.. .. ..-|.++|++|.|||-||-+++....-+| +. + .+.
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~f-----is-v------KGP 735 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRF-----IS-V------KGP 735 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeE-----EE-e------cCH
Confidence 45566666666666655432 11 22388999999999999999887543322 21 1 122
Q ss_pred HHHHHHHHHHHhcCCCCCCCccccHHHHHHhh-cCCcceEEEecCCCh-------------HHHHHHhcCcCCC--CCCc
Q 001161 262 GDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL-TRKKVLIVFDDVNHP-------------RQIKILVGRLDLL--ASGS 325 (1134)
Q Consensus 262 ~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~-------------~~l~~l~~~~~~~--~~gs 325 (1134)
+ ++..-.+. .++..+.+.++. ..+++.+.+|..+.. .....++..++.. -.|.
T Consensus 736 E-----lL~KyIGa------SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV 804 (952)
T KOG0735|consen 736 E-----LLSKYIGA------SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGV 804 (952)
T ss_pred H-----HHHHHhcc------cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceE
Confidence 2 22221111 122334444333 468999999998653 1245555554321 2455
Q ss_pred EEEE-EeCChhh----hhhcCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCCh
Q 001161 326 RIII-TTRDRQV----LANCGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVP 389 (1134)
Q Consensus 326 rIii-TTR~~~~----~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 389 (1134)
-|+- |||..-+ +..-..++.+.-+.-+..|-++++..-+-....+. .-..+.++.++.|.-
T Consensus 805 ~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~---~vdl~~~a~~T~g~t 870 (952)
T KOG0735|consen 805 YILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDT---DVDLECLAQKTDGFT 870 (952)
T ss_pred EEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCcc---ccchHHHhhhcCCCc
Confidence 5554 5554322 22112344444455566677777765442111111 122445666666654
No 463
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.19 E-value=0.11 Score=55.82 Aligned_cols=42 Identities=26% Similarity=0.357 Sum_probs=31.8
Q ss_pred HHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccC
Q 001161 202 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF 243 (1134)
Q Consensus 202 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1134)
.++...+.....+..+|||+|.||+|||||.-++-.++..+=
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G 79 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERG 79 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCC
Confidence 344444444456778999999999999999999888775543
No 464
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.15 E-value=0.41 Score=51.78 Aligned_cols=53 Identities=23% Similarity=0.118 Sum_probs=36.6
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHhcc-CCceeeeeechhHhhcCCHHHHHHHHHHH
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKISRH-FAGSFFARNVREAEETGRLGDLRQQLLST 271 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 271 (1134)
....++.|.|.+|.|||++|.+++.....+ =..++|+ +-+....++..+++..
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~------s~E~~~~~~~~r~~~~ 64 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFF------SLEMSKEQLLQRLLAS 64 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEE------eCCCCHHHHHHHHHHH
Confidence 445789999999999999999988766554 4455665 2334455566655443
No 465
>PRK06217 hypothetical protein; Validated
Probab=93.07 E-value=0.074 Score=54.77 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=21.6
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
.|.|.|++|.||||+|+++..++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998753
No 466
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.07 E-value=0.35 Score=50.52 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.7
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
.-.+++|+|..|.|||||.+.++-.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998764
No 467
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.06 E-value=0.15 Score=52.56 Aligned_cols=32 Identities=22% Similarity=0.094 Sum_probs=26.0
Q ss_pred EEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 218 LGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 218 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
+.|.|.+|+|||++|.+++......=..++|+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~ 33 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYV 33 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 67999999999999999887665554566676
No 468
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.06 E-value=0.11 Score=55.49 Aligned_cols=48 Identities=23% Similarity=0.205 Sum_probs=34.1
Q ss_pred HHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc-CCceeeee
Q 001161 203 EIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH-FAGSFFAR 250 (1134)
Q Consensus 203 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 250 (1134)
.|.++|..+=....++.|.|.+|.|||++|.+++.....+ =+.++|+.
