Query 001161
Match_columns 1134
No_of_seqs 1158 out of 6394
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 14:10:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001161.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001161hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 5.6E-49 1.9E-53 392.8 12.5 173 13-185 27-202 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 7.4E-48 2.5E-52 379.8 11.0 170 17-188 4-175 (176)
3 2a5y_B CED-4; apoptosis; HET: 100.0 1.1E-39 3.6E-44 395.8 23.9 300 195-506 131-472 (549)
4 3rgz_A Protein brassinosteroid 100.0 8.8E-39 3E-43 405.5 19.9 433 539-995 204-723 (768)
5 3rgz_A Protein brassinosteroid 100.0 5.5E-38 1.9E-42 398.2 17.6 410 539-964 227-723 (768)
6 3t6q_A CD180 antigen; protein- 100.0 5E-35 1.7E-39 362.6 26.7 406 539-961 37-539 (606)
7 3t6q_A CD180 antigen; protein- 100.0 6.4E-35 2.2E-39 361.6 23.5 373 540-925 17-459 (606)
8 3sfz_A APAF-1, apoptotic pepti 100.0 2.5E-34 8.6E-39 387.0 23.0 308 186-505 118-452 (1249)
9 3vq2_A TLR4, TOLL-like recepto 100.0 2.3E-34 8E-39 356.6 20.4 398 539-958 36-534 (606)
10 1vt4_I APAF-1 related killer D 100.0 7.9E-35 2.7E-39 353.7 13.8 280 192-498 128-436 (1221)
11 4eco_A Uncharacterized protein 100.0 1.5E-34 5.2E-39 358.1 14.4 336 618-963 192-583 (636)
12 4eco_A Uncharacterized protein 100.0 9.9E-34 3.4E-38 350.8 21.3 331 587-925 206-597 (636)
13 3j0a_A TOLL-like receptor 5; m 100.0 2.3E-33 7.8E-38 359.6 23.9 406 539-959 28-518 (844)
14 4ecn_A Leucine-rich repeat pro 100.0 2.1E-33 7.3E-38 352.9 21.9 353 587-956 448-862 (876)
15 3vq2_A TLR4, TOLL-like recepto 100.0 2.2E-33 7.6E-38 347.8 21.6 405 539-963 60-563 (606)
16 2z81_A CD282 antigen, TOLL-lik 100.0 4.2E-34 1.4E-38 349.9 13.4 403 538-962 29-490 (549)
17 2z63_A TOLL-like receptor 4, v 100.0 2.4E-33 8.2E-38 345.0 19.7 150 539-694 32-190 (570)
18 2z63_A TOLL-like receptor 4, v 100.0 1.8E-33 6E-38 346.2 18.3 405 539-966 56-539 (570)
19 4ecn_A Leucine-rich repeat pro 100.0 2.1E-33 7.2E-38 353.0 18.5 345 611-964 425-824 (876)
20 1z6t_A APAF-1, apoptotic prote 100.0 9.7E-33 3.3E-37 340.2 23.7 343 186-543 118-508 (591)
21 3j0a_A TOLL-like receptor 5; m 100.0 4.9E-32 1.7E-36 347.2 28.0 412 536-964 5-499 (844)
22 1ziw_A TOLL-like receptor 3; i 100.0 2.3E-31 8E-36 334.2 32.9 250 703-962 329-626 (680)
23 1ziw_A TOLL-like receptor 3; i 100.0 5.7E-32 1.9E-36 339.8 26.7 405 539-959 29-518 (680)
24 2z7x_B TOLL-like receptor 1, v 100.0 1.8E-32 6.1E-37 333.0 14.2 399 538-960 24-483 (520)
25 1o6v_A Internalin A; bacterial 100.0 6.6E-30 2.3E-34 305.3 26.0 320 587-959 68-389 (466)
26 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-30 5.3E-35 315.9 20.8 372 562-963 3-461 (520)
27 3v47_A TOLL-like receptor 5B a 100.0 8.3E-31 2.9E-35 312.7 18.1 363 590-963 13-413 (455)
28 1jl5_A Outer protein YOPM; leu 100.0 4.2E-30 1.4E-34 304.2 23.1 366 540-959 16-410 (454)
29 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-30 3.6E-35 319.7 16.0 420 540-995 10-491 (549)
30 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.1E-30 1E-34 316.0 20.1 379 559-962 31-514 (562)
31 1o6v_A Internalin A; bacterial 100.0 2.5E-28 8.5E-33 291.6 28.0 333 540-899 51-385 (466)
32 3bz5_A Internalin-J, INLJ; leu 100.0 1.9E-28 6.5E-33 290.3 23.2 361 552-999 35-397 (457)
33 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.3E-28 1.5E-32 296.9 26.0 347 539-902 56-510 (562)
34 3v47_A TOLL-like receptor 5B a 100.0 2E-28 7E-33 292.0 22.5 338 559-902 30-408 (455)
35 4fmz_A Internalin; leucine ric 100.0 2.1E-27 7.1E-32 272.4 28.5 295 589-899 46-343 (347)
36 3h16_A TIR protein; bacteria T 100.0 6.3E-30 2.2E-34 253.2 6.3 121 16-137 15-136 (154)
37 3bz5_A Internalin-J, INLJ; leu 100.0 2.4E-27 8.2E-32 280.8 27.6 301 587-959 42-353 (457)
38 1jl5_A Outer protein YOPM; leu 100.0 3.4E-27 1.2E-31 279.3 27.7 320 587-962 111-433 (454)
39 4fmz_A Internalin; leucine ric 100.0 2.1E-27 7.3E-32 272.3 25.2 307 553-881 38-346 (347)
40 2id5_A Lingo-1, leucine rich r 100.0 6.1E-28 2.1E-32 289.6 20.9 306 590-925 14-330 (477)
41 4g8a_A TOLL-like receptor 4; l 100.0 8.1E-28 2.8E-32 299.7 20.2 409 538-961 55-583 (635)
42 3o6n_A APL1; leucine-rich repe 99.9 9.2E-27 3.2E-31 271.5 23.8 294 587-925 45-349 (390)
43 2id5_A Lingo-1, leucine rich r 99.9 1.2E-26 4.1E-31 278.3 23.5 292 587-881 32-333 (477)
44 3oja_B Anopheles plasmodium-re 99.9 1.5E-26 5.3E-31 284.7 24.1 295 587-925 51-355 (597)
45 1xku_A Decorin; proteoglycan, 99.9 1.1E-25 3.7E-30 256.1 26.8 241 587-881 31-276 (330)
46 2ft3_A Biglycan; proteoglycan, 99.9 1.4E-25 4.9E-30 255.3 24.4 284 587-925 33-330 (332)
47 3o6n_A APL1; leucine-rich repe 99.9 3.1E-25 1.1E-29 258.6 26.8 305 605-959 41-353 (390)
48 4g8a_A TOLL-like receptor 4; l 99.9 2.6E-25 8.8E-30 277.0 23.5 405 538-962 34-559 (635)
49 3oja_B Anopheles plasmodium-re 99.9 9.5E-25 3.2E-29 268.7 28.1 305 606-960 48-360 (597)
50 1ogq_A PGIP-2, polygalacturona 99.9 2.6E-25 9E-30 250.4 15.9 245 658-904 50-306 (313)
51 1ogq_A PGIP-2, polygalacturona 99.9 6.9E-25 2.4E-29 246.9 13.1 249 610-885 51-308 (313)
52 3g06_A SSPH2 (leucine-rich rep 99.9 3E-23 1E-27 252.8 26.8 262 588-886 41-302 (622)
53 1xku_A Decorin; proteoglycan, 99.9 2.7E-23 9.2E-28 236.2 24.6 286 558-879 30-330 (330)
54 2ft3_A Biglycan; proteoglycan, 99.9 3E-23 1E-27 236.0 24.8 289 559-879 33-331 (332)
55 2z80_A TOLL-like receptor 2, v 99.9 1.2E-23 4.3E-28 241.4 16.9 272 587-885 31-318 (353)
56 4fcg_A Uncharacterized protein 99.9 6.7E-23 2.3E-27 232.1 22.0 217 658-878 81-311 (328)
57 3g06_A SSPH2 (leucine-rich rep 99.9 5.1E-22 1.8E-26 241.9 31.0 268 610-945 41-308 (622)
58 4fcg_A Uncharacterized protein 99.9 5.9E-23 2E-27 232.6 19.0 202 680-885 80-294 (328)
59 2z80_A TOLL-like receptor 2, v 99.9 6.1E-24 2.1E-28 244.0 8.9 269 682-959 32-315 (353)
60 2z66_A Variable lymphocyte rec 99.9 4.1E-23 1.4E-27 232.1 15.5 244 590-882 10-262 (306)
61 3zyj_A Leucine-rich repeat-con 99.9 4.7E-22 1.6E-26 235.4 23.7 243 588-880 44-291 (440)
62 3zyi_A Leucine-rich repeat-con 99.9 6.4E-22 2.2E-26 235.1 24.4 243 588-880 55-302 (452)
63 3ub2_A TOLL/interleukin-1 rece 99.9 2.2E-24 7.6E-29 209.4 1.3 134 16-151 5-145 (146)
64 1z7x_W Ribonuclease inhibitor; 99.9 1.5E-25 5.2E-30 267.6 -9.0 335 587-925 3-408 (461)
65 1ozn_A Reticulon 4 receptor; N 99.9 4.5E-22 1.6E-26 221.0 19.6 221 590-858 14-238 (285)
66 1z7x_W Ribonuclease inhibitor; 99.9 3.3E-25 1.1E-29 264.7 -8.4 198 703-901 170-410 (461)
67 3zyj_A Leucine-rich repeat-con 99.9 2.7E-21 9.4E-26 228.8 24.4 239 683-925 45-289 (440)
68 1wwl_A Monocyte differentiatio 99.9 5E-23 1.7E-27 231.8 8.9 201 656-882 93-310 (312)
69 2z66_A Variable lymphocyte rec 99.9 1.2E-21 4.1E-26 220.1 20.2 220 658-902 28-261 (306)
70 3zyi_A Leucine-rich repeat-con 99.9 3.7E-21 1.3E-25 228.6 24.9 239 683-925 56-300 (452)
71 1ozn_A Reticulon 4 receptor; N 99.9 1.3E-21 4.3E-26 217.5 18.6 179 704-883 57-240 (285)
72 3o53_A Protein LRIM1, AGAP0063 99.9 8.9E-23 3.1E-27 230.3 6.2 257 611-902 12-275 (317)
73 3o53_A Protein LRIM1, AGAP0063 99.9 1.3E-21 4.4E-26 220.8 14.4 219 722-960 54-278 (317)
74 1wwl_A Monocyte differentiatio 99.8 1E-21 3.5E-26 221.0 10.9 238 679-925 41-306 (312)
75 3oja_A Leucine-rich immune mol 99.8 1.4E-21 4.6E-26 233.6 9.8 196 653-881 53-250 (487)
76 3oja_A Leucine-rich immune mol 99.8 4.1E-21 1.4E-25 229.4 12.6 231 656-922 32-269 (487)
77 2xwt_C Thyrotropin receptor; s 99.8 5.6E-20 1.9E-24 198.4 15.9 206 693-900 22-237 (239)
78 3ogk_B Coronatine-insensitive 99.8 1.6E-22 5.3E-27 249.7 -5.1 397 552-959 66-527 (592)
79 2o6q_A Variable lymphocyte rec 99.8 6.3E-19 2.2E-23 193.8 22.3 197 682-880 17-217 (270)
80 2z62_A TOLL-like receptor 4, v 99.8 2.8E-19 9.6E-24 197.4 19.2 161 721-882 71-238 (276)
81 2z62_A TOLL-like receptor 4, v 99.8 3.6E-19 1.2E-23 196.6 19.5 206 697-925 22-234 (276)
82 1p9a_G Platelet glycoprotein I 99.8 8.6E-19 2.9E-23 194.5 21.4 195 680-879 9-206 (290)
83 1fyx_A TOLL-like receptor 2; b 99.8 5E-21 1.7E-25 187.4 1.7 97 18-116 2-103 (149)
84 2js7_A Myeloid differentiation 99.8 1E-20 3.5E-25 186.9 3.8 101 17-119 12-117 (160)
85 2o6q_A Variable lymphocyte rec 99.8 2.4E-18 8.4E-23 189.1 22.2 177 703-882 16-195 (270)
86 3rfs_A Internalin B, repeat mo 99.8 3.2E-19 1.1E-23 196.3 14.1 196 703-906 41-239 (272)
87 3ogk_B Coronatine-insensitive 99.8 1E-20 3.5E-25 233.3 2.2 127 655-782 217-350 (592)
88 2j67_A TOLL like receptor 10; 99.8 2.4E-20 8.2E-25 187.1 3.8 101 16-118 30-135 (178)
89 3rfs_A Internalin B, repeat mo 99.8 1.4E-18 4.7E-23 191.3 17.9 210 653-893 36-247 (272)
90 1h6u_A Internalin H; cell adhe 99.8 2.7E-18 9.4E-23 192.4 20.1 194 654-881 37-230 (308)
91 1t3g_A X-linked interleukin-1 99.8 7.9E-20 2.7E-24 180.4 6.4 101 20-120 1-115 (159)
92 4ay9_X Follicle-stimulating ho 99.8 2E-18 6.7E-23 197.5 19.1 238 684-925 12-256 (350)
93 4glp_A Monocyte differentiatio 99.8 5E-19 1.7E-23 198.9 13.5 218 659-880 65-306 (310)
94 1p9a_G Platelet glycoprotein I 99.8 4.8E-18 1.6E-22 188.5 21.2 200 654-858 6-208 (290)
95 4glp_A Monocyte differentiatio 99.8 1.3E-18 4.3E-23 195.6 16.0 196 725-925 90-304 (310)
96 2p1m_B Transport inhibitor res 99.8 1.4E-21 4.9E-26 241.1 -9.1 392 553-957 60-518 (594)
97 1h6u_A Internalin H; cell adhe 99.8 6.3E-18 2.2E-22 189.5 19.6 186 704-900 42-228 (308)
98 4ay9_X Follicle-stimulating ho 99.8 4.9E-18 1.7E-22 194.2 18.5 238 590-877 12-255 (350)
99 2p1m_B Transport inhibitor res 99.8 1.6E-21 5.5E-26 240.7 -11.3 360 556-925 102-516 (594)
100 3m19_A Variable lymphocyte rec 99.8 9.8E-18 3.3E-22 182.1 19.5 177 704-883 15-194 (251)
101 2ca6_A RAN GTPase-activating p 99.8 6.3E-20 2.2E-24 213.3 0.1 241 712-959 18-317 (386)
102 2xwt_C Thyrotropin receptor; s 99.7 6.6E-18 2.3E-22 182.0 15.2 195 658-879 31-237 (239)
103 2ca6_A RAN GTPase-activating p 99.7 1.1E-19 3.8E-24 211.2 -0.0 163 718-881 114-316 (386)
104 2ast_B S-phase kinase-associat 99.7 4.3E-19 1.5E-23 202.1 3.9 251 682-964 48-312 (336)
105 3cvr_A Invasion plasmid antige 99.7 3.4E-17 1.2E-21 196.9 19.3 182 659-886 60-248 (571)
106 3m19_A Variable lymphocyte rec 99.7 7.7E-17 2.6E-21 175.0 19.9 177 681-859 14-193 (251)
107 2ast_B S-phase kinase-associat 99.7 1.4E-18 4.9E-23 197.7 4.4 243 660-906 49-310 (336)
108 3goz_A Leucine-rich repeat-con 99.7 6.6E-18 2.2E-22 194.2 9.3 239 662-925 2-294 (362)
109 1h6t_A Internalin B; cell adhe 99.7 2E-16 6.9E-21 175.5 18.1 168 704-882 47-214 (291)
110 3cvr_A Invasion plasmid antige 99.7 2.5E-16 8.5E-21 189.4 19.4 193 633-867 60-253 (571)
111 2o6s_A Variable lymphocyte rec 99.7 2.3E-16 8E-21 165.9 15.7 178 706-892 10-189 (208)
112 3goz_A Leucine-rich repeat-con 99.7 5.3E-18 1.8E-22 195.0 2.1 230 653-900 17-295 (362)
113 1m9s_A Internalin B; cell inva 99.7 1.3E-16 4.5E-21 194.0 14.3 169 703-882 43-211 (605)
114 2qen_A Walker-type ATPase; unk 99.7 1.5E-15 5E-20 173.8 19.4 292 185-499 5-349 (350)
115 2o6s_A Variable lymphocyte rec 99.6 1.4E-15 4.8E-20 159.9 15.4 184 685-880 11-197 (208)
116 1h6t_A Internalin B; cell adhe 99.6 1.5E-15 5.1E-20 168.5 16.3 176 654-862 42-217 (291)
117 1xeu_A Internalin C; cellular 99.6 4.2E-16 1.4E-20 170.1 11.0 169 703-883 19-187 (263)
118 4ezg_A Putative uncharacterize 99.6 4E-16 1.4E-20 162.5 9.8 152 723-881 41-194 (197)
119 2xot_A Amphoterin-induced prot 99.6 1.2E-15 4.1E-20 175.1 14.6 172 706-880 21-201 (361)
120 2v9t_B SLIT homolog 2 protein 99.6 4.2E-15 1.4E-19 157.6 16.0 150 706-858 14-165 (220)
121 1m9s_A Internalin B; cell inva 99.6 1.3E-15 4.6E-20 185.2 13.1 187 704-902 22-210 (605)
122 2fna_A Conserved hypothetical 99.6 4E-15 1.4E-19 170.6 16.4 290 185-498 6-356 (357)
123 4ezg_A Putative uncharacterize 99.6 4.5E-15 1.5E-19 154.5 13.4 150 703-858 44-194 (197)
124 3e6j_A Variable lymphocyte rec 99.6 1.4E-14 4.9E-19 154.5 17.2 153 705-883 21-174 (229)
125 2v70_A SLIT-2, SLIT homolog 2 99.6 1.1E-14 3.7E-19 154.4 15.7 149 707-858 15-166 (220)
126 1dce_A Protein (RAB geranylger 99.6 3.4E-17 1.2E-21 198.1 -4.4 178 703-885 349-550 (567)
127 2xot_A Amphoterin-induced prot 99.6 8.8E-15 3E-19 167.9 15.9 173 684-858 21-202 (361)
128 1dce_A Protein (RAB geranylger 99.6 1.8E-17 6E-22 200.6 -7.9 213 607-875 347-567 (567)
129 1w5s_A Origin recognition comp 99.6 3.7E-14 1.3E-18 166.1 18.7 284 190-483 20-371 (412)
130 4b8c_D Glucose-repressible alc 99.6 6.9E-16 2.4E-20 192.7 3.9 153 741-899 215-369 (727)
131 3e6j_A Variable lymphocyte rec 99.5 6.6E-14 2.2E-18 149.4 17.3 152 682-835 20-172 (229)
132 2v70_A SLIT-2, SLIT homolog 2 99.5 4.7E-14 1.6E-18 149.4 15.8 151 684-836 14-167 (220)
133 2v9t_B SLIT homolog 2 protein 99.5 8.5E-14 2.9E-18 147.4 16.4 151 684-836 14-166 (220)
134 1xeu_A Internalin C; cellular 99.5 1.2E-14 4E-19 158.6 9.4 149 703-862 41-189 (263)
135 4b8c_D Glucose-repressible alc 99.5 4.4E-15 1.5E-19 185.4 4.8 164 705-878 203-369 (727)
136 2qby_B CDC6 homolog 3, cell di 99.5 1.7E-12 5.9E-17 150.3 25.0 275 191-483 19-339 (384)
137 2ell_A Acidic leucine-rich nuc 99.5 1.1E-13 3.7E-18 140.0 10.8 133 726-861 24-163 (168)
138 2ell_A Acidic leucine-rich nuc 99.5 1.3E-13 4.5E-18 139.3 10.4 135 703-840 24-165 (168)
139 2je0_A Acidic leucine-rich nuc 99.5 1.2E-13 4.1E-18 136.6 9.6 126 750-877 17-149 (149)
140 2v1u_A Cell division control p 99.4 9.7E-12 3.3E-16 144.1 23.1 305 190-531 17-382 (387)
141 2qby_A CDC6 homolog 1, cell di 99.4 5.8E-12 2E-16 145.9 20.6 283 190-483 18-348 (386)
142 1w8a_A SLIT protein; signaling 99.4 1E-12 3.5E-17 135.9 11.4 126 706-834 11-138 (192)
143 1a9n_A U2A', U2A'; complex (nu 99.4 6.2E-13 2.1E-17 135.5 9.5 104 775-880 43-152 (176)
144 2je0_A Acidic leucine-rich nuc 99.4 5.9E-13 2E-17 131.6 8.4 126 726-854 17-149 (149)
145 2wfh_A SLIT homolog 2 protein 99.3 8.1E-12 2.8E-16 129.1 14.4 124 684-808 13-137 (193)
146 1fnn_A CDC6P, cell division co 99.3 3E-11 1E-15 140.0 19.5 284 190-484 15-352 (389)
147 1w8a_A SLIT protein; signaling 99.3 9.5E-12 3.3E-16 128.5 13.3 124 684-808 11-137 (192)
148 2wfh_A SLIT homolog 2 protein 99.3 1.5E-11 5E-16 127.1 13.5 126 706-858 13-139 (193)
149 1ds9_A Outer arm dynein; leuci 99.3 5.1E-14 1.7E-18 146.6 -5.7 148 722-874 14-180 (198)
150 1a9n_A U2A', U2A'; complex (nu 99.3 3.9E-12 1.3E-16 129.5 8.4 135 722-861 15-156 (176)
151 2o6r_A Variable lymphocyte rec 99.3 3.5E-11 1.2E-15 122.5 14.7 128 705-858 9-137 (177)
152 3sb4_A Hypothetical leucine ri 99.3 7.3E-12 2.5E-16 141.5 10.3 124 749-875 201-328 (329)
153 1njg_A DNA polymerase III subu 99.2 1.1E-10 3.9E-15 125.4 15.4 200 188-399 19-231 (250)
154 2o6r_A Variable lymphocyte rec 99.2 1.4E-10 4.8E-15 118.0 14.4 125 683-808 9-135 (177)
155 1ds9_A Outer arm dynein; leuci 99.2 2.3E-13 8E-18 141.6 -6.5 134 748-885 16-157 (198)
156 3sb4_A Hypothetical leucine ri 99.2 1.2E-11 4.2E-16 139.6 6.9 189 725-921 100-327 (329)
157 4fdw_A Leucine rich hypothetic 99.2 7.4E-10 2.5E-14 127.9 20.0 62 816-880 294-357 (401)
158 4fdw_A Leucine rich hypothetic 99.1 3.7E-09 1.3E-13 122.0 22.8 211 703-925 157-380 (401)
159 2r9u_A Variable lymphocyte rec 99.1 2.8E-10 9.6E-15 115.2 11.4 102 777-881 15-118 (174)
160 2chg_A Replication factor C sm 99.1 1.1E-09 3.8E-14 115.8 16.2 191 187-398 12-206 (226)
161 3g39_A Variable lymphocyte rec 99.1 3.7E-10 1.3E-14 113.9 11.5 104 776-882 11-116 (170)
162 3g39_A Variable lymphocyte rec 99.1 7E-10 2.4E-14 111.9 11.8 102 705-808 11-113 (170)
163 2r9u_A Variable lymphocyte rec 99.0 7.4E-10 2.5E-14 112.1 11.9 101 706-808 15-116 (174)
164 4fs7_A Uncharacterized protein 99.0 2.2E-08 7.6E-13 115.9 21.3 305 547-876 59-374 (394)
165 1sxj_B Activator 1 37 kDa subu 98.9 4.7E-09 1.6E-13 118.0 14.4 186 188-396 17-210 (323)
166 3un9_A NLR family member X1; l 98.9 1.7E-10 5.7E-15 132.0 -1.9 132 726-858 101-252 (372)
167 4fs7_A Uncharacterized protein 98.8 3.9E-08 1.3E-12 113.8 17.8 305 547-873 82-393 (394)
168 3un9_A NLR family member X1; l 98.8 1.6E-10 5.6E-15 132.1 -2.5 156 725-881 71-252 (372)
169 1iqp_A RFCS; clamp loader, ext 98.8 1.2E-08 4E-13 115.0 12.2 190 187-398 20-214 (327)
170 1hqc_A RUVB; extended AAA-ATPa 98.8 1.2E-07 4E-12 106.6 19.3 257 188-487 8-302 (324)
171 2ifg_A High affinity nerve gro 98.8 8.7E-09 3E-13 117.2 10.0 101 707-808 12-114 (347)
172 2ifg_A High affinity nerve gro 98.7 1.6E-08 5.6E-13 114.9 9.8 103 754-858 12-116 (347)
173 2chq_A Replication factor C sm 98.7 2E-07 6.9E-12 104.3 15.3 187 187-396 12-204 (319)
174 2ra8_A Uncharacterized protein 98.6 2.1E-08 7.3E-13 113.4 6.1 160 719-881 132-320 (362)
175 3pfi_A Holliday junction ATP-d 98.6 6E-07 2.1E-11 101.4 17.7 257 188-489 25-319 (338)
176 2ra8_A Uncharacterized protein 98.6 2.3E-08 7.8E-13 113.2 5.7 156 718-879 164-341 (362)
177 4gt6_A Cell surface protein; l 98.6 3.1E-06 1.1E-10 97.7 23.2 107 769-879 260-368 (394)
178 1jr3_A DNA polymerase III subu 98.6 5.8E-07 2E-11 103.1 16.2 197 188-397 12-222 (373)
179 3d8b_A Fidgetin-like protein 1 98.5 2.4E-06 8.3E-11 96.9 18.9 202 167-397 62-296 (357)
180 3h4m_A Proteasome-activating n 98.5 1.3E-06 4.6E-11 95.9 16.3 183 188-395 13-230 (285)
181 1sxj_A Activator 1 95 kDa subu 98.5 9.8E-07 3.4E-11 105.3 15.7 195 187-395 34-252 (516)
182 3te6_A Regulatory protein SIR3 98.5 9.9E-07 3.4E-11 96.8 14.2 165 193-364 21-211 (318)
183 1jbk_A CLPB protein; beta barr 98.5 1.2E-06 4E-11 89.8 13.8 51 189-241 19-69 (195)
184 3bos_A Putative DNA replicatio 98.5 3.7E-07 1.3E-11 97.5 10.3 175 190-397 26-218 (242)
185 1d2n_A N-ethylmaleimide-sensit 98.4 4.5E-06 1.5E-10 90.9 18.4 198 192-417 33-264 (272)
186 4gt6_A Cell surface protein; l 98.4 1.1E-05 3.9E-10 93.0 22.7 102 792-899 260-367 (394)
187 3eie_A Vacuolar protein sortin 98.4 7.4E-06 2.5E-10 91.5 20.1 184 187-396 13-228 (322)
188 2z4s_A Chromosomal replication 98.4 1.3E-06 4.5E-11 101.7 12.5 183 191-395 104-305 (440)
189 4h09_A Hypothetical leucine ri 98.4 3.6E-05 1.2E-09 88.2 24.4 126 746-876 213-341 (379)
190 1sxj_D Activator 1 41 kDa subu 98.3 3.9E-06 1.3E-10 95.3 15.6 198 187-396 32-235 (353)
191 1sxj_E Activator 1 40 kDa subu 98.3 2.4E-06 8.1E-11 97.2 12.6 201 186-396 8-237 (354)
192 2qp9_X Vacuolar protein sortin 98.3 1.8E-05 6.2E-10 89.5 19.5 183 189-396 48-261 (355)
193 1xwi_A SKD1 protein; VPS4B, AA 98.3 1.4E-05 4.9E-10 88.9 18.1 184 189-397 9-224 (322)
194 2qz4_A Paraplegin; AAA+, SPG7, 98.3 5.2E-06 1.8E-10 89.9 13.6 183 191-396 5-222 (262)
195 3uk6_A RUVB-like 2; hexameric 98.3 7E-06 2.4E-10 93.8 15.4 199 191-396 43-303 (368)
196 3b9p_A CG5977-PA, isoform A; A 98.3 5.5E-06 1.9E-10 91.6 13.7 196 175-396 3-233 (297)
197 1l8q_A Chromosomal replication 98.3 9.3E-06 3.2E-10 90.9 15.7 179 190-392 9-204 (324)
198 3pvs_A Replication-associated 98.2 9.2E-06 3.1E-10 94.4 14.9 180 188-396 22-215 (447)
199 3vfd_A Spastin; ATPase, microt 98.2 1.5E-05 5E-10 91.7 15.9 185 187-396 110-326 (389)
200 3syl_A Protein CBBX; photosynt 98.2 1.3E-05 4.3E-10 89.2 14.4 149 193-365 32-218 (309)
201 4h09_A Hypothetical leucine ri 98.2 7.3E-05 2.5E-09 85.6 21.3 127 722-853 213-341 (379)
202 2p65_A Hypothetical protein PF 98.2 9.9E-06 3.4E-10 82.3 12.4 50 190-241 20-69 (187)
203 2zan_A Vacuolar protein sortin 98.2 3.3E-05 1.1E-09 90.1 18.0 185 188-396 130-345 (444)
204 1io0_A Tropomodulin; LRR prote 98.1 1.2E-06 3.9E-11 89.4 3.2 59 821-879 92-162 (185)
205 3u61_B DNA polymerase accessor 98.1 2.7E-05 9.3E-10 87.1 14.2 180 188-393 22-213 (324)
206 3cf0_A Transitional endoplasmi 98.0 9.7E-05 3.3E-09 81.5 17.3 175 190-390 13-222 (301)
207 1in4_A RUVB, holliday junction 98.0 0.0002 6.9E-09 80.2 19.8 259 188-490 21-317 (334)
208 1io0_A Tropomodulin; LRR prote 97.9 3.3E-06 1.1E-10 86.0 2.9 87 771-858 62-164 (185)
209 4b4t_J 26S protease regulatory 97.9 6.4E-05 2.2E-09 84.5 13.1 171 190-388 146-353 (405)
210 1a5t_A Delta prime, HOLB; zinc 97.9 0.00014 4.9E-09 81.4 15.9 180 199-396 9-205 (334)
211 3hu3_A Transitional endoplasmi 97.9 9.2E-05 3.2E-09 86.9 14.7 180 191-395 203-414 (489)
212 1sxj_C Activator 1 40 kDa subu 97.8 0.00022 7.6E-09 80.2 16.5 183 188-392 21-208 (340)
213 3pxg_A Negative regulator of g 97.8 0.00014 4.7E-09 85.5 15.0 150 188-364 176-338 (468)
214 4b4t_H 26S protease regulatory 97.8 0.00019 6.4E-09 81.8 14.7 170 191-388 208-414 (467)
215 3n70_A Transport activator; si 97.8 3.4E-05 1.2E-09 74.9 7.6 47 193-239 2-48 (145)
216 3rw6_A Nuclear RNA export fact 97.8 5.9E-06 2E-10 88.5 2.2 13 846-858 221-233 (267)
217 1lv7_A FTSH; alpha/beta domain 97.8 0.00016 5.6E-09 77.7 13.0 182 188-394 8-223 (257)
218 4b4t_M 26S protease regulatory 97.7 6E-05 2E-09 86.1 9.8 172 189-388 178-386 (434)
219 2r62_A Cell division protease 97.7 2.9E-05 9.8E-10 84.3 6.9 154 189-364 8-196 (268)
220 4b4t_L 26S protease subunit RP 97.7 0.00012 4.2E-09 83.6 12.2 171 190-388 179-386 (437)
221 3ec2_A DNA replication protein 97.7 0.00011 3.9E-09 74.1 10.0 42 199-240 21-63 (180)
222 2w58_A DNAI, primosome compone 97.7 4.9E-05 1.7E-09 78.5 7.2 59 191-249 24-88 (202)
223 3rw6_A Nuclear RNA export fact 97.7 3.3E-05 1.1E-09 82.7 5.9 65 820-885 168-237 (267)
224 1ofh_A ATP-dependent HSL prote 97.7 0.00018 6.1E-09 79.7 11.9 48 193-240 16-75 (310)
225 4b4t_I 26S protease regulatory 97.7 0.00018 6.2E-09 81.0 11.8 172 189-388 179-387 (437)
226 3e4g_A ATP synthase subunit S, 97.6 1.9E-05 6.6E-10 78.2 2.2 87 845-932 61-156 (176)
227 4b4t_K 26S protease regulatory 97.6 0.00013 4.4E-09 83.3 9.3 171 190-388 170-378 (428)
228 2ce7_A Cell division protein F 97.6 0.0012 4.1E-08 76.8 17.3 174 190-389 14-221 (476)
229 3pxi_A Negative regulator of g 97.6 0.00055 1.9E-08 85.8 15.5 149 189-364 177-338 (758)
230 1qvr_A CLPB protein; coiled co 97.5 0.00022 7.7E-09 90.4 11.8 51 189-241 167-217 (854)
231 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00058 2E-08 85.7 15.5 156 189-364 183-362 (758)
232 3e4g_A ATP synthase subunit S, 97.5 7.8E-05 2.7E-09 73.9 5.0 83 798-882 62-153 (176)
233 4fcw_A Chaperone protein CLPB; 97.5 0.00036 1.2E-08 77.4 10.9 49 193-241 18-73 (311)
234 2gno_A DNA polymerase III, gam 97.4 0.00062 2.1E-08 74.7 11.7 146 196-364 1-152 (305)
235 1ixz_A ATP-dependent metallopr 97.3 0.0019 6.4E-08 69.2 13.7 153 189-364 13-199 (254)
236 3co5_A Putative two-component 97.3 9.2E-05 3.1E-09 71.6 2.9 47 193-239 5-51 (143)
237 2bjv_A PSP operon transcriptio 97.3 0.00031 1E-08 75.9 7.0 49 192-240 6-54 (265)
238 3t15_A Ribulose bisphosphate c 97.3 0.0031 1E-07 69.0 15.0 29 214-242 35-63 (293)
239 1ojl_A Transcriptional regulat 97.2 0.0005 1.7E-08 75.7 8.3 48 192-239 2-49 (304)
240 2kjq_A DNAA-related protein; s 97.2 0.0004 1.4E-08 67.5 6.2 28 214-241 35-62 (149)
241 2c9o_A RUVB-like 1; hexameric 97.2 0.0059 2E-07 71.3 17.3 51 190-240 35-88 (456)
242 1iy2_A ATP-dependent metallopr 97.2 0.0053 1.8E-07 66.6 15.7 175 189-389 37-245 (278)
243 3cf2_A TER ATPase, transitiona 97.1 0.0023 7.9E-08 78.7 12.6 171 191-389 203-407 (806)
244 3m6a_A ATP-dependent protease 97.1 0.0031 1.1E-07 75.3 13.3 158 193-364 82-266 (543)
245 2x8a_A Nuclear valosin-contain 97.0 0.0076 2.6E-07 65.0 14.9 124 218-364 47-191 (274)
246 3pxi_A Negative regulator of g 97.0 0.0022 7.5E-08 80.3 11.6 150 192-364 491-675 (758)
247 2dhr_A FTSH; AAA+ protein, hex 96.9 0.0035 1.2E-07 73.3 12.0 172 189-389 28-236 (499)
248 1ypw_A Transitional endoplasmi 96.9 0.0037 1.3E-07 78.2 12.7 152 190-364 202-385 (806)
249 1um8_A ATP-dependent CLP prote 96.8 0.0047 1.6E-07 70.3 11.4 25 216-240 73-97 (376)
250 1eiw_A Hypothetical protein MT 96.6 0.0014 4.8E-08 59.1 4.2 63 20-101 3-65 (111)
251 1r6b_X CLPA protein; AAA+, N-t 96.5 0.0041 1.4E-07 77.9 9.1 48 192-239 458-512 (758)
252 1pgv_A TMD-1, tropomodulin TMD 96.4 0.002 6.8E-08 65.0 4.1 13 841-853 122-134 (197)
253 1g5t_A COB(I)alamin adenosyltr 96.3 0.0072 2.5E-07 60.6 7.7 131 216-350 29-179 (196)
254 3bh0_A DNAB-like replicative h 96.2 0.013 4.5E-07 64.6 10.3 71 194-271 48-118 (315)
255 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.0078 2.7E-07 63.1 8.0 48 202-249 10-57 (235)
256 4a1f_A DNAB helicase, replicat 96.2 0.008 2.7E-07 66.4 8.2 72 194-272 26-97 (338)
257 2cvh_A DNA repair and recombin 96.2 0.0053 1.8E-07 63.8 6.4 46 202-250 7-52 (220)
258 2vhj_A Ntpase P4, P4; non- hyd 96.0 0.0052 1.8E-07 66.6 4.9 25 214-238 122-146 (331)
259 2qgz_A Helicase loader, putati 95.9 0.017 6E-07 63.3 9.1 49 201-249 137-187 (308)
260 3lw7_A Adenylate kinase relate 95.9 0.033 1.1E-06 55.2 10.4 22 216-238 2-23 (179)
261 1vma_A Cell division protein F 95.8 0.029 1E-06 61.2 10.3 45 198-242 81-131 (306)
262 3hr8_A Protein RECA; alpha and 95.8 0.032 1.1E-06 62.0 10.7 55 196-250 41-96 (356)
263 1qvr_A CLPB protein; coiled co 95.8 0.03 1E-06 70.9 11.6 50 192-241 558-614 (854)
264 1u0j_A DNA replication protein 95.7 0.037 1.3E-06 58.4 10.2 38 201-238 90-127 (267)
265 2r44_A Uncharacterized protein 95.7 0.0057 1.9E-07 68.2 4.1 48 191-242 26-73 (331)
266 1pgv_A TMD-1, tropomodulin TMD 95.7 0.0058 2E-07 61.6 3.6 38 820-857 124-169 (197)
267 3rfe_A Platelet glycoprotein I 95.7 0.014 4.7E-07 54.9 6.0 54 825-880 11-67 (130)
268 1ye8_A Protein THEP1, hypothet 95.5 0.085 2.9E-06 52.6 11.7 24 217-240 2-25 (178)
269 2b8t_A Thymidine kinase; deoxy 95.5 0.0081 2.8E-07 62.2 4.0 111 214-334 11-126 (223)
270 2px0_A Flagellar biosynthesis 95.4 0.09 3.1E-06 57.1 12.4 28 214-241 104-131 (296)
271 1jr3_D DNA polymerase III, del 95.4 0.15 5.1E-06 56.9 14.5 156 214-395 17-184 (343)
272 3bgw_A DNAB-like replicative h 95.4 0.043 1.5E-06 63.4 10.2 71 194-271 177-247 (444)
273 3cf2_A TER ATPase, transitiona 95.3 0.017 5.9E-07 71.0 6.7 150 192-364 477-661 (806)
274 1zu4_A FTSY; GTPase, signal re 95.3 0.052 1.8E-06 59.7 9.9 30 213-242 103-132 (320)
275 2q6t_A DNAB replication FORK h 95.2 0.094 3.2E-06 60.8 12.5 72 194-272 180-252 (444)
276 1xp8_A RECA protein, recombina 95.2 0.075 2.6E-06 59.5 11.2 57 194-250 52-109 (366)
277 2r6a_A DNAB helicase, replicat 95.2 0.054 1.8E-06 63.1 10.4 69 195-270 184-253 (454)
278 3dm5_A SRP54, signal recogniti 95.2 0.056 1.9E-06 61.7 9.9 29 214-242 99-127 (443)
279 1ypw_A Transitional endoplasmi 95.1 0.0085 2.9E-07 74.9 3.2 151 191-364 476-661 (806)
280 1j8m_F SRP54, signal recogniti 95.0 0.17 5.9E-06 54.9 12.8 35 215-249 98-132 (297)
281 2zr9_A Protein RECA, recombina 95.0 0.038 1.3E-06 61.7 7.7 56 195-250 40-96 (349)
282 4gp7_A Metallophosphoesterase; 94.9 0.0082 2.8E-07 59.7 2.0 21 215-235 9-29 (171)
283 3hyn_A Putative signal transdu 94.9 0.084 2.9E-06 51.0 8.8 103 23-130 7-133 (189)
284 3jvv_A Twitching mobility prot 94.9 0.026 8.9E-07 63.0 6.2 110 216-337 124-234 (356)
285 3c8u_A Fructokinase; YP_612366 94.9 0.023 7.7E-07 58.5 5.3 28 213-240 20-47 (208)
286 2ehv_A Hypothetical protein PH 94.9 0.051 1.7E-06 57.5 8.2 24 214-237 29-52 (251)
287 1qhx_A CPT, protein (chloramph 94.8 0.012 4.1E-07 58.8 2.9 25 216-240 4-28 (178)
288 3kl4_A SRP54, signal recogniti 94.8 0.19 6.6E-06 57.3 13.1 29 214-242 96-124 (433)
289 3hws_A ATP-dependent CLP prote 94.7 0.019 6.5E-07 64.8 4.6 47 194-240 17-76 (363)
290 2eyu_A Twitching motility prot 94.7 0.03 1E-06 59.7 5.9 112 214-336 24-135 (261)
291 1rz3_A Hypothetical protein rb 94.6 0.044 1.5E-06 56.0 6.4 43 198-240 4-47 (201)
292 3io5_A Recombination and repai 94.6 0.057 1.9E-06 58.3 7.4 49 201-250 11-65 (333)
293 3kb2_A SPBC2 prophage-derived 94.5 0.018 6E-07 57.1 3.3 25 216-240 2-26 (173)
294 3umf_A Adenylate kinase; rossm 94.5 0.07 2.4E-06 54.9 7.8 27 213-239 27-53 (217)
295 3sr0_A Adenylate kinase; phosp 94.5 0.12 4E-06 52.9 9.3 88 217-315 2-94 (206)
296 3e70_C DPA, signal recognition 94.4 0.097 3.3E-06 57.6 9.0 29 214-242 128-156 (328)
297 2orw_A Thymidine kinase; TMTK, 94.3 0.012 4E-07 59.3 1.3 25 216-240 4-28 (184)
298 1q57_A DNA primase/helicase; d 94.3 0.11 3.9E-06 61.2 10.1 63 203-272 231-294 (503)
299 3trf_A Shikimate kinase, SK; a 94.2 0.022 7.6E-07 57.2 3.3 25 215-239 5-29 (185)
300 3nbx_X ATPase RAVA; AAA+ ATPas 94.2 0.028 9.7E-07 65.7 4.5 43 193-239 23-65 (500)
301 3vaa_A Shikimate kinase, SK; s 94.2 0.023 8E-07 57.9 3.4 26 214-239 24-49 (199)
302 1zuh_A Shikimate kinase; alpha 94.1 0.025 8.7E-07 55.8 3.4 27 214-240 6-32 (168)
303 2ga8_A Hypothetical 39.9 kDa p 94.1 0.033 1.1E-06 61.3 4.4 31 213-243 22-52 (359)
304 4eun_A Thermoresistant glucoki 94.0 0.076 2.6E-06 54.1 6.8 26 214-239 28-53 (200)
305 3b9q_A Chloroplast SRP recepto 94.0 0.15 5.2E-06 55.4 9.5 28 214-241 99-126 (302)
306 1nlf_A Regulatory protein REPA 93.9 0.17 5.8E-06 54.5 9.8 28 214-241 29-56 (279)
307 3rfe_A Platelet glycoprotein I 93.8 0.08 2.8E-06 49.6 6.0 42 696-737 24-66 (130)
308 1nks_A Adenylate kinase; therm 93.8 0.051 1.8E-06 54.8 5.0 26 216-241 2-27 (194)
309 1rj9_A FTSY, signal recognitio 93.8 0.15 5.2E-06 55.5 9.0 35 214-249 101-135 (304)
310 1odf_A YGR205W, hypothetical 3 93.7 0.06 2.1E-06 58.3 5.7 30 212-241 28-57 (290)
311 1v5w_A DMC1, meiotic recombina 93.6 0.13 4.5E-06 57.2 8.4 51 200-250 107-163 (343)
312 2ewv_A Twitching motility prot 93.6 0.2 6.9E-06 56.3 9.9 111 214-335 135-245 (372)
313 1ly1_A Polynucleotide kinase; 93.5 0.038 1.3E-06 55.1 3.5 22 216-237 3-24 (181)
314 1kag_A SKI, shikimate kinase I 93.5 0.029 9.9E-07 55.6 2.5 25 216-240 5-29 (173)
315 2z43_A DNA repair and recombin 93.5 0.064 2.2E-06 59.3 5.5 50 201-250 93-148 (324)
316 3iij_A Coilin-interacting nucl 93.5 0.03 1E-06 56.0 2.6 25 215-239 11-35 (180)
317 2og2_A Putative signal recogni 93.5 0.21 7.3E-06 55.5 9.7 35 214-249 156-190 (359)
318 2xxa_A Signal recognition part 93.4 0.23 7.9E-06 56.9 10.2 43 200-242 78-127 (433)
319 2rhm_A Putative kinase; P-loop 93.4 0.048 1.6E-06 55.1 4.1 25 215-239 5-29 (193)
320 1via_A Shikimate kinase; struc 93.4 0.032 1.1E-06 55.5 2.7 24 217-240 6-29 (175)
321 3uie_A Adenylyl-sulfate kinase 93.3 0.071 2.4E-06 54.3 5.2 27 214-240 24-50 (200)
322 1kht_A Adenylate kinase; phosp 93.3 0.044 1.5E-06 55.2 3.7 26 216-241 4-29 (192)
323 1ex7_A Guanylate kinase; subst 93.3 0.031 1E-06 56.1 2.3 28 216-243 2-29 (186)
324 3tlx_A Adenylate kinase 2; str 93.3 0.051 1.8E-06 57.3 4.2 26 214-239 28-53 (243)
325 1g8p_A Magnesium-chelatase 38 93.3 0.033 1.1E-06 62.4 2.9 51 188-240 20-70 (350)
326 3geh_A MNME, tRNA modification 93.3 0.18 6E-06 58.5 8.9 22 217-238 226-247 (462)
327 1zp6_A Hypothetical protein AT 93.3 0.045 1.6E-06 55.2 3.6 25 214-238 8-32 (191)
328 2iyv_A Shikimate kinase, SK; t 93.2 0.035 1.2E-06 55.7 2.6 25 216-240 3-27 (184)
329 1kgd_A CASK, peripheral plasma 93.2 0.044 1.5E-06 54.8 3.3 26 215-240 5-30 (180)
330 2yhs_A FTSY, cell division pro 93.2 0.25 8.5E-06 56.9 9.8 35 214-249 292-326 (503)
331 3t61_A Gluconokinase; PSI-biol 93.1 0.039 1.3E-06 56.4 2.9 25 215-239 18-42 (202)
332 2yvu_A Probable adenylyl-sulfa 93.1 0.072 2.5E-06 53.5 4.8 28 214-241 12-39 (186)
333 1tue_A Replication protein E1; 93.1 0.067 2.3E-06 53.8 4.4 42 199-241 43-84 (212)
334 2pjz_A Hypothetical protein ST 93.1 0.27 9.1E-06 52.3 9.4 24 215-238 30-53 (263)
335 2jaq_A Deoxyguanosine kinase; 93.1 0.043 1.5E-06 56.0 3.1 24 217-240 2-25 (205)
336 1sky_E F1-ATPase, F1-ATP synth 93.1 0.15 5E-06 58.4 7.6 29 216-244 152-180 (473)
337 2c95_A Adenylate kinase 1; tra 93.0 0.051 1.7E-06 55.0 3.5 25 215-239 9-33 (196)
338 1xjc_A MOBB protein homolog; s 92.9 0.081 2.8E-06 51.9 4.6 29 214-242 3-31 (169)
339 2ze6_A Isopentenyl transferase 92.9 0.051 1.8E-06 57.7 3.5 25 216-240 2-26 (253)
340 2i1q_A DNA repair and recombin 92.9 0.15 5.1E-06 56.3 7.4 41 199-239 82-122 (322)
341 1y63_A LMAJ004144AAA protein; 92.9 0.058 2E-06 54.1 3.7 25 214-238 9-33 (184)
342 1e6c_A Shikimate kinase; phosp 92.9 0.043 1.5E-06 54.3 2.7 25 216-240 3-27 (173)
343 2bwj_A Adenylate kinase 5; pho 92.8 0.055 1.9E-06 54.9 3.5 25 216-240 13-37 (199)
344 1knq_A Gluconate kinase; ALFA/ 92.8 0.061 2.1E-06 53.4 3.7 25 215-239 8-32 (175)
345 1tev_A UMP-CMP kinase; ploop, 92.8 0.063 2.1E-06 54.2 3.8 24 216-239 4-27 (196)
346 1nn5_A Similar to deoxythymidy 92.7 0.093 3.2E-06 54.0 5.1 28 215-242 9-36 (215)
347 3cm0_A Adenylate kinase; ATP-b 92.7 0.06 2.1E-06 54.0 3.5 25 215-239 4-28 (186)
348 2dr3_A UPF0273 protein PH0284; 92.7 0.099 3.4E-06 55.0 5.4 46 204-249 12-57 (247)
349 2pt5_A Shikimate kinase, SK; a 92.7 0.059 2E-06 53.0 3.4 24 217-240 2-25 (168)
350 1u94_A RECA protein, recombina 92.6 0.2 6.7E-06 55.9 7.9 57 194-250 41-98 (356)
351 1g41_A Heat shock protein HSLU 92.6 0.081 2.8E-06 60.5 4.8 51 193-243 16-78 (444)
352 2vli_A Antibiotic resistance p 92.6 0.039 1.3E-06 55.2 2.0 25 216-240 6-30 (183)
353 3a00_A Guanylate kinase, GMP k 92.6 0.052 1.8E-06 54.6 2.8 28 216-243 2-29 (186)
354 3ice_A Transcription terminati 92.6 0.16 5.6E-06 56.2 6.8 31 214-244 173-203 (422)
355 1qf9_A UMP/CMP kinase, protein 92.5 0.074 2.5E-06 53.6 3.9 25 215-239 6-30 (194)
356 1ukz_A Uridylate kinase; trans 92.5 0.071 2.4E-06 54.4 3.8 27 213-239 13-39 (203)
357 3tau_A Guanylate kinase, GMP k 92.5 0.055 1.9E-06 55.5 2.9 28 214-241 7-34 (208)
358 2wwf_A Thymidilate kinase, put 92.4 0.076 2.6E-06 54.5 3.9 28 215-242 10-37 (212)
359 2plr_A DTMP kinase, probable t 92.4 0.072 2.5E-06 54.6 3.8 27 216-242 5-31 (213)
360 2cdn_A Adenylate kinase; phosp 92.4 0.082 2.8E-06 53.8 4.1 25 215-239 20-44 (201)
361 2qor_A Guanylate kinase; phosp 92.3 0.056 1.9E-06 55.3 2.7 27 214-240 11-37 (204)
362 1tf7_A KAIC; homohexamer, hexa 92.3 0.37 1.3E-05 57.1 10.1 41 202-242 268-308 (525)
363 1aky_A Adenylate kinase; ATP:A 92.3 0.068 2.3E-06 55.4 3.3 26 215-240 4-29 (220)
364 2pbr_A DTMP kinase, thymidylat 92.2 0.076 2.6E-06 53.6 3.5 25 217-241 2-26 (195)
365 1uj2_A Uridine-cytidine kinase 92.2 0.077 2.6E-06 56.3 3.7 28 213-240 20-47 (252)
366 2if2_A Dephospho-COA kinase; a 92.1 0.075 2.6E-06 54.3 3.4 22 216-237 2-23 (204)
367 2bdt_A BH3686; alpha-beta prot 92.1 0.077 2.6E-06 53.4 3.5 22 216-237 3-24 (189)
368 2j37_W Signal recognition part 92.1 0.33 1.1E-05 56.6 9.1 29 214-242 100-128 (504)
369 1cke_A CK, MSSA, protein (cyti 92.1 0.08 2.7E-06 55.0 3.6 24 216-239 6-29 (227)
370 1uf9_A TT1252 protein; P-loop, 92.0 0.09 3.1E-06 53.5 3.9 26 213-238 6-31 (203)
371 3a4m_A L-seryl-tRNA(SEC) kinas 92.0 0.091 3.1E-06 56.0 4.0 26 215-240 4-29 (260)
372 2v3c_C SRP54, signal recogniti 92.0 0.3 1E-05 56.0 8.5 28 215-242 99-126 (432)
373 3fwy_A Light-independent proto 92.0 0.13 4.4E-06 56.4 5.2 37 213-249 46-82 (314)
374 2grj_A Dephospho-COA kinase; T 92.0 0.082 2.8E-06 53.3 3.4 26 214-239 11-36 (192)
375 3ney_A 55 kDa erythrocyte memb 91.9 0.078 2.7E-06 53.5 3.1 27 214-240 18-44 (197)
376 2qt1_A Nicotinamide riboside k 91.8 0.1 3.6E-06 53.3 4.0 26 213-238 19-44 (207)
377 3p32_A Probable GTPase RV1496/ 91.8 0.2 6.9E-06 56.1 6.6 40 203-242 67-106 (355)
378 2pez_A Bifunctional 3'-phospho 91.8 0.11 3.6E-06 51.9 3.9 27 215-241 5-31 (179)
379 2r2a_A Uncharacterized protein 91.7 0.24 8.3E-06 50.1 6.6 22 217-238 7-28 (199)
380 3fb4_A Adenylate kinase; psych 91.7 0.093 3.2E-06 54.1 3.6 23 217-239 2-24 (216)
381 2pt7_A CAG-ALFA; ATPase, prote 91.7 0.15 5.2E-06 56.3 5.4 105 216-335 172-276 (330)
382 3asz_A Uridine kinase; cytidin 91.6 0.12 4E-06 53.1 4.2 27 214-240 5-31 (211)
383 3tr0_A Guanylate kinase, GMP k 91.6 0.097 3.3E-06 53.4 3.5 25 215-239 7-31 (205)
384 1zd8_A GTP:AMP phosphotransfer 91.6 0.091 3.1E-06 54.7 3.3 25 215-239 7-31 (227)
385 2j41_A Guanylate kinase; GMP, 91.6 0.097 3.3E-06 53.4 3.5 25 215-239 6-30 (207)
386 1jjv_A Dephospho-COA kinase; P 91.5 0.092 3.2E-06 53.7 3.3 22 216-237 3-24 (206)
387 2bbw_A Adenylate kinase 4, AK4 91.5 0.099 3.4E-06 55.2 3.6 26 215-240 27-52 (246)
388 3nwj_A ATSK2; P loop, shikimat 91.5 0.079 2.7E-06 55.9 2.7 25 216-240 49-73 (250)
389 1gvn_B Zeta; postsegregational 91.4 0.14 4.8E-06 55.4 4.7 26 214-239 32-57 (287)
390 1cr0_A DNA primase/helicase; R 91.4 0.27 9.3E-06 53.4 7.1 37 213-249 33-70 (296)
391 2z0h_A DTMP kinase, thymidylat 91.4 0.11 3.6E-06 52.7 3.6 25 217-241 2-26 (197)
392 3tqc_A Pantothenate kinase; bi 91.4 0.15 5.1E-06 55.8 4.9 47 194-240 69-117 (321)
393 1gtv_A TMK, thymidylate kinase 91.4 0.077 2.6E-06 54.5 2.6 25 217-241 2-26 (214)
394 1zak_A Adenylate kinase; ATP:A 91.4 0.088 3E-06 54.6 3.0 25 216-240 6-30 (222)
395 4a74_A DNA repair and recombin 91.3 0.11 3.8E-06 54.0 3.7 38 202-239 12-49 (231)
396 3dl0_A Adenylate kinase; phosp 91.3 0.098 3.3E-06 53.9 3.2 23 217-239 2-24 (216)
397 3k1j_A LON protease, ATP-depen 91.3 0.09 3.1E-06 63.6 3.3 51 188-242 37-87 (604)
398 1n0w_A DNA repair protein RAD5 91.1 0.15 5E-06 53.5 4.5 50 201-250 10-65 (243)
399 3be4_A Adenylate kinase; malar 91.1 0.11 3.9E-06 53.6 3.5 24 216-239 6-29 (217)
400 4e22_A Cytidylate kinase; P-lo 90.9 0.11 3.7E-06 55.1 3.1 27 214-240 26-52 (252)
401 1m7g_A Adenylylsulfate kinase; 90.9 0.14 4.8E-06 52.6 3.9 26 215-240 25-50 (211)
402 3ake_A Cytidylate kinase; CMP 90.8 0.13 4.4E-06 52.5 3.5 24 217-240 4-27 (208)
403 1e4v_A Adenylate kinase; trans 90.6 0.15 5E-06 52.6 3.7 23 217-239 2-24 (214)
404 1lvg_A Guanylate kinase, GMP k 90.5 0.12 4.2E-06 52.4 3.0 25 216-240 5-29 (198)
405 1ak2_A Adenylate kinase isoenz 90.5 0.13 4.5E-06 53.7 3.3 25 216-240 17-41 (233)
406 1puj_A YLQF, conserved hypothe 90.4 1.1 3.9E-05 48.0 10.7 49 64-118 13-61 (282)
407 2v54_A DTMP kinase, thymidylat 90.4 0.13 4.6E-06 52.2 3.2 24 216-239 5-28 (204)
408 2jeo_A Uridine-cytidine kinase 90.4 0.17 5.7E-06 53.4 4.0 26 214-239 24-49 (245)
409 3d3q_A TRNA delta(2)-isopenten 90.3 0.15 5E-06 56.1 3.5 25 216-240 8-32 (340)
410 2xb4_A Adenylate kinase; ATP-b 90.3 0.15 5.2E-06 52.9 3.6 23 217-239 2-24 (223)
411 3r20_A Cytidylate kinase; stru 90.3 0.14 4.9E-06 53.1 3.3 25 216-240 10-34 (233)
412 3gee_A MNME, tRNA modification 90.3 0.35 1.2E-05 56.2 7.0 20 218-237 236-255 (476)
413 2f6r_A COA synthase, bifunctio 90.3 0.16 5.5E-06 54.8 3.8 24 214-237 74-97 (281)
414 3cmw_A Protein RECA, recombina 90.3 0.44 1.5E-05 63.2 8.6 97 201-306 1416-1519(1706)
415 2hf9_A Probable hydrogenase ni 90.3 0.24 8.3E-06 51.2 5.2 29 214-242 37-65 (226)
416 3cmu_A Protein RECA, recombina 90.2 0.39 1.3E-05 64.5 8.0 49 201-249 1412-1461(2050)
417 2wsm_A Hydrogenase expression/ 90.2 0.2 6.9E-06 51.6 4.4 42 199-242 16-57 (221)
418 3aez_A Pantothenate kinase; tr 90.1 0.18 6.3E-06 55.1 4.2 29 213-241 88-116 (312)
419 2zts_A Putative uncharacterize 90.1 0.17 5.7E-06 53.4 3.7 37 213-249 28-65 (251)
420 2p5t_B PEZT; postsegregational 90.1 0.13 4.5E-06 54.5 2.9 27 214-240 31-57 (253)
421 3e1s_A Exodeoxyribonuclease V, 90.0 0.62 2.1E-05 55.6 8.9 28 216-243 205-232 (574)
422 3cmw_A Protein RECA, recombina 89.9 0.36 1.2E-05 64.0 7.3 56 194-249 710-766 (1706)
423 1np6_A Molybdopterin-guanine d 89.8 0.19 6.6E-06 49.6 3.7 27 215-241 6-32 (174)
424 1vht_A Dephospho-COA kinase; s 89.8 0.18 6.3E-06 51.9 3.7 23 215-237 4-26 (218)
425 3l0o_A Transcription terminati 89.8 0.45 1.5E-05 52.6 6.8 30 214-243 174-203 (427)
426 3crm_A TRNA delta(2)-isopenten 89.6 0.17 5.9E-06 55.1 3.4 24 216-239 6-29 (323)
427 2f1r_A Molybdopterin-guanine d 89.6 0.17 5.7E-06 50.0 3.0 27 216-242 3-29 (171)
428 1znw_A Guanylate kinase, GMP k 89.5 0.17 6E-06 51.6 3.2 26 214-239 19-44 (207)
429 3j16_B RLI1P; ribosome recycli 89.4 0.84 2.9E-05 54.6 9.4 59 288-349 231-295 (608)
430 1a7j_A Phosphoribulokinase; tr 89.2 0.12 4.1E-06 56.0 1.8 27 214-240 4-30 (290)
431 2p67_A LAO/AO transport system 89.2 0.29 9.9E-06 54.4 5.0 29 213-241 54-82 (341)
432 1htw_A HI0065; nucleotide-bind 89.2 0.23 7.7E-06 48.3 3.6 27 213-239 31-57 (158)
433 1g8f_A Sulfate adenylyltransfe 89.1 0.24 8.3E-06 57.7 4.4 46 196-241 376-421 (511)
434 1z6g_A Guanylate kinase; struc 89.1 0.16 5.5E-06 52.4 2.6 25 215-239 23-47 (218)
435 1svm_A Large T antigen; AAA+ f 89.1 0.26 8.8E-06 55.3 4.4 28 212-239 166-193 (377)
436 2i3b_A HCR-ntpase, human cance 89.1 0.19 6.6E-06 50.4 3.1 24 217-240 3-26 (189)
437 1q3t_A Cytidylate kinase; nucl 89.0 0.24 8.1E-06 51.9 3.9 27 213-239 14-40 (236)
438 2r8r_A Sensor protein; KDPD, P 89.0 0.33 1.1E-05 49.8 4.7 27 216-242 7-33 (228)
439 3a8t_A Adenylate isopentenyltr 88.9 0.14 4.7E-06 56.1 1.9 25 215-239 40-64 (339)
440 3j16_B RLI1P; ribosome recycli 88.9 0.42 1.4E-05 57.2 6.3 75 40-115 201-279 (608)
441 1s96_A Guanylate kinase, GMP k 88.8 0.21 7.2E-06 51.5 3.2 27 214-240 15-41 (219)
442 2ck3_D ATP synthase subunit be 88.7 0.94 3.2E-05 51.7 8.7 47 201-249 141-188 (482)
443 3bk7_A ABC transporter ATP-bin 88.7 0.72 2.5E-05 55.3 8.2 133 215-349 382-546 (607)
444 3end_A Light-independent proto 88.6 0.35 1.2E-05 52.8 5.1 37 213-249 39-75 (307)
445 3ozx_A RNAse L inhibitor; ATP 88.6 0.46 1.6E-05 56.1 6.3 24 214-237 24-47 (538)
446 3exa_A TRNA delta(2)-isopenten 88.5 0.21 7.1E-06 53.9 3.0 24 216-239 4-27 (322)
447 1yrb_A ATP(GTP)binding protein 88.5 0.37 1.3E-05 51.2 5.1 27 214-240 13-39 (262)
448 1sq5_A Pantothenate kinase; P- 88.5 0.28 9.6E-06 53.6 4.2 28 213-240 78-105 (308)
449 3hjn_A DTMP kinase, thymidylat 88.5 0.27 9.3E-06 49.7 3.8 33 217-249 2-34 (197)
450 1cp2_A CP2, nitrogenase iron p 88.5 0.39 1.3E-05 51.2 5.2 34 216-249 2-35 (269)
451 3cnl_A YLQF, putative uncharac 88.3 0.59 2E-05 49.6 6.4 47 64-118 11-57 (262)
452 1ltq_A Polynucleotide kinase; 88.3 0.24 8.3E-06 53.9 3.5 23 216-238 3-25 (301)
453 3zvl_A Bifunctional polynucleo 88.3 0.82 2.8E-05 52.2 8.0 27 213-239 256-282 (416)
454 3foz_A TRNA delta(2)-isopenten 88.2 0.25 8.7E-06 53.2 3.4 25 215-239 10-34 (316)
455 3lnc_A Guanylate kinase, GMP k 88.1 0.17 5.7E-06 52.8 1.9 25 215-239 27-52 (231)
456 3cmu_A Protein RECA, recombina 88.1 0.7 2.4E-05 62.2 8.1 58 193-250 360-418 (2050)
457 1ls1_A Signal recognition part 88.1 0.42 1.5E-05 51.8 5.2 29 214-242 97-125 (295)
458 4eaq_A DTMP kinase, thymidylat 87.8 0.33 1.1E-05 50.4 4.0 28 214-241 25-52 (229)
459 1pzn_A RAD51, DNA repair and r 87.6 0.33 1.1E-05 54.0 4.1 38 202-239 118-155 (349)
460 3fdi_A Uncharacterized protein 87.5 0.31 1E-05 49.5 3.4 26 215-240 6-31 (201)
461 2qmh_A HPR kinase/phosphorylas 87.4 0.22 7.5E-06 49.8 2.2 24 216-239 35-58 (205)
462 3cr8_A Sulfate adenylyltranfer 87.4 0.43 1.5E-05 56.3 5.1 28 214-241 368-395 (552)
463 2afh_E Nitrogenase iron protei 87.4 0.48 1.6E-05 51.2 5.1 27 216-242 3-29 (289)
464 2onk_A Molybdate/tungstate ABC 87.3 0.3 1E-05 51.1 3.3 24 213-237 23-46 (240)
465 1fx0_B ATP synthase beta chain 87.3 0.78 2.7E-05 52.6 6.9 35 215-249 165-200 (498)
466 2j9r_A Thymidine kinase; TK1, 87.3 0.89 3E-05 46.1 6.6 110 214-334 27-138 (214)
467 1oix_A RAS-related protein RAB 87.1 0.34 1.2E-05 48.7 3.4 24 215-238 29-52 (191)
468 3eph_A TRNA isopentenyltransfe 87.1 0.37 1.3E-05 54.0 4.0 25 216-240 3-27 (409)
469 2ocp_A DGK, deoxyguanosine kin 87.0 0.36 1.2E-05 50.6 3.7 25 216-240 3-27 (241)
470 3b5x_A Lipid A export ATP-bind 86.8 1.3 4.3E-05 53.2 8.8 24 214-237 368-391 (582)
471 3gmt_A Adenylate kinase; ssgci 86.8 0.35 1.2E-05 49.9 3.3 90 216-315 9-105 (230)
472 4edh_A DTMP kinase, thymidylat 86.7 0.67 2.3E-05 47.4 5.5 28 215-242 6-33 (213)
473 2dyk_A GTP-binding protein; GT 86.6 0.38 1.3E-05 46.3 3.5 22 216-237 2-23 (161)
474 2pcj_A ABC transporter, lipopr 86.5 0.3 1E-05 50.6 2.7 23 215-237 30-52 (224)
475 2qm8_A GTPase/ATPase; G protei 86.5 0.75 2.6E-05 50.8 6.1 29 213-241 53-81 (337)
476 2axn_A 6-phosphofructo-2-kinas 86.4 0.56 1.9E-05 55.2 5.3 30 214-243 34-63 (520)
477 2wji_A Ferrous iron transport 86.4 0.41 1.4E-05 46.6 3.5 22 216-237 4-25 (165)
478 2ged_A SR-beta, signal recogni 86.3 0.57 1.9E-05 46.8 4.6 24 214-237 47-70 (193)
479 3b85_A Phosphate starvation-in 86.2 0.26 9.1E-06 50.3 2.1 23 216-238 23-45 (208)
480 3tif_A Uncharacterized ABC tra 86.0 0.31 1.1E-05 50.8 2.6 24 214-237 30-53 (235)
481 4hlc_A DTMP kinase, thymidylat 85.8 0.6 2.1E-05 47.5 4.5 29 216-244 3-31 (205)
482 2f9l_A RAB11B, member RAS onco 85.7 0.38 1.3E-05 48.6 3.0 24 215-238 5-28 (199)
483 3lda_A DNA repair protein RAD5 85.7 0.38 1.3E-05 54.4 3.3 41 198-238 161-201 (400)
484 2h92_A Cytidylate kinase; ross 85.6 0.34 1.1E-05 49.9 2.5 24 216-239 4-27 (219)
485 3f9v_A Minichromosome maintena 85.5 0.26 8.8E-06 59.2 1.8 48 192-239 295-351 (595)
486 4dzz_A Plasmid partitioning pr 85.5 0.61 2.1E-05 47.2 4.5 34 216-249 2-36 (206)
487 2gks_A Bifunctional SAT/APS ki 85.4 0.83 2.8E-05 54.0 6.1 47 195-241 352-398 (546)
488 2cbz_A Multidrug resistance-as 85.4 0.37 1.3E-05 50.4 2.7 25 214-238 30-54 (237)
489 2ce2_X GTPase HRAS; signaling 85.3 0.45 1.5E-05 45.9 3.2 21 217-237 5-25 (166)
490 3vkw_A Replicase large subunit 85.3 2 6.9E-05 48.7 8.9 25 213-237 159-183 (446)
491 2d2e_A SUFC protein; ABC-ATPas 85.3 0.41 1.4E-05 50.5 3.1 23 215-237 29-51 (250)
492 1m8p_A Sulfate adenylyltransfe 85.3 0.74 2.5E-05 54.7 5.6 28 214-241 395-422 (573)
493 3gfo_A Cobalt import ATP-bindi 85.2 0.36 1.2E-05 51.7 2.6 23 215-237 34-56 (275)
494 1b0u_A Histidine permease; ABC 85.1 0.37 1.3E-05 51.2 2.6 24 214-237 31-54 (262)
495 2zej_A Dardarin, leucine-rich 85.1 0.39 1.3E-05 47.8 2.6 21 217-237 4-24 (184)
496 2zu0_C Probable ATP-dependent 85.0 0.43 1.5E-05 50.9 3.1 25 214-238 45-69 (267)
497 2v9p_A Replication protein E1; 84.9 0.6 2.1E-05 50.5 4.2 27 213-239 124-150 (305)
498 1ji0_A ABC transporter; ATP bi 84.9 0.38 1.3E-05 50.4 2.6 23 215-237 32-54 (240)
499 1sgw_A Putative ABC transporte 84.8 0.33 1.1E-05 49.8 2.0 23 215-237 35-57 (214)
500 4g1u_C Hemin import ATP-bindin 84.8 0.38 1.3E-05 51.2 2.6 24 214-237 36-59 (266)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=5.6e-49 Score=392.83 Aligned_cols=173 Identities=41% Similarity=0.723 Sum_probs=160.1
Q ss_pred CCCCCCCCCccEEEcccccccccchHHHHHHHHhhCCCceEecC-CCCCCCcchHHHHHHHHhcccEEEEecCCcccchh
Q 001161 13 GSLTNPEVQYDVFLSFRGEDTRENFTSHLYSALSRESIETFIDD-DLRRGDEISQSLLDAIEASSISIIVFSERYASSRW 91 (1134)
Q Consensus 13 ~~~~~~~~~~dvFis~~~~D~r~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~w 91 (1134)
+|++.+.++|||||||||+|+|++|++||+++|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|||+||++|+|
T Consensus 27 ~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~W 106 (204)
T 3ozi_A 27 PSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKW 106 (204)
T ss_dssp -------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHH
T ss_pred CcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcH
Confidence 44667889999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhc-cCcEEEeEEeeecccccccccccchhhHHhhcccCh-hhHHHHHHHHHHhcccccccccCCchhH
Q 001161 92 CLDELLKILECKKE-YAQIVIPACYRVDPSHVRKQTGNFGDSFLKLGERFP-DKMQSWRNALTEAADLSGFDSRVYRTES 169 (1134)
Q Consensus 92 c~~El~~~~~~~~~-~~~~v~pvf~~v~p~~vr~q~g~~~~~~~~~~~~~~-~~~~~w~~al~~~~~~~g~~~~~~~~e~ 169 (1134)
|++||++|++|.++ ++++||||||+|+|++||+|+|.||++|++|++++. +++++||.||++||+++||++.+...|+
T Consensus 107 Cl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~~~~e~ 186 (204)
T 3ozi_A 107 CLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDKQG 186 (204)
T ss_dssp HHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECTTSCHH
T ss_pred HHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCCCCCHH
Confidence 99999999999875 578999999999999999999999999999998865 7899999999999999999999888999
Q ss_pred HHHHHHHHHHHhhccc
Q 001161 170 ALIEEIVNAILKRVDD 185 (1134)
Q Consensus 170 ~~i~~i~~~v~~~l~~ 185 (1134)
++|++||++|+++++.
T Consensus 187 ~~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 187 AIADKVSADIWSHISK 202 (204)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999999864
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=7.4e-48 Score=379.84 Aligned_cols=170 Identities=45% Similarity=0.723 Sum_probs=144.5
Q ss_pred CCCCCccEEEcccccccccchHHHHHHHHhhCCCceEecC-CCCCCCcchHHHHHHHHhcccEEEEecCCcccchhhHHH
Q 001161 17 NPEVQYDVFLSFRGEDTRENFTSHLYSALSRESIETFIDD-DLRRGDEISQSLLDAIEASSISIIVFSERYASSRWCLDE 95 (1134)
Q Consensus 17 ~~~~~~dvFis~~~~D~r~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~~E 95 (1134)
+.+++|||||||||+|+|++|++||+++|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|||+||++|+||++|
T Consensus 4 s~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~E 83 (176)
T 3jrn_A 4 HTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDE 83 (176)
T ss_dssp ---CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHH
T ss_pred CCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHH
Confidence 4789999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCcEEEeEEeeecccccccccccchhhHHhhccc-ChhhHHHHHHHHHHhcccccccccCCchhHHHHHH
Q 001161 96 LLKILECKKEYAQIVIPACYRVDPSHVRKQTGNFGDSFLKLGER-FPDKMQSWRNALTEAADLSGFDSRVYRTESALIEE 174 (1134)
Q Consensus 96 l~~~~~~~~~~~~~v~pvf~~v~p~~vr~q~g~~~~~~~~~~~~-~~~~~~~w~~al~~~~~~~g~~~~~~~~e~~~i~~ 174 (1134)
|++|++|.+.++++|+||||+|+|++||+|+|+||++|++|+++ ..+++++||+||+++|+++||++. ++|+++|++
T Consensus 84 L~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~--~~e~~~i~~ 161 (176)
T 3jrn_A 84 LVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG--DDDSKLVDK 161 (176)
T ss_dssp HHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECC--SCHHHHHHH
T ss_pred HHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecC--CCHHHHHHH
Confidence 99999999989999999999999999999999999999999986 448999999999999999999984 679999999
Q ss_pred HHHHHHhhccccCC
Q 001161 175 IVNAILKRVDDTFQ 188 (1134)
Q Consensus 175 i~~~v~~~l~~~~~ 188 (1134)
||++|+++|++++|
T Consensus 162 Iv~~v~~~l~~~~~ 175 (176)
T 3jrn_A 162 IANEISNKKTIYAT 175 (176)
T ss_dssp HHHHHHTTCC----
T ss_pred HHHHHHHHhcCCCC
Confidence 99999999987765
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.1e-39 Score=395.75 Aligned_cols=300 Identities=16% Similarity=0.141 Sum_probs=239.4
Q ss_pred cccchhHHHHHHhhccC-CCCeeEEEEEecCCChHHHHHHHHHH----HHhccCCceeeeeechhHhhcCCHHHHHHHHH
Q 001161 195 VGVRLPMKEIESLLRTG-STNVYKLGIWGIGGIGKTTIAGAIFS----KISRHFAGSFFARNVREAEETGRLGDLRQQLL 269 (1134)
Q Consensus 195 vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll 269 (1134)
|||+.++++|.++|..+ ..++++|+|+||||+||||||+++|+ +++.+|++++|+ +++.... ++...++++++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv-~vs~~~~-~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWL-KDSGTAP-KSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEE-ECCCCST-THHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEE-EECCCCC-CCHHHHHHHHH
Confidence 59999999999999764 34689999999999999999999996 688999999999 3332221 46788999999
Q ss_pred HHHhcCCC--CCCC-----ccccHHHHHHhhcCC-cceEEEecCCChHHHHHHhcCcCCCCCCcEEEEEeCChhhhhhcC
Q 001161 270 STLLNDGN--VKNF-----PNIDLNFQSKKLTRK-KVLIVFDDVNHPRQIKILVGRLDLLASGSRIIITTRDRQVLANCG 341 (1134)
Q Consensus 270 ~~l~~~~~--~~~~-----~~~~~~~l~~~L~~k-~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~~ 341 (1134)
.++..... ...+ .+.....+++.|+++ |+||||||||+.+++ .+.. .+||+||||||++.++..++
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCC
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcC
Confidence 98876532 1122 223478889999996 999999999999876 3322 27999999999999988775
Q ss_pred -CCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHhcCCCHHHHHHHHHH-HHcCCC
Q 001161 342 -VDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLGRYLYGKRREVWENAISK-WETAPP 419 (1134)
Q Consensus 342 -~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~-l~~~~~ 419 (1134)
...+|+|++|+.+||++||.+++|.... .+...+++++|+++|+|+||||+++|+.|+.+.. +|...+.. +...+.
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~~ 360 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGL 360 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcccH
Confidence 4468999999999999999999986543 3677889999999999999999999999987743 33333332 333356
Q ss_pred CchhhhhhhhhcCCCHHHHHHHH-----------hhhcccCCCCHHHHHHHhhhC--CCchh-----------cchHHhh
Q 001161 420 KGIQDALKISYDGLDDKEQNVFL-----------DIACFFIDDDRDTVTKFLDDC--EFFAT-----------SGIEVLV 475 (1134)
Q Consensus 420 ~~i~~~l~~sy~~L~~~~k~~fl-----------~~a~f~~~~~~~~l~~~~~~~--~~~~~-----------~~i~~L~ 475 (1134)
..+..++++||+.||++.|.||+ ++|+||+++.++ ..+|.+. |+... .+++.|+
T Consensus 361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~ 438 (549)
T 2a5y_B 361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLS 438 (549)
T ss_dssp STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTT
T ss_pred HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999999 999999999887 5677776 55422 2689999
Q ss_pred ccCCeeEec---CCeEEEChhHHHHHHHHhhccC
Q 001161 476 DKHLITISV---RNKIKMHDLLRAMGREIVRQES 506 (1134)
Q Consensus 476 ~~sLi~~~~---~~~~~mHdlv~~~~~~i~~~e~ 506 (1134)
++||++... ..+|+|||++|+||++++.+++
T Consensus 439 ~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 439 KRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 999999864 2479999999999999887664
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.8e-39 Score=405.51 Aligned_cols=433 Identities=19% Similarity=0.228 Sum_probs=332.6
Q ss_pred ccccCcccccccCccccccCCCccEEEEecCCcccCcceeeccCCCC-cCeeEEEeecCCCCCCCCCCCCcccceEeeCC
Q 001161 539 LLDMSKVKDINLHPNVFAKMPNLRILKFYNSMDEENKCKVSHFQGSE-FTEVRYLHWHGYPLKSLPSNIHPEKLVLLEMP 617 (1134)
Q Consensus 539 ~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~ 617 (1134)
.+|++.+......+. |.++++|++|++++|.. ....+..+. +++|++|++++|.+....+...+++|++|+++
T Consensus 204 ~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l-----~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~ 277 (768)
T 3rgz_A 204 FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL-----SGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA 277 (768)
T ss_dssp EEECCSSCCCSCCCB-CTTCCSCCEEECCSSCC-----CSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECC
T ss_pred EEECcCCcCCCCCcc-cccCCCCCEEECcCCcC-----CCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECc
Confidence 356666655444444 78888888888877642 112232333 37888888888887743333478888888888
Q ss_pred CCCcc-ccchhhhcc-ccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCc-c-CcCcccEEEecCCCC
Q 001161 618 YSNIE-QLFDIVQNH-GKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDR-I-HLELLKELNLSGCSK 693 (1134)
Q Consensus 618 ~n~i~-~l~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-~-~l~~L~~L~Ls~~~~ 693 (1134)
+|.++ .+|..+... ++|+.|++++|...... +..++.+++|++|+|++|.+.+.+|.. + ++++|++|++++|..
T Consensus 278 ~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV--PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp SSEEEESCCCCSCTTCTTCSEEECCSSEEEECC--CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CCccCCccCHHHHhhcCcCCEEECcCCcCCCcc--chHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 88887 566666654 88888888887654443 557888888888888888887777765 3 688888888888876
Q ss_pred CCCcccccC--C-CcceeEecCcCcc-ccCccccC--CCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCC
Q 001161 694 LKRLPEISS--G-NIETMHLDGTALE-ELPSSIEC--LSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLP 767 (1134)
Q Consensus 694 l~~~~~~~~--~-~L~~L~L~~n~i~-~lp~~~~~--l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p 767 (1134)
...+|.... . +|+.|++++|.+. .+|..+.. +++|+.|++++|.+.+.+|..+.++++|++|++++|.+.+.+|
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 435 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc
Confidence 656665544 3 8888888888887 56666665 7889999999988888888888889999999999988888888
Q ss_pred ccccCCCCCcEEEccCCcCc-ccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCC-CCcccccccc
Q 001161 768 EELGYLEALDSLHAVGTAIR-ELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGIT-ELPESLGLLS 845 (1134)
Q Consensus 768 ~~~~~l~~L~~L~L~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~ 845 (1134)
..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|. +.+..+..+.++++|+.|+|++|+++ .+|.+++.++
T Consensus 436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND-LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc-ccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence 88888999999999999888 778888888999999999887 66667777888899999999999888 6788888899
Q ss_pred CcceeecCCCCcc-ccccchhCCCCCcEEEeccccCCCccCCc-------------------------------------
Q 001161 846 LVTELHLEGNNFE-RIPESIIQLSNLEWLFIRYCERLQSLPKL------------------------------------- 887 (1134)
Q Consensus 846 ~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~~l~~lp~~------------------------------------- 887 (1134)
+|++|+|++|+++ .+|..+.++++|+.|+|++|++.+.+|..
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence 9999999999888 78888888999999999998887766631
Q ss_pred ------------------------------------CCCcCeEeccCCcccccccCCCCCCCCccceeeeccCCCCCCcc
Q 001161 888 ------------------------------------PCNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDNFKLDPN 931 (1134)
Q Consensus 888 ------------------------------------~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~ 931 (1134)
.++|+.|++++|.....+|..+ ..+++|+.|+|++|
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l--~~l~~L~~L~Ls~N------ 666 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI--GSMPYLFILNLGHN------ 666 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG--GGCTTCCEEECCSS------
T ss_pred ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH--hccccCCEEeCcCC------
Confidence 1357778888876655555433 46777888888777
Q ss_pred ccccchHHHHHHhHHHHHHhHHhhhhcCCCCCCCceEEecCCCCCccccccCCCceEEEEcCCC
Q 001161 932 DLGGIVKGALQKIQLLATARLKEAREKISYPSREGRGFLPWNEIPKWFSFQSAGSCVTLEMPPD 995 (1134)
Q Consensus 932 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~pg~~iP~~~~~~~~g~~~~~~lp~~ 995 (1134)
.+++.+|..+.++++|+.|+|++|+++|.+|.... .++..-.....+|.+++.+|..
T Consensus 667 ~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~-------~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS-------ALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG-------GCCCCSEEECCSSEEEEECCSS
T ss_pred ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh-------CCCCCCEEECcCCcccccCCCc
Confidence 78888888888888888888888888887775543 3444444566788899988874
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.5e-38 Score=398.21 Aligned_cols=410 Identities=21% Similarity=0.236 Sum_probs=355.2
Q ss_pred ccccCcccccccCccccccCCCccEEEEecCCcccCcceeeccCCCCcCeeEEEeecCCCCC-CCCCCCC--cccceEee
Q 001161 539 LLDMSKVKDINLHPNVFAKMPNLRILKFYNSMDEENKCKVSHFQGSEFTEVRYLHWHGYPLK-SLPSNIH--PEKLVLLE 615 (1134)
Q Consensus 539 ~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~lp~~~~--l~~L~~L~ 615 (1134)
.++++++......+..|.++++|+.|++++|.. ....+ ...+++|++|++++|.++ .+|..+. +++|++|+
T Consensus 227 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l-----~~~~~-~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~ 300 (768)
T 3rgz_A 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQF-----VGPIP-PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300 (768)
T ss_dssp EEECCSSCCCSCHHHHTTTCSSCCEEECCSSCC-----EESCC-CCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEE
T ss_pred EEECcCCcCCCcccHHHhcCCCCCEEECCCCcc-----cCccC-ccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEE
Confidence 456676665556678899999999999988752 11222 225689999999999998 8888774 49999999
Q ss_pred CCCCCcc-ccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCcc-CcC-cccEEEecCCC
Q 001161 616 MPYSNIE-QLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRI-HLE-LLKELNLSGCS 692 (1134)
Q Consensus 616 L~~n~i~-~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~-~l~-~L~~L~Ls~~~ 692 (1134)
|++|.++ .+|..+..+++|+.|++++|.....+| ...+..+++|++|+|++|.+.+.+|..+ .++ +|++|++++|.
T Consensus 301 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip-~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP-MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379 (768)
T ss_dssp CCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECC-HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSE
T ss_pred CcCCcCCCccchHHhcCCCccEEECCCCcccCcCC-HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCC
Confidence 9999998 468889999999999999987654543 2348899999999999999988898887 566 99999999998
Q ss_pred CCCCccccc----CCCcceeEecCcCcc-ccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCC
Q 001161 693 KLKRLPEIS----SGNIETMHLDGTALE-ELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLP 767 (1134)
Q Consensus 693 ~l~~~~~~~----~~~L~~L~L~~n~i~-~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p 767 (1134)
....+|... ..+|+.|++++|.+. .+|..+.++++|+.|+|++|.+.+.+|..+.++++|+.|++++|.+.+.+|
T Consensus 380 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 459 (768)
T 3rgz_A 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459 (768)
T ss_dssp EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC
Confidence 765555443 268999999999998 788889999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcEEEccCCcCc-ccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCC-CCcccccccc
Q 001161 768 EELGYLEALDSLHAVGTAIR-ELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGIT-ELPESLGLLS 845 (1134)
Q Consensus 768 ~~~~~l~~L~~L~L~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~ 845 (1134)
..+..+++|++|++++|.++ .+|..+.++++|+.|++++|+ +.+..+..+..+++|+.|+|++|.++ .+|..++.++
T Consensus 460 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 538 (768)
T 3rgz_A 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR-LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT
T ss_pred HHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc-cCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 99999999999999999999 788899999999999999998 77777888999999999999999999 6899999999
Q ss_pred CcceeecCCCCcc-ccccch------------------------------------------------------------
Q 001161 846 LVTELHLEGNNFE-RIPESI------------------------------------------------------------ 864 (1134)
Q Consensus 846 ~L~~L~Ls~n~l~-~lp~~l------------------------------------------------------------ 864 (1134)
+|+.|+|++|+++ .+|..+
T Consensus 539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 618 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618 (768)
T ss_dssp TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence 9999999999887 666433
Q ss_pred ----------hCCCCCcEEEeccccCCCccCCc---CCCcCeEeccCCcccccccCCCCCCCCccceeeeccCCCCCCcc
Q 001161 865 ----------IQLSNLEWLFIRYCERLQSLPKL---PCNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDNFKLDPN 931 (1134)
Q Consensus 865 ----------~~l~~L~~L~Ls~n~~l~~lp~~---~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~ 931 (1134)
..+++|+.|+|++|++.+.+|.. +++|+.|++++|.....+|..+ ..+++|+.|+|++|
T Consensus 619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l--~~L~~L~~LdLs~N------ 690 (768)
T 3rgz_A 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV--GDLRGLNILDLSSN------ 690 (768)
T ss_dssp EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSS------
T ss_pred eecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH--hCCCCCCEEECCCC------
Confidence 34578999999999999999964 5789999999998877777554 57899999999999
Q ss_pred ccccchHHHHHHhHHHHHHhHHhhhhcCCCCCC
Q 001161 932 DLGGIVKGALQKIQLLATARLKEAREKISYPSR 964 (1134)
Q Consensus 932 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 964 (1134)
.+++.+|..+.+++.|++|++++|+++|.+|..
T Consensus 691 ~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred cccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 899999999999999999999999999987754
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5e-35 Score=362.57 Aligned_cols=406 Identities=19% Similarity=0.157 Sum_probs=235.9
Q ss_pred ccccCcccccccCccccccCCCccEEEEecCCcccCcceeeccCCCCc-CeeEEEeecCCCCCCCC-CCC-CcccceEee
Q 001161 539 LLDMSKVKDINLHPNVFAKMPNLRILKFYNSMDEENKCKVSHFQGSEF-TEVRYLHWHGYPLKSLP-SNI-HPEKLVLLE 615 (1134)
Q Consensus 539 ~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~lp-~~~-~l~~L~~L~ 615 (1134)
.+|++++....+.+.+|.++++|++|++++|.. ....+..+.. ++|++|++++|.+..++ ..+ .+++|++|+
T Consensus 37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i-----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI-----YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp EEECTTCCCSEECTTTSTTCTTCSEEECTTCCC-----CEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred EEEccCCccCcCChhHhccCccceEEECCCCcc-----ceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 455666665566666666666666666665431 1222333322 66666666666665543 233 366666666
Q ss_pred CCCCCcccc-chhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCcc-CcCccc--EEEecCC
Q 001161 616 MPYSNIEQL-FDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRI-HLELLK--ELNLSGC 691 (1134)
Q Consensus 616 L~~n~i~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~-~l~~L~--~L~Ls~~ 691 (1134)
+++|.++.+ +..+..+++|++|++++|... .++.+. +..+++|++|+|++|.+.+..|..+ .+++|+ .|++++|
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCC-CCCCCT-TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCccc-ccCccc-ccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 666666665 344556666666666665432 222122 2225555555555554443333322 233333 3444433
Q ss_pred C---------------------------------------------------------------------------CCCC
Q 001161 692 S---------------------------------------------------------------------------KLKR 696 (1134)
Q Consensus 692 ~---------------------------------------------------------------------------~l~~ 696 (1134)
. ....
T Consensus 190 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~ 269 (606)
T 3t6q_A 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269 (606)
T ss_dssp CCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred ccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence 2 2111
Q ss_pred cccccC--CCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCc-cccCC
Q 001161 697 LPEISS--GNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPE-ELGYL 773 (1134)
Q Consensus 697 ~~~~~~--~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~-~~~~l 773 (1134)
.+..+. ++|++|++++|.++.+|..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|. .+..+
T Consensus 270 ~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 270 SSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp CTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred CHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 111111 566666666666666666666666666666666666555555666666666666666666544443 36666
Q ss_pred CCCcEEEccCCcCccc---CccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCC-c-cccccccCcc
Q 001161 774 EALDSLHAVGTAIREL---PPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITEL-P-ESLGLLSLVT 848 (1134)
Q Consensus 774 ~~L~~L~L~~n~i~~l---p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l-p-~~l~~l~~L~ 848 (1134)
++|++|++++|.+..+ +..+..+++|+.|++++|. +....+..+..+++|+.|++++|.++.. | ..+..+++|+
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence 6777777777666644 4456666777777777665 4444445566677777777777766643 2 2366677777
Q ss_pred eeecCCCCcccc-ccchhCCCCCcEEEeccccCCCc-cC-----CcCCCcCeEeccCCcccccccCCCCCCCCccceeee
Q 001161 849 ELHLEGNNFERI-PESIIQLSNLEWLFIRYCERLQS-LP-----KLPCNLIWLDAHHCTALESLPGLFPSSNESYLRTLY 921 (1134)
Q Consensus 849 ~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~~l~~-lp-----~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 921 (1134)
+|+|++|.++.. |..+.++++|+.|+|++|++.+. +| ..+++|+.|++++|......+..+ ..+++|+.|+
T Consensus 429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~ 506 (606)
T 3t6q_A 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF--TSLKMMNHVD 506 (606)
T ss_dssp EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEE
T ss_pred EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh--ccccCCCEEE
Confidence 777777777643 45566777777777777766542 11 134567777777765544434333 4567777777
Q ss_pred ccCCCCCCccccccchHHHHHHhHHHHHHhHHhhhhcCCC
Q 001161 922 LSDNFKLDPNDLGGIVKGALQKIQLLATARLKEAREKISY 961 (1134)
Q Consensus 922 Ls~n~~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 961 (1134)
|++| .++++.|..+.+++.| .|++++|++++..
T Consensus 507 Ls~N------~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~ 539 (606)
T 3t6q_A 507 LSHN------RLTSSSIEALSHLKGI-YLNLASNHISIIL 539 (606)
T ss_dssp CCSS------CCCGGGGGGGTTCCSC-EEECCSSCCCCCC
T ss_pred CCCC------ccCcCChhHhCccccc-EEECcCCcccccC
Confidence 7777 6666777777777777 7777777776533
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.4e-35 Score=361.59 Aligned_cols=373 Identities=16% Similarity=0.114 Sum_probs=220.8
Q ss_pred cccCcccccccCccccccCCCccEEEEecCCcccCcceeeccCCCCc-CeeEEEeecCCCCCCC-CCCC-CcccceEeeC
Q 001161 540 LDMSKVKDINLHPNVFAKMPNLRILKFYNSMDEENKCKVSHFQGSEF-TEVRYLHWHGYPLKSL-PSNI-HPEKLVLLEM 616 (1134)
Q Consensus 540 ldls~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~l-p~~~-~l~~L~~L~L 616 (1134)
+|+++.....++.. +. ++++.|++++|.. ....+..+.. ++|++|++++|.+..+ |..+ .+++|++|+|
T Consensus 17 ~~c~~~~l~~iP~~-l~--~~l~~L~Ls~n~i-----~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 88 (606)
T 3t6q_A 17 YNCENLGLNEIPGT-LP--NSTECLEFSFNVL-----PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVL 88 (606)
T ss_dssp EECTTSCCSSCCTT-SC--TTCCEEECTTCCC-----SEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred EECCCCCcccCcCC-CC--CcCcEEEccCCcc-----CcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeC
Confidence 44444444444432 22 3789999998753 2222334433 9999999999999977 4445 5999999999
Q ss_pred CCCCcccc-chhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCc-ccCCccCcCcccEEEecCCCCC
Q 001161 617 PYSNIEQL-FDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQ-SLPDRIHLELLKELNLSGCSKL 694 (1134)
Q Consensus 617 ~~n~i~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~-~lp~~~~l~~L~~L~Ls~~~~l 694 (1134)
++|.+..+ +..+..+++|++|++++|...... +..+..+++|++|+|++|.+.+ ..|....+++|++|++++|...