T Consensus 7 ~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 7 GLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp THHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 4556664443556789999999999999999988765555 55667763
No 469
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.05 E-value=0.11 Score=53.51 Aligned_cols=43 Identities=28% Similarity=0.261 Sum_probs=32.5
Q ss_pred cCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHH
Q 001161 191 NEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 191 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
..+++|.+.....++-.... .+-+.++|.+|+|||++|+.+..
T Consensus 2 f~dI~GQe~aKrAL~iAAaG----~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG----GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC----C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHcC----CCCeEEECCCCCCHHHHHHHHHH
Confidence 45788988888887765542 35699999999999999999876
No 470
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.05 E-value=0.07 Score=51.69 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=22.6
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
+|.|.|++|.||||+|+.+++.+.-.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~ 27 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK 27 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc
Confidence 68999999999999999999876443
No 471
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.02 E-value=0.26 Score=55.35 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.9
Q ss_pred EEEEecCCChHHHHHHHHHHHHh
Q 001161 218 LGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 218 v~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
+.+.|++|.||||+++.+.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999998775
No 472
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.01 E-value=0.064 Score=54.96 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=21.0
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
+|+|.|.+|.||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 473
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=92.99 E-value=0.69 Score=55.61 Aligned_cols=47 Identities=23% Similarity=0.338 Sum_probs=37.7
Q ss_pred CCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHH
Q 001161 192 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
..++|....+.++.+.+..-...-..|.|+|.+|.|||++|+.+.+.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 46899998888887776543444456899999999999999998874
No 474
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.99 E-value=0.068 Score=56.68 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=22.0
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
+|||.|..|.||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998775
No 475
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=92.96 E-value=0.091 Score=53.17 Aligned_cols=33 Identities=21% Similarity=0.174 Sum_probs=26.1
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHh-ccCCcee
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKIS-RHFAGSF 247 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~ 247 (1134)
...+.+.|+.|+|||.||+++++.+. ......+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~ 36 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLI 36 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchH
Confidence 45688999999999999999999876 3443333
No 476
>COG3910 Predicted ATPase [General function prediction only]
Probab=92.95 E-value=0.62 Score=46.50 Aligned_cols=63 Identities=29% Similarity=0.429 Sum_probs=38.1
Q ss_pred HHHHHHhhcCCcceEEEecCCC----hHHHHHHhcCcCCCCCCcEEEEEeCChhhhhhcCCCeEEEecC
Q 001161 286 LNFQSKKLTRKKVLIVFDDVNH----PRQIKILVGRLDLLASGSRIIITTRDRQVLANCGVDEVYQMKE 350 (1134)
Q Consensus 286 ~~~l~~~L~~k~~LlVLDdv~~----~~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~~~~~~~~l~~ 350 (1134)
...+.+++.++ =+-|||.-+. ..|++-+.........|+.|||.|.++-++... ...+|++..
T Consensus 137 ~~i~~~rf~~~-GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP-~A~I~~~~~ 203 (233)
T COG3910 137 LAIFHNRFNGQ-GIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIP-GAEIYEISE 203 (233)
T ss_pred HHHHHHHhccC-ceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCC-CcEEEEEec
Confidence 44555555544 4678998643 345554443333336789999999988665433 445666543
No 477
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.94 E-value=0.52 Score=50.72 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=21.7
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
...+++|.|..|.|||||++.++-.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3467999999999999999999853
No 478
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=92.93 E-value=0.3 Score=53.75 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=21.3
Q ss_pred CCCeeEEEEEecCCChHHHHHHHHH
Q 001161 212 STNVYKLGIWGIGGIGKTTIAGAIF 236 (1134)
Q Consensus 212 ~~~~~vv~I~G~gGiGKTtLA~~~~ 236 (1134)
.+++..|.+.|.+|.|||.||.+..
T Consensus 242 d~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 242 DDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred CCCCCeEEeeccCCccHhHHHHHHH
Confidence 3678899999999999999987654
No 479
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.93 E-value=0.069 Score=52.61 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=21.0
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
+|.|.|.+|.||||+|+.++.++
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999875
No 480
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.93 E-value=0.076 Score=52.85 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.4
Q ss_pred EEEEecCCChHHHHHHHHHHHH
Q 001161 218 LGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 218 v~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
|.|+|++|.||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
No 481
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.92 E-value=0.47 Score=48.78 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=22.0
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
.-.+++|.|..|.|||||++.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999988643
No 482
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.92 E-value=0.48 Score=50.44 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=21.1
Q ss_pred CeeEEEEEecCCChHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
.-.+++|.|..|.|||||++.++-
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 346799999999999999999875
No 483
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.91 E-value=0.45 Score=51.16 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=21.6
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
...+++|+|..|.|||||++.++-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4467999999999999999998753
No 484
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=92.89 E-value=0.3 Score=60.58 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=20.9
Q ss_pred CeeEEEEEecCCChHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
....++|+|..|.|||||++.+..
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999998874
No 485
>PRK13946 shikimate kinase; Provisional
Probab=92.89 E-value=0.075 Score=54.77 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=22.2
Q ss_pred eEEEEEecCCChHHHHHHHHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
+.|.++|++|.||||+|+.+++++
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 569999999999999999999887
No 486
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.88 E-value=0.42 Score=50.59 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=21.2
Q ss_pred CeeEEEEEecCCChHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
...+++|.|..|.|||||++.++-
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhC
Confidence 445799999999999999999975
No 487
>PRK05439 pantothenate kinase; Provisional
Probab=92.87 E-value=0.13 Score=56.84 Aligned_cols=29 Identities=31% Similarity=0.418 Sum_probs=25.0
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
....+|||.|.+|+||||+|+.+...+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45678999999999999999999886654
No 488
>PRK13948 shikimate kinase; Provisional
Probab=92.85 E-value=0.083 Score=53.97 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.6
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
..+.|.++||.|.||||+++.++.++.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456799999999999999999998764
No 489
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.84 E-value=0.072 Score=55.66 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=21.0
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
+|+|.|..|+||||+|+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998766
No 490
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.84 E-value=0.76 Score=48.32 Aligned_cols=25 Identities=40% Similarity=0.490 Sum_probs=21.6
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
.-.+++|.|..|.|||||++.++-.
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4467999999999999999998753
No 491
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.83 E-value=0.12 Score=63.05 Aligned_cols=74 Identities=12% Similarity=0.175 Sum_probs=52.6
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhc-cCCceeeeeechhHhhcCCHHHHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISR-HFAGSFFARNVREAEETGRLGDLRQ 266 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~ 266 (1134)
+...+.++|.+..++.|...+... +.+.++|.+|.||||+|+++++.+.. .++...|..+ .......+.+
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n-----p~~~~~~~~~ 97 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN-----PEDPNNPKIR 97 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC-----CCcchHHHHH
Confidence 445567899999999888877543 46899999999999999999987643 3466777654 2334445555
Q ss_pred HHHH
Q 001161 267 QLLS 270 (1134)
Q Consensus 267 ~ll~ 270 (1134)
.+..