T Consensus 89 s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 89 TANPLIFMAETALSGPKALKHLFFIQTGISSID--FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp TTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG--GSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred CCCcccccChhhhcccccccEeeccccCcccCC--cchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc
Confidence 99999987 667889999999999998744321 4568999999999999999887 4577678999999999998655
Q ss_pred CCcccccC--CCcc--eeEecCcCccccCccccCCC--------------------------------------------
Q 001161 695 KRLPEISS--GNIE--TMHLDGTALEELPSSIECLS-------------------------------------------- 726 (1134)
Q Consensus 695 ~~~~~~~~--~~L~--~L~L~~n~i~~lp~~~~~l~-------------------------------------------- 726 (1134)
...+.... .+|+ .|++++|.+..+++......
T Consensus 167 ~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~ 246 (606)
T 3t6q_A 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246 (606)
T ss_dssp EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGG
T ss_pred ccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChh
Confidence 43333222 4555 56666666654443211111
Q ss_pred --------CCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCccc-CccccCCC
Q 001161 727 --------KLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIREL-PPSIVRLK 797 (1134)
Q Consensus 727 --------~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~ 797 (1134)
+|+.|++++|.+.+..+..|.++++|++|++++|.+. .+|..+..+++|++|++++|.+..+ |..+..++
T Consensus 247 ~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 325 (606)
T 3t6q_A 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325 (606)
T ss_dssp GGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred HhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccC
Confidence 3444555555544444444555556666666655443 4555555555666666666555544 33455555
Q ss_pred CCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCC---ccccccccCcceeecCCCCcccc-ccchhCCCCCcEE
Q 001161 798 SVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITEL---PESLGLLSLVTELHLEGNNFERI-PESIIQLSNLEWL 873 (1134)
Q Consensus 798 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l---p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L 873 (1134)
+|+.|++++|..........+..+++|++|++++|.++.+ +..++.+++|++|+|++|.++.+ |..+..+++|+.|
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 405 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405 (606)
T ss_dssp TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE
Confidence 5555555555422122222345555555555555555543 33455555555555555555533 3445555555555
Q ss_pred EeccccCCCccCC----cCCCcCeEeccCCcccccccCCCCCCCCccceeeeccCC
Q 001161 874 FIRYCERLQSLPK----LPCNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDN 925 (1134)
Q Consensus 874 ~Ls~n~~l~~lp~----~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n 925 (1134)
++++|++.+..|. .+++|+.|++++|......+..+ ..+++|+.|++++|
T Consensus 406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n 459 (606)
T 3t6q_A 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF--DGLPALQHLNLQGN 459 (606)
T ss_dssp ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT--TTCTTCCEEECTTC
T ss_pred ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH--hCCCCCCEEECCCC
Confidence 5555554443321 23445555555544332222221 23445555555554
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.5e-34 Score=387.01 Aligned_cols=308 Identities=20% Similarity=0.247 Sum_probs=245.6
Q ss_pred cCCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHH---HhccCCceeeeeechhHhhcCCHH
Q 001161 186 TFQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSK---ISRHFAGSFFARNVREAEETGRLG 262 (1134)
Q Consensus 186 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~ 262 (1134)
..|..+..||||+.++++|.++|....+++++|+|+||||+||||||+++|++ ...+|...+||..++... .....
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~ 196 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD-KSGLL 196 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC-HHHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC-chHHH
Confidence 45667788999999999999999776678899999999999999999999975 356687666554443321 11233
Q ss_pred HHHHHHHHHHhcCCCCC----CCccccHHHHHHhhcCC--cceEEEecCCChHHHHHHhcCcCCCCCCcEEEEEeCChhh
Q 001161 263 DLRQQLLSTLLNDGNVK----NFPNIDLNFQSKKLTRK--KVLIVFDDVNHPRQIKILVGRLDLLASGSRIIITTRDRQV 336 (1134)
Q Consensus 263 ~l~~~ll~~l~~~~~~~----~~~~~~~~~l~~~L~~k--~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIiiTTR~~~~ 336 (1134)
...+.++..+....... ...+.....++..+.++ |+||||||||+.++++.+ ++|++||||||++.+
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTT
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHH
Confidence 44555666655433222 33445566667777766 999999999999877654 689999999999998
Q ss_pred hhh-cCCCeEEEecC-CCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001161 337 LAN-CGVDEVYQMKE-LVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLGRYLYGKRREVWENAISKW 414 (1134)
Q Consensus 337 ~~~-~~~~~~~~l~~-L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~l 414 (1134)
+.. .+....++++. |+.+||++||...++.. .+.+.+.+++|+++|+|+||||+++|++|+.+. ..|+..++++
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l 345 (1249)
T 3sfz_A 270 TDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQL 345 (1249)
T ss_dssp TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHH
T ss_pred HHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHH
Confidence 854 45567899996 99999999999988433 234456799999999999999999999998766 4799999988
Q ss_pred HcCCC-----------CchhhhhhhhhcCCCHHHHHHHHhhhcccCCCC--HHHHHHHhhhCCCchhcchHHhhccCCee
Q 001161 415 ETAPP-----------KGIQDALKISYDGLDDKEQNVFLDIACFFIDDD--RDTVTKFLDDCEFFATSGIEVLVDKHLIT 481 (1134)
Q Consensus 415 ~~~~~-----------~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~l~~~~~~~~~~~~~~i~~L~~~sLi~ 481 (1134)
..... ..+..++++||+.|++++|.||+++|+||.++. .+.+..+|..++..++..++.|+++|||+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~ 425 (1249)
T 3sfz_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLF 425 (1249)
T ss_dssp HSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCE
T ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceE
Confidence 66542 248889999999999999999999999999874 56788899887777888999999999999
Q ss_pred EecCCe---EEEChhHHHHHHHHhhcc
Q 001161 482 ISVRNK---IKMHDLLRAMGREIVRQE 505 (1134)
Q Consensus 482 ~~~~~~---~~mHdlv~~~~~~i~~~e 505 (1134)
....+. |+||+++|+++++...++
T Consensus 426 ~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 426 CNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred EecCCCceEEEecHHHHHHHHhhhhHH
Confidence 876554 999999999999986654
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.3e-34 Score=356.57 Aligned_cols=398 Identities=19% Similarity=0.180 Sum_probs=264.0
Q ss_pred ccccCcccccccCccccccCCCccEEEEecCCcccCcceeeccCCCC-cCeeEEEeecCCCCCCC-CCCC-CcccceEee
Q 001161 539 LLDMSKVKDINLHPNVFAKMPNLRILKFYNSMDEENKCKVSHFQGSE-FTEVRYLHWHGYPLKSL-PSNI-HPEKLVLLE 615 (1134)
Q Consensus 539 ~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~l~~l-p~~~-~l~~L~~L~ 615 (1134)
.+|++++....+.+..|.++++|++|++++|.. ....+..+. +++|++|++++|.++.+ |..+ .+++|++|+
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-----~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI-----ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCC-----CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCcc-----cccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 467777777778888888888888888887642 222233333 38888888888888887 5555 488888888
Q ss_pred CCCCCccccc-hhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCcc-CcC------------
Q 001161 616 MPYSNIEQLF-DIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRI-HLE------------ 681 (1134)
Q Consensus 616 L~~n~i~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~-~l~------------ 681 (1134)
+++|.++.++ ..+..+.+|++|++++|.. .....|..++++++|++|+|++|.+.+..|..+ .+.
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFI-HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCC-CCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcc-cceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 8888888775 5678888888888888754 332336678888888888888887766555433 222
Q ss_pred ---------------cccEEEecCCCCC----------------------------------------------------
Q 001161 682 ---------------LLKELNLSGCSKL---------------------------------------------------- 694 (1134)
Q Consensus 682 ---------------~L~~L~Ls~~~~l---------------------------------------------------- 694 (1134)
+|+.|++++|...
T Consensus 190 ~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 4555555554321
Q ss_pred ------CCcccccC-CCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCC
Q 001161 695 ------KRLPEISS-GNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLP 767 (1134)
Q Consensus 695 ------~~~~~~~~-~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p 767 (1134)
...|.+.. .+|+.|+++++.+..+| .+..+++|+.|++++|.+ +.+|. + .+++|++|++++|...+.+
T Consensus 270 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~- 344 (606)
T 3vq2_A 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF- 344 (606)
T ss_dssp CCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC-
T ss_pred ccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch-
Confidence 00011111 45666666666666666 566666777777777765 56663 4 6777777777776544433
Q ss_pred ccccCCCCCcEEEccCCcCccc---CccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCc--cccc
Q 001161 768 EELGYLEALDSLHAVGTAIREL---PPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELP--ESLG 842 (1134)
Q Consensus 768 ~~~~~l~~L~~L~L~~n~i~~l---p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp--~~l~ 842 (1134)
.+..+++|++|++++|.++.+ |..+..+++|+.|++++|. +.. .+..+..+++|+.|++++|.++.++ ..+.
T Consensus 345 -~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 345 -KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp -CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred -hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-ccc-chhhccCCCCCCeeECCCCccCCccChhhhh
Confidence 455677777777777777644 5666777777777777776 332 2245667777777777777777553 3566
Q ss_pred cccCcceeecCCCCccc-cccchhCCCCCcEEEeccccCCCc-cCC---cCCCcCeEeccCCcccccccCCCCCCCCccc
Q 001161 843 LLSLVTELHLEGNNFER-IPESIIQLSNLEWLFIRYCERLQS-LPK---LPCNLIWLDAHHCTALESLPGLFPSSNESYL 917 (1134)
Q Consensus 843 ~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~~l~~-lp~---~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L 917 (1134)
.+++|++|++++|.++. .|..+.++++|+.|++++|++.+. +|. .+++|+.|++++|......+..+ ..+++|
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L 499 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF--DTLHRL 499 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT--TTCTTC
T ss_pred ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh--cccccC
Confidence 77777777777777774 456677777777777777776653 443 23577777777775544444333 456777
Q ss_pred eeeeccCCCCCCccccccchHHHHHHhHHHHHHhHHhhhhc
Q 001161 918 RTLYLSDNFKLDPNDLGGIVKGALQKIQLLATARLKEAREK 958 (1134)
Q Consensus 918 ~~L~Ls~n~~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~ 958 (1134)
+.|+|++| .++++.|..+.++++|+.|++++|+++
T Consensus 500 ~~L~Ls~N------~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 500 QLLNMSHN------NLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CEEECCSS------CCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CEEECCCC------cCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 77777777 666666777777777777777777665
No 10
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=7.9e-35 Score=353.71 Aligned_cols=280 Identities=15% Similarity=0.132 Sum_probs=213.3
Q ss_pred CCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHH--HHhccCCceeeeeechhHhhcCCHHHHHHHHH
Q 001161 192 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFS--KISRHFAGSFFARNVREAEETGRLGDLRQQLL 269 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll 269 (1134)
+..|||+.++++|.++|... +++++|+|+||||+||||||+++|+ +++.+|+..+||.++ +.......+...++
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsV---s~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL---KNCNSPETVLEMLQ 203 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEEC---CCSSSHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEe---CCCCCHHHHHHHHH
Confidence 34599999999999999753 3479999999999999999999997 578899974444344 33344555555555
Q ss_pred HHHhcCC---CCC--------CCccccHHHHHHhh---cCCcceEEEecCCChHHHHHHhcCcCCCCCCcEEEEEeCChh
Q 001161 270 STLLNDG---NVK--------NFPNIDLNFQSKKL---TRKKVLIVFDDVNHPRQIKILVGRLDLLASGSRIIITTRDRQ 335 (1134)
Q Consensus 270 ~~l~~~~---~~~--------~~~~~~~~~l~~~L---~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIiiTTR~~~ 335 (1134)
..+.... ... .+.+.....+++.| .++|+||||||||+.++|+.+ ++||+||||||++.
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~ 276 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQ 276 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSH
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChH
Confidence 4332110 100 11223345566655 679999999999999999876 27999999999999
Q ss_pred hhhhcCCCeEEEec------CCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHhcCC--CHHHH
Q 001161 336 VLANCGVDEVYQMK------ELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLGRYLYGK--RREVW 407 (1134)
Q Consensus 336 ~~~~~~~~~~~~l~------~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~--~~~~w 407 (1134)
++..+.....|+|+ +|+.+||++||+++. +.. ..++..++ |+|+||||+++|+.|+++ +.++|
T Consensus 277 Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW 347 (1221)
T 1vt4_I 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNW 347 (1221)
T ss_dssp HHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHH
T ss_pred HHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 87644333356777 999999999999984 222 12333343 999999999999999877 67788
Q ss_pred HHHHHHHHcCCCCchhhhhhhhhcCCCHHH-HHHHHhhhcccCCCCH--HHHHHHhhhCCC-chhcchHHhhccCCeeEe
Q 001161 408 ENAISKWETAPPKGIQDALKISYDGLDDKE-QNVFLDIACFFIDDDR--DTVTKFLDDCEF-FATSGIEVLVDKHLITIS 483 (1134)
Q Consensus 408 ~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~-k~~fl~~a~f~~~~~~--~~l~~~~~~~~~-~~~~~i~~L~~~sLi~~~ 483 (1134)
+.. ....+..+|+.||+.|++++ |.||+++|+||.+..+ +.+..+|.+.+. .+...++.|+++|||+..
T Consensus 348 ~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d 420 (1221)
T 1vt4_I 348 KHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420 (1221)
T ss_dssp HHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBC
T ss_pred hcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEe
Confidence 753 34679999999999999999 9999999999998754 568888988753 467789999999999986
Q ss_pred c-CCeEEEChhHHHHH
Q 001161 484 V-RNKIKMHDLLRAMG 498 (1134)
Q Consensus 484 ~-~~~~~mHdlv~~~~ 498 (1134)
. .++|+|||++++++
T Consensus 421 ~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 421 PKESTISIPSIYLELK 436 (1221)
T ss_dssp SSSSEEBCCCHHHHHH
T ss_pred CCCCEEEehHHHHHHh
Confidence 3 56899999998854
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.5e-34 Score=358.14 Aligned_cols=336 Identities=18% Similarity=0.192 Sum_probs=291.2
Q ss_pred CCCccccchhhhccccchhhccccccCcCC-----------------CCCCCCCc--CCCCCcEEEccCCCCCcccCCcc
Q 001161 618 YSNIEQLFDIVQNHGKLYQIITAAFNFFSK-----------------TPTPLSTQ--HLNKLAILNLSGCGNLQSLPDRI 678 (1134)
Q Consensus 618 ~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~-----------------~~~~~~~~--~l~~L~~L~L~~~~~~~~lp~~~ 678 (1134)
.|+++.+|..+.++++|++|++++|..... + |..++ ++++|++|+|++|.+.+.+|..+
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i--p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l 269 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK--TEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT--TSCCCGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccC--chhhhhcccCCCCEEEecCCcCCccChHHH
Confidence 578888999999999999999999884432 4 55677 99999999999999999999887
Q ss_pred -CcCcccEEEecCCCCCC--CcccccC--------CCcceeEecCcCccccCc--cccCCCCCCeeeccCCcCCcccCcc
Q 001161 679 -HLELLKELNLSGCSKLK--RLPEISS--------GNIETMHLDGTALEELPS--SIECLSKLSRLDLADCKSLKSLPSG 745 (1134)
Q Consensus 679 -~l~~L~~L~Ls~~~~l~--~~~~~~~--------~~L~~L~L~~n~i~~lp~--~~~~l~~L~~L~L~~n~~~~~lp~~ 745 (1134)
++++|++|+|++|..+. .+|.... ++|+.|++++|.++.+|. .++++++|+.|++++|.+.+.+| .
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 69999999999998444 4665332 799999999999999999 89999999999999999888999 8
Q ss_pred cCCCCCCcEEeecCCCCCCCCCccccCCCC-CcEEEccCCcCcccCccccCCC--CCCEEEecCCCCCCCCcccccC---
Q 001161 746 LCKLKSLDVLNIDGCSNLQRLPEELGYLEA-LDSLHAVGTAIRELPPSIVRLK--SVRAIYFGRNRGLSLPITFSVD--- 819 (1134)
Q Consensus 746 l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~-L~~L~L~~n~i~~lp~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~--- 819 (1134)
+..+++|++|++++|.+. .+|..+..+++ |++|++++|.++.+|..+..++ +|+.|++++|. +.+..+..+.
T Consensus 349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~ 426 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE-IGSVDGKNFDPLD 426 (636)
T ss_dssp CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSC-TTTTTTCSSCTTC
T ss_pred hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCc-CCCcchhhhcccc
Confidence 999999999999999877 88888999999 9999999999999999887755 99999999998 6666666666
Q ss_pred ----CCCCCCEEeccCCCCCCCcccc-ccccCcceeecCCCCccccccchhC--------CCCCcEEEeccccCCCccCC
Q 001161 820 ----GLQNLRDLNLNDCGITELPESL-GLLSLVTELHLEGNNFERIPESIIQ--------LSNLEWLFIRYCERLQSLPK 886 (1134)
Q Consensus 820 ----~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~Ls~n~l~~lp~~l~~--------l~~L~~L~Ls~n~~l~~lp~ 886 (1134)
.+++|+.|+|++|.++.+|..+ ..+++|++|+|++|+++.+|..+.. +++|+.|+|++|++. .+|.
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 505 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD 505 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCG
T ss_pred cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccCh
Confidence 7789999999999999998865 4589999999999999999865443 239999999999987 6774
Q ss_pred -----cCCCcCeEeccCCcccccccCCCCCCCCccceeeeccCCCCCCccccccchHHHHHHhHHHHHHhHHhhhhcCCC
Q 001161 887 -----LPCNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDNFKLDPNDLGGIVKGALQKIQLLATARLKEAREKISY 961 (1134)
Q Consensus 887 -----~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 961 (1134)
.+++|+.|++++|.... +|..+ ..+++|+.|+|++|..+++|.+.+.+|..+.++++|+.|+|++|++ +.+
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~l~~-ip~~~--~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~i 581 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNSFSK-FPTQP--LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKV 581 (636)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-CCCGG--GGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred hhhhccCCCcCEEECCCCCCCC-cChhh--hcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Ccc
Confidence 45789999999987654 65443 4789999999999988899999999999999999999999999988 545
Q ss_pred CC
Q 001161 962 PS 963 (1134)
Q Consensus 962 ~~ 963 (1134)
|.
T Consensus 582 p~ 583 (636)
T 4eco_A 582 NE 583 (636)
T ss_dssp CS
T ss_pred CH
Confidence 54
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.9e-34 Score=350.83 Aligned_cols=331 Identities=16% Similarity=0.149 Sum_probs=257.6
Q ss_pred CeeEEEeecCCCCCC------------------CCCCCC---cccceEeeCCCCCcc-ccchhhhccccchhhccccccC
Q 001161 587 TEVRYLHWHGYPLKS------------------LPSNIH---PEKLVLLEMPYSNIE-QLFDIVQNHGKLYQIITAAFNF 644 (1134)
Q Consensus 587 ~~L~~L~l~~~~l~~------------------lp~~~~---l~~L~~L~L~~n~i~-~l~~~~~~l~~L~~L~l~~~~~ 644 (1134)
++|++|++++|.++. +|..+. +++|++|+|++|.+. .+|..+.++++|+.|++++|..
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 788888888888887 888765 888888888888865 4677888888888888888873
Q ss_pred cCCCCCCCCCcCC------CCCcEEEccCCCCCcccCC--cc-CcCcccEEEecCCCCCCCcccccC-CCcceeEecCcC
Q 001161 645 FSKTPTPLSTQHL------NKLAILNLSGCGNLQSLPD--RI-HLELLKELNLSGCSKLKRLPEISS-GNIETMHLDGTA 714 (1134)
Q Consensus 645 l~~~~~~~~~~~l------~~L~~L~L~~~~~~~~lp~--~~-~l~~L~~L~Ls~~~~l~~~~~~~~-~~L~~L~L~~n~ 714 (1134)
+.....|..++.+ ++|++|+|++|.+. .+|. .+ ++++|++|++++|...+.+|.+.. .+|+.|++++|.
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ 364 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc
Confidence 4320113445554 88888888888877 7777 45 688889999988876657773322 788888999888
Q ss_pred ccccCccccCCCC-CCeeeccCCcCCcccCcccCCCC--CCcEEeecCCCCCCCCCcccc-------CCCCCcEEEccCC
Q 001161 715 LEELPSSIECLSK-LSRLDLADCKSLKSLPSGLCKLK--SLDVLNIDGCSNLQRLPEELG-------YLEALDSLHAVGT 784 (1134)
Q Consensus 715 i~~lp~~~~~l~~-L~~L~L~~n~~~~~lp~~l~~l~--~L~~L~L~~~~~~~~~p~~~~-------~l~~L~~L~L~~n 784 (1134)
+..+|..+..+++ |+.|++++|.+. .+|..+..++ +|++|++++|.+.+..|..+. .+++|+.|++++|
T Consensus 365 l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N 443 (636)
T 4eco_A 365 ITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443 (636)
T ss_dssp EEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS
T ss_pred cccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC
Confidence 8888888888888 999999988866 7787776654 888999999888888888777 7788899999999
Q ss_pred cCcccCcccc-CCCCCCEEEecCCCCCCCCcccccC-------CCCCCCEEeccCCCCCCCccccc--cccCcceeecCC
Q 001161 785 AIRELPPSIV-RLKSVRAIYFGRNRGLSLPITFSVD-------GLQNLRDLNLNDCGITELPESLG--LLSLVTELHLEG 854 (1134)
Q Consensus 785 ~i~~lp~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~-------~l~~L~~L~Ls~n~l~~lp~~l~--~l~~L~~L~Ls~ 854 (1134)
.++.+|..+. .+++|+.|++++|. +.......+. ++++|+.|+|++|+++.+|..+. .+++|+.|+|++
T Consensus 444 ~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~ 522 (636)
T 4eco_A 444 QISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY 522 (636)
T ss_dssp CCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCS
T ss_pred ccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCC
Confidence 8888887655 48889999998887 4432222222 23388999999998888888886 888999999999
Q ss_pred CCccccccchhCCCCCcEEEec------cccCCCccCCc---CCCcCeEeccCCcccccccCCCCCCCCccceeeeccCC
Q 001161 855 NNFERIPESIIQLSNLEWLFIR------YCERLQSLPKL---PCNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDN 925 (1134)
Q Consensus 855 n~l~~lp~~l~~l~~L~~L~Ls------~n~~l~~lp~~---~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n 925 (1134)
|+++.+|..+.++++|+.|+|+ +|++.+.+|.. +++|+.|++++|.. +.+|..+ .++|+.|+|++|
T Consensus 523 N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~----~~~L~~L~Ls~N 597 (636)
T 4eco_A 523 NSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI----TPNISVLDIKDN 597 (636)
T ss_dssp SCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC----CTTCCEEECCSC
T ss_pred CCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH----hCcCCEEECcCC
Confidence 9888888888889999999884 56667777753 46788888888766 6666443 268888888888
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=359.57 Aligned_cols=406 Identities=18% Similarity=0.156 Sum_probs=239.2
Q ss_pred ccccCcccccccCccccccCCCccEEEEecCCcccCcceeeccCCCCc-CeeEEEeecCCCCCCC-CCCC-CcccceEee
Q 001161 539 LLDMSKVKDINLHPNVFAKMPNLRILKFYNSMDEENKCKVSHFQGSEF-TEVRYLHWHGYPLKSL-PSNI-HPEKLVLLE 615 (1134)
Q Consensus 539 ~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~l-p~~~-~l~~L~~L~ 615 (1134)
.+|++.+....+.+..|.++++|++|++++|.. .....+..+.. ++|++|++++|.+..+ |..+ .+++|++|+
T Consensus 28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~----~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT----PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp EEEEESCCCCEECSSSCSSCCSCSEEEECTTCC----CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred EEECCCCcCCccChhHCcccccCeEEeCCCCCC----ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 478888888888889999999999999988631 11122344444 8999999999999877 5556 489999999
Q ss_pred CCCCCccc-cchh--hhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCcc-Cc--CcccEEEec
Q 001161 616 MPYSNIEQ-LFDI--VQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRI-HL--ELLKELNLS 689 (1134)
Q Consensus 616 L~~n~i~~-l~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~-~l--~~L~~L~Ls 689 (1134)
|++|.+.. ++.. +.++++|++|++++|... ..+.+..++++++|++|+|++|.+.+..|..+ .+ ++|+.|+|+
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~-~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR-SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCC-CCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCccc-ccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 99999986 4444 788999999999988653 33334578999999999999988877666554 23 555555555
Q ss_pred CCCCCCCcccccC--------CCcceeEecCcCcc-ccCccc------------------------------------cC
Q 001161 690 GCSKLKRLPEISS--------GNIETMHLDGTALE-ELPSSI------------------------------------EC 724 (1134)
Q Consensus 690 ~~~~l~~~~~~~~--------~~L~~L~L~~n~i~-~lp~~~------------------------------------~~ 724 (1134)
+|......|.... ..|+.|++++|.+. .+|..+ ..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 5544333322111 12444444444332 111110 00
Q ss_pred --CCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCccc-CccccCCCCCCE
Q 001161 725 --LSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIREL-PPSIVRLKSVRA 801 (1134)
Q Consensus 725 --l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~ 801 (1134)
.++|+.|+|++|.+.+..|..+..+++|+.|+|++|.+.+..|..+..+++|++|++++|.++.+ |..+..+++|+.
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 13444444544444444444444444555555554444444444444444555555554444433 334444444555
Q ss_pred EEecCCCCCCCCcccccCCCCCCCEEeccCC-------------------CCCCCccccccccCcceeecCCCCcccccc
Q 001161 802 IYFGRNRGLSLPITFSVDGLQNLRDLNLNDC-------------------GITELPESLGLLSLVTELHLEGNNFERIPE 862 (1134)
Q Consensus 802 L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n-------------------~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~ 862 (1134)
|++++|. +....+..+.++++|+.|+|++| +++.+|.. ..+++.|++++|+++.++.
T Consensus 343 L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~ 418 (844)
T 3j0a_A 343 IDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDI 418 (844)
T ss_dssp EECCSCC-CCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTT
T ss_pred EECCCCC-CCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccccc---ccccceeecccCccccCch
Confidence 5554443 33333333444444444444444 44444332 2345555555555554432
Q ss_pred --chhCCCCCcEEEeccccCCCcc----CCcCCCcCeEeccCCcccccccCCC---CCCCCccceeeeccCCCCCCcccc
Q 001161 863 --SIIQLSNLEWLFIRYCERLQSL----PKLPCNLIWLDAHHCTALESLPGLF---PSSNESYLRTLYLSDNFKLDPNDL 933 (1134)
Q Consensus 863 --~l~~l~~L~~L~Ls~n~~l~~l----p~~~~~L~~L~l~~c~~l~~~~~~~---~~~~l~~L~~L~Ls~n~~L~~~~l 933 (1134)
.+.++++|+.|+|++|++.+.. +..+++|+.|++++|......+... ....+++|+.|+|++| .+
T Consensus 419 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N------~l 492 (844)
T 3j0a_A 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN------YL 492 (844)
T ss_dssp HHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH------HH
T ss_pred hhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC------cc
Confidence 3457788888888888776432 2345677888887765432211111 0135567777777766 66
Q ss_pred ccchHHHHHHhHHHHHHhHHhhhhcC
Q 001161 934 GGIVKGALQKIQLLATARLKEAREKI 959 (1134)
Q Consensus 934 ~~~~~~~~~~l~~L~~L~L~~n~~~~ 959 (1134)
+++.|..|.++++|+.|+|++|++++
T Consensus 493 ~~~~~~~~~~l~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 493 NSLPPGVFSHLTALRGLSLNSNRLTV 518 (844)
T ss_dssp TTCCTTSSSSCCSCSEEEEESCCCSS
T ss_pred cccChhHccchhhhheeECCCCCCCc
Confidence 66666666667777777777776665
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.1e-33 Score=352.89 Aligned_cols=353 Identities=15% Similarity=0.118 Sum_probs=280.8
Q ss_pred CeeEEEeecCCCCCC------------------CCCCC---CcccceEeeCCCCCcc-ccchhhhccccchhhccccccC
Q 001161 587 TEVRYLHWHGYPLKS------------------LPSNI---HPEKLVLLEMPYSNIE-QLFDIVQNHGKLYQIITAAFNF 644 (1134)
Q Consensus 587 ~~L~~L~l~~~~l~~------------------lp~~~---~l~~L~~L~L~~n~i~-~l~~~~~~l~~L~~L~l~~~~~ 644 (1134)
++|++|++++|.++. +|..+ .+++|++|+|++|++. .+|..+.++++|+.|++++|+.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 889999999999998 89887 4899999999999855 5788889999999999999874
Q ss_pred cCC--CCCCC-------CCcCCCCCcEEEccCCCCCcccCC--cc-CcCcccEEEecCCCCCCCcccccC-CCcceeEec
Q 001161 645 FSK--TPTPL-------STQHLNKLAILNLSGCGNLQSLPD--RI-HLELLKELNLSGCSKLKRLPEISS-GNIETMHLD 711 (1134)
Q Consensus 645 l~~--~~~~~-------~~~~l~~L~~L~L~~~~~~~~lp~--~~-~l~~L~~L~Ls~~~~l~~~~~~~~-~~L~~L~L~ 711 (1134)
+.. + |. .+..+++|++|+|++|.+. .+|. .+ ++++|+.|+|++|... .+|.+.. ++|+.|+|+
T Consensus 528 lsg~~i--P~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 528 ISAAQL--KADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLD 603 (876)
T ss_dssp SCHHHH--HHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECC
T ss_pred cccccc--hHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECc
Confidence 443 3 22 3345569999999998887 7888 55 7999999999998765 7774433 889999999
Q ss_pred CcCccccCccccCCCC-CCeeeccCCcCCcccCcccCCCCC--CcEEeecCCCCCCCCCcc---cc--CCCCCcEEEccC
Q 001161 712 GTALEELPSSIECLSK-LSRLDLADCKSLKSLPSGLCKLKS--LDVLNIDGCSNLQRLPEE---LG--YLEALDSLHAVG 783 (1134)
Q Consensus 712 ~n~i~~lp~~~~~l~~-L~~L~L~~n~~~~~lp~~l~~l~~--L~~L~L~~~~~~~~~p~~---~~--~l~~L~~L~L~~ 783 (1134)
+|.+..+|..+..+++ |+.|+|++|.+. .+|..+..++. |+.|++++|.+.+.+|.. +. .+++|+.|++++
T Consensus 604 ~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~ 682 (876)
T 4ecn_A 604 YNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682 (876)
T ss_dssp SSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCS
T ss_pred CCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccC
Confidence 9999999999999998 999999999866 78887776654 999999999988766543 22 345899999999
Q ss_pred CcCcccCcccc-CCCCCCEEEecCCCCCCCCcccccC-------CCCCCCEEeccCCCCCCCccccc--cccCcceeecC
Q 001161 784 TAIRELPPSIV-RLKSVRAIYFGRNRGLSLPITFSVD-------GLQNLRDLNLNDCGITELPESLG--LLSLVTELHLE 853 (1134)
Q Consensus 784 n~i~~lp~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~-------~l~~L~~L~Ls~n~l~~lp~~l~--~l~~L~~L~Ls 853 (1134)
|.++.+|..+. .+++|+.|+|++|. +.......+. ++++|+.|+|++|+++.+|..+. .+++|+.|+|+
T Consensus 683 N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls 761 (876)
T 4ecn_A 683 NEIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVS 761 (876)
T ss_dssp SCCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECC
T ss_pred CcCCccCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeC
Confidence 99999998775 78999999999998 4433322222 34499999999999999999887 89999999999
Q ss_pred CCCccccccchhCCCCCcEEEecc------ccCCCccCCc---CCCcCeEeccCCcccccccCCCCCCCCccceeeeccC
Q 001161 854 GNNFERIPESIIQLSNLEWLFIRY------CERLQSLPKL---PCNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSD 924 (1134)
Q Consensus 854 ~n~l~~lp~~l~~l~~L~~L~Ls~------n~~l~~lp~~---~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~ 924 (1134)
+|+++.+|..+.++++|+.|+|++ |++.+.+|.. +++|+.|++++|.. ..+|..+ .++|+.|+|++
T Consensus 762 ~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l----~~~L~~LdLs~ 836 (876)
T 4ecn_A 762 YNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL----TPQLYILDIAD 836 (876)
T ss_dssp SSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC----CSSSCEEECCS
T ss_pred CCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh----cCCCCEEECCC
Confidence 999999999999999999999976 6677788853 57899999999876 6666543 36899999999
Q ss_pred CCCCCccccccchHHHHHHhHHHHHHhHHhhh
Q 001161 925 NFKLDPNDLGGIVKGALQKIQLLATARLKEAR 956 (1134)
Q Consensus 925 n~~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~ 956 (1134)
| .+..+.+..+.....+..+.|.+|.
T Consensus 837 N------~l~~i~~~~~~~~~~~~~~~L~~n~ 862 (876)
T 4ecn_A 837 N------PNISIDVTSVCPYIEAGMYVLLYDK 862 (876)
T ss_dssp C------TTCEEECGGGHHHHHTTCCEEECCT
T ss_pred C------CCCccChHHccccccchheeecCCC
Confidence 9 5555554555544444445555553
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.2e-33 Score=347.81 Aligned_cols=405 Identities=19% Similarity=0.103 Sum_probs=314.6
Q ss_pred ccccCcccccccCccccccCCCccEEEEecCCcccCcceeeccCCCCc-CeeEEEeecCCCCCCCCC-CC-CcccceEee
Q 001161 539 LLDMSKVKDINLHPNVFAKMPNLRILKFYNSMDEENKCKVSHFQGSEF-TEVRYLHWHGYPLKSLPS-NI-HPEKLVLLE 615 (1134)
Q Consensus 539 ~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~ 615 (1134)
.+|++++....+.+.+|.++++|++|++++|.. ....+..+.. ++|++|++++|.++.+|. .+ .+++|++|+
T Consensus 60 ~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l-----~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 60 WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI-----QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-----CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred EEeCCCCcccccCHHHhhchhhcCEeECCCCcc-----cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence 467777777777777888888888888877542 1122333333 778888888888877763 33 477888888
Q ss_pred CCCCCccc--cchhhhccccchhhccccccCcCCCCC-------------------------CCCCcCCCCCcEEEccCC
Q 001161 616 MPYSNIEQ--LFDIVQNHGKLYQIITAAFNFFSKTPT-------------------------PLSTQHLNKLAILNLSGC 668 (1134)
Q Consensus 616 L~~n~i~~--l~~~~~~l~~L~~L~l~~~~~l~~~~~-------------------------~~~~~~l~~L~~L~L~~~ 668 (1134)
+++|.+.. +|..+.++++|++|++++|......+. +.......+|+.|++++|
T Consensus 135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n 214 (606)
T 3vq2_A 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN 214 (606)
T ss_dssp CCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred CCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCC
Confidence 88888774 577777788888887777653322111 111122236778887776
Q ss_pred CCC----------------------------------------------------------cccCCccCcCcccEEEecC
Q 001161 669 GNL----------------------------------------------------------QSLPDRIHLELLKELNLSG 690 (1134)
Q Consensus 669 ~~~----------------------------------------------------------~~lp~~~~l~~L~~L~Ls~ 690 (1134)
... +.+|....+++|+.|++++
T Consensus 215 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 294 (606)
T 3vq2_A 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294 (606)
T ss_dssp CSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEES
T ss_pred ccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecC
Confidence 542 1223322578999999999
Q ss_pred CCCCCCcccccC-CCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCC--CC
Q 001161 691 CSKLKRLPEISS-GNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQR--LP 767 (1134)
Q Consensus 691 ~~~l~~~~~~~~-~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~--~p 767 (1134)
|.. ..+|.+.. .+|+.|++++|.+..+|. + .+++|+.|++++|...+.. .+..+++|++|++++|.+.+. .|
T Consensus 295 ~~~-~~l~~l~~~~~L~~L~l~~n~l~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~ 369 (606)
T 3vq2_A 295 VSI-KYLEDVPKHFKWQSLSIIRCQLKQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCS 369 (606)
T ss_dssp CCC-CCCCCCCTTCCCSEEEEESCCCSSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECC
T ss_pred ccc-hhhhhccccccCCEEEcccccCccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchh
Confidence 865 56664444 799999999999999994 5 9999999999999777665 477999999999999987765 48
Q ss_pred ccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcc-cccCCCCCCCEEeccCCCCCC-Ccccccccc
Q 001161 768 EELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPIT-FSVDGLQNLRDLNLNDCGITE-LPESLGLLS 845 (1134)
Q Consensus 768 ~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~ 845 (1134)
..+..+++|++|++++|.+..+|..+..+++|+.|++++|. +....+ ..+..+++|+.|++++|.++. .|..++.++
T Consensus 370 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 370 YSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp HHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSE-EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred hhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCc-cCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence 88999999999999999999999999999999999999998 444444 578899999999999999996 677899999
Q ss_pred CcceeecCCCCccc--cccchhCCCCCcEEEeccccCCCccCC---cCCCcCeEeccCCcccccccCCCCCCCCccceee
Q 001161 846 LVTELHLEGNNFER--IPESIIQLSNLEWLFIRYCERLQSLPK---LPCNLIWLDAHHCTALESLPGLFPSSNESYLRTL 920 (1134)
Q Consensus 846 ~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~Ls~n~~l~~lp~---~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 920 (1134)
+|++|+|++|.++. +|..+..+++|+.|+|++|++.+..|. ..++|+.|++++|......+..+ ..+++|+.|
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L 526 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY--NQLYSLSTL 526 (606)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGT--TTCTTCCEE
T ss_pred CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHc--cCCCcCCEE
Confidence 99999999999995 788999999999999999998887775 35789999999997766555444 578999999
Q ss_pred eccCCCCCCccccccchHHHHHHhH-HHHHHhHHhhhhcCCCCC
Q 001161 921 YLSDNFKLDPNDLGGIVKGALQKIQ-LLATARLKEAREKISYPS 963 (1134)
Q Consensus 921 ~Ls~n~~L~~~~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~ 963 (1134)
+|++| .++.+.+. +..++ +|+.|++++|++.+.++.
T Consensus 527 ~l~~N------~l~~~p~~-~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 527 DCSFN------RIETSKGI-LQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp ECTTS------CCCCEESC-GGGSCTTCCEEECCSCCCCCSSTT
T ss_pred ECCCC------cCcccCHh-HhhhcccCcEEEccCCCcccCCcc
Confidence 99999 66655444 77776 599999999998876553
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.2e-34 Score=349.90 Aligned_cols=403 Identities=18% Similarity=0.157 Sum_probs=270.4
Q ss_pred cccccCcccccccCccccccCCCccEEEEecCCcccCcceeeccCCCCc-CeeEEEeecCCCCCCCCCC-C-CcccceEe
Q 001161 538 ILLDMSKVKDINLHPNVFAKMPNLRILKFYNSMDEENKCKVSHFQGSEF-TEVRYLHWHGYPLKSLPSN-I-HPEKLVLL 614 (1134)
Q Consensus 538 i~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L 614 (1134)
..+|++++....+.+..|.++++|++|++++|.. ....+..+.. ++|++|++++|.++.+|.. + .+++|++|
T Consensus 29 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i-----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 29 KSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-----NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp CEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC-----CEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred cEEECcCCccCccChhhhhcCCcccEEECCCCCc-----CccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 3567788877777788899999999999988642 2222233333 8899999999999888875 3 58899999
Q ss_pred eCCCCCcccc--chhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCcc-CcCcccEEEecCC
Q 001161 615 EMPYSNIEQL--FDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRI-HLELLKELNLSGC 691 (1134)
Q Consensus 615 ~L~~n~i~~l--~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~-~l~~L~~L~Ls~~ 691 (1134)
++++|.++.+ +..+..+++|++|++++|..+..++ +..+..+++|++|++++|.+.+..|..+ .+++|++|++++|
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccC-HhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 9999998854 5678888999999999887666554 3568889999999999988888777776 5788888888876
Q ss_pred CCCCCccccc---CCCcceeEecCcCccccC---cc-ccCCCCCCeeeccCCcCCccc----CcccCCCCCCcEEeecCC
Q 001161 692 SKLKRLPEIS---SGNIETMHLDGTALEELP---SS-IECLSKLSRLDLADCKSLKSL----PSGLCKLKSLDVLNIDGC 760 (1134)
Q Consensus 692 ~~l~~~~~~~---~~~L~~L~L~~n~i~~lp---~~-~~~l~~L~~L~L~~n~~~~~l----p~~l~~l~~L~~L~L~~~ 760 (1134)
.. ..+|... ..+|+.|++++|.+..++ .. ...+++|+.|++++|.+.+.. +..+..+++|+.|++++|
T Consensus 183 ~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 183 ES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp BS-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred cc-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence 53 3344332 267888888888777652 11 234555666666655443321 111223334444444433
Q ss_pred CCCC-----------------------------------CCCccccCCCCCcEEEccCCcCcccCccc-cCCCCCCEEEe
Q 001161 761 SNLQ-----------------------------------RLPEELGYLEALDSLHAVGTAIRELPPSI-VRLKSVRAIYF 804 (1134)
Q Consensus 761 ~~~~-----------------------------------~~p~~~~~l~~L~~L~L~~n~i~~lp~~~-~~l~~L~~L~l 804 (1134)
.+.+ .++..+..+++|+.|++++|.+..+|..+ ..+++|+.|++
T Consensus 262 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~L 341 (549)
T 2z81_A 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDL 341 (549)
T ss_dssp EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEEC
T ss_pred cccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEc
Confidence 3211 11111223457788888888888888776 36888888888
Q ss_pred cCCCCCCCCc---ccccCCCCCCCEEeccCCCCCCCc---cccccccCcceeecCCCCccccccchhCCCCCcEEEeccc
Q 001161 805 GRNRGLSLPI---TFSVDGLQNLRDLNLNDCGITELP---ESLGLLSLVTELHLEGNNFERIPESIIQLSNLEWLFIRYC 878 (1134)
Q Consensus 805 ~~n~~~~~~~---~~~~~~l~~L~~L~Ls~n~l~~lp---~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n 878 (1134)
++|. +.+.. ...+..+++|+.|+|++|+++.++ ..+..+++|++|+|++|+++.+|..+..+++|++|++++|
T Consensus 342 s~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N 420 (549)
T 2z81_A 342 SENL-MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST 420 (549)
T ss_dssp CSSC-CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTS
T ss_pred cCCc-cccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCC
Confidence 8887 44322 223567788888888888888765 3477788888888888888888877888888888888888
Q ss_pred cCCCccCCcCCCcCeEeccCCcccccccCCCCCCCCccceeeeccCCCCCCccccccchHHHHHHhHHHHHHhHHhhhhc
Q 001161 879 ERLQSLPKLPCNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDNFKLDPNDLGGIVKGALQKIQLLATARLKEAREK 958 (1134)
Q Consensus 879 ~~l~~lp~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~ 958 (1134)
++...-...+++|+.|++++|... .++ ..+++|+.|+|++| .++.+.+ ...+++|+.|+|++|+++
T Consensus 421 ~l~~l~~~~~~~L~~L~Ls~N~l~-~~~-----~~l~~L~~L~Ls~N------~l~~ip~--~~~l~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 421 GIRVVKTCIPQTLEVLDVSNNNLD-SFS-----LFLPRLQELYISRN------KLKTLPD--ASLFPVLLVMKISRNQLK 486 (549)
T ss_dssp CCSCCCTTSCTTCSEEECCSSCCS-CCC-----CCCTTCCEEECCSS------CCSSCCC--GGGCTTCCEEECCSSCCC
T ss_pred CcccccchhcCCceEEECCCCChh-hhc-----ccCChhcEEECCCC------ccCcCCC--cccCccCCEEecCCCccC
Confidence 755332334567888888876442 222 35667777777777 3333222 234666777777777766
Q ss_pred CCCC
Q 001161 959 ISYP 962 (1134)
Q Consensus 959 ~~~~ 962 (1134)
+..|
T Consensus 487 ~~~~ 490 (549)
T 2z81_A 487 SVPD 490 (549)
T ss_dssp CCCT
T ss_pred CcCH
Confidence 5433
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-33 Score=344.97 Aligned_cols=150 Identities=19% Similarity=0.134 Sum_probs=104.7
Q ss_pred ccccCcccccccCccccccCCCccEEEEecCCcccCcceeeccCCCC-cCeeEEEeecCCCCCCCCC-CC-CcccceEee
Q 001161 539 LLDMSKVKDINLHPNVFAKMPNLRILKFYNSMDEENKCKVSHFQGSE-FTEVRYLHWHGYPLKSLPS-NI-HPEKLVLLE 615 (1134)
Q Consensus 539 ~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~ 615 (1134)
.+|++++....+.+.+|.++++|+.|++++|.. ....+..+. +++|++|++++|.++.+|. .+ .+++|++|+
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i-----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-----QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCCC-----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCcC-----CccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 467777777777788888888888888877642 112223333 3788888888888887764 34 488888888
Q ss_pred CCCCCccccch-hhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCcc-CcCcc----cEEEec
Q 001161 616 MPYSNIEQLFD-IVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRI-HLELL----KELNLS 689 (1134)
Q Consensus 616 L~~n~i~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~-~l~~L----~~L~Ls 689 (1134)
+++|.++.++. .+..+++|++|++++|.. ..+..|..++++++|++|++++|.+.+..|..+ .+++| +.|+++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l-~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLI-QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCC-CCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ccccccccCCCccccccccccEEecCCCcc-ceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 88888888765 477888888888887753 333335678888888888888887766555544 35555 666666
Q ss_pred CCCCC
Q 001161 690 GCSKL 694 (1134)
Q Consensus 690 ~~~~l 694 (1134)
+|...
T Consensus 186 ~n~l~ 190 (570)
T 2z63_A 186 LNPMN 190 (570)
T ss_dssp TCCCC
T ss_pred CCCce
Confidence 66443
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=346.16 Aligned_cols=405 Identities=19% Similarity=0.178 Sum_probs=306.9
Q ss_pred ccccCcccccccCccccccCCCccEEEEecCCcccCcceeeccCCCCc-CeeEEEeecCCCCCCCCCC-C-CcccceEee
Q 001161 539 LLDMSKVKDINLHPNVFAKMPNLRILKFYNSMDEENKCKVSHFQGSEF-TEVRYLHWHGYPLKSLPSN-I-HPEKLVLLE 615 (1134)
Q Consensus 539 ~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~ 615 (1134)
.+|++++....+.+.+|.++++|++|++++|.. ....+..+.. ++|++|++++|.++.+|.. + .+++|++|+
T Consensus 56 ~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 130 (570)
T 2z63_A 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-----QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-----CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE
T ss_pred EEECCCCcCCccCcccccCchhCCEEeCcCCcC-----CccCHhhhcCccccccccccccccccCCCccccccccccEEe
Confidence 578888887888899999999999999988642 2222334433 9999999999999999873 3 599999999
Q ss_pred CCCCCccc--cchhhhccccchhhccccccCcCCCCCCCCCcCCCCC----cEEEccCCCCCcccCCccCcCcccEEEec
Q 001161 616 MPYSNIEQ--LFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKL----AILNLSGCGNLQSLPDRIHLELLKELNLS 689 (1134)
Q Consensus 616 L~~n~i~~--l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L----~~L~L~~~~~~~~lp~~~~l~~L~~L~Ls 689 (1134)
+++|.++. +|..+.++++|++|++++|.... .+ +..++.+++| +.|++++|.+.+..|..+...+|+.|+++
T Consensus 131 L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~-~~-~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 208 (570)
T 2z63_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IY-CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208 (570)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE-EC-GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred cCCCccceecChhhhcccCCCCEEeCcCCccce-ec-HHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecc
Confidence 99999986 68899999999999999986433 22 4567778888 89999999988887777766689999988
Q ss_pred CCCCC----------------------------------------------------------CCcccccC--CCcceeE
Q 001161 690 GCSKL----------------------------------------------------------KRLPEISS--GNIETMH 709 (1134)
Q Consensus 690 ~~~~l----------------------------------------------------------~~~~~~~~--~~L~~L~ 709 (1134)
+|... ...|.... ++|+.|+
T Consensus 209 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ 288 (570)
T 2z63_A 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288 (570)
T ss_dssp SCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEE
T ss_pred cccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEE
Confidence 86211 11111111 6788888
Q ss_pred ecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCccc
Q 001161 710 LDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIREL 789 (1134)
Q Consensus 710 L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~l 789 (1134)
+++|.+..+|..+..+ +|+.|++++|.+. .+|. ..+++|+.|++++|...+..+. ..+++|++|++++|.++.+
T Consensus 289 l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~ 362 (570)
T 2z63_A 289 LVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFK 362 (570)
T ss_dssp EESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEE
T ss_pred ecCccchhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcc
Confidence 8888888888877777 8888888888755 5554 4678888888888877666554 6778888888888888755
Q ss_pred ---CccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCc--cccccccCcceeecCCCCccc-cccc
Q 001161 790 ---PPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELP--ESLGLLSLVTELHLEGNNFER-IPES 863 (1134)
Q Consensus 790 ---p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~-lp~~ 863 (1134)
|..+..+++|+.|++++|. +....+. +..+++|+.|++++|.++.++ ..+..+++|++|+|++|.++. .|..
T Consensus 363 ~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 440 (570)
T 2z63_A 363 GCCSQSDFGTTSLKYLDLSFNG-VITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440 (570)
T ss_dssp EEEEHHHHTCSCCCEEECCSCS-EEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred ccccccccccCccCEEECCCCc-ccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhh
Confidence 5667788888888888886 4433333 778888888888888887653 357788888888888888874 5567
Q ss_pred hhCCCCCcEEEeccccCC-CccCC---cCCCcCeEeccCCcccccccCCCCCCCCccceeeeccCCCCCCccccccchHH
Q 001161 864 IIQLSNLEWLFIRYCERL-QSLPK---LPCNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDNFKLDPNDLGGIVKG 939 (1134)
Q Consensus 864 l~~l~~L~~L~Ls~n~~l-~~lp~---~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~~~~~ 939 (1134)
+.++++|+.|+|++|++. +.+|. .+++|+.|++++|......+..+ ..+++|+.|+|++| .++++.+.
T Consensus 441 ~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n------~l~~~~~~ 512 (570)
T 2z63_A 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMASN------QLKSVPDG 512 (570)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSS------CCSCCCTT
T ss_pred hhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhh--hcccCCCEEeCCCC------cCCCCCHH
Confidence 788888888888888876 45664 34678888888876654444333 46788888888887 67777777
Q ss_pred HHHHhHHHHHHhHHhhhhcCCCCCCCc
Q 001161 940 ALQKIQLLATARLKEAREKISYPSREG 966 (1134)
Q Consensus 940 ~~~~l~~L~~L~L~~n~~~~~~~~~~~ 966 (1134)
.+.++++|+.|++++|++++.+|...+
T Consensus 513 ~~~~l~~L~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 513 IFDRLTSLQKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp TTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred HhhcccCCcEEEecCCcccCCCcchHH
Confidence 788888888888888888877665443
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.1e-33 Score=352.95 Aligned_cols=345 Identities=19% Similarity=0.181 Sum_probs=289.3
Q ss_pred ceEeeCCC--CCccccchhhhccccchhhccccccCcCC------C---------CCCCCCc--CCCCCcEEEccCCCCC
Q 001161 611 LVLLEMPY--SNIEQLFDIVQNHGKLYQIITAAFNFFSK------T---------PTPLSTQ--HLNKLAILNLSGCGNL 671 (1134)
Q Consensus 611 L~~L~L~~--n~i~~l~~~~~~l~~L~~L~l~~~~~l~~------~---------~~~~~~~--~l~~L~~L~L~~~~~~ 671 (1134)
+..+.+.. |+++.+|..+.++++|+.|++++|..... . +.|..++ ++++|++|+|++|.+.
T Consensus 425 l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~ 504 (876)
T 4ecn_A 425 LKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504 (876)
T ss_dssp CCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC
T ss_pred hhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC
Confidence 33444443 78888999999999999999999885441 0 1355666 9999999999999999
Q ss_pred cccCCcc-CcCcccEEEecCCCCCC--CcccccC---------CCcceeEecCcCccccCc--cccCCCCCCeeeccCCc
Q 001161 672 QSLPDRI-HLELLKELNLSGCSKLK--RLPEISS---------GNIETMHLDGTALEELPS--SIECLSKLSRLDLADCK 737 (1134)
Q Consensus 672 ~~lp~~~-~l~~L~~L~Ls~~~~l~--~~~~~~~---------~~L~~L~L~~n~i~~lp~--~~~~l~~L~~L~L~~n~ 737 (1134)
+.+|..+ ++++|+.|+|++|..+. .+|.... ++|+.|+|++|.+..+|. .++++++|+.|+|++|.
T Consensus 505 ~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC
T ss_pred ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC
Confidence 9999877 69999999999998444 4664322 489999999999999999 89999999999999999
Q ss_pred CCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCC-CcEEEccCCcCcccCccccCCCC--CCEEEecCCCCCCCCc
Q 001161 738 SLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEA-LDSLHAVGTAIRELPPSIVRLKS--VRAIYFGRNRGLSLPI 814 (1134)
Q Consensus 738 ~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~-L~~L~L~~n~i~~lp~~~~~l~~--L~~L~l~~n~~~~~~~ 814 (1134)
+. .+| .+.++++|+.|+|++|.+. .+|..+..+++ |+.|+|++|.++.+|..+..++. |+.|++++|. +.+..
T Consensus 585 l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~-l~g~i 660 (876)
T 4ecn_A 585 VR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK-IGSEG 660 (876)
T ss_dssp CC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSC-TTTTS
T ss_pred cc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCc-CCCcc
Confidence 77 888 7999999999999999987 89999999999 99999999999999988877654 9999999998 44432
Q ss_pred cc---ccC--CCCCCCEEeccCCCCCCCccccc-cccCcceeecCCCCccccccchhCC--------CCCcEEEeccccC
Q 001161 815 TF---SVD--GLQNLRDLNLNDCGITELPESLG-LLSLVTELHLEGNNFERIPESIIQL--------SNLEWLFIRYCER 880 (1134)
Q Consensus 815 ~~---~~~--~l~~L~~L~Ls~n~l~~lp~~l~-~l~~L~~L~Ls~n~l~~lp~~l~~l--------~~L~~L~Ls~n~~ 880 (1134)
+. .+. .+++|+.|+|++|.++.+|..+. .+++|+.|+|++|+|+.+|..+... ++|+.|+|++|++
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L 740 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCC
T ss_pred ccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCC
Confidence 21 222 45589999999999999998764 7999999999999999999765543 3999999999987
Q ss_pred CCccCC-----cCCCcCeEeccCCcccccccCCCCCCCCccceeeeccCCCCCCccccccchHHHHHHhHHHHHHhHHhh
Q 001161 881 LQSLPK-----LPCNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDNFKLDPNDLGGIVKGALQKIQLLATARLKEA 955 (1134)
Q Consensus 881 l~~lp~-----~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~~~~~~~~~l~~L~~L~L~~n 955 (1134)
. .+|. .+++|+.|++++|.... +|..+ ..+++|+.|+|++|..+++|.+.+.+|..+.++++|+.|+|++|
T Consensus 741 ~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l--~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 741 T-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP--LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp C-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGG--GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred c-cchHHhhhccCCCcCEEEeCCCCCCc-cchhh--hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC
Confidence 7 6774 34799999999986644 55333 47899999999999889999999999999999999999999999
Q ss_pred hhcCCCCCC
Q 001161 956 REKISYPSR 964 (1134)
Q Consensus 956 ~~~~~~~~~ 964 (1134)
++ +.+|..
T Consensus 817 ~L-~~Ip~~ 824 (876)
T 4ecn_A 817 DI-RKVDEK 824 (876)
T ss_dssp CC-CBCCSC
T ss_pred CC-CccCHh
Confidence 98 655543
No 20
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=9.7e-33 Score=340.20 Aligned_cols=343 Identities=18% Similarity=0.230 Sum_probs=250.2
Q ss_pred cCCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHH---hccCC-ceeeeeechhHhhcCCH
Q 001161 186 TFQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKI---SRHFA-GSFFARNVREAEETGRL 261 (1134)
Q Consensus 186 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~---~~~f~-~~~~~~~~~~~~~~~~~ 261 (1134)
..|..+..||||+.++++|.++|....++.++|+|+||||+||||||++++++. +.+|+ .++|+. +...... .+
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~~~~-~~ 195 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQDKS-GL 195 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESCCHH-HH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCCchH-HH
Confidence 456677889999999999999998655678999999999999999999999743 78896 555653 3222111 11
Q ss_pred HHHHHHHHHHHhcCC----CCCCCccccHHHHHHhhcC--CcceEEEecCCChHHHHHHhcCcCCCCCCcEEEEEeCChh
Q 001161 262 GDLRQQLLSTLLNDG----NVKNFPNIDLNFQSKKLTR--KKVLIVFDDVNHPRQIKILVGRLDLLASGSRIIITTRDRQ 335 (1134)
Q Consensus 262 ~~l~~~ll~~l~~~~----~~~~~~~~~~~~l~~~L~~--k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIiiTTR~~~ 335 (1134)
..-..++...+.... ....+.+.....+++.+.+ +++||||||||+..+++.+ ++|++||||||++.
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGG
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcH
Confidence 111222333333211 1123334455667777765 7899999999998776543 67999999999998
Q ss_pred hhhhcCCCeEEEe---cCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHhcCCCHHHHHHHHH
Q 001161 336 VLANCGVDEVYQM---KELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLGRYLYGKRREVWENAIS 412 (1134)
Q Consensus 336 ~~~~~~~~~~~~l---~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~ 412 (1134)
++..++ ...|++ ++|+.+||++||...++.. .....+.+.+|+++|+|+||||+++|+.++.+. ..|...++
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~ 343 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLK 343 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHH
Confidence 876653 345666 4899999999999998642 223346789999999999999999999998664 36998888
Q ss_pred HHHcCCC-----------CchhhhhhhhhcCCCHHHHHHHHhhhcccCCCC--HHHHHHHhhhCCCchhcchHHhhccCC
Q 001161 413 KWETAPP-----------KGIQDALKISYDGLDDKEQNVFLDIACFFIDDD--RDTVTKFLDDCEFFATSGIEVLVDKHL 479 (1134)
Q Consensus 413 ~l~~~~~-----------~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~l~~~~~~~~~~~~~~i~~L~~~sL 479 (1134)
.+..... ..+..++..||+.|++++|.||+++|+||.+.. .+.+..+|......+...++.|+++||
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~L 423 (591)
T 1z6t_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSL 423 (591)
T ss_dssp HHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcC
Confidence 8875432 367889999999999999999999999998765 456778887665567788999999999
Q ss_pred eeEecC---CeEEEChhHHHHHHHHhhcc------------C-------CCCCCCcccccchhhHHHHhhcCCCcccccc
Q 001161 480 ITISVR---NKIKMHDLLRAMGREIVRQE------------S-------TNDPGKRSRLWHHKEVYKILSENRGTEAIEG 537 (1134)
Q Consensus 480 i~~~~~---~~~~mHdlv~~~~~~i~~~e------------~-------~~~~~~~srl~~~~~i~~~l~~~~~~~~i~~ 537 (1134)
|....+ .+|.||+++|+++++....+ . ...++.+.++|..+.+++++..+... .+..
T Consensus 424 l~~~~~~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~~~-~~~~ 502 (591)
T 1z6t_A 424 LFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMHK-ELCA 502 (591)
T ss_dssp SEEEEETTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTTCHH-HHHH
T ss_pred eEEecCCCccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcCCHH-HHHH
Confidence 987642 26999999999998872211 0 12233455667777777777665543 3445
Q ss_pred cccccC
Q 001161 538 ILLDMS 543 (1134)
Q Consensus 538 i~ldls 543 (1134)
+..++.
T Consensus 503 l~~~~~ 508 (591)
T 1z6t_A 503 LMFSLD 508 (591)
T ss_dssp HHSCHH
T ss_pred HHhCHH
Confidence 555544
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.9e-32 Score=347.25 Aligned_cols=412 Identities=14% Similarity=0.114 Sum_probs=311.3
Q ss_pred cccccccCcccccccCccccccCCCccEEEEecCCcccCcceeeccCCCCc-CeeEEEeecCCC-CCCC-CCCC-Ccccc
Q 001161 536 EGILLDMSKVKDINLHPNVFAKMPNLRILKFYNSMDEENKCKVSHFQGSEF-TEVRYLHWHGYP-LKSL-PSNI-HPEKL 611 (1134)
Q Consensus 536 ~~i~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~-l~~l-p~~~-~l~~L 611 (1134)
.+...|.+......++. -.++|+.|++++|.. ....+..+.. ++|++|++++|. +..+ |..+ ++++|
T Consensus 5 ~~~~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i-----~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L 75 (844)
T 3j0a_A 5 DGRIAFYRFCNLTQVPQ----VLNTTERLLLSFNYI-----RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNL 75 (844)
T ss_dssp TTEEEEESCCCSSCCCS----SCTTCCEEEEESCCC-----CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTC
T ss_pred eceEEEccCCCCCCCCC----CCCCcCEEECCCCcC-----CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCC
Confidence 34456666666666664 457999999998753 2223334443 999999999994 4566 5555 49999
Q ss_pred eEeeCCCCCcccc-chhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCC-cc-CcCcccEEEe
Q 001161 612 VLLEMPYSNIEQL-FDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPD-RI-HLELLKELNL 688 (1134)
Q Consensus 612 ~~L~L~~n~i~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~~-~l~~L~~L~L 688 (1134)
++|+|++|.+..+ |..+.++++|++|++++|......+....+.++++|++|+|++|.+.+..+. .+ ++++|++|+|
T Consensus 76 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 76 RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155 (844)
T ss_dssp CEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred CEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence 9999999999987 7789999999999999997665555555699999999999999998876553 34 7999999999
Q ss_pred cCCCCCCCcccccC----CCcceeEecCcCcc-ccCccccCCCC------CCeeeccCCcCCcccCcccC----------
Q 001161 689 SGCSKLKRLPEISS----GNIETMHLDGTALE-ELPSSIECLSK------LSRLDLADCKSLKSLPSGLC---------- 747 (1134)
Q Consensus 689 s~~~~l~~~~~~~~----~~L~~L~L~~n~i~-~lp~~~~~l~~------L~~L~L~~n~~~~~lp~~l~---------- 747 (1134)
++|......+.... .+|+.|++++|.+. ..|..++.+++ |+.|++++|.+.+..+..+.
T Consensus 156 s~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~ 235 (844)
T 3j0a_A 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235 (844)
T ss_dssp ESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSE
T ss_pred CCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccc
Confidence 99987665554433 78999999999998 45556666665 99999999976654443322
Q ss_pred --------------------------C--CCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCccc-CccccCCCC
Q 001161 748 --------------------------K--LKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIREL-PPSIVRLKS 798 (1134)
Q Consensus 748 --------------------------~--l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~ 798 (1134)
+ .++|+.|++++|.+.+..|..+..+++|+.|+|++|.++.+ |..+..+++
T Consensus 236 L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 315 (844)
T 3j0a_A 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315 (844)
T ss_dssp EECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSS
T ss_pred eecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCC
Confidence 1 26899999999998888889999999999999999999966 457888999
Q ss_pred CCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCcc-ccccccCcceeecCCCCccccccchhCCCCCcEEEecc
Q 001161 799 VRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPE-SLGLLSLVTELHLEGNNFERIPESIIQLSNLEWLFIRY 877 (1134)
Q Consensus 799 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~ 877 (1134)
|+.|++++|. +....+..+.++++|+.|+|++|.+..++. .+..+++|+.|+|++|.++.++. +++|+.|++++
T Consensus 316 L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~ 390 (844)
T 3j0a_A 316 LQVLNLSYNL-LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSG 390 (844)
T ss_dssp CCEEEEESCC-CSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEES
T ss_pred CCEEECCCCC-CCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCC
Confidence 9999999998 677777789999999999999999998765 58889999999999999987764 77888888888
Q ss_pred ccCCCccCCcCC-------------------------CcCeEeccCCcccccccCCCCCCCCccceeeeccCCCCCCccc
Q 001161 878 CERLQSLPKLPC-------------------------NLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDNFKLDPND 932 (1134)
Q Consensus 878 n~~l~~lp~~~~-------------------------~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~ 932 (1134)
|++. .+|.... +|+.|++++|......+.. ....+++|+.|+|++| .+....
T Consensus 391 N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~~L~~L~Ls~N-~l~~~~ 467 (844)
T 3j0a_A 391 NKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ-TPSENPSLEQLFLGEN-MLQLAW 467 (844)
T ss_dssp CCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS-SSCSCTTCCBCEEESC-CCSSSC
T ss_pred CCcc-cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc-ccccCCccccccCCCC-cccccc
Confidence 8765 4554444 4555555554332211111 1123556666666666 222111
Q ss_pred cccchHHHHHHhHHHHHHhHHhhhhcCCCCCC
Q 001161 933 LGGIVKGALQKIQLLATARLKEAREKISYPSR 964 (1134)
Q Consensus 933 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 964 (1134)
-.+..+..|.++++|+.|+|++|++++..|..
T Consensus 468 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 499 (844)
T 3j0a_A 468 ETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV 499 (844)
T ss_dssp CSCCCSSCSSCBCCEECCCCCHHHHTTCCTTS
T ss_pred ccccchhhhcCcccccEEECCCCcccccChhH
Confidence 12444566788899999999999999766543
No 22
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.3e-31 Score=334.23 Aligned_cols=250 Identities=20% Similarity=0.215 Sum_probs=116.1
Q ss_pred CCcceeEecCcCccccCc-cccCCCCCCeeeccCCcCCc-ccCc-ccC--CCCCCcEEeecCCCCCCCCCccccCCCCCc
Q 001161 703 GNIETMHLDGTALEELPS-SIECLSKLSRLDLADCKSLK-SLPS-GLC--KLKSLDVLNIDGCSNLQRLPEELGYLEALD 777 (1134)
Q Consensus 703 ~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~-~lp~-~l~--~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~ 777 (1134)
++|+.|++++|.+..++. .+..+++|++|++++|.... .++. .+. ..++|+.|++++|.+.+..|..+..+++|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 445555555555554433 24444444444444433110 0000 000 012233333333333333344455555555
Q ss_pred EEEccCCcCc-ccC-ccccCCCCCCEEEecCCCCCCCC--------------------------cccccCCCCCCCEEec
Q 001161 778 SLHAVGTAIR-ELP-PSIVRLKSVRAIYFGRNRGLSLP--------------------------ITFSVDGLQNLRDLNL 829 (1134)
Q Consensus 778 ~L~L~~n~i~-~lp-~~~~~l~~L~~L~l~~n~~~~~~--------------------------~~~~~~~l~~L~~L~L 829 (1134)
.|++++|.+. .+| ..+..+++|+.|++++|. +... .+..+..+++|+.|+|
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence 5555555554 233 234445555555555544 2222 2333444555555555
Q ss_pred cCCCCCCCcc-ccccccCcceeecCCCCcccccc---------chhCCCCCcEEEeccccCCCccCC----cCCCcCeEe
Q 001161 830 NDCGITELPE-SLGLLSLVTELHLEGNNFERIPE---------SIIQLSNLEWLFIRYCERLQSLPK----LPCNLIWLD 895 (1134)
Q Consensus 830 s~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~---------~l~~l~~L~~L~Ls~n~~l~~lp~----~~~~L~~L~ 895 (1134)
++|+++.+|. .+..+++|++|+|++|+++.++. .+.++++|+.|+|++|++. .+|. ..++|+.|+
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~ 566 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIID 566 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeE
Confidence 5555554433 24555555555555555554321 1445555555555555444 2331 223555555
Q ss_pred ccCCcccccccCCCCCCCCccceeeeccCCCCCCccccccchHHHHH-HhHHHHHHhHHhhhhcCCCC
Q 001161 896 AHHCTALESLPGLFPSSNESYLRTLYLSDNFKLDPNDLGGIVKGALQ-KIQLLATARLKEAREKISYP 962 (1134)
Q Consensus 896 l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~ 962 (1134)
+++|.. +.++.. ....+++|+.|+|++| .++++.+..+. .+++|+.|++++|++.+.++
T Consensus 567 Ls~N~l-~~l~~~-~~~~l~~L~~L~L~~N------~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 567 LGLNNL-NTLPAS-VFNNQVSLKSLNLQKN------LITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCSSCC-CCCCTT-TTTTCTTCCEEECTTS------CCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCCC-CcCCHh-HhCCCCCCCEEECCCC------cCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 555432 222211 0124455555555555 66666666666 66667777777776665443
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.7e-32 Score=339.83 Aligned_cols=405 Identities=18% Similarity=0.157 Sum_probs=240.9
Q ss_pred ccccCcccccccCccccccCCCccEEEEecCCcccCcceeeccCCCC-cCeeEEEeecCCCCCCCCCC-C-CcccceEee
Q 001161 539 LLDMSKVKDINLHPNVFAKMPNLRILKFYNSMDEENKCKVSHFQGSE-FTEVRYLHWHGYPLKSLPSN-I-HPEKLVLLE 615 (1134)
Q Consensus 539 ~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~ 615 (1134)
.+|++++....+.+..|.++++|++|++++|... ...+..+. +++|++|++++|.++.+|.. + .+++|++|+
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-----KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-----CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC-----ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 4677777777788888999999999999876421 11122222 28899999999999888874 4 588999999
Q ss_pred CCCCCccccc-hhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCcc---CcCcccEEEecCC
Q 001161 616 MPYSNIEQLF-DIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRI---HLELLKELNLSGC 691 (1134)
Q Consensus 616 L~~n~i~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~---~l~~L~~L~Ls~~ 691 (1134)
|++|.++.++ ..+..+++|++|++++|...... +..+.++++|++|+|++|.+.+..+..+ .+++|++|++++|
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK--LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC--CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccC--chhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 9999988876 46788889999999888643332 4567788888888888887766555433 4577888888887
Q ss_pred CCCCCccccc-----------------------------CCCcceeEecCcCcccc-CccccCCCC--CCeeeccCCcCC
Q 001161 692 SKLKRLPEIS-----------------------------SGNIETMHLDGTALEEL-PSSIECLSK--LSRLDLADCKSL 739 (1134)
Q Consensus 692 ~~l~~~~~~~-----------------------------~~~L~~L~L~~n~i~~l-p~~~~~l~~--L~~L~L~~n~~~ 739 (1134)
......|... ..+|+.|++++|.+..+ |..+..++. |+.|+|++|.+.
T Consensus 182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence 5433322211 02345555555554433 223444432 555555555544
Q ss_pred cccCcccCCCCCCcEEeecCCCCCCCCCccccC---------------------------------CCCCcEEEccCCcC
Q 001161 740 KSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGY---------------------------------LEALDSLHAVGTAI 786 (1134)
Q Consensus 740 ~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~---------------------------------l~~L~~L~L~~n~i 786 (1134)
+..|..+..+++|++|++++|.+.+..|..+.. +++|++|++++|.+
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l 341 (680)
T 1ziw_A 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc
Confidence 444444555555555555555544444444444 45555555555555
Q ss_pred cccCc-cccCCCCCCEEEecCCCCCCCC--cccccC--CCCCCCEEeccCCCCCCC-ccccccccCcceeecCCCCcc-c
Q 001161 787 RELPP-SIVRLKSVRAIYFGRNRGLSLP--ITFSVD--GLQNLRDLNLNDCGITEL-PESLGLLSLVTELHLEGNNFE-R 859 (1134)
Q Consensus 787 ~~lp~-~~~~l~~L~~L~l~~n~~~~~~--~~~~~~--~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~-~ 859 (1134)
..++. .+..+++|+.|++++|. .... ....+. ..++|+.|++++|+++.+ |..+..+++|+.|+|++|.++ .
T Consensus 342 ~~~~~~~~~~l~~L~~L~Ls~n~-~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 420 (680)
T 1ziw_A 342 PGIKSNMFTGLINLKYLSLSNSF-TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTCB-SCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEE
T ss_pred CCCChhHhccccCCcEEECCCCc-hhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccc
Confidence 53332 34445555555555443 1110 001111 113455555555555543 445666666666666666665 3
Q ss_pred cc-cchhCCCCCcEEEeccccCCCccCC---cCCCcCeEeccCCccc--ccccCCCCCCCCccceeeeccCCCCCCcccc
Q 001161 860 IP-ESIIQLSNLEWLFIRYCERLQSLPK---LPCNLIWLDAHHCTAL--ESLPGLFPSSNESYLRTLYLSDNFKLDPNDL 933 (1134)
Q Consensus 860 lp-~~l~~l~~L~~L~Ls~n~~l~~lp~---~~~~L~~L~l~~c~~l--~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l 933 (1134)
+| ..+.++++|++|++++|++....+. .+++|+.|++++|... ...|..+ ..+++|+.|+|++| .+
T Consensus 421 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~L~Ls~N------~l 492 (680)
T 1ziw_A 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTILDLSNN------NI 492 (680)
T ss_dssp CCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCEEECCSS------CC
T ss_pred cCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc--ccCCCCCEEECCCC------CC
Confidence 44 4566666666666666665443332 2345666666665432 2222222 35667777777776 66
Q ss_pred ccchHHHHHHhHHHHHHhHHhhhhcC
Q 001161 934 GGIVKGALQKIQLLATARLKEAREKI 959 (1134)
Q Consensus 934 ~~~~~~~~~~l~~L~~L~L~~n~~~~ 959 (1134)
+++.+.+|.++++|+.|++++|++++
T Consensus 493 ~~i~~~~~~~l~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 493 ANINDDMLEGLEKLEILDLQHNNLAR 518 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCGG
T ss_pred CcCChhhhccccccCEEeCCCCCccc
Confidence 66666667777777777777777664
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.8e-32 Score=332.97 Aligned_cols=399 Identities=14% Similarity=0.147 Sum_probs=245.2
Q ss_pred cccccCcccccccCccccccCCCccEEEEecCCcccCcceeeccCCCCc-CeeEEEeecCCCCCCCCCCCCcccceEeeC
Q 001161 538 ILLDMSKVKDINLHPNVFAKMPNLRILKFYNSMDEENKCKVSHFQGSEF-TEVRYLHWHGYPLKSLPSNIHPEKLVLLEM 616 (1134)
Q Consensus 538 i~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L 616 (1134)
..+|++++....+.+..|.++++|++|++++|.. ....+..+.. ++|++|++++|.++.+|.. .+++|++|+|
T Consensus 24 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L 97 (520)
T 2z7x_B 24 TILNISQNYISELWTSDILSLSKLRILIISHNRI-----QYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDL 97 (520)
T ss_dssp SEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC-----CEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEEC
T ss_pred cEEECCCCcccccChhhccccccccEEecCCCcc-----CCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEec
Confidence 3578888887778888899999999999988752 2222333333 8999999999999999888 8899999999
Q ss_pred CCCCccc--cchhhhccccchhhccccccCcCCCCCCCCCcCCCCC--cEEEccCCCC--CcccCCcc-CcC-cccEEEe
Q 001161 617 PYSNIEQ--LFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKL--AILNLSGCGN--LQSLPDRI-HLE-LLKELNL 688 (1134)
Q Consensus 617 ~~n~i~~--l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L--~~L~L~~~~~--~~~lp~~~-~l~-~L~~L~L 688 (1134)
++|.++. +|..+..+++|++|++++|.... ..+..+++| +.|+|++|.+ .+..|..+ .+. ....+++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch-----hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 9999987 46788899999999999876432 346777787 9999999887 56556544 222 2224455
Q ss_pred cCCCCCCCcccccC---CCcceeEecCcC-------ccccCccccCCC---------------------------CCCee
Q 001161 689 SGCSKLKRLPEISS---GNIETMHLDGTA-------LEELPSSIECLS---------------------------KLSRL 731 (1134)
Q Consensus 689 s~~~~l~~~~~~~~---~~L~~L~L~~n~-------i~~lp~~~~~l~---------------------------~L~~L 731 (1134)
++|.....++.... .+|+.|++++|. +....+.++.++ +|++|
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 55554444433221 455555555553 221112344444 45555
Q ss_pred eccCCcCCcccCccc-----CCCCCCcEEeecCCCCCCCCC-ccccCC---CCCcEEEccCCcCcccCccccCCCCCCEE
Q 001161 732 DLADCKSLKSLPSGL-----CKLKSLDVLNIDGCSNLQRLP-EELGYL---EALDSLHAVGTAIRELPPSIVRLKSVRAI 802 (1134)
Q Consensus 732 ~L~~n~~~~~lp~~l-----~~l~~L~~L~L~~~~~~~~~p-~~~~~l---~~L~~L~L~~n~i~~lp~~~~~l~~L~~L 802 (1134)
++++|.+.+.+|..+ .++++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+..++. ...+++|+.|
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 329 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHL 329 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEE
T ss_pred EeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccEE
Confidence 555555544555554 5555555555555554 333 223222 445666666655554331 1456666666
Q ss_pred EecCCCCCCCCcccccCCCCCCCEEeccCCCCCC---CccccccccCcceeecCCCCccc-cccc-hhCCCCCcEEEecc
Q 001161 803 YFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITE---LPESLGLLSLVTELHLEGNNFER-IPES-IIQLSNLEWLFIRY 877 (1134)
Q Consensus 803 ~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~---lp~~l~~l~~L~~L~Ls~n~l~~-lp~~-l~~l~~L~~L~Ls~ 877 (1134)
++++|. +....+..+..+++|++|+|++|+++. +|..++.+++|++|+|++|.++. +|.. +..+++|+.|++++
T Consensus 330 ~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 330 DFSNNL-LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp ECCSSC-CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred EeECCc-cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence 666665 444444555666666666666666664 33456666666666666666665 6643 55666666666666
Q ss_pred ccCCCccCCcC-CCcCeEeccCCcccccccCCCCCCCCccceeeeccCCCCCCccccccchHHHHHHhHHHHHHhHHhhh
Q 001161 878 CERLQSLPKLP-CNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDNFKLDPNDLGGIVKGALQKIQLLATARLKEAR 956 (1134)
Q Consensus 878 n~~l~~lp~~~-~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~ 956 (1134)
|++.+.+|... ++|+.|++++|.. ..+|..+ ..+++|+.|+|++| .++.+.+..+..+++|+.|++++|+
T Consensus 409 N~l~~~~~~~l~~~L~~L~Ls~N~l-~~ip~~~--~~l~~L~~L~L~~N------~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 409 NILTDTIFRCLPPRIKVLDLHSNKI-KSIPKQV--VKLEALQELNVASN------QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp SCCCGGGGGSCCTTCCEEECCSSCC-CCCCGGG--GGCTTCCEEECCSS------CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCcchhhhhcccCCEEECCCCcc-cccchhh--hcCCCCCEEECCCC------cCCccCHHHhccCCcccEEECcCCC
Confidence 66665555433 5666666666543 3444222 25566666666666 4444444345566666666666666
Q ss_pred hcCC
Q 001161 957 EKIS 960 (1134)
Q Consensus 957 ~~~~ 960 (1134)
+++.
T Consensus 480 ~~c~ 483 (520)
T 2z7x_B 480 WDCS 483 (520)
T ss_dssp BCCC
T ss_pred Cccc
Confidence 6553
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=6.6e-30 Score=305.30 Aligned_cols=320 Identities=21% Similarity=0.284 Sum_probs=198.1
Q ss_pred CeeEEEeecCCCCCCCCCCCCcccceEeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEcc
Q 001161 587 TEVRYLHWHGYPLKSLPSNIHPEKLVLLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLS 666 (1134)
Q Consensus 587 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~ 666 (1134)
++|++|++++|.++.+|....+++|++|++++|.+..++. +.++++|++|+|+
T Consensus 68 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------------------~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP---------------------------LANLTNLTGLTLF 120 (466)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG---------------------------GTTCTTCCEEECC
T ss_pred cCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh---------------------------hcCCCCCCEEECC
Confidence 5555555555555555442235555555555555554433 4445555555555
Q ss_pred CCCCCcccCCccCcCcccEEEecCCCCCCCcccccC-CCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcc
Q 001161 667 GCGNLQSLPDRIHLELLKELNLSGCSKLKRLPEISS-GNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSG 745 (1134)
Q Consensus 667 ~~~~~~~lp~~~~l~~L~~L~Ls~~~~l~~~~~~~~-~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~ 745 (1134)
+|.+.+. +...++++|++|++++|.. ..++.+.. .+|+.|+++ +.+..++. +.++++|+.|++++|.+.. ++ .
T Consensus 121 ~n~l~~~-~~~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~ 194 (466)
T 1o6v_A 121 NNQITDI-DPLKNLTNLNRLELSSNTI-SDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSD-IS-V 194 (466)
T ss_dssp SSCCCCC-GGGTTCTTCSEEEEEEEEE-CCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCC-CG-G
T ss_pred CCCCCCC-hHHcCCCCCCEEECCCCcc-CCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCCC-Ch-h
Confidence 5443332 2222455555555555432 22332222 455555553 33444433 6677777777777776443 22 3
Q ss_pred cCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCC
Q 001161 746 LCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLR 825 (1134)
Q Consensus 746 l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 825 (1134)
+..+++|++|++++|.+.+..| ++.+++|+.|++++|.++.++ .+..+++|+.|++++|. +....+ +..+++|+
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~ 268 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQ-ISNLAP--LSGLTKLT 268 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCS
T ss_pred hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCc-cccchh--hhcCCCCC
Confidence 6677777777777776655544 556777777777777777653 46667777777777776 444333 66777777
Q ss_pred EEeccCCCCCCCccccccccCcceeecCCCCccccccchhCCCCCcEEEeccccCCCccC-CcCCCcCeEeccCCccccc
Q 001161 826 DLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPESIIQLSNLEWLFIRYCERLQSLP-KLPCNLIWLDAHHCTALES 904 (1134)
Q Consensus 826 ~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp-~~~~~L~~L~l~~c~~l~~ 904 (1134)
.|++++|.++.++. +..+++|+.|+|++|+++.++. +..+++|+.|+|++|++.+..| ..+++|+.|++++|.. ..
T Consensus 269 ~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l-~~ 345 (466)
T 1o6v_A 269 ELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKV-SD 345 (466)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCC-CC
T ss_pred EEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCcc-CC
Confidence 77777777777665 6677777777777777777664 6777777777777777665544 2456777777777643 33
Q ss_pred ccCCCCCCCCccceeeeccCCCCCCccccccchHHHHHHhHHHHHHhHHhhhhcC
Q 001161 905 LPGLFPSSNESYLRTLYLSDNFKLDPNDLGGIVKGALQKIQLLATARLKEAREKI 959 (1134)
Q Consensus 905 ~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 959 (1134)
++ ....+++|+.|++++| .++++.| +..+++|+.|++++|++++
T Consensus 346 ~~---~l~~l~~L~~L~l~~n------~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 346 VS---SLANLTNINWLSAGHN------QISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CG---GGTTCTTCCEEECCSS------CCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ch---hhccCCCCCEEeCCCC------ccCccch--hhcCCCCCEEeccCCcccC
Confidence 33 1246788888888888 6677666 6778888888888888775
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=315.88 Aligned_cols=372 Identities=17% Similarity=0.151 Sum_probs=274.5
Q ss_pred cEEEEecCCcccCcceeeccCCCCcCeeEEEeecCCCCCCCCC-CC-CcccceEeeCCCCCcccc-chhhhccccchhhc
Q 001161 562 RILKFYNSMDEENKCKVSHFQGSEFTEVRYLHWHGYPLKSLPS-NI-HPEKLVLLEMPYSNIEQL-FDIVQNHGKLYQII 638 (1134)
Q Consensus 562 r~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~ 638 (1134)
++|+++++.. ...|..+. ++|++|++++|.++.+|. .+ .+++|++|+|++|+++.+ +..+..+++|++|+
T Consensus 3 ~~l~ls~n~l------~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 75 (520)
T 2z7x_B 3 FLVDRSKNGL------IHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD 75 (520)
T ss_dssp CEEECTTSCC------SSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEE
T ss_pred ceEecCCCCc------cccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEe
Confidence 5677776542 12343333 899999999999998874 33 589999999999999987 66788999999999
Q ss_pred cccccCcCCCCCCCCCcCCCCCcEEEccCCCCCc-ccCCcc-CcCcccEEEecCCCCCCCcccccCCCc--ceeEecCcC
Q 001161 639 TAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQ-SLPDRI-HLELLKELNLSGCSKLKRLPEISSGNI--ETMHLDGTA 714 (1134)
Q Consensus 639 l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~-~lp~~~-~l~~L~~L~Ls~~~~l~~~~~~~~~~L--~~L~L~~n~ 714 (1134)
+++|.. ..+|. . .+++|++|+|++|.+.+ .+|..+ ++++|++|++++|.... .......+| +.|++++|.
T Consensus 76 Ls~N~l-~~lp~--~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 76 LSHNKL-VKISC--H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CCSSCC-CEEEC--C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-GGGGGGTTSCEEEEEEEECT
T ss_pred cCCCce-eecCc--c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch-hhccccccceeeEEEeeccc
Confidence 999864 45443 2 79999999999998877 467666 69999999999986543 111112566 999999998
Q ss_pred c--c-ccCcccc--------------------------CCCCCCeeeccCCc-------CCcccCcccCCCC--------
Q 001161 715 L--E-ELPSSIE--------------------------CLSKLSRLDLADCK-------SLKSLPSGLCKLK-------- 750 (1134)
Q Consensus 715 i--~-~lp~~~~--------------------------~l~~L~~L~L~~n~-------~~~~lp~~l~~l~-------- 750 (1134)
+ . ..|..+. ++++|+.|++++|. ..+.+| .+..++
T Consensus 150 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~ 228 (520)
T 2z7x_B 150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLN 228 (520)
T ss_dssp TTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEE
T ss_pred ccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccc
Confidence 8 2 3344443 36677777777765 222232 233333
Q ss_pred -------------------CCcEEeecCCCCCCCCCccc-----cCCCCCcEEEccCCcCcccC-ccccCC---CCCCEE
Q 001161 751 -------------------SLDVLNIDGCSNLQRLPEEL-----GYLEALDSLHAVGTAIRELP-PSIVRL---KSVRAI 802 (1134)
Q Consensus 751 -------------------~L~~L~L~~~~~~~~~p~~~-----~~l~~L~~L~L~~n~i~~lp-~~~~~l---~~L~~L 802 (1134)
+|++|++++|.+.+.+|..+ +.+++|+.+++++|.+ .+| ..+..+ .+|+.|
T Consensus 229 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L 307 (520)
T 2z7x_B 229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNF 307 (520)
T ss_dssp EEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEE
T ss_pred ccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEE
Confidence 56666666666666677766 7777777777777777 666 344433 668888
Q ss_pred EecCCCCCCCCcccccCCCCCCCEEeccCCCCCC-CccccccccCcceeecCCCCccc---cccchhCCCCCcEEEeccc
Q 001161 803 YFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITE-LPESLGLLSLVTELHLEGNNFER---IPESIIQLSNLEWLFIRYC 878 (1134)
Q Consensus 803 ~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~---lp~~l~~l~~L~~L~Ls~n 878 (1134)
++++|...... ....+++|++|++++|.++. +|..++.+++|++|+|++|+++. +|..+..+++|+.|+|++|
T Consensus 308 ~l~~n~l~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 308 TVSGTRMVHML---CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp EEESSCCCCCC---CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred EcCCCcccccc---chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC
Confidence 88877632221 12688999999999999997 78889999999999999999995 5567999999999999999
Q ss_pred cCCCccCC----cCCCcCeEeccCCcccccccCCCCCCCCccceeeeccCCCCCCccccccchHHHHHHhHHHHHHhHHh
Q 001161 879 ERLQSLPK----LPCNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDNFKLDPNDLGGIVKGALQKIQLLATARLKE 954 (1134)
Q Consensus 879 ~~l~~lp~----~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~~~~~~~~~l~~L~~L~L~~ 954 (1134)
++.+.+|. .+++|+.|++++|......+..++ ++|+.|+|++| .++.+.+ .+..+++|+.|++++
T Consensus 385 ~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~----~~L~~L~Ls~N------~l~~ip~-~~~~l~~L~~L~L~~ 453 (520)
T 2z7x_B 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP----PRIKVLDLHSN------KIKSIPK-QVVKLEALQELNVAS 453 (520)
T ss_dssp CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC----TTCCEEECCSS------CCCCCCG-GGGGCTTCCEEECCS
T ss_pred cCCcccccchhccCccCCEEECcCCCCCcchhhhhc----ccCCEEECCCC------cccccch-hhhcCCCCCEEECCC
Confidence 99886763 357999999999987665554332 68999999999 6665444 445899999999999
Q ss_pred hhhcCCCCC
Q 001161 955 AREKISYPS 963 (1134)
Q Consensus 955 n~~~~~~~~ 963 (1134)
|+++. +|.
T Consensus 454 N~l~~-l~~ 461 (520)
T 2z7x_B 454 NQLKS-VPD 461 (520)
T ss_dssp SCCCC-CCT
T ss_pred CcCCc-cCH
Confidence 98873 443
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=8.3e-31 Score=312.68 Aligned_cols=363 Identities=16% Similarity=0.134 Sum_probs=290.7
Q ss_pred EEEeecCCCCCCCCCCCCcccceEeeCCCCCcccc-chhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCC
Q 001161 590 RYLHWHGYPLKSLPSNIHPEKLVLLEMPYSNIEQL-FDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGC 668 (1134)
Q Consensus 590 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~ 668 (1134)
+.++.+++.++.+|. -+++|++|+|++|.++.+ +..+..+++|++|++++|.....++ +..|..+++|++|+|++|
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~-~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR-NNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEEC-TTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceEC-cccccccccCCEEeCCCC
Confidence 357778888999998 458999999999999987 6678899999999999987644443 567899999999999999
Q ss_pred CCCcccCCcc-CcCcccEEEecCCCCCCCcccc--cC--CCcceeEecCcCcccc-Ccc-ccCCCCCCeeeccCCcCCcc
Q 001161 669 GNLQSLPDRI-HLELLKELNLSGCSKLKRLPEI--SS--GNIETMHLDGTALEEL-PSS-IECLSKLSRLDLADCKSLKS 741 (1134)
Q Consensus 669 ~~~~~lp~~~-~l~~L~~L~Ls~~~~l~~~~~~--~~--~~L~~L~L~~n~i~~l-p~~-~~~l~~L~~L~L~~n~~~~~ 741 (1134)
.+.+..|..+ ++++|++|+|++|......+.. .. .+|++|+|++|.+..+ |.. +.++++|++|++++|.+.+.
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 9888878777 6999999999999776544432 22 7999999999999977 444 88999999999999998888
Q ss_pred cCcccCCC--CCCcEEeecCCCCCCCCCcc--------ccCCCCCcEEEccCCcCc-ccCccccC---CCCCCEEEecCC
Q 001161 742 LPSGLCKL--KSLDVLNIDGCSNLQRLPEE--------LGYLEALDSLHAVGTAIR-ELPPSIVR---LKSVRAIYFGRN 807 (1134)
Q Consensus 742 lp~~l~~l--~~L~~L~L~~~~~~~~~p~~--------~~~l~~L~~L~L~~n~i~-~lp~~~~~---l~~L~~L~l~~n 807 (1134)
.|..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|.++ ..|..+.. .++|+.|++++|
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 88777766 78999999999877654433 336689999999999998 44554443 388999999988
Q ss_pred CCCCC---------CcccccC--CCCCCCEEeccCCCCCC-CccccccccCcceeecCCCCcccc-ccchhCCCCCcEEE
Q 001161 808 RGLSL---------PITFSVD--GLQNLRDLNLNDCGITE-LPESLGLLSLVTELHLEGNNFERI-PESIIQLSNLEWLF 874 (1134)
Q Consensus 808 ~~~~~---------~~~~~~~--~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~ 874 (1134)
..... .....+. ..++|+.|++++|.++. .|..++.+++|++|+|++|+++.+ |..+.++++|+.|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 329 (455)
T 3v47_A 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329 (455)
T ss_dssp TTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEE
Confidence 52221 1111222 23689999999999996 467789999999999999999976 56889999999999
Q ss_pred eccccCCCccCC---cCCCcCeEeccCCcccccccCCCCCCCCccceeeeccCCCCCCccccccchHHHHHHhHHHHHHh
Q 001161 875 IRYCERLQSLPK---LPCNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDNFKLDPNDLGGIVKGALQKIQLLATAR 951 (1134)
Q Consensus 875 Ls~n~~l~~lp~---~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~~~~~~~~~l~~L~~L~ 951 (1134)
|++|.+.+..|. .+++|+.|++++|......+..+ ..+++|++|+|++| .++++.+..+..+++|+.|+
T Consensus 330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N------~l~~~~~~~~~~l~~L~~L~ 401 (455)
T 3v47_A 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF--LGLPNLKELALDTN------QLKSVPDGIFDRLTSLQKIW 401 (455)
T ss_dssp CCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSS------CCSCCCTTTTTTCTTCCEEE
T ss_pred CCCCccCCcChhHhcCcccCCEEECCCCcccccChhhc--cccccccEEECCCC------ccccCCHhHhccCCcccEEE
Confidence 999988666554 35789999999987655445443 57899999999998 77787777888999999999
Q ss_pred HHhhhhcCCCCC
Q 001161 952 LKEAREKISYPS 963 (1134)
Q Consensus 952 L~~n~~~~~~~~ 963 (1134)
+++|++++.+|.
T Consensus 402 l~~N~l~~~~~~ 413 (455)
T 3v47_A 402 LHTNPWDCSCPR 413 (455)
T ss_dssp CCSSCBCCCTTT
T ss_pred ccCCCcccCCCc
Confidence 999999987664
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=4.2e-30 Score=304.23 Aligned_cols=366 Identities=20% Similarity=0.179 Sum_probs=260.0
Q ss_pred cccCcccccccCccccccCCCccEEEEecCCcccCcceeeccCCCCc-C-------------eeEEEeecCCCCCCCCCC
Q 001161 540 LDMSKVKDINLHPNVFAKMPNLRILKFYNSMDEENKCKVSHFQGSEF-T-------------EVRYLHWHGYPLKSLPSN 605 (1134)
Q Consensus 540 ldls~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~-------------~L~~L~l~~~~l~~lp~~ 605 (1134)
++++.+..-.+ |..|+++++|++|+++++.. ....|..+.. . ++++|++++|.++.+|..
T Consensus 16 L~l~~n~l~~i-P~~i~~L~~L~~L~l~~n~~-----~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 16 PLRHSSNLTEM-PVEAENVKSKTEYYNAWSEW-----ERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp -------------------CCHHHHHHHHHHH-----HHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred hhcccCchhhC-ChhHhcccchhhhhccCCcc-----cccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 44455444333 55689999999999977532 1233443332 3 369999999999999983
Q ss_pred CCcccceEeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCccCcCcccE
Q 001161 606 IHPEKLVLLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRIHLELLKE 685 (1134)
Q Consensus 606 ~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~ 685 (1134)
+++|++|++++|.++.+|.. +.+|+.|++++|. +..++. ..++|++|++++|.+.+ +|...++++|++
T Consensus 90 --~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~-----~~~~L~~L~L~~n~l~~-lp~~~~l~~L~~ 157 (454)
T 1jl5_A 90 --PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSD-----LPPLLEYLGVSNNQLEK-LPELQNSSFLKI 157 (454)
T ss_dssp --CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCS-----CCTTCCEEECCSSCCSS-CCCCTTCTTCCE
T ss_pred --cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccC-----CCCCCCEEECcCCCCCC-CcccCCCCCCCE
Confidence 68999999999999998754 4789999998875 333321 12799999999998776 886557999999
Q ss_pred EEecCCCCCCCcccccCCCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCC
Q 001161 686 LNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQR 765 (1134)
Q Consensus 686 L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 765 (1134)
|++++|... .+|... .+|++|++++|.++.+| .++.+++|+.|++++|.+.+ +|.. .++|++|++++|.+. .
T Consensus 158 L~l~~N~l~-~lp~~~-~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~ 229 (454)
T 1jl5_A 158 IDVDNNSLK-KLPDLP-PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-E 229 (454)
T ss_dssp EECCSSCCS-CCCCCC-TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-S
T ss_pred EECCCCcCc-ccCCCc-ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-c
Confidence 999998644 466543 59999999999999998 59999999999999998665 5542 368999999999876 6
Q ss_pred CCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCcccccccc
Q 001161 766 LPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESLGLLS 845 (1134)
Q Consensus 766 ~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~ 845 (1134)
+|. ++.+++|++|++++|.++.+|.. +++|+.|++++|. +..... .+++|+.|++++|.++.+|.. .+
T Consensus 230 lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~-l~~l~~----~~~~L~~L~ls~N~l~~l~~~---~~ 297 (454)
T 1jl5_A 230 LPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNY-LTDLPE----LPQSLTFLDVSENIFSGLSEL---PP 297 (454)
T ss_dssp CCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSEESCC---CT
T ss_pred ccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCc-ccccCc----ccCcCCEEECcCCccCcccCc---CC
Confidence 774 88999999999999999988864 4899999999998 444221 248899999999999987642 37
Q ss_pred CcceeecCCCCccccccchhCCCCCcEEEeccccCCCccCCcCCCcCeEeccCCcccccccCCCCCCCCccceeeeccCC
Q 001161 846 LVTELHLEGNNFERIPESIIQLSNLEWLFIRYCERLQSLPKLPCNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDN 925 (1134)
Q Consensus 846 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n 925 (1134)
+|+.|++++|+++.++.. .++|+.|++++|++.+ +|..+++|+.|++++|.. ..+|. .+++|+.|++++|
T Consensus 298 ~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~-lp~~~~~L~~L~L~~N~l-~~lp~-----~l~~L~~L~L~~N 367 (454)
T 1jl5_A 298 NLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIE-LPALPPRLERLIASFNHL-AEVPE-----LPQNLKQLHVEYN 367 (454)
T ss_dssp TCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCC-SCCCC-----CCTTCCEEECCSS
T ss_pred cCCEEECcCCcCCcccCC---cCcCCEEECCCCcccc-ccccCCcCCEEECCCCcc-ccccc-----hhhhccEEECCCC
Confidence 899999999999987632 2589999999998765 888889999999999754 45553 4678999999998
Q ss_pred CCCCcccccc--chHHHHHHh-------------HHHHHHhHHhhhhcC
Q 001161 926 FKLDPNDLGG--IVKGALQKI-------------QLLATARLKEAREKI 959 (1134)
Q Consensus 926 ~~L~~~~l~~--~~~~~~~~l-------------~~L~~L~L~~n~~~~ 959 (1134)
.+++ .+|..+..+ ++|+.|++++|++++
T Consensus 368 ------~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 368 ------PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp ------CCSSCCCCCTTCCEEECCC------------------------
T ss_pred ------CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 4444 233333333 789999999999876
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.1e-30 Score=319.73 Aligned_cols=420 Identities=15% Similarity=0.144 Sum_probs=309.8
Q ss_pred cccCcccccccCccccccCCCccEEEEecCCcccCcceeeccCCCC-cCeeEEEeecCCCCCCCCC-CC-CcccceEeeC
Q 001161 540 LDMSKVKDINLHPNVFAKMPNLRILKFYNSMDEENKCKVSHFQGSE-FTEVRYLHWHGYPLKSLPS-NI-HPEKLVLLEM 616 (1134)
Q Consensus 540 ldls~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L 616 (1134)
+|.+.+....++...+ ++|+.|++++|.. ....+..+. +++|++|++++|.++.+|. .+ .+++|++|+|
T Consensus 10 c~~~~~~l~~ip~~~~---~~L~~L~Ls~n~l-----~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT---AAMKSLDLSFNKI-----TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSCCSSCCSCCC---TTCCEEECCSSCC-----CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred EECCCCccccccccCC---CCccEEECcCCcc-----CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4555555556665444 7899999998752 222233343 3999999999999998875 34 5899999999
Q ss_pred CCCCccccchh-hhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCC-cc-CcCcccEEEecCCCC
Q 001161 617 PYSNIEQLFDI-VQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPD-RI-HLELLKELNLSGCSK 693 (1134)
Q Consensus 617 ~~n~i~~l~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~~-~l~~L~~L~Ls~~~~ 693 (1134)
++|.++.++.. +..+++|++|++++|.. ...+.+..++.+++|++|++++|...+.+|. .+ ++++|++|++++|..
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPY-QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcc-cccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 99999998765 88999999999999864 4434466899999999999999997777764 34 799999999999987
Q ss_pred CCCcccccC--CCcceeEecCcCccccCcc-ccCCCCCCeeeccCCcCCccc--C-cccCCCCCCcEEeecCCCCCCCC-
Q 001161 694 LKRLPEISS--GNIETMHLDGTALEELPSS-IECLSKLSRLDLADCKSLKSL--P-SGLCKLKSLDVLNIDGCSNLQRL- 766 (1134)
Q Consensus 694 l~~~~~~~~--~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~l--p-~~l~~l~~L~~L~L~~~~~~~~~- 766 (1134)
....|.... .+|+.|++++|.+..+|.. +..+++|++|++++|.+.+.. | .....+++|+.|++++|.+.+..
T Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 240 (549)
T 2z81_A 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240 (549)
T ss_dssp CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred cccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH
Confidence 666665544 7899999999999988876 467999999999999977642 2 22346889999999999776533
Q ss_pred ---CccccCCCCCcEEEccCCcCcccCc-------c-----------------------------ccCCCCCCEEEecCC
Q 001161 767 ---PEELGYLEALDSLHAVGTAIRELPP-------S-----------------------------IVRLKSVRAIYFGRN 807 (1134)
Q Consensus 767 ---p~~~~~l~~L~~L~L~~n~i~~lp~-------~-----------------------------~~~l~~L~~L~l~~n 807 (1134)
+..+..+++|+.|++++|.+..++. . ...+++|+.|++++|
T Consensus 241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n 320 (549)
T 2z81_A 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320 (549)
T ss_dssp HHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS
T ss_pred HHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC
Confidence 3344567788888888776653321 0 122356777777777
Q ss_pred CCCCCCcccccCCCCCCCEEeccCCCCCC-Cc---cccccccCcceeecCCCCccccc---cchhCCCCCcEEEeccccC
Q 001161 808 RGLSLPITFSVDGLQNLRDLNLNDCGITE-LP---ESLGLLSLVTELHLEGNNFERIP---ESIIQLSNLEWLFIRYCER 880 (1134)
Q Consensus 808 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-lp---~~l~~l~~L~~L~Ls~n~l~~lp---~~l~~l~~L~~L~Ls~n~~ 880 (1134)
. +.......+..+++|++|+|++|.++. +| ..++.+++|++|+|++|+++.+| ..+..+++|++|+|++|++
T Consensus 321 ~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 399 (549)
T 2z81_A 321 K-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399 (549)
T ss_dssp C-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred c-cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC
Confidence 6 433222233578899999999999885 33 34678899999999999998776 3588899999999999976
Q ss_pred CCccCC---cCCCcCeEeccCCcccccccCCCCCCCCccceeeeccCCCCCCccccccchHHHHHHhHHHHHHhHHhhhh
Q 001161 881 LQSLPK---LPCNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDNFKLDPNDLGGIVKGALQKIQLLATARLKEARE 957 (1134)
Q Consensus 881 l~~lp~---~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~~ 957 (1134)
. .+|. .+++|++|++++|. +..+++.+ .++|+.|+|++| .++++. ..+++|++|+|++|++
T Consensus 400 ~-~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~----~~~L~~L~Ls~N------~l~~~~----~~l~~L~~L~Ls~N~l 463 (549)
T 2z81_A 400 H-PMPDSCQWPEKMRFLNLSSTG-IRVVKTCI----PQTLEVLDVSNN------NLDSFS----LFLPRLQELYISRNKL 463 (549)
T ss_dssp C-CCCSCCCCCTTCCEEECTTSC-CSCCCTTS----CTTCSEEECCSS------CCSCCC----CCCTTCCEEECCSSCC
T ss_pred c-cCChhhcccccccEEECCCCC-cccccchh----cCCceEEECCCC------Chhhhc----ccCChhcEEECCCCcc
Confidence 6 5664 45789999999976 44555443 357899999998 555543 3688999999999998
Q ss_pred cCCCCCCCceEEecCCCCCccccccCCCceEEEEcCCC
Q 001161 958 KISYPSREGRGFLPWNEIPKWFSFQSAGSCVTLEMPPD 995 (1134)
Q Consensus 958 ~~~~~~~~~~~~~pg~~iP~~~~~~~~g~~~~~~lp~~ 995 (1134)
+ .+|... ..|..-.....+|.++. +|+.
T Consensus 464 ~-~ip~~~--------~l~~L~~L~Ls~N~l~~-~~~~ 491 (549)
T 2z81_A 464 K-TLPDAS--------LFPVLLVMKISRNQLKS-VPDG 491 (549)
T ss_dssp S-SCCCGG--------GCTTCCEEECCSSCCCC-CCTT
T ss_pred C-cCCCcc--------cCccCCEEecCCCccCC-cCHH
Confidence 7 455421 23444444556666664 4444
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=3.1e-30 Score=316.02 Aligned_cols=379 Identities=16% Similarity=0.126 Sum_probs=252.5
Q ss_pred CCccEEEEecCCcccCcceeeccCCCCcCeeEEEeecCCCCCCCCC-CC-CcccceEeeCCCCCcccc-chhhhccccch
Q 001161 559 PNLRILKFYNSMDEENKCKVSHFQGSEFTEVRYLHWHGYPLKSLPS-NI-HPEKLVLLEMPYSNIEQL-FDIVQNHGKLY 635 (1134)
Q Consensus 559 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~ 635 (1134)
...++++++++.. ...|..+ .++|++|++++|.++.+|. .+ .+++|++|+|++|.++.+ +..+..+++|+
T Consensus 31 ~~~~~l~ls~~~L------~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 31 ELESMVDYSNRNL------THVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLE 103 (562)
T ss_dssp --CCEEECTTSCC------CSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred CCCcEEEcCCCCC------ccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCC
Confidence 3447888877542 1233322 2789999999999998874 34 588999999999999987 56688899999
Q ss_pred hhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCc-ccCCcc-CcCcccEEEecCCCCCCCcccccCCCc--ceeEec
Q 001161 636 QIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQ-SLPDRI-HLELLKELNLSGCSKLKRLPEISSGNI--ETMHLD 711 (1134)
Q Consensus 636 ~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~-~lp~~~-~l~~L~~L~Ls~~~~l~~~~~~~~~~L--~~L~L~ 711 (1134)
+|++++|.. ..+|. . .+++|++|+|++|.+.+ .+|..+ ++++|++|++++|.... .......+| +.|+++
T Consensus 104 ~L~Ls~N~l-~~lp~--~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 104 YLDVSHNRL-QNISC--C--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPVAHLHLSCILLD 177 (562)
T ss_dssp EEECTTSCC-CEECS--C--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TTTGGGTTSCEEEEEEE
T ss_pred EEECCCCcC-CccCc--c--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-CchhhhhhceeeEEEee
Confidence 999998764 45543 2 78999999999988776 345555 68999999999976543 111111445 999999
Q ss_pred CcCc--c-ccCcccc--------------------------CCCCCCeeeccCCcCC-----------------------
Q 001161 712 GTAL--E-ELPSSIE--------------------------CLSKLSRLDLADCKSL----------------------- 739 (1134)
Q Consensus 712 ~n~i--~-~lp~~~~--------------------------~l~~L~~L~L~~n~~~----------------------- 739 (1134)
+|.+ . ..|..+. .+++|+.|++++|...
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence 9887 3 2233333 2345555555554200
Q ss_pred -----c----ccCcccCCCCCCcEEeecCCCCCCCCCccc-----cCCC--------------------------CCcEE
Q 001161 740 -----K----SLPSGLCKLKSLDVLNIDGCSNLQRLPEEL-----GYLE--------------------------ALDSL 779 (1134)
Q Consensus 740 -----~----~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~-----~~l~--------------------------~L~~L 779 (1134)
+ .++..+ ..++|++|++++|.+.+.+|..+ .+++ +|+.|
T Consensus 258 ~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 258 HIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEE
T ss_pred CCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEE
Confidence 0 000000 12366666666666666666554 3333 35555
Q ss_pred EccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCc---cccccccCcceeecCCCC
Q 001161 780 HAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELP---ESLGLLSLVTELHLEGNN 856 (1134)
Q Consensus 780 ~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp---~~l~~l~~L~~L~Ls~n~ 856 (1134)
++++|.+..++. ...+++|+.|++++|. +....+..+.++++|+.|+|++|+++.++ ..++.+++|++|+|++|+
T Consensus 337 ~l~~n~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 337 SISDTPFIHMVC-PPSPSSFTFLNFTQNV-FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp EEESSCCCCCCC-CSSCCCCCEEECCSSC-CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred EccCCCcccccC-ccCCCCceEEECCCCc-cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 555555543321 1567788888888887 55555666778888888888888887654 457778888888888888
Q ss_pred ccc-cccc-hhCCCCCcEEEeccccCCCccCCcC-CCcCeEeccCCcccccccCCCCCCCCccceeeeccCCCCCCcccc
Q 001161 857 FER-IPES-IIQLSNLEWLFIRYCERLQSLPKLP-CNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDNFKLDPNDL 933 (1134)
Q Consensus 857 l~~-lp~~-l~~l~~L~~L~Ls~n~~l~~lp~~~-~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l 933 (1134)
++. +|.. +..+++|+.|++++|++.+.+|... ++|+.|++++|. ++.+|..+ ..+++|+.|+|++| .+
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~-l~~ip~~~--~~l~~L~~L~L~~N------~l 485 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNR-IMSIPKDV--THLQALQELNVASN------QL 485 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSC-CCCCCTTT--TSSCCCSEEECCSS------CC
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCc-CcccChhh--cCCCCCCEEECCCC------CC
Confidence 875 7753 6677888888888888777766544 578888888874 44555433 26778888888877 56
Q ss_pred ccchHHHHHHhHHHHHHhHHhhhhcCCCC
Q 001161 934 GGIVKGALQKIQLLATARLKEAREKISYP 962 (1134)
Q Consensus 934 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 962 (1134)
+.+.+..+..+++|+.|++++|++.+.++
T Consensus 486 ~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 486 KSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 65555457777888888888887776444
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=2.5e-28 Score=291.65 Aligned_cols=333 Identities=17% Similarity=0.226 Sum_probs=220.3
Q ss_pred cccCcccccccCccccccCCCccEEEEecCCcccCcceeeccCCCCcCeeEEEeecCCCCCCCCCCCCcccceEeeCCCC
Q 001161 540 LDMSKVKDINLHPNVFAKMPNLRILKFYNSMDEENKCKVSHFQGSEFTEVRYLHWHGYPLKSLPSNIHPEKLVLLEMPYS 619 (1134)
Q Consensus 540 ldls~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n 619 (1134)
+++.++....++ .|..+++|+.|++++|.... .+....+++|++|++++|.+..+|....+++|++|++++|
T Consensus 51 L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n 122 (466)
T 1o6v_A 51 LQADRLGIKSID--GVEYLNNLTQINFSNNQLTD------ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 122 (466)
T ss_dssp EECCSSCCCCCT--TGGGCTTCCEEECCSSCCCC------CGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred EecCCCCCccCc--chhhhcCCCEEECCCCccCC------chhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCC
Confidence 455555544444 48899999999999875321 1222234899999999999999988556999999999999
Q ss_pred CccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCccCcCcccEEEecCCCCCCCccc
Q 001161 620 NIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRIHLELLKELNLSGCSKLKRLPE 699 (1134)
Q Consensus 620 ~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~Ls~~~~l~~~~~ 699 (1134)
.++.++. +..+++|++|++++|.. ..+ ..+..+++|++|++++ ... .++...++++|++|++++|.. ..++.
T Consensus 123 ~l~~~~~-~~~l~~L~~L~l~~n~l-~~~---~~~~~l~~L~~L~l~~-~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~ 194 (466)
T 1o6v_A 123 QITDIDP-LKNLTNLNRLELSSNTI-SDI---SALSGLTSLQQLSFGN-QVT-DLKPLANLTTLERLDISSNKV-SDISV 194 (466)
T ss_dssp CCCCCGG-GTTCTTCSEEEEEEEEE-CCC---GGGTTCTTCSEEEEEE-SCC-CCGGGTTCTTCCEEECCSSCC-CCCGG
T ss_pred CCCCChH-HcCCCCCCEEECCCCcc-CCC---hhhccCCcccEeecCC-ccc-CchhhccCCCCCEEECcCCcC-CCChh
Confidence 9999865 78889999999988763 333 2478888999998864 333 333344688888888888763 33333
Q ss_pred ccC-CCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcE
Q 001161 700 ISS-GNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDS 778 (1134)
Q Consensus 700 ~~~-~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~ 778 (1134)
+.. ++|+.|++++|.+..++. ++.+++|+.|++++|.+.. + ..+..+++|++|++++|.+.+..+ +..+++|+.
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 269 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 269 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred hccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCE
Confidence 333 667777777777666554 5666777777777766443 2 235666777777777766554433 666677777
Q ss_pred EEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccccccccCcceeecCCCCcc
Q 001161 779 LHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFE 858 (1134)
Q Consensus 779 L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 858 (1134)
|++++|.++.++. +..+++|+.|++++|. +....+ +..+++|+.|+|++|+++.++. +..+++|+.|++++|+++
T Consensus 270 L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 270 LKLGANQISNISP-LAGLTALTNLELNENQ-LEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp EECCSSCCCCCGG-GTTCTTCSEEECCSSC-CSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCC
T ss_pred EECCCCccCcccc-ccCCCccCeEEcCCCc-ccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccC
Confidence 7777776666554 5666667777776665 333322 5566666666776666666544 556666666666666666
Q ss_pred ccccchhCCCCCcEEEeccccCCCccC-CcCCCcCeEeccCC
Q 001161 859 RIPESIIQLSNLEWLFIRYCERLQSLP-KLPCNLIWLDAHHC 899 (1134)
Q Consensus 859 ~lp~~l~~l~~L~~L~Ls~n~~l~~lp-~~~~~L~~L~l~~c 899 (1134)
.++ .+.++++|+.|++++|++.+..| ..+++|+.|++++|
T Consensus 345 ~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 345 DVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 385 (466)
T ss_dssp CCG-GGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCE
T ss_pred Cch-hhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCC
Confidence 654 56666666666666666554443 12234444444444
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=1.9e-28 Score=290.31 Aligned_cols=361 Identities=16% Similarity=0.128 Sum_probs=274.5
Q ss_pred ccccccCCCccEEEEecCCcccCcceeeccCCCCcCeeEEEeecCCCCCCCCCCCCcccceEeeCCCCCccccchhhhcc
Q 001161 552 PNVFAKMPNLRILKFYNSMDEENKCKVSHFQGSEFTEVRYLHWHGYPLKSLPSNIHPEKLVLLEMPYSNIEQLFDIVQNH 631 (1134)
Q Consensus 552 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l 631 (1134)
+..+.++++|+.|+++++.... .+....+++|++|++++|.++.+| ...+++|++|++++|.++.++ +..+
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~------~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l 105 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITD------MTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPL 105 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCC------CTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTC
T ss_pred ccChhHcCCCCEEEccCCCccc------ChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCC
Confidence 3467889999999998864321 222222389999999999999987 345899999999999999884 7889
Q ss_pred ccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCccCcCcccEEEecCCCCCCCcccccCCCcceeEec
Q 001161 632 GKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRIHLELLKELNLSGCSKLKRLPEISSGNIETMHLD 711 (1134)
Q Consensus 632 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~ 711 (1134)
++|++|++++|.. ..++ ++.+++|++|++++|.+.+ ++ ...+++|++|++++|..++.++....++|+.|+++
T Consensus 106 ~~L~~L~L~~N~l-~~l~----~~~l~~L~~L~l~~N~l~~-l~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 106 TKLTYLNCDTNKL-TKLD----VSQNPLLTYLNCARNTLTE-ID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCS 178 (457)
T ss_dssp TTCCEEECCSSCC-SCCC----CTTCTTCCEEECTTSCCSC-CC-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECC
T ss_pred CcCCEEECCCCcC-Ceec----CCCCCcCCEEECCCCccce-ec-cccCCcCCEEECCCCCcccccccccCCcCCEEECC
Confidence 9999999998853 3432 7889999999999988776 33 34789999999999987777754444888899999
Q ss_pred CcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCc
Q 001161 712 GTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPP 791 (1134)
Q Consensus 712 ~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~ 791 (1134)
+|.++.+| +..+++|+.|++++|.+.+. .+..+++|++|++++|.+.+ +| +..+++|+.|++++|.++.+|
T Consensus 179 ~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~- 249 (457)
T 3bz5_A 179 FNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD- 249 (457)
T ss_dssp SSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC-
T ss_pred CCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC-
Confidence 99888887 78888899999988886654 37788888888888888776 55 778888888888888888776
Q ss_pred cccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCC-CCccccccccCcceeecCCCCcc-ccccchhCCCC
Q 001161 792 SIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGIT-ELPESLGLLSLVTELHLEGNNFE-RIPESIIQLSN 869 (1134)
Q Consensus 792 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~ 869 (1134)
+..+++|+.|++++| +|+.|++++|.+. .+| ++.+++|+.|+|++|.+. .+|. ..++
T Consensus 250 -~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~ 308 (457)
T 3bz5_A 250 -VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAG 308 (457)
T ss_dssp -CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCC
T ss_pred -HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCc
Confidence 456788888888755 3677888888755 455 467889999999998654 6663 4567
Q ss_pred CcEEEeccccCCCccCCcCCCcCeEeccCCcccccccCCCCCCCCccceeeeccCCCCCCccccccchHHHHHHhHHHHH
Q 001161 870 LEWLFIRYCERLQSLPKLPCNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDNFKLDPNDLGGIVKGALQKIQLLAT 949 (1134)
Q Consensus 870 L~~L~Ls~n~~l~~lp~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~~~~~~~~~l~~L~~ 949 (1134)
|+.|++++| ++|+.|++++|.... + +...+++|+.|++++| .++++ +.|..
T Consensus 309 L~~L~l~~~----------~~L~~L~L~~N~l~~-l----~l~~l~~L~~L~l~~N------~l~~l--------~~L~~ 359 (457)
T 3bz5_A 309 ITELDLSQN----------PKLVYLYLNNTELTE-L----DVSHNTKLKSLSCVNA------HIQDF--------SSVGK 359 (457)
T ss_dssp CSCCCCTTC----------TTCCEEECTTCCCSC-C----CCTTCTTCSEEECCSS------CCCBC--------TTGGG
T ss_pred ceEechhhc----------ccCCEEECCCCcccc-c----ccccCCcCcEEECCCC------CCCCc--------ccccc
Confidence 777888877 478889999875433 3 3468899999999998 66553 45677
Q ss_pred HhHHhhhhcCCCCCCCceEEecCCCCCccccccCCCceEEEEcCCCCCCC
Q 001161 950 ARLKEAREKISYPSREGRGFLPWNEIPKWFSFQSAGSCVTLEMPPDFFND 999 (1134)
Q Consensus 950 L~L~~n~~~~~~~~~~~~~~~pg~~iP~~~~~~~~g~~~~~~lp~~~~~~ 999 (1134)
|++++|.++|. + .+. .+|. .....|.+++.+|+.+...
T Consensus 360 L~l~~n~l~g~-~------~~~--~l~~---l~l~~N~l~g~ip~~~~~~ 397 (457)
T 3bz5_A 360 IPALNNNFEAE-G------QTI--TMPK---ETLTNNSLTIAVSPDLLDQ 397 (457)
T ss_dssp SSGGGTSEEEE-E------EEE--ECCC---BCCBTTBEEEECCTTCBCT
T ss_pred ccccCCcEEec-c------eee--ecCc---cccccCcEEEEcChhHhcc
Confidence 88999998874 1 011 1222 2345688999999998753
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=4.3e-28 Score=296.95 Aligned_cols=347 Identities=16% Similarity=0.148 Sum_probs=271.3
Q ss_pred ccccCcccccccCccccccCCCccEEEEecCCcccCcceeeccCCCCc-CeeEEEeecCCCCCCCCCCCCcccceEeeCC
Q 001161 539 LLDMSKVKDINLHPNVFAKMPNLRILKFYNSMDEENKCKVSHFQGSEF-TEVRYLHWHGYPLKSLPSNIHPEKLVLLEMP 617 (1134)
Q Consensus 539 ~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~ 617 (1134)
.+|++++....+.+..|.++++|+.|++++|.. ....+..+.. ++|++|++++|.++.+|.. .+++|++|+|+
T Consensus 56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls 129 (562)
T 3a79_B 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRI-----RSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLS 129 (562)
T ss_dssp EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC-----CEECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECC
T ss_pred EEECCCCCccccChhhhccCCCccEEECCCCCC-----CcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECC
Confidence 578888888888899999999999999988752 2223444443 9999999999999999988 89999999999
Q ss_pred CCCccccc--hhhhccccchhhccccccCcCCCCCCCCCcCCCCC--cEEEccCCCC--CcccCCcc-------------
Q 001161 618 YSNIEQLF--DIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKL--AILNLSGCGN--LQSLPDRI------------- 678 (1134)
Q Consensus 618 ~n~i~~l~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L--~~L~L~~~~~--~~~lp~~~------------- 678 (1134)
+|.++.++ ..+.++++|++|++++|.... ..+..+++| +.|+|++|.+ .+..|..+
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 204 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-----LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-----TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEEC
T ss_pred CCCccccCchHhhcccCcccEEecCCCcccc-----CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEec
Confidence 99999865 789999999999999976432 245566666 9999999887 55444433
Q ss_pred --------------CcCcccEEEecCCCC--------------CCC------------------c-ccccCCCcceeEec
Q 001161 679 --------------HLELLKELNLSGCSK--------------LKR------------------L-PEISSGNIETMHLD 711 (1134)
Q Consensus 679 --------------~l~~L~~L~Ls~~~~--------------l~~------------------~-~~~~~~~L~~L~L~ 711 (1134)
.+++|+.|++++|.. +.. + +.....+|++|+++
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 284 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEE
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEe
Confidence 245677777777631 000 0 00111378888888
Q ss_pred CcCcc-ccCccc-----cCC--------------------------CCCCeeeccCCcCCcccCcccCCCCCCcEEeecC
Q 001161 712 GTALE-ELPSSI-----ECL--------------------------SKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDG 759 (1134)
Q Consensus 712 ~n~i~-~lp~~~-----~~l--------------------------~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~ 759 (1134)
+|.+. .+|..+ ..+ .+|+.|++++|.+.... ....+++|++|++++
T Consensus 285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQ 362 (562)
T ss_dssp EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCS
T ss_pred ccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCC
Confidence 88887 777655 222 34777888887754321 126889999999999
Q ss_pred CCCCCCCCccccCCCCCcEEEccCCcCcccC---ccccCCCCCCEEEecCCCCCCC-CcccccCCCCCCCEEeccCCCCC
Q 001161 760 CSNLQRLPEELGYLEALDSLHAVGTAIRELP---PSIVRLKSVRAIYFGRNRGLSL-PITFSVDGLQNLRDLNLNDCGIT 835 (1134)
Q Consensus 760 ~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp---~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~ 835 (1134)
|.+.+..|..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|. +.. .....+..+++|+.|+|++|.++
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~ 441 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLT 441 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSSCCC
T ss_pred CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCCCCC
Confidence 9999989999999999999999999999765 468899999999999998 554 44456788999999999999997
Q ss_pred C-CccccccccCcceeecCCCCccccccchhCCCCCcEEEeccccCCCccCC----cCCCcCeEeccCCccc
Q 001161 836 E-LPESLGLLSLVTELHLEGNNFERIPESIIQLSNLEWLFIRYCERLQSLPK----LPCNLIWLDAHHCTAL 902 (1134)
Q Consensus 836 ~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp~----~~~~L~~L~l~~c~~l 902 (1134)
. +|..+. ++|+.|+|++|+++.+|..+.++++|+.|+|++|++. .+|. .+++|+.|++++|+..
T Consensus 442 ~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 442 GSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp GGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred cchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcC
Confidence 4 444443 7999999999999999998889999999999999877 5664 3468999999998654
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=2e-28 Score=291.99 Aligned_cols=338 Identities=13% Similarity=0.088 Sum_probs=188.9
Q ss_pred CCccEEEEecCCcccCcceeeccCCCCc-CeeEEEeecCCCCC-CCCC-CC-CcccceEeeCCCCCcccc-chhhhcccc
Q 001161 559 PNLRILKFYNSMDEENKCKVSHFQGSEF-TEVRYLHWHGYPLK-SLPS-NI-HPEKLVLLEMPYSNIEQL-FDIVQNHGK 633 (1134)
Q Consensus 559 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~-~lp~-~~-~l~~L~~L~L~~n~i~~l-~~~~~~l~~ 633 (1134)
++|++|++++|.. ....+..+.. ++|++|++++|.+. .+|. .+ .+++|++|+|++|.++.+ +..+..+++
T Consensus 30 ~~l~~L~Ls~n~i-----~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 30 AHVNYVDLSLNSI-----AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp TTCCEEECCSSCC-----CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CccCEEEecCCcc-----CcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 4566666655431 1111222222 56666666666554 3332 23 356666666666666654 445566666
Q ss_pred chhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCc-c-CcCcccEEEecCCCCCCCcccccC----CCcce
Q 001161 634 LYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDR-I-HLELLKELNLSGCSKLKRLPEISS----GNIET 707 (1134)
Q Consensus 634 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-~-~l~~L~~L~Ls~~~~l~~~~~~~~----~~L~~ 707 (1134)
|++|++++|......+....+..+++|++|+|++|.+.+..|.. + ++++|++|++++|......+.... .+++.
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 66666666553322222333566666666666666666555553 2 566666666666655443333221 45666
Q ss_pred eEecCcCccccCcc---------ccCCCCCCeeeccCCcCCcccCcccCC---CCCCcEEeecCCCCCCCC---------
Q 001161 708 MHLDGTALEELPSS---------IECLSKLSRLDLADCKSLKSLPSGLCK---LKSLDVLNIDGCSNLQRL--------- 766 (1134)
Q Consensus 708 L~L~~n~i~~lp~~---------~~~l~~L~~L~L~~n~~~~~lp~~l~~---l~~L~~L~L~~~~~~~~~--------- 766 (1134)
|++++|.+..++.. +..+++|+.|++++|.+.+..|..+.. .++|+.|++++|...+..
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC
T ss_pred cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccC
Confidence 66666666655432 234566667777776666555544332 256666666665433221
Q ss_pred -Ccccc--CCCCCcEEEccCCcCccc-CccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCC-cccc
Q 001161 767 -PEELG--YLEALDSLHAVGTAIREL-PPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITEL-PESL 841 (1134)
Q Consensus 767 -p~~~~--~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l 841 (1134)
+..+. ..++|+.|++++|.+..+ |..+..+++|+.|++++|. +....+..+.++++|++|+|++|.++.+ |..+
T Consensus 265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCccCCcChhHh
Confidence 11111 124666666666666643 4455666666677766665 4444455566666677777777666654 4456
Q ss_pred ccccCcceeecCCCCcccc-ccchhCCCCCcEEEeccccCCCccCC---cCCCcCeEeccCCccc
Q 001161 842 GLLSLVTELHLEGNNFERI-PESIIQLSNLEWLFIRYCERLQSLPK---LPCNLIWLDAHHCTAL 902 (1134)
Q Consensus 842 ~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~~l~~lp~---~~~~L~~L~l~~c~~l 902 (1134)
+.+++|++|+|++|+++.+ |..+.++++|++|+|++|++.+..+. .+++|+.|++++|+..
T Consensus 344 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 6666677777777766654 45666666777777766665543332 2356666777666543
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=2.1e-27 Score=272.41 Aligned_cols=295 Identities=21% Similarity=0.224 Sum_probs=171.5
Q ss_pred eEEEeecCCCCCCCCCCCCcccceEeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCC
Q 001161 589 VRYLHWHGYPLKSLPSNIHPEKLVLLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGC 668 (1134)
Q Consensus 589 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~ 668 (1134)
|+.|+++++.+..+|....+++|++|++++|.++.++. +..+++|++|++++|. +..+ ..+..+++|++|++++|
T Consensus 46 L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~---~~~~~l~~L~~L~l~~n 120 (347)
T 4fmz_A 46 ITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDI---SALQNLTNLRELYLNED 120 (347)
T ss_dssp CSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCC---GGGTTCTTCSEEECTTS
T ss_pred ccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCc---hHHcCCCcCCEEECcCC
Confidence 33333334444444432234444555555554444433 4444455555554442 2221 23556666666666666
Q ss_pred CCCcccCCccCcCcccEEEecCCCCCCCcccccC-CCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccC
Q 001161 669 GNLQSLPDRIHLELLKELNLSGCSKLKRLPEISS-GNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLC 747 (1134)
Q Consensus 669 ~~~~~lp~~~~l~~L~~L~Ls~~~~l~~~~~~~~-~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~ 747 (1134)
.+.. ++....+++|++|++++|.....++.+.. ++|+.|++++|.+..++. +..+++|+.|++++|.+... +. +.
T Consensus 121 ~i~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~ 196 (347)
T 4fmz_A 121 NISD-ISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDI-SP-LA 196 (347)
T ss_dssp CCCC-CGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCC-GG-GG
T ss_pred cccC-chhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccc-cc-cc
Confidence 5443 33333566677777776665555554433 566666666666666555 66677777777777764432 22 56
Q ss_pred CCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEE
Q 001161 748 KLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDL 827 (1134)
Q Consensus 748 ~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 827 (1134)
.+++|+.|++++|.+.+..+ +..+++|++|++++|.++.++. +..+++|+.|++++|. +... ..+..+++|+.|
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L 270 (347)
T 4fmz_A 197 SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQ-ISDI--NAVKDLTKLKML 270 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCC--GGGTTCTTCCEE
T ss_pred CCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCc-cCCC--hhHhcCCCcCEE
Confidence 67777777777766554433 6667777777777777776655 6667777777777765 3332 245667777777
Q ss_pred eccCCCCCCCccccccccCcceeecCCCCcccc-ccchhCCCCCcEEEeccccCCCccC-CcCCCcCeEeccCC
Q 001161 828 NLNDCGITELPESLGLLSLVTELHLEGNNFERI-PESIIQLSNLEWLFIRYCERLQSLP-KLPCNLIWLDAHHC 899 (1134)
Q Consensus 828 ~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~~l~~lp-~~~~~L~~L~l~~c 899 (1134)
++++|.++.++ .+..+++|+.|+|++|.++.. |..+..+++|+.|+|++|++.+..| ..+++|+.|++++|
T Consensus 271 ~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 271 NVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQ 343 (347)
T ss_dssp ECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC
T ss_pred EccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhh
Confidence 77777777663 466677777777777777633 3556677777777777776554433 22344555555544
No 36
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.96 E-value=6.3e-30 Score=253.22 Aligned_cols=121 Identities=22% Similarity=0.364 Sum_probs=113.3
Q ss_pred CCCCCCccEEEcccccccccchHHHHHHHHhhCCCceEecC-CCCCCCcchHHHHHHHHhcccEEEEecCCcccchhhHH
Q 001161 16 TNPEVQYDVFLSFRGEDTRENFTSHLYSALSRESIETFIDD-DLRRGDEISQSLLDAIEASSISIIVFSERYASSRWCLD 94 (1134)
Q Consensus 16 ~~~~~~~dvFis~~~~D~r~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~~ 94 (1134)
..+.++|||||||+|+| |++|+.||+++|+++|+++|+|+ ++.+|+.|.++|.+||++|+++|+|+|++|+.|.||++
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 46789999999999999 67999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCcEEEeEEeeecccccccccccchhhHHhhc
Q 001161 95 ELLKILECKKEYAQIVIPACYRVDPSHVRKQTGNFGDSFLKLG 137 (1134)
Q Consensus 95 El~~~~~~~~~~~~~v~pvf~~v~p~~vr~q~g~~~~~~~~~~ 137 (1134)
|+..|++|...++++|+||||+|+|++||+|.|.|+++|+...
T Consensus 94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~ 136 (154)
T 3h16_A 94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNT 136 (154)
T ss_dssp HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEET
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhc
Confidence 9999999987788899999999999999999999999987654
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=2.4e-27 Score=280.84 Aligned_cols=301 Identities=18% Similarity=0.154 Sum_probs=192.9
Q ss_pred CeeEEEeecCCCCCCCCCCCCcccceEeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEcc
Q 001161 587 TEVRYLHWHGYPLKSLPSNIHPEKLVLLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLS 666 (1134)
Q Consensus 587 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~ 666 (1134)
++|++|++++|.++.+|....+++|++|++++|.++.++ +..+++|++|++++|. +..+ .++.+++|++|+|+
T Consensus 42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~----~~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNL----DVTPLTKLTYLNCD 114 (457)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCC----CCTTCTTCCEEECC
T ss_pred CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Ccee----ecCCCCcCCEEECC
Confidence 778888888888887774345777888888887777763 4555555555555544 2222 14555555555555
Q ss_pred CCCCCcccCCccCcCcccEEEecCCCCCCCcccccCCCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCccc
Q 001161 667 GCGNLQSLPDRIHLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGL 746 (1134)
Q Consensus 667 ~~~~~~~lp~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l 746 (1134)
+|.+.+ +| ...+++| +.|++++|.++.++ ++.+++|+.|++++|...+.++ +
T Consensus 115 ~N~l~~-l~-~~~l~~L----------------------~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~--~ 166 (457)
T 3bz5_A 115 TNKLTK-LD-VSQNPLL----------------------TYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD--V 166 (457)
T ss_dssp SSCCSC-CC-CTTCTTC----------------------CEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC--C
T ss_pred CCcCCe-ec-CCCCCcC----------------------CEEECCCCccceec--cccCCcCCEEECCCCCcccccc--c
Confidence 554433 22 2234444 44555555555553 5666677777777765555552 5
Q ss_pred CCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCE
Q 001161 747 CKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRD 826 (1134)
Q Consensus 747 ~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 826 (1134)
..+++|++|++++|.+.+ +| +..+++|+.|++++|.++.++ +..+++|+.|++++|+ +... + +..+++|+.
T Consensus 167 ~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~-l~~i-p--~~~l~~L~~ 237 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNK-LTEI-D--VTPLTQLTY 237 (457)
T ss_dssp TTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCC-C--CTTCTTCSE
T ss_pred ccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCc-cccc-C--ccccCCCCE
Confidence 566777777777766554 33 566667777777777766653 5666777777777766 3332 2 556667777
Q ss_pred EeccCCCCCCCccccccccCcce----------eecCCCCcc-ccccchhCCCCCcEEEeccccCCCccCCcCCCcCeEe
Q 001161 827 LNLNDCGITELPESLGLLSLVTE----------LHLEGNNFE-RIPESIIQLSNLEWLFIRYCERLQSLPKLPCNLIWLD 895 (1134)
Q Consensus 827 L~Ls~n~l~~lp~~l~~l~~L~~----------L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~~l~~lp~~~~~L~~L~ 895 (1134)
|++++|.++.+| ++.+++|+. |++++|.+. .+| +..+++|+.|++++|+.++.+|...++|+.|+
T Consensus 238 L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~ 313 (457)
T 3bz5_A 238 FDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD 313 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred EEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence 777777766654 334444444 455555433 344 45678888888888888888776666777776
Q ss_pred ccCCcccccccCCCCCCCCccceeeeccCCCCCCccccccchHHHHHHhHHHHHHhHHhhhhcC
Q 001161 896 AHHCTALESLPGLFPSSNESYLRTLYLSDNFKLDPNDLGGIVKGALQKIQLLATARLKEAREKI 959 (1134)
Q Consensus 896 l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 959 (1134)
+++| ++|+.|++++| .++++ + +.++++|+.|++++|++++
T Consensus 314 l~~~---------------~~L~~L~L~~N------~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 314 LSQN---------------PKLVYLYLNNT------ELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CTTC---------------TTCCEEECTTC------CCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred hhhc---------------ccCCEEECCCC------ccccc-c--cccCCcCcEEECCCCCCCC
Confidence 6655 46788898888 67775 2 7789999999999999986
No 38
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=3.4e-27 Score=279.30 Aligned_cols=320 Identities=22% Similarity=0.267 Sum_probs=119.3
Q ss_pred CeeEEEeecCCCCCCCCCCCCcccceEeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEcc
Q 001161 587 TEVRYLHWHGYPLKSLPSNIHPEKLVLLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLS 666 (1134)
Q Consensus 587 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~ 666 (1134)
.+|++|++++|.++.+|.. +++|++|++++|.++.+| .+..+++|++|++++|. +..+|. ...+|++|+++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~-----~~~~L~~L~L~ 181 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS-LKKLPD-----LPPSLEFIAAG 181 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECC
T ss_pred CCCcEEECCCCccCcccCC--CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCc-CcccCC-----CcccccEEECc
Confidence 4445555555544444432 134555555555555444 34445555555554443 222221 11345555555
Q ss_pred CCCCCcccCCccCcCcccEEEecCCCCCCCcccccCCCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCccc
Q 001161 667 GCGNLQSLPDRIHLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGL 746 (1134)
Q Consensus 667 ~~~~~~~lp~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l 746 (1134)
+|.+.+ +|...++++|++|++++|... .+|... .+|+.|++++|.+..+|. ++.+++|++|++++|.+.+ +|.
T Consensus 182 ~n~l~~-l~~~~~l~~L~~L~l~~N~l~-~l~~~~-~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~-- 254 (454)
T 1jl5_A 182 NNQLEE-LPELQNLPFLTAIYADNNSLK-KLPDLP-LSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPD-- 254 (454)
T ss_dssp SSCCSS-CCCCTTCTTCCEEECCSSCCS-SCCCCC-TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCS--
T ss_pred CCcCCc-CccccCCCCCCEEECCCCcCC-cCCCCc-CcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-ccc--
Confidence 544333 343224555555555554322 222221 345555555555554442 4445555555555544332 332
Q ss_pred CCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCC-CCCC
Q 001161 747 CKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGL-QNLR 825 (1134)
Q Consensus 747 ~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~ 825 (1134)
.+++|++|++++|.+.+ +|.. +++|+.|++++|.++.+|.. .++|+.|++++|. +.. +..+ ++|+
T Consensus 255 -~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~-l~~-----i~~~~~~L~ 320 (454)
T 1jl5_A 255 -LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNE-IRS-----LCDLPPSLE 320 (454)
T ss_dssp -CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCC---CTTCCEEECCSSC-CSE-----ECCCCTTCC
T ss_pred -cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCc---CCcCCEEECcCCc-CCc-----ccCCcCcCC
Confidence 12445555555544333 3322 24455555555554443321 1345555555444 221 1112 3455
Q ss_pred EEeccCCCCCCCccccccccCcceeecCCCCccccccchhCCCCCcEEEeccccCCCccCCcCCCcCeEeccCCcccccc
Q 001161 826 DLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPESIIQLSNLEWLFIRYCERLQSLPKLPCNLIWLDAHHCTALESL 905 (1134)
Q Consensus 826 ~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp~~~~~L~~L~l~~c~~l~~~ 905 (1134)
.|++++|+++.+|.. +++|++|+|++|+++.+|. .+++|+.|++++|++.+ +|..|.++..|.. |.....+
T Consensus 321 ~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~-l~~ip~~l~~L~~--n~~~~~i 391 (454)
T 1jl5_A 321 ELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLRE-FPDIPESVEDLRM--NSHLAEV 391 (454)
T ss_dssp EEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSS-CCCCCTTCCEEEC--CC-----
T ss_pred EEECCCCcccccccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCc-CCCChHHHHhhhh--ccccccc
Confidence 555555555554432 3455555555555555554 24555555555554433 2222233333321 2222222
Q ss_pred cCCCCCCCCccceeeeccCCCCCCcccccc--chHHHHHHhHHHHHHhHHhhhhcCCCC
Q 001161 906 PGLFPSSNESYLRTLYLSDNFKLDPNDLGG--IVKGALQKIQLLATARLKEAREKISYP 962 (1134)
Q Consensus 906 ~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~ 962 (1134)
+. .+++|+.|++++| .+++ .+|. .|+.|.+.+|.+.+.++
T Consensus 392 ~~-----~~~~L~~L~ls~N------~l~~~~~iP~------sl~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 392 PE-----LPQNLKQLHVETN------PLREFPDIPE------SVEDLRMNSERVVDPYE 433 (454)
T ss_dssp -----------------------------------------------------------
T ss_pred cc-----ccCcCCEEECCCC------cCCccccchh------hHhheeCcCcccCCccc
Confidence 21 2378999999998 6665 3443 35566777887766443
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=2.1e-27 Score=272.34 Aligned_cols=307 Identities=20% Similarity=0.237 Sum_probs=256.6
Q ss_pred cccccCCCccEEEEecCCcccCcceeeccCCCCc-CeeEEEeecCCCCCCCCCCCCcccceEeeCCCCCccccchhhhcc
Q 001161 553 NVFAKMPNLRILKFYNSMDEENKCKVSHFQGSEF-TEVRYLHWHGYPLKSLPSNIHPEKLVLLEMPYSNIEQLFDIVQNH 631 (1134)
Q Consensus 553 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l 631 (1134)
..+..+++|+.|++.++.. .....+.. ++|++|++++|.++.+|....+++|++|++++|.++.++ .+..+
T Consensus 38 ~~~~~l~~L~~L~l~~~~i-------~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l 109 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEKV-------ASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNL 109 (347)
T ss_dssp ECHHHHTTCSEEECCSSCC-------CCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTC
T ss_pred ccchhcccccEEEEeCCcc-------ccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCC
Confidence 3456889999999987542 22233333 899999999999999988556999999999999999985 68899
Q ss_pred ccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCccCcCcccEEEecCCCCCCCcccccCCCcceeEec
Q 001161 632 GKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRIHLELLKELNLSGCSKLKRLPEISSGNIETMHLD 711 (1134)
Q Consensus 632 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~ 711 (1134)
++|++|++++|.. ...+ .+..+++|++|++++|.....++....+++|++|++++|......+....++|+.|+++
T Consensus 110 ~~L~~L~l~~n~i-~~~~---~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 110 TNLRELYLNEDNI-SDIS---PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLN 185 (347)
T ss_dssp TTCSEEECTTSCC-CCCG---GGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECT
T ss_pred CcCCEEECcCCcc-cCch---hhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEcc
Confidence 9999999998763 3332 28899999999999998888887766899999999999875544442233899999999
Q ss_pred CcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCc
Q 001161 712 GTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPP 791 (1134)
Q Consensus 712 ~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~ 791 (1134)
+|.+..++. +..+++|+.|++++|.+....+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.++.+ .
T Consensus 186 ~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~ 259 (347)
T 4fmz_A 186 YNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-N 259 (347)
T ss_dssp TSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G
T ss_pred CCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-h
Confidence 999999887 8899999999999998765544 7899999999999998766544 88999999999999999987 4
Q ss_pred cccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCC-ccccccccCcceeecCCCCccccccchhCCCCC
Q 001161 792 SIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITEL-PESLGLLSLVTELHLEGNNFERIPESIIQLSNL 870 (1134)
Q Consensus 792 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 870 (1134)
.+..+++|+.|++++|. +... ..+..+++|+.|++++|.++.. |..++.+++|++|+|++|+++.++. +..+++|
T Consensus 260 ~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L 335 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQ-ISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKM 335 (347)
T ss_dssp GGTTCTTCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTC
T ss_pred hHhcCCCcCEEEccCCc-cCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhcc
Confidence 68889999999999997 5443 3578899999999999999964 5678999999999999999998876 8999999
Q ss_pred cEEEeccccCC
Q 001161 871 EWLFIRYCERL 881 (1134)
Q Consensus 871 ~~L~Ls~n~~l 881 (1134)
+.|++++|++.
T Consensus 336 ~~L~l~~N~i~ 346 (347)
T 4fmz_A 336 DSADFANQVIK 346 (347)
T ss_dssp SEESSSCC---
T ss_pred ceeehhhhccc
Confidence 99999999864
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=6.1e-28 Score=289.58 Aligned_cols=306 Identities=20% Similarity=0.188 Sum_probs=228.2
Q ss_pred EEEeecCCCCCCCCCCCCcccceEeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCC
Q 001161 590 RYLHWHGYPLKSLPSNIHPEKLVLLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCG 669 (1134)
Q Consensus 590 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~ 669 (1134)
+.++.+++.++.+|..+ +++|+.|+|++|+++.++ +..|.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~-------------------------~~~~~~l~~L~~L~L~~n~ 67 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLN-------------------------QDEFASFPHLEELELNENI 67 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEEC-------------------------TTTTTTCTTCCEEECTTSC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceEC-------------------------HhHccCCCCCCEEECCCCc
Confidence 46778888899999866 578999999999988873 2234445555555555554
Q ss_pred CCcccCCcc-CcCcccEEEecCCCCCCCccc-ccC--CCcceeEecCcCcccc-CccccCCCCCCeeeccCCcCCcccCc
Q 001161 670 NLQSLPDRI-HLELLKELNLSGCSKLKRLPE-ISS--GNIETMHLDGTALEEL-PSSIECLSKLSRLDLADCKSLKSLPS 744 (1134)
Q Consensus 670 ~~~~lp~~~-~l~~L~~L~Ls~~~~l~~~~~-~~~--~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~~lp~ 744 (1134)
+.+..|..+ ++++|++|+|++|... .+|. .+. .+|+.|+|++|.+..+ |..+..+++|+.|+|++|.+....+.
T Consensus 68 i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 146 (477)
T 2id5_A 68 VSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR 146 (477)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT
T ss_pred cCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChh
Confidence 444444444 3555555555554322 2222 111 4566666666666655 44689999999999999998888888
Q ss_pred ccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCc-cccCCCCCCEEEecCCCCCCCCcccccCCCCC
Q 001161 745 GLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPP-SIVRLKSVRAIYFGRNRGLSLPITFSVDGLQN 823 (1134)
Q Consensus 745 ~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 823 (1134)
.|.++++|++|++++|.+.+..+..+..+++|+.|++++|.+..++. .+..+++|+.|++++|... ...+.......+
T Consensus 147 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~ 225 (477)
T 2id5_A 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL-DTMTPNCLYGLN 225 (477)
T ss_dssp SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC-CEECTTTTTTCC
T ss_pred hccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc-cccCcccccCcc
Confidence 89999999999999998887777789999999999999999997665 6788999999999998733 333333444569
Q ss_pred CCEEeccCCCCCCCcc-ccccccCcceeecCCCCccccc-cchhCCCCCcEEEeccccCCCccCCc---CCCcCeEeccC
Q 001161 824 LRDLNLNDCGITELPE-SLGLLSLVTELHLEGNNFERIP-ESIIQLSNLEWLFIRYCERLQSLPKL---PCNLIWLDAHH 898 (1134)
Q Consensus 824 L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~~l~~lp~~---~~~L~~L~l~~ 898 (1134)
|+.|+|++|+++.+|. .+..+++|+.|+|++|.++.++ ..+.++++|+.|+|++|++.+..|.. .++|+.|++++
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCS
T ss_pred ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCC
Confidence 9999999999999884 6889999999999999999776 45889999999999999887766643 46889999998
Q ss_pred CcccccccCCCCCCCCccceeeeccCC
Q 001161 899 CTALESLPGLFPSSNESYLRTLYLSDN 925 (1134)
Q Consensus 899 c~~l~~~~~~~~~~~l~~L~~L~Ls~n 925 (1134)
|... .++.. ....+++|+.|+|++|
T Consensus 306 N~l~-~~~~~-~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 306 NQLT-TLEES-VFHSVGNLETLILDSN 330 (477)
T ss_dssp SCCS-CCCGG-GBSCGGGCCEEECCSS
T ss_pred CcCc-eeCHh-HcCCCcccCEEEccCC
Confidence 7543 33321 1136788899998888
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=8.1e-28 Score=299.68 Aligned_cols=409 Identities=19% Similarity=0.145 Sum_probs=253.4
Q ss_pred cccccCcccccccCccccccCCCccEEEEecCCcccCcceeeccCCCC-cCeeEEEeecCCCCCCCCCC-C-CcccceEe
Q 001161 538 ILLDMSKVKDINLHPNVFAKMPNLRILKFYNSMDEENKCKVSHFQGSE-FTEVRYLHWHGYPLKSLPSN-I-HPEKLVLL 614 (1134)
Q Consensus 538 i~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L 614 (1134)
-.+|++.+.+..+.+.+|.++++|++|++++|.. ....+..+. +++|++|++++|.++.+|.. | ++++|++|
T Consensus 55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i-----~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-----QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC-----CEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC-----CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 3589999999999999999999999999988642 122223343 38999999999999999875 3 58999999
Q ss_pred eCCCCCccccchh-hhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCcc-CcC-----------
Q 001161 615 EMPYSNIEQLFDI-VQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRI-HLE----------- 681 (1134)
Q Consensus 615 ~L~~n~i~~l~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~-~l~----------- 681 (1134)
+|++|+++.++.. +.++++|++|++++|. +..++.+..+..+++|++|+|++|.+.+..|..+ .+.
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 9999999998764 7889999999999986 3444556788999999999999998766554433 111
Q ss_pred ----------------cccEEEecCCCCCC---------------------------Cccc-------------------
Q 001161 682 ----------------LLKELNLSGCSKLK---------------------------RLPE------------------- 699 (1134)
Q Consensus 682 ----------------~L~~L~Ls~~~~l~---------------------------~~~~------------------- 699 (1134)
.++.|++.+|.... .+..
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 12233333321000 0000
Q ss_pred ------------cc--CCCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCc-------------------cc
Q 001161 700 ------------IS--SGNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPS-------------------GL 746 (1134)
Q Consensus 700 ------------~~--~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~-------------------~l 746 (1134)
.. ..+++.+.+.++.+..++. +....+|+.|++.+|.+....+. ..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 367 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 367 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG-GGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred hhhcccccchhhhhhhhcccccccccccccccccc-cccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence 00 0233444444444443332 44556677777777654332221 12
Q ss_pred CCCCCCcEEeecCCCCCC--CCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCC
Q 001161 747 CKLKSLDVLNIDGCSNLQ--RLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNL 824 (1134)
Q Consensus 747 ~~l~~L~~L~L~~~~~~~--~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 824 (1134)
..+++|+.|++++|.+.. ..+..+..+.+|+.|++..+.+..++..+..+++|+.+++..|..........+..+++|
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence 245556666665555432 234444455566666666666555555566666666666665553333333455666667
Q ss_pred CEEeccCCCCCCC-ccccccccCcceeecCCCCcc--ccccchhCCCCCcEEEeccccCCCccCCc---CCCcCeEeccC
Q 001161 825 RDLNLNDCGITEL-PESLGLLSLVTELHLEGNNFE--RIPESIIQLSNLEWLFIRYCERLQSLPKL---PCNLIWLDAHH 898 (1134)
Q Consensus 825 ~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~~l~~lp~~---~~~L~~L~l~~ 898 (1134)
+.++++.|.+..+ +..+..+++|+.|+|++|++. .+|..+..+++|+.|+|++|++.+..|.. +++|+.|++++
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence 7777777666643 344566667777777766543 24556666677777777777665555532 34666777766
Q ss_pred CcccccccCCCCCCCCccceeeeccCCCCCCccccccchHHHHHHh-HHHHHHhHHhhhhcCCC
Q 001161 899 CTALESLPGLFPSSNESYLRTLYLSDNFKLDPNDLGGIVKGALQKI-QLLATARLKEAREKISY 961 (1134)
Q Consensus 899 c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~~~~~~~~~l-~~L~~L~L~~n~~~~~~ 961 (1134)
|......+.. ...+++|+.|+|++| .++++.|..+..+ ++|++|+|++|++.+.+
T Consensus 528 N~l~~l~~~~--~~~l~~L~~L~Ls~N------~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 528 NNFFSLDTFP--YKCLNSLQVLDYSLN------HIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp SCCCBCCCGG--GTTCTTCCEEECTTS------CCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CcCCCCChhH--HhCCCCCCEEECCCC------cCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 5432222211 135666677776666 6666666666655 46666777777666543
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=9.2e-27 Score=271.50 Aligned_cols=294 Identities=17% Similarity=0.161 Sum_probs=180.2
Q ss_pred CeeEEEeecCCCCCCCCCCC--CcccceEeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEE
Q 001161 587 TEVRYLHWHGYPLKSLPSNI--HPEKLVLLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILN 664 (1134)
Q Consensus 587 ~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 664 (1134)
.+|++|+++++.++.+|..+ .+++|++|++++|.++.++ +..+..+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~-------------------------~~~~~~l~~L~~L~ 99 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID-------------------------TYAFAYAHTIQKLY 99 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEEC-------------------------TTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccC-------------------------hhhccCCCCcCEEE
Confidence 44555555555555555432 2455555555555555442 22344555555555
Q ss_pred ccCCCCCcccCCcc-CcCcccEEEecCCCCCCCccc-ccC--CCcceeEecCcCccccCc-cccCCCCCCeeeccCCcCC
Q 001161 665 LSGCGNLQSLPDRI-HLELLKELNLSGCSKLKRLPE-ISS--GNIETMHLDGTALEELPS-SIECLSKLSRLDLADCKSL 739 (1134)
Q Consensus 665 L~~~~~~~~lp~~~-~l~~L~~L~Ls~~~~l~~~~~-~~~--~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~ 739 (1134)
|++|.+.+..|..+ ++++|++|+|++|... .+|. .+. ++|++|++++|.+..++. .+..+++|++|++++|.+.
T Consensus 100 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 100 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 55555444444433 4555555555554332 2332 111 455666666666665543 3677777777777777654
Q ss_pred cccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccC
Q 001161 740 KSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVD 819 (1134)
Q Consensus 740 ~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 819 (1134)
.. + +..+++|+.|++++|.+.+ +...++|+.|++++|.+..+|... .++|+.|++++|. +... ..+.
T Consensus 179 ~~-~--~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~-l~~~--~~l~ 245 (390)
T 3o6n_A 179 HV-D--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNN-LTDT--AWLL 245 (390)
T ss_dssp BC-C--GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSC-CCCC--GGGG
T ss_pred cc-c--cccccccceeecccccccc-----cCCCCcceEEECCCCeeeeccccc--cccccEEECCCCC-Cccc--HHHc
Confidence 43 2 4566777777777765442 233457777777777777665432 4677777777776 4433 3566
Q ss_pred CCCCCCEEeccCCCCCCC-ccccccccCcceeecCCCCccccccchhCCCCCcEEEeccccCCCccCC---cCCCcCeEe
Q 001161 820 GLQNLRDLNLNDCGITEL-PESLGLLSLVTELHLEGNNFERIPESIIQLSNLEWLFIRYCERLQSLPK---LPCNLIWLD 895 (1134)
Q Consensus 820 ~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp~---~~~~L~~L~ 895 (1134)
.+++|++|+|++|.++.+ |..+..+++|++|+|++|+++.+|..+..+++|+.|+|++|++. .+|. .+++|+.|+
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEE
Confidence 777777788877777764 56677777788888888777777776777777888888777655 3342 236777888
Q ss_pred ccCCcccccccCCCCCCCCccceeeeccCC
Q 001161 896 AHHCTALESLPGLFPSSNESYLRTLYLSDN 925 (1134)
Q Consensus 896 l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n 925 (1134)
+++|.. ..+ +...+++|+.|++++|
T Consensus 325 L~~N~i-~~~----~~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 325 LDHNSI-VTL----KLSTHHTLKNLTLSHN 349 (390)
T ss_dssp CCSSCC-CCC----CCCTTCCCSEEECCSS
T ss_pred CCCCcc-cee----CchhhccCCEEEcCCC
Confidence 877654 232 2356788999999988
No 43
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=278.28 Aligned_cols=292 Identities=20% Similarity=0.183 Sum_probs=232.7
Q ss_pred CeeEEEeecCCCCCCCCC-CC-CcccceEeeCCCCCcccc-chhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEE
Q 001161 587 TEVRYLHWHGYPLKSLPS-NI-HPEKLVLLEMPYSNIEQL-FDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAIL 663 (1134)
Q Consensus 587 ~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 663 (1134)
.+|++|++++|.++.++. .+ .+++|++|+|++|.++.+ +..+.++++|+.|++++|. +..++ +..|.++++|++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIP-LGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCC-TTSSTTCTTCCEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccC-cccccCCCCCCEE
Confidence 567777888888877754 34 478888888888888876 5667788888888888765 33443 3457888999999
Q ss_pred EccCCCCCcccCCcc-CcCcccEEEecCCCCCCCcccccC--CCcceeEecCcCccccCcc-ccCCCCCCeeeccCCcCC
Q 001161 664 NLSGCGNLQSLPDRI-HLELLKELNLSGCSKLKRLPEISS--GNIETMHLDGTALEELPSS-IECLSKLSRLDLADCKSL 739 (1134)
Q Consensus 664 ~L~~~~~~~~lp~~~-~l~~L~~L~Ls~~~~l~~~~~~~~--~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~ 739 (1134)
+|++|.+.+..|..+ ++++|++|+|++|......+..+. .+|+.|+|++|.++.+|.. +..+++|+.|+|++|.+.
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 999988887777666 688999999988765444343333 7888888888888888764 888999999999999888
Q ss_pred cccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCc-cccCCCCCCEEEecCCCCCCCCccccc
Q 001161 740 KSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPP-SIVRLKSVRAIYFGRNRGLSLPITFSV 818 (1134)
Q Consensus 740 ~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~~~~~~ 818 (1134)
+..+..+..+++|+.|++++|...+.+|.......+|+.|++++|.++.+|. .+..+++|+.|+|++|. +....+..+
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 268 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSML 268 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSC
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccChhhc
Confidence 7777788899999999999998888888777777799999999999998884 57788999999999887 665556677
Q ss_pred CCCCCCCEEeccCCCCCCC-ccccccccCcceeecCCCCcccccc-chhCCCCCcEEEeccccCC
Q 001161 819 DGLQNLRDLNLNDCGITEL-PESLGLLSLVTELHLEGNNFERIPE-SIIQLSNLEWLFIRYCERL 881 (1134)
Q Consensus 819 ~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~~l 881 (1134)
.++++|+.|+|++|+++.+ |..+..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|++.
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 8888999999999988875 6678888999999999999888775 4577888888888888764
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.5e-26 Score=284.69 Aligned_cols=295 Identities=16% Similarity=0.144 Sum_probs=168.2
Q ss_pred CeeEEEeecCCCCCCCCCCC--CcccceEeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEE
Q 001161 587 TEVRYLHWHGYPLKSLPSNI--HPEKLVLLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILN 664 (1134)
Q Consensus 587 ~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 664 (1134)
.+++.|++++|.+..+|..+ .+++|+.|+|++|.++.++. ..|..+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~-------------------------~~~~~l~~L~~L~ 105 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT-------------------------YAFAYAHTIQKLY 105 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECT-------------------------TTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCCh-------------------------HHhcCCCCCCEEE
Confidence 45555555555555555543 24555555555555555432 2344444455555
Q ss_pred ccCCCCCcccCCcc-CcCcccEEEecCCCCCCCcccccC--CCcceeEecCcCccccCc-cccCCCCCCeeeccCCcCCc
Q 001161 665 LSGCGNLQSLPDRI-HLELLKELNLSGCSKLKRLPEISS--GNIETMHLDGTALEELPS-SIECLSKLSRLDLADCKSLK 740 (1134)
Q Consensus 665 L~~~~~~~~lp~~~-~l~~L~~L~Ls~~~~l~~~~~~~~--~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~ 740 (1134)
|++|.+.+..|..+ ++++|++|+|++|......+..+. ++|++|+|++|.+..+++ .+..+++|+.|+|++|.+.+
T Consensus 106 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 106 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 55444444333333 344555555555432222222111 455555555555554443 46666777777777666544
Q ss_pred ccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCC
Q 001161 741 SLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDG 820 (1134)
Q Consensus 741 ~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 820 (1134)
. + +..+++|+.|++++|.+.+ +...++|+.|++++|.+..++..+ .++|+.|++++|. +... ..+..
T Consensus 186 ~-~--~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~-l~~~--~~l~~ 252 (597)
T 3oja_B 186 V-D--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNN-LTDT--AWLLN 252 (597)
T ss_dssp C-C--GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSC-CCCC--GGGGG
T ss_pred c-C--hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCC-CCCC--hhhcc
Confidence 2 2 3456667777776665432 233456777777777766555433 2567777777665 3332 34566
Q ss_pred CCCCCEEeccCCCCCCC-ccccccccCcceeecCCCCccccccchhCCCCCcEEEeccccCCCccCC---cCCCcCeEec
Q 001161 821 LQNLRDLNLNDCGITEL-PESLGLLSLVTELHLEGNNFERIPESIIQLSNLEWLFIRYCERLQSLPK---LPCNLIWLDA 896 (1134)
Q Consensus 821 l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp~---~~~~L~~L~l 896 (1134)
+++|+.|+|++|.++.+ |..++.+++|+.|+|++|.++.+|..+..+++|+.|+|++|++. .+|. .+++|+.|++
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L 331 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 331 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEEC
Confidence 67777777777777654 55666777777777777777777666666777777777777655 3442 2356777777
Q ss_pred cCCcccccccCCCCCCCCccceeeeccCC
Q 001161 897 HHCTALESLPGLFPSSNESYLRTLYLSDN 925 (1134)
Q Consensus 897 ~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n 925 (1134)
++|... .+ +...+++|+.|+|++|
T Consensus 332 ~~N~l~-~~----~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 332 DHNSIV-TL----KLSTHHTLKNLTLSHN 355 (597)
T ss_dssp CSSCCC-CC----CCCTTCCCSEEECCSS
T ss_pred CCCCCC-Cc----ChhhcCCCCEEEeeCC
Confidence 776542 22 2346778888888888
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=1.1e-25 Score=256.06 Aligned_cols=241 Identities=20% Similarity=0.306 Sum_probs=138.6
Q ss_pred CeeEEEeecCCCCCCCCCCCCcccceEeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEcc
Q 001161 587 TEVRYLHWHGYPLKSLPSNIHPEKLVLLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLS 666 (1134)
Q Consensus 587 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~ 666 (1134)
.+|++++++++.++.+|..+ +++|+.|+|++|+++.++ +..+..+++|++|+|+
T Consensus 31 c~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~-------------------------~~~~~~l~~L~~L~L~ 84 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIK-------------------------DGDFKNLKNLHTLILI 84 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBC-------------------------TTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeC-------------------------hhhhccCCCCCEEECC
Confidence 47888888888888888766 468888888888887763 2346677788888888
Q ss_pred CCCCCcccCCcc-CcCcccEEEecCCCCCCCcccccCCCcceeEecCcCccccCcc-ccCCCCCCeeeccCCcCCc--cc
Q 001161 667 GCGNLQSLPDRI-HLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSS-IECLSKLSRLDLADCKSLK--SL 742 (1134)
Q Consensus 667 ~~~~~~~lp~~~-~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~--~l 742 (1134)
+|.+.+..|..+ ++++|++|+|++|. ++.+|.....+|++|++++|.+..++.. +.++++|+.|++++|.+.. ..
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 163 (330)
T 1xku_A 85 NNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163 (330)
T ss_dssp SSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC
T ss_pred CCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcC
Confidence 877776666665 57777777777754 2334433334555555555555554432 5555555555555555432 33
Q ss_pred CcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCC
Q 001161 743 PSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQ 822 (1134)
Q Consensus 743 p~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 822 (1134)
+..+.++++|++|++++| .++.+|..+. ++|+.|++++|. +....+..+..++
T Consensus 164 ~~~~~~l~~L~~L~l~~n------------------------~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~ 216 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADT------------------------NITTIPQGLP--PSLTELHLDGNK-ITKVDAASLKGLN 216 (330)
T ss_dssp TTGGGGCTTCCEEECCSS------------------------CCCSCCSSCC--TTCSEEECTTSC-CCEECTGGGTTCT
T ss_pred hhhccCCCCcCEEECCCC------------------------ccccCCcccc--ccCCEEECCCCc-CCccCHHHhcCCC
Confidence 444445555555555554 4444443332 444444444444 3333333444455
Q ss_pred CCCEEeccCCCCCCCcc-ccccccCcceeecCCCCccccccchhCCCCCcEEEeccccCC
Q 001161 823 NLRDLNLNDCGITELPE-SLGLLSLVTELHLEGNNFERIPESIIQLSNLEWLFIRYCERL 881 (1134)
Q Consensus 823 ~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l 881 (1134)
+|+.|+|++|.++.++. .+..+++|++|+|++|+++.+|.++..+++|++|+|++|++.
T Consensus 217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC
T ss_pred CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCC
Confidence 55555555555554332 445555555555555555555555555555555555555443
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=1.4e-25 Score=255.26 Aligned_cols=284 Identities=16% Similarity=0.218 Sum_probs=159.9
Q ss_pred CeeEEEeecCCCCCCCCCCCCcccceEeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEcc
Q 001161 587 TEVRYLHWHGYPLKSLPSNIHPEKLVLLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLS 666 (1134)
Q Consensus 587 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~ 666 (1134)
.+|+.++++++.++.+|..+ +++|+.|++++|.++.++ +..+..+++|++|+|+
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~-------------------------~~~~~~l~~L~~L~L~ 86 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELR-------------------------KDDFKGLQHLYALVLV 86 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEEC-------------------------TTTTTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccC-------------------------HhHhhCCCCCcEEECC
Confidence 46778888888888888766 467888888888777652 3346677888888888
Q ss_pred CCCCCcccCCcc-CcCcccEEEecCCCCCCCcccccCCCcceeEecCcCccccCcc-ccCCCCCCeeeccCCcCCcccCc
Q 001161 667 GCGNLQSLPDRI-HLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSS-IECLSKLSRLDLADCKSLKSLPS 744 (1134)
Q Consensus 667 ~~~~~~~lp~~~-~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~ 744 (1134)
+|.+.+..|..+ ++++|++|+|++|.. ..+|.....+|++|++++|.+..+|.. +..+++|+.|++++|.+..
T Consensus 87 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~---- 161 (332)
T 2ft3_A 87 NNKISKIHEKAFSPLRKLQKLYISKNHL-VEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN---- 161 (332)
T ss_dssp SSCCCEECGGGSTTCTTCCEEECCSSCC-CSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG----
T ss_pred CCccCccCHhHhhCcCCCCEEECCCCcC-CccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc----
Confidence 877776666655 577777777777543 233332224444555555555444432 4445555555555544421
Q ss_pred ccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCC
Q 001161 745 GLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNL 824 (1134)
Q Consensus 745 ~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 824 (1134)
.+..|..+..+ +|+.|++++|.++.+|..+. ++|+.|++++|. +....+..+..+++|
T Consensus 162 ------------------~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~l~~l~~L 219 (332)
T 2ft3_A 162 ------------------SGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNK-IQAIELEDLLRYSKL 219 (332)
T ss_dssp ------------------GGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSC-CCCCCTTSSTTCTTC
T ss_pred ------------------CCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCc-CCccCHHHhcCCCCC
Confidence 11333444444 55555555555555554433 455555555554 444444455566666
Q ss_pred CEEeccCCCCCCCcc-ccccccCcceeecCCCCccccccchhCCCCCcEEEeccccCCCccCCc---------CCCcCeE
Q 001161 825 RDLNLNDCGITELPE-SLGLLSLVTELHLEGNNFERIPESIIQLSNLEWLFIRYCERLQSLPKL---------PCNLIWL 894 (1134)
Q Consensus 825 ~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp~~---------~~~L~~L 894 (1134)
+.|+|++|.++.++. .+..+++|++|+|++|+++.+|..+..+++|+.|++++|++...-+.. .++|+.|
T Consensus 220 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L 299 (332)
T 2ft3_A 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI 299 (332)
T ss_dssp SCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEE
T ss_pred CEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccce
Confidence 666666666665543 556666666666666666666666666666666666666554322211 2344555
Q ss_pred eccCCccc--ccccCCCCCCCCccceeeeccCC
Q 001161 895 DAHHCTAL--ESLPGLFPSSNESYLRTLYLSDN 925 (1134)
Q Consensus 895 ~l~~c~~l--~~~~~~~~~~~l~~L~~L~Ls~n 925 (1134)
++++|+.. ...+..+ ..+++|+.+++++|
T Consensus 300 ~l~~N~~~~~~~~~~~~--~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 300 SLFNNPVPYWEVQPATF--RCVTDRLAIQFGNY 330 (332)
T ss_dssp ECCSSSSCGGGSCGGGG--TTBCCSTTEEC---
T ss_pred EeecCcccccccCcccc--cccchhhhhhcccc
Confidence 55554432 1111111 24555566666555
No 47
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=3.1e-25 Score=258.56 Aligned_cols=305 Identities=16% Similarity=0.135 Sum_probs=247.3
Q ss_pred CCCcccceEeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCcc-CcCcc
Q 001161 605 NIHPEKLVLLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRI-HLELL 683 (1134)
Q Consensus 605 ~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~-~l~~L 683 (1134)
.+.+++|+.|++++|.++.+|.. .+..+++|++|+|++|.+.+..+..+ .+++|
T Consensus 41 ~~~l~~l~~l~l~~~~l~~l~~~-------------------------~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 95 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMRKLPAA-------------------------LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTI 95 (390)
T ss_dssp SGGGCCCSEEEEESCEESEECTH-------------------------HHHHCCCCSEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccccCCceEEEecCCchhhCChh-------------------------HhcccccCcEEECCCCcccccChhhccCCCCc
Confidence 34567788888888877776432 25678889999999988777666555 69999
Q ss_pred cEEEecCCCCCCCcccccC--CCcceeEecCcCccccCcc-ccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCC
Q 001161 684 KELNLSGCSKLKRLPEISS--GNIETMHLDGTALEELPSS-IECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGC 760 (1134)
Q Consensus 684 ~~L~Ls~~~~l~~~~~~~~--~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~ 760 (1134)
++|+|++|......|..+. ++|++|++++|.++.+|.. +..+++|++|++++|.+.+..|..+.++++|++|++++|
T Consensus 96 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 96 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred CEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC
Confidence 9999999986665555443 8999999999999999987 589999999999999988877888999999999999999
Q ss_pred CCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccc
Q 001161 761 SNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPES 840 (1134)
Q Consensus 761 ~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~ 840 (1134)
.+.+. .+..+++|+.|++++|.++.++ ..++|+.|++++|. +.... ...+++|+.|++++|.++.. ..
T Consensus 176 ~l~~~---~~~~l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~-l~~~~---~~~~~~L~~L~l~~n~l~~~-~~ 243 (390)
T 3o6n_A 176 RLTHV---DLSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNS-INVVR---GPVNVELTILKLQHNNLTDT-AW 243 (390)
T ss_dssp CCSBC---CGGGCTTCSEEECCSSCCSEEE----CCSSCSEEECCSSC-CCEEE---CCCCSSCCEEECCSSCCCCC-GG
T ss_pred cCCcc---ccccccccceeecccccccccC----CCCcceEEECCCCe-eeecc---ccccccccEEECCCCCCccc-HH
Confidence 87664 3567899999999999988653 45689999999998 43321 23458999999999999987 47
Q ss_pred cccccCcceeecCCCCcccc-ccchhCCCCCcEEEeccccCCCccCC---cCCCcCeEeccCCcccccccCCCCCCCCcc
Q 001161 841 LGLLSLVTELHLEGNNFERI-PESIIQLSNLEWLFIRYCERLQSLPK---LPCNLIWLDAHHCTALESLPGLFPSSNESY 916 (1134)
Q Consensus 841 l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~~l~~lp~---~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 916 (1134)
+..+++|++|+|++|.++.+ |..+..+++|+.|+|++|++.+ +|. .+++|+.|++++|.. ..++..+ ..+++
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l-~~~~~~~--~~l~~ 319 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL-LHVERNQ--PQFDR 319 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCC-CCCGGGH--HHHTT
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcc-eecCccc--cccCc
Confidence 88999999999999999965 7789999999999999998765 342 457999999999854 4444222 36789
Q ss_pred ceeeeccCCCCCCccccccchHHHHHHhHHHHHHhHHhhhhcC
Q 001161 917 LRTLYLSDNFKLDPNDLGGIVKGALQKIQLLATARLKEAREKI 959 (1134)
Q Consensus 917 L~~L~Ls~n~~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 959 (1134)
|+.|+|++| .++.+. +..+++|+.|++++|++.+
T Consensus 320 L~~L~L~~N------~i~~~~---~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 320 LENLYLDHN------SIVTLK---LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CSEEECCSS------CCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred CCEEECCCC------ccceeC---chhhccCCEEEcCCCCccc
Confidence 999999999 455442 4567889999999998875
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=2.6e-25 Score=277.04 Aligned_cols=405 Identities=16% Similarity=0.094 Sum_probs=241.2
Q ss_pred cccccCcccccccCccccccCCCccEEEEecCCcccCcceeeccCCCC-cCeeEEEeecCCCCCCCCCC-C-CcccceEe
Q 001161 538 ILLDMSKVKDINLHPNVFAKMPNLRILKFYNSMDEENKCKVSHFQGSE-FTEVRYLHWHGYPLKSLPSN-I-HPEKLVLL 614 (1134)
Q Consensus 538 i~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L 614 (1134)
...|.++.....++.+ + -++++.|++++|.. ....+..+. +++|++|++++|.++.+|+. | ++++|++|
T Consensus 34 ~~~~c~~~~l~~vP~~-l--p~~~~~LdLs~N~i-----~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L 105 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDN-L--PFSTKNLDLSFNPL-----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 105 (635)
T ss_dssp TEEECTTSCCSSCCSS-S--CTTCCEEECTTSCC-----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CEEECCCCCcCccCCC-C--CcCCCEEEeeCCCC-----CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEE
Confidence 3445554444444432 1 14799999998752 222223333 49999999999999999875 4 49999999
Q ss_pred eCCCCCccccchh-hhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCc-ccCCcc-CcCcccEEEecCC
Q 001161 615 EMPYSNIEQLFDI-VQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQ-SLPDRI-HLELLKELNLSGC 691 (1134)
Q Consensus 615 ~L~~n~i~~l~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~-~lp~~~-~l~~L~~L~Ls~~ 691 (1134)
+|++|+|+.++.. +.++.+|++|++++|+. ..++ +..|+++++|++|+|++|.+.. .+|..+ .+++|++|+|++|
T Consensus 106 ~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l-~~l~-~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 106 ILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp ECTTCCCCEECGGGGTTCTTCCEEECTTSCC-CCST-TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred EccCCcCCCCCHHHhcCCCCCCEEECCCCcC-CCCC-hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 9999999999764 78899999999999864 4443 4568999999999999998765 456665 6999999999998
Q ss_pred CCCCCcccccC------CCcceeEecCcCccccCccccCCCCCCeeeccCCcCCc-------------------------
Q 001161 692 SKLKRLPEISS------GNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLK------------------------- 740 (1134)
Q Consensus 692 ~~l~~~~~~~~------~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~------------------------- 740 (1134)
......+.... .....++++.|.+..++........+..|++.+|....
T Consensus 184 ~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 263 (635)
T 4g8a_A 184 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 263 (635)
T ss_dssp CCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred cccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccc
Confidence 65443332221 22335556666665544433222223333332221100
Q ss_pred ---------------------------------ccC----------------------cccCCCCCCcEEeecCCCCCCC
Q 001161 741 ---------------------------------SLP----------------------SGLCKLKSLDVLNIDGCSNLQR 765 (1134)
Q Consensus 741 ---------------------------------~lp----------------------~~l~~l~~L~~L~L~~~~~~~~ 765 (1134)
..+ ..+....+|+.|++.+|.+...
T Consensus 264 ~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 343 (635)
T 4g8a_A 264 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 343 (635)
T ss_dssp SCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSC
T ss_pred ccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCc
Confidence 000 0122334455555555543322
Q ss_pred CCc-------------------cccCCCCCcEEEccCCcCc---ccCccccCCCCCCEEEecCCCCCCCCcccccCCCCC
Q 001161 766 LPE-------------------ELGYLEALDSLHAVGTAIR---ELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQN 823 (1134)
Q Consensus 766 ~p~-------------------~~~~l~~L~~L~L~~n~i~---~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 823 (1134)
.+. ....+++|+.|++++|.+. ..+.....+.+|+.|++..|. .. .....+..+++
T Consensus 344 ~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~-~~~~~~~~l~~ 421 (635)
T 4g8a_A 344 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VI-TMSSNFLGLEQ 421 (635)
T ss_dssp CCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EE-EECSCCTTCTT
T ss_pred CcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccc-cc-ccccccccccc
Confidence 111 1112344444444444443 122233334444444444333 11 11223455666
Q ss_pred CCEEeccCCCCCCC--ccccccccCcceeecCCCCcccc-ccchhCCCCCcEEEeccccCCCc-cCC---cCCCcCeEec
Q 001161 824 LRDLNLNDCGITEL--PESLGLLSLVTELHLEGNNFERI-PESIIQLSNLEWLFIRYCERLQS-LPK---LPCNLIWLDA 896 (1134)
Q Consensus 824 L~~L~Ls~n~l~~l--p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~~l~~-lp~---~~~~L~~L~l 896 (1134)
|+.+++++|+.... +..+..+++|+.++++.|.+..+ |..+..+++|+.|+|++|+.... .|. .+++|+.|++
T Consensus 422 L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~L 501 (635)
T 4g8a_A 422 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 501 (635)
T ss_dssp CCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEEC
Confidence 66666666655532 23456667777777777777643 34566677777777777765443 332 3356777777
Q ss_pred cCCcccccccCCCCCCCCccceeeeccCCCCCCccccccchHHHHHHhHHHHHHhHHhhhhcCCCC
Q 001161 897 HHCTALESLPGLFPSSNESYLRTLYLSDNFKLDPNDLGGIVKGALQKIQLLATARLKEAREKISYP 962 (1134)
Q Consensus 897 ~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 962 (1134)
++|......+..+ ..+++|+.|+|++| .++++.+..|.++++|++|+|++|++++..|
T Consensus 502 s~N~L~~l~~~~f--~~l~~L~~L~Ls~N------~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 502 SQCQLEQLSPTAF--NSLSSLQVLNMSHN------NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559 (635)
T ss_dssp TTSCCCEECTTTT--TTCTTCCEEECTTS------CCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred CCCccCCcChHHH--cCCCCCCEEECCCC------cCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence 7765444334333 45677777777777 6667777777777777777777777766443
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=9.5e-25 Score=268.75 Aligned_cols=305 Identities=17% Similarity=0.143 Sum_probs=248.2
Q ss_pred CCcccceEeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCcc-CcCccc
Q 001161 606 IHPEKLVLLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRI-HLELLK 684 (1134)
Q Consensus 606 ~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~-~l~~L~ 684 (1134)
+.+.+++.|++++|.+..+|.. .+..+++|++|+|++|.+.+..|..+ .+++|+
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~-------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 102 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAA-------------------------LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 102 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTH-------------------------HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccCCCceEEEeeCCCCCCcCHH-------------------------HHccCCCCcEEECCCCCCCCCChHHhcCCCCCC
Confidence 3467778888888877776432 35678899999999998887777566 799999
Q ss_pred EEEecCCCCCCCcccccC--CCcceeEecCcCccccCcc-ccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCC
Q 001161 685 ELNLSGCSKLKRLPEISS--GNIETMHLDGTALEELPSS-IECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCS 761 (1134)
Q Consensus 685 ~L~Ls~~~~l~~~~~~~~--~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~ 761 (1134)
+|+|++|......|..+. ++|++|+|++|.+..+|.. ++++++|++|+|++|.+.+..|..+.++++|++|++++|.
T Consensus 103 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 103 KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence 999999986665555433 8999999999999999987 6999999999999999988888889999999999999998
Q ss_pred CCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCcccc
Q 001161 762 NLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESL 841 (1134)
Q Consensus 762 ~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l 841 (1134)
+.+. .++.+++|+.|++++|.++.+ ...++|+.|++++|. +..... ...++|+.|+|++|.++.. ..+
T Consensus 183 l~~~---~~~~l~~L~~L~l~~n~l~~l----~~~~~L~~L~ls~n~-l~~~~~---~~~~~L~~L~L~~n~l~~~-~~l 250 (597)
T 3oja_B 183 LTHV---DLSLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNS-INVVRG---PVNVELTILKLQHNNLTDT-AWL 250 (597)
T ss_dssp CSBC---CGGGCTTCSEEECCSSCCSEE----ECCTTCSEEECCSSC-CCEEEC---SCCSCCCEEECCSSCCCCC-GGG
T ss_pred CCCc---ChhhhhhhhhhhcccCccccc----cCCchhheeeccCCc-cccccc---ccCCCCCEEECCCCCCCCC-hhh
Confidence 7764 256689999999999998765 345689999999998 433222 2347899999999999985 678
Q ss_pred ccccCcceeecCCCCcccc-ccchhCCCCCcEEEeccccCCCccCC---cCCCcCeEeccCCcccccccCCCCCCCCccc
Q 001161 842 GLLSLVTELHLEGNNFERI-PESIIQLSNLEWLFIRYCERLQSLPK---LPCNLIWLDAHHCTALESLPGLFPSSNESYL 917 (1134)
Q Consensus 842 ~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~~l~~lp~---~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L 917 (1134)
+.+++|+.|+|++|.++.+ |..+..+++|+.|+|++|.+.+ +|. .+++|+.|++++|... .+|..+ ..+++|
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~--~~l~~L 326 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQ--PQFDRL 326 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGH--HHHTTC
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCccc--ccCCCC
Confidence 9999999999999999955 7789999999999999998765 343 3679999999998654 444332 468899
Q ss_pred eeeeccCCCCCCccccccchHHHHHHhHHHHHHhHHhhhhcCC
Q 001161 918 RTLYLSDNFKLDPNDLGGIVKGALQKIQLLATARLKEAREKIS 960 (1134)
Q Consensus 918 ~~L~Ls~n~~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~ 960 (1134)
+.|+|++| .++++. +..+++|+.|++++|++.+.
T Consensus 327 ~~L~L~~N------~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 327 ENLYLDHN------SIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp SEEECCSS------CCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CEEECCCC------CCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 99999999 555543 45677899999999988753
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=2.6e-25 Score=250.36 Aligned_cols=245 Identities=18% Similarity=0.272 Sum_probs=192.7
Q ss_pred CCCcEEEccCCCCCc--ccCCcc-CcCcccEEEecC-CCCCCCcccccC--CCcceeEecCcCcc-ccCccccCCCCCCe
Q 001161 658 NKLAILNLSGCGNLQ--SLPDRI-HLELLKELNLSG-CSKLKRLPEISS--GNIETMHLDGTALE-ELPSSIECLSKLSR 730 (1134)
Q Consensus 658 ~~L~~L~L~~~~~~~--~lp~~~-~l~~L~~L~Ls~-~~~l~~~~~~~~--~~L~~L~L~~n~i~-~lp~~~~~l~~L~~ 730 (1134)
.+++.|+|++|.+.+ .+|..+ ++++|++|+|++ |.....+|..+. ++|++|+|++|.+. .+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 456666676666666 566555 466777777764 444445554333 66777777777777 77778888999999
Q ss_pred eeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCC-CCcEEEccCCcCc-ccCccccCCCCCCEEEecCCC
Q 001161 731 LDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLE-ALDSLHAVGTAIR-ELPPSIVRLKSVRAIYFGRNR 808 (1134)
Q Consensus 731 L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~-~L~~L~L~~n~i~-~lp~~~~~l~~L~~L~l~~n~ 808 (1134)
|+|++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..++ +|+.|++++|.++ .+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999988888888888899999999999988888888888887 8999999999888 7777888887 9999999887
Q ss_pred CCCCCcccccCCCCCCCEEeccCCCCCCCccccccccCcceeecCCCCcc-ccccchhCCCCCcEEEeccccCCCccCCc
Q 001161 809 GLSLPITFSVDGLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFE-RIPESIIQLSNLEWLFIRYCERLQSLPKL 887 (1134)
Q Consensus 809 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~~l~~lp~~ 887 (1134)
+....+..+..+++|+.|+|++|.++..+..+..+++|++|+|++|+++ .+|..+..+++|+.|+|++|++.+.+|..
T Consensus 209 -l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 -LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp -EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred -ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 6666677788889999999999988876666888899999999999998 78888999999999999999888888754
Q ss_pred --CCCcCeEeccCCccccc
Q 001161 888 --PCNLIWLDAHHCTALES 904 (1134)
Q Consensus 888 --~~~L~~L~l~~c~~l~~ 904 (1134)
+++|+.|++++|+.+..