T Consensus 98 ~v~~ 101 (637)
T PRK13765 98 TVPA 101 (637)
T ss_pred HHHH
Confidence 5443
No 492
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=92.80 E-value=0.18 Score=55.87 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=37.6
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCC
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFA 244 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 244 (1134)
|...+.++=.......+...+.. .+.|.|.|.+|.||||+|+.++.++...|-
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~----~~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAY----DRRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 44444555555556666666643 245999999999999999999998765543
No 493
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.76 E-value=0.13 Score=53.80 Aligned_cols=117 Identities=19% Similarity=0.126 Sum_probs=57.8
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHH-HhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCC---ccccHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSK-ISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNF---PNIDLNFQ 289 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~---~~~~~~~l 289 (1134)
..++++|.|+.|.||||+.+.++-- +..+ ..+++.+. ...+ .+.+.+...+......... .......+
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la~--~G~~vpa~-----~~~l-~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~ 99 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMAQ--IGCFVPAE-----YATL-PIFNRLLSRLSNDDSMERNLSTFASEMSET 99 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHH--cCCCcchh-----hcCc-cChhheeEecCCccccchhhhHHHHHHHHH
Confidence 4478999999999999999988742 1111 12333111 0000 1122222222111111100 00011112
Q ss_pred HHh--hcCCcceEEEecCC---ChHH----HHHHhcCcCCCCCCcEEEEEeCChhhhhhc
Q 001161 290 SKK--LTRKKVLIVFDDVN---HPRQ----IKILVGRLDLLASGSRIIITTRDRQVLANC 340 (1134)
Q Consensus 290 ~~~--L~~k~~LlVLDdv~---~~~~----l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~ 340 (1134)
... +..++-|+++|... +..+ ...+...+. ..|..+|++|.+..++...
T Consensus 100 ~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 100 AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAIL 157 (204)
T ss_pred HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHh
Confidence 222 23567899999972 2222 122222222 3478999999998887654
No 494
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.73 E-value=0.08 Score=52.08 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=18.4
Q ss_pred EEEEEecCCChHHHHHHHHH
Q 001161 217 KLGIWGIGGIGKTTIAGAIF 236 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~ 236 (1134)
.|+|+|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999998877
No 495
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.72 E-value=0.087 Score=54.03 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHh
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
++++|+|+.|+||||||+.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999987653
No 496
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=92.68 E-value=0.34 Score=60.15 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=22.2
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
....++|+|..|.|||||++.+...+
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44679999999999999999987654
No 497
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.68 E-value=0.39 Score=59.58 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=20.7
Q ss_pred CeeEEEEEecCCChHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
.-..|+|+|..|.|||||||.+..
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345699999999999999998864
No 498
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.66 E-value=0.29 Score=49.26 Aligned_cols=22 Identities=36% Similarity=0.672 Sum_probs=19.7
Q ss_pred EEEEecCCChHHHHHHHHHHHH
Q 001161 218 LGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 218 v~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
|.|+|++|.||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998775
No 499
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.65 E-value=0.15 Score=62.47 Aligned_cols=57 Identities=16% Similarity=0.263 Sum_probs=42.8
Q ss_pred cCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc-CCceeeeee
Q 001161 191 NEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH-FAGSFFARN 251 (1134)
Q Consensus 191 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~ 251 (1134)
.++++|.+..++.+...+..+ +.+.++|++|+||||+|+++++.+... |...+++.+
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n 74 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPN 74 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeC
Confidence 356889998888888877643 356699999999999999999877554 344455543
No 500
>PRK08840 replicative DNA helicase; Provisional
Probab=92.62 E-value=0.74 Score=54.53 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=46.4
Q ss_pred ccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhc-cCCceeeeeechhHhhcCCHHHHHHHHHHHH
Q 001161 194 LVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISR-HFAGSFFARNVREAEETGRLGDLRQQLLSTL 272 (1134)
Q Consensus 194 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 272 (1134)
+.|...-...|.+.+. +-.....+.|-|.+|+|||++|..++..... +-..++|+ +-+-...++..+++...
T Consensus 197 ~~gi~TG~~~LD~~~~-G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~f------SlEMs~~ql~~Rlla~~ 269 (464)
T PRK08840 197 VTGVDTGFTDLNKKTA-GLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIF------SLEMPAEQLMMRMLASL 269 (464)
T ss_pred CCCcCCCcHHHHHhhc-CCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEE------eccCCHHHHHHHHHHhh
Confidence 4555555555555442 3344567899999999999999988876642 22233344 33455667777776654
Q ss_pred h
Q 001161 273 L 273 (1134)
Q Consensus 273 ~ 273 (1134)
.
T Consensus 270 s 270 (464)
T PRK08840 270 S 270 (464)
T ss_pred C
Confidence 3
Done!