T Consensus 288 ~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp TTGGGSCGGGTCSSSEEES
T ss_pred ccccccChHHhcCCCCccC
Confidence 45677777777765543
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=6.9e-25 Score=246.94 Aligned_cols=249 Identities=20% Similarity=0.260 Sum_probs=185.7
Q ss_pred cceEeeCCCCCcc---ccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCcc-CcCcccE
Q 001161 610 KLVLLEMPYSNIE---QLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRI-HLELLKE 685 (1134)
Q Consensus 610 ~L~~L~L~~n~i~---~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~-~l~~L~~ 685 (1134)
+++.|+|++|.+. .++..+..+++|++|++++++.+... .|..+..+++|++|+|++|.+.+.+|..+ ++++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 4555555555555 34555666666666666642223221 14557777777777777777776677655 4666666
Q ss_pred EEecCCCCCCCcccccCCCcceeEecCcCcc-ccCccccCCCCCCeeeccCCcCCcccCcccCCCC-CCcEEeecCCCCC
Q 001161 686 LNLSGCSKLKRLPEISSGNIETMHLDGTALE-ELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLK-SLDVLNIDGCSNL 763 (1134)
Q Consensus 686 L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~-~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~-~L~~L~L~~~~~~ 763 (1134)
|+|++| .+. .+|..+..+++|++|+|++|.+.+.+|..+..++ +|++|++++|.+.
T Consensus 130 L~Ls~N----------------------~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 130 LDFSYN----------------------ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp EECCSS----------------------EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred EeCCCC----------------------ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 666664 444 5677788888888888888888778888888887 8888888888888
Q ss_pred CCCCccccCCCCCcEEEccCCcCc-ccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCC-CCcccc
Q 001161 764 QRLPEELGYLEALDSLHAVGTAIR-ELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGIT-ELPESL 841 (1134)
Q Consensus 764 ~~~p~~~~~l~~L~~L~L~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l 841 (1134)
+.+|..+..++ |+.|++++|.++ ..|..+..+++|+.|++++|. +....+. +..+++|++|+|++|.++ .+|..+
T Consensus 188 ~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE-ECCBGGG-CCCCTTCCEEECCSSCCEECCCGGG
T ss_pred ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc-eeeecCc-ccccCCCCEEECcCCcccCcCChHH
Confidence 78888888887 888888888888 455667788888888888887 4444333 677899999999999998 788899
Q ss_pred ccccCcceeecCCCCcc-ccccchhCCCCCcEEEeccccCCCccC
Q 001161 842 GLLSLVTELHLEGNNFE-RIPESIIQLSNLEWLFIRYCERLQSLP 885 (1134)
Q Consensus 842 ~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~~l~~lp 885 (1134)
..+++|++|+|++|+++ .+|.. .++++|+.|++++|+.+...|
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 99999999999999998 77754 888999999999998554433
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=3e-23 Score=252.77 Aligned_cols=262 Identities=21% Similarity=0.231 Sum_probs=181.2
Q ss_pred eeEEEeecCCCCCCCCCCCCcccceEeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccC
Q 001161 588 EVRYLHWHGYPLKSLPSNIHPEKLVLLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSG 667 (1134)
Q Consensus 588 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~ 667 (1134)
+++.|++++|.++.+|..+. ++|+.|+|++|+|+.+|. .+++|++|++++|+ +..+|. .+++|++|+|++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC-----CCTTCCEEEECS
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEEECcC
Confidence 35555555666666665543 566666666666665554 34556666666554 333332 556777777777
Q ss_pred CCCCcccCCccCcCcccEEEecCCCCCCCcccccCCCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccC
Q 001161 668 CGNLQSLPDRIHLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLC 747 (1134)
Q Consensus 668 ~~~~~~lp~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~ 747 (1134)
|.+.+ +|. .+++|+.|++++|. +..+|... ++|++|++++|.++.+|.. +++|+.|++++|.+.. +| .
T Consensus 111 N~l~~-l~~--~l~~L~~L~L~~N~-l~~lp~~l-~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~-l~---~ 178 (622)
T 3g06_A 111 NPLTH-LPA--LPSGLCKLWIFGNQ-LTSLPVLP-PGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTS-LP---M 178 (622)
T ss_dssp CCCCC-CCC--CCTTCCEEECCSSC-CSCCCCCC-TTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CC---C
T ss_pred CcCCC-CCC--CCCCcCEEECCCCC-CCcCCCCC-CCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCCC-Cc---c
Confidence 65544 444 45677777777764 33454432 6777888888887777753 4678888888887544 55 3
Q ss_pred CCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEE
Q 001161 748 KLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDL 827 (1134)
Q Consensus 748 ~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 827 (1134)
.+++|+.|++++|.+.+ +|. .+++|+.|++++|.++.+|.. +++|+.|++++|. ++... ..+++|+.|
T Consensus 179 ~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~-L~~lp----~~l~~L~~L 246 (622)
T 3g06_A 179 LPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNR-LTSLP----VLPSELKEL 246 (622)
T ss_dssp CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCC----CCCTTCCEE
T ss_pred cCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCCC---CCCCCEEEccCCc-cCcCC----CCCCcCcEE
Confidence 56788888888887654 443 247888888888888887753 4778888888887 44322 456888899
Q ss_pred eccCCCCCCCccccccccCcceeecCCCCccccccchhCCCCCcEEEeccccCCCccCC
Q 001161 828 NLNDCGITELPESLGLLSLVTELHLEGNNFERIPESIIQLSNLEWLFIRYCERLQSLPK 886 (1134)
Q Consensus 828 ~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp~ 886 (1134)
+|++|+|+.+|. .+++|+.|+|++|+|+.+|..+.++++|+.|+|++|++.+..|.
T Consensus 247 ~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 247 MVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp ECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred ECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 999998888887 56888999999999988888888899999999999888776654
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=2.7e-23 Score=236.23 Aligned_cols=286 Identities=14% Similarity=0.120 Sum_probs=170.6
Q ss_pred CCCccEEEEecCCcccCcceeeccCCCCcCeeEEEeecCCCCCCCCCC-C-CcccceEeeCCCCCcccc-chhhhccccc
Q 001161 558 MPNLRILKFYNSMDEENKCKVSHFQGSEFTEVRYLHWHGYPLKSLPSN-I-HPEKLVLLEMPYSNIEQL-FDIVQNHGKL 634 (1134)
Q Consensus 558 l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~i~~l-~~~~~~l~~L 634 (1134)
..+|+.+++.++.. ...|..+ .++|++|++++|.++.+|.. + .+++|++|+|++|.++.+ +..+..+++|
T Consensus 30 ~c~l~~l~~~~~~l------~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 30 QCHLRVVQCSDLGL------EKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102 (330)
T ss_dssp EEETTEEECTTSCC------CSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred cCCCeEEEecCCCc------cccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence 34678888866432 1222222 27899999999999999873 4 589999999999999887 5566666777
Q ss_pred hhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCcc-CcCcccEEEecCCCCCCCcccccCCCcceeEecCc
Q 001161 635 YQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRI-HLELLKELNLSGCSKLKRLPEISSGNIETMHLDGT 713 (1134)
Q Consensus 635 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~-~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n 713 (1134)
++|++++|. +..+|. .+ .++|++|++++|.+.+..+..+ ++++|++|++++|.....
T Consensus 103 ~~L~Ls~n~-l~~l~~--~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------- 160 (330)
T 1xku_A 103 ERLYLSKNQ-LKELPE--KM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------------- 160 (330)
T ss_dssp CEEECCSSC-CSBCCS--SC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG-----------------
T ss_pred CEEECCCCc-CCccCh--hh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc-----------------
Confidence 777776654 233321 12 2566666666666554443333 466666666666543210
Q ss_pred CccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCc-c
Q 001161 714 ALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPP-S 792 (1134)
Q Consensus 714 ~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~-~ 792 (1134)
...+..+..+++|+.|++++|.+. .+|..+. ++|++|++++|.+.+..|..+..+++|+.|++++|.++.++. .
T Consensus 161 --~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 235 (330)
T 1xku_A 161 --GIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235 (330)
T ss_dssp --GBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred --CcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh
Confidence 022334555666666666666533 3443332 566666666666555555566666666666666666665443 4
Q ss_pred ccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccc-cc------cccCcceeecCCCCccc---ccc
Q 001161 793 IVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPES-LG------LLSLVTELHLEGNNFER---IPE 862 (1134)
Q Consensus 793 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~------~l~~L~~L~Ls~n~l~~---lp~ 862 (1134)
+..+++|+.|++++|. +. ..+..+..+++|++|+|++|.++.++.. +. ..++|+.|++++|.+.. .|.
T Consensus 236 ~~~l~~L~~L~L~~N~-l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~ 313 (330)
T 1xku_A 236 LANTPHLRELHLNNNK-LV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313 (330)
T ss_dssp GGGSTTCCEEECCSSC-CS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGG
T ss_pred ccCCCCCCEEECCCCc-Cc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcc
Confidence 5556666666666665 33 2233455666666666666666665432 21 23567777777777752 245
Q ss_pred chhCCCCCcEEEecccc
Q 001161 863 SIIQLSNLEWLFIRYCE 879 (1134)
Q Consensus 863 ~l~~l~~L~~L~Ls~n~ 879 (1134)
.+..+.+|+.++|++|+
T Consensus 314 ~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 314 TFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GGTTCCCGGGEEC----
T ss_pred ccccccceeEEEecccC
Confidence 66777777888777764
No 54
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=3e-23 Score=236.03 Aligned_cols=289 Identities=13% Similarity=0.114 Sum_probs=184.2
Q ss_pred CCccEEEEecCCcccCcceeeccCCCCcCeeEEEeecCCCCCCCCC-CC-CcccceEeeCCCCCcccc-chhhhccccch
Q 001161 559 PNLRILKFYNSMDEENKCKVSHFQGSEFTEVRYLHWHGYPLKSLPS-NI-HPEKLVLLEMPYSNIEQL-FDIVQNHGKLY 635 (1134)
Q Consensus 559 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~ 635 (1134)
.+|+.++++++.. ...|..+ .++|++|++++|.++.+|. .+ .+++|++|+|++|.++.+ +..+..+++|+
T Consensus 33 c~l~~l~~~~~~l------~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 105 (332)
T 2ft3_A 33 CHLRVVQCSDLGL------KAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105 (332)
T ss_dssp EETTEEECCSSCC------SSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred ccCCEEECCCCCc------cccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCC
Confidence 4788898877532 1233222 3789999999999998865 34 589999999999999987 66788888899
Q ss_pred hhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCcc-CcCcccEEEecCCCCCC--CcccccC-CCcceeEec
Q 001161 636 QIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRI-HLELLKELNLSGCSKLK--RLPEISS-GNIETMHLD 711 (1134)
Q Consensus 636 ~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~-~l~~L~~L~Ls~~~~l~--~~~~~~~-~~L~~L~L~ 711 (1134)
+|++++|.. ..+|. .+. ++|++|++++|.+....+..+ ++++|++|++++|.... ..+.... .+|+.|+++
T Consensus 106 ~L~L~~n~l-~~l~~--~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~ 180 (332)
T 2ft3_A 106 KLYISKNHL-VEIPP--NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS 180 (332)
T ss_dssp EEECCSSCC-CSCCS--SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCC
T ss_pred EEECCCCcC-CccCc--ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECc
Confidence 998888753 34432 222 788888888887765544444 68888888888876532 2222222 367777777
Q ss_pred CcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCc
Q 001161 712 GTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPP 791 (1134)
Q Consensus 712 ~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~ 791 (1134)
+|.++.+|..+. ++|+.|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|.
T Consensus 181 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~ 258 (332)
T 2ft3_A 181 EAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA 258 (332)
T ss_dssp SSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT
T ss_pred CCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh
Confidence 777777766543 567777777777666655666777777777777776666666666667777777777777776666
Q ss_pred cccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccccccccCcceeecCCCCcc--c-cccchhCCC
Q 001161 792 SIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFE--R-IPESIIQLS 868 (1134)
Q Consensus 792 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~--~-lp~~l~~l~ 868 (1134)
.+..+++|+.|++++|. ++......+..+. .....++|+.|++++|.+. . .|..+..++
T Consensus 259 ~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~-----------------~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~ 320 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHTNN-ITKVGVNDFCPVG-----------------FGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320 (332)
T ss_dssp TGGGCTTCCEEECCSSC-CCBCCTTSSSCSS-----------------CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBC
T ss_pred hhhcCccCCEEECCCCC-CCccChhHccccc-----------------cccccccccceEeecCcccccccCcccccccc
Confidence 66666666666666665 3322222221110 0001244555666666554 2 234455566
Q ss_pred CCcEEEecccc
Q 001161 869 NLEWLFIRYCE 879 (1134)
Q Consensus 869 ~L~~L~Ls~n~ 879 (1134)
+|+.|++++|+
T Consensus 321 ~L~~l~l~~n~ 331 (332)
T 2ft3_A 321 DRLAIQFGNYK 331 (332)
T ss_dssp CSTTEEC----
T ss_pred hhhhhhccccc
Confidence 66666666554
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=241.39 Aligned_cols=272 Identities=19% Similarity=0.180 Sum_probs=196.5
Q ss_pred CeeEEEeecCCCCCCCCCCCCcccceEeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEcc
Q 001161 587 TEVRYLHWHGYPLKSLPSNIHPEKLVLLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLS 666 (1134)
Q Consensus 587 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~ 666 (1134)
+.....+.+++.++.+|..+. ++|++|++++|+++.++. ..+..+++|++|+|+
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~-------------------------~~~~~l~~L~~L~L~ 84 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISN-------------------------SDLQRCVNLQALVLT 84 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECT-------------------------TTTTTCTTCCEEECT
T ss_pred CCCeEeeCCCCCccccccccc-ccCcEEECCCCcCcccCH-------------------------HHhccCCCCCEEECC
Confidence 444457888889999998664 589999999998887743 234455555666665
Q ss_pred CCCCCcccCCcc-CcCcccEEEecCCCCCCCcccccC--CCcceeEecCcCccccCc--cccCCCCCCeeeccCCcCCc-
Q 001161 667 GCGNLQSLPDRI-HLELLKELNLSGCSKLKRLPEISS--GNIETMHLDGTALEELPS--SIECLSKLSRLDLADCKSLK- 740 (1134)
Q Consensus 667 ~~~~~~~lp~~~-~l~~L~~L~Ls~~~~l~~~~~~~~--~~L~~L~L~~n~i~~lp~--~~~~l~~L~~L~L~~n~~~~- 740 (1134)
+|.+.+..|..+ ++++|++|+|++|......+..+. ++|++|++++|.++.+|. .+..+++|++|++++|...+
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 85 SNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred CCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc
Confidence 555554444433 456666666666543322222111 566666666677777776 58889999999999985444
Q ss_pred ccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCcccc-CCCCCCEEEecCCCCCCCCcccc--
Q 001161 741 SLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIV-RLKSVRAIYFGRNRGLSLPITFS-- 817 (1134)
Q Consensus 741 ~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~-~l~~L~~L~l~~n~~~~~~~~~~-- 817 (1134)
..+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+..+|..+. .+++|+.|++++|. +.......
T Consensus 165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~ 243 (353)
T 2z80_A 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD-LDTFHFSELS 243 (353)
T ss_dssp ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB-CTTCCCC---
T ss_pred cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc-cccccccccc
Confidence 445678889999999999998888888888899999999999999887776544 48899999999887 44332221
Q ss_pred -cCCCCCCCEEeccCCCCC-----CCccccccccCcceeecCCCCccccccch-hCCCCCcEEEeccccCCCccC
Q 001161 818 -VDGLQNLRDLNLNDCGIT-----ELPESLGLLSLVTELHLEGNNFERIPESI-IQLSNLEWLFIRYCERLQSLP 885 (1134)
Q Consensus 818 -~~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~Ls~n~~l~~lp 885 (1134)
....+.++.++|+++.++ .+|..+..+++|+.|+|++|+++.+|..+ .++++|+.|+|++|++....|
T Consensus 244 ~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 244 TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ---CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 234567888888888877 36788888999999999999999998774 789999999999998766544
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=6.7e-23 Score=232.08 Aligned_cols=217 Identities=25% Similarity=0.374 Sum_probs=127.8
Q ss_pred CCCcEEEccCCCCCcccCCcc-CcCcccEEEecCCCCCCCcccccC--CCcceeEecCcCccccCccccCCCCCCeeecc
Q 001161 658 NKLAILNLSGCGNLQSLPDRI-HLELLKELNLSGCSKLKRLPEISS--GNIETMHLDGTALEELPSSIECLSKLSRLDLA 734 (1134)
Q Consensus 658 ~~L~~L~L~~~~~~~~lp~~~-~l~~L~~L~Ls~~~~l~~~~~~~~--~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~ 734 (1134)
++++.|+|++|.+. .+|..+ .+++|++|+|++|... .+|.... .+|++|+|++|.+..+|..+.++++|++|+|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 55666666666554 444433 4666666666665433 3333222 45555555555566666666677777777777
Q ss_pred CCcCCcccCcccCC---------CCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEec
Q 001161 735 DCKSLKSLPSGLCK---------LKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFG 805 (1134)
Q Consensus 735 ~n~~~~~lp~~l~~---------l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~ 805 (1134)
+|...+.+|..+.. +++|++|++++|.+. .+|..++.+++|++|++++|.++.+|..+..+++|+.|+++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence 76666666665443 666666666666544 55666666666666666666666666666666666666666
Q ss_pred CCCCCCCCcccccCCCCCCCEEeccCCCCC-CCccccccccCcceeecCCCCcc-ccccchhCCCCCcEEEeccc
Q 001161 806 RNRGLSLPITFSVDGLQNLRDLNLNDCGIT-ELPESLGLLSLVTELHLEGNNFE-RIPESIIQLSNLEWLFIRYC 878 (1134)
Q Consensus 806 ~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n 878 (1134)
+|. .....+..+.++++|+.|+|++|++. .+|..++.+++|++|+|++|++. .+|..+.++++|+.+++..+
T Consensus 238 ~n~-~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 238 GCT-ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TCT-TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCc-chhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 655 34444445556666666666665444 35555666666666666665443 55666666666666655543
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=5.1e-22 Score=241.87 Aligned_cols=268 Identities=25% Similarity=0.269 Sum_probs=186.2
Q ss_pred cceEeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCccCcCcccEEEec
Q 001161 610 KLVLLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRIHLELLKELNLS 689 (1134)
Q Consensus 610 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~Ls 689 (1134)
+++.|++++|+++.+|..+. ++|++|+|++|.+. .+|. .+++|++|+|+
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~----------------------------~~L~~L~L~~N~l~-~lp~--~l~~L~~L~Ls 89 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP----------------------------AHITTLVIPDNNLT-SLPA--LPPELRTLEVS 89 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC----------------------------TTCSEEEECSCCCS-CCCC--CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChhhC----------------------------CCCcEEEecCCCCC-CCCC--cCCCCCEEEcC
Confidence 46677777777666654332 45555555555433 3444 35566666666
Q ss_pred CCCCCCCcccccCCCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCcc
Q 001161 690 GCSKLKRLPEISSGNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEE 769 (1134)
Q Consensus 690 ~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~ 769 (1134)
+|. ++.+|. ..++|++|++++|.++.+|. .+++|+.|++++|.+. .+|. .+++|++|++++|.+.+ +|.
T Consensus 90 ~N~-l~~lp~-~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~- 158 (622)
T 3g06_A 90 GNQ-LTSLPV-LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPA- 158 (622)
T ss_dssp SCC-CSCCCC-CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSC-CCC-
T ss_pred CCc-CCcCCC-CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCC-cCCC---CCCCCCEEECcCCcCCC-cCC-
Confidence 654 334444 33566666666677777766 5677788888877644 3554 24778888888876553 343
Q ss_pred ccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccccccccCcce
Q 001161 770 LGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESLGLLSLVTE 849 (1134)
Q Consensus 770 ~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 849 (1134)
.+++|+.|++++|.++.+| ..+++|+.|++++|. ++.... .+++|+.|++++|.++.+|.. +++|+.
T Consensus 159 --~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~~l~~~---~~~L~~ 225 (622)
T 3g06_A 159 --LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQ-LASLPT----LPSELYKLWAYNNRLTSLPAL---PSGLKE 225 (622)
T ss_dssp --CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSSCCCC---CTTCCE
T ss_pred --ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCC-CCCCCC----ccchhhEEECcCCcccccCCC---CCCCCE
Confidence 3467888888888888877 456788888888887 443221 347888888988888888753 478899
Q ss_pred eecCCCCccccccchhCCCCCcEEEeccccCCCccCCcCCCcCeEeccCCcccccccCCCCCCCCccceeeeccCCCCCC
Q 001161 850 LHLEGNNFERIPESIIQLSNLEWLFIRYCERLQSLPKLPCNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDNFKLD 929 (1134)
Q Consensus 850 L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~ 929 (1134)
|+|++|+|+.+| ..+++|+.|+|++|++. .+|..+++|+.|++++|.. ..+|..+ ..+++|+.|+|++|
T Consensus 226 L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~-~lp~~~~~L~~L~Ls~N~L-~~lp~~l--~~l~~L~~L~L~~N---- 294 (622)
T 3g06_A 226 LIVSGNRLTSLP---VLPSELKELMVSGNRLT-SLPMLPSGLLSLSVYRNQL-TRLPESL--IHLSSETTVNLEGN---- 294 (622)
T ss_dssp EECCSSCCSCCC---CCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCC-CSCCGGG--GGSCTTCEEECCSC----
T ss_pred EEccCCccCcCC---CCCCcCcEEECCCCCCC-cCCcccccCcEEeCCCCCC-CcCCHHH--hhccccCEEEecCC----
Confidence 999999998888 45688999999998665 6777888899999998754 4555433 47889999999999
Q ss_pred ccccccchHHHHHHhH
Q 001161 930 PNDLGGIVKGALQKIQ 945 (1134)
Q Consensus 930 ~~~l~~~~~~~~~~l~ 945 (1134)
.+++..|..+.+++
T Consensus 295 --~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 295 --PLSERTLQALREIT 308 (622)
T ss_dssp --CCCHHHHHHHHHHH
T ss_pred --CCCCcCHHHHHhcc
Confidence 78888887777665
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=5.9e-23 Score=232.57 Aligned_cols=202 Identities=29% Similarity=0.435 Sum_probs=98.9
Q ss_pred cCcccEEEecCCCCCCCcccccC--CCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEee
Q 001161 680 LELLKELNLSGCSKLKRLPEISS--GNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNI 757 (1134)
Q Consensus 680 l~~L~~L~Ls~~~~l~~~~~~~~--~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L 757 (1134)
..+++.|+|++|... .+|.... .+|++|+|++|.+..+|..++.+++|++|+|++|.+. .+|..+.++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 456666666665433 3333222 4555555555555555555555555555555555544 44555555555555555
Q ss_pred cCCCCCCCCCccccC---------CCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEe
Q 001161 758 DGCSNLQRLPEELGY---------LEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLN 828 (1134)
Q Consensus 758 ~~~~~~~~~p~~~~~---------l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 828 (1134)
++|+..+.+|..+.. +++|++|++++|.++.+|..+..+++|+.|++++|. +... +..+..+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l-~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSAL-GPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCC-CGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcC-chhhccCCCCCEEE
Confidence 555555555544432 455555555555555444444444444444444444 2221 11244444444444
Q ss_pred ccCCCCC-CCccccccccCcceeecCCCCcc-ccccchhCCCCCcEEEeccccCCCccC
Q 001161 829 LNDCGIT-ELPESLGLLSLVTELHLEGNNFE-RIPESIIQLSNLEWLFIRYCERLQSLP 885 (1134)
Q Consensus 829 Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~~l~~lp 885 (1134)
|++|++. .+|..++.+++|++|+|++|++. .+|..+.++++|+.|+|++|++++.+|
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 4444433 23444444444444444444332 444444444444444444444444444
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=6.1e-24 Score=243.97 Aligned_cols=269 Identities=16% Similarity=0.130 Sum_probs=168.3
Q ss_pred cccEEEecCCCCCCCcccccCCCcceeEecCcCccccCc-cccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCC
Q 001161 682 LLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPS-SIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGC 760 (1134)
Q Consensus 682 ~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~ 760 (1134)
.....+++++ .++.+|.....+|++|++++|.++.+|. .+.++++|++|+|++|.+.+..|..+.++++|++|++++|
T Consensus 32 ~~~~c~~~~~-~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 32 RNGICKGSSG-SLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp TTSEEECCST-TCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCeEeeCCCC-CcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 3334444442 3445555444567777777777777766 5777778888888877766666666777778888888777
Q ss_pred CCCCCCCccccCCCCCcEEEccCCcCcccCc--cccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCC-
Q 001161 761 SNLQRLPEELGYLEALDSLHAVGTAIRELPP--SIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITEL- 837 (1134)
Q Consensus 761 ~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l- 837 (1134)
.+.+..+..+..+++|++|++++|.++.+|. .+..+++|+.|++++|.......+..+.++++|++|++++|.++.+
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence 7665444557777788888888887777776 5667778888888777434444455667777788888888777754
Q ss_pred ccccccccCcceeecCCCCccccccch-hCCCCCcEEEeccccCCCccCC------cCCCcCeEeccCCcccc----ccc
Q 001161 838 PESLGLLSLVTELHLEGNNFERIPESI-IQLSNLEWLFIRYCERLQSLPK------LPCNLIWLDAHHCTALE----SLP 906 (1134)
Q Consensus 838 p~~l~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~Ls~n~~l~~lp~------~~~~L~~L~l~~c~~l~----~~~ 906 (1134)
|..++.+++|++|++++|.++.+|..+ ..+++|+.|++++|++.+..+. ....++.+++.++.... .++
T Consensus 191 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~ 270 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270 (353)
T ss_dssp TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH
Confidence 667777777888888887777776543 3477778888877776553321 12334444444432211 111
Q ss_pred CCCCCCCCccceeeeccCCCCCCccccccchHHHHHHhHHHHHHhHHhhhhcC
Q 001161 907 GLFPSSNESYLRTLYLSDNFKLDPNDLGGIVKGALQKIQLLATARLKEAREKI 959 (1134)
Q Consensus 907 ~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 959 (1134)
..+ ..+++|+.|+|++| .++.+.+..|.++++|++|++++|++.+
T Consensus 271 ~~l--~~l~~L~~L~Ls~N------~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 271 KLL--NQISGLLELEFSRN------QLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHH--HTCTTCCEEECCSS------CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred HHH--hcccCCCEEECCCC------CCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 111 23445555555555 4444333344555555555555555544
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=4.1e-23 Score=232.08 Aligned_cols=244 Identities=20% Similarity=0.218 Sum_probs=148.8
Q ss_pred EEEeecCCCCCCCCCCCCcccceEeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCC
Q 001161 590 RYLHWHGYPLKSLPSNIHPEKLVLLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCG 669 (1134)
Q Consensus 590 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~ 669 (1134)
+.++++++.++.+|..+ +++|++|+|++|+++.++. ..+..+++|++|+|++|.
T Consensus 10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~-------------------------~~~~~l~~L~~L~L~~n~ 63 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPH-------------------------GVFDKLTQLTKLSLSSNG 63 (306)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCT-------------------------TTTTTCTTCSEEECCSSC
T ss_pred CEEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCH-------------------------hHhhccccCCEEECCCCc
Confidence 35677777888888755 3678888888877776532 234566677777777665
Q ss_pred CCcc--cCCcc-CcCcccEEEecCCCCCCCcccccCCCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccC-cc
Q 001161 670 NLQS--LPDRI-HLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLP-SG 745 (1134)
Q Consensus 670 ~~~~--lp~~~-~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp-~~ 745 (1134)
+... .|..+ .+++|++|+|++| .+..+|..+..+++|++|++++|.+.+..+ ..
T Consensus 64 l~~~~~~~~~~~~~~~L~~L~Ls~n----------------------~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 121 (306)
T 2z66_A 64 LSFKGCCSQSDFGTTSLKYLDLSFN----------------------GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121 (306)
T ss_dssp CCEEEEEEHHHHSCSCCCEEECCSC----------------------SEEEEEEEEETCTTCCEEECTTSEEESSTTTTT
T ss_pred cCcccCcccccccccccCEEECCCC----------------------ccccChhhcCCCCCCCEEECCCCcccccccchh
Confidence 5422 12222 4555555555554 444555556666666666666665444332 34
Q ss_pred cCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcc--cCccccCCCCCCEEEecCCCCCCCCcccccCCCCC
Q 001161 746 LCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRE--LPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQN 823 (1134)
Q Consensus 746 l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~--lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 823 (1134)
+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.. +|..+..+++|+.|++++|. +....+..+..+++
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 200 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSS 200 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTT
T ss_pred hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCC
Confidence 5566666666666666655556666666666666666666653 55566666666666666665 44444445566666
Q ss_pred CCEEeccCCCCCCCcc-ccccccCcceeecCCCCccc-cccchhCCC-CCcEEEeccccCCC
Q 001161 824 LRDLNLNDCGITELPE-SLGLLSLVTELHLEGNNFER-IPESIIQLS-NLEWLFIRYCERLQ 882 (1134)
Q Consensus 824 L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~-~L~~L~Ls~n~~l~ 882 (1134)
|+.|+|++|.++.++. .+..+++|+.|+|++|+++. .|..+..++ +|+.|+|++|++..
T Consensus 201 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 6667776666666543 45666677777777776663 344555553 67777777766554
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=4.7e-22 Score=235.41 Aligned_cols=243 Identities=23% Similarity=0.256 Sum_probs=178.0
Q ss_pred eeEEEeecCCCCCCCCCCCCcccceEeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccC
Q 001161 588 EVRYLHWHGYPLKSLPSNIHPEKLVLLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSG 667 (1134)
Q Consensus 588 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~ 667 (1134)
..+.++..+..++.+|..+ +++++.|+|++|+|+.++ +..|.++++|++|+|++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~-------------------------~~~~~~l~~L~~L~Ls~ 97 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIK-------------------------VNSFKHLRHLEILQLSR 97 (440)
T ss_dssp TSCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEEC-------------------------TTTTSSCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeC-------------------------HHHhhCCCCCCEEECCC
Confidence 4567788888888888766 477888888888887663 33566778888888888
Q ss_pred CCCCcccCCcc-CcCcccEEEecCCCCCCCcccccCCCcceeEecCcCccccCc-cccCCCCCCeeeccCCcCCcccCcc
Q 001161 668 CGNLQSLPDRI-HLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPS-SIECLSKLSRLDLADCKSLKSLPSG 745 (1134)
Q Consensus 668 ~~~~~~lp~~~-~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~~lp~~ 745 (1134)
|.+....+..+ ++++|++|+|++| .++.+|. .+..+++|++|+|++|.+....+..
T Consensus 98 n~i~~i~~~~~~~l~~L~~L~L~~n----------------------~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 155 (440)
T 3zyj_A 98 NHIRTIEIGAFNGLANLNTLELFDN----------------------RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYA 155 (440)
T ss_dssp SCCCEECGGGGTTCSSCCEEECCSS----------------------CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTT
T ss_pred CcCCccChhhccCCccCCEEECCCC----------------------cCCeeCHhHhhccccCceeeCCCCcccccCHHH
Confidence 77665554544 4666666666664 3444554 3777778888888887766655566
Q ss_pred cCCCCCCcEEeecCCCCCCCCCc-cccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCC
Q 001161 746 LCKLKSLDVLNIDGCSNLQRLPE-ELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNL 824 (1134)
Q Consensus 746 l~~l~~L~~L~L~~~~~~~~~p~-~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 824 (1134)
|.++++|++|++++|+..+.++. .+..+++|++|++++|.++.+|. +..+++|+.|+|++|. +....+..+.++++|
T Consensus 156 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 233 (440)
T 3zyj_A 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNH-LSAIRPGSFQGLMHL 233 (440)
T ss_dssp TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSC-CCEECTTTTTTCTTC
T ss_pred hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCc-cCccChhhhccCccC
Confidence 77788888888887666665554 57778888888888888887763 6777888888888886 565556677788888
Q ss_pred CEEeccCCCCCCC-ccccccccCcceeecCCCCcccccc-chhCCCCCcEEEeccccC
Q 001161 825 RDLNLNDCGITEL-PESLGLLSLVTELHLEGNNFERIPE-SIIQLSNLEWLFIRYCER 880 (1134)
Q Consensus 825 ~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~~ 880 (1134)
+.|+|++|.++.+ +..+..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|+.
T Consensus 234 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 8888888888865 4467778888888888888887764 456788888888888764
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=6.4e-22 Score=235.14 Aligned_cols=243 Identities=22% Similarity=0.248 Sum_probs=175.3
Q ss_pred eeEEEeecCCCCCCCCCCCCcccceEeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccC
Q 001161 588 EVRYLHWHGYPLKSLPSNIHPEKLVLLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSG 667 (1134)
Q Consensus 588 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~ 667 (1134)
..+.++..+..++.+|..+ +++|+.|+|++|+|+.++ +..|.++++|++|+|++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~-------------------------~~~~~~l~~L~~L~Ls~ 108 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQ-------------------------ADTFRHLHHLEVLQLGR 108 (452)
T ss_dssp SSCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEEC-------------------------TTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCC-CCCccEEECcCCcCceEC-------------------------HHHcCCCCCCCEEECCC
Confidence 4456778888888888765 468888888888887652 34566777888888888
Q ss_pred CCCCcccCCcc-CcCcccEEEecCCCCCCCcccccCCCcceeEecCcCccccCcc-ccCCCCCCeeeccCCcCCcccCcc
Q 001161 668 CGNLQSLPDRI-HLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSS-IECLSKLSRLDLADCKSLKSLPSG 745 (1134)
Q Consensus 668 ~~~~~~lp~~~-~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~ 745 (1134)
|.+.+..|..+ ++++|++|+|++| .++.+|.. +..+++|++|+|++|.+....+..
T Consensus 109 n~i~~~~~~~~~~l~~L~~L~L~~n----------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 166 (452)
T 3zyi_A 109 NSIRQIEVGAFNGLASLNTLELFDN----------------------WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYA 166 (452)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSS----------------------CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTT
T ss_pred CccCCcChhhccCcccCCEEECCCC----------------------cCCccChhhhcccCCCCEEECCCCCcceeCHhH
Confidence 77666555555 4666666666664 33445443 667777777777777766555556
Q ss_pred cCCCCCCcEEeecCCCCCCCCCc-cccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCC
Q 001161 746 LCKLKSLDVLNIDGCSNLQRLPE-ELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNL 824 (1134)
Q Consensus 746 l~~l~~L~~L~L~~~~~~~~~p~-~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 824 (1134)
|.++++|++|++++|+..+.++. .+..+++|++|++++|.++.+| .+..+++|+.|+|++|. +....+..+.++++|
T Consensus 167 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 244 (452)
T 3zyi_A 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNH-FPEIRPGSFHGLSSL 244 (452)
T ss_dssp TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSC-CSEECGGGGTTCTTC
T ss_pred HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCc-CcccCcccccCccCC
Confidence 77778888888877666665554 4777788888888888887775 46677788888888776 565666677788888
Q ss_pred CEEeccCCCCCCC-ccccccccCcceeecCCCCcccccc-chhCCCCCcEEEeccccC
Q 001161 825 RDLNLNDCGITEL-PESLGLLSLVTELHLEGNNFERIPE-SIIQLSNLEWLFIRYCER 880 (1134)
Q Consensus 825 ~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~~ 880 (1134)
+.|+|++|.++.+ |..+..+++|+.|+|++|+|+.+|. .+..+++|+.|+|++|+.
T Consensus 245 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 8888888888765 4567778888888888888887764 456778888888888764
No 63
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.88 E-value=2.2e-24 Score=209.42 Aligned_cols=134 Identities=19% Similarity=0.223 Sum_probs=92.7
Q ss_pred CCCCCCccEEEcccccccccchHHHHHHHHhh--CCCceEecC-CCCCCCcchHHHHHHHHhcccEEEEecCCcccchhh
Q 001161 16 TNPEVQYDVFLSFRGEDTRENFTSHLYSALSR--ESIETFIDD-DLRRGDEISQSLLDAIEASSISIIVFSERYASSRWC 92 (1134)
Q Consensus 16 ~~~~~~~dvFis~~~~D~r~~~~~~l~~~l~~--~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc 92 (1134)
....+.|||||||+++| ..|+.||+.+|++ .|+++|+|+ |+.+|+.|.++|.+||++||++|+|+|++|+.|.||
T Consensus 5 ~r~~k~YDvFISy~~~D--~~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc 82 (146)
T 3ub2_A 5 SRWSKDYDVCVCHSEED--LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC 82 (146)
T ss_dssp CTTSSSEEEEEECCGGG--HHHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred CCCCCcceEEEeCChhh--HHHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence 34678999999999999 6789999999998 599999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcEEEeEEeeecccc----cccccccchhhHHhhcccChhhHHHHHHHH
Q 001161 93 LDELLKILECKKEYAQIVIPACYRVDPSH----VRKQTGNFGDSFLKLGERFPDKMQSWRNAL 151 (1134)
Q Consensus 93 ~~El~~~~~~~~~~~~~v~pvf~~v~p~~----vr~q~g~~~~~~~~~~~~~~~~~~~w~~al 151 (1134)
+.|+..|+.+......+||||||+|++.+ +|.........+..--.+..+.|.+|++|+
T Consensus 83 ~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 83 KYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHHHHHHHHHHHhc
Confidence 99999999987433447889999998554 455443332222111112336677777654
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=1.5e-25 Score=267.63 Aligned_cols=335 Identities=16% Similarity=0.158 Sum_probs=189.0
Q ss_pred CeeEEEeecCCCCCCCCCC--C-CcccceEeeCCCCCcc-----ccchhhhccccchhhccccccCcCCCCCCCCCcCCC
Q 001161 587 TEVRYLHWHGYPLKSLPSN--I-HPEKLVLLEMPYSNIE-----QLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLN 658 (1134)
Q Consensus 587 ~~L~~L~l~~~~l~~lp~~--~-~l~~L~~L~L~~n~i~-----~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~ 658 (1134)
++|++|++++|.++..+.. + .+++|+.|+|++|.++ .++..+..+++|++|++++|......+ ......++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~-~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV-HCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH-HHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH-HHHHHHHh
Confidence 4678888888877654422 2 3677888888888877 345566667778888877765321110 01112233
Q ss_pred ----CCcEEEccCCCCCc----ccCCcc-CcCcccEEEecCCCCCCCccc----c-c--CCCcceeEecCcCccc-----
Q 001161 659 ----KLAILNLSGCGNLQ----SLPDRI-HLELLKELNLSGCSKLKRLPE----I-S--SGNIETMHLDGTALEE----- 717 (1134)
Q Consensus 659 ----~L~~L~L~~~~~~~----~lp~~~-~l~~L~~L~Ls~~~~l~~~~~----~-~--~~~L~~L~L~~n~i~~----- 717 (1134)
+|++|+|++|.+.. .+|..+ .+++|++|+|++|......+. . . ..+|++|++++|.++.
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 67778887776653 344444 577777777777653221111 1 0 1357777777776663
Q ss_pred cCccccCCCCCCeeeccCCcCCcccCcccC-----CCCCCcEEeecCCCCCCC----CCccccCCCCCcEEEccCCcCcc
Q 001161 718 LPSSIECLSKLSRLDLADCKSLKSLPSGLC-----KLKSLDVLNIDGCSNLQR----LPEELGYLEALDSLHAVGTAIRE 788 (1134)
Q Consensus 718 lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~-----~l~~L~~L~L~~~~~~~~----~p~~~~~l~~L~~L~L~~n~i~~ 788 (1134)
++..+..+++|++|++++|.+....+..+. .+++|++|++++|.+... ++..+..+++|++|++++|.++.
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 344456667777777777765433222221 245677777777765543 45556666777777777776653
Q ss_pred c-----Ccc-ccCCCCCCEEEecCCCCCCCC----cccccCCCCCCCEEeccCCCCCC-----Cccccc-cccCcceeec
Q 001161 789 L-----PPS-IVRLKSVRAIYFGRNRGLSLP----ITFSVDGLQNLRDLNLNDCGITE-----LPESLG-LLSLVTELHL 852 (1134)
Q Consensus 789 l-----p~~-~~~l~~L~~L~l~~n~~~~~~----~~~~~~~l~~L~~L~Ls~n~l~~-----lp~~l~-~l~~L~~L~L 852 (1134)
. ... ...+++|+.|++++|. ++.. .+..+..+++|++|+|++|.++. +...+. ..++|++|+|
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 2 122 2246677777777665 3321 22334456677777777776652 112111 2256777777
Q ss_pred CCCCccc-----cccchhCCCCCcEEEeccccCCCccC--------CcCCCcCeEeccCCcccc----cccCCCCCCCCc
Q 001161 853 EGNNFER-----IPESIIQLSNLEWLFIRYCERLQSLP--------KLPCNLIWLDAHHCTALE----SLPGLFPSSNES 915 (1134)
Q Consensus 853 s~n~l~~-----lp~~l~~l~~L~~L~Ls~n~~l~~lp--------~~~~~L~~L~l~~c~~l~----~~~~~~~~~~l~ 915 (1134)
++|.++. ++..+..+++|+.|+|++|++....+ ...++|+.|++++|.... .++..+ ..++
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l--~~~~ 398 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL--LANH 398 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH--HHCC
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHH--HhCC
Confidence 7776662 45556666777777777765443211 113466666666664322 222111 1345
Q ss_pred cceeeeccCC
Q 001161 916 YLRTLYLSDN 925 (1134)
Q Consensus 916 ~L~~L~Ls~n 925 (1134)
+|+.|+|++|
T Consensus 399 ~L~~L~l~~N 408 (461)
T 1z7x_W 399 SLRELDLSNN 408 (461)
T ss_dssp CCCEEECCSS
T ss_pred CccEEECCCC
Confidence 6666666666
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=4.5e-22 Score=221.03 Aligned_cols=221 Identities=22% Similarity=0.255 Sum_probs=136.8
Q ss_pred EEEeecCCCCCCCCCCCCcccceEeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCC
Q 001161 590 RYLHWHGYPLKSLPSNIHPEKLVLLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCG 669 (1134)
Q Consensus 590 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~ 669 (1134)
+.++++++.++.+|..+ +++|++|++++|.++.++ +..+..+++|++|+|++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~-------------------------~~~~~~~~~L~~L~l~~n~ 67 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVP-------------------------AASFRACRNLTILWLHSNV 67 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEEC-------------------------TTTTTTCTTCCEEECCSSC
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccC-------------------------HHHcccCCCCCEEECCCCc
Confidence 56777788888888655 567888888888777653 2345667777777777776
Q ss_pred CCcccCCcc-CcCcccEEEecCCCCCCCcccccCCCcceeEecCcCcccc-CccccCCCCCCeeeccCCcCCcccCcccC
Q 001161 670 NLQSLPDRI-HLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEEL-PSSIECLSKLSRLDLADCKSLKSLPSGLC 747 (1134)
Q Consensus 670 ~~~~lp~~~-~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~~lp~~l~ 747 (1134)
+.+..|..+ ++++|++|+|++|..++ .+ |..+..+++|++|++++|.+.+..|..+.
T Consensus 68 l~~~~~~~~~~l~~L~~L~l~~n~~l~---------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 126 (285)
T 1ozn_A 68 LARIDAAAFTGLALLEQLDLSDNAQLR---------------------SVDPATFHGLGRLHTLHLDRCGLQELGPGLFR 126 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCTTCC---------------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred cceeCHhhcCCccCCCEEeCCCCCCcc---------------------ccCHHHhcCCcCCCEEECCCCcCCEECHhHhh
Confidence 655545544 46666666666654232 23 33466667777777777766655566666
Q ss_pred CCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCcc-ccCCCCCCEEEecCCCCCCCCcccccCCCCCCCE
Q 001161 748 KLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPS-IVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRD 826 (1134)
Q Consensus 748 ~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 826 (1134)
++++|++|++++|.+.+..+..+..+++|++|++++|.++.+|.. +..+++|+.|++++|. +....+..+..+++|+.
T Consensus 127 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 205 (285)
T 1ozn_A 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMT 205 (285)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc-ccccCHhHccCcccccE
Confidence 677777777777666655555566667777777777766665543 5555666666666555 34333444555555555
Q ss_pred EeccCCCCCCCcc-ccccccCcceeecCCCCcc
Q 001161 827 LNLNDCGITELPE-SLGLLSLVTELHLEGNNFE 858 (1134)
Q Consensus 827 L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~ 858 (1134)
|+|++|.++.+|. .+..+++|+.|+|++|.+.
T Consensus 206 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred eeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 5555555555443 3455555555555555554
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=3.3e-25 Score=264.65 Aligned_cols=198 Identities=19% Similarity=0.175 Sum_probs=98.6
Q ss_pred CCcceeEecCcCccccC-cccc-----CCCCCCeeeccCCcCCcc----cCcccCCCCCCcEEeecCCCCCCCC-----C
Q 001161 703 GNIETMHLDGTALEELP-SSIE-----CLSKLSRLDLADCKSLKS----LPSGLCKLKSLDVLNIDGCSNLQRL-----P 767 (1134)
Q Consensus 703 ~~L~~L~L~~n~i~~lp-~~~~-----~l~~L~~L~L~~n~~~~~----lp~~l~~l~~L~~L~L~~~~~~~~~-----p 767 (1134)
++|+.|++++|.+.... ..+. .+++|++|++++|.+... ++..+..+++|++|++++|.+.... +
T Consensus 170 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 249 (461)
T 1z7x_W 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP 249 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHH
Confidence 45555555555544221 1111 244566666666654432 3444455566666666665543321 1
Q ss_pred ccccCCCCCcEEEccCCcCcc-----cCccccCCCCCCEEEecCCCCCCCCccccc-----CCCCCCCEEeccCCCCCC-
Q 001161 768 EELGYLEALDSLHAVGTAIRE-----LPPSIVRLKSVRAIYFGRNRGLSLPITFSV-----DGLQNLRDLNLNDCGITE- 836 (1134)
Q Consensus 768 ~~~~~l~~L~~L~L~~n~i~~-----lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~~l~~L~~L~Ls~n~l~~- 836 (1134)
..+..+++|++|++++|.++. ++..+..+++|+.|++++|. +.......+ ...++|++|+|++|.++.
T Consensus 250 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence 122245566666666666653 45555556666666666554 221111111 122466666666666653
Q ss_pred ----CccccccccCcceeecCCCCcccc-ccch----hC-CCCCcEEEeccccCCC----ccCCc---CCCcCeEeccCC
Q 001161 837 ----LPESLGLLSLVTELHLEGNNFERI-PESI----IQ-LSNLEWLFIRYCERLQ----SLPKL---PCNLIWLDAHHC 899 (1134)
Q Consensus 837 ----lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l----~~-l~~L~~L~Ls~n~~l~----~lp~~---~~~L~~L~l~~c 899 (1134)
++..+..+++|++|+|++|.++.. +..+ .. .++|+.|+|++|++.. .+|.. .++|++|++++|
T Consensus 329 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 329 CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp GHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred HHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 344555556666666666665532 1122 21 4566666666665543 33422 356666666665
Q ss_pred cc
Q 001161 900 TA 901 (1134)
Q Consensus 900 ~~ 901 (1134)
+.
T Consensus 409 ~i 410 (461)
T 1z7x_W 409 CL 410 (461)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=2.7e-21 Score=228.82 Aligned_cols=239 Identities=23% Similarity=0.288 Sum_probs=199.8
Q ss_pred ccEEEecCCCCCCCcccccCCCcceeEecCcCccccC-ccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCC
Q 001161 683 LKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELP-SSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCS 761 (1134)
Q Consensus 683 L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~ 761 (1134)
...++.++ ..+..+|.....+++.|+|++|.|..++ ..|.++++|++|+|++|.+....+..|.++++|++|+|++|.
T Consensus 45 ~~~v~c~~-~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 45 FSKVICVR-KNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp SCEEECCS-CCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCEEEeCC-CCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 45566555 4566777766678889999999999877 469999999999999999887777889999999999999998
Q ss_pred CCCCCCccccCCCCCcEEEccCCcCcccCc-cccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccc
Q 001161 762 NLQRLPEELGYLEALDSLHAVGTAIRELPP-SIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPES 840 (1134)
Q Consensus 762 ~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~ 840 (1134)
+....+..+..+++|++|+|++|.++.++. .+..+++|+.|++++|..+.......+.++++|++|+|++|+++.+|.
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~- 202 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN- 202 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-
Confidence 887777789999999999999999998876 677899999999998765666666678899999999999999999984
Q ss_pred cccccCcceeecCCCCcccc-ccchhCCCCCcEEEeccccCCCccCC---cCCCcCeEeccCCcccccccCCCCCCCCcc
Q 001161 841 LGLLSLVTELHLEGNNFERI-PESIIQLSNLEWLFIRYCERLQSLPK---LPCNLIWLDAHHCTALESLPGLFPSSNESY 916 (1134)
Q Consensus 841 l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~~l~~lp~---~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 916 (1134)
+..+++|++|+|++|+++.+ |..+.++++|+.|+|++|++....+. .+++|+.|++++|... .++... ...+++
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~-~~~l~~ 280 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDL-FTPLHH 280 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTT-TSSCTT
T ss_pred cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhH-hccccC
Confidence 78899999999999999977 67899999999999999998776664 3468999999997554 333221 246789
Q ss_pred ceeeeccCC
Q 001161 917 LRTLYLSDN 925 (1134)
Q Consensus 917 L~~L~Ls~n 925 (1134)
|+.|+|++|
T Consensus 281 L~~L~L~~N 289 (440)
T 3zyj_A 281 LERIHLHHN 289 (440)
T ss_dssp CCEEECCSS
T ss_pred CCEEEcCCC
Confidence 999999998
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=5e-23 Score=231.82 Aligned_cols=201 Identities=20% Similarity=0.199 Sum_probs=149.3
Q ss_pred CCCCCcEEEccCCCCCcccCCcc---CcCcccEEEecCCCCCCCcccccCCCcceeEecCcCccccCccccCC-----CC
Q 001161 656 HLNKLAILNLSGCGNLQSLPDRI---HLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSSIECL-----SK 727 (1134)
Q Consensus 656 ~l~~L~~L~L~~~~~~~~lp~~~---~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~~~~l-----~~ 727 (1134)
.+++|++|+|++|.+.+.+|..+ .+++|++|+|++| .++.+|..+..+ ++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N----------------------~l~~~~~~~~~l~~~~~~~ 150 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV----------------------SWATRDAWLAELQQWLKPG 150 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC----------------------BCSSSSSHHHHHHTTCCTT
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC----------------------CCcchhHHHHHHHHhhcCC
Confidence 46677777777777766666643 3566666666554 444445545554 78
Q ss_pred CCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCC--CCccc--cCCCCCcEEEccCCcCcccC---cc-ccCCCCC
Q 001161 728 LSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQR--LPEEL--GYLEALDSLHAVGTAIRELP---PS-IVRLKSV 799 (1134)
Q Consensus 728 L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~--~p~~~--~~l~~L~~L~L~~n~i~~lp---~~-~~~l~~L 799 (1134)
|++|+|++|.+.+..|..+.++++|++|++++|.+.+. +|..+ ..+++|++|++++|.++.++ .. +..+++|
T Consensus 151 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L 230 (312)
T 1wwl_A 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL 230 (312)
T ss_dssp CCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCC
T ss_pred CcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCC
Confidence 88888888887766667788888888888888876654 23333 77888888888888888443 22 3467889
Q ss_pred CEEEecCCCCCCCCc-ccccCCCCCCCEEeccCCCCCCCccccccccCcceeecCCCCccccccchhCCCCCcEEEeccc
Q 001161 800 RAIYFGRNRGLSLPI-TFSVDGLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPESIIQLSNLEWLFIRYC 878 (1134)
Q Consensus 800 ~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n 878 (1134)
+.|++++|. +.... ...+..+++|+.|+|++|.++.+|..+. ++|++|+|++|+|+.+|. +..+++|+.|+|++|
T Consensus 231 ~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 231 QGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp SEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTC
T ss_pred CEEECCCCc-CCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCC
Confidence 999999887 44433 2455678899999999999999988776 899999999999998886 889999999999999
Q ss_pred cCCC
Q 001161 879 ERLQ 882 (1134)
Q Consensus 879 ~~l~ 882 (1134)
++.+
T Consensus 307 ~l~~ 310 (312)
T 1wwl_A 307 PFLD 310 (312)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 8654
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=1.2e-21 Score=220.08 Aligned_cols=220 Identities=22% Similarity=0.217 Sum_probs=178.3
Q ss_pred CCCcEEEccCCCCCcccCCc-c-CcCcccEEEecCCCCCCCcccccCCCcceeEecCcCcccc---CccccCCCCCCeee
Q 001161 658 NKLAILNLSGCGNLQSLPDR-I-HLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEEL---PSSIECLSKLSRLD 732 (1134)
Q Consensus 658 ~~L~~L~L~~~~~~~~lp~~-~-~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~l---p~~~~~l~~L~~L~ 732 (1134)
++|++|+|++|.+.. +|.. + ++++|++|+|++| .+..+ |..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~-i~~~~~~~l~~L~~L~L~~n----------------------~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 28 SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSN----------------------GLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSS----------------------CCCEEEEEEHHHHSCSCCCEEE
T ss_pred CCCCEEECCCCccCc-cCHhHhhccccCCEEECCCC----------------------ccCcccCcccccccccccCEEE
Confidence 466777777766543 3332 2 4666666666664 44433 55677899999999
Q ss_pred ccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCC-ccccCCCCCcEEEccCCcCccc-CccccCCCCCCEEEecCCCCC
Q 001161 733 LADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLP-EELGYLEALDSLHAVGTAIREL-PPSIVRLKSVRAIYFGRNRGL 810 (1134)
Q Consensus 733 L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p-~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~ 810 (1134)
|++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+... +..+..+++|+.|++++|. +
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l 162 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-F 162 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE-E
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc-c
Confidence 9999855 577778999999999999998776655 6789999999999999999954 4567889999999999997 4
Q ss_pred CC-CcccccCCCCCCCEEeccCCCCCCC-ccccccccCcceeecCCCCcccccc-chhCCCCCcEEEeccccCCCccCC-
Q 001161 811 SL-PITFSVDGLQNLRDLNLNDCGITEL-PESLGLLSLVTELHLEGNNFERIPE-SIIQLSNLEWLFIRYCERLQSLPK- 886 (1134)
Q Consensus 811 ~~-~~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~~l~~lp~- 886 (1134)
.. ..+..+..+++|++|+|++|.++.+ |..+..+++|++|+|++|.++.++. .+..+++|+.|+|++|++.+..|.
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 43 4566788999999999999999986 6788999999999999999998875 688999999999999998887664
Q ss_pred ---cCCCcCeEeccCCccc
Q 001161 887 ---LPCNLIWLDAHHCTAL 902 (1134)
Q Consensus 887 ---~~~~L~~L~l~~c~~l 902 (1134)
.+++|+.|++++|+..
T Consensus 243 ~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCCCTTCCEEECTTCCEE
T ss_pred HHhhhccCCEEEccCCCee
Confidence 3468999999998653
No 70
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=3.7e-21 Score=228.57 Aligned_cols=239 Identities=24% Similarity=0.293 Sum_probs=199.0
Q ss_pred ccEEEecCCCCCCCcccccCCCcceeEecCcCccccC-ccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCC
Q 001161 683 LKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELP-SSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCS 761 (1134)
Q Consensus 683 L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~ 761 (1134)
...++.++ ..+..+|.....+++.|+|++|.|+.++ ..|.++++|+.|+|++|.+.+..|..|.++++|++|+|++|.
T Consensus 56 ~~~v~c~~-~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTR-RGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCS-SCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECC-CCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 44555554 3455666666678888888889998774 569999999999999999888888889999999999999999
Q ss_pred CCCCCCccccCCCCCcEEEccCCcCcccCc-cccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccc
Q 001161 762 NLQRLPEELGYLEALDSLHAVGTAIRELPP-SIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPES 840 (1134)
Q Consensus 762 ~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~ 840 (1134)
+....+..+..+++|++|+|++|.++.+|. .+.++++|+.|++++|..+.......+.++++|+.|+|++|+++.+| .
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~ 213 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-N 213 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-C
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-c
Confidence 887777789999999999999999998876 57789999999999876566655667889999999999999999987 4
Q ss_pred cccccCcceeecCCCCcccc-ccchhCCCCCcEEEeccccCCCccCC---cCCCcCeEeccCCcccccccCCCCCCCCcc
Q 001161 841 LGLLSLVTELHLEGNNFERI-PESIIQLSNLEWLFIRYCERLQSLPK---LPCNLIWLDAHHCTALESLPGLFPSSNESY 916 (1134)
Q Consensus 841 l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~~l~~lp~---~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 916 (1134)
+..+++|++|+|++|.++.+ |..+.++++|+.|+|++|++....|. .+++|+.|++++|.. ..++... ...+++
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~-~~~l~~ 291 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL-SSLPHDL-FTPLRY 291 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SCCCTTS-STTCTT
T ss_pred ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC-CccChHH-hccccC
Confidence 78899999999999999976 67899999999999999998776664 346899999999855 4444221 246789
Q ss_pred ceeeeccCC
Q 001161 917 LRTLYLSDN 925 (1134)
Q Consensus 917 L~~L~Ls~n 925 (1134)
|+.|+|++|
T Consensus 292 L~~L~L~~N 300 (452)
T 3zyi_A 292 LVELHLHHN 300 (452)
T ss_dssp CCEEECCSS
T ss_pred CCEEEccCC
Confidence 999999998
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=1.3e-21 Score=217.46 Aligned_cols=179 Identities=23% Similarity=0.338 Sum_probs=129.9
Q ss_pred CcceeEecCcCcccc-CccccCCCCCCeeeccCCc-CCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEc
Q 001161 704 NIETMHLDGTALEEL-PSSIECLSKLSRLDLADCK-SLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHA 781 (1134)
Q Consensus 704 ~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~-~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L 781 (1134)
+|++|++++|.++.+ |..+..+++|++|++++|. +....|..+..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus 57 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 136 (285)
T 1ozn_A 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEEC
Confidence 444444444555555 4557778888888888886 44444667778888888888888877777777778888888888
Q ss_pred cCCcCcccCcc-ccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCC-ccccccccCcceeecCCCCccc
Q 001161 782 VGTAIRELPPS-IVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITEL-PESLGLLSLVTELHLEGNNFER 859 (1134)
Q Consensus 782 ~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~ 859 (1134)
++|.++.++.. +..+++|+.|++++|. +....+..+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|+++.
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 137 QDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence 88888877654 6678888888888876 5544444577778888888888888765 6677778888888888888887
Q ss_pred ccc-chhCCCCCcEEEeccccCCCc
Q 001161 860 IPE-SIIQLSNLEWLFIRYCERLQS 883 (1134)
Q Consensus 860 lp~-~l~~l~~L~~L~Ls~n~~l~~ 883 (1134)
+|. .+..+++|+.|+|++|++...
T Consensus 216 ~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 216 LPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp CCHHHHTTCTTCCEEECCSSCEECS
T ss_pred CCHHHcccCcccCEEeccCCCccCC
Confidence 763 477788888888888876543
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=8.9e-23 Score=230.29 Aligned_cols=257 Identities=14% Similarity=0.078 Sum_probs=129.4
Q ss_pred ceEeeCCCCCccccchh-hhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCccCcCcccEEEec
Q 001161 611 LVLLEMPYSNIEQLFDI-VQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRIHLELLKELNLS 689 (1134)
Q Consensus 611 L~~L~L~~n~i~~l~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~Ls 689 (1134)
+..++++.+.+...+.. ...+++|+.|++++|... .++ +..+..+++|++|+|++|.+.+..| ...+++|++|+|+
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QIS-AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-CCC-HHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccC-cCC-HHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 34445555555544322 223345555555554322 111 2345666667777777666554433 3356666666666
Q ss_pred CCCCCCCcccccCCCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCcc
Q 001161 690 GCSKLKRLPEISSGNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEE 769 (1134)
Q Consensus 690 ~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~ 769 (1134)
+|. ++.++. .++|++|++++|.+.+..+. .+++|++|++++|.+.+..+..
T Consensus 89 ~n~----------------------l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~ 139 (317)
T 3o53_A 89 NNY----------------------VQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLD 139 (317)
T ss_dssp SSE----------------------EEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBC
T ss_pred CCc----------------------cccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchh
Confidence 643 333221 24455555555444333222 2344555555555544444444
Q ss_pred ccCCCCCcEEEccCCcCcccC-ccc-cCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccccccccCc
Q 001161 770 LGYLEALDSLHAVGTAIRELP-PSI-VRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESLGLLSLV 847 (1134)
Q Consensus 770 ~~~l~~L~~L~L~~n~i~~lp-~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 847 (1134)
+..+++|++|++++|.++.++ ..+ ..+++|+.|++++|. +... .....+++|++|+|++|.++.+|..+..+++|
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L 216 (317)
T 3o53_A 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDV--KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGV 216 (317)
T ss_dssp TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEE--ECCCCCTTCCEEECCSSCCCEECGGGGGGTTC
T ss_pred hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccc--ccccccccCCEEECCCCcCCcchhhhcccCcc
Confidence 455555555555555555332 222 234555555555554 2222 11223556666666666666665556666666
Q ss_pred ceeecCCCCccccccchhCCCCCcEEEeccccCC-CccCC---cCCCcCeEeccCCccc
Q 001161 848 TELHLEGNNFERIPESIIQLSNLEWLFIRYCERL-QSLPK---LPCNLIWLDAHHCTAL 902 (1134)
Q Consensus 848 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l-~~lp~---~~~~L~~L~l~~c~~l 902 (1134)
+.|+|++|+++.+|..+..+++|+.|+|++|++. ..+|. ..++|+.|++.+|+.+
T Consensus 217 ~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp SEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhc
Confidence 6666666666666666666666666666666655 33332 2234555555544433
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=1.3e-21 Score=220.76 Aligned_cols=219 Identities=16% Similarity=0.189 Sum_probs=107.7
Q ss_pred ccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCE
Q 001161 722 IECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRA 801 (1134)
Q Consensus 722 ~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~ 801 (1134)
+..+++|++|+|++|.+.+..+ +..+++|++|++++|.+.+. ...++|++|++++|.++.++.. .+++|+.
T Consensus 54 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~ 124 (317)
T 3o53_A 54 LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCS--RGQGKKN 124 (317)
T ss_dssp HTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCEEECCSSCCSEEEEC--CCSSCEE
T ss_pred hhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCEEECCCCccCCcCcc--ccCCCCE
Confidence 4444444444444444333222 44444444444444433211 1124444444444444433321 2344444
Q ss_pred EEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCC-cccc-ccccCcceeecCCCCccccccchhCCCCCcEEEecccc
Q 001161 802 IYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITEL-PESL-GLLSLVTELHLEGNNFERIPESIIQLSNLEWLFIRYCE 879 (1134)
Q Consensus 802 L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~ 879 (1134)
|++++|. +....+..+..+++|+.|+|++|.++.+ +..+ ..+++|++|+|++|.++.+|. ...+++|+.|+|++|+
T Consensus 125 L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~ 202 (317)
T 3o53_A 125 IYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNK 202 (317)
T ss_dssp EECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSC
T ss_pred EECCCCC-CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCc
Confidence 4444444 3333333444444444445544444432 2222 234445555555554444432 2234445555555444
Q ss_pred CCCccCC--cCCCcCeEeccCCcccccccCCCCCCCCccceeeeccCCCCCCccccc-cchHHHHHHhHHHHHHhHHhh-
Q 001161 880 RLQSLPK--LPCNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDNFKLDPNDLG-GIVKGALQKIQLLATARLKEA- 955 (1134)
Q Consensus 880 ~l~~lp~--~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~-~~~~~~~~~l~~L~~L~L~~n- 955 (1134)
+.+..+. .+++|+.|++++|.. ..++..+ ..+++|+.|++++| .+. +..+..+..++.|+.|++.+|
T Consensus 203 l~~l~~~~~~l~~L~~L~L~~N~l-~~l~~~~--~~l~~L~~L~l~~N------~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 203 LAFMGPEFQSAAGVTWISLRNNKL-VLIEKAL--RFSQNLEHFDLRGN------GFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp CCEECGGGGGGTTCSEEECTTSCC-CEECTTC--CCCTTCCEEECTTC------CCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCcchhhhcccCcccEEECcCCcc-cchhhHh--hcCCCCCEEEccCC------CccCcCHHHHHhccccceEEECCCch
Confidence 4322221 123455555555432 2344332 45678999999998 666 678889999999999999954
Q ss_pred hhcCC
Q 001161 956 REKIS 960 (1134)
Q Consensus 956 ~~~~~ 960 (1134)
.++|.
T Consensus 274 ~l~~~ 278 (317)
T 3o53_A 274 KLTGQ 278 (317)
T ss_dssp HHHSS
T ss_pred hccCC
Confidence 45553
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.85 E-value=1e-21 Score=221.05 Aligned_cols=238 Identities=19% Similarity=0.170 Sum_probs=180.4
Q ss_pred CcCcccEEEecCCCCCCCcccccCCCcceeEecCcCcc--ccCcccc-------CCCCCCeeeccCCcCCcccCccc--C
Q 001161 679 HLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALE--ELPSSIE-------CLSKLSRLDLADCKSLKSLPSGL--C 747 (1134)
Q Consensus 679 ~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~--~lp~~~~-------~l~~L~~L~L~~n~~~~~lp~~l--~ 747 (1134)
..++|+.|++++|.. .+|......|+.|+|++|.+. .+|..+. ++++|++|+|++|.+.+.+|..+ .
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred cCCCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 356677777777765 555544445778888888875 4565554 78999999999999888888876 8
Q ss_pred CCCCCcEEeecCCCCCCCCCccccCC-----CCCcEEEccCCcCcccC-ccccCCCCCCEEEecCCCCCCCC--c--ccc
Q 001161 748 KLKSLDVLNIDGCSNLQRLPEELGYL-----EALDSLHAVGTAIRELP-PSIVRLKSVRAIYFGRNRGLSLP--I--TFS 817 (1134)
Q Consensus 748 ~l~~L~~L~L~~~~~~~~~p~~~~~l-----~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~~~--~--~~~ 817 (1134)
.+++|++|++++|.+.+. |..++.+ ++|++|++++|.+..++ ..+..+++|+.|++++|. +.+. . ...
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~ 196 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP-ELGERGLISALC 196 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT-TCHHHHHHHHSC
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC-cCcchHHHHHHH
Confidence 899999999999988776 7777766 89999999999999776 678889999999999887 3322 1 223
Q ss_pred cCCCCCCCEEeccCCCCCCCcc----ccccccCcceeecCCCCccccc--cchhCCCCCcEEEeccccCCCccCC-cCCC
Q 001161 818 VDGLQNLRDLNLNDCGITELPE----SLGLLSLVTELHLEGNNFERIP--ESIIQLSNLEWLFIRYCERLQSLPK-LPCN 890 (1134)
Q Consensus 818 ~~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~~l~~lp~-~~~~ 890 (1134)
+..+++|++|+|++|.++.++. .+..+++|++|+|++|+++..+ ..+..+++|+.|+|++|++. .+|. .+++
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~~ 275 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAK 275 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCCSE
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhccCC
Confidence 3788999999999999885432 2356789999999999988654 45667889999999998876 6664 4468
Q ss_pred cCeEeccCCcccccccCCCCCCCCccceeeeccCC
Q 001161 891 LIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDN 925 (1134)
Q Consensus 891 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n 925 (1134)
|+.|++++|.. +.+|. ...+++|+.|+|++|
T Consensus 276 L~~L~Ls~N~l-~~~p~---~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 276 LSVLDLSYNRL-DRNPS---PDELPQVGNLSLKGN 306 (312)
T ss_dssp EEEEECCSSCC-CSCCC---TTTSCEEEEEECTTC
T ss_pred ceEEECCCCCC-CCChh---HhhCCCCCEEeccCC
Confidence 88888888754 44443 257788888888888
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=1.4e-21 Score=233.59 Aligned_cols=196 Identities=16% Similarity=0.084 Sum_probs=99.9
Q ss_pred CCcCCCCCcEEEccCCCCCcccCCccCcCcccEEEecCCCCCCCcccccCCCcceeEecCcCccccCccccCCCCCCeee
Q 001161 653 STQHLNKLAILNLSGCGNLQSLPDRIHLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSSIECLSKLSRLD 732 (1134)
Q Consensus 653 ~~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~ 732 (1134)
.+..+++|++|+|++|.+.+..| ...+++|++|+|++| .|+.+|. .++|+.|+
T Consensus 53 ~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N----------------------~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 53 DLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN----------------------YVQELLV----GPSIETLH 105 (487)
T ss_dssp GGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS----------------------EEEEEEE----CTTCCEEE
T ss_pred HHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC----------------------cCCCCCC----CCCcCEEE
Confidence 45555666666666655544433 224555555555554 3333332 14455555
Q ss_pred ccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcc-cCcccc-CCCCCCEEEecCCCCC
Q 001161 733 LADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRE-LPPSIV-RLKSVRAIYFGRNRGL 810 (1134)
Q Consensus 733 L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~-lp~~~~-~l~~L~~L~l~~n~~~ 810 (1134)
+++|.+.+..+. .+++|+.|++++|.+.+..|..++.+++|+.|+|++|.++. .|..+. .+++|+.|+|++|. +
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l 181 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-I 181 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-C
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-c
Confidence 555444333222 23445555555555444444445555555555555555553 223332 35555555555554 2
Q ss_pred CCCcccccCCCCCCCEEeccCCCCCCCccccccccCcceeecCCCCccccccchhCCCCCcEEEeccccCC
Q 001161 811 SLPITFSVDGLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPESIIQLSNLEWLFIRYCERL 881 (1134)
Q Consensus 811 ~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l 881 (1134)
+.. .....+++|+.|+|++|.++.+|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|++.
T Consensus 182 ~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 182 YDV--KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CEE--ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred ccc--cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 222 112235556666666666665555555666666666666666666655556666666666666554
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=4.1e-21 Score=229.45 Aligned_cols=231 Identities=19% Similarity=0.149 Sum_probs=180.0
Q ss_pred CCCCCcEEEccCCCCCcccCCcc-CcCcccEEEecCCCCCCCcccccCCCcceeEecCcCccccCccccCCCCCCeeecc
Q 001161 656 HLNKLAILNLSGCGNLQSLPDRI-HLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSSIECLSKLSRLDLA 734 (1134)
Q Consensus 656 ~l~~L~~L~L~~~~~~~~lp~~~-~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~ 734 (1134)
.+++|++|+|++|.+.+..|..+ .+++|++|+|++| .+..+++ +..+++|++|+|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N----------------------~l~~~~~-l~~l~~L~~L~Ls 88 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN----------------------VLYETLD-LESLSTLRTLDLN 88 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS----------------------CCEEEEE-CTTCTTCCEEECC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC----------------------CCCCCcc-cccCCCCCEEEec
Confidence 44577888888877766555555 5677777766664 4444444 8899999999999
Q ss_pred CCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCccc-CccccCCCCCCEEEecCCCCCCCC
Q 001161 735 DCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIREL-PPSIVRLKSVRAIYFGRNRGLSLP 813 (1134)
Q Consensus 735 ~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~ 813 (1134)
+|.+.+ +| ..++|++|++++|.+.+..+. .+++|+.|++++|.++.+ |..+..+++|+.|++++|. +...
T Consensus 89 ~N~l~~-l~----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~ 159 (487)
T 3oja_A 89 NNYVQE-LL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTV 159 (487)
T ss_dssp SSEEEE-EE----ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEE
T ss_pred CCcCCC-CC----CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCc
Confidence 998654 33 238999999999998776554 468999999999999976 5578889999999999998 6665
Q ss_pred cccccC-CCCCCCEEeccCCCCCCCccccccccCcceeecCCCCccccccchhCCCCCcEEEeccccCCCccCC---cCC
Q 001161 814 ITFSVD-GLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPESIIQLSNLEWLFIRYCERLQSLPK---LPC 889 (1134)
Q Consensus 814 ~~~~~~-~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp~---~~~ 889 (1134)
.+..+. .+++|+.|+|++|.++.+|. ...+++|+.|+|++|.++.+|..+..+++|+.|+|++|.+.+ +|. .++
T Consensus 160 ~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~ 237 (487)
T 3oja_A 160 NFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQ 237 (487)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCT
T ss_pred ChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCC
Confidence 555554 79999999999999998865 446999999999999999999899999999999999998774 664 346
Q ss_pred CcCeEeccCCccc-ccccCCCCCCCCccceeeec
Q 001161 890 NLIWLDAHHCTAL-ESLPGLFPSSNESYLRTLYL 922 (1134)
Q Consensus 890 ~L~~L~l~~c~~l-~~~~~~~~~~~l~~L~~L~L 922 (1134)
+|+.|++++|+.. ..++..+ ..++.|+.+++
T Consensus 238 ~L~~L~l~~N~l~c~~~~~~~--~~l~~L~~l~~ 269 (487)
T 3oja_A 238 NLEHFDLRGNGFHCGTLRDFF--SKNQRVQTVAK 269 (487)
T ss_dssp TCCEEECTTCCBCHHHHHHHH--TTCHHHHHHHH
T ss_pred CCCEEEcCCCCCcCcchHHHH--HhCCCCcEEec
Confidence 8999999998765 2333222 24555555554
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=5.6e-20 Score=198.36 Aligned_cols=206 Identities=18% Similarity=0.148 Sum_probs=162.2
Q ss_pred CCCCcccccCCCcceeEecCcCccccCc-cccCCCCCCeeeccCCc-CCcccCcccCCCCCCcEEeecC-CCCCCCCCcc
Q 001161 693 KLKRLPEISSGNIETMHLDGTALEELPS-SIECLSKLSRLDLADCK-SLKSLPSGLCKLKSLDVLNIDG-CSNLQRLPEE 769 (1134)
Q Consensus 693 ~l~~~~~~~~~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~-~~~~lp~~l~~l~~L~~L~L~~-~~~~~~~p~~ 769 (1134)
.++.+|. ...+++.|++++|.++.+|. .+..+++|++|++++|. +....+..|.++++|++|++++ |.+....+..
T Consensus 22 ~l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 22 DIQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp SCSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred CccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 3666776 55688888888888988887 58899999999999997 5444455788999999999998 7776666678
Q ss_pred ccCCCCCcEEEccCCcCcccCccccCCCCCC---EEEecCCCCCCCCcccccCCCCCCC-EEeccCCCCCCCcccccccc
Q 001161 770 LGYLEALDSLHAVGTAIRELPPSIVRLKSVR---AIYFGRNRGLSLPITFSVDGLQNLR-DLNLNDCGITELPESLGLLS 845 (1134)
Q Consensus 770 ~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~---~L~l~~n~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~lp~~l~~l~ 845 (1134)
|..+++|++|++++|.++.+|. +..+++|+ .|++++|..+....+..+.++++|+ .|++++|+++.+|......+
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~ 179 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT 179 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTC
T ss_pred hCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCC
Confidence 8899999999999999998887 77788887 9999988226655556688889999 99999999988877654458
Q ss_pred CcceeecCCCC-ccccc-cchhCC-CCCcEEEeccccCCCccCCcCCCcCeEeccCCc
Q 001161 846 LVTELHLEGNN-FERIP-ESIIQL-SNLEWLFIRYCERLQSLPKLPCNLIWLDAHHCT 900 (1134)
Q Consensus 846 ~L~~L~Ls~n~-l~~lp-~~l~~l-~~L~~L~Ls~n~~l~~lp~~~~~L~~L~l~~c~ 900 (1134)
+|+.|+|++|+ ++.+| ..+.++ ++|+.|+|++|++...-+..+++|+.|++++|.
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTW 237 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC-
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCcc
Confidence 89999999994 88886 457778 889999998887764333456677777776653
No 78
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=1.6e-22 Score=249.69 Aligned_cols=397 Identities=16% Similarity=0.160 Sum_probs=260.0
Q ss_pred ccccccCCCccEEEEecCCcccCcceee-ccCCC----------CcCeeEEEeecCCCCCCC-CCCC-C-c-ccceEeeC
Q 001161 552 PNVFAKMPNLRILKFYNSMDEENKCKVS-HFQGS----------EFTEVRYLHWHGYPLKSL-PSNI-H-P-EKLVLLEM 616 (1134)
Q Consensus 552 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~-~~~~~----------~~~~L~~L~l~~~~l~~l-p~~~-~-l-~~L~~L~L 616 (1134)
+..+..+++|+.|++.++........+. ...+. .+++|++|++++|.+... +..+ . . .+|++|+|
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 3557788999999997753211000000 00000 237899999998865421 1111 1 2 44999999
Q ss_pred CCCC-cc--ccchhhhccccchhhccccccCcCCCC--CCCCCcCCCCCcEEEccCCCCC----cccCCcc-CcCcccEE
Q 001161 617 PYSN-IE--QLFDIVQNHGKLYQIITAAFNFFSKTP--TPLSTQHLNKLAILNLSGCGNL----QSLPDRI-HLELLKEL 686 (1134)
Q Consensus 617 ~~n~-i~--~l~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~l~~L~~L~L~~~~~~----~~lp~~~-~l~~L~~L 686 (1134)
++|. +. .++.....+++|++|++++|....... .+..+..+++|++|+|++|... ..++..+ ++++|++|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 8876 22 233344578899999998885322110 0123457888999999888775 2333333 57889999
Q ss_pred EecCCCCCCCcccccC--CCcceeEecCcCcc----ccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCC
Q 001161 687 NLSGCSKLKRLPEISS--GNIETMHLDGTALE----ELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGC 760 (1134)
Q Consensus 687 ~Ls~~~~l~~~~~~~~--~~L~~L~L~~n~i~----~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~ 760 (1134)
+|++|.... ++.... ++|+.|+++..... ..+..+..+++|+.|+++++. ...+|..+..+++|++|++++|
T Consensus 226 ~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~ 303 (592)
T 3ogk_B 226 KVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYA 303 (592)
T ss_dssp ECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTC
T ss_pred eccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCC
Confidence 999875433 443333 78888888753222 344567788889999888853 4567777778899999999998
Q ss_pred CCCCCC-CccccCCCCCcEEEccCCcCc--ccCccccCCCCCCEEEecC----------CCCCCCC-cccccCCCCCCCE
Q 001161 761 SNLQRL-PEELGYLEALDSLHAVGTAIR--ELPPSIVRLKSVRAIYFGR----------NRGLSLP-ITFSVDGLQNLRD 826 (1134)
Q Consensus 761 ~~~~~~-p~~~~~l~~L~~L~L~~n~i~--~lp~~~~~l~~L~~L~l~~----------n~~~~~~-~~~~~~~l~~L~~ 826 (1134)
.+.... +..+..+++|+.|+++ +.+. .++.....+++|+.|++++ +..++.. .......+++|++
T Consensus 304 ~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 382 (592)
T 3ogk_B 304 LLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382 (592)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred cCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence 854332 2446788999999998 4444 3444456788999999994 2223322 1122346899999
Q ss_pred EeccCCCCCC-Ccccccc-ccCcceeecC----CCCcccc------ccchhCCCCCcEEEeccccC--CCc----cCCcC
Q 001161 827 LNLNDCGITE-LPESLGL-LSLVTELHLE----GNNFERI------PESIIQLSNLEWLFIRYCER--LQS----LPKLP 888 (1134)
Q Consensus 827 L~Ls~n~l~~-lp~~l~~-l~~L~~L~Ls----~n~l~~l------p~~l~~l~~L~~L~Ls~n~~--l~~----lp~~~ 888 (1134)
|+++.|+++. .+..++. +++|+.|+|+ .|.++.. +..+.++++|+.|+|++|.. ... +....
T Consensus 383 L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~ 462 (592)
T 3ogk_B 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS 462 (592)
T ss_dssp EEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSC
T ss_pred EEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhC
Confidence 9998888884 3445544 8899999996 6677754 34467799999999987652 221 22346
Q ss_pred CCcCeEeccCCcccc-cccCCCCCCCCccceeeeccCCCCCCccccccc-hHHHHHHhHHHHHHhHHhhhhcC
Q 001161 889 CNLIWLDAHHCTALE-SLPGLFPSSNESYLRTLYLSDNFKLDPNDLGGI-VKGALQKIQLLATARLKEAREKI 959 (1134)
Q Consensus 889 ~~L~~L~l~~c~~l~-~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~~-~~~~~~~l~~L~~L~L~~n~~~~ 959 (1134)
++|+.|++++|.... .++.. ...+++|+.|+|++| .+++. .+.....+++|+.|+|++|+++.
T Consensus 463 ~~L~~L~L~~n~l~~~~~~~~--~~~~~~L~~L~l~~n------~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 463 PNVRWMLLGYVGESDEGLMEF--SRGCPNLQKLEMRGC------CFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp TTCCEEEECSCCSSHHHHHHH--HTCCTTCCEEEEESC------CCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred ccceEeeccCCCCCHHHHHHH--HhcCcccCeeeccCC------CCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 789999999886432 11111 136788999999999 44433 44556788999999999998764
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=6.3e-19 Score=193.82 Aligned_cols=197 Identities=23% Similarity=0.301 Sum_probs=126.5
Q ss_pred cccEEEecCCCCCCCcccccCCCcceeEecCcCccccCc-cccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCC
Q 001161 682 LLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPS-SIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGC 760 (1134)
Q Consensus 682 ~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~ 760 (1134)
+++.++++++. ++.+|.....+++.|+|++|.+..+|. .+.++++|++|+|++|.+....+..+.++++|++|++++|
T Consensus 17 ~~~~l~~~~~~-l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSC-CSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCC-CCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 34555555533 334444444566666666666666665 4777777777777777655444444566777777777777
Q ss_pred CCCCCCCccccCCCCCcEEEccCCcCcccCcc-ccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCcc
Q 001161 761 SNLQRLPEELGYLEALDSLHAVGTAIRELPPS-IVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPE 839 (1134)
Q Consensus 761 ~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~ 839 (1134)
.+.+..+..+..+++|++|++++|.++.++.. +..+++|+.|++++|. +....+..+..+++|+.|+|++|.++.++.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 76665556667777777777777777766543 4566777777777765 444444456666777777777777776654
Q ss_pred -ccccccCcceeecCCCCcccccc-chhCCCCCcEEEeccccC
Q 001161 840 -SLGLLSLVTELHLEGNNFERIPE-SIIQLSNLEWLFIRYCER 880 (1134)
Q Consensus 840 -~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~~ 880 (1134)
.+..+++|++|+|++|+++.+|. .+..+++|+.|+|++|+.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 35666777777777777776664 355666677777766654
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=2.8e-19 Score=197.44 Aligned_cols=161 Identities=18% Similarity=0.182 Sum_probs=90.3
Q ss_pred cccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcc--cCccccCCCC
Q 001161 721 SIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRE--LPPSIVRLKS 798 (1134)
Q Consensus 721 ~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~--lp~~~~~l~~ 798 (1134)
.+..+++|++|+|++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.++. +|..+..+++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~ 150 (276)
T 2z62_A 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150 (276)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred HccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCC
Confidence 35555666666666665555555555566666666666665555444455566666666666666654 4555555666
Q ss_pred CCEEEecCCCCCCCCcccccCCCCCCC----EEeccCCCCCCCccccccccCcceeecCCCCccccccc-hhCCCCCcEE
Q 001161 799 VRAIYFGRNRGLSLPITFSVDGLQNLR----DLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPES-IIQLSNLEWL 873 (1134)
Q Consensus 799 L~~L~l~~n~~~~~~~~~~~~~l~~L~----~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L 873 (1134)
|+.|++++|. +....+..+..+++|+ .|++++|.++.++.......+|+.|+|++|+++.+|.. +..+++|+.|
T Consensus 151 L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 229 (276)
T 2z62_A 151 LEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKI 229 (276)
T ss_dssp CCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEE
T ss_pred CCEEECCCCC-CCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEE
Confidence 6666666655 3333333343344444 56666666665555444444566666666666655543 3556666666
Q ss_pred EeccccCCC
Q 001161 874 FIRYCERLQ 882 (1134)
Q Consensus 874 ~Ls~n~~l~ 882 (1134)
+|++|++..
T Consensus 230 ~l~~N~~~c 238 (276)
T 2z62_A 230 WLHTNPWDC 238 (276)
T ss_dssp ECCSSCBCC
T ss_pred EccCCcccc
Confidence 666665443
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=3.6e-19 Score=196.59 Aligned_cols=206 Identities=22% Similarity=0.241 Sum_probs=104.3
Q ss_pred cccccCCCcceeEecCcCccccCc-cccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCC
Q 001161 697 LPEISSGNIETMHLDGTALEELPS-SIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEA 775 (1134)
Q Consensus 697 ~~~~~~~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~ 775 (1134)
+|.....+++.|++++|.++.++. .+.++++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++
T Consensus 22 ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 22 IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp CCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred cCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence 333333455555555555555554 4556666666666666555444445556666666666666555555555555666
Q ss_pred CcEEEccCCcCcccCc-cccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCc-cccccccCcc----e
Q 001161 776 LDSLHAVGTAIRELPP-SIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELP-ESLGLLSLVT----E 849 (1134)
Q Consensus 776 L~~L~L~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~----~ 849 (1134)
|++|++++|.+..++. .+..+++|+.|++++|.......+..+..+++|+.|+|++|.++.++ ..+..+++|+ .
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEE
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccccee
Confidence 6666666665554443 34445555555555554212122334444455555555555544432 2333333333 4
Q ss_pred eecCCCCccccccchhCCCCCcEEEeccccCCCccCCcCCCcCeEeccCCcccccccCCCCCCCCccceeeeccCC
Q 001161 850 LHLEGNNFERIPESIIQLSNLEWLFIRYCERLQSLPKLPCNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDN 925 (1134)
Q Consensus 850 L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n 925 (1134)
|++++|.++.+|.......+ |+.|++++|.. +.++... ...+++|+.|+|++|
T Consensus 182 L~ls~n~l~~~~~~~~~~~~---------------------L~~L~L~~n~l-~~~~~~~-~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 182 LDLSLNPMNFIQPGAFKEIR---------------------LKELALDTNQL-KSVPDGI-FDRLTSLQKIWLHTN 234 (276)
T ss_dssp EECCSSCCCEECTTSSCSCC---------------------EEEEECCSSCC-SCCCTTT-TTTCCSCCEEECCSS
T ss_pred eecCCCcccccCccccCCCc---------------------ccEEECCCCce-eecCHhH-hcccccccEEEccCC
Confidence 44445544444433333334 55555555432 2222111 135677788888777
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=8.6e-19 Score=194.51 Aligned_cols=195 Identities=22% Similarity=0.246 Sum_probs=118.7
Q ss_pred cCcccEEEecCCCCCCCcccccCCCcceeEecCcCccccC-ccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeec
Q 001161 680 LELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELP-SSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNID 758 (1134)
Q Consensus 680 l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~ 758 (1134)
+++|++++++++. ++.+|.....+++.|+|++|.+..++ ..+..+++|+.|+|++|.+....+ ...+++|++|+++
T Consensus 9 l~~l~~l~~~~~~-l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls 85 (290)
T 1p9a_G 9 VASHLEVNCDKRN-LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLS 85 (290)
T ss_dssp STTCCEEECTTSC-CSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECC
T ss_pred cCCccEEECCCCC-CCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECC
Confidence 3344444444422 22333333345555555555565553 346677777777777776544322 2566777777777
Q ss_pred CCCCCCCCCccccCCCCCcEEEccCCcCcccCc-cccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCC
Q 001161 759 GCSNLQRLPEELGYLEALDSLHAVGTAIRELPP-SIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITEL 837 (1134)
Q Consensus 759 ~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l 837 (1134)
+|.+. .+|..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|. +....+..+..+++|+.|+|++|+++.+
T Consensus 86 ~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp SSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCcc
Confidence 76554 556666667777777777777776653 45666777777777665 4444445566667777777777777766
Q ss_pred ccc-cccccCcceeecCCCCccccccchhCCCCCcEEEecccc
Q 001161 838 PES-LGLLSLVTELHLEGNNFERIPESIIQLSNLEWLFIRYCE 879 (1134)
Q Consensus 838 p~~-l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~ 879 (1134)
|.. +..+++|+.|+|++|+++.+|..+..+++|+.|+|++|+
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 653 355677777777777777777666666666666666655
No 83
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.80 E-value=5e-21 Score=187.39 Aligned_cols=97 Identities=23% Similarity=0.349 Sum_probs=89.4
Q ss_pred CCCCccEEEcccccccccchHHH-HHHHHhhC--CCceEecC-CCCCCCcchHHHHHHHHhcccEEEEecCCcccchhhH
Q 001161 18 PEVQYDVFLSFRGEDTRENFTSH-LYSALSRE--SIETFIDD-DLRRGDEISQSLLDAIEASSISIIVFSERYASSRWCL 93 (1134)
Q Consensus 18 ~~~~~dvFis~~~~D~r~~~~~~-l~~~l~~~--g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~ 93 (1134)
..+.|||||||+|+| ..|+.+ |+++|+++ |+++|+|+ |+.+|+.+.++|.+||++|+++|+|+|++|+.|.||+
T Consensus 2 ~~~~yDvFiSy~~~D--~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERD--AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCccc--HHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 467899999999999 589997 99999987 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-hhccCcEEEeEEee
Q 001161 94 DELLKILEC-KKEYAQIVIPACYR 116 (1134)
Q Consensus 94 ~El~~~~~~-~~~~~~~v~pvf~~ 116 (1134)
.|+..|+.+ .++.+++||||||+
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~ 103 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLE 103 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESS
T ss_pred HHHHHHHHHHHhcCCCEEEEEEec
Confidence 999998854 35566789999997
No 84
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.80 E-value=1e-20 Score=186.95 Aligned_cols=101 Identities=19% Similarity=0.290 Sum_probs=92.1
Q ss_pred CCCCCccEEEcccccccccchHHHHHHHHhhC--CCceEecC-CCCCCCcchHHHHHHHH-hcccEEEEecCCcccchhh
Q 001161 17 NPEVQYDVFLSFRGEDTRENFTSHLYSALSRE--SIETFIDD-DLRRGDEISQSLLDAIE-ASSISIIVFSERYASSRWC 92 (1134)
Q Consensus 17 ~~~~~~dvFis~~~~D~r~~~~~~l~~~l~~~--g~~~~~d~-~~~~g~~~~~~~~~~i~-~s~~~i~v~S~~y~~s~wc 92 (1134)
...+.|||||||+++| +.||.+|+++|+++ |+++|+|+ |+.+|+.|.++|.++|+ +|+++|+|+|++|+.|.||
T Consensus 12 ~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc 89 (160)
T 2js7_A 12 HMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKEC 89 (160)
T ss_dssp CCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHH
T ss_pred CCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHH
Confidence 3478999999999999 89999999999985 69999999 99999999999999999 7999999999999999999
Q ss_pred HHHHHHHHHhh-hccCcEEEeEEeeecc
Q 001161 93 LDELLKILECK-KEYAQIVIPACYRVDP 119 (1134)
Q Consensus 93 ~~El~~~~~~~-~~~~~~v~pvf~~v~p 119 (1134)
+.|+..|+++. ++.+++||||||++-+
T Consensus 90 ~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 90 DFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 99999999876 4445689999998654
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=2.4e-18 Score=189.10 Aligned_cols=177 Identities=22% Similarity=0.306 Sum_probs=145.5
Q ss_pred CCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEcc
Q 001161 703 GNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAV 782 (1134)
Q Consensus 703 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~ 782 (1134)
.+.+.++++++.++.+|..+. ++|+.|+|++|.+....+..|.++++|++|++++|.+....+..+..+++|++|+++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 357889999999999997664 689999999998776666678899999999999998876666667889999999999
Q ss_pred CCcCcccCcc-ccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccc-cccccCcceeecCCCCcccc
Q 001161 783 GTAIRELPPS-IVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPES-LGLLSLVTELHLEGNNFERI 860 (1134)
Q Consensus 783 ~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~l 860 (1134)
+|.++.+|.. +..+++|+.|++++|. +....+..+..+++|++|+|++|.++.+|.. +..+++|++|+|++|.++.+
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 9999988764 5678899999999887 6666666678888899999999988887764 67888899999988888877
Q ss_pred cc-chhCCCCCcEEEeccccCCC
Q 001161 861 PE-SIIQLSNLEWLFIRYCERLQ 882 (1134)
Q Consensus 861 p~-~l~~l~~L~~L~Ls~n~~l~ 882 (1134)
|. .+.++++|+.|+|++|++..
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSC
T ss_pred ChhHhccCCCcCEEECCCCcCCc
Confidence 75 47778888888888886543
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.79 E-value=3.2e-19 Score=196.34 Aligned_cols=196 Identities=20% Similarity=0.300 Sum_probs=123.2
Q ss_pred CCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEcc
Q 001161 703 GNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAV 782 (1134)
Q Consensus 703 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~ 782 (1134)
.+|+.|++++|.+..++ .+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 41 ~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 34444444445555444 25666777777777766544 2 246667777777777776666555566667777777777
Q ss_pred CCcCcccCcc-ccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccc-cccccCcceeecCCCCcccc
Q 001161 783 GTAIRELPPS-IVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPES-LGLLSLVTELHLEGNNFERI 860 (1134)
Q Consensus 783 ~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~l 860 (1134)
+|.++.++.. +..+++|+.|++++|. +....+..+..+++|+.|+|++|+++.++.. ++.+++|+.|+|++|+++.+
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 7777766554 4566777777777765 4544445566677777777777777766543 46677777777777777766
Q ss_pred cc-chhCCCCCcEEEeccccCCCccCCcCCCcCeEeccCCccccccc
Q 001161 861 PE-SIIQLSNLEWLFIRYCERLQSLPKLPCNLIWLDAHHCTALESLP 906 (1134)
Q Consensus 861 p~-~l~~l~~L~~L~Ls~n~~l~~lp~~~~~L~~L~l~~c~~l~~~~ 906 (1134)
|. .+..+++|+.|+|++|++....| +|+.|+++.|.....+|
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~~~~~----~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWDCTCP----GIRYLSEWINKHSGVVR 239 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCTT----TTHHHHHHHHHTGGGBB
T ss_pred CHHHHhCCcCCCEEEccCCCccccCc----HHHHHHHHHHhCCCccc
Confidence 54 35667777777777776554432 45566666555444444
No 87
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=1e-20 Score=233.34 Aligned_cols=127 Identities=16% Similarity=0.129 Sum_probs=53.8
Q ss_pred cCCCCCcEEEccCCCCCcccCCcc-CcCcccEEEecCCCCCCCcc----ccc-CCCcceeEecCcCccccCccccCCCCC
Q 001161 655 QHLNKLAILNLSGCGNLQSLPDRI-HLELLKELNLSGCSKLKRLP----EIS-SGNIETMHLDGTALEELPSSIECLSKL 728 (1134)
Q Consensus 655 ~~l~~L~~L~L~~~~~~~~lp~~~-~l~~L~~L~Ls~~~~l~~~~----~~~-~~~L~~L~L~~n~i~~lp~~~~~l~~L 728 (1134)
.++++|+.|+|++|...+ +|..+ .+++|++|+++++......+ .+. ..+|+.|.++++....+|..+..+++|
T Consensus 217 ~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L 295 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQI 295 (592)
T ss_dssp HHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGC
T ss_pred hhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCC
Confidence 344555555555544333 33222 35555555554322211100 000 144555555554444455555555555
Q ss_pred CeeeccCCcCCccc-CcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEcc
Q 001161 729 SRLDLADCKSLKSL-PSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAV 782 (1134)
Q Consensus 729 ~~L~L~~n~~~~~l-p~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~ 782 (1134)
++|+|++|.+.... +..+..+++|++|+++++-....++.....+++|++|+++
T Consensus 296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp CEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred cEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 55555555532211 1223445555555555221111222233344555555555
No 88
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.79 E-value=2.4e-20 Score=187.11 Aligned_cols=101 Identities=23% Similarity=0.358 Sum_probs=87.6
Q ss_pred CCCCCCccEEEcccccccccchHHH-HHHHHhh--CCCceEecC-CCCCCCcchHHHHHHHHhcccEEEEecCCcccchh
Q 001161 16 TNPEVQYDVFLSFRGEDTRENFTSH-LYSALSR--ESIETFIDD-DLRRGDEISQSLLDAIEASSISIIVFSERYASSRW 91 (1134)
Q Consensus 16 ~~~~~~~dvFis~~~~D~r~~~~~~-l~~~l~~--~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~w 91 (1134)
....+.|||||||+++| ..||.+ |+++|++ +|+++|+|+ |+.+|+.|.++|.+||++|+++|+|+|++|+.|.|
T Consensus 30 ~~~~~~yDvFISys~~D--~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHD--SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGG--HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCC--HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 34678999999999999 699975 9999998 899999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhh-hccCcEEEeEEeeec
Q 001161 92 CLDELLKILECK-KEYAQIVIPACYRVD 118 (1134)
Q Consensus 92 c~~El~~~~~~~-~~~~~~v~pvf~~v~ 118 (1134)
|+.|+..|+.+. ++.+++||||||+.-
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~i 135 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEPI 135 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSCC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecCC
Confidence 999999998654 455678999999743
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.79 E-value=1.4e-18 Score=191.26 Aligned_cols=210 Identities=17% Similarity=0.175 Sum_probs=163.0
Q ss_pred CCcCCCCCcEEEccCCCCCcccCCccCcCcccEEEecCCCCCCCcccccCCCcceeEecCcCccccCccccCCCCCCeee
Q 001161 653 STQHLNKLAILNLSGCGNLQSLPDRIHLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSSIECLSKLSRLD 732 (1134)
Q Consensus 653 ~~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~ 732 (1134)
....+++|+.|++++|.+. .++....+++|++|+|++| .+..++ .+..+++|++|+
T Consensus 36 ~~~~l~~L~~L~l~~~~i~-~~~~l~~l~~L~~L~l~~n----------------------~l~~~~-~l~~l~~L~~L~ 91 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIK-SVQGIQYLPNVRYLALGGN----------------------KLHDIS-ALKELTNLTYLI 91 (272)
T ss_dssp CHHHHTTCCEEECTTSCCC-CCTTGGGCTTCCEEECTTS----------------------CCCCCG-GGTTCTTCCEEE
T ss_pred ccccccceeeeeeCCCCcc-cccccccCCCCcEEECCCC----------------------CCCCch-hhcCCCCCCEEE
Confidence 4566777888888776543 3444445666666666665 444443 577888888888
Q ss_pred ccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCcc-ccCCCCCCEEEecCCCCCC
Q 001161 733 LADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPS-IVRLKSVRAIYFGRNRGLS 811 (1134)
Q Consensus 733 L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~ 811 (1134)
|++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.++.+|.. +..+++|+.|++++|. +.
T Consensus 92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~ 170 (272)
T 3rfs_A 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQ 170 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CC
T ss_pred CCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cC
Confidence 888887766666678888888888888888777777788888999999999988877765 5678899999999887 66
Q ss_pred CCcccccCCCCCCCEEeccCCCCCCCcc-ccccccCcceeecCCCCccccccchhCCCCCcEEEeccccCCCccCCcCCC
Q 001161 812 LPITFSVDGLQNLRDLNLNDCGITELPE-SLGLLSLVTELHLEGNNFERIPESIIQLSNLEWLFIRYCERLQSLPKLPCN 890 (1134)
Q Consensus 812 ~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp~~~~~ 890 (1134)
...+..+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|.+. +.+++|+.|+++.|.+.+.+|....+
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccc
Confidence 6666667889999999999999998765 4688999999999999775 34668999999999999999976665
Q ss_pred cCe
Q 001161 891 LIW 893 (1134)
Q Consensus 891 L~~ 893 (1134)
+..
T Consensus 245 ~~~ 247 (272)
T 3rfs_A 245 VAP 247 (272)
T ss_dssp BCG
T ss_pred cCC
Confidence 544
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=2.7e-18 Score=192.39 Aligned_cols=194 Identities=20% Similarity=0.303 Sum_probs=144.4
Q ss_pred CcCCCCCcEEEccCCCCCcccCCccCcCcccEEEecCCCCCCCcccccCCCcceeEecCcCccccCccccCCCCCCeeec
Q 001161 654 TQHLNKLAILNLSGCGNLQSLPDRIHLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSSIECLSKLSRLDL 733 (1134)
Q Consensus 654 ~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L 733 (1134)
...+++|++|++++|.+.. +|....+++|++|+|++ |.+..++. +..+++|++|+|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~~~~~l~~L~~L~L~~----------------------n~i~~~~~-~~~l~~L~~L~L 92 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IEGVQYLNNLIGLELKD----------------------NQITDLAP-LKNLTKITELEL 92 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CTTGGGCTTCCEEECCS----------------------SCCCCCGG-GTTCCSCCEEEC
T ss_pred HHHcCCcCEEEeeCCCccC-chhhhccCCCCEEEccC----------------------CcCCCChh-HccCCCCCEEEc
Confidence 4456667777777664433 44333455555555555 45556666 778888888888
Q ss_pred cCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCC
Q 001161 734 ADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLP 813 (1134)
Q Consensus 734 ~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~ 813 (1134)
++|.+.+ ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.++.++. +..+++|+.|++++|. +...
T Consensus 93 ~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~ 166 (308)
T 1h6u_A 93 SGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDL 166 (308)
T ss_dssp CSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCC
T ss_pred cCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCC
Confidence 8887544 33 57788888888888887655 333 7888888888888888887765 7788888888888887 4443
Q ss_pred cccccCCCCCCCEEeccCCCCCCCccccccccCcceeecCCCCccccccchhCCCCCcEEEeccccCC
Q 001161 814 ITFSVDGLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPESIIQLSNLEWLFIRYCERL 881 (1134)
Q Consensus 814 ~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l 881 (1134)
.+ +..+++|+.|+|++|.++.++. +..+++|++|+|++|+++.++ .+..+++|+.|+|++|++.
T Consensus 167 ~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 167 TP--LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp GG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEE
T ss_pred hh--hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeee
Confidence 33 7788889999999998888775 788889999999999998887 4888889999999888753
No 91
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.78 E-value=7.9e-20 Score=180.40 Aligned_cols=101 Identities=24% Similarity=0.295 Sum_probs=90.5
Q ss_pred CCccEEEccccccc---------ccchHHHHHH-HHh-hCCCceEecC-CCCCCCcchHHHHHHHHhcccEEEEecCCcc
Q 001161 20 VQYDVFLSFRGEDT---------RENFTSHLYS-ALS-RESIETFIDD-DLRRGDEISQSLLDAIEASSISIIVFSERYA 87 (1134)
Q Consensus 20 ~~~dvFis~~~~D~---------r~~~~~~l~~-~l~-~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~ 87 (1134)
+.|||||||+++|+ |+.||.|+.. +|+ +.|+++|+|+ |+.+|+.|.++|.+||++||++|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999996 5789999665 699 7999999999 9999999999999999999999999999997
Q ss_pred -cchhhHHHHHHHHHhh-hccCcEEEeEEeeeccc
Q 001161 88 -SSRWCLDELLKILECK-KEYAQIVIPACYRVDPS 120 (1134)
Q Consensus 88 -~s~wc~~El~~~~~~~-~~~~~~v~pvf~~v~p~ 120 (1134)
.|.||..|+..|+.+. ++.+.+||||+|...+.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 9999999999999986 55678999999875543
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=2e-18 Score=197.50 Aligned_cols=238 Identities=21% Similarity=0.140 Sum_probs=193.6
Q ss_pred cEEEecCCCCCCCcccccCCCcceeEecCcCccccCcc-ccCCCCCCeeeccCCcCCcccCc-ccCCCCCCcE-EeecCC
Q 001161 684 KELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSS-IECLSKLSRLDLADCKSLKSLPS-GLCKLKSLDV-LNIDGC 760 (1134)
Q Consensus 684 ~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~-~l~~l~~L~~-L~L~~~ 760 (1134)
++++.+++ .++.+|.....++++|+|++|.|+.+|.. |.++++|++|+|++|.+.+.+|. .|.++++|++ +.+++|
T Consensus 12 ~~v~C~~~-~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQES-KVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEEST-TCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCC-CCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 45555553 45667765567899999999999999974 89999999999999998887764 5788998876 555667
Q ss_pred CCCCCCCccccCCCCCcEEEccCCcCcccCcc-ccCCCCCCEEEecCCCCCCCCcccccCCCC-CCCEEeccCCCCCCCc
Q 001161 761 SNLQRLPEELGYLEALDSLHAVGTAIRELPPS-IVRLKSVRAIYFGRNRGLSLPITFSVDGLQ-NLRDLNLNDCGITELP 838 (1134)
Q Consensus 761 ~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~lp 838 (1134)
++....|..|..+++|++|++++|.+..+|.. +....++..|++.++..+.......+..+. .|+.|+|++|+|+.+|
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 77777788899999999999999999988763 456778889999775545555555566654 6899999999999999
Q ss_pred cccccccCcceeecCC-CCcccccc-chhCCCCCcEEEeccccCCCccCCcCCCcCeEeccCCcccccccCCCCCCCCcc
Q 001161 839 ESLGLLSLVTELHLEG-NNFERIPE-SIIQLSNLEWLFIRYCERLQSLPKLPCNLIWLDAHHCTALESLPGLFPSSNESY 916 (1134)
Q Consensus 839 ~~l~~l~~L~~L~Ls~-n~l~~lp~-~l~~l~~L~~L~Ls~n~~l~~lp~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 916 (1134)
......++|++|++++ |.++.+|. .+.++++|+.|+|++|++...-+..+.+|+.|.+.+|..++.+|. ...+++
T Consensus 171 ~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP~---l~~l~~ 247 (350)
T 4ay9_X 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPT---LEKLVA 247 (350)
T ss_dssp TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTTCCCCCC---TTTCCS
T ss_pred hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCCcCcCCC---chhCcC
Confidence 8887888999999985 78999995 578999999999999986544446788999999999999988884 357899
Q ss_pred ceeeeccCC
Q 001161 917 LRTLYLSDN 925 (1134)
Q Consensus 917 L~~L~Ls~n 925 (1134)
|+.++++++
T Consensus 248 L~~l~l~~~ 256 (350)
T 4ay9_X 248 LMEASLTYP 256 (350)
T ss_dssp CCEEECSCH
T ss_pred hhhCcCCCC
Confidence 999998765
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.78 E-value=5e-19 Score=198.90 Aligned_cols=218 Identities=17% Similarity=0.159 Sum_probs=107.6
Q ss_pred CCcEEEccCCCCCcc----cCCccCcCcccEEEecCCCCCCCccccc----CCCcceeEecCcCcccc-C----ccccCC
Q 001161 659 KLAILNLSGCGNLQS----LPDRIHLELLKELNLSGCSKLKRLPEIS----SGNIETMHLDGTALEEL-P----SSIECL 725 (1134)
Q Consensus 659 ~L~~L~L~~~~~~~~----lp~~~~l~~L~~L~Ls~~~~l~~~~~~~----~~~L~~L~L~~n~i~~l-p----~~~~~l 725 (1134)
.++.|.+.++..... ++....+++|++|+|++|......|... ..+|++|+|++|.+... + ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 355566655544321 1111234556666666665444443322 14455555555554421 1 123345
Q ss_pred CCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCC--C--CccccCCCCCcEEEccCCcCcccCcc----ccCCC
Q 001161 726 SKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQR--L--PEELGYLEALDSLHAVGTAIRELPPS----IVRLK 797 (1134)
Q Consensus 726 ~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~--~--p~~~~~l~~L~~L~L~~n~i~~lp~~----~~~l~ 797 (1134)
++|++|+|++|.+.+..|..+.++++|++|+|++|.+.+. + +..++.+++|++|++++|.++.++.. +..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 5566666666555554455555556666666666554331 1 12224555556666666555544331 24455
Q ss_pred CCCEEEecCCCCCCCCcccccCCC---CCCCEEeccCCCCCCCccccccccCcceeecCCCCccccccchhCCCCCcEEE
Q 001161 798 SVRAIYFGRNRGLSLPITFSVDGL---QNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPESIIQLSNLEWLF 874 (1134)
Q Consensus 798 ~L~~L~l~~n~~~~~~~~~~~~~l---~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 874 (1134)
+|+.|++++|. +....+..+..+ ++|++|+|++|+++.+|..+. ++|++|+|++|+++.+|. +..+++|+.|+
T Consensus 225 ~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~ 300 (310)
T 4glp_A 225 QPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLT 300 (310)
T ss_dssp CCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEE
T ss_pred CCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEE
Confidence 55555555555 333323223332 455555555555555555442 455555555555555543 45555555555
Q ss_pred eccccC
Q 001161 875 IRYCER 880 (1134)
Q Consensus 875 Ls~n~~ 880 (1134)
|++|++
T Consensus 301 L~~N~l 306 (310)
T 4glp_A 301 LDGNPF 306 (310)
T ss_dssp CSSTTT
T ss_pred CcCCCC
Confidence 555544
No 94
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=4.8e-18 Score=188.46 Aligned_cols=200 Identities=22% Similarity=0.208 Sum_probs=157.9
Q ss_pred CcCCCCCcEEEccCCCCCcccCCccCcCcccEEEecCCCCCCCcccccC--CCcceeEecCcCccccCccccCCCCCCee
Q 001161 654 TQHLNKLAILNLSGCGNLQSLPDRIHLELLKELNLSGCSKLKRLPEISS--GNIETMHLDGTALEELPSSIECLSKLSRL 731 (1134)
Q Consensus 654 ~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~Ls~~~~l~~~~~~~~--~~L~~L~L~~n~i~~lp~~~~~l~~L~~L 731 (1134)
++++++|+.++++++.+. .+|..+. ++|+.|+|++|......+..+. .+|+.|+|++|.|+.++.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 456667777777765543 4554332 5677777777665433333322 6777777888888877764 788899999
Q ss_pred eccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCcc-ccCCCCCCEEEecCCCCC
Q 001161 732 DLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPS-IVRLKSVRAIYFGRNRGL 810 (1134)
Q Consensus 732 ~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~ 810 (1134)
+|++|.+. .+|..+..+++|++|++++|.+.+..|..|..+++|++|++++|.++.+|.. +..+++|+.|++++|+ +
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l 160 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-L 160 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-C
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-C
Confidence 99998754 6787788899999999999988877778889999999999999999988765 4678999999999998 6
Q ss_pred CCCcccccCCCCCCCEEeccCCCCCCCccccccccCcceeecCCCCcc
Q 001161 811 SLPITFSVDGLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFE 858 (1134)
Q Consensus 811 ~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 858 (1134)
+...+..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|.+.
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 666666778899999999999999999999999999999999999886
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=195.63 Aligned_cols=196 Identities=19% Similarity=0.201 Sum_probs=132.9
Q ss_pred CCCCCeeeccCCcCCcccCccc--CCCCCCcEEeecCCCCCCCCC----ccccCCCCCcEEEccCCcCcccC-ccccCCC
Q 001161 725 LSKLSRLDLADCKSLKSLPSGL--CKLKSLDVLNIDGCSNLQRLP----EELGYLEALDSLHAVGTAIRELP-PSIVRLK 797 (1134)
Q Consensus 725 l~~L~~L~L~~n~~~~~lp~~l--~~l~~L~~L~L~~~~~~~~~p----~~~~~l~~L~~L~L~~n~i~~lp-~~~~~l~ 797 (1134)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+..++ ..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4557777777777666666666 677777777777777665544 23345777777777777777555 4566777
Q ss_pred CCCEEEecCCCCCC---CCcccccCCCCCCCEEeccCCCCCCCccc----cccccCcceeecCCCCcccc-ccchhCC--
Q 001161 798 SVRAIYFGRNRGLS---LPITFSVDGLQNLRDLNLNDCGITELPES----LGLLSLVTELHLEGNNFERI-PESIIQL-- 867 (1134)
Q Consensus 798 ~L~~L~l~~n~~~~---~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~----l~~l~~L~~L~Ls~n~l~~l-p~~l~~l-- 867 (1134)
+|+.|++++|+... ......+..+++|++|+|++|+++.++.. ++.+++|++|+|++|+++.+ |..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 77777777776221 11122335677888888888888766542 46678888888888888865 6666665
Q ss_pred -CCCcEEEeccccCCCccCC-cCCCcCeEeccCCcccccccCCCCCCCCccceeeeccCC
Q 001161 868 -SNLEWLFIRYCERLQSLPK-LPCNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDN 925 (1134)
Q Consensus 868 -~~L~~L~Ls~n~~l~~lp~-~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n 925 (1134)
++|++|+|++|++. .+|. .+++|+.|++++|.. ..++. ...+++|+.|+|++|
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~l-~~~~~---~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNRL-NRAPQ---PDELPEVDNLTLDGN 304 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCCC-CSCCC---TTSCCCCSCEECSST
T ss_pred cCcCCEEECCCCCCC-chhhhhcCCCCEEECCCCcC-CCCch---hhhCCCccEEECcCC
Confidence 58888888888776 4553 557888888888654 33332 246788888888888
No 96
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=1.4e-21 Score=241.14 Aligned_cols=392 Identities=15% Similarity=0.117 Sum_probs=202.3
Q ss_pred cccccCCCccEEEEecCCcccCcceeeccCC-------------CCcCeeEEEeecCCCCCCC-CCCC--CcccceEeeC
Q 001161 553 NVFAKMPNLRILKFYNSMDEENKCKVSHFQG-------------SEFTEVRYLHWHGYPLKSL-PSNI--HPEKLVLLEM 616 (1134)
Q Consensus 553 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~-------------~~~~~L~~L~l~~~~l~~l-p~~~--~l~~L~~L~L 616 (1134)
..+..+++|+.|++.++..... ... .+.. ..+++|++|++++|.+... +..+ .+++|++|+|
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~-~~l-~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L 137 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFAD-FNL-VPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL 137 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGG-GTC-SCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEE
T ss_pred HHHhhCCCceEEeccCCCchhh-ccc-ccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeC
Confidence 3456677888888876531100 000 0000 0126788888888765421 1111 3578888888
Q ss_pred CCC-Cccc--cchhhhccccchhhccccccCcCCCC---CCCCCcCCCCCcEEEccCCC--CC-cccCCcc-CcCcccEE
Q 001161 617 PYS-NIEQ--LFDIVQNHGKLYQIITAAFNFFSKTP---TPLSTQHLNKLAILNLSGCG--NL-QSLPDRI-HLELLKEL 686 (1134)
Q Consensus 617 ~~n-~i~~--l~~~~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~L~~~~--~~-~~lp~~~-~l~~L~~L 686 (1134)
++| .+.. ++.....+++|++|++++|. +.... .+.....+++|+.|+|++|. .. ..++... ++++|++|
T Consensus 138 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L 216 (594)
T 2p1m_B 138 SSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216 (594)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEE
T ss_pred CCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEE
Confidence 877 5554 44555678888888888776 22211 01223367788888888876 11 0111111 36888888
Q ss_pred EecCCCCCCCcccccC--CCcceeEecC-------cCccccCccccCCCCCCee-eccCCcCCcccCcccCCCCCCcEEe
Q 001161 687 NLSGCSKLKRLPEISS--GNIETMHLDG-------TALEELPSSIECLSKLSRL-DLADCKSLKSLPSGLCKLKSLDVLN 756 (1134)
Q Consensus 687 ~Ls~~~~l~~~~~~~~--~~L~~L~L~~-------n~i~~lp~~~~~l~~L~~L-~L~~n~~~~~lp~~l~~l~~L~~L~ 756 (1134)
+|++|..+..++.... ++|+.|+++. +.+..++..+.++++|+.| .+.+.. ...++..+..+++|++|+
T Consensus 217 ~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~ 295 (594)
T 2p1m_B 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLN 295 (594)
T ss_dssp ECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEE
T ss_pred ecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEE
Confidence 8888855554444433 6777777443 3344455556666666666 333322 233444344566777777
Q ss_pred ecCCCCCCC-CCccccCCCCCcEEEccCCcCc--ccCccccCCCCCCEEEecCC--------CCCCCCccccc-CCCCCC
Q 001161 757 IDGCSNLQR-LPEELGYLEALDSLHAVGTAIR--ELPPSIVRLKSVRAIYFGRN--------RGLSLPITFSV-DGLQNL 824 (1134)
Q Consensus 757 L~~~~~~~~-~p~~~~~l~~L~~L~L~~n~i~--~lp~~~~~l~~L~~L~l~~n--------~~~~~~~~~~~-~~l~~L 824 (1134)
+++|.+... ++..+..+++|++|++++| +. .++.....+++|+.|++.++ ..++......+ .++++|
T Consensus 296 L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L 374 (594)
T 2p1m_B 296 LSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKL 374 (594)
T ss_dssp CTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTC
T ss_pred ccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhH
Confidence 777663322 2223456677777777766 33 12222234666777766321 11111111111 235666
Q ss_pred CEEeccCCCCCC-Ccccc-ccccCcceeecC--C----CCccccc------cchhCCCCCcEEEeccccCCCcc-C---C
Q 001161 825 RDLNLNDCGITE-LPESL-GLLSLVTELHLE--G----NNFERIP------ESIIQLSNLEWLFIRYCERLQSL-P---K 886 (1134)
Q Consensus 825 ~~L~Ls~n~l~~-lp~~l-~~l~~L~~L~Ls--~----n~l~~lp------~~l~~l~~L~~L~Ls~n~~l~~l-p---~ 886 (1134)
+.|.++.|+++. .+..+ ..+++|+.|+|+ + |.++..| ..+..+++|+.|+|++ .+.... + .
T Consensus 375 ~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~ 453 (594)
T 2p1m_B 375 ESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT 453 (594)
T ss_dssp CEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH
T ss_pred HHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH
Confidence 666666666653 12222 245666666666 3 4454332 2245566666666655 222111 1 1
Q ss_pred cCCCcCeEeccCCcccccccCCCCCCCCccceeeeccCCCCCCccccccchH-HHHHHhHHHHHHhHHhhhh
Q 001161 887 LPCNLIWLDAHHCTALESLPGLFPSSNESYLRTLYLSDNFKLDPNDLGGIVK-GALQKIQLLATARLKEARE 957 (1134)
Q Consensus 887 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~~~~-~~~~~l~~L~~L~L~~n~~ 957 (1134)
..++|+.|++++|.........+ ...+++|+.|+|++| .+++... .....+++|+.|++++|++
T Consensus 454 ~~~~L~~L~L~~~~i~~~~~~~l-~~~~~~L~~L~L~~n------~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 454 YAKKMEMLSVAFAGDSDLGMHHV-LSGCDSLRKLEIRDC------PFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HCTTCCEEEEESCCSSHHHHHHH-HHHCTTCCEEEEESC------SCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred hchhccEeeccCCCCcHHHHHHH-HhcCCCcCEEECcCC------CCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 24566666666665321111000 013556666666666 3322221 1223456666666666644
No 97
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=6.3e-18 Score=189.45 Aligned_cols=186 Identities=22% Similarity=0.356 Sum_probs=140.7
Q ss_pred CcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccC
Q 001161 704 NIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVG 783 (1134)
Q Consensus 704 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~ 783 (1134)
+|+.|+++++.+..+| .+..+++|+.|+|++|.+... +. +..+++|++|++++|.+.+ ++ .+..+++|+.|++++
T Consensus 42 ~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTT
T ss_pred CcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCC
Confidence 4445555555666666 478889999999999876544 44 8889999999999988655 33 688889999999999
Q ss_pred CcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccccccccCcceeecCCCCccccccc
Q 001161 784 TAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPES 863 (1134)
Q Consensus 784 n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~ 863 (1134)
|.++.++. +..+++|+.|++++|. +....+ +..+++|+.|+|++|.++.++. +..+++|+.|+|++|.++.++.
T Consensus 117 n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~- 190 (308)
T 1h6u_A 117 TQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP- 190 (308)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred CCCCCchh-hcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-
Confidence 99888765 7888899999999887 444433 7788889999999998888776 8888889999999998888875
Q ss_pred hhCCCCCcEEEeccccCCCccC-CcCCCcCeEeccCCc
Q 001161 864 IIQLSNLEWLFIRYCERLQSLP-KLPCNLIWLDAHHCT 900 (1134)
Q Consensus 864 l~~l~~L~~L~Ls~n~~l~~lp-~~~~~L~~L~l~~c~ 900 (1134)
+..+++|+.|+|++|++....| ..+++|+.|++++|+
T Consensus 191 l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 191 LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence 7888888888888887654332 123455555555543
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=4.9e-18 Score=194.22 Aligned_cols=238 Identities=16% Similarity=0.176 Sum_probs=157.1
Q ss_pred EEEeecCCCCCCCCCCCCcccceEeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCC
Q 001161 590 RYLHWHGYPLKSLPSNIHPEKLVLLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCG 669 (1134)
Q Consensus 590 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~ 669 (1134)
+.++.+++.++++|..+ ++++++|+|++|+|+.++ +..|.++++|++|+|++|.
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~-------------------------~~~f~~l~~L~~L~Ls~N~ 65 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQ-------------------------KGAFSGFGDLEKIEISQND 65 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEEC-------------------------TTSSTTCTTCCEEEEECCT
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcC-------------------------HHHHcCCCCCCEEECcCCC
Confidence 45677888888998876 578888888888888774 2346677778888888877
Q ss_pred CCcccCCcc--CcCcccEEEecCCCCCCCcccccCCCcceeEecCcCccccC-ccccCCCCCCeeeccCCcCCcccCccc
Q 001161 670 NLQSLPDRI--HLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELP-SSIECLSKLSRLDLADCKSLKSLPSGL 746 (1134)
Q Consensus 670 ~~~~lp~~~--~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~L~~n~~~~~lp~~l 746 (1134)
+.+.+|... ++++|+++.+ +.+|++..++ ..+..+++|++|++++|.+....+..+
T Consensus 66 i~~~i~~~~f~~L~~l~~~l~---------------------~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~ 124 (350)
T 4ay9_X 66 VLEVIEADVFSNLPKLHEIRI---------------------EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 124 (350)
T ss_dssp TCCEECTTSBCSCTTCCEEEE---------------------EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT
T ss_pred CCCccChhHhhcchhhhhhhc---------------------ccCCcccccCchhhhhccccccccccccccccCCchhh
Confidence 776666432 4555554333 2334555564 347888888888888888766655556
Q ss_pred CCCCCCcEEeecCCCCCCCCC-ccccCC-CCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCC
Q 001161 747 CKLKSLDVLNIDGCSNLQRLP-EELGYL-EALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNL 824 (1134)
Q Consensus 747 ~~l~~L~~L~L~~~~~~~~~p-~~~~~l-~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 824 (1134)
....++..|++.++.....++ ..+..+ ..|+.|++++|.|+.+|...+...+|+.|++.+|..+.......|.++++|
T Consensus 125 ~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L 204 (350)
T 4ay9_X 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP 204 (350)
T ss_dssp CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECC
T ss_pred cccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCccc
Confidence 667778888887765555444 345554 368888999998888888777777777777775443555444556666666
Q ss_pred CEEeccCCCCCCCccccccccCcceeecCC-CCccccccchhCCCCCcEEEecc
Q 001161 825 RDLNLNDCGITELPESLGLLSLVTELHLEG-NNFERIPESIIQLSNLEWLFIRY 877 (1134)
Q Consensus 825 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~-n~l~~lp~~l~~l~~L~~L~Ls~ 877 (1134)
+.|+|++|+|+.+|.. .+.+|+.|.+.+ ++++.+| .+.++++|+.+++.+
T Consensus 205 ~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 205 VILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp SEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred chhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 6777766666666652 233444444333 3455666 356666666666654
No 99
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=1.6e-21 Score=240.68 Aligned_cols=360 Identities=16% Similarity=0.150 Sum_probs=225.3
Q ss_pred ccCCCccEEEEecCCcccCcceeeccCCC--CcCeeEEEeecCC-CCCC--CCCCC-CcccceEeeCCCCCccc-----c
Q 001161 556 AKMPNLRILKFYNSMDEENKCKVSHFQGS--EFTEVRYLHWHGY-PLKS--LPSNI-HPEKLVLLEMPYSNIEQ-----L 624 (1134)
Q Consensus 556 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~-~l~~--lp~~~-~l~~L~~L~L~~n~i~~-----l 624 (1134)
..+++|+.|+++++.... ..+..+ .+++|++|++.+| .+.. ++... .+++|++|+|++|.++. +
T Consensus 102 ~~~~~L~~L~L~~~~~~~-----~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l 176 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTD-----DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176 (594)
T ss_dssp HHCTTCCEEEEESCBCCH-----HHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG
T ss_pred HhCCCCCeEEeeCcEEcH-----HHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH
Confidence 466778888887653111 111111 2367788888777 3332 33322 36778888888887654 2
Q ss_pred chhhhccccchhhccccccCcCCCCC---CCCCcCCCCCcEEEccCCCCCcccCCcc-CcCcccEEEecCCCCC------
Q 001161 625 FDIVQNHGKLYQIITAAFNFFSKTPT---PLSTQHLNKLAILNLSGCGNLQSLPDRI-HLELLKELNLSGCSKL------ 694 (1134)
Q Consensus 625 ~~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~l~~L~~L~L~~~~~~~~lp~~~-~l~~L~~L~Ls~~~~l------ 694 (1134)
......+++|+.|+++++. ..+.. ...+..+++|++|+|++|...+.+|..+ .+++|++|++++|..-
T Consensus 177 ~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 254 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVY 254 (594)
T ss_dssp GGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHH
T ss_pred HHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhH
Confidence 3333466788888888775 11110 1112456888999998886555565555 5888888887766420
Q ss_pred CCcc-cccC-CCccee-EecCcCccccCccccCCCCCCeeeccCCcCCcc-cCcccCCCCCCcEEeecCCCCCCCCCccc
Q 001161 695 KRLP-EISS-GNIETM-HLDGTALEELPSSIECLSKLSRLDLADCKSLKS-LPSGLCKLKSLDVLNIDGCSNLQRLPEEL 770 (1134)
Q Consensus 695 ~~~~-~~~~-~~L~~L-~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~-lp~~l~~l~~L~~L~L~~~~~~~~~p~~~ 770 (1134)
..++ .+.. ++|+.| .+.......++..+..+++|++|+|++|.+... ++..+.++++|++|++++|-....++...
T Consensus 255 ~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~ 334 (594)
T 2p1m_B 255 SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA 334 (594)
T ss_dssp HHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH
T ss_pred HHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHH
Confidence 0111 1111 567777 455444456666667789999999999985433 22335688999999999882111233334
Q ss_pred cCCCCCcEEEccC---------CcCcc--cCccccCCCCCCEEEecCCCCCCCCccccc-CCCCCCCEEecc--C----C
Q 001161 771 GYLEALDSLHAVG---------TAIRE--LPPSIVRLKSVRAIYFGRNRGLSLPITFSV-DGLQNLRDLNLN--D----C 832 (1134)
Q Consensus 771 ~~l~~L~~L~L~~---------n~i~~--lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~Ls--~----n 832 (1134)
..+++|++|++.+ +.++. +......+++|+.|.+..|. ++......+ ..+++|+.|+|+ + +
T Consensus 335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~-l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ-MTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC-CCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC-cCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 4588999998843 44442 11122348899999887666 443322233 358899999999 4 5
Q ss_pred CCCCCc------cccccccCcceeecCCCCcc-ccccchhC-CCCCcEEEeccccCCCccC----CcCCCcCeEeccCCc
Q 001161 833 GITELP------ESLGLLSLVTELHLEGNNFE-RIPESIIQ-LSNLEWLFIRYCERLQSLP----KLPCNLIWLDAHHCT 900 (1134)
Q Consensus 833 ~l~~lp------~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~-l~~L~~L~Ls~n~~l~~lp----~~~~~L~~L~l~~c~ 900 (1134)
.++..| ..+..+++|+.|+|++ .++ ..+..+.. +++|+.|+|++|.+....+ ...++|+.|++++|.
T Consensus 414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp TTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred cccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 666443 2356788999999987 565 33334544 8999999999998654322 236789999999998
Q ss_pred ccccccCCCCCCCCccceeeeccCC
Q 001161 901 ALESLPGLFPSSNESYLRTLYLSDN 925 (1134)
Q Consensus 901 ~l~~~~~~~~~~~l~~L~~L~Ls~n 925 (1134)
........ ....+++|+.|++++|
T Consensus 493 ~~~~~~~~-~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 493 FGDKALLA-NASKLETMRSLWMSSC 516 (594)
T ss_dssp CCHHHHHH-TGGGGGGSSEEEEESS
T ss_pred CcHHHHHH-HHHhCCCCCEEeeeCC
Confidence 63221111 1135789999999999
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.76 E-value=9.8e-18 Score=182.12 Aligned_cols=177 Identities=21% Similarity=0.284 Sum_probs=133.2
Q ss_pred CcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccC
Q 001161 704 NIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVG 783 (1134)
Q Consensus 704 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~ 783 (1134)
+.+.++++++.++.+|..+. ++|+.|+|++|.+.+..+..+.++++|++|+|++|.+.+..+..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 34556666677777776654 5778888888877776666777788888888888877777777777788888888888
Q ss_pred CcCcccCc-cccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCcc-ccccccCcceeecCCCCccccc
Q 001161 784 TAIRELPP-SIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPE-SLGLLSLVTELHLEGNNFERIP 861 (1134)
Q Consensus 784 n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp 861 (1134)
|.++.+|. .+..+++|+.|++++|. +....+..+..+++|+.|+|++|+++.+|. .++.+++|++|+|++|+++.+|
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 88877664 35667788888888776 555555556778888888888888888766 5778888888888888888776
Q ss_pred c-chhCCCCCcEEEeccccCCCc
Q 001161 862 E-SIIQLSNLEWLFIRYCERLQS 883 (1134)
Q Consensus 862 ~-~l~~l~~L~~L~Ls~n~~l~~ 883 (1134)
. .+..+++|+.|+|++|++...
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 4 577788888888888876543
No 101
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=6.3e-20 Score=213.25 Aligned_cols=241 Identities=15% Similarity=0.138 Sum_probs=118.1
Q ss_pred CcCccccCccccCCCCCCeeeccCCcCCcc----cCcccCCCCCCcEEeecCCCC---CCCCCccc-------cCCCCCc
Q 001161 712 GTALEELPSSIECLSKLSRLDLADCKSLKS----LPSGLCKLKSLDVLNIDGCSN---LQRLPEEL-------GYLEALD 777 (1134)
Q Consensus 712 ~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~----lp~~l~~l~~L~~L~L~~~~~---~~~~p~~~-------~~l~~L~ 777 (1134)
...+..++..+..+++|++|+|++|.+... ++..+..+++|++|+|++|.+ .+.+|..+ ..+++|+
T Consensus 18 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~ 97 (386)
T 2ca6_A 18 TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 97 (386)
T ss_dssp SHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence 333444555555555555555555554443 222344555555555555422 22333332 4555555
Q ss_pred EEEccCCcCcc-----cCccccCCCCCCEEEecCCCCCCCCccc----ccCCC---------CCCCEEeccCCCCC--CC
Q 001161 778 SLHAVGTAIRE-----LPPSIVRLKSVRAIYFGRNRGLSLPITF----SVDGL---------QNLRDLNLNDCGIT--EL 837 (1134)
Q Consensus 778 ~L~L~~n~i~~-----lp~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~l---------~~L~~L~Ls~n~l~--~l 837 (1134)
+|+|++|.++. +|..+..+++|+.|+|++|. +...... .+..+ ++|++|+|++|.++ .+
T Consensus 98 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~ 176 (386)
T 2ca6_A 98 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176 (386)
T ss_dssp EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred EEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH
Confidence 55555555553 44455555555555555554 2211111 11222 55566666665554 22
Q ss_pred c---cccccccCcceeecCCCCcc------ccccchhCCCCCcEEEeccccCC----CccCC---cCCCcCeEeccCCcc
Q 001161 838 P---ESLGLLSLVTELHLEGNNFE------RIPESIIQLSNLEWLFIRYCERL----QSLPK---LPCNLIWLDAHHCTA 901 (1134)
Q Consensus 838 p---~~l~~l~~L~~L~Ls~n~l~------~lp~~l~~l~~L~~L~Ls~n~~l----~~lp~---~~~~L~~L~l~~c~~ 901 (1134)
| ..+..+++|++|+|++|+++ -+|..+..+++|+.|+|++|.+. ..+|. ..++|+.|++++|..
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence 3 34445555666666666555 12225555556666666655543 33332 234556666655543
Q ss_pred ccc----ccCCCCCCCCccceeeeccCCCCCCcccccc----chHHHH-HHhHHHHHHhHHhhhhcC
Q 001161 902 LES----LPGLFPSSNESYLRTLYLSDNFKLDPNDLGG----IVKGAL-QKIQLLATARLKEAREKI 959 (1134)
Q Consensus 902 l~~----~~~~~~~~~l~~L~~L~Ls~n~~L~~~~l~~----~~~~~~-~~l~~L~~L~L~~n~~~~ 959 (1134)
... ++..+....+++|+.|+|++| .++. .+|..+ .++++|++|++++|++++
T Consensus 257 ~~~~~~~l~~~l~~~~~~~L~~L~L~~n------~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 257 SARGAAAVVDAFSKLENIGLQTLRLQYN------EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCEEECCSS------CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred chhhHHHHHHHHhhccCCCeEEEECcCC------cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 222 111111123566677777666 4444 233344 556677777777776654
No 102
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=6.6e-18 Score=182.04 Aligned_cols=195 Identities=19% Similarity=0.202 Sum_probs=138.4
Q ss_pred CCCcEEEccCCCCCcccCCcc-CcCcccEEEecCCCCCCCcccccCCCcceeEecCcCccccCc-cccCCCCCCeeeccC
Q 001161 658 NKLAILNLSGCGNLQSLPDRI-HLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPS-SIECLSKLSRLDLAD 735 (1134)
Q Consensus 658 ~~L~~L~L~~~~~~~~lp~~~-~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~ 735 (1134)
++|++|+|++|.+.+..+..+ ++++|++|++++|.. ++.++. .+..+++|++|++++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~---------------------l~~i~~~~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT---------------------LQQLESHSFYNLSKVTHIEIRN 89 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSS---------------------CCEECTTTEESCTTCCEEEEEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCC---------------------cceeCHhHcCCCcCCcEEECCC
Confidence 377777777776655444344 566677776666543 444554 467777777777777
Q ss_pred -CcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCc---EEEccCC-cCcccCcc-ccCCCCCC-EEEecCCC
Q 001161 736 -CKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALD---SLHAVGT-AIRELPPS-IVRLKSVR-AIYFGRNR 808 (1134)
Q Consensus 736 -n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~---~L~L~~n-~i~~lp~~-~~~l~~L~-~L~l~~n~ 808 (1134)
|.+....+..|.++++|++|++++|.+.+ +|. +..+++|+ .|++++| .++.+|.. +..+++|+ .|++++|.
T Consensus 90 ~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 90 TRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp ETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred CCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence 66554444567777778888887777655 555 66777777 8888888 77777654 66778888 88888776
Q ss_pred CCCCCcccccCCCCCCCEEeccCCC-CCCCcc-ccccc-cCcceeecCCCCccccccchhCCCCCcEEEecccc
Q 001161 809 GLSLPITFSVDGLQNLRDLNLNDCG-ITELPE-SLGLL-SLVTELHLEGNNFERIPESIIQLSNLEWLFIRYCE 879 (1134)
Q Consensus 809 ~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~lp~-~l~~l-~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~ 879 (1134)
+.......+.. ++|+.|+|++|. ++.+|. .+..+ ++|+.|+|++|+++.+|.. .+++|+.|++++|.
T Consensus 168 -l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 168 -FTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp -CCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred -CcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 44333333444 788999999994 888754 57788 8999999999999998865 78899999998875
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.74 E-value=1.1e-19 Score=211.16 Aligned_cols=163 Identities=17% Similarity=0.195 Sum_probs=78.2
Q ss_pred cCccccCCCCCCeeeccCCcCCccc----CcccCCC---------CCCcEEeecCCCCC-CCCC---ccccCCCCCcEEE
Q 001161 718 LPSSIECLSKLSRLDLADCKSLKSL----PSGLCKL---------KSLDVLNIDGCSNL-QRLP---EELGYLEALDSLH 780 (1134)
Q Consensus 718 lp~~~~~l~~L~~L~L~~n~~~~~l----p~~l~~l---------~~L~~L~L~~~~~~-~~~p---~~~~~l~~L~~L~ 780 (1134)
+|..+..+++|++|+|++|.+.... +..+..+ ++|++|++++|.+. ..+| ..+..+++|++|+
T Consensus 114 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 193 (386)
T 2ca6_A 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 193 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEE
Confidence 4444555556666666665543221 1122222 55556666555544 2223 2344555555555
Q ss_pred ccCCcCc------ccCccccCCCCCCEEEecCCCCCC----CCcccccCCCCCCCEEeccCCCCCC-----Cccccc--c
Q 001161 781 AVGTAIR------ELPPSIVRLKSVRAIYFGRNRGLS----LPITFSVDGLQNLRDLNLNDCGITE-----LPESLG--L 843 (1134)
Q Consensus 781 L~~n~i~------~lp~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~~l~~L~~L~Ls~n~l~~-----lp~~l~--~ 843 (1134)
+++|.++ -+|..+..+++|+.|+|++|. ++ ...+..+..+++|+.|+|++|.++. +|..+. .
T Consensus 194 L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 272 (386)
T 2ca6_A 194 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272 (386)
T ss_dssp CCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred CcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence 5555555 122244455555555555554 22 1122234445555555555555552 234442 2
Q ss_pred ccCcceeecCCCCccc-----cccch-hCCCCCcEEEeccccCC
Q 001161 844 LSLVTELHLEGNNFER-----IPESI-IQLSNLEWLFIRYCERL 881 (1134)
Q Consensus 844 l~~L~~L~Ls~n~l~~-----lp~~l-~~l~~L~~L~Ls~n~~l 881 (1134)
+++|+.|+|++|.++. +|..+ .++++|+.|+|++|++.
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 5555555555555554 55444 33555555555555443
No 104
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=4.3e-19 Score=202.10 Aligned_cols=251 Identities=15% Similarity=0.175 Sum_probs=128.8
Q ss_pred cccEEEecCCCCCCCc-ccccCCCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcc-cCcccCCCCCCcEEeecC
Q 001161 682 LLKELNLSGCSKLKRL-PEISSGNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKS-LPSGLCKLKSLDVLNIDG 759 (1134)
Q Consensus 682 ~L~~L~Ls~~~~l~~~-~~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~-lp~~l~~l~~L~~L~L~~ 759 (1134)
.++.|+++++...... ......+++.|++++|.+...+..+..+++|++|+|++|.+... +|..+..+++|++|++++
T Consensus 48 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~ 127 (336)
T 2ast_B 48 LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 127 (336)
T ss_dssp TSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred hheeeccccccCCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcC
Confidence 3677777775432100 00011456666666666665555555566666666666654433 555555666666666666
Q ss_pred CCCCCCCCccccCCCCCcEEEccCC-cCc--ccCccccCCCCCCEEEecCCCCCCCC-cccccCCCC-CCCEEeccCC--
Q 001161 760 CSNLQRLPEELGYLEALDSLHAVGT-AIR--ELPPSIVRLKSVRAIYFGRNRGLSLP-ITFSVDGLQ-NLRDLNLNDC-- 832 (1134)
Q Consensus 760 ~~~~~~~p~~~~~l~~L~~L~L~~n-~i~--~lp~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~-~L~~L~Ls~n-- 832 (1134)
|.+.+..+..+..+++|++|++++| .++ .++..+..+++|+.|++++|..++.. .+..+..++ +|++|+|++|
T Consensus 128 ~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~ 207 (336)
T 2ast_B 128 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 207 (336)
T ss_dssp CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred cccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcc
Confidence 6555555555555666666666665 444 24444455555555555555112211 222334444 5555555555
Q ss_pred CCC--CCccccccccCcceeecCCCC-cc-ccccchhCCCCCcEEEeccccCCCccCCcCCCcCeEeccCCcccccccCC
Q 001161 833 GIT--ELPESLGLLSLVTELHLEGNN-FE-RIPESIIQLSNLEWLFIRYCERLQSLPKLPCNLIWLDAHHCTALESLPGL 908 (1134)
Q Consensus 833 ~l~--~lp~~l~~l~~L~~L~Ls~n~-l~-~lp~~l~~l~~L~~L~Ls~n~~l~~lp~~~~~L~~L~l~~c~~l~~~~~~ 908 (1134)
.++ .+|..+..+++|++|+|++|. ++ ..+..+.++++|+.|+| ++|..+.... .
T Consensus 208 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l---------------------~~~~~~~~~~-~ 265 (336)
T 2ast_B 208 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL---------------------SRCYDIIPET-L 265 (336)
T ss_dssp GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC---------------------TTCTTCCGGG-G
T ss_pred cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeC---------------------CCCCCCCHHH-H
Confidence 232 234444445555555555554 33 33334444444555544 4443211110 0
Q ss_pred CCCCCCccceeeeccCCCCCCccccccchHHHHHHh-HHHHHHhHHhhhhcCCCCCC
Q 001161 909 FPSSNESYLRTLYLSDNFKLDPNDLGGIVKGALQKI-QLLATARLKEAREKISYPSR 964 (1134)
Q Consensus 909 ~~~~~l~~L~~L~Ls~n~~L~~~~l~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~ 964 (1134)
.....+++|+.|++++| ++... +..+ +.|..|++++|++++..|..
T Consensus 266 ~~l~~~~~L~~L~l~~~--i~~~~--------~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 266 LELGEIPTLKTLQVFGI--VPDGT--------LQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp GGGGGCTTCCEEECTTS--SCTTC--------HHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred HHHhcCCCCCEEeccCc--cCHHH--------HHHHHhhCcceEEecccCccccCCc
Confidence 01135678888888888 33322 2333 34677788888888755543
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=3.4e-17 Score=196.87 Aligned_cols=182 Identities=23% Similarity=0.307 Sum_probs=104.6
Q ss_pred CCcEEEccCCCCCcccCCccCcCcccEEEecCCCCCCCcccccCCCcceeEecCcCccccCccccCCCCCCeeeccCCcC
Q 001161 659 KLAILNLSGCGNLQSLPDRIHLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSSIECLSKLSRLDLADCKS 738 (1134)
Q Consensus 659 ~L~~L~L~~~~~~~~lp~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~ 738 (1134)
+|+.|+|++|.+.+ +|..+ .++|++|+|++ |.|+.+| ..+++|+.|+|++|.+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l-~~~L~~L~Ls~----------------------N~l~~ip---~~l~~L~~L~Ls~N~l 112 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL-PPQITVLEITQ----------------------NALISLP---ELPASLEYLDACDNRL 112 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC-CTTCSEEECCS----------------------SCCSCCC---CCCTTCCEEECCSSCC
T ss_pred CccEEEeCCCCCCc-cCHhH-cCCCCEEECcC----------------------CCCcccc---cccCCCCEEEccCCCC
Confidence 66677776665544 55433 24555555555 4444555 3345566666666654
Q ss_pred CcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCccccc
Q 001161 739 LKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSV 818 (1134)
Q Consensus 739 ~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 818 (1134)
.+ +|. +.+ +|++|++++|.+.+ +|. .+++|+.|++++|.++.+|. .+++|+.|++++|. ++.... +
T Consensus 113 ~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l 178 (571)
T 3cvr_A 113 ST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--L 178 (571)
T ss_dssp SC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--C
T ss_pred CC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--h
Confidence 43 444 433 56666666665544 444 45666666666666666554 45566666666665 333222 3
Q ss_pred CCCCCCCEEeccCCCCCCCccccccccCc-------ceeecCCCCccccccchhCCCCCcEEEeccccCCCccCC
Q 001161 819 DGLQNLRDLNLNDCGITELPESLGLLSLV-------TELHLEGNNFERIPESIIQLSNLEWLFIRYCERLQSLPK 886 (1134)
Q Consensus 819 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L-------~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp~ 886 (1134)
. ++|+.|+|++|+|+.+|. +.. +| +.|+|++|+|+.+|..+..+++|+.|+|++|++.+.+|.
T Consensus 179 ~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 179 P--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp C--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred h--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 2 666666666666666666 433 55 777777777777776666677777777777766665553
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=7.7e-17 Score=175.02 Aligned_cols=177 Identities=24% Similarity=0.313 Sum_probs=152.0
Q ss_pred CcccEEEecCCCCCCCcccccCCCcceeEecCcCccccCc-cccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecC
Q 001161 681 ELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPS-SIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDG 759 (1134)
Q Consensus 681 ~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~ 759 (1134)
.+.++++++++ .+..+|.....+++.|+|++|.+..++. .+.++++|++|+|++|.+.+..+..+.++++|++|+|++
T Consensus 14 ~~~~~l~~~~~-~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGGTEEECTTC-CCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCeEEecCCC-CccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 35666777764 3556666555788888888888887766 589999999999999998888888889999999999999
Q ss_pred CCCCCCCCccccCCCCCcEEEccCCcCcccCcc-ccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCc
Q 001161 760 CSNLQRLPEELGYLEALDSLHAVGTAIRELPPS-IVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELP 838 (1134)
Q Consensus 760 ~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp 838 (1134)
|.+.+..+..+..+++|++|+|++|.++.+|.. +..+++|+.|+|++|. +....+..+..+++|+.|+|++|.++.+|
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 998887788889999999999999999988876 5789999999999997 66666667889999999999999999886
Q ss_pred c-ccccccCcceeecCCCCccc
Q 001161 839 E-SLGLLSLVTELHLEGNNFER 859 (1134)
Q Consensus 839 ~-~l~~l~~L~~L~Ls~n~l~~ 859 (1134)
. .+..+++|+.|+|++|.++.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCT
T ss_pred HHHHhCCCCCCEEEeeCCceeC
Confidence 5 68889999999999999873
No 107
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=1.4e-18 Score=197.72 Aligned_cols=243 Identities=20% Similarity=0.186 Sum_probs=169.3
Q ss_pred CcEEEccCCCCCcccCCcc-Cc--CcccEEEecCCCCCCCcccccC-CCcceeEecCcCccc--cCccccCCCCCCeeec
Q 001161 660 LAILNLSGCGNLQSLPDRI-HL--ELLKELNLSGCSKLKRLPEISS-GNIETMHLDGTALEE--LPSSIECLSKLSRLDL 733 (1134)
Q Consensus 660 L~~L~L~~~~~~~~lp~~~-~l--~~L~~L~Ls~~~~l~~~~~~~~-~~L~~L~L~~n~i~~--lp~~~~~l~~L~~L~L 733 (1134)
++.|+++++.+. |..+ .+ ++++.|++++|......+.... .+|+.|++++|.+.. +|..+..+++|++|+|
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 455666554433 1112 23 5666666666554444433333 566666666676653 6777888999999999
Q ss_pred cCCcCCcccCcccCCCCCCcEEeecCCC-CCC-CCCccccCCCCCcEEEccCC-cCcc--cCccccCCC-CCCEEEecCC
Q 001161 734 ADCKSLKSLPSGLCKLKSLDVLNIDGCS-NLQ-RLPEELGYLEALDSLHAVGT-AIRE--LPPSIVRLK-SVRAIYFGRN 807 (1134)
Q Consensus 734 ~~n~~~~~lp~~l~~l~~L~~L~L~~~~-~~~-~~p~~~~~l~~L~~L~L~~n-~i~~--lp~~~~~l~-~L~~L~l~~n 807 (1134)
++|.+....+..+..+++|++|++++|. +.+ .++..+..+++|++|++++| .++. ++..+..++ +|+.|++++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 9998777777788889999999999984 443 36777888999999999999 8884 677788888 9999999988
Q ss_pred C-CCC-CCcccccCCCCCCCEEeccCCC-CC-CCccccccccCcceeecCCCC-cc-ccccchhCCCCCcEEEeccccCC
Q 001161 808 R-GLS-LPITFSVDGLQNLRDLNLNDCG-IT-ELPESLGLLSLVTELHLEGNN-FE-RIPESIIQLSNLEWLFIRYCERL 881 (1134)
Q Consensus 808 ~-~~~-~~~~~~~~~l~~L~~L~Ls~n~-l~-~lp~~l~~l~~L~~L~Ls~n~-l~-~lp~~l~~l~~L~~L~Ls~n~~l 881 (1134)
. .++ ...+..+..+++|+.|+|++|. ++ ..+..+..+++|++|+|++|. +. .....+.++++|+.|+|++| +.
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~ 284 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP 284 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence 4 132 3334456678999999999998 65 467788889999999999995 33 11235788999999999988 22
Q ss_pred C-ccCCcCCCcCeEeccCCccccccc
Q 001161 882 Q-SLPKLPCNLIWLDAHHCTALESLP 906 (1134)
Q Consensus 882 ~-~lp~~~~~L~~L~l~~c~~l~~~~ 906 (1134)
. .+..+..+|..|++++|......+
T Consensus 285 ~~~~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 285 DGTLQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp TTCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred HHHHHHHHhhCcceEEecccCccccC
Confidence 1 122233457777777665544444
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.71 E-value=6.6e-18 Score=194.18 Aligned_cols=239 Identities=14% Similarity=0.088 Sum_probs=128.5
Q ss_pred EEEccCCCCCcccCCccCc-CcccEEEecCCCCCCCcccccCCCcceeEecCcCccccC-----ccccCCC-CCCeeecc
Q 001161 662 ILNLSGCGNLQSLPDRIHL-ELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELP-----SSIECLS-KLSRLDLA 734 (1134)
Q Consensus 662 ~L~L~~~~~~~~lp~~~~l-~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp-----~~~~~l~-~L~~L~L~ 734 (1134)
+++|+.|.+.+.+|..... ++|++|+|++|. ++.++ ..+..++ +|++|+|+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~----------------------l~~~~~~~l~~~l~~~~~~L~~L~Ls 59 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN----------------------LYSISTVELIQAFANTPASVTSLNLS 59 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSC----------------------GGGSCHHHHHHHHHTCCTTCCEEECC
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCC----------------------CChHHHHHHHHHHHhCCCceeEEECc
Confidence 3566676666666665543 337777776654 33333 2345555 56666666
Q ss_pred CCcCCcccCcccCCC-----CCCcEEeecCCCCCCCCCcc----ccCC-CCCcEEEccCCcCcccCcc-----ccC-CCC
Q 001161 735 DCKSLKSLPSGLCKL-----KSLDVLNIDGCSNLQRLPEE----LGYL-EALDSLHAVGTAIRELPPS-----IVR-LKS 798 (1134)
Q Consensus 735 ~n~~~~~lp~~l~~l-----~~L~~L~L~~~~~~~~~p~~----~~~l-~~L~~L~L~~n~i~~lp~~-----~~~-l~~ 798 (1134)
+|.+....+..+..+ ++|++|+|++|.+.+..+.. +..+ ++|++|++++|.++..+.. +.. .++
T Consensus 60 ~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 139 (362)
T 3goz_A 60 GNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139 (362)
T ss_dssp SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTT
T ss_pred CCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCc
Confidence 665544433333332 56666666666655444432 2223 5666666666666544331 222 246
Q ss_pred CCEEEecCCCCCCCCcc----cccCCCC-CCCEEeccCCCCCCCc-c----ccccc-cCcceeecCCCCccc-----ccc
Q 001161 799 VRAIYFGRNRGLSLPIT----FSVDGLQ-NLRDLNLNDCGITELP-E----SLGLL-SLVTELHLEGNNFER-----IPE 862 (1134)
Q Consensus 799 L~~L~l~~n~~~~~~~~----~~~~~l~-~L~~L~Ls~n~l~~lp-~----~l~~l-~~L~~L~Ls~n~l~~-----lp~ 862 (1134)
|+.|++++|. +..... ..+..++ +|++|+|++|+++... . .+..+ ++|++|+|++|.|+. ++.
T Consensus 140 L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~ 218 (362)
T 3goz_A 140 ITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY 218 (362)
T ss_dssp CCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred eeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence 6666666665 332111 1223333 6666666666665432 1 23333 466666666666664 555
Q ss_pred chhCC-CCCcEEEeccccCCCccC-------CcCCCcCeEeccCCcc-------cccccCCCCCCCCccceeeeccCC
Q 001161 863 SIIQL-SNLEWLFIRYCERLQSLP-------KLPCNLIWLDAHHCTA-------LESLPGLFPSSNESYLRTLYLSDN 925 (1134)
Q Consensus 863 ~l~~l-~~L~~L~Ls~n~~l~~lp-------~~~~~L~~L~l~~c~~-------l~~~~~~~~~~~l~~L~~L~Ls~n 925 (1134)
.+..+ ++|+.|+|++|++...-+ ...++|+.|++++|.. +..++..+ ..+++|+.|++++|
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~--~~l~~L~~LdL~~N 294 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF--PNIQKIILVDKNGK 294 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS--TTCCEEEEECTTSC
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHh--ccCCceEEEecCCC
Confidence 55553 466666666666544322 2345666777766641 22222222 36778999999998
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=2e-16 Score=175.54 Aligned_cols=168 Identities=25% Similarity=0.357 Sum_probs=129.4
Q ss_pred CcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccC
Q 001161 704 NIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVG 783 (1134)
Q Consensus 704 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~ 783 (1134)
+|+.|++++|.+..++. +..+++|+.|+|++|.+.+..+ +.++++|++|++++|.+.+ +| .+..+++|++|++++
T Consensus 47 ~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEH 121 (291)
T ss_dssp TCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTT
T ss_pred cccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCC
Confidence 33444444445555543 7778888888888887655433 7788888888888887654 33 478888888888888
Q ss_pred CcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccccccccCcceeecCCCCccccccc
Q 001161 784 TAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPES 863 (1134)
Q Consensus 784 n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~ 863 (1134)
|.++.+ ..+..+++|+.|++++|. +... ..+..+++|+.|+|++|.++.++. +..+++|+.|+|++|.++.+|.
T Consensus 122 n~i~~~-~~l~~l~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~- 195 (291)
T 1h6t_A 122 NGISDI-NGLVHLPQLESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA- 195 (291)
T ss_dssp SCCCCC-GGGGGCTTCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-
T ss_pred CcCCCC-hhhcCCCCCCEEEccCCc-CCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-
Confidence 888876 457788888899988887 4443 457788999999999999998876 8889999999999999998874
Q ss_pred hhCCCCCcEEEeccccCCC
Q 001161 864 IIQLSNLEWLFIRYCERLQ 882 (1134)
Q Consensus 864 l~~l~~L~~L~Ls~n~~l~ 882 (1134)
+..+++|+.|++++|++..
T Consensus 196 l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 196 LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GTTCTTCSEEEEEEEEEEC
T ss_pred hccCCCCCEEECcCCcccC
Confidence 8889999999999987644
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.69 E-value=2.5e-16 Score=189.37 Aligned_cols=193 Identities=23% Similarity=0.303 Sum_probs=126.9
Q ss_pred cchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCccCcCcccEEEecCCCCCCCcccccCCCcceeEecC
Q 001161 633 KLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRIHLELLKELNLSGCSKLKRLPEISSGNIETMHLDG 712 (1134)
Q Consensus 633 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~ 712 (1134)
+|+.|++++++ +..+| ..+ +++|++|+|++|.+. .+| ..+++|++|+|++|.... +|. ...+|+.|+|++
T Consensus 60 ~L~~L~Ls~n~-L~~lp--~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLP--DNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE-LPASLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSC-CSCCC--SCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCS
T ss_pred CccEEEeCCCC-CCccC--HhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch-hhcCCCEEECCC
Confidence 89999999876 45554 333 489999999998876 677 347888888888875433 555 334666666666
Q ss_pred cCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCcc
Q 001161 713 TALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPS 792 (1134)
Q Consensus 713 n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~ 792 (1134)
|.|+.+|. .+++|+.|+|++|.+.+ +|. .+++|++|+|++|.+.+ +|. +. ++|+.|+|++|.|+.+|.
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~- 197 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA- 197 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-
T ss_pred CcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-
Confidence 66666665 45666666666666443 443 45566666666665444 444 33 566666666666655554
Q ss_pred ccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccccccccCcceeecCCCCcc-ccccchhCC
Q 001161 793 IVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFE-RIPESIIQL 867 (1134)
Q Consensus 793 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l 867 (1134)
+.. +| ....+.|+.|+|++|.|+.+|..+..+++|+.|+|++|+++ .+|..+..+
T Consensus 198 ~~~--~L------------------~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 198 VPV--RN------------------HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC----------------------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred HHH--hh------------------hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 221 11 01123458889999999999988888999999999999987 566666554
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.68 E-value=2.3e-16 Score=165.89 Aligned_cols=178 Identities=17% Similarity=0.204 Sum_probs=125.3
Q ss_pred ceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCc
Q 001161 706 ETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTA 785 (1134)
Q Consensus 706 ~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~ 785 (1134)
+.++.+++.++.+|..+ .++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45566666777777554 3578888888887665555556778888888888877766555566778888888888888
Q ss_pred CcccCcc-ccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccc-cccccCcceeecCCCCccccccc
Q 001161 786 IRELPPS-IVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPES-LGLLSLVTELHLEGNNFERIPES 863 (1134)
Q Consensus 786 i~~lp~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~ 863 (1134)
++.+|.. +..+++|+.|++++|. +....+..+..+++|+.|+|++|.++.++.. +..+++|+.|+|++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred CCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----
Confidence 8776654 4667777777777776 5555455567777788888888877776654 677778888888887554
Q ss_pred hhCCCCCcEEEeccccCCCccCCcCCCcC
Q 001161 864 IIQLSNLEWLFIRYCERLQSLPKLPCNLI 892 (1134)
Q Consensus 864 l~~l~~L~~L~Ls~n~~l~~lp~~~~~L~ 892 (1134)
..+++|+.|+++.|++.+.+|....++.
T Consensus 162 -~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 162 -CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp -CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred -cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 3456777777887777777776554443
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.68 E-value=5.3e-18 Score=194.97 Aligned_cols=230 Identities=17% Similarity=0.122 Sum_probs=125.4
Q ss_pred CCcCCCCCcEEEccCCCCCcccC----Ccc-CcC-cccEEEecCCCCCCCcccccCCCcceeEecCcCccccCccccCC-
Q 001161 653 STQHLNKLAILNLSGCGNLQSLP----DRI-HLE-LLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSSIECL- 725 (1134)
Q Consensus 653 ~~~~l~~L~~L~L~~~~~~~~lp----~~~-~l~-~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~~~~l- 725 (1134)
.+...++|++|+|++|.+....+ ..+ +++ +|++|+|++|......+.. +...+...
T Consensus 17 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-----------------l~~~l~~~~ 79 (362)
T 3goz_A 17 FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE-----------------LVQILAAIP 79 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH-----------------HHHHHHTSC
T ss_pred HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH-----------------HHHHHhccC
Confidence 34555669999999998665544 333 466 8888888887543322111 00111111
Q ss_pred CCCCeeeccCCcCCcccCcc----cCCC-CCCcEEeecCCCCCCCCCccc----cC-CCCCcEEEccCCcCc-----ccC
Q 001161 726 SKLSRLDLADCKSLKSLPSG----LCKL-KSLDVLNIDGCSNLQRLPEEL----GY-LEALDSLHAVGTAIR-----ELP 790 (1134)
Q Consensus 726 ~~L~~L~L~~n~~~~~lp~~----l~~l-~~L~~L~L~~~~~~~~~p~~~----~~-l~~L~~L~L~~n~i~-----~lp 790 (1134)
++|++|+|++|.+....+.. +..+ ++|++|++++|.+.+..+..+ .. .++|++|+|++|.++ .++
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 55555555555544333322 2223 556666666655544433322 22 246666666666665 233
Q ss_pred ccccCCC-CCCEEEecCCCCCCCCccc----ccCCC-CCCCEEeccCCCCCC-----Ccccccc-ccCcceeecCCCCcc
Q 001161 791 PSIVRLK-SVRAIYFGRNRGLSLPITF----SVDGL-QNLRDLNLNDCGITE-----LPESLGL-LSLVTELHLEGNNFE 858 (1134)
Q Consensus 791 ~~~~~l~-~L~~L~l~~n~~~~~~~~~----~~~~l-~~L~~L~Ls~n~l~~-----lp~~l~~-l~~L~~L~Ls~n~l~ 858 (1134)
..+..++ +|+.|++++|. ++..... .+..+ ++|++|+|++|.++. ++..+.. .++|++|+|++|.++
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 3344443 66666666665 3332222 22334 467777777777665 5555555 347777777777776
Q ss_pred ccc-----cchhCCCCCcEEEeccccCCCc-------cCC---cCCCcCeEeccCCc
Q 001161 859 RIP-----ESIIQLSNLEWLFIRYCERLQS-------LPK---LPCNLIWLDAHHCT 900 (1134)
Q Consensus 859 ~lp-----~~l~~l~~L~~L~Ls~n~~l~~-------lp~---~~~~L~~L~l~~c~ 900 (1134)
..+ ..+..+++|+.|+|++|.+... ++. ..++|+.|++++|+
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 433 3345667777777777762211 111 23457777777764
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=1.3e-16 Score=194.03 Aligned_cols=169 Identities=25% Similarity=0.354 Sum_probs=115.6
Q ss_pred CCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEcc
Q 001161 703 GNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAV 782 (1134)
Q Consensus 703 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~ 782 (1134)
.+|+.|++++|.|..+| .+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+.+ +| .+..+++|+.|+|+
T Consensus 43 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp TTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECT
T ss_pred CCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEec
Confidence 45555555556666665 36677777777777776554333 6677777777777776544 23 56677777777777
Q ss_pred CCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccccccccCcceeecCCCCcccccc
Q 001161 783 GTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPE 862 (1134)
Q Consensus 783 ~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~ 862 (1134)
+|.+..++ .+..+++|+.|+|++|. +... ..+..+++|+.|+|++|.++.++. +..+++|+.|+|++|+|+.+|
T Consensus 118 ~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~- 191 (605)
T 1m9s_A 118 HNGISDIN-GLVHLPQLESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR- 191 (605)
T ss_dssp TSCCCCCG-GGGGCTTCSEEECCSSC-CCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-
T ss_pred CCCCCCCc-cccCCCccCEEECCCCc-cCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-
Confidence 77777653 46677777777777776 4433 356677777777777777777655 777777777777777777775
Q ss_pred chhCCCCCcEEEeccccCCC
Q 001161 863 SIIQLSNLEWLFIRYCERLQ 882 (1134)
Q Consensus 863 ~l~~l~~L~~L~Ls~n~~l~ 882 (1134)
.+..+++|+.|+|++|++..
T Consensus 192 ~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 192 ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp GGTTCTTCSEEECCSEEEEC
T ss_pred HHccCCCCCEEEccCCcCcC
Confidence 57777777777777777654
No 114
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.66 E-value=1.5e-15 Score=173.83 Aligned_cols=292 Identities=15% Similarity=0.113 Sum_probs=175.7
Q ss_pred ccCCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHh---hcCCH
Q 001161 185 DTFQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAE---ETGRL 261 (1134)
Q Consensus 185 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~---~~~~~ 261 (1134)
+.++..+..|+||+.++++|.+++..+ +++.|+|++|+|||||+++++++. ..+|+.. .... .....
T Consensus 5 ~~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~-----~~~~~~~-~~~~~~~~~~~~ 74 (350)
T 2qen_A 5 LRPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER-----PGILIDC-RELYAERGHITR 74 (350)
T ss_dssp CSCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS-----SEEEEEH-HHHHHTTTCBCH
T ss_pred CCCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc-----CcEEEEe-ecccccccCCCH
Confidence 445667788999999999999998642 689999999999999999998775 1555532 2221 01133
Q ss_pred HHHHHHHHHHHhc---------------CCCC---CCCccccHHHHHHhhcC-CcceEEEecCCChH--------H-HHH
Q 001161 262 GDLRQQLLSTLLN---------------DGNV---KNFPNIDLNFQSKKLTR-KKVLIVFDDVNHPR--------Q-IKI 313 (1134)
Q Consensus 262 ~~l~~~ll~~l~~---------------~~~~---~~~~~~~~~~l~~~L~~-k~~LlVLDdv~~~~--------~-l~~ 313 (1134)
..+.+.+...+.. .... ..........+.+.... ++++|||||++... + +..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 4444444433221 0000 01222233344444432 48999999997643 2 233
Q ss_pred HhcCcCCCCCCcEEEEEeCChhhhhh-----------cC-CCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHH
Q 001161 314 LVGRLDLLASGSRIIITTRDRQVLAN-----------CG-VDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKI 381 (1134)
Q Consensus 314 l~~~~~~~~~gsrIiiTTR~~~~~~~-----------~~-~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i 381 (1134)
+...... .++.++|+|++....+.. .+ ....+++.+|+.+|+.+++....-..... ...+.+.++
T Consensus 155 L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i 231 (350)
T 2qen_A 155 FAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEA 231 (350)
T ss_dssp HHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHH
T ss_pred HHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHH
Confidence 3222111 257889999987643221 11 12478999999999999998754211111 124577899
Q ss_pred HHHhcCChHHHHHHHHHhcC-CCHHHHHHHHHHHHcCCCCchhhhhhhhhcCC---CHHHHHHHHhhhcccCCCCHHHHH
Q 001161 382 IKYARGVPLALEVLGRYLYG-KRREVWENAISKWETAPPKGIQDALKISYDGL---DDKEQNVFLDIACFFIDDDRDTVT 457 (1134)
Q Consensus 382 ~~~~~GlPLal~~~g~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L---~~~~k~~fl~~a~f~~~~~~~~l~ 457 (1134)
++.++|+|+++..++..+.. .+...+.. .+.. .+...+.-.+..+ ++..+.++..+|+ .......+.
T Consensus 232 ~~~tgG~P~~l~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~ 302 (350)
T 2qen_A 232 VELLDGIPGWLVVFGVEYLRNGDFGRAMK---RTLE----VAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIR 302 (350)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCHHHHHH---HHHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHhccccHhHHHH---HHHH----HHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHH
Confidence 99999999999999876532 22222211 1100 1111111122223 7889999999998 234555555
Q ss_pred HHhhhC--CCc---hhcchHHhhccCCeeEecCCeEEE-ChhHHHHHH
Q 001161 458 KFLDDC--EFF---ATSGIEVLVDKHLITISVRNKIKM-HDLLRAMGR 499 (1134)
Q Consensus 458 ~~~~~~--~~~---~~~~i~~L~~~sLi~~~~~~~~~m-Hdlv~~~~~ 499 (1134)
..+... +.. ....++.|.+.+||... ++.|.+ |++++++.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 303 DYLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 544221 222 34668999999999887 566665 677776643
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.64 E-value=1.4e-15 Score=159.89 Aligned_cols=184 Identities=18% Similarity=0.141 Sum_probs=140.5
Q ss_pred EEEecCCCCCCCcccccCCCcceeEecCcCccccCcc-ccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCC
Q 001161 685 ELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSS-IECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNL 763 (1134)
Q Consensus 685 ~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~ 763 (1134)
.++++++ .+..+|.....+|++|++++|.++.++.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 11 ~v~c~~~-~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 11 TVECYSQ-GRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp EEECCSS-CCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEecCC-CccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence 4444442 23444544456777777777888877765 678899999999998877655556788899999999998887
Q ss_pred CCCCccccCCCCCcEEEccCCcCcccCcc-ccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccccc
Q 001161 764 QRLPEELGYLEALDSLHAVGTAIRELPPS-IVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESLG 842 (1134)
Q Consensus 764 ~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~ 842 (1134)
+..+..+..+++|++|++++|.++.++.. +..+++|+.|++++|. +....+..+..+++|+.|+|++|.+. +
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~------~ 162 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD------C 162 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC------C
T ss_pred ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee------c
Confidence 76666788899999999999999887765 5778999999999987 66655566788899999999999655 3
Q ss_pred cccCcceeecCCCCcc-ccccchhCCCCCcEEEeccccC
Q 001161 843 LLSLVTELHLEGNNFE-RIPESIIQLSNLEWLFIRYCER 880 (1134)
Q Consensus 843 ~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~~ 880 (1134)
.+++|+.|+++.|+++ .+|.+++.++. ++..|..
T Consensus 163 ~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~ 197 (208)
T 2o6s_A 163 TCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSG 197 (208)
T ss_dssp CTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTT
T ss_pred CCCCHHHHHHHHHhCCceeeccCccccC----Ccccccc
Confidence 4568899999999888 88888877665 4455543
No 116
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=1.5e-15 Score=168.48 Aligned_cols=176 Identities=23% Similarity=0.270 Sum_probs=135.3
Q ss_pred CcCCCCCcEEEccCCCCCcccCCccCcCcccEEEecCCCCCCCcccccCCCcceeEecCcCccccCccccCCCCCCeeec
Q 001161 654 TQHLNKLAILNLSGCGNLQSLPDRIHLELLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSSIECLSKLSRLDL 733 (1134)
Q Consensus 654 ~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L 733 (1134)
+..+++|+.|++++|.+.. ++....+++|++|+|++ |.++.++. +..+++|+.|++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-~~~~~~l~~L~~L~L~~----------------------n~l~~~~~-l~~l~~L~~L~l 97 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-VQGIQYLPNVTKLFLNG----------------------NKLTDIKP-LANLKNLGWLFL 97 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-CTTGGGCTTCCEEECCS----------------------SCCCCCGG-GTTCTTCCEEEC
T ss_pred hhhcCcccEEEccCCCccc-ChhHhcCCCCCEEEccC----------------------CccCCCcc-cccCCCCCEEEC
Confidence 4556667777776654432 33333455555555554 55566666 788888999999
Q ss_pred cCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCC
Q 001161 734 ADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLP 813 (1134)
Q Consensus 734 ~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~ 813 (1134)
++|.+.. +|. +..+++|++|++++|.+.+. ..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|. +...
T Consensus 98 ~~n~l~~-~~~-l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~ 171 (291)
T 1h6t_A 98 DENKVKD-LSS-LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDI 171 (291)
T ss_dssp CSSCCCC-GGG-GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCC
T ss_pred CCCcCCC-Chh-hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccc
Confidence 9888654 443 88889999999999887653 4678889999999999999987 578889999999999997 5554
Q ss_pred cccccCCCCCCCEEeccCCCCCCCccccccccCcceeecCCCCcccccc
Q 001161 814 ITFSVDGLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPE 862 (1134)
Q Consensus 814 ~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~ 862 (1134)
.+ +..+++|+.|+|++|.++.++. +..+++|+.|+|++|+++..|.
T Consensus 172 ~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 172 VP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCCE
T ss_pred hh--hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCcc
Confidence 44 8889999999999999999875 8899999999999999987663
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=4.2e-16 Score=170.12 Aligned_cols=169 Identities=20% Similarity=0.277 Sum_probs=133.8
Q ss_pred CCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEcc
Q 001161 703 GNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAV 782 (1134)
Q Consensus 703 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~ 782 (1134)
.++..++++++.++.++ .+..+++|+.|++++|.+. .+| .+..+++|++|++++|.+.+..+ +..+++|+.|+++
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 34566667777777776 5778888999999888754 455 57888899999998887665444 8888999999999
Q ss_pred CCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccccccccCcceeecCCCCcccccc
Q 001161 783 GTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPE 862 (1134)
Q Consensus 783 ~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~ 862 (1134)
+|.++.+|.... ++|+.|++++|. ++.. ..+..+++|+.|+|++|+++.++ .+..+++|+.|+|++|+++.+ .
T Consensus 94 ~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~ 166 (263)
T 1xeu_A 94 RNRLKNLNGIPS--ACLSRLFLDNNE-LRDT--DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-G 166 (263)
T ss_dssp SSCCSCCTTCCC--SSCCEEECCSSC-CSBS--GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-T
T ss_pred CCccCCcCcccc--CcccEEEccCCc-cCCC--hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-H
Confidence 999888776443 888999999887 4443 24778889999999999998886 688889999999999999888 5
Q ss_pred chhCCCCCcEEEeccccCCCc
Q 001161 863 SIIQLSNLEWLFIRYCERLQS 883 (1134)
Q Consensus 863 ~l~~l~~L~~L~Ls~n~~l~~ 883 (1134)
.+..+++|+.|++++|++...
T Consensus 167 ~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEECC
T ss_pred HhccCCCCCEEeCCCCcccCC
Confidence 788889999999998876543
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=4e-16 Score=162.50 Aligned_cols=152 Identities=17% Similarity=0.234 Sum_probs=97.7
Q ss_pred cCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcc-cCccccCCCCCCE
Q 001161 723 ECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRE-LPPSIVRLKSVRA 801 (1134)
Q Consensus 723 ~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~-lp~~~~~l~~L~~ 801 (1134)
..+++|+.|++++|.+. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.++. .+..+..+++|+.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44555666666665543 344 3555666666666666321 22345566666666666666663 4555666666666
Q ss_pred EEecCCCCCCCCcccccCCCCCCCEEeccCCC-CCCCccccccccCcceeecCCCCccccccchhCCCCCcEEEeccccC
Q 001161 802 IYFGRNRGLSLPITFSVDGLQNLRDLNLNDCG-ITELPESLGLLSLVTELHLEGNNFERIPESIIQLSNLEWLFIRYCER 880 (1134)
Q Consensus 802 L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~ 880 (1134)
|++++|. +....+..+..+++|++|+|++|. ++.+| .+..+++|+.|++++|.++.++ .+..+++|+.|++++|++
T Consensus 117 L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred EEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 6666665 444444556677777777777776 77776 5777888888888888888777 677888888888888775
Q ss_pred C
Q 001161 881 L 881 (1134)
Q Consensus 881 l 881 (1134)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 3
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.63 E-value=1.2e-15 Score=175.08 Aligned_cols=172 Identities=17% Similarity=0.208 Sum_probs=106.5
Q ss_pred ceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccC-CCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCC
Q 001161 706 ETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLC-KLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGT 784 (1134)
Q Consensus 706 ~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~-~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n 784 (1134)
+.++++++.++.+|..+. +.++.|+|++|.+.+..+..+. ++++|++|+|++|.+.+..+..|..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 345555566666665443 3466666666665555455454 6666666666666666555566666667777777777
Q ss_pred cCcccCc-cccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCcccc----ccccCcceeecCCCCccc
Q 001161 785 AIRELPP-SIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESL----GLLSLVTELHLEGNNFER 859 (1134)
Q Consensus 785 ~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l----~~l~~L~~L~Ls~n~l~~ 859 (1134)
.++.++. .+..+++|+.|+|++|. +....+..|.++++|+.|+|++|.++.+|..+ ..+++|+.|+|++|+|+.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 6666554 35566666666666665 44444555666777777777777777776644 457777777777777776
Q ss_pred cc-cchhCCCC--CcEEEeccccC
Q 001161 860 IP-ESIIQLSN--LEWLFIRYCER 880 (1134)
Q Consensus 860 lp-~~l~~l~~--L~~L~Ls~n~~ 880 (1134)
+| ..+..++. |+.|+|++|++
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCE
T ss_pred cCHHHhhhccHhhcceEEecCCCc
Confidence 66 34555555 35566666553
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=4.2e-15 Score=157.56 Aligned_cols=150 Identities=22% Similarity=0.348 Sum_probs=103.7
Q ss_pred ceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCc
Q 001161 706 ETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTA 785 (1134)
Q Consensus 706 ~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~ 785 (1134)
+.++++++.++.+|..+. ++|+.|+|++|.+.+..+..|..+++|++|+|++|.+.+..|..|..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456666777777777554 678888888887766666677788888888888888777777778888888888888888
Q ss_pred CcccCcc-ccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCcc-ccccccCcceeecCCCCcc
Q 001161 786 IRELPPS-IVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPE-SLGLLSLVTELHLEGNNFE 858 (1134)
Q Consensus 786 i~~lp~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~ 858 (1134)
++.+|.. +..+++|+.|+|++|. +....+..+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 8877765 3556666666666665 454445556666666666666666665544 3555666666666666554
No 121
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=1.3e-15 Score=185.19 Aligned_cols=187 Identities=21% Similarity=0.237 Sum_probs=155.9
Q ss_pred CcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccC
Q 001161 704 NIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVG 783 (1134)
Q Consensus 704 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~ 783 (1134)
.+..+.+..+.+..+.. +..+++|+.|++++|.+. .+| .+..+++|+.|+|++|.+.+..| +..+++|+.|+|++
T Consensus 22 ~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 34444555555555433 577899999999999854 455 48899999999999998876554 88999999999999
Q ss_pred CcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccccccccCcceeecCCCCccccccc
Q 001161 784 TAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPES 863 (1134)
Q Consensus 784 n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~ 863 (1134)
|.+..+| .+..+++|+.|+|++|. +... ..+..+++|+.|+|++|.++.+ ..+..+++|+.|+|++|.|+.++.
T Consensus 97 N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 97 NKIKDLS-SLKDLKKLKSLSLEHNG-ISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp SCCCCCT-TSTTCTTCCEEECTTSC-CCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred CCCCCCh-hhccCCCCCEEEecCCC-CCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-
Confidence 9999876 68899999999999998 5543 3578899999999999999998 678999999999999999998876
Q ss_pred hhCCCCCcEEEeccccCCCccCC--cCCCcCeEeccCCccc
Q 001161 864 IIQLSNLEWLFIRYCERLQSLPK--LPCNLIWLDAHHCTAL 902 (1134)
Q Consensus 864 l~~l~~L~~L~Ls~n~~l~~lp~--~~~~L~~L~l~~c~~l 902 (1134)
+..+++|+.|+|++|++.. +|. .+++|+.|++++|+..
T Consensus 171 l~~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEECCSEEEE
T ss_pred hccCCCCCEEECcCCCCCC-ChHHccCCCCCEEEccCCcCc
Confidence 9999999999999998765 453 3578999999998654
No 122
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.61 E-value=4e-15 Score=170.64 Aligned_cols=290 Identities=13% Similarity=0.126 Sum_probs=169.6
Q ss_pred ccCCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHh--hcCCHH
Q 001161 185 DTFQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAE--ETGRLG 262 (1134)
Q Consensus 185 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~ 262 (1134)
+.++..++.||||+.+++.|.+ +.. +++.|+|++|+|||||+++++++.... .+|+.. .... ......
T Consensus 6 ~~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~ 75 (357)
T 2fna_A 6 TSPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDL-RKFEERNYISYK 75 (357)
T ss_dssp SSCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEG-GGGTTCSCCCHH
T ss_pred CCCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEc-hhhccccCCCHH
Confidence 4455567889999999999999 753 689999999999999999999876432 455532 2210 011222
Q ss_pred HHHHHHHHHHh-------------cCCC-----C-CCC------ccccHHHHHHhhcC---CcceEEEecCCChH-----
Q 001161 263 DLRQQLLSTLL-------------NDGN-----V-KNF------PNIDLNFQSKKLTR---KKVLIVFDDVNHPR----- 309 (1134)
Q Consensus 263 ~l~~~ll~~l~-------------~~~~-----~-~~~------~~~~~~~l~~~L~~---k~~LlVLDdv~~~~----- 309 (1134)
.+...+...+. .... . ... .......+.+.+.. ++++|||||++...
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCch
Confidence 22222222211 1000 0 000 01122333333322 48999999996642
Q ss_pred H-HHHHhcCcCCCCCCcEEEEEeCChhhhhh-----------cCC-CeEEEecCCCHHhHHHHHHHhhcC-CCCCCccHH
Q 001161 310 Q-IKILVGRLDLLASGSRIIITTRDRQVLAN-----------CGV-DEVYQMKELVHDDALRLFSRHAFE-GDHPHESHT 375 (1134)
Q Consensus 310 ~-l~~l~~~~~~~~~gsrIiiTTR~~~~~~~-----------~~~-~~~~~l~~L~~~ea~~Lf~~~af~-~~~~~~~~~ 375 (1134)
+ +..+..... ..++.++|+|+|....+.. .+. ...+++.+|+.+|+.+++...+.. +..+. .
T Consensus 156 ~~~~~l~~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~-- 231 (357)
T 2fna_A 156 NLLPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-D-- 231 (357)
T ss_dssp CCHHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-C--
T ss_pred hHHHHHHHHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-c--
Confidence 2 222221111 1246889999998653221 112 357899999999999999875421 11221 1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhcC-CCHHHHHHH-HHHHHcCCCCchhhhhh-hhh--cCCCHHHHHHHHhhhcccCC
Q 001161 376 ELACKIIKYARGVPLALEVLGRYLYG-KRREVWENA-ISKWETAPPKGIQDALK-ISY--DGLDDKEQNVFLDIACFFID 450 (1134)
Q Consensus 376 ~~~~~i~~~~~GlPLal~~~g~~L~~-~~~~~w~~~-l~~l~~~~~~~i~~~l~-~sy--~~L~~~~k~~fl~~a~f~~~ 450 (1134)
..++++.++|+|+++..++..+.. .+...|... .+... ..+...+. ..+ ..|++..+.++..+|+ . .
T Consensus 232 --~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~ 303 (357)
T 2fna_A 232 --YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGREIARKRYLNIMRTLSK-C-G 303 (357)
T ss_dssp --HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B
T ss_pred --HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C
Confidence 178999999999999999887642 233333221 11110 01111111 111 1688999999999998 3 2
Q ss_pred CCHHHHHHHhh-hCC--C---chhcchHHhhccCCeeEecCCeEE-EChhHHHHH
Q 001161 451 DDRDTVTKFLD-DCE--F---FATSGIEVLVDKHLITISVRNKIK-MHDLLRAMG 498 (1134)
Q Consensus 451 ~~~~~l~~~~~-~~~--~---~~~~~i~~L~~~sLi~~~~~~~~~-mHdlv~~~~ 498 (1134)
....+...+. ..| . .....++.|.+.+||... ++.|. .|++++++.
T Consensus 304 -~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~-~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 -KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE-GEKYCPSEPLISLAF 356 (357)
T ss_dssp -CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES-SSCEEESSHHHHHHT
T ss_pred -CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEec-CCEEEecCHHHHHhh
Confidence 5555554321 112 1 235678999999999886 45666 578887753
No 123
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=4.5e-15 Score=154.50 Aligned_cols=150 Identities=17% Similarity=0.231 Sum_probs=115.7
Q ss_pred CCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEcc
Q 001161 703 GNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAV 782 (1134)
Q Consensus 703 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~ 782 (1134)
.+|+.|++++|.+..+| .+..+++|++|++++|.+ ..+ ..+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~-~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA-TNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCC-SCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCC-Ccc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 45666666667777777 578888888888888843 333 357788888888888888877777788888888888888
Q ss_pred CCcCcc-cCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccccccccCcceeecCCCCcc
Q 001161 783 GTAIRE-LPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFE 858 (1134)
Q Consensus 783 ~n~i~~-lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 858 (1134)
+|.++. .|..+..+++|+.|++++|..+... + .+..+++|+.|++++|.++.++ .+..+++|+.|++++|+|.
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 888884 5667788888888888888633333 2 5778899999999999999887 7888999999999999875
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=1.4e-14 Score=154.52 Aligned_cols=153 Identities=21% Similarity=0.177 Sum_probs=96.2
Q ss_pred cceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCC
Q 001161 705 IETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGT 784 (1134)
Q Consensus 705 L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n 784 (1134)
.+.++.+++.+..+|..+. ++|+.|+|++|.+.+..|..|.++++|++|+|++|.+....+..+..+++|+.|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4456666666666665443 55556666655555544555555555555555555543333333444444444444444
Q ss_pred cCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccccccccCcceeecCCCCcccccc-c
Q 001161 785 AIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPE-S 863 (1134)
Q Consensus 785 ~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~ 863 (1134)
.++. ..+..+..+++|+.|+|++|+++.+|..+..+++|+.|+|++|+|+.+|. .
T Consensus 99 ~l~~------------------------l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 99 QLTV------------------------LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp CCCC------------------------CCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred cCCc------------------------cChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHH
Confidence 4443 33344566777777777788888888888888888888888888887774 4
Q ss_pred hhCCCCCcEEEeccccCCCc
Q 001161 864 IIQLSNLEWLFIRYCERLQS 883 (1134)
Q Consensus 864 l~~l~~L~~L~Ls~n~~l~~ 883 (1134)
+..+++|+.|+|++|++...
T Consensus 155 ~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTCTTCCEEECTTSCBCTT
T ss_pred HhCCCCCCEEEeeCCCccCC
Confidence 77788888888888876544
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=154.36 Aligned_cols=149 Identities=19% Similarity=0.234 Sum_probs=75.6
Q ss_pred eeEecCcCccccCccccCCCCCCeeeccCCcCCcccC-cccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCc
Q 001161 707 TMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLP-SGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTA 785 (1134)
Q Consensus 707 ~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~ 785 (1134)
.+++++|.++.+|..+. +.++.|+|++|.+.+..| ..|.++++|++|+|++|.+.+..+..|..+++|++|+|++|.
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 45555555555655442 334566666665544433 234555556666665555554444455555555555555555
Q ss_pred CcccCcc-ccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCC-ccccccccCcceeecCCCCcc
Q 001161 786 IRELPPS-IVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITEL-PESLGLLSLVTELHLEGNNFE 858 (1134)
Q Consensus 786 i~~lp~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~ 858 (1134)
++.++.. +..+++|+.|+|++|. +....+..+.++++|+.|+|++|+++.+ |..+..+++|+.|+|++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 5544432 3444444444444444 3333333444455555555555555544 344455555555555555444
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=3.4e-17 Score=198.12 Aligned_cols=178 Identities=17% Similarity=0.151 Sum_probs=117.8
Q ss_pred CCcceeEecCcCccccCccccCCCCCCeeeccCCc-------------CCcccCcccCCCCCCcEEe-ecCCCCCCCCCc
Q 001161 703 GNIETMHLDGTALEELPSSIECLSKLSRLDLADCK-------------SLKSLPSGLCKLKSLDVLN-IDGCSNLQRLPE 768 (1134)
Q Consensus 703 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~-------------~~~~lp~~l~~l~~L~~L~-L~~~~~~~~~p~ 768 (1134)
++|+.|+|++|.++.+|..+++|++|+.|++++|. ..+..|..++++++|+.|+ ++.|.+. .++.
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-~L~~ 427 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-DLRS 427 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-HHHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-hhhh
Confidence 46777788888888899999999999999987764 3445555666677777776 4433211 0000
Q ss_pred ------cccC--CCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccc
Q 001161 769 ------ELGY--LEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPES 840 (1134)
Q Consensus 769 ------~~~~--l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~ 840 (1134)
.+.. ...|+.|+|++|.++.+|. +..+++|+.|+|++|. ++ ..|..+.++++|+.|+|++|.++.+| .
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~ 503 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LR-ALPPALAALRCLEVLQASDNALENVD-G 503 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CC-CCCGGGGGCTTCCEEECCSSCCCCCG-G
T ss_pred hhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccc-cc-ccchhhhcCCCCCEEECCCCCCCCCc-c
Confidence 0000 1246777777777777765 6777777777777776 33 33446667777777777777777776 6
Q ss_pred cccccCcceeecCCCCcccc--ccchhCCCCCcEEEeccccCCCccC
Q 001161 841 LGLLSLVTELHLEGNNFERI--PESIIQLSNLEWLFIRYCERLQSLP 885 (1134)
Q Consensus 841 l~~l~~L~~L~Ls~n~l~~l--p~~l~~l~~L~~L~Ls~n~~l~~lp 885 (1134)
++.+++|+.|+|++|+|+.+ |..+..+++|+.|+|++|++.+..|
T Consensus 504 l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 77777777777777777766 6677777777777777776655433
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.58 E-value=8.8e-15 Score=167.85 Aligned_cols=173 Identities=19% Similarity=0.188 Sum_probs=142.2
Q ss_pred cEEEecCCCCCCCcccccCCCcceeEecCcCccccCcc-cc-CCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCC
Q 001161 684 KELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSS-IE-CLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCS 761 (1134)
Q Consensus 684 ~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~-~~-~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~ 761 (1134)
+.++++++ .+..+|......++.|+|++|.|+.++.. +. .+++|+.|+|++|.+....+..|.++++|++|+|++|.
T Consensus 21 ~~l~c~~~-~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSS-CCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCC-CcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 56677664 45566766667788888888999988765 55 89999999999999887777789999999999999999
Q ss_pred CCCCCCccccCCCCCcEEEccCCcCccc-CccccCCCCCCEEEecCCCCCCCCccccc---CCCCCCCEEeccCCCCCCC
Q 001161 762 NLQRLPEELGYLEALDSLHAVGTAIREL-PPSIVRLKSVRAIYFGRNRGLSLPITFSV---DGLQNLRDLNLNDCGITEL 837 (1134)
Q Consensus 762 ~~~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~l 837 (1134)
+....+..|..+++|+.|+|++|.|+.+ |..+..+++|+.|+|++|. +.......+ ..+++|+.|+|++|+|+.+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 8777777889999999999999999977 4578889999999999998 555444444 5799999999999999998
Q ss_pred cc-ccccccC--cceeecCCCCcc
Q 001161 838 PE-SLGLLSL--VTELHLEGNNFE 858 (1134)
Q Consensus 838 p~-~l~~l~~--L~~L~Ls~n~l~ 858 (1134)
|. .+..++. |+.|+|++|.+.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 74 5677776 489999999987
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=1.8e-17 Score=200.61 Aligned_cols=213 Identities=16% Similarity=0.179 Sum_probs=136.0
Q ss_pred CcccceEeeCCCCCccccchhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCcc-CcCcccE
Q 001161 607 HPEKLVLLEMPYSNIEQLFDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRI-HLELLKE 685 (1134)
Q Consensus 607 ~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~-~l~~L~~ 685 (1134)
..++|+.|+|++|.++.+|+.+.++++|+.|+++++..+...+ ..+..++..+..|..+ ++++|+.
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~-------------~ll~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII-------------LLMRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------------HHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHH-------------HHHHhcccccCCHHHHHHHHhccc
Confidence 4678999999999999999999999999999986553211110 0011122333344433 3555555
Q ss_pred EE-ecCCCCCCCcccccCCCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCC
Q 001161 686 LN-LSGCSKLKRLPEISSGNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQ 764 (1134)
Q Consensus 686 L~-Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 764 (1134)
|+ ++.|. + .+|..+.+.+|.+..+|. ..|+.|+|++|.+.+
T Consensus 414 L~~l~~n~-~--------~~L~~l~l~~n~i~~l~~-----------------------------~~L~~L~Ls~n~l~~ 455 (567)
T 1dce_A 414 VDPMRAAY-L--------DDLRSKFLLENSVLKMEY-----------------------------ADVRVLHLAHKDLTV 455 (567)
T ss_dssp HCGGGHHH-H--------HHHHHHHHHHHHHHHHHH-----------------------------TTCSEEECTTSCCSS
T ss_pred Ccchhhcc-c--------chhhhhhhhcccccccCc-----------------------------cCceEEEecCCCCCC
Confidence 55 33211 0 122333333333333322 135556666655443
Q ss_pred CCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCC--ccccc
Q 001161 765 RLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITEL--PESLG 842 (1134)
Q Consensus 765 ~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l--p~~l~ 842 (1134)
+|. ++.+++|+.|+|++|.++.+|..++.+++|+.|+|++|. ++.. + .+..+++|+.|+|++|.++.+ |..++
T Consensus 456 -lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~ 530 (567)
T 1dce_A 456 -LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLV 530 (567)
T ss_dssp -CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGG
T ss_pred -CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCC-c-ccCCCCCCcEEECCCCCCCCCCCcHHHh
Confidence 444 666666666677667677677677777777777777776 4432 3 577788888888888888877 78888
Q ss_pred cccCcceeecCCCCccccccch----hCCCCCcEEEe
Q 001161 843 LLSLVTELHLEGNNFERIPESI----IQLSNLEWLFI 875 (1134)
Q Consensus 843 ~l~~L~~L~Ls~n~l~~lp~~l----~~l~~L~~L~L 875 (1134)
.+++|+.|+|++|+++.+|+.+ ..+++|+.|++
T Consensus 531 ~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 531 SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8999999999999998777543 34889998864
No 129
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.56 E-value=3.7e-14 Score=166.11 Aligned_cols=284 Identities=12% Similarity=0.051 Sum_probs=169.5
Q ss_pred ccCCccccchhHHHHHHhh-cc--CC--CCeeEEEE--EecCCChHHHHHHHHHHHHhcc-----CCc-eeeeeechhHh
Q 001161 190 ENEDLVGVRLPMKEIESLL-RT--GS--TNVYKLGI--WGIGGIGKTTIAGAIFSKISRH-----FAG-SFFARNVREAE 256 (1134)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~L-~~--~~--~~~~vv~I--~G~gGiGKTtLA~~~~~~~~~~-----f~~-~~~~~~~~~~~ 256 (1134)
.+..++||+.+++++.+++ .. .+ ...+.+.| +|++|+||||||+++++..... +.. .+|+.. .
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 95 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA----F 95 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG----G
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC----C
Confidence 4478999999999999988 42 11 23355666 9999999999999999877653 222 344422 2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC-CCCccccHHHHHHhhc--CCcceEEEecCCCh--------HHHHHHhcCcCCC---C
Q 001161 257 ETGRLGDLRQQLLSTLLNDGNV-KNFPNIDLNFQSKKLT--RKKVLIVFDDVNHP--------RQIKILVGRLDLL---A 322 (1134)
Q Consensus 257 ~~~~~~~l~~~ll~~l~~~~~~-~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~--------~~l~~l~~~~~~~---~ 322 (1134)
.......+..+++.++...... ..+.......+.+.+. +++++|||||++.. +.+..+...+... +
T Consensus 96 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~ 175 (412)
T 1w5s_A 96 NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRD 175 (412)
T ss_dssp GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTT
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCC
Confidence 3346667788888777443221 1222334455555554 67999999999764 3333333222111 2
Q ss_pred --CCcEEEEEeCChhhhhhc---------CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhc-----
Q 001161 323 --SGSRIIITTRDRQVLANC---------GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYAR----- 386 (1134)
Q Consensus 323 --~gsrIiiTTR~~~~~~~~---------~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~----- 386 (1134)
....||+||+...+.... .....+++++++.+++.++|..++........-..+.+..+++.++
T Consensus 176 ~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 176 GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGG 255 (412)
T ss_dssp SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTS
T ss_pred CCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccC
Confidence 344588888765532111 1123489999999999999976542111111122567788999999
Q ss_pred -CChHHHHHHHHHh------cCC---CHHHHHHHHHHHHcCCCCchhhhhhhhhcCCCHHHHHHHHhhhcccC----CCC
Q 001161 387 -GVPLALEVLGRYL------YGK---RREVWENAISKWETAPPKGIQDALKISYDGLDDKEQNVFLDIACFFI----DDD 452 (1134)
Q Consensus 387 -GlPLal~~~g~~L------~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~----~~~ 452 (1134)
|+|..+..+.... .+. +.+.+..++..... ...+.-+++.|++.++.++..+|.++. ...
T Consensus 256 ~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~ 329 (412)
T 1w5s_A 256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWIN 329 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBC
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCcc
Confidence 9997665554321 111 23444444433210 234556778999999999999997652 122
Q ss_pred HHHHHH----Hh-hhCCCc------hhcchHHhhccCCeeEe
Q 001161 453 RDTVTK----FL-DDCEFF------ATSGIEVLVDKHLITIS 483 (1134)
Q Consensus 453 ~~~l~~----~~-~~~~~~------~~~~i~~L~~~sLi~~~ 483 (1134)
...+.. +. ...+.. ....++.|.+.+||...
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 330 AGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 322221 22 222221 24568899999999875
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=6.9e-16 Score=192.67 Aligned_cols=153 Identities=19% Similarity=0.249 Sum_probs=115.1
Q ss_pred ccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCC
Q 001161 741 SLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDG 820 (1134)
Q Consensus 741 ~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 820 (1134)
..|..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.|+.+|..+..+++|+.|+|++|. ++ ..+..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CC-ccChhhcC
Confidence 55677889999999999998876 67777779999999999999999999999999999999999998 55 44677889
Q ss_pred CCCCCEEeccCCCCCCCccccccccCcceeecCCCCcc-ccccchhCCCC-CcEEEeccccCCCccCCcCCCcCeEeccC
Q 001161 821 LQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFE-RIPESIIQLSN-LEWLFIRYCERLQSLPKLPCNLIWLDAHH 898 (1134)
Q Consensus 821 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~-L~~L~Ls~n~~l~~lp~~~~~L~~L~l~~ 898 (1134)
+++|++|+|++|.|+.+|..++.+++|+.|+|++|.|+ .+|..+..+.. +..|+|++|.+.+.+|. .|..|++++
T Consensus 292 l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~---~l~~l~l~~ 368 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH---ERRFIEINT 368 (727)
T ss_dssp GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---C--------
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc---ccceeEeec
Confidence 99999999999999999999999999999999999998 55555544322 23478889888776654 677778877
Q ss_pred C
Q 001161 899 C 899 (1134)
Q Consensus 899 c 899 (1134)
|
T Consensus 369 n 369 (727)
T 4b8c_D 369 D 369 (727)
T ss_dssp -
T ss_pred c
Confidence 6
No 131
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.55 E-value=6.6e-14 Score=149.36 Aligned_cols=152 Identities=18% Similarity=0.159 Sum_probs=117.3
Q ss_pred cccEEEecCCCCCCCcccccCCCcceeEecCcCcccc-CccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCC
Q 001161 682 LLKELNLSGCSKLKRLPEISSGNIETMHLDGTALEEL-PSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGC 760 (1134)
Q Consensus 682 ~L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~ 760 (1134)
+.+.++.+++ .+..+|.....+|+.|+|++|.|..+ |..+..+++|+.|+|++|.+....+..|.++++|++|+|++|
T Consensus 20 s~~~v~c~~~-~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 20 SGTTVDCRSK-RHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp ETTEEECTTS-CCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCEeEccCC-CcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3455666553 45566665567888888888888877 456899999999999999976555566789999999999999
Q ss_pred CCCCCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCC
Q 001161 761 SNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGIT 835 (1134)
Q Consensus 761 ~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 835 (1134)
.+.+..+..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|. +....+..+..+++|+.|+|++|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 988777777899999999999999999998888888888888887776 44444444555666666666666554
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.54 E-value=4.7e-14 Score=149.44 Aligned_cols=151 Identities=17% Similarity=0.191 Sum_probs=127.9
Q ss_pred cEEEecCCCCCCCcccccCCCcceeEecCcCccccCc--cccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCC
Q 001161 684 KELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPS--SIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCS 761 (1134)
Q Consensus 684 ~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~--~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~ 761 (1134)
+.+++++|. ++.+|......++.|+|++|.|+.++. .+..+++|+.|+|++|.+.+..+..|.++++|++|+|++|.
T Consensus 14 ~~l~~s~n~-l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQK-LNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCC-cccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 466666643 445666555677888888888888743 38899999999999999887777789999999999999999
Q ss_pred CCCCCCccccCCCCCcEEEccCCcCccc-CccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCC
Q 001161 762 NLQRLPEELGYLEALDSLHAVGTAIREL-PPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITE 836 (1134)
Q Consensus 762 ~~~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 836 (1134)
+.+..+..+..+++|++|+|++|.++.+ |..+..+++|+.|+|++|. ++...+..+..+++|+.|+|++|.+..
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 9888888899999999999999999977 5678889999999999998 777777788999999999999998873
No 133
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=8.5e-14 Score=147.45 Aligned_cols=151 Identities=18% Similarity=0.223 Sum_probs=127.7
Q ss_pred cEEEecCCCCCCCcccccCCCcceeEecCcCccccCc-cccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCC
Q 001161 684 KELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPS-SIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSN 762 (1134)
Q Consensus 684 ~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~ 762 (1134)
+.++++++ .++.+|.....+++.|+|++|.|+.+|. .+..+++|+.|+|++|.+.+..|..|.++++|++|+|++|.+
T Consensus 14 ~~v~c~~~-~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTS-CCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCC-CcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 45666654 3555665555788888888899998876 589999999999999998888889999999999999999998
Q ss_pred CCCCCccccCCCCCcEEEccCCcCcccC-ccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCC
Q 001161 763 LQRLPEELGYLEALDSLHAVGTAIRELP-PSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITE 836 (1134)
Q Consensus 763 ~~~~p~~~~~l~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 836 (1134)
....+..|..+++|++|+|++|.++.++ ..+..+++|+.|+|++|. +....+..+..+++|+.|+|++|.+..
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 8766667889999999999999999774 568889999999999998 776666778899999999999998763
No 134
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=1.2e-14 Score=158.64 Aligned_cols=149 Identities=20% Similarity=0.276 Sum_probs=111.1
Q ss_pred CCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEcc
Q 001161 703 GNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAV 782 (1134)
Q Consensus 703 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~ 782 (1134)
.+|+.|++++|.++.+| .+..+++|+.|+|++|.+.+. +. +.++++|++|++++|.+.+ +|... . ++|+.|+++
T Consensus 41 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~ 114 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLD 114 (263)
T ss_dssp TTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECC
T ss_pred CcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEcc
Confidence 45555555556666666 577788888888888875544 33 7788888888888877655 33322 2 788888888
Q ss_pred CCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccccccccCcceeecCCCCcccccc
Q 001161 783 GTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPE 862 (1134)
Q Consensus 783 ~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~ 862 (1134)
+|.++.++ .+..+++|+.|++++|. ++... .+..+++|+.|+|++|.++.+ ..+..+++|+.|+|++|.++..|.
T Consensus 115 ~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~--~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 115 NNELRDTD-SLIHLKNLEILSIRNNK-LKSIV--MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp SSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG--GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred CCccCCCh-hhcCcccccEEECCCCc-CCCCh--HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCcc
Confidence 88888775 57788888888888887 44432 577888999999999998887 668888999999999998887664
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=4.4e-15 Score=185.40 Aligned_cols=164 Identities=20% Similarity=0.199 Sum_probs=113.0
Q ss_pred cceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCC
Q 001161 705 IETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGT 784 (1134)
Q Consensus 705 L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n 784 (1134)
+..+++..|.+...|..+..+++|+.|+|++|.+. .+|..+.++++|++|+|++|.+. .+|..++.+++|+.|+|++|
T Consensus 203 i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 203 IDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp -------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS
T ss_pred ccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC
Confidence 44556666777766777889999999999999865 77777789999999999999877 88888999999999999999
Q ss_pred cCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCC-Ccccccccc-CcceeecCCCCcc-ccc
Q 001161 785 AIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITE-LPESLGLLS-LVTELHLEGNNFE-RIP 861 (1134)
Q Consensus 785 ~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~-~L~~L~Ls~n~l~-~lp 861 (1134)
.|+.+|..++.+++|+.|+|++|. +. ..+..+..+++|+.|+|++|.++. +|..+..+. .+..|+|++|.++ .+|
T Consensus 281 ~l~~lp~~~~~l~~L~~L~L~~N~-l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 281 RLTSLPAELGSCFQLKYFYFFDNM-VT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp CCSSCCSSGGGGTTCSEEECCSSC-CC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred cCCccChhhcCCCCCCEEECCCCC-CC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 999999999999999999999997 44 345568999999999999999996 455555432 2345789999988 455
Q ss_pred cchhCCCCCcEEEeccc
Q 001161 862 ESIIQLSNLEWLFIRYC 878 (1134)
Q Consensus 862 ~~l~~l~~L~~L~Ls~n 878 (1134)
..|+.|++++|
T Consensus 359 ------~~l~~l~l~~n 369 (727)
T 4b8c_D 359 ------HERRFIEINTD 369 (727)
T ss_dssp ------CC---------
T ss_pred ------cccceeEeecc
Confidence 35777888877
No 136
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.49 E-value=1.7e-12 Score=150.32 Aligned_cols=275 Identities=15% Similarity=0.082 Sum_probs=173.9
Q ss_pred cCCccccchhHHHHHHhhcc--CCCCeeEEEEEecCCChHHHHHHHHHHHHhcc--------CCceeeeeechhHhhcC-
Q 001161 191 NEDLVGVRLPMKEIESLLRT--GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH--------FAGSFFARNVREAEETG- 259 (1134)
Q Consensus 191 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--------f~~~~~~~~~~~~~~~~- 259 (1134)
++.++||+.+++++..++.. .....+.+.|+|++|+||||+|+++++.+... ....+|+.. ....
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~ 94 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC----REVGG 94 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH----HHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC----ccCCC
Confidence 37899999999999987764 23445689999999999999999999977543 122334421 2223
Q ss_pred CHHHHHHHHHHHHhcCCCCC--CCccccHHHHHHhhcCCcceEEEecCCChHH-------HHHHhcCcCCCCCCcEEEEE
Q 001161 260 RLGDLRQQLLSTLLNDGNVK--NFPNIDLNFQSKKLTRKKVLIVFDDVNHPRQ-------IKILVGRLDLLASGSRIIIT 330 (1134)
Q Consensus 260 ~~~~l~~~ll~~l~~~~~~~--~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~-------l~~l~~~~~~~~~gsrIiiT 330 (1134)
....+..+++.++.+..... .........+.+.+..++.+|||||++.... +..+... . .+.+||+|
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~---~-~~~~iI~~ 170 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS---D-ANISVIMI 170 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS---S-SCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC---C-cceEEEEE
Confidence 56667777777764432221 2233445666677776666999999976542 3333332 2 67889999
Q ss_pred eCChhhh----hhc--CCCeEEEecCCCHHhHHHHHHHhhc---CCCCCCccHHHHHHHHHHHhc---CChH-HHHHHHH
Q 001161 331 TRDRQVL----ANC--GVDEVYQMKELVHDDALRLFSRHAF---EGDHPHESHTELACKIIKYAR---GVPL-ALEVLGR 397 (1134)
Q Consensus 331 TR~~~~~----~~~--~~~~~~~l~~L~~~ea~~Lf~~~af---~~~~~~~~~~~~~~~i~~~~~---GlPL-al~~~g~ 397 (1134)
|+..... ... .....+++++++.++..+++..++. ...... .+..+.++++++ |.|. |+..+-.
T Consensus 171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~ 247 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFR 247 (384)
T ss_dssp CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 9876321 110 1123899999999999999998753 222222 345667788888 9887 3333322
Q ss_pred H--hc----CCCHHHHHHHHHHHHcCCCCchhhhhhhhhcCCCHHHHHHHHhhhcccCCCCH-HHHHHHhhhCCCc----
Q 001161 398 Y--LY----GKRREVWENAISKWETAPPKGIQDALKISYDGLDDKEQNVFLDIACFFIDDDR-DTVTKFLDDCEFF---- 466 (1134)
Q Consensus 398 ~--L~----~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~-~~l~~~~~~~~~~---- 466 (1134)
. +. .-+.+.+..++..... ..+..+++.|++.++.++..++....+.+. +....+....|..
T Consensus 248 a~~~a~~~~~i~~~~v~~~~~~~~~-------~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~ 320 (384)
T 2qby_B 248 AAQLASGGGIIRKEHVDKAIVDYEQ-------ERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSY 320 (384)
T ss_dssp HHHHTTSSSCCCHHHHHHHHHHHHH-------HHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCH
T ss_pred HHHHhcCCCccCHHHHHHHHHHHhc-------chHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCH
Confidence 2 21 1256777777776532 346677889999999998888861110111 1222222222211
Q ss_pred --hhcchHHhhccCCeeEe
Q 001161 467 --ATSGIEVLVDKHLITIS 483 (1134)
Q Consensus 467 --~~~~i~~L~~~sLi~~~ 483 (1134)
....+..|.++++|...
T Consensus 321 ~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 321 RRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhCCCEEEE
Confidence 23457889999999875
No 137
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.47 E-value=1.1e-13 Score=139.95 Aligned_cols=133 Identities=21% Similarity=0.261 Sum_probs=55.7
Q ss_pred CCCCeeeccCCcCC-cccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcc-cCccccCCCCCCEEE
Q 001161 726 SKLSRLDLADCKSL-KSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRE-LPPSIVRLKSVRAIY 803 (1134)
Q Consensus 726 ~~L~~L~L~~n~~~-~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~-lp~~~~~l~~L~~L~ 803 (1134)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.++. +|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555443 34444444445555555555443332 334444444444444444443 333333344444444
Q ss_pred ecCCCCCCCC-cccccCCCCCCCEEeccCCCCCCCcc----ccccccCcceeecCCCCccccc
Q 001161 804 FGRNRGLSLP-ITFSVDGLQNLRDLNLNDCGITELPE----SLGLLSLVTELHLEGNNFERIP 861 (1134)
Q Consensus 804 l~~n~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~Ls~n~l~~lp 861 (1134)
+++|. +... ....+..+++|+.|++++|.++.+|. .+..+++|++|++++|.+..+|
T Consensus 102 Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 102 LSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred ccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 44433 2211 11233334444444444444443333 3334444444444444444333
No 138
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=1.3e-13 Score=139.32 Aligned_cols=135 Identities=18% Similarity=0.189 Sum_probs=115.4
Q ss_pred CCcceeEecCcCcc--ccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEE
Q 001161 703 GNIETMHLDGTALE--ELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLH 780 (1134)
Q Consensus 703 ~~L~~L~L~~n~i~--~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~ 780 (1134)
.+|+.|++++|.+. .+|..+..+++|+.|++++|.+... ..+..+++|++|++++|.+.+.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45666677777777 7888889999999999999986655 6688999999999999998888888888899999999
Q ss_pred ccCCcCcccC--ccccCCCCCCEEEecCCCCCCCCcc---cccCCCCCCCEEeccCCCCCCCccc
Q 001161 781 AVGTAIRELP--PSIVRLKSVRAIYFGRNRGLSLPIT---FSVDGLQNLRDLNLNDCGITELPES 840 (1134)
Q Consensus 781 L~~n~i~~lp--~~~~~l~~L~~L~l~~n~~~~~~~~---~~~~~l~~L~~L~Ls~n~l~~lp~~ 840 (1134)
+++|.++.+| ..+..+++|+.|++++|. +....+ ..+..+++|+.|++++|.+.++|.+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 9999999876 678899999999999998 555444 4688999999999999999988764
No 139
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=1.2e-13 Score=136.56 Aligned_cols=126 Identities=20% Similarity=0.263 Sum_probs=75.9
Q ss_pred CCCcEEeecCCCCC-CCCCccccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEe
Q 001161 750 KSLDVLNIDGCSNL-QRLPEELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLN 828 (1134)
Q Consensus 750 ~~L~~L~L~~~~~~-~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 828 (1134)
++|+.|++++|.+. +.+|..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|. +....+..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCEEE
Confidence 34445555554444 34444444555555555555555544 444555555555555555 3333344445566777777
Q ss_pred ccCCCCCCCc--cccccccCcceeecCCCCcccccc----chhCCCCCcEEEecc
Q 001161 829 LNDCGITELP--ESLGLLSLVTELHLEGNNFERIPE----SIIQLSNLEWLFIRY 877 (1134)
Q Consensus 829 Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~Ls~ 877 (1134)
+++|.++.+| ..++.+++|++|++++|.++.+|. .+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 7777777654 667777888888888888877765 577778888877653
No 140
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.41 E-value=9.7e-12 Score=144.06 Aligned_cols=305 Identities=13% Similarity=0.054 Sum_probs=183.6
Q ss_pred ccCCccccchhHHHHHHhhccC--CCCeeEEEEEecCCChHHHHHHHHHHHHhccC-----C-ceeeeeechhHhhcCCH
Q 001161 190 ENEDLVGVRLPMKEIESLLRTG--STNVYKLGIWGIGGIGKTTIAGAIFSKISRHF-----A-GSFFARNVREAEETGRL 261 (1134)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~-~~~~~~~~~~~~~~~~~ 261 (1134)
.++.++||+.+++++..++... ....+.+.|+|++|+||||+|+++++.....+ . ..+++. .......
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~ 92 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRETP 92 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSCSH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCCCH
Confidence 4478999999999999988542 34456799999999999999999998775432 2 233332 1233455
Q ss_pred HHHHHHHHHHHhcCCCCC-CCccccHHHHHHhhc--CCcceEEEecCCChHH-------HHHHhcCcCCC--CCCcEEEE
Q 001161 262 GDLRQQLLSTLLNDGNVK-NFPNIDLNFQSKKLT--RKKVLIVFDDVNHPRQ-------IKILVGRLDLL--ASGSRIII 329 (1134)
Q Consensus 262 ~~l~~~ll~~l~~~~~~~-~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~~-------l~~l~~~~~~~--~~gsrIii 329 (1134)
..+...++.++....... .........+.+.+. +++.+||||+++.... +..+....... ..+..+|.
T Consensus 93 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~ 172 (387)
T 2v1u_A 93 YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG 172 (387)
T ss_dssp HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence 667777777764332211 123333455555553 4588999999986542 22223222111 44667888
Q ss_pred EeCChhh--------hhhcCCCeEEEecCCCHHhHHHHHHHhhc---CCCCCCccHHHHHHHHHHHhc---CChHHH-HH
Q 001161 330 TTRDRQV--------LANCGVDEVYQMKELVHDDALRLFSRHAF---EGDHPHESHTELACKIIKYAR---GVPLAL-EV 394 (1134)
Q Consensus 330 TTR~~~~--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~af---~~~~~~~~~~~~~~~i~~~~~---GlPLal-~~ 394 (1134)
||+.... .... ....+.+++++.++..+++...+. ...... .+..+.++++++ |.|-.+ .+
T Consensus 173 ~t~~~~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~ 248 (387)
T 2v1u_A 173 ITNSLGFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDL 248 (387)
T ss_dssp ECSCSTTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHH
Confidence 8876632 1111 124789999999999999988752 222222 345667888888 999433 32
Q ss_pred HHHHh---c--C---CCHHHHHHHHHHHHcCCCCchhhhhhhhhcCCCHHHHHHHHhhhcccCCCC---HHH----HHHH
Q 001161 395 LGRYL---Y--G---KRREVWENAISKWETAPPKGIQDALKISYDGLDDKEQNVFLDIACFFIDDD---RDT----VTKF 459 (1134)
Q Consensus 395 ~g~~L---~--~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~---~~~----l~~~ 459 (1134)
+.... . + -+.+.++.++.... ...+.-++..|++.++..+..++....+.. ... ...+
T Consensus 249 l~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 249 LRVAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 22221 1 2 15667777766543 234566788999999999988886544432 221 1122
Q ss_pred hhhCCCc------hhcchHHhhccCCeeEec-----CCeEEEChhHHHHHHHHhhccCCCCCCCcccccchhhHHHHhhc
Q 001161 460 LDDCEFF------ATSGIEVLVDKHLITISV-----RNKIKMHDLLRAMGREIVRQESTNDPGKRSRLWHHKEVYKILSE 528 (1134)
Q Consensus 460 ~~~~~~~------~~~~i~~L~~~sLi~~~~-----~~~~~mHdlv~~~~~~i~~~e~~~~~~~~srl~~~~~i~~~l~~ 528 (1134)
....+.. ....++.|...|++.... .++++ +.+..|+++++..++.+
T Consensus 322 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~~----------------------~~~l~~~~~~i~~~l~~ 379 (387)
T 2v1u_A 322 TSTLGLEHVTLRRVSGIISELDMLGIVKSRVVSRGRYGKTR----------------------EVSLDADRLAVENALSE 379 (387)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHHHTTSEEEEEEECGGGCEEE----------------------EEEECSCHHHHHHHHHH
T ss_pred HHhcCCCCCCHHHHHHHHHHHHhCCCeEEEeecCCCCCcee----------------------EEEecCCHHHHHHHHhc
Confidence 2222211 234578888899988742 12222 22345777788888876
Q ss_pred CCC
Q 001161 529 NRG 531 (1134)
Q Consensus 529 ~~~ 531 (1134)
+..
T Consensus 380 ~~~ 382 (387)
T 2v1u_A 380 DPF 382 (387)
T ss_dssp STT
T ss_pred cHh
Confidence 554
No 141
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=5.8e-12 Score=145.89 Aligned_cols=283 Identities=15% Similarity=0.077 Sum_probs=168.5
Q ss_pred ccCCccccchhHHHHHHhhccC--CCCeeEEEEEecCCChHHHHHHHHHHHHhccCC---ceeeeeechhHhhcCCHHHH
Q 001161 190 ENEDLVGVRLPMKEIESLLRTG--STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFA---GSFFARNVREAEETGRLGDL 264 (1134)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~l 264 (1134)
.++.|+||+.+++.+.+++... ....+.+.|+|++|+||||||+++++.+...+. ..+|+.. ........+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~----~~~~~~~~~ 93 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT----RQIDTPYRV 93 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH----HHHCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC----CCCCCHHHH
Confidence 4578999999999999988742 344568999999999999999999998776542 3344421 222344455
Q ss_pred HHHHHHHHhcCCCCC-CCccccHHHHHHhhc--CCcceEEEecCCChH------HHHHHhcCcCC-CCCCcEEEEEeCCh
Q 001161 265 RQQLLSTLLNDGNVK-NFPNIDLNFQSKKLT--RKKVLIVFDDVNHPR------QIKILVGRLDL-LASGSRIIITTRDR 334 (1134)
Q Consensus 265 ~~~ll~~l~~~~~~~-~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~------~l~~l~~~~~~-~~~gsrIiiTTR~~ 334 (1134)
...++..+....... .........+.+.+. +++.+||||+++... .+..+...+.. ...+..+|+||+..
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 555555442221111 122233444555554 348999999986532 34444332211 13456778888866
Q ss_pred hhhhhcC-------CCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhc---CChHHHHHHHHHh---c-
Q 001161 335 QVLANCG-------VDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYAR---GVPLALEVLGRYL---Y- 400 (1134)
Q Consensus 335 ~~~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~---GlPLal~~~g~~L---~- 400 (1134)
....... ....+++++++.++..+++...+...........+....++++++ |.|..+..+.... .
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4322211 125899999999999999988652111111223456677788887 9998444332221 1
Q ss_pred --C---CCHHHHHHHHHHHHcCCCCchhhhhhhhhcCCCHHHHHHHHhhhcccC-CC-C--HHHH----HHHhhhCCCc-
Q 001161 401 --G---KRREVWENAISKWETAPPKGIQDALKISYDGLDDKEQNVFLDIACFFI-DD-D--RDTV----TKFLDDCEFF- 466 (1134)
Q Consensus 401 --~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~-~~-~--~~~l----~~~~~~~~~~- 466 (1134)
+ -+.+.++.++.... ...+.-.+.++++.++.++..++.+.. +. . ...+ ..+....|..
T Consensus 254 ~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~ 326 (386)
T 2qby_A 254 RMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEA 326 (386)
T ss_dssp HTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCC
T ss_pred hcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCC
Confidence 1 14566666665543 235666788999999999988886543 21 1 2211 2222221211
Q ss_pred -----hhcchHHhhccCCeeEe
Q 001161 467 -----ATSGIEVLVDKHLITIS 483 (1134)
Q Consensus 467 -----~~~~i~~L~~~sLi~~~ 483 (1134)
....++.|.+.++|...
T Consensus 327 ~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 327 VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEEE
Confidence 24567888999999765
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.39 E-value=1e-12 Score=135.90 Aligned_cols=126 Identities=20% Similarity=0.235 Sum_probs=64.6
Q ss_pred ceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCc-ccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCC
Q 001161 706 ETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPS-GLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGT 784 (1134)
Q Consensus 706 ~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n 784 (1134)
+.++++++.++.+|..+.. +|+.|++++|.+.+..+. .+..+++|++|+|++|.+.+..|..+..+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4455555666666654432 666666666655443332 2556666666666666666555666666666666666666
Q ss_pred cCcccCcc-ccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCC
Q 001161 785 AIRELPPS-IVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGI 834 (1134)
Q Consensus 785 ~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l 834 (1134)
.++.++.. +..+++|+.|+|++|. ++...+..+..+++|+.|+|++|.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCB
T ss_pred cCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 66544432 3344444444444443 2222223333333444444444433
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=6.2e-13 Score=135.46 Aligned_cols=104 Identities=19% Similarity=0.229 Sum_probs=61.1
Q ss_pred CCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCcc--ccccccCcceeec
Q 001161 775 ALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPE--SLGLLSLVTELHL 852 (1134)
Q Consensus 775 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L 852 (1134)
+|+.|++++|.++.+ ..+..+++|+.|++++|. +....+..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence 445555555544444 344444555555555554 332222223556666666666666666665 6667777777777
Q ss_pred CCCCccccccc----hhCCCCCcEEEeccccC
Q 001161 853 EGNNFERIPES----IIQLSNLEWLFIRYCER 880 (1134)
Q Consensus 853 s~n~l~~lp~~----l~~l~~L~~L~Ls~n~~ 880 (1134)
++|.++.+|.. +..+++|+.|++++|+.
T Consensus 121 ~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred cCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 77777777654 66777777777776653
No 144
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.37 E-value=5.9e-13 Score=131.55 Aligned_cols=126 Identities=20% Similarity=0.234 Sum_probs=83.6
Q ss_pred CCCCeeeccCCcCC-cccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcc-cCccccCCCCCCEEE
Q 001161 726 SKLSRLDLADCKSL-KSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRE-LPPSIVRLKSVRAIY 803 (1134)
Q Consensus 726 ~~L~~L~L~~n~~~-~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~-lp~~~~~l~~L~~L~ 803 (1134)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.++. +|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55666666666654 45566566666666666666655444 556666667777777776665 555555577777777
Q ss_pred ecCCCCCCC-CcccccCCCCCCCEEeccCCCCCCCcc----ccccccCcceeecCC
Q 001161 804 FGRNRGLSL-PITFSVDGLQNLRDLNLNDCGITELPE----SLGLLSLVTELHLEG 854 (1134)
Q Consensus 804 l~~n~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~Ls~ 854 (1134)
+++|. +.. ..+..+..+++|++|++++|.++.+|. .+..+++|+.|++++
T Consensus 95 ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 77776 433 233556777888888888888887765 577788888888764
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=8.1e-12 Score=129.07 Aligned_cols=124 Identities=19% Similarity=0.250 Sum_probs=82.2
Q ss_pred cEEEecCCCCCCCcccccCCCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCC
Q 001161 684 KELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNL 763 (1134)
Q Consensus 684 ~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~ 763 (1134)
+.++++++. ++.+|.....+|+.|+|++|.|+.+|..+..+++|+.|+|++|.+.+..+..|.++++|++|+|++|.+.
T Consensus 13 ~~l~~~~~~-l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSC-CSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCC-CCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 345555533 4445544445667777777777777767777777777777777766666666777777777777777776
Q ss_pred CCCCccccCCCCCcEEEccCCcCcccCcc-ccCCCCCCEEEecCCC
Q 001161 764 QRLPEELGYLEALDSLHAVGTAIRELPPS-IVRLKSVRAIYFGRNR 808 (1134)
Q Consensus 764 ~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~n~ 808 (1134)
...|..|..+++|+.|+|++|.++.+|.. +..+++|+.|++++|.
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 66666677777777777777777766653 4456666666666555
No 146
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.32 E-value=3e-11 Score=140.02 Aligned_cols=284 Identities=13% Similarity=0.046 Sum_probs=170.0
Q ss_pred ccCCccccchhHHHHHHhhcc----CCCCeeEEEEEecCCChHHHHHHHHHHHHhccC-CceeeeeechhHhhcCCHHHH
Q 001161 190 ENEDLVGVRLPMKEIESLLRT----GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF-AGSFFARNVREAEETGRLGDL 264 (1134)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l 264 (1134)
.++.++||+.+++++..++.. .....+.+.|+|++|+||||+|+++++...... ...+++. .........+
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~~ 90 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTAI 90 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHHH
Confidence 347899999999999988865 222334899999999999999999998876542 2334442 1233345566
Q ss_pred HHHHHHHHhcCCCCC-CCccccHHHHHHhhc--CCcceEEEecCCCh--HHHHHHhcCcCCCC----CCcEEEEEeCChh
Q 001161 265 RQQLLSTLLNDGNVK-NFPNIDLNFQSKKLT--RKKVLIVFDDVNHP--RQIKILVGRLDLLA----SGSRIIITTRDRQ 335 (1134)
Q Consensus 265 ~~~ll~~l~~~~~~~-~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~--~~l~~l~~~~~~~~----~gsrIiiTTR~~~ 335 (1134)
...++..+....... .........+.+.+. +++.+||||+++.. +.+..+...+.... .+..||++|++..
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 777776664322111 122333444444443 56889999999764 34555544433222 4677888888764
Q ss_pred hhhhcC-------CCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHh---------cCChHHHHHHHHHh
Q 001161 336 VLANCG-------VDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYA---------RGVPLALEVLGRYL 399 (1134)
Q Consensus 336 ~~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~---------~GlPLal~~~g~~L 399 (1134)
...... ....+.+++++.++..+++...+........-..+....+++++ +|.|..+..+....
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 322211 12368999999999999998875321111122356778889999 79876554443321
Q ss_pred c------CC---CHHHHHHHHHHHHcCCCCchhhhhhhhhcCCCHHHHHHHHhhhccc---CC--CCHHHHHHHh----h
Q 001161 400 Y------GK---RREVWENAISKWETAPPKGIQDALKISYDGLDDKEQNVFLDIACFF---ID--DDRDTVTKFL----D 461 (1134)
Q Consensus 400 ~------~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~---~~--~~~~~l~~~~----~ 461 (1134)
. +. +.+....++.... ...+.-.+..|+..++.++..++.+. .+ .....+...+ .
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~-------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVL-------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCE 323 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHS-------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHh-------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHH
Confidence 1 21 2333344433322 12234446788999999888888765 22 2223332222 2
Q ss_pred hCCC------chhcchHHhhccCCeeEec
Q 001161 462 DCEF------FATSGIEVLVDKHLITISV 484 (1134)
Q Consensus 462 ~~~~------~~~~~i~~L~~~sLi~~~~ 484 (1134)
..+. .....+..|.++++|....
T Consensus 324 ~~~~~~~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 324 EYGERPRVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HcCCCCCCHHHHHHHHHHHHhCCCeEEee
Confidence 2221 1235688899999998853
No 147
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.31 E-value=9.5e-12 Score=128.54 Aligned_cols=124 Identities=18% Similarity=0.221 Sum_probs=105.8
Q ss_pred cEEEecCCCCCCCcccccCCCcceeEecCcCccccCcc--ccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCC
Q 001161 684 KELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSS--IECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCS 761 (1134)
Q Consensus 684 ~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~--~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~ 761 (1134)
++++++++. ++.+|.....+++.|++++|.|..++.. +..+++|++|+|++|.+.+..|..|.++++|++|+|++|.
T Consensus 11 ~~l~~s~~~-l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSC-CSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCC-cCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 566666643 3556655556788888888888888764 8899999999999999888888899999999999999999
Q ss_pred CCCCCCccccCCCCCcEEEccCCcCccc-CccccCCCCCCEEEecCCC
Q 001161 762 NLQRLPEELGYLEALDSLHAVGTAIREL-PPSIVRLKSVRAIYFGRNR 808 (1134)
Q Consensus 762 ~~~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~l~~n~ 808 (1134)
+.+..+..+..+++|++|+|++|.++.+ |..+..+++|+.|++++|.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 9888888899999999999999999965 6678889999999999998
No 148
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.29 E-value=1.5e-11 Score=127.13 Aligned_cols=126 Identities=22% Similarity=0.324 Sum_probs=80.6
Q ss_pred ceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCc
Q 001161 706 ETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTA 785 (1134)
Q Consensus 706 ~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~ 785 (1134)
+.++++++.++.+|..+. ++|+.|+|++|.+. .+|..+.++++|++|+|++|.+.+..+..|..+++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 467777777777776543 46777777776643 555566666666666666666655555556666666666666665
Q ss_pred CcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCcc-ccccccCcceeecCCCCcc
Q 001161 786 IRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPE-SLGLLSLVTELHLEGNNFE 858 (1134)
Q Consensus 786 i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~ 858 (1134)
++.++ +..|.++++|+.|+|++|.++.+|. .+..+++|+.|+|++|.+.
T Consensus 90 l~~i~------------------------~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIP------------------------PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCC------------------------TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeC------------------------HHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 55444 3345556666666666666776655 3666777777777777765
No 149
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.29 E-value=5.1e-14 Score=146.60 Aligned_cols=148 Identities=20% Similarity=0.236 Sum_probs=87.6
Q ss_pred ccCCCCCCeeeccCCcCCcccCc------ccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCccccC
Q 001161 722 IECLSKLSRLDLADCKSLKSLPS------GLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSIVR 795 (1134)
Q Consensus 722 ~~~l~~L~~L~L~~n~~~~~lp~------~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~ 795 (1134)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.++.+|..+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~ 91 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAV 91 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhc
Confidence 34455666666666666555554 56666666666666665544 45 566666666666666666666665555
Q ss_pred CCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCcc--ccccccCcceeecCCCCcccccc-----------
Q 001161 796 LKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPE--SLGLLSLVTELHLEGNNFERIPE----------- 862 (1134)
Q Consensus 796 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~Ls~n~l~~lp~----------- 862 (1134)
+++|+.|++++|. +... + .+..+++|+.|+|++|.++.++. .+..+++|++|++++|.++..+.
T Consensus 92 ~~~L~~L~L~~N~-l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 92 ADTLEELWISYNQ-IASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHCSEEEEEEEE-CCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred CCcCCEEECcCCc-CCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 5666666666665 3332 1 34555666666666666665543 45566666666666666653321
Q ss_pred chhCCCCCcEEE
Q 001161 863 SIIQLSNLEWLF 874 (1134)
Q Consensus 863 ~l~~l~~L~~L~ 874 (1134)
.+..+++|+.|+
T Consensus 169 ~~~~l~~L~~Ld 180 (198)
T 1ds9_A 169 VVKRLPNLKKLD 180 (198)
T ss_dssp HHHHCSSCSEEC
T ss_pred HHHhCCCcEEEC
Confidence 155566666655
No 150
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.28 E-value=3.9e-12 Score=129.52 Aligned_cols=135 Identities=14% Similarity=0.119 Sum_probs=96.5
Q ss_pred ccCCCCCCeeeccCCcCCcccCcccCCC-CCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCccc-cCCCCC
Q 001161 722 IECLSKLSRLDLADCKSLKSLPSGLCKL-KSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPSI-VRLKSV 799 (1134)
Q Consensus 722 ~~~l~~L~~L~L~~n~~~~~lp~~l~~l-~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~-~~l~~L 799 (1134)
+.++++|+.|++++|.+. .+|. +..+ ++|++|++++|.+.+. ..+..+++|++|++++|.++.+|..+ ..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 455667777777777654 3444 3333 3777777777766543 45677777888888888887777654 677888
Q ss_pred CEEEecCCCCCCCCcc-cccCCCCCCCEEeccCCCCCCCccc----cccccCcceeecCCCCccccc
Q 001161 800 RAIYFGRNRGLSLPIT-FSVDGLQNLRDLNLNDCGITELPES----LGLLSLVTELHLEGNNFERIP 861 (1134)
Q Consensus 800 ~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~lp~~----l~~l~~L~~L~Ls~n~l~~lp 861 (1134)
+.|++++|. +..... ..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|.+....
T Consensus 91 ~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~~ 156 (176)
T 1a9n_A 91 TELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQ 156 (176)
T ss_dssp CEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHHH
T ss_pred CEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHHH
Confidence 888888887 333222 2577888889999999988888875 888999999999999887443
No 151
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=3.5e-11 Score=122.55 Aligned_cols=128 Identities=20% Similarity=0.284 Sum_probs=71.7
Q ss_pred cceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCC
Q 001161 705 IETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGT 784 (1134)
Q Consensus 705 L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n 784 (1134)
.+.+++++++++.+|..+. ++|+.|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3455666666666664432 56666777666655444444556666666666666655444444555666666666666
Q ss_pred cCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccc-cccccCcceeecCCCCcc
Q 001161 785 AIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPES-LGLLSLVTELHLEGNNFE 858 (1134)
Q Consensus 785 ~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~ 858 (1134)
.++.+|.. .+..+++|+.|+|++|.++.+|.. +..+++|++|+|++|.+.
T Consensus 87 ~l~~~~~~------------------------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNG------------------------VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTT------------------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHH------------------------HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 55554432 233445555555555555555443 345566666666666555
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=7.3e-12 Score=141.54 Aligned_cols=124 Identities=15% Similarity=0.127 Sum_probs=91.5
Q ss_pred CCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCcc-ccCCCCCCEEEecCCCCCCCCcccccCCCCCCC-E
Q 001161 749 LKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPPS-IVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLR-D 826 (1134)
Q Consensus 749 l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~-~ 826 (1134)
+.+++.+.+.++-...........+++|+.|++.+|.++.+|.. |.++++|+.|++.+| +.......|.++++|+ .
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEE
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEE
Confidence 45566666665321111111112378889999998888888764 667888999998876 5555666788899998 9
Q ss_pred EeccCCCCCCCc-cccccccCcceeecCCCCcccccc-chhCCCCCcEEEe
Q 001161 827 LNLNDCGITELP-ESLGLLSLVTELHLEGNNFERIPE-SIIQLSNLEWLFI 875 (1134)
Q Consensus 827 L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L 875 (1134)
|++.+ +++.++ .+|.++++|+.|++++|+++.++. .|.++++|+.|+.
T Consensus 279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99988 788775 578889999999999999998875 6888889988763
No 153
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.21 E-value=1.1e-10 Score=125.40 Aligned_cols=200 Identities=15% Similarity=0.096 Sum_probs=121.7
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQ 267 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 267 (1134)
|.....++||+..++.+..++..+. ..+.+.|+|++|+||||+|+++++.+...+...... . ...... ..
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~-~-------~~~~~~-~~ 88 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP-C-------GVCDNC-RE 88 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSC-C-------SCSHHH-HH
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC-C-------cccHHH-HH
Confidence 4455679999999999999987543 235789999999999999999998776543211100 0 000000 00
Q ss_pred HHHHHhcC----CCCCCCccccHHHHHHh-----hcCCcceEEEecCCC--hHHHHHHhcCcCCCCCCcEEEEEeCChhh
Q 001161 268 LLSTLLND----GNVKNFPNIDLNFQSKK-----LTRKKVLIVFDDVNH--PRQIKILVGRLDLLASGSRIIITTRDRQV 336 (1134)
Q Consensus 268 ll~~l~~~----~~~~~~~~~~~~~l~~~-----L~~k~~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIiiTTR~~~~ 336 (1134)
+....... .............+.+. ..+++.+||+||++. ...++.+...+.....+.++|+||+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 89 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp HHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred HhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 00000000 00000000001111121 134678999999965 44566666555444567889998876543
Q ss_pred hh-h-cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHh
Q 001161 337 LA-N-CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLGRYL 399 (1134)
Q Consensus 337 ~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L 399 (1134)
+. . ......+++++++.+|..+++...+...... -..+....++++++|+|..+..+...+
T Consensus 169 ~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 169 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 21 1 1224689999999999999999877432221 224667889999999999988776544
No 154
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=1.4e-10 Score=118.01 Aligned_cols=125 Identities=20% Similarity=0.275 Sum_probs=97.8
Q ss_pred ccEEEecCCCCCCCcccccCCCcceeEecCcCccccCcc-ccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCC
Q 001161 683 LKELNLSGCSKLKRLPEISSGNIETMHLDGTALEELPSS-IECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCS 761 (1134)
Q Consensus 683 L~~L~Ls~~~~l~~~~~~~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~ 761 (1134)
.+.++++++. +..+|.....+|+.|++++|.++.+|.. +..+++|++|++++|.+.+..+..+.++++|++|++++|.
T Consensus 9 ~~~l~~~~~~-l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKG-LTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSC-CSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCC-CccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 4556666543 4455554456788888888888888765 6889999999999998776666667899999999999999
Q ss_pred CCCCCCccccCCCCCcEEEccCCcCcccCccc-cCCCCCCEEEecCCC
Q 001161 762 NLQRLPEELGYLEALDSLHAVGTAIRELPPSI-VRLKSVRAIYFGRNR 808 (1134)
Q Consensus 762 ~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~-~~l~~L~~L~l~~n~ 808 (1134)
+.+..+..+..+++|++|++++|.++.+|..+ ..+++|+.|++++|.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 88777777889999999999999999887653 556677777776665
No 155
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.19 E-value=2.3e-13 Score=141.58 Aligned_cols=134 Identities=19% Similarity=0.207 Sum_probs=108.0
Q ss_pred CCCCCcEEeecCCCCCCCCCc------cccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCC
Q 001161 748 KLKSLDVLNIDGCSNLQRLPE------ELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGL 821 (1134)
Q Consensus 748 ~l~~L~~L~L~~~~~~~~~p~------~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 821 (1134)
....++.++++.+.+.+.+|. .+..+++|++|++++|.++.+| .+..+++|+.|++++|. +.. .+..+..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~-l~~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKK-IENLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECS-CSSHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-ccc-ccchhhcC
Confidence 445555566666655555554 8899999999999999999988 88889999999999997 442 33455667
Q ss_pred CCCCEEeccCCCCCCCccccccccCcceeecCCCCcccccc--chhCCCCCcEEEeccccCCCccC
Q 001161 822 QNLRDLNLNDCGITELPESLGLLSLVTELHLEGNNFERIPE--SIIQLSNLEWLFIRYCERLQSLP 885 (1134)
Q Consensus 822 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~Ls~n~~l~~lp 885 (1134)
++|+.|+|++|.++.+| .+..+++|+.|+|++|+++.+|. .+..+++|++|++++|++.+..|
T Consensus 93 ~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 93 DTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 89999999999999887 68889999999999999997764 78889999999999998766544
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.19 E-value=1.2e-11 Score=139.64 Aligned_cols=189 Identities=15% Similarity=0.145 Sum_probs=112.6
Q ss_pred CCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcC----cccC-ccccCCC--
Q 001161 725 LSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAI----RELP-PSIVRLK-- 797 (1134)
Q Consensus 725 l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i----~~lp-~~~~~l~-- 797 (1134)
+++|+.|+|.+ .+...-+.+|.++++|+.|++.+|.+....+..|..+.++..+.+..+.. ..+. ..+.++.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 66666666666 44444444566666677777666665555555565555555555444211 1111 1122233
Q ss_pred ------------------------CCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCcc-ccccccCcceeec
Q 001161 798 ------------------------SVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPE-SLGLLSLVTELHL 852 (1134)
Q Consensus 798 ------------------------~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L 852 (1134)
++..+.+.++- ...........+++|+.|+|++|+++.+|. .|.++++|+.|+|
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKL-DNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECC-CHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeee-cHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 33344443221 000000011237889999999999998876 5788999999999
Q ss_pred CCCCccccc-cchhCCCCCc-EEEeccccCCCccC-C---cCCCcCeEeccCCcccccccC-CCCCCCCccceeee
Q 001161 853 EGNNFERIP-ESIIQLSNLE-WLFIRYCERLQSLP-K---LPCNLIWLDAHHCTALESLPG-LFPSSNESYLRTLY 921 (1134)
Q Consensus 853 s~n~l~~lp-~~l~~l~~L~-~L~Ls~n~~l~~lp-~---~~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~ 921 (1134)
.+| ++.|+ ..|.+|++|+ .|++.+ .+..++ . ..++|+.|+++++. +..++. .| .++++|+.++
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF--~~~~~L~~ly 327 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDELF--GNGVPSKLIY 327 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTTT--CTTCCCCEEE
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc-cCccchhhh--cCCcchhhhc
Confidence 887 88777 4688899998 999987 344444 2 34678888887654 444443 33 4677888776
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.16 E-value=7.4e-10 Score=127.87 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=33.0
Q ss_pred cccCCCCCCCEEeccCCCCCCCcc-ccccccCcceeecCCCCccccc-cchhCCCCCcEEEeccccC
Q 001161 816 FSVDGLQNLRDLNLNDCGITELPE-SLGLLSLVTELHLEGNNFERIP-ESIIQLSNLEWLFIRYCER 880 (1134)
Q Consensus 816 ~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~~ 880 (1134)
..|.++++|+.+.|. ++++.++. +|.++++|+.|.|..| ++.++ ..|.++ +|+.|++++|..
T Consensus 294 ~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 294 YCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp TTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred HHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 345555566666655 33554433 4555566666666433 44443 345555 666666666543
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.11 E-value=3.7e-09 Score=122.04 Aligned_cols=211 Identities=8% Similarity=0.045 Sum_probs=144.0
Q ss_pred CCcceeEecCcCccccCc-cccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEc
Q 001161 703 GNIETMHLDGTALEELPS-SIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHA 781 (1134)
Q Consensus 703 ~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L 781 (1134)
.+|+.+.+.. .++.++. .|.+|++|+.+++.+|.+...-...|. ..+|+.+.+..+ +...-...|.++++|+.+.+
T Consensus 157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 3455555553 4555654 477888888888887765544444454 578888888743 44444566778888888888
Q ss_pred cCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCC-----CCc-cccccccCcceeecCCC
Q 001161 782 VGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGIT-----ELP-ESLGLLSLVTELHLEGN 855 (1134)
Q Consensus 782 ~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-----~lp-~~l~~l~~L~~L~Ls~n 855 (1134)
.++ ++.++...+.-.+|+.+.+.++ +.......|.++++|+.+++.+|.+. .++ ..|.++++|+.+.|. +
T Consensus 234 ~~~-l~~I~~~aF~~~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~ 309 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRESGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-E 309 (401)
T ss_dssp CTT-CCEECTTTTTTCCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-T
T ss_pred CCC-ccCccccccccCCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-C
Confidence 764 6666655444478899988543 45555667889999999999888765 454 478899999999999 4
Q ss_pred Cccccc-cchhCCCCCcEEEeccccCCCccCC----cCCCcCeEeccCCcccccccCCCCCCCC-ccceeeeccCC
Q 001161 856 NFERIP-ESIIQLSNLEWLFIRYCERLQSLPK----LPCNLIWLDAHHCTALESLPGLFPSSNE-SYLRTLYLSDN 925 (1134)
Q Consensus 856 ~l~~lp-~~l~~l~~L~~L~Ls~n~~l~~lp~----~~~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~Ls~n 925 (1134)
.++.++ ..|.+|++|+.|.|..+ +..++. .. +|+.|++.++.......+.+ ..+ .+++.|.+..+
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F--~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVW--YGFPDDITVIRVPAE 380 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSC--CCSCTTCCEEEECGG
T ss_pred ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcccccccc--cCCCCCccEEEeCHH
Confidence 588886 56888999999999765 444442 23 89999998875433322222 233 35667776555
No 159
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.10 E-value=2.8e-10 Score=115.23 Aligned_cols=102 Identities=20% Similarity=0.338 Sum_probs=69.0
Q ss_pred cEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccc-cccccCcceeecCCC
Q 001161 777 DSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPES-LGLLSLVTELHLEGN 855 (1134)
Q Consensus 777 ~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n 855 (1134)
+.+++++|.++.+|..+. ++|+.|+|++|. +....+..+.++++|+.|+|++|+|+.+|.. +..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 456666666666665543 566666666665 5555555666777777777777777777654 467777777777777
Q ss_pred Cccccccc-hhCCCCCcEEEeccccCC
Q 001161 856 NFERIPES-IIQLSNLEWLFIRYCERL 881 (1134)
Q Consensus 856 ~l~~lp~~-l~~l~~L~~L~Ls~n~~l 881 (1134)
+|+.+|.. +..+++|+.|+|++|++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 77777654 667777777777777654
No 160
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.09 E-value=1.1e-09 Score=115.75 Aligned_cols=191 Identities=12% Similarity=0.075 Sum_probs=119.2
Q ss_pred CCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHH
Q 001161 187 FQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQ 266 (1134)
Q Consensus 187 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 266 (1134)
.|.....++|++..++++.+++.... .+.+.|+|++|+|||++|+++++.+........++.. ......+...+..
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM--NASDERGIDVVRH 87 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEE--ETTCTTCHHHHHH
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEe--ccccccChHHHHH
Confidence 34456789999999999999997543 2338999999999999999999876443322222211 1111122222222
Q ss_pred HHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeCChhhh-hh-cCC
Q 001161 267 QLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTRDRQVL-AN-CGV 342 (1134)
Q Consensus 267 ~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR~~~~~-~~-~~~ 342 (1134)
.+ ........ ....++.+||+||++.. ...+.+...+.....+.++|+||+..... .. ...
T Consensus 88 ~~-~~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r 152 (226)
T 2chg_A 88 KI-KEFARTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (226)
T ss_dssp HH-HHHHTSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HH-HHHhcccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHh
Confidence 11 11111100 01246789999999764 33455554444445678899998866421 11 122
Q ss_pred CeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHHHH
Q 001161 343 DEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLGRY 398 (1134)
Q Consensus 343 ~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~ 398 (1134)
...+++++++.++..+++...+...... -..+....+++.++|.|..+..+...
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CceeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3488999999999999998876422211 22456778899999999876554433
No 161
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.08 E-value=3.7e-10 Score=113.90 Aligned_cols=104 Identities=21% Similarity=0.350 Sum_probs=69.3
Q ss_pred CcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCccc-cccccCcceeecCC
Q 001161 776 LDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPES-LGLLSLVTELHLEG 854 (1134)
Q Consensus 776 L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~ 854 (1134)
.+.+++++|.++.+|..+. ++|+.|+|++|. ++...+..+.++++|++|+|++|+|+.+|.. +..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3556666666666665442 566666666665 5555555666777777777777777776653 46777777777777
Q ss_pred CCcccccc-chhCCCCCcEEEeccccCCC
Q 001161 855 NNFERIPE-SIIQLSNLEWLFIRYCERLQ 882 (1134)
Q Consensus 855 n~l~~lp~-~l~~l~~L~~L~Ls~n~~l~ 882 (1134)
|+|+.+|. .+.++++|+.|+|++|++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 77777765 36677777777777776543
No 162
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=7e-10 Score=111.90 Aligned_cols=102 Identities=23% Similarity=0.266 Sum_probs=66.5
Q ss_pred cceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCC
Q 001161 705 IETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGT 784 (1134)
Q Consensus 705 L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n 784 (1134)
.+.+++++|.++.+|..+. ++|+.|+|++|.+.+..|..|.++++|++|+|++|.+.+..+..|..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4566666677777776553 67777777777766666666777777777777777666555555666777777777777
Q ss_pred cCcccCcc-ccCCCCCCEEEecCCC
Q 001161 785 AIRELPPS-IVRLKSVRAIYFGRNR 808 (1134)
Q Consensus 785 ~i~~lp~~-~~~l~~L~~L~l~~n~ 808 (1134)
.|+.+|.. +..+++|+.|+|++|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 76666543 4445555555555554
No 163
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.05 E-value=7.4e-10 Score=112.13 Aligned_cols=101 Identities=21% Similarity=0.240 Sum_probs=57.1
Q ss_pred ceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCc
Q 001161 706 ETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTA 785 (1134)
Q Consensus 706 ~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~ 785 (1134)
+.+++++|.++.+|..+. ++|+.|+|++|.+.+..|..|.++++|++|+|++|.+.+..+..|..+++|+.|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 455566666666666543 566666666666555555556666666666666665554444445556666666666666
Q ss_pred CcccCcc-ccCCCCCCEEEecCCC
Q 001161 786 IRELPPS-IVRLKSVRAIYFGRNR 808 (1134)
Q Consensus 786 i~~lp~~-~~~l~~L~~L~l~~n~ 808 (1134)
|+.+|.. +..+++|+.|+|++|.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred cceeCHHHhccccCCCEEEeCCCC
Confidence 5555443 3334444444444443
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.96 E-value=2.2e-08 Score=115.87 Aligned_cols=305 Identities=11% Similarity=0.055 Sum_probs=140.6
Q ss_pred ccccCccccccCCCccEEEEecCCcccCcceeeccCCCC-cCeeEEEeecCCCCCCCCCCC--CcccceEeeCCCCCccc
Q 001161 547 DINLHPNVFAKMPNLRILKFYNSMDEENKCKVSHFQGSE-FTEVRYLHWHGYPLKSLPSNI--HPEKLVLLEMPYSNIEQ 623 (1134)
Q Consensus 547 ~~~l~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~i~~ 623 (1134)
...+...+|.++.+|+.+.+.++. ..+. ...+. +.+|+.+++..+ ++.++... +..+|+.+.++.+ +..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~i-----~~I~-~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~ 130 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPSTV-----REIG-EFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKS 130 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTTC-----CEEC-TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCE
T ss_pred EeEhHHHHhhCCCCceEEEeCCCc-----cCcc-hhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eee
Confidence 456788899999999999885431 1111 12222 277888877643 56665543 3566666666543 333
Q ss_pred cchh-hhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCc-c-CcCcccEEEecCCCCCCCcccc
Q 001161 624 LFDI-VQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDR-I-HLELLKELNLSGCSKLKRLPEI 700 (1134)
Q Consensus 624 l~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-~-~l~~L~~L~Ls~~~~l~~~~~~ 700 (1134)
+... +.++..+....... ...+. ...|.++++|+.+.+.++. ..++.. + ++.+|+.+.+..+ ++.++..
T Consensus 131 i~~~aF~~~~~~~~~~~~~---~~~i~-~~aF~~c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~ 202 (394)
T 4fs7_A 131 IGVEAFKGCDFKEITIPEG---VTVIG-DEAFATCESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPRN--LKIIRDY 202 (394)
T ss_dssp ECTTTTTTCCCSEEECCTT---CCEEC-TTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCTT--CCEECTT
T ss_pred ecceeeecccccccccCcc---ccccc-hhhhcccCCCcEEecCCcc--ceeccccccCCCCceEEEcCCC--ceEeCch
Confidence 3222 22222211111111 11111 3457777777777776431 223322 2 4566666666542 2222211
Q ss_pred cC---CCcceeEecCcCccccCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCc
Q 001161 701 SS---GNIETMHLDGTALEELPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALD 777 (1134)
Q Consensus 701 ~~---~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~ 777 (1134)
.. ..|+.+.+..+. ..+........+|+.+.+.... ...-...+.++.+|+.+.+..+. .......+..+..|+
T Consensus 203 ~F~~~~~L~~i~~~~~~-~~i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~ 279 (394)
T 4fs7_A 203 CFAECILLENMEFPNSL-YYLGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLK 279 (394)
T ss_dssp TTTTCTTCCBCCCCTTC-CEECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCC
T ss_pred hhccccccceeecCCCc-eEeehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCc-ceeeccccccccccc
Confidence 11 233333333221 1222222333445554443321 11122334455555555554431 222233444455555
Q ss_pred EEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCc-cccccccCcceeecCCCC
Q 001161 778 SLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELP-ESLGLLSLVTELHLEGNN 856 (1134)
Q Consensus 778 ~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~ 856 (1134)
.+....+.+.. ..+..+.+|+.+.+..+ +.......|.++.+|+.++|.+ .++.+. .+|.++++|+.+.|..+
T Consensus 280 ~~~~~~~~i~~--~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~- 353 (394)
T 4fs7_A 280 KVIYGSVIVPE--KTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS- 353 (394)
T ss_dssp EEEECSSEECT--TTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-
T ss_pred eeccCceeecc--ccccccccccccccccc--cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-
Confidence 55544432211 12344555555555432 2223333455555555555543 244443 24555555555555544
Q ss_pred ccccc-cchhCCCCCcEEEec
Q 001161 857 FERIP-ESIIQLSNLEWLFIR 876 (1134)
Q Consensus 857 l~~lp-~~l~~l~~L~~L~Ls 876 (1134)
++.++ ..|.+|++|+.++|.
T Consensus 354 l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 354 LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CCEECTTTBTTCTTCCEEEEE
T ss_pred ccEehHHHhhCCCCCCEEEEC
Confidence 44443 245555555555554
No 165
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.94 E-value=4.7e-09 Score=118.01 Aligned_cols=186 Identities=16% Similarity=0.206 Sum_probs=114.9
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccC-Cc-eeeeeechhHhhcCCHHHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF-AG-SFFARNVREAEETGRLGDLR 265 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~l~ 265 (1134)
|...++++|++..++.+..++..+.. +.+.|+|++|+||||+|+++++.+.... .. .+++. .....+...+
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~~~~~~~i- 89 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGNM--PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN----ASDDRGIDVV- 89 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCCC--CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC----TTSCCSHHHH-
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCCC--CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec----CccccChHHH-
Confidence 44557799999999999999875432 3389999999999999999998764322 11 12221 1111122222
Q ss_pred HHHHHHHhcCCCCCCCccccHHHHHHhh-cCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeCChhh-hhh-c
Q 001161 266 QQLLSTLLNDGNVKNFPNIDLNFQSKKL-TRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTRDRQV-LAN-C 340 (1134)
Q Consensus 266 ~~ll~~l~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR~~~~-~~~-~ 340 (1134)
++++..+.... ..+ .+++.+||+||++.. ...+.+...+.....++++|+||+...- ... .
T Consensus 90 ~~~~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~ 155 (323)
T 1sxj_B 90 RNQIKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQ 155 (323)
T ss_dssp HTHHHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHH
Confidence 22222211000 011 345789999999763 3344444443334567888888876532 111 1
Q ss_pred CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHH-HHHHH
Q 001161 341 GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLA-LEVLG 396 (1134)
Q Consensus 341 ~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa-l~~~g 396 (1134)
.....+++.+++.++..+++...+...... -..+.+..+++.++|.|.. +..+.
T Consensus 156 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 156 SQCAILRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhceEEeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 233589999999999999998876322211 2245678899999999954 44443
No 166
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.85 E-value=1.7e-10 Score=131.98 Aligned_cols=132 Identities=17% Similarity=0.113 Sum_probs=56.5
Q ss_pred CCCCeeeccCCcCCcccCccc-CCCCCCcEEeecCCCCCCCCCccc-----cCCCCCcEEEccCCcCcc-----cCcccc
Q 001161 726 SKLSRLDLADCKSLKSLPSGL-CKLKSLDVLNIDGCSNLQRLPEEL-----GYLEALDSLHAVGTAIRE-----LPPSIV 794 (1134)
Q Consensus 726 ~~L~~L~L~~n~~~~~lp~~l-~~l~~L~~L~L~~~~~~~~~p~~~-----~~l~~L~~L~L~~n~i~~-----lp~~~~ 794 (1134)
++|+.|+|++|.+...-...+ ..+++|++|+|++|.+.......+ ...++|++|+|++|.|+. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 456666666655433211111 123455555665555433222221 234455555555555542 222334
Q ss_pred CCCCCCEEEecCCCCCCCCc----ccccCCCCCCCEEeccCCCCCC-----CccccccccCcceeecCCCCcc
Q 001161 795 RLKSVRAIYFGRNRGLSLPI----TFSVDGLQNLRDLNLNDCGITE-----LPESLGLLSLVTELHLEGNNFE 858 (1134)
Q Consensus 795 ~l~~L~~L~l~~n~~~~~~~----~~~~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~ 858 (1134)
.+++|+.|+|++|. +.... ...+...++|++|+|++|.|+. ++..+...++|++|+|++|.|+
T Consensus 181 ~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 44445555555444 22110 1122333445555555554442 2223333444555555555444
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.84 E-value=3.9e-08 Score=113.78 Aligned_cols=305 Identities=11% Similarity=0.092 Sum_probs=181.6
Q ss_pred ccccCccccccCCCccEEEEecCCcccCcceeeccCCCCcCeeEEEeecCCCCCCCCCC-CCcccceEeeCCCCCcccc-
Q 001161 547 DINLHPNVFAKMPNLRILKFYNSMDEENKCKVSHFQGSEFTEVRYLHWHGYPLKSLPSN-IHPEKLVLLEMPYSNIEQL- 624 (1134)
Q Consensus 547 ~~~l~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~-~~l~~L~~L~L~~n~i~~l- 624 (1134)
...+...+|.++++|+.+.+.++. ..+.......+..|+.+.+..+ ++.++.. |.-..+..+.+..+ +..+
T Consensus 82 i~~I~~~aF~~c~~L~~i~lp~~l-----~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~-~~~i~ 154 (394)
T 4fs7_A 82 VREIGEFAFENCSKLEIINIPDSV-----KMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEG-VTVIG 154 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTTC-----CEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTT-CCEEC
T ss_pred ccCcchhHhhCCCCCcEEEeCCCc-----eEccchhhcccccchhhcccCc-eeeecceeeecccccccccCcc-ccccc
Confidence 446778899999999999986532 1111111111245555444322 2322222 11111222222211 1222
Q ss_pred chhhhccccchhhccccccCcCCCCCCCCCcCCCCCcEEEccCCCCCcccCCcc--CcCcccEEEecCCCCCCCcccccC
Q 001161 625 FDIVQNHGKLYQIITAAFNFFSKTPTPLSTQHLNKLAILNLSGCGNLQSLPDRI--HLELLKELNLSGCSKLKRLPEISS 702 (1134)
Q Consensus 625 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~--~l~~L~~L~Ls~~~~l~~~~~~~~ 702 (1134)
...+.++.+|+.+.+..+. ..++ ...|..+.+|+.+++..+ ...++... ++..|+.+.+..+...-.-.....
T Consensus 155 ~~aF~~c~~L~~i~l~~~~--~~I~-~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~ 229 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSM--ETLH-NGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLYYLGDFALSK 229 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC--CEEC-TTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTT
T ss_pred hhhhcccCCCcEEecCCcc--ceec-cccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCceEeehhhccc
Confidence 2345566667766665432 2222 345677777777777653 22333222 466666666554321111111112
Q ss_pred CCcceeEecCcCccccCc-cccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEc
Q 001161 703 GNIETMHLDGTALEELPS-SIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHA 781 (1134)
Q Consensus 703 ~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L 781 (1134)
.+|+.+.+..+ +..+.. .+..+.+|+.+.+..+. ...-...+..+..|+.+......+ ....+..+.+|+.+.+
T Consensus 230 ~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 230 TGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKL 304 (394)
T ss_dssp CCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEE
T ss_pred CCCceEEECCC-ceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCceee---cccccccccccccccc
Confidence 56666666533 344443 37788889999887753 344455678888898888766432 2245777889999998
Q ss_pred cCCcCcccCc-cccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCcc-ccccccCcceeecCCCCccc
Q 001161 782 VGTAIRELPP-SIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPE-SLGLLSLVTELHLEGNNFER 859 (1134)
Q Consensus 782 ~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~ 859 (1134)
.++ ++.++. .+.++++|+.+.+..+ +.......|.++.+|+.+.|..+ ++.+.. +|.++++|+.++|..+ ++.
T Consensus 305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~ 379 (394)
T 4fs7_A 305 LDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQ 379 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGG
T ss_pred ccc-cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEE
Confidence 765 666654 5677899999999743 45555668889999999999876 777754 7889999999999754 566
Q ss_pred cccchhCCCCCcEE
Q 001161 860 IPESIIQLSNLEWL 873 (1134)
Q Consensus 860 lp~~l~~l~~L~~L 873 (1134)
+...+.++++|+.+
T Consensus 380 ~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 380 YRYDFEDTTKFKWI 393 (394)
T ss_dssp GGGGBCTTCEEEEE
T ss_pred hhheecCCCCCcEE
Confidence 66678888888765
No 168
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.84 E-value=1.6e-10 Score=132.07 Aligned_cols=156 Identities=18% Similarity=0.178 Sum_probs=95.9
Q ss_pred CCCCCeeeccCCcCCcccC----cccC-CCCCCcEEeecCCCCCCCCCcc-ccCCCCCcEEEccCCcCcccC-----ccc
Q 001161 725 LSKLSRLDLADCKSLKSLP----SGLC-KLKSLDVLNIDGCSNLQRLPEE-LGYLEALDSLHAVGTAIRELP-----PSI 793 (1134)
Q Consensus 725 l~~L~~L~L~~n~~~~~lp----~~l~-~l~~L~~L~L~~~~~~~~~p~~-~~~l~~L~~L~L~~n~i~~lp-----~~~ 793 (1134)
+++|+.|+|++|.+..... ..+. ..++|++|+|++|.+....... ...+++|+.|+|++|.++... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3567788888877654322 2222 3368888888888765432222 223567888888888876322 122
Q ss_pred -cCCCCCCEEEecCCCCCCCC----cccccCCCCCCCEEeccCCCCCC-----CccccccccCcceeecCCCCccc----
Q 001161 794 -VRLKSVRAIYFGRNRGLSLP----ITFSVDGLQNLRDLNLNDCGITE-----LPESLGLLSLVTELHLEGNNFER---- 859 (1134)
Q Consensus 794 -~~l~~L~~L~l~~n~~~~~~----~~~~~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~---- 859 (1134)
...++|+.|+|++|. ++.. ....+..+++|++|+|++|.++. ++..+..+++|++|+|++|.|+.
T Consensus 151 ~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 235677888887776 3321 11233556777777777777763 34556666777777777777762
Q ss_pred -cccchhCCCCCcEEEeccccCC
Q 001161 860 -IPESIIQLSNLEWLFIRYCERL 881 (1134)
Q Consensus 860 -lp~~l~~l~~L~~L~Ls~n~~l 881 (1134)
++..+..+++|++|+|++|++.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHhCCCCCEEeccCCCCC
Confidence 3445556677777777777654
No 169
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.82 E-value=1.2e-08 Score=114.98 Aligned_cols=190 Identities=17% Similarity=0.171 Sum_probs=116.7
Q ss_pred CCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeee-echhHhhcCCHHHHH
Q 001161 187 FQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFAR-NVREAEETGRLGDLR 265 (1134)
Q Consensus 187 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~l~ 265 (1134)
.|...++++|++..++.+..++..+. .+.+.|+|++|+||||+|+++++.+........++. +..... +...+.
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~~ 94 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER---GINVIR 94 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH---HHHTTH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccC---chHHHH
Confidence 34556789999999999999987543 334899999999999999999987643321111221 110000 011111
Q ss_pred HHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeCChhhh-hhc-C
Q 001161 266 QQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTRDRQVL-ANC-G 341 (1134)
Q Consensus 266 ~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR~~~~~-~~~-~ 341 (1134)
. .+....... ....+++.++|+||++.. +..+.+...+.....+.++|+||...... ... .
T Consensus 95 ~-~~~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 159 (327)
T 1iqp_A 95 E-KVKEFARTK--------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 159 (327)
T ss_dssp H-HHHHHHHSC--------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred H-HHHHHHhhC--------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHh
Confidence 1 111110000 001256789999999754 44555555444446678899888765321 111 1
Q ss_pred CCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHHHH
Q 001161 342 VDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLGRY 398 (1134)
Q Consensus 342 ~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~ 398 (1134)
....+++.+++.++..+++...+..... .-..+....+++.++|.|..+..+...
T Consensus 160 r~~~~~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 160 RCAIFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHTTTC--EECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCcEEEecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 2247899999999999999887643221 123466788999999999876554443
No 170
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.80 E-value=1.2e-07 Score=106.59 Aligned_cols=257 Identities=16% Similarity=0.158 Sum_probs=150.4
Q ss_pred CCccCCccccchhHHHHHHhhccC---CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTG---STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDL 264 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 264 (1134)
|...+.++|++..++++...+... ....+.|.|+|++|+|||++|+++++.....| .++. . ........+
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-~---~~~~~~~~l 80 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-G---PAIEKPGDL 80 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-T---TTCCSHHHH
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-c---cccCChHHH
Confidence 445678999999999988887531 12335689999999999999999998764322 2221 1 011111111
Q ss_pred HHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH--HHHHHhcCcCCC------------------CCC
Q 001161 265 RQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR--QIKILVGRLDLL------------------ASG 324 (1134)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~l~~l~~~~~~~------------------~~g 324 (1134)
. ..+ ... ..++.+|+||+++... ..+.+...+... .++
T Consensus 81 ~----~~l-----------------~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 81 A----AIL-----------------ANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp H----HHH-----------------TTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred H----HHH-----------------HHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 1 111 000 1356799999997643 233332221110 134
Q ss_pred cEEEEEeCChhhhh-hc--CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHhcC
Q 001161 325 SRIIITTRDRQVLA-NC--GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLGRYLYG 401 (1134)
Q Consensus 325 srIiiTTR~~~~~~-~~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~ 401 (1134)
.++|.||....... .. ....++.+++++.+|..+++...+..... .-..+....++++++|.|-.+..+...+..
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV--RITEEAALEIGRRSRGTMRVAKRLFRRVRD 216 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHSCSCHHHHHHHHHHHTT
T ss_pred EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 56777776543221 11 12357899999999999999887743322 122467788999999999888776655421
Q ss_pred ------C---CHHHHHHHHHHHHcCCCCchhhhhhhhhcCCCHHHHHHHHhhhcccCC--CCHHHHHHHhhhCCCchhcc
Q 001161 402 ------K---RREVWENAISKWETAPPKGIQDALKISYDGLDDKEQNVFLDIACFFID--DDRDTVTKFLDDCEFFATSG 470 (1134)
Q Consensus 402 ------~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~--~~~~~l~~~~~~~~~~~~~~ 470 (1134)
. +.+....++..+ ...+..+++.++..+..++....+ .....+.+.++-........
T Consensus 217 ~a~~~~~~~i~~~~~~~~~~~~------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~ 284 (324)
T 1hqc_A 217 FAQVAGEEVITRERALEALAAL------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEV 284 (324)
T ss_dssp TSTTTSCSCCCHHHHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHh------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHH
Confidence 1 233344333322 233567888888888877655433 34556665553322122232
Q ss_pred hHH-hhccCCeeEecCCe
Q 001161 471 IEV-LVDKHLITISVRNK 487 (1134)
Q Consensus 471 i~~-L~~~sLi~~~~~~~ 487 (1134)
++. +++.++|.....++
T Consensus 285 l~~~~i~~~li~~~~~g~ 302 (324)
T 1hqc_A 285 HEPYLIRQGLLKRTPRGR 302 (324)
T ss_dssp THHHHHHTTSEEEETTEE
T ss_pred HhHHHHHhcchhcCCccc
Confidence 333 78899998774443
No 171
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.80 E-value=8.7e-09 Score=117.18 Aligned_cols=101 Identities=18% Similarity=0.140 Sum_probs=79.9
Q ss_pred eeEecCc-CccccCccccCCCCCCeeeccC-CcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCC
Q 001161 707 TMHLDGT-ALEELPSSIECLSKLSRLDLAD-CKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGT 784 (1134)
Q Consensus 707 ~L~L~~n-~i~~lp~~~~~l~~L~~L~L~~-n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n 784 (1134)
.++++++ .++.+|. +..+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|.+.+..|..|.++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3566666 7888888 88888899999986 7766665577888889999999998888878888888888888888888
Q ss_pred cCcccCccccCCCCCCEEEecCCC
Q 001161 785 AIRELPPSIVRLKSVRAIYFGRNR 808 (1134)
Q Consensus 785 ~i~~lp~~~~~l~~L~~L~l~~n~ 808 (1134)
.|+.+|..+.....|+.|+|.+|.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred ccceeCHHHcccCCceEEEeeCCC
Confidence 888887765544447777777776
No 172
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.74 E-value=1.6e-08 Score=114.90 Aligned_cols=103 Identities=20% Similarity=0.132 Sum_probs=62.9
Q ss_pred EEeecCCCCCCCCCccccCCCCCcEEEccC-CcCcccCc-cccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccC
Q 001161 754 VLNIDGCSNLQRLPEELGYLEALDSLHAVG-TAIRELPP-SIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLND 831 (1134)
Q Consensus 754 ~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~-n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~ 831 (1134)
.++.++++.+..+|. +..+++|+.|+|++ |.|+.+|. .+.++++|+.|+|++|. +....+..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCC
Confidence 346666523445666 77777777777775 77776663 45666666666666665 5555555566666666666666
Q ss_pred CCCCCCccccccccCcceeecCCCCcc
Q 001161 832 CGITELPESLGLLSLVTELHLEGNNFE 858 (1134)
Q Consensus 832 n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 858 (1134)
|+|+.+|..+.....|+.|+|.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCcc
Confidence 666666554332223666666666655
No 173
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.65 E-value=2e-07 Score=104.33 Aligned_cols=187 Identities=11% Similarity=0.103 Sum_probs=115.5
Q ss_pred CCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhc-cCCceeeeeechhHhhcCCHHHHH
Q 001161 187 FQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISR-HFAGSFFARNVREAEETGRLGDLR 265 (1134)
Q Consensus 187 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~ 265 (1134)
.|...++++|++..++.+..++..+. .+.+.++|++|+|||++|+++++.+.. .+...+...+.........+....
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKI 89 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHH
T ss_pred CCCCHHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHH
Confidence 34556779999999999999887543 333899999999999999999987632 221111111110000000111111
Q ss_pred HHHHHHHhcCCCCCCCccccHHHHHHhh-cCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeCChhh-hhh-c
Q 001161 266 QQLLSTLLNDGNVKNFPNIDLNFQSKKL-TRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTRDRQV-LAN-C 340 (1134)
Q Consensus 266 ~~ll~~l~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR~~~~-~~~-~ 340 (1134)
..+.. . ..+ .+++.++|+|+++.. +..+.+...+.....+.++|+||....- ... .
T Consensus 90 ~~~~~----~---------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 150 (319)
T 2chq_A 90 KEFAR----T---------------APIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (319)
T ss_dssp HHHHH----S---------------CCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH
T ss_pred HHHHh----c---------------CCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH
Confidence 11100 0 001 245789999999754 4456666666655677888888876542 111 1
Q ss_pred CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHH
Q 001161 341 GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLG 396 (1134)
Q Consensus 341 ~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 396 (1134)
.....+++.+++.++..+++...+...... -..+....+++.++|.+..+....
T Consensus 151 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp TTCEEEECCCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred hhCeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 233589999999999999998876433221 224567788899999987655443
No 174
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.62 E-value=2.1e-08 Score=113.43 Aligned_cols=160 Identities=16% Similarity=0.179 Sum_probs=96.7
Q ss_pred CccccCCCCCCeeeccCCcC---------CcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcc-
Q 001161 719 PSSIECLSKLSRLDLADCKS---------LKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRE- 788 (1134)
Q Consensus 719 p~~~~~l~~L~~L~L~~n~~---------~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~- 788 (1134)
..++..+++|+.|.+.+... .+.++..+..+|+|+.|.|++|... .++. + .+++|+.|++..+.+..
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDS 208 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChH
Confidence 33455566666666654321 1123333456778888888876322 2333 3 27788888888777652
Q ss_pred cCccc--cCCCCCCEEEecCCCC--CCC--C--ccccc--CCCCCCCEEeccCCCCCC-Ccccc---ccccCcceeecCC
Q 001161 789 LPPSI--VRLKSVRAIYFGRNRG--LSL--P--ITFSV--DGLQNLRDLNLNDCGITE-LPESL---GLLSLVTELHLEG 854 (1134)
Q Consensus 789 lp~~~--~~l~~L~~L~l~~n~~--~~~--~--~~~~~--~~l~~L~~L~Ls~n~l~~-lp~~l---~~l~~L~~L~Ls~ 854 (1134)
....+ ..+++|+.|+|+.+.. ... . ....+ ..+|+|+.|+|++|.+.. .+..+ ..+++|++|+|+.
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 11222 2678888888753210 011 0 00112 357889999998888773 22222 3578899999998
Q ss_pred CCccc-----cccchhCCCCCcEEEeccccCC
Q 001161 855 NNFER-----IPESIIQLSNLEWLFIRYCERL 881 (1134)
Q Consensus 855 n~l~~-----lp~~l~~l~~L~~L~Ls~n~~l 881 (1134)
|.++. ++..+.++++|+.|+|++|.+.
T Consensus 289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 88873 4556677888888888888654
No 175
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.61 E-value=6e-07 Score=101.40 Aligned_cols=257 Identities=15% Similarity=0.179 Sum_probs=149.4
Q ss_pred CCccCCccccchhHHHHHHhhccC---CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTG---STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDL 264 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 264 (1134)
|...++++|++..++++..++... ....+.|.|+|++|+|||++|++++++....|- .+. . ........+
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~---~~~-~---~~~~~~~~~ 97 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIK---TTA-A---PMIEKSGDL 97 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEE---EEE-G---GGCCSHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE---Eec-c---hhccchhHH
Confidence 445678999999999999888652 233456899999999999999999887644331 111 1 000111111
Q ss_pred HHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh--HHHHHHhcCcCCC------------------CCC
Q 001161 265 RQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP--RQIKILVGRLDLL------------------ASG 324 (1134)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~------------------~~g 324 (1134)
.. + + .. ..+..+|+||+++.. .....+...+... .++
T Consensus 98 ~~-~--------------------~-~~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 98 AA-I--------------------L-TN-LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp HH-H--------------------H-HT-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred HH-H--------------------H-Hh-ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 10 0 0 01 235678999999754 2233332221111 123
Q ss_pred cEEEEEeCChhhhh-h--cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHh--
Q 001161 325 SRIIITTRDRQVLA-N--CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLGRYL-- 399 (1134)
Q Consensus 325 srIiiTTR~~~~~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L-- 399 (1134)
.++|.+|....... . ...+..+++++++.++..+++...+-... ..-..+....+++.+.|.|-.+..+...+
T Consensus 155 ~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLLKRVRD 232 (338)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56776666543211 1 12346899999999999999988763222 12235667788889999996655443332
Q ss_pred ----cCC---CHHHHHHHHHHHHcCCCCchhhhhhhhhcCCCHHHHHHHHhhhcccCCC--CHHHHHHHhhhCCCchhcc
Q 001161 400 ----YGK---RREVWENAISKWETAPPKGIQDALKISYDGLDDKEQNVFLDIACFFIDD--DRDTVTKFLDDCEFFATSG 470 (1134)
Q Consensus 400 ----~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~~~~~~~~ 470 (1134)
.+. +.+.....+.. +..+...++..+++.+..++-. .+. ....+...+..........
T Consensus 233 ~a~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~lg~~~~tl~~~ 299 (338)
T 3pfi_A 233 FADVNDEEIITEKRANEALNS------------LGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDV 299 (338)
T ss_dssp HHHHTTCSEECHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHHTTCCHHHHHHT
T ss_pred HHHhhcCCccCHHHHHHHHHH------------hCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHHhCCCHHHHHHH
Confidence 111 23333333332 2334456777767777776665 333 3556666554332223344
Q ss_pred hH-HhhccCCeeEecCCeEE
Q 001161 471 IE-VLVDKHLITISVRNKIK 489 (1134)
Q Consensus 471 i~-~L~~~sLi~~~~~~~~~ 489 (1134)
++ .|++.++|.....+++.
T Consensus 300 l~~~l~~~gli~~~~~g~~~ 319 (338)
T 3pfi_A 300 IEPYLLANGYIERTAKGRIA 319 (338)
T ss_dssp THHHHHHTTSEEEETTEEEE
T ss_pred HhHHHHHcCceecCCCcccc
Confidence 55 78899999887666554
No 176
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.61 E-value=2.3e-08 Score=113.19 Aligned_cols=156 Identities=13% Similarity=0.157 Sum_probs=95.7
Q ss_pred cCccccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCcccc--CCCCCcEEEccC--Cc------Cc
Q 001161 718 LPSSIECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELG--YLEALDSLHAVG--TA------IR 787 (1134)
Q Consensus 718 lp~~~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~--~l~~L~~L~L~~--n~------i~ 787 (1134)
++..+..+++|+.|+|++|... .++. + .+++|++|+|..|.+.......+. .+++|+.|+|+. +. +.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 4444566777777777776322 2333 3 367788888877665433222332 577888887752 11 21
Q ss_pred ccCccc--cCCCCCCEEEecCCCCCCCCccc---ccCCCCCCCEEeccCCCCCC-----CccccccccCcceeecCCCCc
Q 001161 788 ELPPSI--VRLKSVRAIYFGRNRGLSLPITF---SVDGLQNLRDLNLNDCGITE-----LPESLGLLSLVTELHLEGNNF 857 (1134)
Q Consensus 788 ~lp~~~--~~l~~L~~L~l~~n~~~~~~~~~---~~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l 857 (1134)
.+...+ ..+++|+.|+|.+|. +...... ....+++|++|+|+.|.++. ++..+..+++|+.|+|++|.|
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 222222 247889999998776 3221111 12357899999999999884 455667789999999999988
Q ss_pred cc-cccchhC-CCCCcEEEecccc
Q 001161 858 ER-IPESIIQ-LSNLEWLFIRYCE 879 (1134)
Q Consensus 858 ~~-lp~~l~~-l~~L~~L~Ls~n~ 879 (1134)
+. .-..+.. + ...+++++++
T Consensus 320 ~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 320 SDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CHHHHHHHHHHC--CSEEECCSBC
T ss_pred CHHHHHHHHHHc--CCEEEecCCc
Confidence 72 2222332 2 4567777765
No 177
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.59 E-value=3.1e-06 Score=97.69 Aligned_cols=107 Identities=10% Similarity=0.161 Sum_probs=55.2
Q ss_pred cccCCCCCcEEEccCCcCcccCccccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCcc-ccccccCc
Q 001161 769 ELGYLEALDSLHAVGTAIRELPPSIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPE-SLGLLSLV 847 (1134)
Q Consensus 769 ~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L 847 (1134)
.|..+.+|+.+.+.++...--...+.++++|+.+.+..+ +.......|.++.+|+.+.|..+ ++.+.+ +|.++++|
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccceecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 344555555555544332222223445555666555422 23333345556666666666542 444432 45566666
Q ss_pred ceeecCCCCccccc-cchhCCCCCcEEEecccc
Q 001161 848 TELHLEGNNFERIP-ESIIQLSNLEWLFIRYCE 879 (1134)
Q Consensus 848 ~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~ 879 (1134)
+.+.|..+ ++.+. ..|.+|++|+.+++.++.
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 66666433 55554 346666666666666543
No 178
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.57 E-value=5.8e-07 Score=103.12 Aligned_cols=197 Identities=14% Similarity=0.098 Sum_probs=115.3
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQ 267 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 267 (1134)
|...++++|++..++.+...+..+. ..+.+.|+|++|+||||+|+++++.+....... .... ..... ...
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~~~-------~~~~~-~~~ 81 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATPC-------GVCDN-CRE 81 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SSCC-------SSSHH-HHH
T ss_pred CCchhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CCCC-------cccHH-HHH
Confidence 3445679999999999999886543 235789999999999999999998764322100 0000 00000 000
Q ss_pred HHHHHhc-----CCCCCCCccccHHHHHHhh-----cCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeCChh
Q 001161 268 LLSTLLN-----DGNVKNFPNIDLNFQSKKL-----TRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTRDRQ 335 (1134)
Q Consensus 268 ll~~l~~-----~~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR~~~ 335 (1134)
+...... ........ .....+.+.+ .+++.+||+||++.. ...+.+...+.....+..+|++|....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRTKV-EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp HHTSCCSSCEEEETTCSCCS-SCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred HhccCCCceEEecccccCCH-HHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 0000000 00000011 1122333332 245789999999653 345555554444456677777776543
Q ss_pred h-hhh-cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHHH
Q 001161 336 V-LAN-CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLGR 397 (1134)
Q Consensus 336 ~-~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~ 397 (1134)
- ... ......+++.+++.++..+++...+-.... .-..+.+..+++.++|.|..+..+..
T Consensus 161 ~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~--~~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 161 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred hCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 2 111 123368899999999999999876532111 12245677899999999988776543
No 179
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.51 E-value=2.4e-06 Score=96.88 Aligned_cols=202 Identities=16% Similarity=0.131 Sum_probs=114.4
Q ss_pred hhHHHHHHHHHHHHhhccccCCCccCCccccchhHHHHHHhhcc----------CCCCeeEEEEEecCCChHHHHHHHHH
Q 001161 167 TESALIEEIVNAILKRVDDTFQSENEDLVGVRLPMKEIESLLRT----------GSTNVYKLGIWGIGGIGKTTIAGAIF 236 (1134)
Q Consensus 167 ~e~~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~ 236 (1134)
.+..+++.+...+.. ..++...++++|++..+++|.+.+.. .....+.|.|+|++|+|||+||++++
T Consensus 62 ~~~~~~~~i~~~i~~---~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 62 LEPKMIELIMNEIMD---HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp SCHHHHHHHHHHTBC---CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHH
T ss_pred CChHHHHHHHhhccc---CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHH
Confidence 344556655554432 23344567899999999999887742 11335679999999999999999999
Q ss_pred HHHhccCCceeeeeechhHhhcC-C-HHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh------
Q 001161 237 SKISRHFAGSFFARNVREAEETG-R-LGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP------ 308 (1134)
Q Consensus 237 ~~~~~~f~~~~~~~~~~~~~~~~-~-~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~------ 308 (1134)
+.....| +.+ +........ + .....+ ..+...-..++.+|+||+++..
T Consensus 139 ~~~~~~~---~~i-~~~~l~~~~~g~~~~~~~--------------------~~~~~a~~~~~~vl~iDEid~l~~~~~~ 194 (357)
T 3d8b_A 139 SQSGATF---FSI-SASSLTSKWVGEGEKMVR--------------------ALFAVARCQQPAVIFIDEIDSLLSQRGD 194 (357)
T ss_dssp HHTTCEE---EEE-EGGGGCCSSTTHHHHHHH--------------------HHHHHHHHTCSEEEEEETHHHHTBC---
T ss_pred HHcCCeE---EEE-ehHHhhccccchHHHHHH--------------------HHHHHHHhcCCeEEEEeCchhhhccCCC
Confidence 8763322 112 111111100 0 001111 1111122346789999998543
Q ss_pred -------HHHHHHhcCcC----CCCCCcEEEEEeCChhhhhh---cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccH
Q 001161 309 -------RQIKILVGRLD----LLASGSRIIITTRDRQVLAN---CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESH 374 (1134)
Q Consensus 309 -------~~l~~l~~~~~----~~~~gsrIiiTTR~~~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~ 374 (1134)
..+..++..+. ....+..||.||.....+.. ......+.++..+.++..+++...+...... -.
T Consensus 195 ~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~ 272 (357)
T 3d8b_A 195 GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--LS 272 (357)
T ss_dssp ---CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CC
T ss_pred CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--cc
Confidence 11222222221 12334566667765432211 1234578899999999999988776332211 12
Q ss_pred HHHHHHHHHHhcC-ChHHHHHHHH
Q 001161 375 TELACKIIKYARG-VPLALEVLGR 397 (1134)
Q Consensus 375 ~~~~~~i~~~~~G-lPLal~~~g~ 397 (1134)
.+....+++.+.| .+-.+..+..
T Consensus 273 ~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 273 EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4567788888888 4556666554
No 180
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.50 E-value=1.3e-06 Score=95.90 Aligned_cols=183 Identities=18% Similarity=0.227 Sum_probs=104.8
Q ss_pred CCccCCccccchhHHHHHHhhccC-----------CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHh
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTG-----------STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAE 256 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~ 256 (1134)
....++++|++..+++|.+.+... ....+.+.|+|++|+|||+||+++++.....|- .+ ......
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~---~v-~~~~~~ 88 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFI---RV-VGSELV 88 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE---EE-EGGGGC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EE-ehHHHH
Confidence 345678999999999998877431 133456999999999999999999987644331 11 111110
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh----------------HHHHHHhcCcC-
Q 001161 257 ETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP----------------RQIKILVGRLD- 319 (1134)
Q Consensus 257 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~l~~l~~~~~- 319 (1134)
... ...... .....+......++.+|+||+++.. ..+..+...+.
T Consensus 89 ~~~-~~~~~~-----------------~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 150 (285)
T 3h4m_A 89 KKF-IGEGAS-----------------LVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG 150 (285)
T ss_dssp CCS-TTHHHH-----------------HHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHT
T ss_pred Hhc-cchHHH-----------------HHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhC
Confidence 000 000000 0011122222346679999999653 11233332221
Q ss_pred -CCCCCcEEEEEeCChhhhhh-----cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcC-ChHHH
Q 001161 320 -LLASGSRIIITTRDRQVLAN-----CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARG-VPLAL 392 (1134)
Q Consensus 320 -~~~~gsrIiiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~G-lPLal 392 (1134)
....+..||.||.....+.. ......+.++.++.++..+++...+.......+ .....++..+.| .|-.+
T Consensus 151 ~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~i 227 (285)
T 3h4m_A 151 FDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGAEL 227 (285)
T ss_dssp TCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHHHH
T ss_pred CCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHHHH
Confidence 12346678888876544321 123357899999999999999988744322211 113556667766 45444
Q ss_pred HHH
Q 001161 393 EVL 395 (1134)
Q Consensus 393 ~~~ 395 (1134)
..+
T Consensus 228 ~~l 230 (285)
T 3h4m_A 228 KAI 230 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 181
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.49 E-value=9.8e-07 Score=105.34 Aligned_cols=195 Identities=15% Similarity=0.182 Sum_probs=106.5
Q ss_pred CCCccCCccccchhHHHHHHhhccC---------------CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeee
Q 001161 187 FQSENEDLVGVRLPMKEIESLLRTG---------------STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARN 251 (1134)
Q Consensus 187 ~~~~~~~~vGr~~~~~~l~~~L~~~---------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 251 (1134)
.|...++++|++..++++..++... ....+.+.|+|++|+||||+|+++++... +. .+.+.
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~in- 109 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQN- 109 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEEC-
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEe-
Confidence 3455678999999999999998641 01347899999999999999999998772 21 11221
Q ss_pred chhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH-----HHHHHhcCcCCCCCCcE
Q 001161 252 VREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR-----QIKILVGRLDLLASGSR 326 (1134)
Q Consensus 252 ~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-----~l~~l~~~~~~~~~gsr 326 (1134)
.+.... ..+....+.................. ......++.+||+|+++... .+..+...+. ..+.+
T Consensus 110 ---~s~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~ 181 (516)
T 1sxj_A 110 ---ASDVRS-KTLLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTP 181 (516)
T ss_dssp ---TTSCCC-HHHHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSC
T ss_pred ---CCCcch-HHHHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCCC
Confidence 111111 12222222211111110000000000 00123567899999996431 1233322221 12344
Q ss_pred EEEEeCChh---hhhhcCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChH-HHHHH
Q 001161 327 IIITTRDRQ---VLANCGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPL-ALEVL 395 (1134)
Q Consensus 327 IiiTTR~~~---~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 395 (1134)
||+++.+.. +.........+++++++.++..+.+...+....... ..+....|++.++|.+- ++..+
T Consensus 182 iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i--~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 182 LILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKL--DPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHTTTCHHHHHHHH
T ss_pred EEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHHHH
Confidence 666555432 222223345789999999999998887664322111 12456788899999554 44444
No 182
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.48 E-value=9.9e-07 Score=96.83 Aligned_cols=165 Identities=10% Similarity=0.088 Sum_probs=97.6
Q ss_pred CccccchhHHHHHHhhccC--CCCeeEEEEEecCCChHHHHHHHHHHHHhccCC-------ceeeeeechhHhhcCCHHH
Q 001161 193 DLVGVRLPMKEIESLLRTG--STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFA-------GSFFARNVREAEETGRLGD 263 (1134)
Q Consensus 193 ~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-------~~~~~~~~~~~~~~~~~~~ 263 (1134)
.+.||+.+++++...|... ......+.|+|++|.|||++|+++++++..... ..+++.+. .-.+...
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~----~~~t~~~ 96 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL----ELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT----CCC--HH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc----ccCCHHH
Confidence 3889999999998877652 345577899999999999999999998764321 12333221 2234456
Q ss_pred HHHHHHHHHhcCCCCCCCccccHHHHHHhh---cCCcceEEEecCCChHH---HHHHhcCcCCCCCCc--EEEEEeCChh
Q 001161 264 LRQQLLSTLLNDGNVKNFPNIDLNFQSKKL---TRKKVLIVFDDVNHPRQ---IKILVGRLDLLASGS--RIIITTRDRQ 335 (1134)
Q Consensus 264 l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L---~~k~~LlVLDdv~~~~~---l~~l~~~~~~~~~gs--rIiiTTR~~~ 335 (1134)
+...++.++.+..............+.+.+ .++++++|||+++...+ +-.+... .. ...+ .||.++...+
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~-~~-~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKW-IS-SKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHH-HH-CSSCCEEEEEECCSSC
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhc-cc-ccCCcEEEEEEecCcc
Confidence 667777777554322111222223233332 45679999999976532 3333221 00 1233 3334443322
Q ss_pred h----h-----hhcCCCeEEEecCCCHHhHHHHHHHhh
Q 001161 336 V----L-----ANCGVDEVYQMKELVHDDALRLFSRHA 364 (1134)
Q Consensus 336 ~----~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1134)
. + ..++ ...+.+++++.+|-.+++..++
T Consensus 175 ~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 175 TIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred cchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 1 1 1221 2578999999999999998876
No 183
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.47 E-value=1.2e-06 Score=89.78 Aligned_cols=51 Identities=18% Similarity=0.285 Sum_probs=42.5
Q ss_pred CccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 189 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
...+.++||+.+++++.+.+... ..+.+.|+|++|+|||++|+++++.+..
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34567999999999999998653 3456899999999999999999987654
No 184
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.47 E-value=3.7e-07 Score=97.54 Aligned_cols=175 Identities=14% Similarity=0.129 Sum_probs=101.7
Q ss_pred ccCCccccc---hhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHH
Q 001161 190 ENEDLVGVR---LPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQ 266 (1134)
Q Consensus 190 ~~~~~vGr~---~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 266 (1134)
..++|+|.+ ..++.+..+...+ ..+.+.|+|++|+||||+|+++++..........|+.. ...... +
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~-~~~~~~--~----- 95 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL-GIHASI--S----- 95 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG-GGGGGS--C-----
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH-HHHHHH--H-----
Confidence 446788743 4556666665432 45679999999999999999999987655444455432 111100 0
Q ss_pred HHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChHH----HHHHhcCcCCC-CCC-cEEEEEeCChh-----
Q 001161 267 QLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPRQ----IKILVGRLDLL-ASG-SRIIITTRDRQ----- 335 (1134)
Q Consensus 267 ~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~----l~~l~~~~~~~-~~g-srIiiTTR~~~----- 335 (1134)
.... +.+ .++.+||+||++.... .+.+...+... ..+ .++|+||+...
T Consensus 96 ----------------~~~~----~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 96 ----------------TALL----EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp ----------------GGGG----TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred ----------------HHHH----Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 0000 011 3567999999865321 22222211110 122 25788776432
Q ss_pred ----hhhhcCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHHH
Q 001161 336 ----VLANCGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLGR 397 (1134)
Q Consensus 336 ----~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~ 397 (1134)
+...+.....+++++++.++..+++...+..... .-..+....++++++|.+-.+..+..
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 1111112268999999999999999887642221 12246677888999998877665443
No 185
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.45 E-value=4.5e-06 Score=90.92 Aligned_cols=198 Identities=13% Similarity=0.070 Sum_probs=103.6
Q ss_pred CCccccchhHHHHHH-------hhcc-CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHH
Q 001161 192 EDLVGVRLPMKEIES-------LLRT-GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGD 263 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~-------~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 263 (1134)
..++|.+..++++.. .+.. .....+.+.|+|++|+|||++|+++++.....| +.+... ..........
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~-~~~~g~~~~~ 108 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSP-DKMIGFSETA 108 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECG-GGCTTCCHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCH-HHhcCCchHH
Confidence 356777666555544 2221 234567899999999999999999998753322 111111 0000000000
Q ss_pred HHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh------------HHHHHHhcCcC---CCCCCcEEE
Q 001161 264 LRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP------------RQIKILVGRLD---LLASGSRII 328 (1134)
Q Consensus 264 l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~------------~~l~~l~~~~~---~~~~gsrIi 328 (1134)
.... ....+......++.+|+||+++.. ..++.+...+. ..+....||
T Consensus 109 ~~~~-----------------~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 109 KCQA-----------------MKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp HHHH-----------------HHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred HHHH-----------------HHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 0000 011122223356789999998653 12333333222 223345577
Q ss_pred EEeCChhhhhhc---C-CCeEEEecCCCH-HhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCC------hHHHHHHHH
Q 001161 329 ITTRDRQVLANC---G-VDEVYQMKELVH-DDALRLFSRHAFEGDHPHESHTELACKIIKYARGV------PLALEVLGR 397 (1134)
Q Consensus 329 iTTR~~~~~~~~---~-~~~~~~l~~L~~-~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl------PLal~~~g~ 397 (1134)
.||.....+... + ....+++++++. ++..+++.... . . ..+....+++.+.|. .-++.++-.
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~-~---~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~ 244 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---N-F---KDKERTTIAQQVKGKKVWIGIKKLLMLIEM 244 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---C-S---CHHHHHHHHHHHTTSEEEECHHHHHHHHHH
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---C-C---CHHHHHHHHHHhcCCCccccHHHHHHHHHH
Confidence 788877554431 1 246788999988 55555555421 1 1 145567788888873 333333333
Q ss_pred HhcCCCHHHHHHHHHHHHcC
Q 001161 398 YLYGKRREVWENAISKWETA 417 (1134)
Q Consensus 398 ~L~~~~~~~w~~~l~~l~~~ 417 (1134)
.........++..+..+...
T Consensus 245 a~~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 245 SLQMDPEYRVRKFLALLREE 264 (272)
T ss_dssp HTTSCGGGHHHHHHHHHHHT
T ss_pred HhhhchHHHHHHHHHHHHHc
Confidence 32223445566666655443
No 186
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.44 E-value=1.1e-05 Score=92.98 Aligned_cols=102 Identities=15% Similarity=0.137 Sum_probs=56.7
Q ss_pred cccCCCCCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCcc-ccccccCcceeecCCCCccccc-cchhCCCC
Q 001161 792 SIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPE-SLGLLSLVTELHLEGNNFERIP-ESIIQLSN 869 (1134)
Q Consensus 792 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~ 869 (1134)
.+.++.+|+.+.+..+. .......|.++++|+.+.+. +.++.++. .|.++++|+.+.|..+ ++.|. ..|.+|.+
T Consensus 260 aF~~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred eeeecccccEEeccccc--ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 34556666666665432 22233455666677777664 34555543 4566667777776543 55554 35666677
Q ss_pred CcEEEeccccCCCccCC----cCCCcCeEeccCC
Q 001161 870 LEWLFIRYCERLQSLPK----LPCNLIWLDAHHC 899 (1134)
Q Consensus 870 L~~L~Ls~n~~l~~lp~----~~~~L~~L~l~~c 899 (1134)
|+.+.|..+ +..++. ...+|+.+++.++
T Consensus 336 L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 336 LERIAIPSS--VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CCEEEECTT--CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCEEEECcc--cCEEhHhHhhCCCCCCEEEECCc
Confidence 777776543 333332 2345666666554
No 187
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.43 E-value=7.4e-06 Score=91.54 Aligned_cols=184 Identities=13% Similarity=0.086 Sum_probs=107.0
Q ss_pred CCCccCCccccchhHHHHHHhhc----------cCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHh
Q 001161 187 FQSENEDLVGVRLPMKEIESLLR----------TGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAE 256 (1134)
Q Consensus 187 ~~~~~~~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~ 256 (1134)
+....++++|.+..+++|.+.+. ......+-|.|+|++|+|||+||+++++.....| +..+.....
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~ 88 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDLV 88 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE----EEEEHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE----EEEchHHHh
Confidence 34456789999999999988772 1222345799999999999999999998764433 111111110
Q ss_pred hcC--CHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH-------------HHHHHhcCc---
Q 001161 257 ETG--RLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR-------------QIKILVGRL--- 318 (1134)
Q Consensus 257 ~~~--~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-------------~l~~l~~~~--- 318 (1134)
... ......+ ..+...-..++.+|+||+++... ....+...+
T Consensus 89 ~~~~g~~~~~~~--------------------~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 148 (322)
T 3eie_A 89 SKWMGESEKLVK--------------------QLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGV 148 (322)
T ss_dssp TTTGGGHHHHHH--------------------HHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGG
T ss_pred hcccchHHHHHH--------------------HHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccc
Confidence 000 0011111 11112223466899999997431 122232222
Q ss_pred CCCCCCcEEEEEeCChhhhhh---cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCC-hHHHHH
Q 001161 319 DLLASGSRIIITTRDRQVLAN---CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGV-PLALEV 394 (1134)
Q Consensus 319 ~~~~~gsrIiiTTR~~~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~ 394 (1134)
.....+..||.||.....+.. ......+.++..+.++..+++..++.+.... ........+++.+.|. +-.|..
T Consensus 149 ~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~l~~la~~t~g~sg~di~~ 226 (322)
T 3eie_A 149 GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCV--LTKEDYRTLGAMTEGYSGSDIAV 226 (322)
T ss_dssp GTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC--CCHHHHHHHHHTTTTCCHHHHHH
T ss_pred cccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCC--CCHHHHHHHHHHcCCCCHHHHHH
Confidence 122455667767776533211 1235678899999999999999887433221 1234567788888774 545554
Q ss_pred HH
Q 001161 395 LG 396 (1134)
Q Consensus 395 ~g 396 (1134)
+.
T Consensus 227 l~ 228 (322)
T 3eie_A 227 VV 228 (322)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 188
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.37 E-value=1.3e-06 Score=101.73 Aligned_cols=183 Identities=15% Similarity=0.145 Sum_probs=105.3
Q ss_pred cCCcc-ccchhH--HHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCce--eeeeechhHhhcCCHHHHH
Q 001161 191 NEDLV-GVRLPM--KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGS--FFARNVREAEETGRLGDLR 265 (1134)
Q Consensus 191 ~~~~v-Gr~~~~--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~--~~~~~~~~~~~~~~~~~l~ 265 (1134)
.+.|| |....+ ..+......... ...+.|+|++|+||||||+++++.+...++.. +++.. ..+.
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~----------~~~~ 172 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS----------EKFL 172 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH----------HHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH----------HHHH
Confidence 45566 655443 333333333222 56799999999999999999999887665433 33321 1122
Q ss_pred HHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH----HHHHHhcCcCC-CCCCcEEEEEeCCh------
Q 001161 266 QQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR----QIKILVGRLDL-LASGSRIIITTRDR------ 334 (1134)
Q Consensus 266 ~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----~l~~l~~~~~~-~~~gsrIiiTTR~~------ 334 (1134)
.++...+... ....+.+.++.++-+|+|||++... ..+.+...+.. ...|..||+||...
T Consensus 173 ~~~~~~~~~~---------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~ 243 (440)
T 2z4s_A 173 NDLVDSMKEG---------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSE 243 (440)
T ss_dssp HHHHHHHHTT---------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSS
T ss_pred HHHHHHHHcc---------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHH
Confidence 3333333221 1233344444467899999995432 22333222211 14577888888763
Q ss_pred ---hhhhhcCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHH
Q 001161 335 ---QVLANCGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVL 395 (1134)
Q Consensus 335 ---~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 395 (1134)
.+...+....++.+++++.++..+++...+...... -..+....|++.++|.+-.+.-+
T Consensus 244 l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~--i~~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 244 FQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGE--LPEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp CCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCC--CCTTHHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHHHH
Confidence 122222223567899999999999998876321111 11244667888888888655433
No 189
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.37 E-value=3.6e-05 Score=88.24 Aligned_cols=126 Identities=12% Similarity=0.105 Sum_probs=70.0
Q ss_pred cCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCc-cccCCCCCCEEEecCCCCCCCCcccccCCCCCC
Q 001161 746 LCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPP-SIVRLKSVRAIYFGRNRGLSLPITFSVDGLQNL 824 (1134)
Q Consensus 746 l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 824 (1134)
+..+.+|+.+.+..+ +.......+..+.+|+.+.+..+ ++.+.. .+.++.+|+.+.+..+ +.......|.++++|
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceecccccccccccc
Confidence 444555555555432 22222234445555666655443 333332 3445566666666532 233333456677777
Q ss_pred CEEeccCCCCCCCcc-ccccccCcceeecCCCCccccc-cchhCCCCCcEEEec
Q 001161 825 RDLNLNDCGITELPE-SLGLLSLVTELHLEGNNFERIP-ESIIQLSNLEWLFIR 876 (1134)
Q Consensus 825 ~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls 876 (1134)
+.+.+.++.++.+++ +|.++++|+.+.|..+ ++.|. ..|.+|++|+.+.+.
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 777777777776643 5667777777777543 66665 356677777766654
No 190
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.35 E-value=3.9e-06 Score=95.27 Aligned_cols=198 Identities=11% Similarity=0.091 Sum_probs=113.4
Q ss_pred CCCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc--CCceeeeeechhHhhcCCHHHH
Q 001161 187 FQSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH--FAGSFFARNVREAEETGRLGDL 264 (1134)
Q Consensus 187 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l 264 (1134)
.|....+++|++..++.+...+..+.. ..+.|+|++|+||||+|+++++.+... +...+.-.+ .+...+...+
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~---~~~~~~~~~~ 106 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN---ASDERGISIV 106 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC---SSSCCCHHHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc---cccccchHHH
Confidence 345567899999999999999875432 238999999999999999999876421 221111111 1111222222
Q ss_pred HHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeCChh-hhhhc-
Q 001161 265 RQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTRDRQ-VLANC- 340 (1134)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR~~~-~~~~~- 340 (1134)
.+ ............ .... .....-..++-+|++|+++.. .....+...+.......++|++|.... +....
T Consensus 107 ~~-~~~~~~~~~~~~-~~~~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~ 181 (353)
T 1sxj_D 107 RE-KVKNFARLTVSK-PSKH---DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA 181 (353)
T ss_dssp TT-HHHHHHHSCCCC-CCTT---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HH-HHHHHhhhcccc-cchh---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhh
Confidence 21 111111110000 0000 001111235569999998653 333444443333345677877775543 21111
Q ss_pred CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHH
Q 001161 341 GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLG 396 (1134)
Q Consensus 341 ~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 396 (1134)
.....+++.+++.++..+.+...+...... -..+....++++++|.|-.+..+.
T Consensus 182 sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 182 SQCSKFRFKALDASNAIDRLRFISEQENVK--CDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp HHSEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred ccCceEEeCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 112478999999999999998876432211 225677889999999998755443
No 191
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.31 E-value=2.4e-06 Score=97.17 Aligned_cols=201 Identities=12% Similarity=0.053 Sum_probs=108.7
Q ss_pred cCCCccCCccccchhHHHHHHhh-ccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeech-----------
Q 001161 186 TFQSENEDLVGVRLPMKEIESLL-RTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVR----------- 253 (1134)
Q Consensus 186 ~~~~~~~~~vGr~~~~~~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~----------- 253 (1134)
..|...++++|.+..++.+..++ ..+.. .. +.|+|+.|+||||+|+.++..+...-.+.+++....
T Consensus 8 yrP~~~~~~vg~~~~~~~l~~~~~~~~~~-~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~ 85 (354)
T 1sxj_E 8 YRPKSLNALSHNEELTNFLKSLSDQPRDL-PH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLEL 85 (354)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTTTCTTCC-CC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHhhCCCC-Ce-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccccccee
Confidence 34556678999999999999988 54322 23 899999999999999999986532222221111000
Q ss_pred -----------hHhhc-CCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH--HHHHHhcCcC
Q 001161 254 -----------EAEET-GRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR--QIKILVGRLD 319 (1134)
Q Consensus 254 -----------~~~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~l~~l~~~~~ 319 (1134)
..+.. .......++++..+......... . .+ ..+..++-++|||+++..+ ..+.+...+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le 159 (354)
T 1sxj_E 86 NVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQ----D-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTME 159 (354)
T ss_dssp CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHH
T ss_pred eeecccceEEecHhhcCCcchHHHHHHHHHHHHhcccccc----c-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHH
Confidence 00000 00000112222222111000000 0 00 0023356699999997643 2333443333
Q ss_pred CCCCCcEEEEEeCChh-hhhhc-CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccH-HHHHHHHHHHhcCChHHHHHHH
Q 001161 320 LLASGSRIIITTRDRQ-VLANC-GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESH-TELACKIIKYARGVPLALEVLG 396 (1134)
Q Consensus 320 ~~~~gsrIiiTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~-~~~~~~i~~~~~GlPLal~~~g 396 (1134)
...++.++|++|.+.. +.... .....+++.+++.++..+.+...+..... .-. .+.+..+++.++|.+-.+..+.
T Consensus 160 ~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 160 KYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI--QLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp HSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--EECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 3345678888876643 22211 22368899999999999999877632211 111 3566788899999886655443
No 192
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.30 E-value=1.8e-05 Score=89.50 Aligned_cols=183 Identities=13% Similarity=0.073 Sum_probs=104.3
Q ss_pred CccCCccccchhHHHHHHhhcc----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhc
Q 001161 189 SENEDLVGVRLPMKEIESLLRT----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEET 258 (1134)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 258 (1134)
...++++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+++++.....| +..+.......
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~----~~v~~~~l~~~ 123 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDLVSK 123 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE----EEEEHHHHHSC
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEeeHHHHhhh
Confidence 4456799999999999887631 112234589999999999999999998874332 21111111000
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCccccHHHHH-HhhcCCcceEEEecCCChH-------------HHHHHhcCcC---CC
Q 001161 259 GRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQS-KKLTRKKVLIVFDDVNHPR-------------QIKILVGRLD---LL 321 (1134)
Q Consensus 259 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~-~~L~~k~~LlVLDdv~~~~-------------~l~~l~~~~~---~~ 321 (1134)
. . ...+.....+. .....++.+|+||+++... ....++..+. ..
T Consensus 124 ~------------------~-g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~ 184 (355)
T 2qp9_X 124 W------------------M-GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND 184 (355)
T ss_dssp C----------------------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC--
T ss_pred h------------------c-chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc
Confidence 0 0 00111111111 2223567899999997532 1222322221 12
Q ss_pred CCCcEEEEEeCChhhhhh---cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCC-hHHHHHHH
Q 001161 322 ASGSRIIITTRDRQVLAN---CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGV-PLALEVLG 396 (1134)
Q Consensus 322 ~~gsrIiiTTR~~~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~g 396 (1134)
..+..||.||.....+.. ...+..+.++..+.++..+++..++.+... .........|++.+.|. +-.|..+.
T Consensus 185 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 185 SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS--VLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp -CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB--CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345566667765432111 134567889999999999999887743221 11234567788888884 54555544
No 193
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.29 E-value=1.4e-05 Score=88.95 Aligned_cols=184 Identities=12% Similarity=0.077 Sum_probs=103.9
Q ss_pred CccCCccccchhHHHHHHhhcc----------CCCCeeEEEEEecCCChHHHHHHHHHHHH-hccCCceeeeeechhHhh
Q 001161 189 SENEDLVGVRLPMKEIESLLRT----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKI-SRHFAGSFFARNVREAEE 257 (1134)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~-~~~f~~~~~~~~~~~~~~ 257 (1134)
..-++++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+++++.. ...| +.+ +......
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i-~~~~l~~ 84 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSI-SSSDLVS 84 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEE-ECCSSCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcE---EEE-EhHHHHh
Confidence 3456788888888888766531 11234679999999999999999999876 2222 111 1100000
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCccccHHHHH-HhhcCCcceEEEecCCChH-------------HHHHHhcCcCC---
Q 001161 258 TGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQS-KKLTRKKVLIVFDDVNHPR-------------QIKILVGRLDL--- 320 (1134)
Q Consensus 258 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~-~~L~~k~~LlVLDdv~~~~-------------~l~~l~~~~~~--- 320 (1134)
. .. ...+.....+. ..-..++.+|+||+++... ....+...+..
T Consensus 85 ~------------------~~-g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 145 (322)
T 1xwi_A 85 K------------------WL-GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV 145 (322)
T ss_dssp S------------------SC-CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS
T ss_pred h------------------hh-hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccc
Confidence 0 00 00111111111 2223567899999997651 12223222221
Q ss_pred CCCCcEEEEEeCChhhhhh---cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCC-hHHHHHHH
Q 001161 321 LASGSRIIITTRDRQVLAN---CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGV-PLALEVLG 396 (1134)
Q Consensus 321 ~~~gsrIiiTTR~~~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~g 396 (1134)
...+..||.||.....+.. ...+..+.++..+.++..+++..+..+... .........+++.+.|. +-.|..+.
T Consensus 146 ~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 146 DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN--SLTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp CCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB--CCCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred cCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 2345556667754432211 134567899999999999999887733221 11235567888888887 44455554
Q ss_pred H
Q 001161 397 R 397 (1134)
Q Consensus 397 ~ 397 (1134)
.
T Consensus 224 ~ 224 (322)
T 1xwi_A 224 R 224 (322)
T ss_dssp H
T ss_pred H
Confidence 3
No 194
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.27 E-value=5.2e-06 Score=89.86 Aligned_cols=183 Identities=14% Similarity=0.129 Sum_probs=99.5
Q ss_pred cCCccccchhHHHHHHhhcc---C-------CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCC
Q 001161 191 NEDLVGVRLPMKEIESLLRT---G-------STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGR 260 (1134)
Q Consensus 191 ~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 260 (1134)
.++++|.+..++++.+++.. . ....+.|.|+|++|+|||++|+++++.....| +.+ +.........
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~-~~~~~~~~~~ 80 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAM-AGAEFVEVIG 80 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEE-ETTTTSSSST
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEe-chHHHHhhcc
Confidence 45688888888777665431 1 12345688999999999999999998764332 111 1111100000
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh-----------------HHHHHHhcCcCCC--
Q 001161 261 LGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP-----------------RQIKILVGRLDLL-- 321 (1134)
Q Consensus 261 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-----------------~~l~~l~~~~~~~-- 321 (1134)
-. .. ......+.......+.+|+||+++.. ..+..+...+...
T Consensus 81 ~~--~~----------------~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 81 GL--GA----------------ARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp TH--HH----------------HHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred Ch--hH----------------HHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 00 00 00011122222345789999999764 1123333322211
Q ss_pred CCCcEEEEEeCChhhhhh-c----CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChH-HHHHH
Q 001161 322 ASGSRIIITTRDRQVLAN-C----GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPL-ALEVL 395 (1134)
Q Consensus 322 ~~gsrIiiTTR~~~~~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 395 (1134)
..+..||.||.....+.. . ..+..+.++..+.++..+++..++..... ..........+++.+.|.+- .|..+
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 235567777766543221 1 23467889999999999999887643222 11222234677888887653 44444
Q ss_pred H
Q 001161 396 G 396 (1134)
Q Consensus 396 g 396 (1134)
.
T Consensus 222 ~ 222 (262)
T 2qz4_A 222 C 222 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 195
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.27 E-value=7e-06 Score=93.82 Aligned_cols=199 Identities=14% Similarity=0.067 Sum_probs=106.0
Q ss_pred cCCccccchhHHHHH---HhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHH
Q 001161 191 NEDLVGVRLPMKEIE---SLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQ 267 (1134)
Q Consensus 191 ~~~~vGr~~~~~~l~---~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 267 (1134)
.+.+||++..++.+. ..+..+....+.+.|+|++|+|||++|+++++.+....+.. .+....-.+..........+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFT-AIAGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEE-EEEGGGGSCSSSCHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcc-cccchhhhhcccchhHHHHH
Confidence 568999999877744 44444433346899999999999999999999876432211 11111111111222222222
Q ss_pred HHHHHhcC---------------------CC----C-CC----CccccHHHHHHhh-----cCC----cceEEEecCCCh
Q 001161 268 LLSTLLND---------------------GN----V-KN----FPNIDLNFQSKKL-----TRK----KVLIVFDDVNHP 308 (1134)
Q Consensus 268 ll~~l~~~---------------------~~----~-~~----~~~~~~~~l~~~L-----~~k----~~LlVLDdv~~~ 308 (1134)
.+...... .. . .. ........+.+.. .++ +.+|+||+++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 22221100 00 0 00 0111111111111 122 459999999764
Q ss_pred --HHHHHHhcCcCCCCCCcEEEEEeCC-----------------hhhhhhcCCCeEEEecCCCHHhHHHHHHHhhcCCCC
Q 001161 309 --RQIKILVGRLDLLASGSRIIITTRD-----------------RQVLANCGVDEVYQMKELVHDDALRLFSRHAFEGDH 369 (1134)
Q Consensus 309 --~~l~~l~~~~~~~~~gsrIiiTTR~-----------------~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~ 369 (1134)
+....+...+...... .++++|.. +.+.. ....+.+++++.++..+++...+-....
T Consensus 202 ~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s---R~~~i~~~~~~~~e~~~il~~~~~~~~~ 277 (368)
T 3uk6_A 202 DIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD---RLLIVSTTPYSEKDTKQILRIRCEEEDV 277 (368)
T ss_dssp BHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT---TEEEEEECCCCHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHh---hccEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 3344455444433333 34444431 11222 2245799999999999999987643222
Q ss_pred CCccHHHHHHHHHHHhc-CChHHHHHHH
Q 001161 370 PHESHTELACKIIKYAR-GVPLALEVLG 396 (1134)
Q Consensus 370 ~~~~~~~~~~~i~~~~~-GlPLal~~~g 396 (1134)
.-..+....+++++. |.|-.+..+.
T Consensus 278 --~~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 278 --EMSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp --CBCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred --CCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 223566778888988 8876655443
No 196
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.26 E-value=5.5e-06 Score=91.58 Aligned_cols=196 Identities=17% Similarity=0.166 Sum_probs=108.7
Q ss_pred HHHHHHhhccc-cCCCccCCccccchhHHHHHHhhccC----------CCCeeEEEEEecCCChHHHHHHHHHHHHhccC
Q 001161 175 IVNAILKRVDD-TFQSENEDLVGVRLPMKEIESLLRTG----------STNVYKLGIWGIGGIGKTTIAGAIFSKISRHF 243 (1134)
Q Consensus 175 i~~~v~~~l~~-~~~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1134)
+++.+.+.+.. .++...++++|.+..++.+.+.+... ....+.+.|+|++|+||||+|++++......|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~ 82 (297)
T 3b9p_A 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF 82 (297)
T ss_dssp HHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 44455544433 33445678999999999998876321 12346799999999999999999998764332
Q ss_pred CceeeeeechhHhhc--CCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh-------------
Q 001161 244 AGSFFARNVREAEET--GRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP------------- 308 (1134)
Q Consensus 244 ~~~~~~~~~~~~~~~--~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~------------- 308 (1134)
- .+ +....... .......+. .+......++.+|+||+++..
T Consensus 83 ~---~i-~~~~l~~~~~~~~~~~~~~--------------------~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~ 138 (297)
T 3b9p_A 83 L---NI-SAASLTSKYVGDGEKLVRA--------------------LFAVARHMQPSIIFIDEVDSLLSERSSSEHEASR 138 (297)
T ss_dssp E---EE-ESTTTSSSSCSCHHHHHHH--------------------HHHHHHHTCSEEEEEETGGGTSBCC-----CCSH
T ss_pred E---Ee-eHHHHhhcccchHHHHHHH--------------------HHHHHHHcCCcEEEeccHHHhccccccCcchHHH
Confidence 1 11 11010000 001111111 111122346789999998643
Q ss_pred HHHHHHhcCc---CC--CCCCcEEEEEeCChhhhhh---cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHH
Q 001161 309 RQIKILVGRL---DL--LASGSRIIITTRDRQVLAN---CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACK 380 (1134)
Q Consensus 309 ~~l~~l~~~~---~~--~~~gsrIiiTTR~~~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~ 380 (1134)
.....+...+ .. .+.+..||.||.....+.. ......+.++..+.++..+++...+-..... -..+....
T Consensus 139 ~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~ 216 (297)
T 3b9p_A 139 RLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP--LDTEALRR 216 (297)
T ss_dssp HHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC--SCHHHHHH
T ss_pred HHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHH
Confidence 1111222111 11 1234567777776432111 0234677888888888888888766332211 12355678
Q ss_pred HHHHhcCChH-HHHHHH
Q 001161 381 IIKYARGVPL-ALEVLG 396 (1134)
Q Consensus 381 i~~~~~GlPL-al~~~g 396 (1134)
+++.+.|.+- ++..+.
T Consensus 217 la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 217 LAKITDGYSGSDLTALA 233 (297)
T ss_dssp HHHHTTTCCHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHH
Confidence 8888988875 555444
No 197
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.26 E-value=9.3e-06 Score=90.94 Aligned_cols=179 Identities=13% Similarity=0.142 Sum_probs=98.7
Q ss_pred ccCCcc-ccchh--HHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHH
Q 001161 190 ENEDLV-GVRLP--MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQ 266 (1134)
Q Consensus 190 ~~~~~v-Gr~~~--~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 266 (1134)
..+.|| |.... ...+.............+.|+|++|+||||||+++++.....-...+++.. ..+..
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~----------~~~~~ 78 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA----------DDFAQ 78 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH----------HHHHH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH----------HHHHH
Confidence 345666 54332 334445444333345678999999999999999999977554222333321 11222
Q ss_pred HHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH----HHHHHhcCcCC-CCCCcEEEEEeCCh-------
Q 001161 267 QLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR----QIKILVGRLDL-LASGSRIIITTRDR------- 334 (1134)
Q Consensus 267 ~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----~l~~l~~~~~~-~~~gsrIiiTTR~~------- 334 (1134)
.+...+... ....+.+.+. ++.+|+|||++... ..+.+...+.. ...|.+||+||...
T Consensus 79 ~~~~~~~~~---------~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l 148 (324)
T 1l8q_A 79 AMVEHLKKG---------TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGV 148 (324)
T ss_dssp HHHHHHHHT---------CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTS
T ss_pred HHHHHHHcC---------cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHh
Confidence 232222211 1222233332 46799999996532 12222222111 13456788887643
Q ss_pred --hhhhhcCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHH
Q 001161 335 --QVLANCGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLAL 392 (1134)
Q Consensus 335 --~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 392 (1134)
.+...+....++++++ +.++..+++...+..... .-..+....+++++ |..-.+
T Consensus 149 ~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~--~l~~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 149 SDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL--ELRKEVIDYLLENT-KNVREI 204 (324)
T ss_dssp CHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHC-SSHHHH
T ss_pred hhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhC-CCHHHH
Confidence 1122222335789999 999999999887743221 11245667788888 776543
No 198
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.22 E-value=9.2e-06 Score=94.43 Aligned_cols=180 Identities=16% Similarity=0.206 Sum_probs=106.0
Q ss_pred CCccCCccccchhH---HHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHH
Q 001161 188 QSENEDLVGVRLPM---KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDL 264 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 264 (1134)
|...+++||.+..+ ..+...+..+ ..+.+.|+|++|+||||+|+.+++.....|.... ....+...+
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~--------a~~~~~~~i 91 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVERIS--------AVTSGVKEI 91 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE--------TTTCCHHHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE--------eccCCHHHH
Confidence 45567899999888 6777777644 3467999999999999999999988754442111 111223222
Q ss_pred HHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH--HHHHHhcCcCCCCCCcEEEE-EeCChh--hhh-
Q 001161 265 RQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR--QIKILVGRLDLLASGSRIII-TTRDRQ--VLA- 338 (1134)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIii-TTR~~~--~~~- 338 (1134)
.. ++... .......++.+|+||+++... +.+.|...+.. ....+|. ||.+.. +..
T Consensus 92 r~-~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 92 RE-AIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSA 152 (447)
T ss_dssp HH-HHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHH
T ss_pred HH-HHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHH
Confidence 21 11110 011124567899999997653 23333333221 2234444 554442 111
Q ss_pred hcCCCeEEEecCCCHHhHHHHHHHhhcCCC-----CCCccHHHHHHHHHHHhcCChHHHHHHH
Q 001161 339 NCGVDEVYQMKELVHDDALRLFSRHAFEGD-----HPHESHTELACKIIKYARGVPLALEVLG 396 (1134)
Q Consensus 339 ~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~-----~~~~~~~~~~~~i~~~~~GlPLal~~~g 396 (1134)
......++.+.+++.++..+++.+.+-... ....-..+....++++++|.+-.+.-+.
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 112335889999999999999988764311 1112235667788899999887655433
No 199
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.20 E-value=1.5e-05 Score=91.72 Aligned_cols=185 Identities=14% Similarity=0.110 Sum_probs=102.8
Q ss_pred CCCccCCccccchhHHHHHHhhcc----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHh
Q 001161 187 FQSENEDLVGVRLPMKEIESLLRT----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAE 256 (1134)
Q Consensus 187 ~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~ 256 (1134)
.+...++++|.+..++.+.+.+.. .....+-|.|+|++|+|||+||++++++....| +..+.....
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~ 185 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF----FNISAASLT 185 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE----EEECSCCC-
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE----EEeeHHHhh
Confidence 344567899999999999887732 112246799999999999999999988754332 211110000
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCccccHHH-HHHhhcCCcceEEEecCCCh-------------HHHHHHhcCc----
Q 001161 257 ETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNF-QSKKLTRKKVLIVFDDVNHP-------------RQIKILVGRL---- 318 (1134)
Q Consensus 257 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~-l~~~L~~k~~LlVLDdv~~~-------------~~l~~l~~~~---- 318 (1134)
... . ......... +...-..++.+|+||+++.. .....+...+
T Consensus 186 ~~~---------~----------g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 246 (389)
T 3vfd_A 186 SKY---------V----------GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQ 246 (389)
T ss_dssp -------------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC
T ss_pred ccc---------c----------chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccc
Confidence 000 0 000001111 11122345679999999754 0111222111
Q ss_pred CCCCCCcEEEEEeCChhhhhh---cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChH-HHHH
Q 001161 319 DLLASGSRIIITTRDRQVLAN---CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPL-ALEV 394 (1134)
Q Consensus 319 ~~~~~gsrIiiTTR~~~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~ 394 (1134)
.......+||.||.....+.. ......+.++..+.++..+++...+-..... -..+....+++.+.|..- ++..
T Consensus 247 ~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~~~~la~~~~g~~~~~l~~ 324 (389)
T 3vfd_A 247 SAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP--LTQKELAQLARMTDGYSGSDLTA 324 (389)
T ss_dssp -----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC--SCHHHHHHHHHHTTTCCHHHHHH
T ss_pred ccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHH
Confidence 111234556667765432211 1234578899999999999998877432222 123466788888888543 5555
Q ss_pred HH
Q 001161 395 LG 396 (1134)
Q Consensus 395 ~g 396 (1134)
+.
T Consensus 325 L~ 326 (389)
T 3vfd_A 325 LA 326 (389)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 200
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.18 E-value=1.3e-05 Score=89.20 Aligned_cols=149 Identities=12% Similarity=0.144 Sum_probs=87.6
Q ss_pred CccccchhHHHHHHhhcc-------------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCC--ceeeee-echhHh
Q 001161 193 DLVGVRLPMKEIESLLRT-------------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFA--GSFFAR-NVREAE 256 (1134)
Q Consensus 193 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~-~~~~~~ 256 (1134)
.++|.+..++.+.+.+.. .......+.|+|++|+|||++|+++++.+..... ..-++. +.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 478888888887765532 1234457999999999999999999987654321 111221 110000
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhc-CCcceEEEecCC-----------ChHHHHHHhcCcCCCCCC
Q 001161 257 ETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLT-RKKVLIVFDDVN-----------HPRQIKILVGRLDLLASG 324 (1134)
Q Consensus 257 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~-~k~~LlVLDdv~-----------~~~~l~~l~~~~~~~~~g 324 (1134)
. . .. ... ...+...+. .+.-+|+||+++ ..+.+..|...+.....+
T Consensus 112 ~-----------------~-~~-g~~---~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 169 (309)
T 3syl_A 112 G-----------------Q-YI-GHT---APKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD 169 (309)
T ss_dssp C-----------------S-ST-TCH---HHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT
T ss_pred h-----------------h-cc-ccc---HHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC
Confidence 0 0 00 000 011111111 134699999997 334455555544444566
Q ss_pred cEEEEEeCChh----------hhhhcCCCeEEEecCCCHHhHHHHHHHhhc
Q 001161 325 SRIIITTRDRQ----------VLANCGVDEVYQMKELVHDDALRLFSRHAF 365 (1134)
Q Consensus 325 srIiiTTR~~~----------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af 365 (1134)
..||.||.... +... ....+++++++.++..+++...+.
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 170 LVVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp CEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHH
Confidence 78888886432 2222 236889999999999999988763
No 201
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.18 E-value=7.3e-05 Score=85.63 Aligned_cols=127 Identities=9% Similarity=0.072 Sum_probs=55.6
Q ss_pred ccCCCCCCeeeccCCcCCcccCcccCCCCCCcEEeecCCCCCCCCCccccCCCCCcEEEccCCcCcccCc-cccCCCCCC
Q 001161 722 IECLSKLSRLDLADCKSLKSLPSGLCKLKSLDVLNIDGCSNLQRLPEELGYLEALDSLHAVGTAIRELPP-SIVRLKSVR 800 (1134)
Q Consensus 722 ~~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~-~~~~l~~L~ 800 (1134)
+..+.+|+.+.+..+ +...-...+.++.+|+.+.+..+ +...-...+.++.+|+.+.+..+ +..++. .+.++++|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 334444555544432 12222233445555555555432 22222233444555555555332 333332 234455555
Q ss_pred EEEecCCCCCCCCcccccCCCCCCCEEeccCCCCCCCcc-ccccccCcceeecC
Q 001161 801 AIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCGITELPE-SLGLLSLVTELHLE 853 (1134)
Q Consensus 801 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls 853 (1134)
.+.+.++. +.......|.++.+|+.+.|..+ ++.|.. +|.++++|+.+.+.
T Consensus 290 ~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 290 KVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccc-cceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 55554443 33333344555555555555432 444432 44555555555553
No 202
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.17 E-value=9.9e-06 Score=82.32 Aligned_cols=50 Identities=20% Similarity=0.287 Sum_probs=42.0
Q ss_pred ccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 190 ENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
..+.++||+.+++.+.+.+... ..+.+.|+|++|+|||++|+++++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4567999999999999988653 3456799999999999999999987754
No 203
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.16 E-value=3.3e-05 Score=90.13 Aligned_cols=185 Identities=14% Similarity=0.142 Sum_probs=107.8
Q ss_pred CCccCCccccchhHHHHHHhhcc----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhh
Q 001161 188 QSENEDLVGVRLPMKEIESLLRT----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEE 257 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 257 (1134)
+...++++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+++++.... ..++..+...
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~---~~~~~v~~~~--- 203 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSD--- 203 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS---SEEEEECCC----
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC---CCEEEEeHHH---
Confidence 34567899999999999877631 1123467999999999999999999987611 1111111100
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHH-hhcCCcceEEEecCCCh-------------HHHHHHhcCcCCC--
Q 001161 258 TGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSK-KLTRKKVLIVFDDVNHP-------------RQIKILVGRLDLL-- 321 (1134)
Q Consensus 258 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVLDdv~~~-------------~~l~~l~~~~~~~-- 321 (1134)
+. ....+. .+.....+.+ .-..++.+|+||+++.. .....+...+...
T Consensus 204 ------l~----~~~~g~------~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 267 (444)
T 2zan_A 204 ------LV----SKWLGE------SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV 267 (444)
T ss_dssp ------------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSC
T ss_pred ------HH----hhhcch------HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCccc
Confidence 00 000000 0111222222 22356789999999754 1234455544432
Q ss_pred -CCCcEEEEEeCChhhhhh---cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCC-hHHHHHHH
Q 001161 322 -ASGSRIIITTRDRQVLAN---CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGV-PLALEVLG 396 (1134)
Q Consensus 322 -~~gsrIiiTTR~~~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~g 396 (1134)
..+..||.||.....+.. ...+..+.++..+.++..++|..++.... ..........+++.+.|. +-.|..+.
T Consensus 268 ~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~--~~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 268 DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQ--NSLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC--EECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345667777765533211 13446788999999999999988773322 111234567788888884 54555544
No 204
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.09 E-value=1.2e-06 Score=89.41 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=33.3
Q ss_pred CCCCCEEeccCCCCCC-----CccccccccCcceeec--CCCCcc-----ccccchhCCCCCcEEEecccc
Q 001161 821 LQNLRDLNLNDCGITE-----LPESLGLLSLVTELHL--EGNNFE-----RIPESIIQLSNLEWLFIRYCE 879 (1134)
Q Consensus 821 l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L--s~n~l~-----~lp~~l~~l~~L~~L~Ls~n~ 879 (1134)
.++|++|+|++|.|.. +...+...++|++|+| ++|.|. .+...+...++|++|+|++|.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 3455555666665552 3445555566666666 556665 233445555666666666654
No 205
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.06 E-value=2.7e-05 Score=87.11 Aligned_cols=180 Identities=14% Similarity=0.155 Sum_probs=103.6
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQ 267 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 267 (1134)
|...++++|.+..++.+..++..+. ...++.+.|++|+|||++|+++++.+...| +.+. ....+...+..
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~~---~~i~-----~~~~~~~~i~~- 91 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNADM---MFVN-----GSDCKIDFVRG- 91 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEEE---EEEE-----TTTCCHHHHHT-
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCCE---EEEc-----ccccCHHHHHH-
Confidence 4556789999999999999997543 235688889999999999999998763221 2221 11122222222
Q ss_pred HHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH---HHHHHhcCcCCCCCCcEEEEEeCChhhhh-h-cCC
Q 001161 268 LLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR---QIKILVGRLDLLASGSRIIITTRDRQVLA-N-CGV 342 (1134)
Q Consensus 268 ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~---~l~~l~~~~~~~~~gsrIiiTTR~~~~~~-~-~~~ 342 (1134)
.+....... ...+++-+||+||++... ..+.+...+.....+.++|+||....-.. . ...
T Consensus 92 ~~~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 92 PLTNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp HHHHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred HHHHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 111111100 012367899999998754 34444443333345678888887653211 0 011
Q ss_pred CeEEEecCCCHHhHHHHHH-------HhhcCCCCCCccHHHHHHHHHHHhcCChHHHH
Q 001161 343 DEVYQMKELVHDDALRLFS-------RHAFEGDHPHESHTELACKIIKYARGVPLALE 393 (1134)
Q Consensus 343 ~~~~~l~~L~~~ea~~Lf~-------~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 393 (1134)
..++++++++.++-.+++. ..+.......+ ..+....+++.++|.+-.+.
T Consensus 157 ~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 157 CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIA-DMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBS-CHHHHHHHHHHTCSCTTHHH
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHhCCCCHHHHH
Confidence 2578999999888543322 22211111111 12566778888888765433
No 206
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.02 E-value=9.7e-05 Score=81.48 Aligned_cols=175 Identities=16% Similarity=0.183 Sum_probs=99.9
Q ss_pred ccCCccccchhHHHHHHhhcc-----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhc
Q 001161 190 ENEDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEET 258 (1134)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 258 (1134)
..++++|.+..++++.+.+.. +-...+.|.|+|++|.|||+||++++......| +.+ +
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v-~------- 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISI-K------- 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEE-C-------
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEE-E-------
Confidence 446789999888888876642 123456799999999999999999998764322 122 1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChHH----------------HHHHhcCcCC--
Q 001161 259 GRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPRQ----------------IKILVGRLDL-- 320 (1134)
Q Consensus 259 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~----------------l~~l~~~~~~-- 320 (1134)
...+. ....+... ......+.......+.+|++|+++.... ...++..+..
T Consensus 82 --~~~l~----~~~~g~~~-----~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~ 150 (301)
T 3cf0_A 82 --GPELL----TMWFGESE-----ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 150 (301)
T ss_dssp --HHHHH----HHHHTTCT-----THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred --hHHHH----hhhcCchH-----HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence 11111 11111111 1112223333345678999999975321 2223222211
Q ss_pred CCCCcEEEEEeCChhhhhh-----cCCCeEEEecCCCHHhHHHHHHHhhcCCCCC-CccHHHHHHHHHHHhcCChH
Q 001161 321 LASGSRIIITTRDRQVLAN-----CGVDEVYQMKELVHDDALRLFSRHAFEGDHP-HESHTELACKIIKYARGVPL 390 (1134)
Q Consensus 321 ~~~gsrIiiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~GlPL 390 (1134)
...+..||.||.....+.. ......+.++..+.++-.+++..+.-+.... ... ...++..+.|.|-
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg 222 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSG 222 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCH
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCH
Confidence 1345677778876543221 1245688999999999999988776332211 112 2344555666654
No 207
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.00 E-value=0.0002 Score=80.18 Aligned_cols=259 Identities=16% Similarity=0.190 Sum_probs=136.7
Q ss_pred CCccCCccccchhHHHHHHhhccC---CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTG---STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDL 264 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 264 (1134)
+...+.++|.+..++.+...+..+ ......++|+|++|.||||||+.++..+...|. ... ... .....++
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~s--g~~--~~~~~~l 93 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTS--GPV--LVKQGDM 93 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEE--TTT--CCSHHHH
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe--chH--hcCHHHH
Confidence 334567889888888877666532 223456899999999999999999987643321 000 000 0000111
Q ss_pred HHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh--HHHHHHhcCcCCC--------C----------CC
Q 001161 265 RQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP--RQIKILVGRLDLL--------A----------SG 324 (1134)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~--------~----------~g 324 (1134)
. .+...+ .++-++++|+++.. ...+.+...+... + +.
T Consensus 94 ~----------------------~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 94 A----------------------AILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp H----------------------HHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CC
T ss_pred H----------------------HHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence 0 011111 23457778887543 2233332111100 0 11
Q ss_pred cEEE-EEeCChhhhhhc--CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHHHHh--
Q 001161 325 SRII-ITTRDRQVLANC--GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLGRYL-- 399 (1134)
Q Consensus 325 srIi-iTTR~~~~~~~~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L-- 399 (1134)
..++ .|++...+.... .....+.+++.+.++-.+++.+.+-... .....+.+..|++.++|.|-.+.-+...+
T Consensus 151 ~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~ 228 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRGTPRIAIRLTKRVRD 228 (334)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred eEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 2233 344433321111 1234678999999999999988763211 12335678889999999997554332221
Q ss_pred ----cCC---CHHHHHHHHHHHHcCCCCchhhhhhhhhcCCCHHHHHHHHhhhcccCCC--CHHHHHHHhhhCCCchhcc
Q 001161 400 ----YGK---RREVWENAISKWETAPPKGIQDALKISYDGLDDKEQNVFLDIACFFIDD--DRDTVTKFLDDCEFFATSG 470 (1134)
Q Consensus 400 ----~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~~~~~~~~ 470 (1134)
.+. +.+.-+.++..+. ....+++...+.++..++-.+.+. ..+.+...........+..
T Consensus 229 ~a~~~~~~~It~~~v~~al~~~~------------~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~ 296 (334)
T 1in4_A 229 MLTVVKADRINTDIVLKTMEVLN------------IDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEV 296 (334)
T ss_dssp HHHHHTCSSBCHHHHHHHHHHHT------------CCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHhC------------CCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHH
Confidence 111 3334444444332 112356777666666555444433 3344444443321111222
Q ss_pred hH-HhhccCCeeEecCCeEEE
Q 001161 471 IE-VLVDKHLITISVRNKIKM 490 (1134)
Q Consensus 471 i~-~L~~~sLi~~~~~~~~~m 490 (1134)
.+ .|...++|+....+++..
T Consensus 297 ~~~~l~~~g~i~~~~~gr~~~ 317 (334)
T 1in4_A 297 YEPYLLQAGFLARTPRGRIVT 317 (334)
T ss_dssp THHHHHHTTSEEEETTEEEEC
T ss_pred HHHHHHHcCCeecccccHHhh
Confidence 22 688899999987776643
No 208
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.92 E-value=3.3e-06 Score=85.99 Aligned_cols=87 Identities=10% Similarity=0.098 Sum_probs=50.0
Q ss_pred cCCCCCcEEEccCCcCcc-----cCccccCCCCCCEEEecCCCCCCCC----cccccCCCCCCCEEec--cCCCCCC---
Q 001161 771 GYLEALDSLHAVGTAIRE-----LPPSIVRLKSVRAIYFGRNRGLSLP----ITFSVDGLQNLRDLNL--NDCGITE--- 836 (1134)
Q Consensus 771 ~~l~~L~~L~L~~n~i~~-----lp~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~l~~L~~L~L--s~n~l~~--- 836 (1134)
...++|++|+|++|.|.. +...+...++|+.|+|++|. +... ....+...++|++|+| ++|.+..
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~ 140 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence 334445555555554441 22233444556666666554 2221 1223455567777887 6777773
Q ss_pred --CccccccccCcceeecCCCCcc
Q 001161 837 --LPESLGLLSLVTELHLEGNNFE 858 (1134)
Q Consensus 837 --lp~~l~~l~~L~~L~Ls~n~l~ 858 (1134)
+...+...++|++|+|++|.+.
T Consensus 141 ~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 141 MEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCcCEEeccCCCCC
Confidence 4556667788999999888876
No 209
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=6.4e-05 Score=84.47 Aligned_cols=171 Identities=16% Similarity=0.205 Sum_probs=100.9
Q ss_pred ccCCccccchhHHHHHHhhcc-----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhc
Q 001161 190 ENEDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEET 258 (1134)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 258 (1134)
..+++.|.+...++|.+.+.. +-...+-|.++|++|.|||.||+++++.....|- .+ ...+....
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~---~v-~~s~l~sk 221 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFI---RV-SGAELVQK 221 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEE---EE-EGGGGSCS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCce---EE-EhHHhhcc
Confidence 456788999999988876542 2234466999999999999999999998765542 11 11111111
Q ss_pred C-C-HHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH----------------HHHHHhcCcCC
Q 001161 259 G-R-LGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR----------------QIKILVGRLDL 320 (1134)
Q Consensus 259 ~-~-~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~ 320 (1134)
+ + -....++++ ...-...+++|++|+++... .+..++..++.
T Consensus 222 ~vGese~~vr~lF--------------------~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 281 (405)
T 4b4t_J 222 YIGEGSRMVRELF--------------------VMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDG 281 (405)
T ss_dssp STTHHHHHHHHHH--------------------HHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHH--------------------HHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhc
Confidence 0 1 111112221 12223578999999986421 12333333332
Q ss_pred C--CCCcEEEEEeCChhhhh-----hcCCCeEEEecCCCHHhHHHHHHHhhcCCCCC-CccHHHHHHHHHHHhcCC
Q 001161 321 L--ASGSRIIITTRDRQVLA-----NCGVDEVYQMKELVHDDALRLFSRHAFEGDHP-HESHTELACKIIKYARGV 388 (1134)
Q Consensus 321 ~--~~gsrIiiTTR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~Gl 388 (1134)
+ ..+..||.||...+.+. .-..+..++++..+.++-.++|..+.-+.... ..+ ..++++.+.|.
T Consensus 282 ~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~ 353 (405)
T 4b4t_J 282 FETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGC 353 (405)
T ss_dssp TTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSC
T ss_pred cCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCC
Confidence 2 33445677776554422 12456789999999999999998877432221 122 34566777765
No 210
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.89 E-value=0.00014 Score=81.44 Aligned_cols=180 Identities=13% Similarity=0.086 Sum_probs=100.3
Q ss_pred hhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHH-------
Q 001161 199 LPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLST------- 271 (1134)
Q Consensus 199 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~------- 271 (1134)
...+.+...+..+ .-.+.+.++|++|+|||++|+++++.+....... .. ..+.......+...
T Consensus 9 ~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~--------~c~~c~~c~~~~~~~~~d~~~ 78 (334)
T 1a5t_A 9 PDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG-HK--------SCGHCRGCQLMQAGTHPDYYT 78 (334)
T ss_dssp HHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TB--------CCSCSHHHHHHHHTCCTTEEE
T ss_pred HHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-CC--------CCCCCHHHHHHhcCCCCCEEE
Confidence 3455566655433 2245789999999999999999998764332110 00 00000000000000
Q ss_pred HhcCC-CCCCCccccHHHHHHhh-----cCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeCChh-hhhhc-C
Q 001161 272 LLNDG-NVKNFPNIDLNFQSKKL-----TRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTRDRQ-VLANC-G 341 (1134)
Q Consensus 272 l~~~~-~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR~~~-~~~~~-~ 341 (1134)
+.... ......++ ++.+.+.+ .+++-++|+|+++.. +..+.|...+....++..+|++|.+.. +.... .
T Consensus 79 ~~~~~~~~~~~i~~-ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~S 157 (334)
T 1a5t_A 79 LAPEKGKNTLGVDA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRS 157 (334)
T ss_dssp ECCCTTCSSBCHHH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHT
T ss_pred EeccccCCCCCHHH-HHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhh
Confidence 00000 00000111 11222222 245678999999764 345566665555556777777776653 33222 2
Q ss_pred CCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHHH
Q 001161 342 VDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLALEVLG 396 (1134)
Q Consensus 342 ~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 396 (1134)
....+++++++.++..+.+...+ . ...+.+..+++.++|.|..+..+.
T Consensus 158 Rc~~~~~~~~~~~~~~~~L~~~~----~---~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 158 RCRLHYLAPPPEQYAVTWLSREV----T---MSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHC----C---CCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred cceeeeCCCCCHHHHHHHHHHhc----C---CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 34689999999999999988765 1 113556788999999997665443
No 211
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.88 E-value=9.2e-05 Score=86.86 Aligned_cols=180 Identities=16% Similarity=0.160 Sum_probs=100.5
Q ss_pred cCCccccchhHHHHHHhhccC-----------CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcC
Q 001161 191 NEDLVGVRLPMKEIESLLRTG-----------STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETG 259 (1134)
Q Consensus 191 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 259 (1134)
...++|.+..++++.+.+... ....+-|.|+|++|.|||++|+++++..... ++..+........
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~----fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSKL 278 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSE----EEEEEHHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCC----EEEEEchHhhhhh
Confidence 456999999999998877532 2334569999999999999999998875322 2222211111110
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh-------------HHHHHHhcCcCC--CCCC
Q 001161 260 RLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP-------------RQIKILVGRLDL--LASG 324 (1134)
Q Consensus 260 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-------------~~l~~l~~~~~~--~~~g 324 (1134)
...... .....+......++.+|+||+++.. .....|...+.. ...+
T Consensus 279 -~g~~~~-----------------~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 279 -AGESES-----------------NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp -TTHHHH-----------------HHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred -cchhHH-----------------HHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 000000 0112223333456789999998321 112222222211 1334
Q ss_pred cEEEEEeCChhhhh-h----cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCC-hHHHHHH
Q 001161 325 SRIIITTRDRQVLA-N----CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGV-PLALEVL 395 (1134)
Q Consensus 325 srIiiTTR~~~~~~-~----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~ 395 (1134)
.+||.||.....+. . ......+.++..+.++-.+++..++.......+ ....+++..+.|. +-.|..+
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~---~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT---CCHHHHHHTCTTCCHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch---hhHHHHHHHccCCcHHHHHHH
Confidence 56666776553211 1 133457899999999999999987733221111 1134566666664 4444444
No 212
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.84 E-value=0.00022 Score=80.17 Aligned_cols=183 Identities=11% Similarity=0.185 Sum_probs=104.9
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc-CCceeeeeechhHhhcCCHHHHHH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH-FAGSFFARNVREAEETGRLGDLRQ 266 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~ 266 (1134)
|.....++|.+..++.+...+..+. ...+.++|++|+||||+|+.++..+... +... +. .. ..+...+...+.+
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~-~~-~~-~~~~~~~~~~ir~ 95 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNM-VL-EL-NASDDRGIDVVRN 95 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHH-EE-EE-CTTSCCSHHHHHT
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHcCCCccce-EE-EE-cCcccccHHHHHH
Confidence 4455678899988999988887542 3338999999999999999999876432 1111 11 00 1111122222221
Q ss_pred HHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeCChh-hhhh-cCC
Q 001161 267 QLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTRDRQ-VLAN-CGV 342 (1134)
Q Consensus 267 ~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR~~~-~~~~-~~~ 342 (1134)
.+..+..... .+...+-++|+|+++.. +..+.+...+.......++|++|.... +... ...
T Consensus 96 -~i~~~~~~~~--------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR 160 (340)
T 1sxj_C 96 -QIKDFASTRQ--------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQ 160 (340)
T ss_dssp -HHHHHHHBCC--------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred -HHHHHHhhcc--------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhh
Confidence 1111110000 01234668999998643 334444443333345677777775542 2111 122
Q ss_pred CeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCChHHH
Q 001161 343 DEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVPLAL 392 (1134)
Q Consensus 343 ~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 392 (1134)
...+++.+++.++..+.+...+-..... -..+..+.+++.++|.+--+
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~--i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 161 CTRFRFQPLPQEAIERRIANVLVHEKLK--LSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTCC--BCHHHHHHHHHHHTTCHHHH
T ss_pred ceeEeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 3578999999999988887765222111 12456778888999987643
No 213
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.83 E-value=0.00014 Score=85.47 Aligned_cols=150 Identities=13% Similarity=0.132 Sum_probs=83.6
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccC------CceeeeeechhHhhcCCH
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF------AGSFFARNVREAEETGRL 261 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~ 261 (1134)
+...+.+|||+.+++.+...+.... ..-+.|+|++|+|||++|+.++..+...+ ...++..+..
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------- 245 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------- 245 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred cCCCCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--------
Confidence 3445679999999999999987533 23468999999999999999999875432 1122221111
Q ss_pred HHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChHHHHHHhcCcCCCCCCcEEEEEeCChhhhh---
Q 001161 262 GDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPRQIKILVGRLDLLASGSRIIITTRDRQVLA--- 338 (1134)
Q Consensus 262 ~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~--- 338 (1134)
....+ .........+...-..++.+|++| ...+....|...+. ....++|.+|.......
T Consensus 246 --------~~~~g-----~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~ 308 (468)
T 3pxg_A 246 --------TKYRG-----EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIE 308 (468)
T ss_dssp --------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHT
T ss_pred --------ccccc-----hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhh
Confidence 00000 000111222222233567899999 22222333444332 22356666665443111
Q ss_pred ---h-cCCCeEEEecCCCHHhHHHHHHHhh
Q 001161 339 ---N-CGVDEVYQMKELVHDDALRLFSRHA 364 (1134)
Q Consensus 339 ---~-~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1134)
. ...-.++.++.++.++..+++...+
T Consensus 309 ~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 0 0122468999999999999998755
No 214
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00019 Score=81.77 Aligned_cols=170 Identities=16% Similarity=0.185 Sum_probs=99.1
Q ss_pred cCCccccchhHHHHHHhhcc-----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhc-
Q 001161 191 NEDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEET- 258 (1134)
Q Consensus 191 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~- 258 (1134)
.+++.|.+...++|.+.+.. +-...+-|.++|++|.|||+||++++++....|-. + ........
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~---v-s~s~L~sk~ 283 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIR---V-IGSELVQKY 283 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE---E-EGGGGCCCS
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEE---E-EhHHhhccc
Confidence 35789999999998876532 22456779999999999999999999987654421 1 11111111
Q ss_pred CCH-HHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH----------------HHHHHhcCcCCC
Q 001161 259 GRL-GDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR----------------QIKILVGRLDLL 321 (1134)
Q Consensus 259 ~~~-~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~ 321 (1134)
.+- ....+.+ ....-...+++|++|+++..- .+..++..+...
T Consensus 284 vGesek~ir~l--------------------F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 343 (467)
T 4b4t_H 284 VGEGARMVREL--------------------FEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF 343 (467)
T ss_dssp SSHHHHHHHHH--------------------HHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHH--------------------HHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc
Confidence 111 1111111 112224578999999986331 122223222222
Q ss_pred --CCCcEEEEEeCChhhhhh-----cCCCeEEEecCCCHHhHHHHHHHhhcCCCCC-CccHHHHHHHHHHHhcCC
Q 001161 322 --ASGSRIIITTRDRQVLAN-----CGVDEVYQMKELVHDDALRLFSRHAFEGDHP-HESHTELACKIIKYARGV 388 (1134)
Q Consensus 322 --~~gsrIiiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~Gl 388 (1134)
..+..||.||.....+.. -..+..++++..+.++-.++|..+.-+.... ..+ ...+++.+.|.
T Consensus 344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~Gf 414 (467)
T 4b4t_H 344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNS 414 (467)
T ss_dssp CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSC
T ss_pred CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCC
Confidence 234455667765543221 1356789999999999999998877432211 122 34566677765
No 215
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.79 E-value=3.4e-05 Score=74.88 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=35.9
Q ss_pred CccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 193 DLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 193 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
+++|++..++++.+.+..-.....-|.|+|.+|.|||++|+++++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 57999999999888775422233447899999999999999998753
No 216
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.79 E-value=5.9e-06 Score=88.46 Aligned_cols=13 Identities=38% Similarity=0.601 Sum_probs=6.2
Q ss_pred CcceeecCCCCcc
Q 001161 846 LVTELHLEGNNFE 858 (1134)
Q Consensus 846 ~L~~L~Ls~n~l~ 858 (1134)
+|++|+|++|.+.
T Consensus 221 ~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 221 KLEELWLDGNSLC 233 (267)
T ss_dssp CCSEEECTTSTTG
T ss_pred CcceEEccCCcCc
Confidence 4444444444444
No 217
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.75 E-value=0.00016 Score=77.70 Aligned_cols=182 Identities=16% Similarity=0.111 Sum_probs=94.7
Q ss_pred CCccCCccccchhHHHHHHhhcc---C-------CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhh
Q 001161 188 QSENEDLVGVRLPMKEIESLLRT---G-------STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEE 257 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 257 (1134)
+...++++|.+..++++.+.+.. . ....+-|.|+|++|.||||||+++++.....| +.+.. .....
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~~-~~~~~ 83 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTISG-SDFVE 83 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEECS-CSSTT
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEeH-HHHHH
Confidence 34556789998888777665321 0 11234588999999999999999998764332 22211 00000
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh----------------HHHHHHhcCcCC-
Q 001161 258 TGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP----------------RQIKILVGRLDL- 320 (1134)
Q Consensus 258 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~l~~l~~~~~~- 320 (1134)
.. ...........+.......+.++++|+++.. ..+..+...+..
T Consensus 84 ~~------------------~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 145 (257)
T 1lv7_A 84 MF------------------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF 145 (257)
T ss_dssp SC------------------CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC
T ss_pred Hh------------------hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCc
Confidence 00 0000001111222222345679999998321 112233222211
Q ss_pred -CCCCcEEEEEeCChhhhh-hc----CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcC-ChHHHH
Q 001161 321 -LASGSRIIITTRDRQVLA-NC----GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARG-VPLALE 393 (1134)
Q Consensus 321 -~~~gsrIiiTTR~~~~~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~G-lPLal~ 393 (1134)
...+..||.||.....+. .. ..+..+.++..+.++-.+++..+.-+.....+. ....++..+.| .+--|.
T Consensus 146 ~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~---~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 146 EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI---DAAIIARGTPGFSGADLA 222 (257)
T ss_dssp CSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCCHHHHH
T ss_pred ccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc---cHHHHHHHcCCCCHHHHH
Confidence 134456777776554321 11 235678888889888888887765322111111 12345666677 554444
Q ss_pred H
Q 001161 394 V 394 (1134)
Q Consensus 394 ~ 394 (1134)
.
T Consensus 223 ~ 223 (257)
T 1lv7_A 223 N 223 (257)
T ss_dssp H
T ss_pred H
Confidence 3
No 218
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.75 E-value=6e-05 Score=86.14 Aligned_cols=172 Identities=14% Similarity=0.166 Sum_probs=99.5
Q ss_pred CccCCccccchhHHHHHHhhcc-----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhh
Q 001161 189 SENEDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEE 257 (1134)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 257 (1134)
...+++.|.+...++|.+.+.. +-...+-|.++|++|.|||.||++++......|- .........
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~----~v~~s~l~~ 253 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFL----KLAAPQLVQ 253 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE----EEEGGGGCS
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEE----EEehhhhhh
Confidence 3456789999999988875432 2234577999999999999999999998755432 111111111
Q ss_pred c-CCH-HHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH----------------HHHHHhcCcC
Q 001161 258 T-GRL-GDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR----------------QIKILVGRLD 319 (1134)
Q Consensus 258 ~-~~~-~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~ 319 (1134)
. .+- ....+.++. ..-...+++|++|+++..- .+..++..+.
T Consensus 254 ~~vGese~~ir~lF~--------------------~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ld 313 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFA--------------------LAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLD 313 (434)
T ss_dssp SCSSHHHHHHHHHHH--------------------HHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHH--------------------HHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhh
Confidence 1 111 111122211 1123468899999985320 1223444443
Q ss_pred CCC--CCcEEEEEeCChhhhhhc-----CCCeEEEecCCCHHhHHHHHHHhhcCCCC-CCccHHHHHHHHHHHhcCC
Q 001161 320 LLA--SGSRIIITTRDRQVLANC-----GVDEVYQMKELVHDDALRLFSRHAFEGDH-PHESHTELACKIIKYARGV 388 (1134)
Q Consensus 320 ~~~--~gsrIiiTTR~~~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~Gl 388 (1134)
.+. .+..||.||.....+... ..+..++++..+.++..++|..+.-+... ...+ ..++++.+.|.
T Consensus 314 g~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 314 GFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp TSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred ccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 332 344566677766543321 24567899999999999999876633221 1122 34566677664
No 219
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.75 E-value=2.9e-05 Score=84.28 Aligned_cols=154 Identities=14% Similarity=0.168 Sum_probs=85.5
Q ss_pred CccCCccccchhHHHHHHhhcc----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhc
Q 001161 189 SENEDLVGVRLPMKEIESLLRT----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEET 258 (1134)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 258 (1134)
...++++|.+..++++.+.+.. +....+-+.|+|++|+|||+||+++++.....|-. +. .......
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v~-~~~~~~~ 83 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---MG-GSSFIEM 83 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---CC-SCTTTTS
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---ec-hHHHHHh
Confidence 3456799999998888876641 11112347899999999999999999876543311 10 0000000
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChHH-----------------HHHHhcCcCCC
Q 001161 259 GRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPRQ-----------------IKILVGRLDLL 321 (1134)
Q Consensus 259 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~-----------------l~~l~~~~~~~ 321 (1134)
..+. ...... ..+......++.+|+||+++.... +..+...+...
T Consensus 84 -------------~~~~--~~~~~~---~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 145 (268)
T 2r62_A 84 -------------FVGL--GASRVR---DLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF 145 (268)
T ss_dssp -------------CSSS--CSSSSS---TTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCS
T ss_pred -------------hcch--HHHHHH---HHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCc
Confidence 0000 001111 122222334678999999965421 22233333222
Q ss_pred C---CCcEEEEEeCChhhhhh-----cCCCeEEEecCCCHHhHHHHHHHhh
Q 001161 322 A---SGSRIIITTRDRQVLAN-----CGVDEVYQMKELVHDDALRLFSRHA 364 (1134)
Q Consensus 322 ~---~gsrIiiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1134)
. ....||.||.....+.. ......+.++..+.++..+++...+
T Consensus 146 ~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 146 GSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred ccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 1 22456777765543211 1234567888889888888887665
No 220
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.00012 Score=83.62 Aligned_cols=171 Identities=16% Similarity=0.230 Sum_probs=100.4
Q ss_pred ccCCccccchhHHHHHHhhcc-----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhc
Q 001161 190 ENEDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEET 258 (1134)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 258 (1134)
..+++.|.+..+++|.+.+.. +-...+-|.++|++|.|||+||+++++.....|- ..........
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~----~v~~s~l~sk 254 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI----FSPASGIVDK 254 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE----EEEGGGTCCS
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EEehhhhccc
Confidence 456788999999888876542 2234577999999999999999999998755432 1111111111
Q ss_pred C-CH-HHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH----------------HHHHHhcCcCC
Q 001161 259 G-RL-GDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR----------------QIKILVGRLDL 320 (1134)
Q Consensus 259 ~-~~-~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~ 320 (1134)
+ +- ....+.+ ....-...+++|++|+++..- .+..++..+..
T Consensus 255 ~~Gese~~ir~~--------------------F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 314 (437)
T 4b4t_L 255 YIGESARIIREM--------------------FAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDG 314 (437)
T ss_dssp SSSHHHHHHHHH--------------------HHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHH--------------------HHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhc
Confidence 1 10 1111111 112224578999999986320 12233333322
Q ss_pred C--CCCcEEEEEeCChhhhhhc-----CCCeEEEecCCCHHhHHHHHHHhhcCCCCC-CccHHHHHHHHHHHhcCC
Q 001161 321 L--ASGSRIIITTRDRQVLANC-----GVDEVYQMKELVHDDALRLFSRHAFEGDHP-HESHTELACKIIKYARGV 388 (1134)
Q Consensus 321 ~--~~gsrIiiTTR~~~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~Gl 388 (1134)
+ ..+..||.||.....+... ..+..++++..+.++-.++|..+.-+.... ..+ ...+++.+.|.
T Consensus 315 ~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~ 386 (437)
T 4b4t_L 315 FDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGF 386 (437)
T ss_dssp SSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSC
T ss_pred ccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCC
Confidence 2 2455677788766543321 135678899999999999998776433221 222 34566667664
No 221
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.70 E-value=0.00011 Score=74.10 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=29.7
Q ss_pred hhHHHHHHhhccCC-CCeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 199 LPMKEIESLLRTGS-TNVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 199 ~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
..++.+.+++..-. ...+.++|+|++|.||||||++++..+.
T Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 21 RALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33444444443211 2346799999999999999999999875
No 222
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.68 E-value=4.9e-05 Score=78.48 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=39.3
Q ss_pred cCCccccch----hHHHHHHhhccCCCC--eeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 191 NEDLVGVRL----PMKEIESLLRTGSTN--VYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 191 ~~~~vGr~~----~~~~l~~~L~~~~~~--~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
.+.|++.+. .++.+.+++...... .+.+.|+|++|+|||+||+++++....+...++|+
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 455666543 334444555433221 26799999999999999999999876655455555
No 223
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.68 E-value=3.3e-05 Score=82.67 Aligned_cols=65 Identities=18% Similarity=0.251 Sum_probs=49.9
Q ss_pred CCCCCCEEeccCCCCCCC---ccccccccCcceeecCCCCccccccchhCCC--CCcEEEeccccCCCccC
Q 001161 820 GLQNLRDLNLNDCGITEL---PESLGLLSLVTELHLEGNNFERIPESIIQLS--NLEWLFIRYCERLQSLP 885 (1134)
Q Consensus 820 ~l~~L~~L~Ls~n~l~~l---p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~--~L~~L~Ls~n~~l~~lp 885 (1134)
++++|+.|+|++|+|+.+ |..+..+++|+.|+|++|+|+.+. .+..+. +|+.|+|++|++.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 466777777777777754 456678899999999999998763 344444 99999999999887666
No 224
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.66 E-value=0.00018 Score=79.73 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=36.6
Q ss_pred CccccchhHHHHHHhhcc------------CCCCeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 193 DLVGVRLPMKEIESLLRT------------GSTNVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 193 ~~vGr~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
.++|.+..++.+...+.. .......+.|+|++|+|||++|+++++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 578888888888776643 011234588999999999999999998764
No 225
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00018 Score=81.02 Aligned_cols=172 Identities=16% Similarity=0.201 Sum_probs=99.2
Q ss_pred CccCCccccchhHHHHHHhhcc-----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhh
Q 001161 189 SENEDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEE 257 (1134)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 257 (1134)
...+++-|.+...++|.+.+.. +-...+-|.++|++|.|||.||++++......|- .....+...
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi----~v~~s~l~s 254 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL----RIVGSELIQ 254 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE----EEESGGGCC
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEE----EEEHHHhhh
Confidence 3456788999998888776532 2234567999999999999999999998765442 111111111
Q ss_pred cC-C-HHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh----------------HHHHHHhcCcC
Q 001161 258 TG-R-LGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP----------------RQIKILVGRLD 319 (1134)
Q Consensus 258 ~~-~-~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~l~~l~~~~~ 319 (1134)
.+ + -....+.++ ...-...+++|++|+++.. ..+..++..++
T Consensus 255 k~vGesek~ir~lF--------------------~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lD 314 (437)
T 4b4t_I 255 KYLGDGPRLCRQIF--------------------KVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD 314 (437)
T ss_dssp SSSSHHHHHHHHHH--------------------HHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHH--------------------HHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhh
Confidence 10 1 111112221 1122356899999998632 01222332222
Q ss_pred CC--CCCcEEEEEeCChhhhhhc-----CCCeEEEecCCCHHhHHHHHHHhhcCCCCC-CccHHHHHHHHHHHhcCC
Q 001161 320 LL--ASGSRIIITTRDRQVLANC-----GVDEVYQMKELVHDDALRLFSRHAFEGDHP-HESHTELACKIIKYARGV 388 (1134)
Q Consensus 320 ~~--~~gsrIiiTTR~~~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~Gl 388 (1134)
.. ..+..||.||...+.+... ..+..++++..+.++-.++|..+.-+.... ..+ ...+++.+.|.
T Consensus 315 g~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 315 GFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDL 387 (437)
T ss_dssp HCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSC
T ss_pred CcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 22 2345667777666554322 234578899999999999998877432211 122 34566666664
No 226
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.58 E-value=1.9e-05 Score=78.24 Aligned_cols=87 Identities=14% Similarity=0.224 Sum_probs=53.7
Q ss_pred cCcceeecCCCCcccc-ccchhCCCCCcEEEeccccCCCc-----cCCc---CCCcCeEeccCCcccccccCCCCCCCCc
Q 001161 845 SLVTELHLEGNNFERI-PESIIQLSNLEWLFIRYCERLQS-----LPKL---PCNLIWLDAHHCTALESLPGLFPSSNES 915 (1134)
Q Consensus 845 ~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~~l~~-----lp~~---~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 915 (1134)
..|+.|||++|.++.. -..+.++++|+.|+|++|..++. +... .++|++|++++|..++... ......++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-IIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-HHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-HHHHhcCC
Confidence 3566666666666521 13456677777777777765443 2222 2467888888887665432 11123678
Q ss_pred cceeeeccCCCCCCccc
Q 001161 916 YLRTLYLSDNFKLDPND 932 (1134)
Q Consensus 916 ~L~~L~Ls~n~~L~~~~ 932 (1134)
+|+.|+|++|..+++..
T Consensus 140 ~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp TCCEEEEESCTTCCCHH
T ss_pred CCCEEECCCCCCCCchH
Confidence 89999999997776543
No 227
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00013 Score=83.32 Aligned_cols=171 Identities=16% Similarity=0.193 Sum_probs=92.8
Q ss_pred ccCCccccchhHHHHHHhhcc-----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhh-
Q 001161 190 ENEDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEE- 257 (1134)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~- 257 (1134)
..+++.|.+...++|.+.+.. +-...+-|.++|++|.|||+||+++++.....|- .........
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~----~v~~~~l~~~ 245 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFI----RVNGSEFVHK 245 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEE----EEEGGGTCCS
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE----EEecchhhcc
Confidence 346789999999888776542 2244567999999999999999999998754442 111111111
Q ss_pred cCCH-HHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH----------------HHHHHhcCcCC
Q 001161 258 TGRL-GDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR----------------QIKILVGRLDL 320 (1134)
Q Consensus 258 ~~~~-~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~ 320 (1134)
..+- ....++++ ...-...+++|++|+++... .+..++..++.
T Consensus 246 ~~Ge~e~~ir~lF--------------------~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg 305 (428)
T 4b4t_K 246 YLGEGPRMVRDVF--------------------RLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDG 305 (428)
T ss_dssp SCSHHHHHHHHHH--------------------HHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHH--------------------HHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhC
Confidence 1110 11111111 12223568899999985221 12223322221
Q ss_pred --CCCCcEEEEEeCChhhhhh-----cCCCeEEEecCC-CHHhHHHHHHHhhcCCCC-CCccHHHHHHHHHHHhcCC
Q 001161 321 --LASGSRIIITTRDRQVLAN-----CGVDEVYQMKEL-VHDDALRLFSRHAFEGDH-PHESHTELACKIIKYARGV 388 (1134)
Q Consensus 321 --~~~gsrIiiTTR~~~~~~~-----~~~~~~~~l~~L-~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~Gl 388 (1134)
...+..||.||.....+.. ...+..++++.+ +.++-.++|..+.-+... +..+ ...+++.+.|.
T Consensus 306 ~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~ 378 (428)
T 4b4t_K 306 FDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSL 378 (428)
T ss_dssp SCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTC
T ss_pred CCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCC
Confidence 1344567777765543221 123456778666 455555667666533221 1222 34566666664
No 228
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.57 E-value=0.0012 Score=76.76 Aligned_cols=174 Identities=14% Similarity=0.160 Sum_probs=97.1
Q ss_pred ccCCccccchhHHHHHHhhcc----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcC
Q 001161 190 ENEDLVGVRLPMKEIESLLRT----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETG 259 (1134)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 259 (1134)
..++++|.+..++++.+.... +..-.+-|.|+|++|.|||+||++++.+....|- .+ +.......+
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~---~i-s~~~~~~~~ 89 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFF---HI-SGSDFVELF 89 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEE---EE-EGGGTTTCC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCee---eC-CHHHHHHHH
Confidence 345788988887777665432 1111234889999999999999999987643321 11 111111110
Q ss_pred -CHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh----------------HHHHHHhcCcCCC-
Q 001161 260 -RLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP----------------RQIKILVGRLDLL- 321 (1134)
Q Consensus 260 -~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~l~~l~~~~~~~- 321 (1134)
+.. .......+.......+.+|+||+++.. ..+..+...+..+
T Consensus 90 ~g~~-------------------~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~ 150 (476)
T 2ce7_A 90 VGVG-------------------AARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD 150 (476)
T ss_dssp TTHH-------------------HHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC
T ss_pred hccc-------------------HHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC
Confidence 100 000112233333457889999998542 1133333322211
Q ss_pred -CCCcEEEEEeCChhhhhh--c---CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCCh
Q 001161 322 -ASGSRIIITTRDRQVLAN--C---GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVP 389 (1134)
Q Consensus 322 -~~gsrIiiTTR~~~~~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 389 (1134)
..+..||.||.....+.. . ..+..+.++..+.++-.+++..++-+.....+. ....+++.+.|..
T Consensus 151 ~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 151 SKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp GGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence 245677777777654321 1 234588899999888888888776432211111 1344677777776
No 229
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.56 E-value=0.00055 Score=85.75 Aligned_cols=149 Identities=13% Similarity=0.119 Sum_probs=84.1
Q ss_pred CccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccC------CceeeeeechhHhhcCCHH
Q 001161 189 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF------AGSFFARNVREAEETGRLG 262 (1134)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 262 (1134)
...+.+|||+.+++.+...|.... ..-+.++|++|+|||++|+.+++.+.... ...++..+. +
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------g-- 245 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------G-- 245 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------c--
Confidence 445679999999999999987533 23478999999999999999999874321 112221111 0
Q ss_pred HHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChHHHHHHhcCcCCCCCCcEEEEEeCChhhhhhc--
Q 001161 263 DLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPRQIKILVGRLDLLASGSRIIITTRDRQVLANC-- 340 (1134)
Q Consensus 263 ~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~-- 340 (1134)
..............+......++.+|++| ...+....+...+. ....++|.||.........
T Consensus 246 ------------~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 246 ------------TKYRGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred ------------ccccchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 00000001111222233334577899999 22233333444333 2345667666554411100
Q ss_pred -----CCCeEEEecCCCHHhHHHHHHHhh
Q 001161 341 -----GVDEVYQMKELVHDDALRLFSRHA 364 (1134)
Q Consensus 341 -----~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1134)
..-..+.++.++.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 112568999999999999998654
No 230
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.54 E-value=0.00022 Score=90.40 Aligned_cols=51 Identities=18% Similarity=0.318 Sum_probs=42.2
Q ss_pred CccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 189 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
...+.+|||+.+++.+...|.... .+.+.++|.+|+||||+|+.+++++..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 455679999999999999886533 334789999999999999999998744
No 231
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.54 E-value=0.00058 Score=85.71 Aligned_cols=156 Identities=13% Similarity=0.125 Sum_probs=88.7
Q ss_pred CccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccC------CceeeeeechhHhhcCCHH
Q 001161 189 SENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF------AGSFFARNVREAEETGRLG 262 (1134)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 262 (1134)
...+.++||+.+++.+.+.|.... ..-+.|+|.+|+|||++|+.++.++.... ...+|..+.....
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~------ 254 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL------ 254 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---------
T ss_pred CCCCCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh------
Confidence 345679999999999999987542 34578999999999999999998764321 2222221111100
Q ss_pred HHHHHHHHHHhcCCCCCCCccccHHHHHHhh-cCCcceEEEecCCCh----------HHHHHHhcCcCCCCCCcEEEEEe
Q 001161 263 DLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL-TRKKVLIVFDDVNHP----------RQIKILVGRLDLLASGSRIIITT 331 (1134)
Q Consensus 263 ~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~----------~~l~~l~~~~~~~~~gsrIiiTT 331 (1134)
.........+.....+.+.+ ..++.+|++|+++.. .+...++..+.. ..+.++|.+|
T Consensus 255 -----------~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at 322 (758)
T 1r6b_X 255 -----------AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGST 322 (758)
T ss_dssp -----------CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEE
T ss_pred -----------ccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEe
Confidence 00000111111122222222 335789999999754 222233322221 2345666666
Q ss_pred CChhhhhhc-------CCCeEEEecCCCHHhHHHHHHHhh
Q 001161 332 RDRQVLANC-------GVDEVYQMKELVHDDALRLFSRHA 364 (1134)
Q Consensus 332 R~~~~~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1134)
......... ..-..+.++.++.++..+++...+
T Consensus 323 ~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred CchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 544321111 112368899999999988887644
No 232
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.48 E-value=7.8e-05 Score=73.88 Aligned_cols=83 Identities=20% Similarity=0.273 Sum_probs=42.6
Q ss_pred CCCEEEecCCCCCCCCcccccCCCCCCCEEeccCCC-CCC-Ccccccc----ccCcceeecCCC-Ccc--ccccchhCCC
Q 001161 798 SVRAIYFGRNRGLSLPITFSVDGLQNLRDLNLNDCG-ITE-LPESLGL----LSLVTELHLEGN-NFE--RIPESIIQLS 868 (1134)
Q Consensus 798 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-lp~~l~~----l~~L~~L~Ls~n-~l~--~lp~~l~~l~ 868 (1134)
+|+.|+++++. ++...-..+.++++|+.|+|++|. +++ --..+.. .++|++|+|++| +++ .+ ..+.+++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFR 139 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCT
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCC
Confidence 34444444443 222222234456666666666663 442 1112222 235777777776 365 22 2455677
Q ss_pred CCcEEEeccccCCC
Q 001161 869 NLEWLFIRYCERLQ 882 (1134)
Q Consensus 869 ~L~~L~Ls~n~~l~ 882 (1134)
+|+.|+|++|+.++
T Consensus 140 ~L~~L~L~~c~~It 153 (176)
T 3e4g_A 140 NLKYLFLSDLPGVK 153 (176)
T ss_dssp TCCEEEEESCTTCC
T ss_pred CCCEEECCCCCCCC
Confidence 77777777776544
No 233
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.47 E-value=0.00036 Score=77.35 Aligned_cols=49 Identities=18% Similarity=0.337 Sum_probs=38.0
Q ss_pred CccccchhHHHHHHhhccCC-------CCeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 193 DLVGVRLPMKEIESLLRTGS-------TNVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 193 ~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
.++|.+..++.+...+.... .....+.++|++|+|||++|+.++.....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 47888888888877765421 12357999999999999999999987644
No 234
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.41 E-value=0.00062 Score=74.73 Aligned_cols=146 Identities=10% Similarity=0.092 Sum_probs=88.1
Q ss_pred ccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHh---ccCCceeeeeechhHhhcCCHHHHHHHHHHHH
Q 001161 196 GVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKIS---RHFAGSFFARNVREAEETGRLGDLRQQLLSTL 272 (1134)
Q Consensus 196 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~---~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 272 (1134)
|-+..++.+...+..+. .+...++|++|.||||+|+++++... ...+....+... ....++.++ +++...+
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~---~~~~~id~i-r~li~~~ 74 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE---GENIGIDDI-RTIKDFL 74 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS---SSCBCHHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC---cCCCCHHHH-HHHHHHH
Confidence 44556777777776544 67889999999999999999987531 112223333110 011233232 2233322
Q ss_pred hcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh--HHHHHHhcCcCCCCCCcEEEEEeCCh-hhhhhcCCCeEEEec
Q 001161 273 LNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP--RQIKILVGRLDLLASGSRIIITTRDR-QVLANCGVDEVYQMK 349 (1134)
Q Consensus 273 ~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIiiTTR~~-~~~~~~~~~~~~~l~ 349 (1134)
.... ..+++-++|+|+++.. ...+.|...+....+.+.+|++|.+. .+.+..... +++++
T Consensus 75 ~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~ 137 (305)
T 2gno_A 75 NYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVV 137 (305)
T ss_dssp TSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEE
T ss_pred hhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCC
Confidence 1110 1234568899999754 34556665555446677877776544 444444334 89999
Q ss_pred CCCHHhHHHHHHHhh
Q 001161 350 ELVHDDALRLFSRHA 364 (1134)
Q Consensus 350 ~L~~~ea~~Lf~~~a 364 (1134)
+++.++..+.+...+
T Consensus 138 ~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 138 VNVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999988776
No 235
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.30 E-value=0.0019 Score=69.15 Aligned_cols=153 Identities=14% Similarity=0.153 Sum_probs=80.3
Q ss_pred CccCCccccchhHHHHHHhhcc--C-------C-CCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhc
Q 001161 189 SENEDLVGVRLPMKEIESLLRT--G-------S-TNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEET 258 (1134)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~L~~--~-------~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 258 (1134)
...++++|.+....++.++... . + .-.+-+.|+|++|.||||||++++..... ..+.+.. ......
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~~-~~~~~~ 88 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITASG-SDFVEM 88 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEH-HHHHHS
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---CEEEeeH-HHHHHH
Confidence 3445677877666665544321 0 0 11123899999999999999999987642 2222211 111110
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhh-cCCcceEEEecCCChH----------------HHHHHhcCcCCC
Q 001161 259 GRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL-TRKKVLIVFDDVNHPR----------------QIKILVGRLDLL 321 (1134)
Q Consensus 259 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~ 321 (1134)
. .... ......+.+.. ...+.++++|+++... .+..+...+...
T Consensus 89 ~-~~~~------------------~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~ 149 (254)
T 1ixz_A 89 F-VGVG------------------AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 149 (254)
T ss_dssp C-TTHH------------------HHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTC
T ss_pred H-hhHH------------------HHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCC
Confidence 0 0000 00011122222 2346799999984321 122332222211
Q ss_pred --CCCcEEEEEeCChhhhhhc-----CCCeEEEecCCCHHhHHHHHHHhh
Q 001161 322 --ASGSRIIITTRDRQVLANC-----GVDEVYQMKELVHDDALRLFSRHA 364 (1134)
Q Consensus 322 --~~gsrIiiTTR~~~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1134)
.....++.||.....+... ..+..++++..+.++-.+++..++
T Consensus 150 ~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 150 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp CTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 1223455566666553321 345678999999998888887765
No 236
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.29 E-value=9.2e-05 Score=71.62 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=33.9
Q ss_pred CccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 193 DLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 193 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
.++|++..++++.+.+..-.....-|.|+|.+|.|||++|+++++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 57899999988888765421222348899999999999999987653
No 237
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.27 E-value=0.00031 Score=75.91 Aligned_cols=49 Identities=22% Similarity=0.178 Sum_probs=34.7
Q ss_pred CCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 192 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
+.++|.+..+.++.+.+.........|.|+|.+|+|||++|+++++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4689999998888766643222234588999999999999999997643
No 238
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.26 E-value=0.0031 Score=68.99 Aligned_cols=29 Identities=34% Similarity=0.563 Sum_probs=24.6
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
..+.+.++|++|+|||+||+++++.....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34678999999999999999999987433
No 239
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.22 E-value=0.0005 Score=75.69 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=37.7
Q ss_pred CCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 192 EDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
+.++|++..+.++.+.+..-......|.|+|.+|+|||++|+++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 358999999999888775532233458899999999999999998754
No 240
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.19 E-value=0.0004 Score=67.47 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=24.4
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
....++|+|..|.|||||++.++.....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4467999999999999999999987654
No 241
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.18 E-value=0.0059 Score=71.35 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=39.0
Q ss_pred ccCCccccchhHHHHHHhh---ccCCCCeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 190 ENEDLVGVRLPMKEIESLL---RTGSTNVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~L---~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
..+.++|.+..++.+..++ ..+....+-+.++|++|.|||++|+++++.+.
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred chhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 3478999999887665544 33333345689999999999999999998765
No 242
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.17 E-value=0.0053 Score=66.58 Aligned_cols=175 Identities=13% Similarity=0.127 Sum_probs=89.6
Q ss_pred CccCCccccchhHHHHHHhhcc--C-------C-CCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhc
Q 001161 189 SENEDLVGVRLPMKEIESLLRT--G-------S-TNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEET 258 (1134)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~L~~--~-------~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 258 (1134)
...++++|.+..++++.++... . + .-.+-+.|+|++|.||||||++++..... ..+.+.. ......
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~~-~~~~~~ 112 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITASG-SDFVEM 112 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEH-HHHHHS
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEecH-HHHHHH
Confidence 3456788888777666554321 0 0 11123899999999999999999987642 2233321 111110
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhh-cCCcceEEEecCCCh----------------HHHHHHhcCcCCC
Q 001161 259 GRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL-TRKKVLIVFDDVNHP----------------RQIKILVGRLDLL 321 (1134)
Q Consensus 259 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~----------------~~l~~l~~~~~~~ 321 (1134)
. ..... .....+.+.. ...+.++|+|+++.. ..+..+...+...
T Consensus 113 ~-~~~~~------------------~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg 173 (278)
T 1iy2_A 113 F-VGVGA------------------ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 173 (278)
T ss_dssp T-TTHHH------------------HHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTC
T ss_pred H-hhHHH------------------HHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCC
Confidence 0 00000 0011111222 235679999998422 1123333332221
Q ss_pred C--CCcEEEEEeCChhhhhh-----cCCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCCh
Q 001161 322 A--SGSRIIITTRDRQVLAN-----CGVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVP 389 (1134)
Q Consensus 322 ~--~gsrIiiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 389 (1134)
. ....++.||.....+.. ...+..++++..+.++-.+++..++-+.....+. ....++..+.|..
T Consensus 174 ~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~---~~~~la~~~~G~~ 245 (278)
T 1iy2_A 174 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 245 (278)
T ss_dssp CTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc---CHHHHHHHcCCCC
Confidence 1 22344556666554321 1345688999999998888888766322111111 1234566666654
No 243
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.06 E-value=0.0023 Score=78.68 Aligned_cols=171 Identities=16% Similarity=0.166 Sum_probs=97.6
Q ss_pred cCCccccchhHHHHHHhhcc-----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhc-
Q 001161 191 NEDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEET- 258 (1134)
Q Consensus 191 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~- 258 (1134)
.+++.|.+..+++|.+.+.. +-...+-|.++|++|.|||+||++++++....| +..+..+....
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~----~~v~~~~l~sk~ 278 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKL 278 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE----EEEEHHHHHSSC
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE----EEEEhHHhhccc
Confidence 45688999999988876532 113456799999999999999999997654332 32221111111
Q ss_pred CCH-HHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChH-------------HHHHHhcCcCCC--C
Q 001161 259 GRL-GDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPR-------------QIKILVGRLDLL--A 322 (1134)
Q Consensus 259 ~~~-~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-------------~l~~l~~~~~~~--~ 322 (1134)
.+- .... ...+.......+.+|+||+++..- .+..+...+... .
T Consensus 279 ~gese~~l--------------------r~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~ 338 (806)
T 3cf2_A 279 AGESESNL--------------------RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (806)
T ss_dssp TTHHHHHH--------------------HHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG
T ss_pred chHHHHHH--------------------HHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc
Confidence 110 0111 122223334678999999986431 122232222211 2
Q ss_pred CCcEEEEEeCChhhhhh-----cCCCeEEEecCCCHHhHHHHHHHhhcCCCCC-CccHHHHHHHHHHHhcCCh
Q 001161 323 SGSRIIITTRDRQVLAN-----CGVDEVYQMKELVHDDALRLFSRHAFEGDHP-HESHTELACKIIKYARGVP 389 (1134)
Q Consensus 323 ~gsrIiiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~GlP 389 (1134)
.+..||.||.....+.. ...+..++++..+.++-.++|..+.-+.... ..+ ..++++.+.|.-
T Consensus 339 ~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 33445666665543221 1245688999999999999998776332211 112 345667777753
No 244
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.05 E-value=0.0031 Score=75.26 Aligned_cols=158 Identities=18% Similarity=0.226 Sum_probs=78.9
Q ss_pred CccccchhHHHHHHhhcc----CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHH
Q 001161 193 DLVGVRLPMKEIESLLRT----GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQL 268 (1134)
Q Consensus 193 ~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 268 (1134)
+++|.+...+.+.+.+.. .......+.++|++|+||||||+.++......|-...+ ......+ .+.......
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~-~~~~~~~---~~~g~~~~~ 157 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISL-GGVRDES---EIRGHRRTY 157 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECC-CC-----------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEe-cccchhh---hhhhHHHHH
Confidence 478888777776554321 11245689999999999999999999887544422211 1110100 000000000
Q ss_pred HHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCChHH------HHHHhcCcCCCC---------------CCcEE
Q 001161 269 LSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHPRQ------IKILVGRLDLLA---------------SGSRI 327 (1134)
Q Consensus 269 l~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~------l~~l~~~~~~~~---------------~gsrI 327 (1134)
. ..........+.. .....-+++||+++.... ...+...+.... ...+|
T Consensus 158 i---------g~~~~~~~~~~~~-a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~i 227 (543)
T 3m6a_A 158 V---------GAMPGRIIQGMKK-AGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLF 227 (543)
T ss_dssp ---------------CHHHHHHT-TCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEE
T ss_pred h---------ccCchHHHHHHHH-hhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEE
Confidence 0 0000111112222 222333888999975422 233333322110 33567
Q ss_pred EEEeCChhhhhh--cCCCeEEEecCCCHHhHHHHHHHhh
Q 001161 328 IITTRDRQVLAN--CGVDEVYQMKELVHDDALRLFSRHA 364 (1134)
Q Consensus 328 iiTTR~~~~~~~--~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1134)
|.||.....+.. .....++++++++.++-.+++..+.
T Consensus 228 I~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 228 IATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred EeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 777765432110 0112468999999999888887754
No 245
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.02 E-value=0.0076 Score=65.05 Aligned_cols=124 Identities=16% Similarity=0.187 Sum_probs=69.0
Q ss_pred EEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhh-cCC
Q 001161 218 LGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL-TRK 296 (1134)
Q Consensus 218 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L-~~k 296 (1134)
++|+|++|.||||||++++...... .+.+... ..... ......+. +..+.+.. ...
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~---~i~i~g~-~l~~~-~~~~~~~~------------------i~~vf~~a~~~~ 103 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLN---FISVKGP-ELLNM-YVGESERA------------------VRQVFQRAKNSA 103 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCE---EEEEETT-TTCSS-TTHHHHHH------------------HHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCC---EEEEEcH-HHHhh-hhhHHHHH------------------HHHHHHHHHhcC
Confidence 9999999999999999999875432 2333210 11000 00111000 11111211 335
Q ss_pred cceEEEecCCChH-------------HHHHHhcCcCC--CCCCcEEEEEeCChhhhhhc-----CCCeEEEecCCCHHhH
Q 001161 297 KVLIVFDDVNHPR-------------QIKILVGRLDL--LASGSRIIITTRDRQVLANC-----GVDEVYQMKELVHDDA 356 (1134)
Q Consensus 297 ~~LlVLDdv~~~~-------------~l~~l~~~~~~--~~~gsrIiiTTR~~~~~~~~-----~~~~~~~l~~L~~~ea 356 (1134)
+.++++|+++... ....+...+.. .....-++.+|....++... ..+..+.++..+.++-
T Consensus 104 p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r 183 (274)
T 2x8a_A 104 PCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADR 183 (274)
T ss_dssp SEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHH
T ss_pred CCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHH
Confidence 6789999986421 11222222211 12334566677776654322 3567889999999999
Q ss_pred HHHHHHhh
Q 001161 357 LRLFSRHA 364 (1134)
Q Consensus 357 ~~Lf~~~a 364 (1134)
.+++..+.
T Consensus 184 ~~il~~~~ 191 (274)
T 2x8a_A 184 LAILKTIT 191 (274)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99998765
No 246
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.97 E-value=0.0022 Score=80.34 Aligned_cols=150 Identities=15% Similarity=0.165 Sum_probs=82.7
Q ss_pred CCccccchhHHHHHHhhccCC-------CCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHH
Q 001161 192 EDLVGVRLPMKEIESLLRTGS-------TNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDL 264 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 264 (1134)
..++|.+..++.+...+.... .....+.++|++|+|||++|+++++.....-...+.+ +..+........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i-~~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRI-DMSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE-EGGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE-echhcccccccc--
Confidence 468999998888887765421 1223699999999999999999998764332222333 222222111110
Q ss_pred HHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh--HHHHHHhcCcCC-----------CCCCcEEEEEe
Q 001161 265 RQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP--RQIKILVGRLDL-----------LASGSRIIITT 331 (1134)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~-----------~~~gsrIiiTT 331 (1134)
.......++ +...-+|+||+++.. +....|...+.. .....+||+||
T Consensus 568 -----------------~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 568 -----------------GGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp --------------------CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred -----------------cchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 001112221 123458999999654 223333322211 12356888888
Q ss_pred CChh-----h----hhh------cCCCeEEEecCCCHHhHHHHHHHhh
Q 001161 332 RDRQ-----V----LAN------CGVDEVYQMKELVHDDALRLFSRHA 364 (1134)
Q Consensus 332 R~~~-----~----~~~------~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1134)
.... + ... ...+.++.+.+++.++..+++....
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 7311 0 000 1234688899999988888776644
No 247
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.93 E-value=0.0035 Score=73.29 Aligned_cols=172 Identities=13% Similarity=0.138 Sum_probs=92.2
Q ss_pred CccCCccccchhHHHHHHhhcc---C-------CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhc
Q 001161 189 SENEDLVGVRLPMKEIESLLRT---G-------STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEET 258 (1134)
Q Consensus 189 ~~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 258 (1134)
...++++|.+..+.++.++... . ..-.+-|.|+|++|.||||||++++...... .+.+. .......
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i~-g~~~~~~ 103 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GSDFVEM 103 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEEE-GGGGTSS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe-hhHHHHh
Confidence 3456788888777776654321 0 0112338999999999999999999876422 22221 1111110
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhc----CCcceEEEecCCCh----------------HHHHHHhcCc
Q 001161 259 GRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLT----RKKVLIVFDDVNHP----------------RQIKILVGRL 318 (1134)
Q Consensus 259 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~----~k~~LlVLDdv~~~----------------~~l~~l~~~~ 318 (1134)
+ . ......++..+. ..+.++++|+++.. ..+..+...+
T Consensus 104 ~-~---------------------g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~L 161 (499)
T 2dhr_A 104 F-V---------------------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 161 (499)
T ss_dssp C-T---------------------THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHG
T ss_pred h-h---------------------hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHh
Confidence 0 0 000111222222 24579999998532 1133343333
Q ss_pred CCC--CCCcEEEEEeCChhhhhhc-----CCCeEEEecCCCHHhHHHHHHHhhcCCCCCCccHHHHHHHHHHHhcCCh
Q 001161 319 DLL--ASGSRIIITTRDRQVLANC-----GVDEVYQMKELVHDDALRLFSRHAFEGDHPHESHTELACKIIKYARGVP 389 (1134)
Q Consensus 319 ~~~--~~gsrIiiTTR~~~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 389 (1134)
..+ ..+..++.||.....+... ..+..+.++..+.++-.+++..++-+.....+. ....++..+.|..
T Consensus 162 dg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv---~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 162 DGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 236 (499)
T ss_dssp GGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS---TTHHHHTTSCSCC
T ss_pred cccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH---HHHHHHHhcCCCC
Confidence 222 2344566677766553321 234688999999999999988766322111111 1334566666654
No 248
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.90 E-value=0.0037 Score=78.22 Aligned_cols=152 Identities=18% Similarity=0.225 Sum_probs=86.5
Q ss_pred ccCCccccchhHHHHHHhhcc-----------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhc
Q 001161 190 ENEDLVGVRLPMKEIESLLRT-----------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEET 258 (1134)
Q Consensus 190 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 258 (1134)
..++++|.+..++++.+++.. +-.....|.|+|++|.||||||++++......| +.+ +.......
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v-~~~~l~~~ 277 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLI-NGPEIMSK 277 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEE-EHHHHSSS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEE-EchHhhhh
Confidence 346799999999999887753 223345799999999999999999987654333 222 11111100
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcCCcceEEEecCCCh----------------HHHHHHhcCcCCCC
Q 001161 259 GRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTRKKVLIVFDDVNHP----------------RQIKILVGRLDLLA 322 (1134)
Q Consensus 259 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~l~~l~~~~~~~~ 322 (1134)
. ...... .....+.......+.++++|+++.. .++-.+..... ..
T Consensus 278 ~-~g~~~~-----------------~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~ 338 (806)
T 1ypw_A 278 L-AGESES-----------------NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QR 338 (806)
T ss_dssp S-TTHHHH-----------------HHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TT
T ss_pred h-hhhHHH-----------------HHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-cc
Confidence 0 000000 0111222223346789999998421 11222222221 12
Q ss_pred CCcEEEEEeCChhhhhhc-----CCCeEEEecCCCHHhHHHHHHHhh
Q 001161 323 SGSRIIITTRDRQVLANC-----GVDEVYQMKELVHDDALRLFSRHA 364 (1134)
Q Consensus 323 ~gsrIiiTTR~~~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1134)
.+..+|.||.....+... .....+.+...+.++-.+++..++
T Consensus 339 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp SCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred ccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 345666676654332211 233567888889999989888765
No 249
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.78 E-value=0.0047 Score=70.33 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.3
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHh
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
..+.++|++|+|||++|+++++...
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588999999999999999998763
No 250
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=96.62 E-value=0.0014 Score=59.07 Aligned_cols=63 Identities=8% Similarity=0.016 Sum_probs=47.6
Q ss_pred CCccEEEcccccccccchHHHHHHHHhhCCCceEecCCCCCCCcchHHHHHHHHhcccEEEEecCCcccchhhHHHHHHH
Q 001161 20 VQYDVFLSFRGEDTRENFTSHLYSALSRESIETFIDDDLRRGDEISQSLLDAIEASSISIIVFSERYASSRWCLDELLKI 99 (1134)
Q Consensus 20 ~~~dvFis~~~~D~r~~~~~~l~~~l~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~~El~~~ 99 (1134)
.+|.+||||+.+|.++ .|...|.+.|+..- | +.|+.|...|++.++....|+||..|+..+
T Consensus 3 ~~~~lFISh~~~d~~~----~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVEDYR----VFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSHHHH----HHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHhHHH----HHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 5789999999999333 34444446666433 2 578889999999999999999999999876
Q ss_pred HH
Q 001161 100 LE 101 (1134)
Q Consensus 100 ~~ 101 (1134)
.+
T Consensus 64 ~~ 65 (111)
T 1eiw_A 64 RK 65 (111)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 251
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.50 E-value=0.0041 Score=77.93 Aligned_cols=48 Identities=15% Similarity=0.215 Sum_probs=37.5
Q ss_pred CCccccchhHHHHHHhhccCC-------CCeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 192 EDLVGVRLPMKEIESLLRTGS-------TNVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
..++|.+..++.+...+.... .....+.++|++|+|||++|+++++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 458899998888877664311 123478999999999999999999877
No 252
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.38 E-value=0.002 Score=65.02 Aligned_cols=13 Identities=8% Similarity=0.097 Sum_probs=5.4
Q ss_pred cccccCcceeecC
Q 001161 841 LGLLSLVTELHLE 853 (1134)
Q Consensus 841 l~~l~~L~~L~Ls 853 (1134)
+..-+.|++|+|+
T Consensus 122 L~~N~tL~~L~L~ 134 (197)
T 1pgv_A 122 TLVTQSIVEFKAD 134 (197)
T ss_dssp TTTTCCCSEEECC
T ss_pred HhhCCceeEEECC
Confidence 3333344444444
No 253
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.31 E-value=0.0072 Score=60.62 Aligned_cols=131 Identities=14% Similarity=0.041 Sum_probs=64.4
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHh--cCCCCC---------CCccc
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLL--NDGNVK---------NFPNI 284 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~--~~~~~~---------~~~~~ 284 (1134)
..|.|++-.|.||||.|-.++-+...+=-.+.++.-+... ...+-..+.+.+.-.+. +..... .....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 4566777777999999999888765554344444222110 11222233333200000 000000 00112
Q ss_pred cHHHHHHhhcCCcc-eEEEecCCC--------hHHHHHHhcCcCCCCCCcEEEEEeCChhhhhhcCCCeEEEecC
Q 001161 285 DLNFQSKKLTRKKV-LIVFDDVNH--------PRQIKILVGRLDLLASGSRIIITTRDRQVLANCGVDEVYQMKE 350 (1134)
Q Consensus 285 ~~~~l~~~L~~k~~-LlVLDdv~~--------~~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~~~~~~~~l~~ 350 (1134)
.....++.+.+.+| |||||++.. .+++-.+.. .......||+|+|...-.-.--.+.+-++..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~---~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~ 179 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALN---ARPGHQTVIITGRGCHRDILDLADTVSELRP 179 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHH---TSCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHH---hCcCCCEEEEECCCCcHHHHHhCcceeeecc
Confidence 23445555655554 999999732 233323332 2356778999999873211111345555554
No 254
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.25 E-value=0.013 Score=64.57 Aligned_cols=71 Identities=17% Similarity=0.071 Sum_probs=47.6
Q ss_pred ccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHH
Q 001161 194 LVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLST 271 (1134)
Q Consensus 194 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 271 (1134)
..|...-...|.+++ .+-....++.|.|.+|+||||+|..++.....+-..++|+. -.....++...++..
T Consensus 48 ~~~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s------lE~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 48 ITGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS------LEMGKKENIKRLIVT 118 (315)
T ss_dssp CCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE------SSSCHHHHHHHHHHH
T ss_pred CCCccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE------CCCCHHHHHHHHHHH
Confidence 345555556666666 33345578999999999999999999876654435566662 334556666666554
No 255
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.22 E-value=0.0078 Score=63.11 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=31.7
Q ss_pred HHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 202 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 202 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
..+.+++..+-..-.+++|.|.+|.|||||++.++......-..+.|+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 345555432222346899999999999999999987654433344554
No 256
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.21 E-value=0.008 Score=66.39 Aligned_cols=72 Identities=15% Similarity=0.095 Sum_probs=48.2
Q ss_pred ccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHH
Q 001161 194 LVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTL 272 (1134)
Q Consensus 194 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 272 (1134)
+.|...-...|.+.+. +-....++.|.|.+|+||||+|..++..+..+=..++|+ +-.....++...++...
T Consensus 26 ~~gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f------SlEms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 26 VTGIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF------SLEMSAEQLALRALSDL 97 (338)
T ss_dssp CCSBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE------ESSSCHHHHHHHHHHHH
T ss_pred cCcccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE------eCCCCHHHHHHHHHHHh
Confidence 4555555666666663 334456899999999999999999988765533345555 33455666777766543
No 257
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.20 E-value=0.0053 Score=63.79 Aligned_cols=46 Identities=24% Similarity=0.130 Sum_probs=31.3
Q ss_pred HHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeee
Q 001161 202 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFAR 250 (1134)
Q Consensus 202 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1134)
..|.+++..+-..-.+++|+|.+|+||||||+.++. . .-..++|+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~ 52 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVD 52 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEE
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEE
Confidence 344555532324456899999999999999999987 2 223455653
No 258
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.96 E-value=0.0052 Score=66.64 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=21.8
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
..+++.|+|++|+|||+||.+++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3456889999999999999999876
No 259
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.91 E-value=0.017 Score=63.32 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=33.3
Q ss_pred HHHHHHhhccCCC-CeeEEEEEecCCChHHHHHHHHHHHHh-ccCCceeee
Q 001161 201 MKEIESLLRTGST-NVYKLGIWGIGGIGKTTIAGAIFSKIS-RHFAGSFFA 249 (1134)
Q Consensus 201 ~~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~ 249 (1134)
++.+.+++..... ..+.+.|+|++|+|||+||+++++... .+-..+.++
T Consensus 137 ~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 137 FSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp HHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 3444455543222 246789999999999999999999876 543344444
No 260
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.88 E-value=0.033 Score=55.19 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.6
Q ss_pred eEEEEEecCCChHHHHHHHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
.+|+|.|++|+||||+|+.+ .+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47899999999999999998 44
No 261
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.82 E-value=0.029 Score=61.16 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=32.8
Q ss_pred chhHHHHHHhhccC------CCCeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 198 RLPMKEIESLLRTG------STNVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 198 ~~~~~~l~~~L~~~------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
+.-.++|.+.+... .....+|+|+|.+|+||||++..++..++..
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 34455566666432 1345799999999999999999999877654
No 262
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.81 E-value=0.032 Score=62.03 Aligned_cols=55 Identities=18% Similarity=0.103 Sum_probs=39.7
Q ss_pred ccchhHHHHHHhhc-cCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeee
Q 001161 196 GVRLPMKEIESLLR-TGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFAR 250 (1134)
Q Consensus 196 Gr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1134)
....-..+|...|. .+-..-+++.|+|++|+||||||..++......-..++|+.
T Consensus 41 ~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 41 VIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp EECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34455567777775 33345579999999999999999999987655434466763
No 263
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.77 E-value=0.03 Score=70.92 Aligned_cols=50 Identities=18% Similarity=0.345 Sum_probs=38.4
Q ss_pred CCccccchhHHHHHHhhccC-------CCCeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 192 EDLVGVRLPMKEIESLLRTG-------STNVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
..++|.+..++.+...+... ......+.|+|++|+|||++|+++++....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35789999888887766432 112357899999999999999999987643
No 264
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.72 E-value=0.037 Score=58.42 Aligned_cols=38 Identities=21% Similarity=0.151 Sum_probs=29.2
Q ss_pred HHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHH
Q 001161 201 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 201 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
...+..++....+....|.++|++|.|||.+|.++++.
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 34466777644244557999999999999999999875
No 265
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.69 E-value=0.0057 Score=68.25 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=39.4
Q ss_pred cCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 191 NEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 191 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
.+.++|++..++.+...+..+ .-+.++|++|+|||+||+++++.....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred ccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 356899999999888877643 248899999999999999999876543
No 266
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.67 E-value=0.0058 Score=61.62 Aligned_cols=38 Identities=3% Similarity=0.043 Sum_probs=20.2
Q ss_pred CCCCCCEEeccCCC---CC-----CCccccccccCcceeecCCCCc
Q 001161 820 GLQNLRDLNLNDCG---IT-----ELPESLGLLSLVTELHLEGNNF 857 (1134)
Q Consensus 820 ~l~~L~~L~Ls~n~---l~-----~lp~~l~~l~~L~~L~Ls~n~l 857 (1134)
.-+.|++|+|++|. +. .+...+..-++|+.|+++.|.+
T Consensus 124 ~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 124 VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 33456666666542 23 1334455556677777766544
No 267
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.65 E-value=0.014 Score=54.93 Aligned_cols=54 Identities=26% Similarity=0.305 Sum_probs=41.4
Q ss_pred CEEeccCCCCC--CCccccccccCcceeecCCCCcccccc-chhCCCCCcEEEeccccC
Q 001161 825 RDLNLNDCGIT--ELPESLGLLSLVTELHLEGNNFERIPE-SIIQLSNLEWLFIRYCER 880 (1134)
Q Consensus 825 ~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~~ 880 (1134)
..++.++++++ .+|..+ .++|+.|+|++|+|+.+|. .|..+++|+.|+|++|+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 36777888887 787643 3478888888888888875 467788888888888864
No 268
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.55 E-value=0.085 Score=52.56 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=21.5
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
.++|+|+.|.|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998664
No 269
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.48 E-value=0.0081 Score=62.20 Aligned_cols=111 Identities=14% Similarity=0.003 Sum_probs=58.1
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCC--CCCccccHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNV--KNFPNIDLNFQSK 291 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~--~~~~~~~~~~l~~ 291 (1134)
...++.|+|..|.||||+|..++.+...+-..+.++...... + +.. ++.+.+...... .....+....+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~--r-~~~----~i~srlG~~~~~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT--R-SIR----NIQSRTGTSLPSVEVESAPEILNYIMS 83 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG--G-GCS----SCCCCCCCSSCCEEESSTHHHHHHHHS
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc--h-HHH----HHHHhcCCCccccccCCHHHHHHHHHH
Confidence 346889999999999999999998876654444444211110 1 110 111111111000 0111222333343
Q ss_pred hhcCC-cceEEEecCCC--hHHHHHHhcCcCCCCCCcEEEEEeCCh
Q 001161 292 KLTRK-KVLIVFDDVNH--PRQIKILVGRLDLLASGSRIIITTRDR 334 (1134)
Q Consensus 292 ~L~~k-~~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIiiTTR~~ 334 (1134)
.+.+. .-+||+|.+.. .++++.+.... ..|-.||+|-++.
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~---~~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANILA---ENGFVVIISGLDK 126 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHHHH---HTTCEEEEECCSB
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHHHH---hCCCeEEEEeccc
Confidence 33334 44999999853 34444443211 1378899999854
No 270
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.43 E-value=0.09 Score=57.11 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=24.5
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
..++++|+|.+|+||||++..++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999987763
No 271
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.39 E-value=0.15 Score=56.87 Aligned_cols=156 Identities=10% Similarity=-0.020 Sum_probs=96.8
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHh-ccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHh
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKIS-RHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKK 292 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~ 292 (1134)
-.++..++|..|.||++.|+++...+. ..|+....+ .. ....++.++...+-. .-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~-~~---~~~~~~~~l~~~~~~--------------------~p 72 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTF-SI---DPNTDWNAIFSLCQA--------------------MS 72 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEE-EC---CTTCCHHHHHHHHHH--------------------HH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEE-Ee---cCCCCHHHHHHHhcC--------------------cC
Confidence 456889999999999999999988654 344322111 11 112344444333211 11
Q ss_pred hcCCcceEEEecCCC---hHHHHHHhcCcCCCCCCcEEEEEeCC-------hhhhhhc-CCCeEEEecCCCHHhHHHHHH
Q 001161 293 LTRKKVLIVFDDVNH---PRQIKILVGRLDLLASGSRIIITTRD-------RQVLANC-GVDEVYQMKELVHDDALRLFS 361 (1134)
Q Consensus 293 L~~k~~LlVLDdv~~---~~~l~~l~~~~~~~~~gsrIiiTTR~-------~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~ 361 (1134)
+-+++-++|+|+++. .+..+.|...+....+++.+|++|.. ..+.... ....+++..+++.++..+.+.
T Consensus 73 lf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 73 LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp HCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred CccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 234556888999865 34556666555555677887776643 2344332 334688999999999988887
Q ss_pred HhhcCCCCCCccHHHHHHHHHHHhcCChHHHHHH
Q 001161 362 RHAFEGDHPHESHTELACKIIKYARGVPLALEVL 395 (1134)
Q Consensus 362 ~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 395 (1134)
..+-... ..-..+.+..+++.++|.+.++...
T Consensus 153 ~~~~~~g--~~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 153 ARAKQLN--LELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHHTT--CEECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHcC--CCCCHHHHHHHHHHhchHHHHHHHH
Confidence 7663221 1223566788899999988777653
No 272
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.38 E-value=0.043 Score=63.39 Aligned_cols=71 Identities=17% Similarity=0.073 Sum_probs=45.5
Q ss_pred ccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHH
Q 001161 194 LVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLST 271 (1134)
Q Consensus 194 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 271 (1134)
..|...-...|.+++. +-....++.|.|.+|+||||+|..++.....+-..++|+ +-.....++...++..
T Consensus 177 ~~gi~TG~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f------SlEms~~ql~~R~~~~ 247 (444)
T 3bgw_A 177 ITGVPSGFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH------SLEMGKKENIKRLIVT 247 (444)
T ss_dssp CCSBCCSCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE------CSSSCTTHHHHHHHHH
T ss_pred CCCcCCCcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE------ECCCCHHHHHHHHHHH
Confidence 3445555556666662 334556899999999999999999998766543345555 2233444555555543
No 273
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.28 E-value=0.017 Score=70.98 Aligned_cols=150 Identities=17% Similarity=0.220 Sum_probs=78.1
Q ss_pred CCccccchhHHHHHHhhccC-----------CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCC
Q 001161 192 EDLVGVRLPMKEIESLLRTG-----------STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGR 260 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 260 (1134)
.++.|.+...++|.+.+... ....+-|.++|++|.|||.+|++++......| +.....
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f----~~v~~~------- 545 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF----ISIKGP------- 545 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE----EECCHH-------
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce----EEeccc-------
Confidence 45678888888887765431 12345588999999999999999998764332 211110
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccccHHHHHHhh-cCCcceEEEecCCChH----------------HHHHHhcCcCCCCC
Q 001161 261 LGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL-TRKKVLIVFDDVNHPR----------------QIKILVGRLDLLAS 323 (1134)
Q Consensus 261 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~~~ 323 (1134)
++++ ...... +..+..+.+.. +..+.+|++|+++..- .+..|+..++....
T Consensus 546 ------~l~s-----~~vGes-e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 546 ------ELLT-----MWFGES-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp ------HHHT-----TTCSSC-HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred ------hhhc-----cccchH-HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 1111 111111 11222222222 4578999999986320 13334433332222
Q ss_pred --CcEEEEEeCChhhh-----hhcCCCeEEEecCCCHHhHHHHHHHhh
Q 001161 324 --GSRIIITTRDRQVL-----ANCGVDEVYQMKELVHDDALRLFSRHA 364 (1134)
Q Consensus 324 --gsrIiiTTR~~~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1134)
+.-||-||.....+ ..-..+..+.++..+.++-.++|..+.
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 22333355444332 111346788888888888788887765
No 274
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.26 E-value=0.052 Score=59.68 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=25.7
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
...++|+|+|.+|+||||++..++..++..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 346789999999999999999999877654
No 275
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.24 E-value=0.094 Score=60.80 Aligned_cols=72 Identities=19% Similarity=0.107 Sum_probs=46.5
Q ss_pred ccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc-CCceeeeeechhHhhcCCHHHHHHHHHHHH
Q 001161 194 LVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH-FAGSFFARNVREAEETGRLGDLRQQLLSTL 272 (1134)
Q Consensus 194 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 272 (1134)
..|...-...|.+++ .+-....++.|.|.+|+||||+|..++..+... -..++|+ +-.....++...++...
T Consensus 180 ~~~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~------slE~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 180 VAGVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIY------SLEMPAAQLTLRMMCSE 252 (444)
T ss_dssp ---CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE------ESSSCHHHHHHHHHHHH
T ss_pred CCcccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE------ECCCCHHHHHHHHHHHH
Confidence 345555556666666 333455689999999999999999999876543 2345565 23345567777766544
No 276
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.22 E-value=0.075 Score=59.47 Aligned_cols=57 Identities=23% Similarity=0.149 Sum_probs=40.6
Q ss_pred ccccchhHHHHHHhhc-cCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeee
Q 001161 194 LVGVRLPMKEIESLLR-TGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFAR 250 (1134)
Q Consensus 194 ~vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1134)
..+...-...|..+|. .+-..-+++.|.|.+|+||||||..++......-..++|+.
T Consensus 52 ~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 52 VQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 3445555667777775 23234568999999999999999999887654444667774
No 277
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.21 E-value=0.054 Score=63.06 Aligned_cols=69 Identities=14% Similarity=0.144 Sum_probs=43.0
Q ss_pred cccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccC-CceeeeeechhHhhcCCHHHHHHHHHH
Q 001161 195 VGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF-AGSFFARNVREAEETGRLGDLRQQLLS 270 (1134)
Q Consensus 195 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~ll~ 270 (1134)
.|...-...|.+.+ .+-....++.|.|.+|+||||+|..++..+.... ..++|+. ......++...++.
T Consensus 184 ~~i~tG~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s------~E~s~~~l~~r~~~ 253 (454)
T 2r6a_A 184 TGIPTGFTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS------LEMSAQQLVMRMLC 253 (454)
T ss_dssp CSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE------SSSCHHHHHHHHHH
T ss_pred CCCCCCcHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CCCCHHHHHHHHHH
Confidence 34444445555555 2334456899999999999999999998765432 2455552 22344555555543
No 278
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.16 E-value=0.056 Score=61.66 Aligned_cols=29 Identities=28% Similarity=0.300 Sum_probs=25.2
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
...+|.++|.+|+||||++..++..++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36799999999999999999999876654
No 279
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.09 E-value=0.0085 Score=74.93 Aligned_cols=151 Identities=17% Similarity=0.208 Sum_probs=82.7
Q ss_pred cCCccccchhHHHHHHhhccC-----------CCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcC
Q 001161 191 NEDLVGVRLPMKEIESLLRTG-----------STNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETG 259 (1134)
Q Consensus 191 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 259 (1134)
..+++|.+...+.+.+.+... -...+.+.++|++|.||||||++++......|-. +. .......
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~---v~-~~~l~~~- 550 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS---IK-GPELLTM- 550 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC---CC-CSSSTTC-
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEE---Ee-chHhhhh-
Confidence 456789999988888876531 1233568899999999999999999887544321 10 0000000
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhh-cCCcceEEEecCCCh----------------HHHHHHhcCcCCCC
Q 001161 260 RLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL-TRKKVLIVFDDVNHP----------------RQIKILVGRLDLLA 322 (1134)
Q Consensus 260 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~----------------~~l~~l~~~~~~~~ 322 (1134)
.. ...+.....+.+.. ...+.+|++|+++.. ..+..++..+....
T Consensus 551 -----------------~~-g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~ 612 (806)
T 1ypw_A 551 -----------------WF-GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp -----------------CT-TTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC---
T ss_pred -----------------hc-CccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc
Confidence 00 00011111122221 234578899997532 11345555554322
Q ss_pred --CCcEEEEEeCChhhhhhc-----CCCeEEEecCCCHHhHHHHHHHhh
Q 001161 323 --SGSRIIITTRDRQVLANC-----GVDEVYQMKELVHDDALRLFSRHA 364 (1134)
Q Consensus 323 --~gsrIiiTTR~~~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1134)
.+..||.||...+.+... ..+..+.++..+.++-.+++..+.
T Consensus 613 ~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp ---CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred ccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 234456666544332211 123466778888888888887765
No 280
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.98 E-value=0.17 Score=54.88 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=27.1
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
..+++++|.+|+||||++..++..+...-..+.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 57899999999999999999998776543333433
No 281
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.97 E-value=0.038 Score=61.68 Aligned_cols=56 Identities=18% Similarity=0.102 Sum_probs=40.0
Q ss_pred cccchhHHHHHHhhc-cCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeee
Q 001161 195 VGVRLPMKEIESLLR-TGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFAR 250 (1134)
Q Consensus 195 vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1134)
.+...-...|..+|. .+-..-+++.|+|.+|+||||||..++......-..++|+.
T Consensus 40 ~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 40 SVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp CEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 344455667777775 33345578999999999999999999876655444566664
No 282
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.95 E-value=0.0082 Score=59.70 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=18.7
Q ss_pred eeEEEEEecCCChHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAI 235 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~ 235 (1134)
..+++|+|+.|.|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999963
No 283
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=94.94 E-value=0.084 Score=51.03 Aligned_cols=103 Identities=20% Similarity=0.166 Sum_probs=72.6
Q ss_pred cEEEcc--------------cccccccchHHHHHHHHhhCCCceEecC-CCC-------C-CCcchHHHHHHHHhcccEE
Q 001161 23 DVFLSF--------------RGEDTRENFTSHLYSALSRESIETFIDD-DLR-------R-GDEISQSLLDAIEASSISI 79 (1134)
Q Consensus 23 dvFis~--------------~~~D~r~~~~~~l~~~l~~~g~~~~~d~-~~~-------~-g~~~~~~~~~~i~~s~~~i 79 (1134)
-+|+.| +.+| .....-|.+.-....+-.|.|. |.. . -+.|.+.|.++|..|+.+|
T Consensus 7 ~~YvaF~~~~~~~~~~~~~~a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vI 84 (189)
T 3hyn_A 7 ANYSAFYVSEPFSESNLGANSTHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNII 84 (189)
T ss_dssp EEEEECCCCSSCCTTSTTGGGSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEE
T ss_pred CcEEEEeccCcccccccCCCccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEE
Confidence 478888 4566 6667778777777777667775 442 2 3568899999999999999
Q ss_pred EEecCCcccchhhHHHHHHHHHhhhccCcEEEeEEeeec-ccccccccccch
Q 001161 80 IVFSERYASSRWCLDELLKILECKKEYAQIVIPACYRVD-PSHVRKQTGNFG 130 (1134)
Q Consensus 80 ~v~S~~y~~s~wc~~El~~~~~~~~~~~~~v~pvf~~v~-p~~vr~q~g~~~ 130 (1134)
+++|++...|.|-.+|+..+.. +.+..||-|.-+-+ .++++...|++.
T Consensus 85 llIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~~~~~~~i~~~~g~~~ 133 (189)
T 3hyn_A 85 LFLSSITANSRALREEMNYGIG---TKGLPVIVIYPDYDKKSDIVDSNGNFK 133 (189)
T ss_dssp EECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETTCCSGGGTBCTTSCBC
T ss_pred EEEecCccccchhHHHHHHHHH---hcCCcEEEEECCccccchhhhccccch
Confidence 9999999999999999988762 23445666653322 224444445433
No 284
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.92 E-value=0.026 Score=63.02 Aligned_cols=110 Identities=14% Similarity=0.076 Sum_probs=64.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccCCceee-eeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhc
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFF-ARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLT 294 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~ 294 (1134)
.+++|+|+.|.||||+.+.+...+.......++ +.+..+ ...... .....+.............+...|.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e----~~~~~~-----~~~v~q~~~~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE----FVHESK-----KCLVNQREVHRDTLGFSEALRSALR 194 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC----SCCCCS-----SSEEEEEEBTTTBSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH----hhhhcc-----ccceeeeeeccccCCHHHHHHHHhh
Confidence 489999999999999999998876554333332 211100 000000 0000000000111223457888889
Q ss_pred CCcceEEEecCCChHHHHHHhcCcCCCCCCcEEEEEeCChhhh
Q 001161 295 RKKVLIVFDDVNHPRQIKILVGRLDLLASGSRIIITTRDRQVL 337 (1134)
Q Consensus 295 ~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIiiTTR~~~~~ 337 (1134)
..+=+|++|.+.+.+.++.+.... ..|..||+|+.+...+
T Consensus 195 ~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 195 EDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 999999999998877766554432 3466788888776544
No 285
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.90 E-value=0.023 Score=58.50 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=24.7
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
....+|+|+|+.|.|||||++.++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999999988765
No 286
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.87 E-value=0.051 Score=57.48 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=21.4
Q ss_pred CeeEEEEEecCCChHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
.-.+++|+|+.|.|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 446899999999999999999885
No 287
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.82 E-value=0.012 Score=58.78 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=22.3
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHh
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
.+|.|.|++|.||||+|++++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998754
No 288
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.80 E-value=0.19 Score=57.26 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=25.2
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
..++|+++|.+|+||||++..++..++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36799999999999999999999877654
No 289
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.74 E-value=0.019 Score=64.85 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=34.4
Q ss_pred ccccchhHHHHHHhhc-------------cCCCCeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 194 LVGVRLPMKEIESLLR-------------TGSTNVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 194 ~vGr~~~~~~l~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
++|.+..++.+...+. ......+.|.++|++|+|||++|+++++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5777777777666552 1111335689999999999999999998763
No 290
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.74 E-value=0.03 Score=59.71 Aligned_cols=112 Identities=11% Similarity=0.086 Sum_probs=62.6
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhh
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL 293 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L 293 (1134)
...+++|+|+.|.|||||++.+...+...+.+.+++.... . .+.... .. .+..+.....+.......+...|
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-i--~~~~~~---~~--~~v~q~~~gl~~~~l~~~la~aL 95 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-I--EYVFKH---KK--SIVNQREVGEDTKSFADALRAAL 95 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-C--CSCCCC---SS--SEEEEEEBTTTBSCHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-c--eeecCC---cc--eeeeHHHhCCCHHHHHHHHHHHH
Confidence 4468999999999999999999886655444555442210 0 000000 00 00000000001122345566677
Q ss_pred cCCcceEEEecCCChHHHHHHhcCcCCCCCCcEEEEEeCChhh
Q 001161 294 TRKKVLIVFDDVNHPRQIKILVGRLDLLASGSRIIITTRDRQV 336 (1134)
Q Consensus 294 ~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIiiTTR~~~~ 336 (1134)
..++=+|++|...+.+....+.... ..|..|++||.+...
T Consensus 96 ~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 96 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred hhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 7778899999997666554443321 346678888876543
No 291
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.56 E-value=0.044 Score=55.97 Aligned_cols=43 Identities=23% Similarity=0.280 Sum_probs=30.9
Q ss_pred chhHHHHHHhhcc-CCCCeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 198 RLPMKEIESLLRT-GSTNVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 198 ~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
++.++++.+.+.. ......+|+|.|..|.||||+++.+...+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445555554433 224457899999999999999999988664
No 292
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.55 E-value=0.057 Score=58.25 Aligned_cols=49 Identities=18% Similarity=0.146 Sum_probs=34.0
Q ss_pred HHHHHHhhc----cCCCCeeEEEEEecCCChHHHHHHHHHHHHhccC--Cceeeee
Q 001161 201 MKEIESLLR----TGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF--AGSFFAR 250 (1134)
Q Consensus 201 ~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~ 250 (1134)
..+|...|. .+-..- ++.|+|++|+||||||.+++.....++ ..++|++
T Consensus 11 i~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 11 IPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp CHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 345556665 222333 689999999999999999887765543 3567764
No 293
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.54 E-value=0.018 Score=57.10 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=22.2
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHh
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
.+|+|.|++|+||||+|+.++.++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988764
No 294
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.51 E-value=0.07 Score=54.89 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=24.2
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
.+.++|.|.|++|.||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999998765
No 295
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.48 E-value=0.12 Score=52.87 Aligned_cols=88 Identities=19% Similarity=0.238 Sum_probs=48.3
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhccCCceeeee---echhHhh-cCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHh
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFAR---NVREAEE-TGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKK 292 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~---~~~~~~~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~ 292 (1134)
+|.|.|++|+||||.|+.++.++. + ..+. -+|+... ...+....+..+.. .. ....+.....+.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g--~---~~istGdllR~~i~~~t~lg~~~~~~~~~---G~--lvpd~iv~~lv~~~ 71 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG--F---VHISTGDILREAVQKGTPLGKKAKEYMER---GE--LVPDDLIIALIEEV 71 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC--C---EEEEHHHHHHHHHHHTCHHHHHHHHHHHH---TC--CCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC--C---eEEcHHHHHHHHHHhcChhhhhHHHHHhc---CC--cCCHHHHHHHHHHh
Confidence 578999999999999999987651 2 2221 1111111 11222222222221 11 12223346677777
Q ss_pred hcCCcceEEEecC-CChHHHHHHh
Q 001161 293 LTRKKVLIVFDDV-NHPRQIKILV 315 (1134)
Q Consensus 293 L~~k~~LlVLDdv-~~~~~l~~l~ 315 (1134)
+..... +|||+. .+..|.+.|.
T Consensus 72 l~~~~~-~ilDGfPRt~~Qa~~l~ 94 (206)
T 3sr0_A 72 FPKHGN-VIFDGFPRTVKQAEALD 94 (206)
T ss_dssp CCSSSC-EEEESCCCSHHHHHHHH
T ss_pred hccCCc-eEecCCchhHHHHHHHH
Confidence 776554 789998 5566665553
No 296
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.35 E-value=0.097 Score=57.65 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=24.9
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
...+++|+|+.|+||||+++.++..++..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 45799999999999999999998866543
No 297
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.27 E-value=0.012 Score=59.31 Aligned_cols=25 Identities=24% Similarity=-0.096 Sum_probs=21.3
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHh
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
+++.|+|+.|.||||+|..++.+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999987777654
No 298
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.27 E-value=0.11 Score=61.20 Aligned_cols=63 Identities=10% Similarity=-0.051 Sum_probs=42.1
Q ss_pred HHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc-CCceeeeeechhHhhcCCHHHHHHHHHHHH
Q 001161 203 EIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH-FAGSFFARNVREAEETGRLGDLRQQLLSTL 272 (1134)
Q Consensus 203 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 272 (1134)
.|.+++. +-..-.++.|.|.+|+||||+|..++.....+ =..++|+. -+....++...++...
T Consensus 231 ~LD~~lg-Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s------~E~s~~~l~~r~~~~~ 294 (503)
T 1q57_A 231 GINDKTL-GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM------LEESVEETAEDLIGLH 294 (503)
T ss_dssp THHHHHC-CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE------SSSCHHHHHHHHHHHH
T ss_pred hhhHhhc-ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe------ccCCHHHHHHHHHHHH
Confidence 3444442 33445689999999999999999999877654 33566662 3345566766665544
No 299
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.21 E-value=0.022 Score=57.20 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.3
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
.+.|.|+|++|+||||+|+.++.++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999876
No 300
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.19 E-value=0.028 Score=65.66 Aligned_cols=43 Identities=19% Similarity=0.106 Sum_probs=36.4
Q ss_pred CccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 193 DLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 193 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
.++|++..++.+...+..+ .-|.|+|++|+|||+||+++++..
T Consensus 23 ~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHH
Confidence 5899999999888777543 358999999999999999998765
No 301
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.19 E-value=0.023 Score=57.90 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=23.2
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
...+|+|+|++|.||||+|+.++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34679999999999999999999876
No 302
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.11 E-value=0.025 Score=55.78 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=22.8
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
..++|+|.|++|.||||+|+.++.++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999998764
No 303
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.07 E-value=0.033 Score=61.32 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=26.1
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHhccC
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKISRHF 243 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1134)
+....|.|+|++|.||||+|+.++..+...|
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 4456799999999999999999998776554
No 304
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.00 E-value=0.076 Score=54.08 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=23.1
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
...+|+|+|+.|.||||+|+.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999998776
No 305
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.96 E-value=0.15 Score=55.45 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=24.3
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
...+++|+|+.|+||||+++.++..+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999987654
No 306
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.91 E-value=0.17 Score=54.52 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=23.6
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
.-.+++|+|.+|+||||||+.++..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999999876543
No 307
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.79 E-value=0.08 Score=49.62 Aligned_cols=42 Identities=24% Similarity=0.388 Sum_probs=20.8
Q ss_pred CcccccCCCcceeEecCcCccccCcc-ccCCCCCCeeeccCCc
Q 001161 696 RLPEISSGNIETMHLDGTALEELPSS-IECLSKLSRLDLADCK 737 (1134)
Q Consensus 696 ~~~~~~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~ 737 (1134)
.+|.....+++.|+|++|.|+.||.. |..+++|+.|+|++|.
T Consensus 24 ~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 24 SLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 44443344455555555555555543 4445555555555543
No 308
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.78 E-value=0.051 Score=54.79 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=23.2
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
.+|.|.|++|+||||+|+.++.++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999988764
No 309
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.75 E-value=0.15 Score=55.47 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=27.2
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
...+|+|+|+.|+||||+++.++..+... .+.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l 135 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMF 135 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEE
Confidence 45799999999999999999999876543 334443
No 310
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.74 E-value=0.06 Score=58.30 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=25.4
Q ss_pred CCCeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 212 STNVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 212 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
.....+|+|.|..|.||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345678999999999999999999886654
No 311
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.60 E-value=0.13 Score=57.21 Aligned_cols=51 Identities=18% Similarity=0.161 Sum_probs=35.5
Q ss_pred hHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhc------cCCceeeee
Q 001161 200 PMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISR------HFAGSFFAR 250 (1134)
Q Consensus 200 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~ 250 (1134)
-...|..+|..+-....++.|+|.+|+||||||..++..... .-..++|+.
T Consensus 107 G~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 107 GSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp SCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred CChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 344566666533355678999999999999999999876432 223566764
No 312
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.55 E-value=0.2 Score=56.30 Aligned_cols=111 Identities=11% Similarity=0.082 Sum_probs=62.4
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhh
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL 293 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L 293 (1134)
...+++|+|+.|.||||+++.+...+.....+.+.+... ........ .+ .+..+.....+.......++..+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~---~~e~~~~~---~~--~~v~Q~~~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED---PIEYVFKH---KK--SIVNQREVGEDTKSFADALRAAL 206 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES---SCCSCCCC---SS--SEEEEEEBTTTBSCSHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc---cHhhhhcc---Cc--eEEEeeecCCCHHHHHHHHHHHh
Confidence 346899999999999999999988765543444432110 00000000 00 00000000001223356677888
Q ss_pred cCCcceEEEecCCChHHHHHHhcCcCCCCCCcEEEEEeCChh
Q 001161 294 TRKKVLIVFDDVNHPRQIKILVGRLDLLASGSRIIITTRDRQ 335 (1134)
Q Consensus 294 ~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIiiTTR~~~ 335 (1134)
...+=+|++|.+.+.+.+....... ..|..|+.|+....
T Consensus 207 ~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 207 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred hhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 8888899999998776655443332 34666777776543
No 313
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.51 E-value=0.038 Score=55.06 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=20.3
Q ss_pred eEEEEEecCCChHHHHHHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
.+|.|.|++|.||||+|+++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 314
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.48 E-value=0.029 Score=55.59 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.1
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHh
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
.+|+|+|+.|.||||+|+.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999987653
No 315
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.47 E-value=0.064 Score=59.31 Aligned_cols=50 Identities=16% Similarity=0.227 Sum_probs=34.4
Q ss_pred HHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc------CCceeeee
Q 001161 201 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH------FAGSFFAR 250 (1134)
Q Consensus 201 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~ 250 (1134)
...|..+|..+-....++.|+|.+|+||||||..++...... -..++|+.
T Consensus 93 ~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 93 SQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred chhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 445666664332345689999999999999999998765322 23566663
No 316
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.46 E-value=0.03 Score=56.00 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.2
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
.+.|.|+|++|.||||+|+.++.++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999998775
No 317
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.46 E-value=0.21 Score=55.52 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=27.1
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
...+++|+|+.|+||||+++.++..+... .+.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l 190 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLM 190 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEE
Confidence 45689999999999999999999876543 333433
No 318
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.45 E-value=0.23 Score=56.91 Aligned_cols=43 Identities=19% Similarity=0.195 Sum_probs=31.8
Q ss_pred hHHHHHHhhccC-------CCCeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 200 PMKEIESLLRTG-------STNVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 200 ~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
-.+++.+++... ....++|.++|.+|+||||+|..++..++.+
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 344555555432 1346799999999999999999999877665
No 319
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.43 E-value=0.048 Score=55.08 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=22.5
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
..+|.|.|++|.||||+|+.++.++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998876
No 320
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.41 E-value=0.032 Score=55.45 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.6
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
.|.|.|++|.||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998763
No 321
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.35 E-value=0.071 Score=54.32 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=24.3
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
...+|+|+|+.|.||||+|+.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999998775
No 322
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.34 E-value=0.044 Score=55.20 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=23.2
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
.+|.|.|++|+||||+|+.++.++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999987753
No 323
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.32 E-value=0.031 Score=56.06 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=23.3
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccC
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHF 243 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1134)
|.|.|+|+.|+|||||++++..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4588999999999999999887755444
No 324
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.29 E-value=0.051 Score=57.33 Aligned_cols=26 Identities=19% Similarity=0.040 Sum_probs=22.9
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
....|+|.|++|+||||+|+.+.+++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998765
No 325
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.28 E-value=0.033 Score=62.38 Aligned_cols=51 Identities=16% Similarity=0.088 Sum_probs=36.3
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
+...+.++|.+..++.+...+.... ..-|.|+|.+|+|||++|+++++...
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHhCc
Confidence 3445679999886665544332211 22389999999999999999998664
No 326
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=93.27 E-value=0.18 Score=58.46 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHHHH
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
.|+|+|.+|+|||||..++...
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 3899999999999999998764
No 327
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.27 E-value=0.045 Score=55.18 Aligned_cols=25 Identities=36% Similarity=0.287 Sum_probs=21.7
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
...+++|+|++|.|||||++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999998764
No 328
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.23 E-value=0.035 Score=55.71 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHh
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
.+|+|.|++|.||||+|+.++.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999988753
No 329
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.19 E-value=0.044 Score=54.83 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.9
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
.++++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999987654
No 330
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.17 E-value=0.25 Score=56.94 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=27.7
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
...+++|+|..|+|||||++.++..+... .+.+++
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l 326 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVML 326 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEE
Confidence 45789999999999999999999876543 344554
No 331
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.15 E-value=0.039 Score=56.36 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=22.4
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
..+|+|.|+.|.||||+|+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998876
No 332
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.13 E-value=0.072 Score=53.48 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=24.5
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
...+|.|.|++|.||||+|+.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3468999999999999999999987754
No 333
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.12 E-value=0.067 Score=53.83 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=30.8
Q ss_pred hhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 199 LPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 199 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
.-+..+..++.. -+....+.|+|++|.||||+|.++++.+..
T Consensus 43 ~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 43 TFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 335566666643 233456999999999999999999987643
No 334
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.10 E-value=0.27 Score=52.28 Aligned_cols=24 Identities=42% Similarity=0.339 Sum_probs=21.1
Q ss_pred eeEEEEEecCCChHHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
-.+++|+|+.|.|||||.+.++-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999998754
No 335
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.09 E-value=0.043 Score=55.99 Aligned_cols=24 Identities=42% Similarity=0.691 Sum_probs=21.8
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
.|+|.|+.|+||||+|+.++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998764
No 336
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.05 E-value=0.15 Score=58.43 Aligned_cols=29 Identities=28% Similarity=0.603 Sum_probs=24.4
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccCC
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHFA 244 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 244 (1134)
+.++|+|.+|+||||||..+......++.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~ 180 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHG 180 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccC
Confidence 45899999999999999999987665544
No 337
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.03 E-value=0.051 Score=55.03 Aligned_cols=25 Identities=28% Similarity=0.206 Sum_probs=22.5
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
..+|+|.|++|+||||+|+.+++++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 338
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.94 E-value=0.081 Score=51.92 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=24.9
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
..++++|.|..|.|||||+.++...++.+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35789999999999999999999887654
No 339
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.91 E-value=0.051 Score=57.70 Aligned_cols=25 Identities=28% Similarity=0.191 Sum_probs=22.1
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHh
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
.+|.|.|++|.||||||++++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998653
No 340
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.91 E-value=0.15 Score=56.30 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=30.3
Q ss_pred hhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 199 LPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 199 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
.-...|..+|..+-..-.++.|+|.+|+||||||..++...
T Consensus 82 TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 82 TSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp CSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 33455666664333445789999999999999999988753
No 341
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.90 E-value=0.058 Score=54.13 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.2
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
....|+|+|++|.||||+|+.++.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999876
No 342
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.88 E-value=0.043 Score=54.29 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.0
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHh
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
++|+|.|++|.||||+|+.++.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998753
No 343
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.84 E-value=0.055 Score=54.93 Aligned_cols=25 Identities=28% Similarity=0.209 Sum_probs=22.5
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHh
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
.+|+|.|++|.||||+|+.++.++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998763
No 344
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.83 E-value=0.061 Score=53.35 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=22.4
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
..+|+|+|+.|.||||+|+.++..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 345
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.76 E-value=0.063 Score=54.23 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.8
Q ss_pred eEEEEEecCCChHHHHHHHHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
.+|+|.|++|.||||+|+.++..+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 346
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.71 E-value=0.093 Score=53.95 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=24.5
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
..+|+|.|+.|+||||+|+.+++++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3579999999999999999999887644
No 347
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.69 E-value=0.06 Score=53.98 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=22.2
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
...|+|.|++|.||||+|+.+++++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 348
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.69 E-value=0.099 Score=55.03 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=31.9
Q ss_pred HHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 204 IESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 204 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
+.+.|..+-..-.++.|.|.+|+||||||..++......-..++|+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~ 57 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYV 57 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 4444433223446899999999999999998887655444456666
No 349
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.69 E-value=0.059 Score=52.98 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=21.5
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
.|+|.|++|.||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988763
No 350
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.64 E-value=0.2 Score=55.89 Aligned_cols=57 Identities=18% Similarity=0.153 Sum_probs=41.0
Q ss_pred ccccchhHHHHHHhhc-cCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeee
Q 001161 194 LVGVRLPMKEIESLLR-TGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFAR 250 (1134)
Q Consensus 194 ~vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1134)
..+...-...|..+|. .+-..-+++.|.|.+|+||||||..++......-..++|+.
T Consensus 41 ~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 41 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3445555667777775 33344578999999999999999999887655444677774
No 351
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.64 E-value=0.081 Score=60.47 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=34.3
Q ss_pred CccccchhHHHHHHhhcc------------CCCCeeEEEEEecCCChHHHHHHHHHHHHhccC
Q 001161 193 DLVGVRLPMKEIESLLRT------------GSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHF 243 (1134)
Q Consensus 193 ~~vGr~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1134)
.++|.+...+.+...+.. .....+-|.++|++|+||||+|++++..+...|
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 456666666666544421 001234589999999999999999998765443
No 352
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.63 E-value=0.039 Score=55.18 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=18.0
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHh
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
.+|.|.|++|+||||+|+.++.++.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999987653
No 353
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.57 E-value=0.052 Score=54.61 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=23.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccC
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHF 243 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1134)
++++|.|+.|.|||||++.+...+...|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 5789999999999999999998765444
No 354
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.56 E-value=0.16 Score=56.15 Aligned_cols=31 Identities=19% Similarity=0.042 Sum_probs=25.4
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCC
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFA 244 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 244 (1134)
.-+.++|+|.+|.|||||++.+++.+..+..
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~ 203 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 203 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHCT
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcCC
Confidence 3467999999999999999999887655443
No 355
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.52 E-value=0.074 Score=53.58 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=22.4
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
..+|+|.|++|.||||+|+.++.++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998765
No 356
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.51 E-value=0.071 Score=54.38 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=23.3
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
....+|+|.|++|.||||+|+.+++++
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998764
No 357
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.48 E-value=0.055 Score=55.55 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=23.8
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
..++|+|+|+.|+|||||++.++..+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 3468999999999999999999876543
No 358
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.45 E-value=0.076 Score=54.52 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=24.3
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
..+|+|.|+.|.||||+|+.++.++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999876543
No 359
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.43 E-value=0.072 Score=54.64 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=23.8
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
.+|+|.|++|+||||+|+.++.++...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 579999999999999999999877543
No 360
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.39 E-value=0.082 Score=53.84 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=22.4
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
..+|+|.|++|.||||+|+.++.++
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998876
No 361
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.30 E-value=0.056 Score=55.25 Aligned_cols=27 Identities=26% Similarity=0.472 Sum_probs=23.2
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
..++|+|+|++|+|||||++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346799999999999999999988763
No 362
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.26 E-value=0.37 Score=57.13 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=29.5
Q ss_pred HHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 202 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 202 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
..+...|..+-..-.+++|.|..|+|||||++.++......
T Consensus 268 ~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~ 308 (525)
T 1tf7_A 268 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN 308 (525)
T ss_dssp HHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 34445554332345689999999999999999998765543
No 363
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.25 E-value=0.068 Score=55.38 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=22.7
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
...|.|.|++|.||||+|+.++.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999988763
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.20 E-value=0.076 Score=53.58 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=22.4
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhc
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
+|+|.|+.|+||||+|+.+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987743
No 365
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.18 E-value=0.077 Score=56.30 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=23.7
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
....+|+|.|++|.||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456899999999999999999988654
No 366
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.14 E-value=0.075 Score=54.25 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.1
Q ss_pred eEEEEEecCCChHHHHHHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
.+|+|+|+.|.||||+|+.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999886
No 367
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.13 E-value=0.077 Score=53.39 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
.+++|.|+.|.|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 368
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.09 E-value=0.33 Score=56.55 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=24.1
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
..++|+|+|.+|+||||++.+++..++.+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 46789999999999999999999877654
No 369
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.05 E-value=0.08 Score=55.03 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=21.7
Q ss_pred eEEEEEecCCChHHHHHHHHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
.+|+|+|+.|.||||+|+.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 370
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.05 E-value=0.09 Score=53.49 Aligned_cols=26 Identities=35% Similarity=0.355 Sum_probs=22.7
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHH
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
....+|+|+|+.|.||||+|+.++..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999998864
No 371
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.03 E-value=0.091 Score=56.02 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=23.0
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
..+|.|.|++|.||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999998754
No 372
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.02 E-value=0.3 Score=55.97 Aligned_cols=28 Identities=32% Similarity=0.368 Sum_probs=24.2
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
.++|+|+|.+|+||||+|..++..++.+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999998876544
No 373
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.01 E-value=0.13 Score=56.38 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=27.9
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
++.++|+|+|-|||||||.|..++.-++..-..+.-+
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllI 82 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 82 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4679999999999999999998887665543334433
No 374
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.00 E-value=0.082 Score=53.34 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=22.8
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
...+|+|+|+.|.||||+|+.+...+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998763
No 375
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.94 E-value=0.078 Score=53.52 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=23.5
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
..++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999987654
No 376
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.79 E-value=0.1 Score=53.32 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=22.4
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHH
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
....+|+|+|++|.||||+|+.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999988764
No 377
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.75 E-value=0.2 Score=56.06 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=29.4
Q ss_pred HHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 203 EIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 203 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
++.+.+.....+..+|+|+|.+|+|||||+..++..+...
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3333443334567899999999999999999998766543
No 378
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.75 E-value=0.11 Score=51.86 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.5
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
..+|+|+|+.|.||||+++.+...+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 467999999999999999999987643
No 379
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=91.71 E-value=0.24 Score=50.11 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=18.6
Q ss_pred EEEEEecCCChHHHHHHHHHHH
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
++.|+|.+|.|||++|......
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6789999999999999876544
No 380
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.71 E-value=0.093 Score=54.08 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.6
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998765
No 381
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.65 E-value=0.15 Score=56.28 Aligned_cols=105 Identities=12% Similarity=0.054 Sum_probs=57.7
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhhcC
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKLTR 295 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L~~ 295 (1134)
.+++|+|..|.|||||++.+...+.. -.+.+.+....+. .+....+.+ .+.. .........+...|..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~----~~~~~~~~i--~~~~-----ggg~~~r~~la~aL~~ 239 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEI----VFKHHKNYT--QLFF-----GGNITSADCLKSCLRM 239 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCC----CCSSCSSEE--EEEC-----BTTBCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeecc----ccccchhEE--EEEe-----CCChhHHHHHHHHhhh
Confidence 46999999999999999998865433 3455555432111 000000000 0000 0112334566677888
Q ss_pred CcceEEEecCCChHHHHHHhcCcCCCCCCcEEEEEeCChh
Q 001161 296 KKVLIVFDDVNHPRQIKILVGRLDLLASGSRIIITTRDRQ 335 (1134)
Q Consensus 296 k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIiiTTR~~~ 335 (1134)
++=+|++|++...+.++.+... . ..+..+|+||....
T Consensus 240 ~p~ilildE~~~~e~~~~l~~~-~--~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 240 RPDRIILGELRSSEAYDFYNVL-C--SGHKGTLTTLHAGS 276 (330)
T ss_dssp CCSEEEECCCCSTHHHHHHHHH-H--TTCCCEEEEEECSS
T ss_pred CCCEEEEcCCChHHHHHHHHHH-h--cCCCEEEEEEcccH
Confidence 8889999999876555544322 1 11223566665443
No 382
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.62 E-value=0.12 Score=53.11 Aligned_cols=27 Identities=33% Similarity=0.457 Sum_probs=23.5
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
...+|+|+|+.|.|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988654
No 383
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.58 E-value=0.097 Score=53.36 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.0
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
..+++|+|+.|.|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3579999999999999999998754
No 384
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.57 E-value=0.091 Score=54.70 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.1
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
...|.|.|++|+||||+|+.++.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998764
No 385
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.56 E-value=0.097 Score=53.41 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.1
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
..+|+|+|+.|.||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999988765
No 386
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.51 E-value=0.092 Score=53.67 Aligned_cols=22 Identities=45% Similarity=0.539 Sum_probs=20.0
Q ss_pred eEEEEEecCCChHHHHHHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
.+|+|+|+.|.||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 387
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.50 E-value=0.099 Score=55.19 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=23.0
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
..+|+|+|+.|.|||||++.+++++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999997763
No 388
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.47 E-value=0.079 Score=55.93 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.4
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHh
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
.+|+|+|+.|.||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4699999999999999999998764
No 389
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.43 E-value=0.14 Score=55.41 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.7
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
...+|.|.|++|+||||+|+++..++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998764
No 390
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.43 E-value=0.27 Score=53.41 Aligned_cols=37 Identities=14% Similarity=0.025 Sum_probs=28.1
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHhccCC-ceeee
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKISRHFA-GSFFA 249 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~ 249 (1134)
..-.+++|.|.+|+|||||++.++..+...-. .+.|+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 34468999999999999999999987665433 34454
No 391
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.43 E-value=0.11 Score=52.65 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.3
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhc
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
.|+|.|+.|+||||+|+.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987644
No 392
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.42 E-value=0.15 Score=55.80 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=32.6
Q ss_pred ccccchhHHHHHHhhccC--CCCeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 194 LVGVRLPMKEIESLLRTG--STNVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 194 ~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
++|-...+..+...+... .....+|+|.|..|.||||+|+.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345555555554433322 34556899999999999999999887664
No 393
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.41 E-value=0.077 Score=54.54 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.5
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhc
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
+|+|.|+.|.||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987753
No 394
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.39 E-value=0.088 Score=54.60 Aligned_cols=25 Identities=32% Similarity=0.239 Sum_probs=22.3
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHh
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
..|.|.|++|+||||+|+.++.++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5689999999999999999998764
No 395
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.31 E-value=0.11 Score=53.98 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=28.0
Q ss_pred HHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 202 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 202 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
..+...|..+-..-.+++|+|+.|.|||||++.++...
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34545553332445789999999999999999998754
No 396
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.29 E-value=0.098 Score=53.93 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999988654
No 397
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.28 E-value=0.09 Score=63.62 Aligned_cols=51 Identities=14% Similarity=0.234 Sum_probs=41.4
Q ss_pred CCccCCccccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 188 QSENEDLVGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 188 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
+...+.++|.+..++.+...+..+ ..+.|+|++|.||||||+.++..+...
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ccccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 444567899999998888887644 469999999999999999999865443
No 398
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.14 E-value=0.15 Score=53.54 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=34.1
Q ss_pred HHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhc------cCCceeeee
Q 001161 201 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISR------HFAGSFFAR 250 (1134)
Q Consensus 201 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~ 250 (1134)
+..|..+|..+-..-.+++|+|++|+||||||+.++..... .-..++|+.
T Consensus 10 ~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 10 SKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp CHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred ChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 34555666433234568999999999999999999875322 134566663
No 399
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.11 E-value=0.11 Score=53.55 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=21.7
Q ss_pred eEEEEEecCCChHHHHHHHHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
..|.|.|++|.||||+|+.++.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 400
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.90 E-value=0.11 Score=55.14 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.4
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
...+|+|+|+.|.||||+++.++.++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999997753
No 401
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.87 E-value=0.14 Score=52.56 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=23.3
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
..+|.|.|+.|.||||+|+.++..+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998765
No 402
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.77 E-value=0.13 Score=52.55 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.9
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
+|+|.|+.|.||||+|+.++.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988653
No 403
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.63 E-value=0.15 Score=52.56 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=20.8
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
.|+|.|++|.||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 404
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.51 E-value=0.12 Score=52.44 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.1
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHh
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
++++|+|+.|.|||||++.+...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5799999999999999999987653
No 405
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.46 E-value=0.13 Score=53.69 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=22.4
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHh
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
..|.|.|++|.||||+|+.++.++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999998763
No 406
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=90.44 E-value=1.1 Score=47.95 Aligned_cols=49 Identities=14% Similarity=0.096 Sum_probs=31.3
Q ss_pred chHHHHHHHHhcccEEEEecCCcccchhhHHHHHHHHHhhhccCcEEEeEEeeec
Q 001161 64 ISQSLLDAIEASSISIIVFSERYASSRWCLDELLKILECKKEYAQIVIPACYRVD 118 (1134)
Q Consensus 64 ~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~~El~~~~~~~~~~~~~v~pvf~~v~ 118 (1134)
....+.+.++++++.|.|+.-.-..+..+ .++.+.+ .+..++-|+-+.|
T Consensus 13 a~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l-----~~kp~ilVlNK~D 61 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL-----KNKPRIMLLNKAD 61 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC-----SSSCEEEEEECGG
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH-----CCCCEEEEEECcc
Confidence 34578889999999998887665555554 2344443 2334555665665
No 407
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.43 E-value=0.13 Score=52.23 Aligned_cols=24 Identities=29% Similarity=0.252 Sum_probs=21.8
Q ss_pred eEEEEEecCCChHHHHHHHHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
.+|+|.|+.|.||||+|+.+.+++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998765
No 408
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.37 E-value=0.17 Score=53.39 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=23.0
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
...+|+|.|+.|.|||||++.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999998765
No 409
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.34 E-value=0.15 Score=56.09 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=22.5
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHh
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
.+|+|.|+.|+||||||+.++.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998754
No 410
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.32 E-value=0.15 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=21.0
Q ss_pred EEEEEecCCChHHHHHHHHHHHH
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 411
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.30 E-value=0.14 Score=53.09 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=22.4
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHh
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
.+|+|.|++|.||||+|+.++.++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988763
No 412
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=90.29 E-value=0.35 Score=56.15 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=17.9
Q ss_pred EEEEecCCChHHHHHHHHHH
Q 001161 218 LGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 218 v~I~G~gGiGKTtLA~~~~~ 237 (1134)
|+|+|.+|+|||||..++..
T Consensus 236 V~ivG~~nvGKSSLln~L~~ 255 (476)
T 3gee_A 236 TVIAGKPNAGKSTLLNTLLG 255 (476)
T ss_dssp EEEECCTTSSHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 89999999999999988765
No 413
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.29 E-value=0.16 Score=54.76 Aligned_cols=24 Identities=38% Similarity=0.710 Sum_probs=21.5
Q ss_pred CeeEEEEEecCCChHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
...+|+|+|+.|.||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999883
No 414
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.27 E-value=0.44 Score=63.15 Aligned_cols=97 Identities=19% Similarity=0.130 Sum_probs=59.7
Q ss_pred HHHHHHhhccCC-CCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCC
Q 001161 201 MKEIESLLRTGS-TNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVK 279 (1134)
Q Consensus 201 ~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 279 (1134)
...|...|..++ ..-++|-|+|+.|.||||||.++.......=..++|++. ++.+.... +..+.-+.+..
T Consensus 1416 ~~~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~------e~~~~~~~---~~~~Gv~~~~l 1486 (1706)
T 3cmw_A 1416 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA------EHALDPIY---ARKLGVDIDNL 1486 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT------TSCCCHHH---HHHTTCCGGGC
T ss_pred CHHHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEec------CCCCCHHH---HHHcCCCHHHe
Confidence 445666776432 456899999999999999999999877777777888842 12222221 33333222211
Q ss_pred -----CCccccHHHHHHhhcC-CcceEEEecCC
Q 001161 280 -----NFPNIDLNFQSKKLTR-KKVLIVFDDVN 306 (1134)
Q Consensus 280 -----~~~~~~~~~l~~~L~~-k~~LlVLDdv~ 306 (1134)
...++....+...++. ..-+||+|-|.
T Consensus 1487 ~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1487 LCSQPDTGEQALEICDALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCCSEEEESCST
T ss_pred EEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHH
Confidence 2224445555555553 45688999873
No 415
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.26 E-value=0.24 Score=51.19 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=24.2
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
....|+|+|.+|+|||||+..+.......
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 46789999999999999999998765433
No 416
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.21 E-value=0.39 Score=64.55 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=36.0
Q ss_pred HHHHHHhhc-cCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 201 MKEIESLLR-TGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 201 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
..+|..+|. .+-...+.|.|+|++|+|||+||.+++.....+=..+.|+
T Consensus 1412 ~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi 1461 (2050)
T 3cmu_A 1412 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI 1461 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 445666665 2224567899999999999999999988766554556666
No 417
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.19 E-value=0.2 Score=51.63 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=29.9
Q ss_pred hhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 199 LPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 199 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
...+.+...+.. ...++|+|+|.+|+|||||+.++.......
T Consensus 16 ~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 16 RLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 334444444422 356789999999999999999998775444
No 418
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.12 E-value=0.18 Score=55.09 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=24.8
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
....+|+|.|..|.|||||++.+...+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 45678999999999999999999876643
No 419
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.09 E-value=0.17 Score=53.39 Aligned_cols=37 Identities=24% Similarity=0.147 Sum_probs=26.9
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHH-hccCCceeee
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKI-SRHFAGSFFA 249 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~-~~~f~~~~~~ 249 (1134)
..-.++.|.|.+|+|||++|.+++... ...-..++|+
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~ 65 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceee
Confidence 345689999999999999999877543 3333445555
No 420
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.07 E-value=0.13 Score=54.54 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=23.3
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
...+|.|.|++|.||||+|+.+..++.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999987653
No 421
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.01 E-value=0.62 Score=55.59 Aligned_cols=28 Identities=21% Similarity=0.083 Sum_probs=23.8
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccC
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHF 243 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1134)
+++.|+|.+|.||||++.++...+...-
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g 232 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLG 232 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 6789999999999999999988665443
No 422
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.88 E-value=0.36 Score=63.97 Aligned_cols=56 Identities=18% Similarity=0.158 Sum_probs=40.8
Q ss_pred ccccchhHHHHHHhhc-cCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 194 LVGVRLPMKEIESLLR-TGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 194 ~vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
..+...-..+|..+|. .+-..-.+|.|.|.+|+||||||.+++......-..+.|+
T Consensus 710 ~~~i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~Vlyi 766 (1706)
T 3cmw_A 710 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI 766 (1706)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccccccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEE
Confidence 4455566677777775 3334457899999999999999999998776544456666
No 423
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.83 E-value=0.19 Score=49.62 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.9
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
.++++|+|..|+|||||++.+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999987654
No 424
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.81 E-value=0.18 Score=51.90 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.6
Q ss_pred eeEEEEEecCCChHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
..+|+|.|+.|.||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999875
No 425
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=89.80 E-value=0.45 Score=52.59 Aligned_cols=30 Identities=27% Similarity=0.124 Sum_probs=24.9
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccC
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHF 243 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1134)
.-+.++|.|.+|+|||+|+..+++.+..+.
T Consensus 174 rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~ 203 (427)
T 3l0o_A 174 KGQRGMIVAPPKAGKTTILKEIANGIAENH 203 (427)
T ss_dssp TTCEEEEEECTTCCHHHHHHHHHHHHHHHC
T ss_pred CCceEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 345689999999999999999998766443
No 426
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.60 E-value=0.17 Score=55.12 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
++|.|+|+.|+||||||++++.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999999765
No 427
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.58 E-value=0.17 Score=49.97 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=23.4
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
++++|+|..|.|||||++.+...+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 579999999999999999998876543
No 428
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.51 E-value=0.17 Score=51.65 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.6
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
.-.+++|+|+.|.|||||++.+...+
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998765
No 429
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.37 E-value=0.84 Score=54.63 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=35.0
Q ss_pred HHHHhhcCCcceEEEecCCC---h---HHHHHHhcCcCCCCCCcEEEEEeCChhhhhhcCCCeEEEec
Q 001161 288 FQSKKLTRKKVLIVFDDVNH---P---RQIKILVGRLDLLASGSRIIITTRDRQVLANCGVDEVYQMK 349 (1134)
Q Consensus 288 ~l~~~L~~k~~LlVLDdv~~---~---~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~~~~~~~~l~ 349 (1134)
.+...|..++=+++||.--. . ..+..+...+. ..|..||++|.+...+... .+.++.+.
T Consensus 231 ~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~--~~g~tvi~vtHdl~~~~~~-~drv~vl~ 295 (608)
T 3j16_B 231 AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLL--APTKYVICVEHDLSVLDYL-SDFVCIIY 295 (608)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGG--TTTCEEEEECSCHHHHHHH-CSEEEEEE
T ss_pred HHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHh-CCEEEEEe
Confidence 34455667788999997522 2 22333443333 3466788888887766554 45555553
No 430
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.25 E-value=0.12 Score=55.99 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=20.5
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
+..+|+|.|..|.||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988654
No 431
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.21 E-value=0.29 Score=54.39 Aligned_cols=29 Identities=34% Similarity=0.449 Sum_probs=24.9
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
.+..+|+|+|.+|+||||++..++..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 56688999999999999999999876554
No 432
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.18 E-value=0.23 Score=48.28 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=23.6
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
..-.+++|.|+-|.|||||++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345689999999999999999999876
No 433
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.15 E-value=0.24 Score=57.66 Aligned_cols=46 Identities=7% Similarity=0.019 Sum_probs=31.5
Q ss_pred ccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 196 GVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 196 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
.|....+.+.+..........+|.+.|+.|.||||+|++++.++..
T Consensus 376 ~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 376 SYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3333344444444211234468999999999999999999998864
No 434
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.13 E-value=0.16 Score=52.41 Aligned_cols=25 Identities=32% Similarity=0.636 Sum_probs=22.1
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
..+++|+|+.|.|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4579999999999999999998755
No 435
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.07 E-value=0.26 Score=55.28 Aligned_cols=28 Identities=25% Similarity=0.102 Sum_probs=23.9
Q ss_pred CCCeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 212 STNVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 212 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
-...++++|+|++|.|||||++.++...
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3455789999999999999999999754
No 436
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.07 E-value=0.19 Score=50.44 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.6
Q ss_pred EEEEEecCCChHHHHHHHHHHHHh
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
+++|+|+.|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 589999999999999999988664
No 437
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.04 E-value=0.24 Score=51.87 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=23.5
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
....+|+|.|+.|.||||+++.++.++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 445689999999999999999998765
No 438
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.04 E-value=0.33 Score=49.78 Aligned_cols=27 Identities=22% Similarity=0.112 Sum_probs=22.6
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
-.|.+.|.||+||||+|..++.....+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 347889999999999999998876544
No 439
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.87 E-value=0.14 Score=56.08 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=22.2
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
.++|.|+|+.|+||||||.+++.++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3589999999999999999998765
No 440
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.87 E-value=0.42 Score=57.24 Aligned_cols=75 Identities=11% Similarity=0.007 Sum_probs=42.5
Q ss_pred HHHHHHhhCCCceEecC---CCCCCCcchHHHHHHHHhcccEEEEecCCcc-cchhhHHHHHHHHHhhhccCcEEEeEEe
Q 001161 40 HLYSALSRESIETFIDD---DLRRGDEISQSLLDAIEASSISIIVFSERYA-SSRWCLDELLKILECKKEYAQIVIPACY 115 (1134)
Q Consensus 40 ~l~~~l~~~g~~~~~d~---~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~-~s~wc~~El~~~~~~~~~~~~~v~pvf~ 115 (1134)
...+.|+.-|+....|. ++..|+...-+|.+|+..--. |+++-+-.+ -..--..++..++..-.+.+..||-|-+
T Consensus 201 ~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~-llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtH 279 (608)
T 3j16_B 201 DVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEAD-VYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH 279 (608)
T ss_dssp HHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCS-EEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECS
T ss_pred HHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCC-EEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 45556677787766664 677777777777777665433 556655322 2233344555555544344445554433
No 441
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=88.76 E-value=0.21 Score=51.49 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=23.5
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
...+++|+|+.|+|||||++.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 346899999999999999999987654
No 442
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=88.74 E-value=0.94 Score=51.68 Aligned_cols=47 Identities=26% Similarity=0.414 Sum_probs=31.5
Q ss_pred HHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhcc-CCceeee
Q 001161 201 MKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRH-FAGSFFA 249 (1134)
Q Consensus 201 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~ 249 (1134)
++.|.-++..+ +-+.++|.|.+|+|||+|+..+.+.+... -+.++|+
T Consensus 141 ir~ID~l~pig--kGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~ 188 (482)
T 2ck3_D 141 IKVVDLLAPYA--KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 188 (482)
T ss_dssp CHHHHHHSCEE--TTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE
T ss_pred eEEEecccccc--cCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE
Confidence 34444443322 34569999999999999999999876433 3444554
No 443
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.69 E-value=0.72 Score=55.27 Aligned_cols=133 Identities=16% Similarity=0.140 Sum_probs=65.5
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhcc-----CC-ceeeeeechhHhhcCCHH--------------HHHHHHHHHHhc
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRH-----FA-GSFFARNVREAEETGRLG--------------DLRQQLLSTLLN 274 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~-~~~~~~~~~~~~~~~~~~--------------~l~~~ll~~l~~ 274 (1134)
-.+++|+|+.|.|||||++.++-..... +. ...|+..-........+. ....+++..+.-
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l 461 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI 461 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 3579999999999999999998633211 00 111221100000000111 112333333332
Q ss_pred CCCCCCCc------cccHHHHHHhhcCCcceEEEecCCC------hHHHHHHhcCcCCCCCCcEEEEEeCChhhhhhcCC
Q 001161 275 DGNVKNFP------NIDLNFQSKKLTRKKVLIVFDDVNH------PRQIKILVGRLDLLASGSRIIITTRDRQVLANCGV 342 (1134)
Q Consensus 275 ~~~~~~~~------~~~~~~l~~~L~~k~~LlVLDdv~~------~~~l~~l~~~~~~~~~gsrIiiTTR~~~~~~~~~~ 342 (1134)
........ +...-.+...|..++=+++||.--. ..++..+...+. ...|..||++|.+...+... .
T Consensus 462 ~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~-~~~g~tvi~vsHd~~~~~~~-a 539 (607)
T 3bk7_A 462 IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM-EKNEKTALVVEHDVLMIDYV-S 539 (607)
T ss_dssp TTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH-HHTTCEEEEECSCHHHHHHH-C
T ss_pred chHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHHHh-C
Confidence 21111111 1112345566778888999997522 122222222211 02366788899888776654 3
Q ss_pred CeEEEec
Q 001161 343 DEVYQMK 349 (1134)
Q Consensus 343 ~~~~~l~ 349 (1134)
++++.+.
T Consensus 540 drv~vl~ 546 (607)
T 3bk7_A 540 DRLIVFE 546 (607)
T ss_dssp SEEEEEE
T ss_pred CEEEEEc
Confidence 5565553
No 444
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=88.63 E-value=0.35 Score=52.80 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=27.8
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
...++|+|+|-||+||||+|..++..++..-..++.+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 3568899999999999999999998776553333333
No 445
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.62 E-value=0.46 Score=56.14 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=21.3
Q ss_pred CeeEEEEEecCCChHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
.-.+++|+|+.|.|||||.+.++-
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 457899999999999999998874
No 446
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.55 E-value=0.21 Score=53.94 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.6
Q ss_pred eEEEEEecCCChHHHHHHHHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
++|+|.|+.|+||||||..++.++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 578999999999999999998754
No 447
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.54 E-value=0.37 Score=51.15 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=23.8
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
...++.+.|.||+||||++..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999987766
No 448
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=88.53 E-value=0.28 Score=53.62 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=24.2
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
....+|+|+|..|.|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457899999999999999999987664
No 449
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.48 E-value=0.27 Score=49.73 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=26.3
Q ss_pred EEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 217 KLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
.|+|-|.-|+||||.++.+++.+..+-..+.+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 478899999999999999999887654444443
No 450
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.48 E-value=0.39 Score=51.24 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=26.0
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
++|+|.|-||+||||+|..++..++.+-..+..+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 5788899999999999999998776543333433
No 451
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=88.35 E-value=0.59 Score=49.59 Aligned_cols=47 Identities=13% Similarity=0.051 Sum_probs=30.1
Q ss_pred chHHHHHHHHhcccEEEEecCCcccchhhHHHHHHHHHhhhccCcEEEeEEeeec
Q 001161 64 ISQSLLDAIEASSISIIVFSERYASSRWCLDELLKILECKKEYAQIVIPACYRVD 118 (1134)
Q Consensus 64 ~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~~El~~~~~~~~~~~~~v~pvf~~v~ 118 (1134)
....+.+.++++++.|.|++-.-..+..+. ++. ++ +..++-|+-+.|
T Consensus 11 a~~~~~~~l~~~D~vl~VvDar~P~~~~~~-~l~-ll------~k~~iivlNK~D 57 (262)
T 3cnl_A 11 AKRQIKDLLRLVNTVVEVRDARAPFATSAY-GVD-FS------RKETIILLNKVD 57 (262)
T ss_dssp TTHHHHHHHTTCSEEEEEEETTSTTTTSCT-TSC-CT------TSEEEEEEECGG
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-HHH-hc------CCCcEEEEECcc
Confidence 345788999999999999986655555442 122 22 344566666665
No 452
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.28 E-value=0.24 Score=53.94 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
.+|.|.|++|.||||+|+.+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999998874
No 453
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.27 E-value=0.82 Score=52.22 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=23.0
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
....+|.|+|++|.||||+|++++.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346789999999999999999988654
No 454
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.16 E-value=0.25 Score=53.18 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=22.3
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
.++|.|.|+.|+||||||..++.++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 455
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.13 E-value=0.17 Score=52.84 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=16.4
Q ss_pred eeEEEEEecCCChHHHHHHHHH-HHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIF-SKI 239 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~-~~~ 239 (1134)
..+++|+|+.|.|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 654
No 456
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.10 E-value=0.7 Score=62.17 Aligned_cols=58 Identities=19% Similarity=0.178 Sum_probs=43.5
Q ss_pred CccccchhHHHHHHhhc-cCCCCeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeee
Q 001161 193 DLVGVRLPMKEIESLLR-TGSTNVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFAR 250 (1134)
Q Consensus 193 ~~vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1134)
...+...-..+|..+|. .+-..-+++.|+|.+|+||||||.+++......-..++|+.
T Consensus 360 ~~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis 418 (2050)
T 3cmu_A 360 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (2050)
T ss_dssp SCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45566667778888875 23345578999999999999999999987765545667763
No 457
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=88.07 E-value=0.42 Score=51.75 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=24.9
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
..++++|+|.+|+||||++..++..++..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999877654
No 458
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.84 E-value=0.33 Score=50.45 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=24.7
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
....|+|.|+.|.||||+++.++..+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4468999999999999999999988765
No 459
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=87.63 E-value=0.33 Score=54.01 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=29.2
Q ss_pred HHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 202 KEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 202 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
..|..+|..+-..-.++.|+|.+|+|||||++.++..+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34555554333456899999999999999999998765
No 460
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=87.48 E-value=0.31 Score=49.55 Aligned_cols=26 Identities=15% Similarity=0.057 Sum_probs=23.4
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHh
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
..+|.|.|+.|.||||+|+.++.++.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998874
No 461
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.44 E-value=0.22 Score=49.84 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.1
Q ss_pred eEEEEEecCCChHHHHHHHHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
+.|.|.|+.|+||||||.+++.+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 568999999999999999988653
No 462
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.39 E-value=0.43 Score=56.33 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=24.7
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
...+|+|+|+.|.|||||++.++..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3468999999999999999999988764
No 463
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=87.38 E-value=0.48 Score=51.20 Aligned_cols=27 Identities=30% Similarity=0.588 Sum_probs=23.5
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
++|+|.|-||+||||+|..++..++.+
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 678889999999999999999877654
No 464
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=87.31 E-value=0.3 Score=51.13 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=21.6
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHH
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
.. .+++|+|+.|.|||||.+.++-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhC
Confidence 45 7899999999999999999875
No 465
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=87.28 E-value=0.78 Score=52.56 Aligned_cols=35 Identities=31% Similarity=0.533 Sum_probs=27.4
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhc-cCCceeee
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISR-HFAGSFFA 249 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~ 249 (1134)
-+.++|.|.+|+|||+|+..+.+.+.. +-+.++|+
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~ 200 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG 200 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE
Confidence 456999999999999999999987644 33455554
No 466
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=87.28 E-value=0.89 Score=46.14 Aligned_cols=110 Identities=14% Similarity=0.034 Sum_probs=52.8
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccCCceeeeeechhHhhcCCHHHHHHHHHHHHhcCCCCCCCccccHHHHHHhh
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFARNVREAEETGRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSKKL 293 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~~L 293 (1134)
...+..++|.-|.||||.|...+.+...+-..++.+.... ..+++...+...+--.+ ......... .+.+..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~--d~R~ge~~i~s~~g~~~--~a~~~~~~~----~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCI--DNRYSEEDVVSHNGLKV--KAVPVSASK----DIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-------------------C--CEEECSSGG----GGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc--CCcchHHHHHhhcCCee--EEeecCCHH----HHHHHH
Confidence 3468899999999999999988887655444344432111 11222222222221110 000001111 122222
Q ss_pred cCCcceEEEecCCC--hHHHHHHhcCcCCCCCCcEEEEEeCCh
Q 001161 294 TRKKVLIVFDDVNH--PRQIKILVGRLDLLASGSRIIITTRDR 334 (1134)
Q Consensus 294 ~~k~~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIiiTTR~~ 334 (1134)
.++--+|++|.+.- .++++.+.... ..|-.||+|-++.
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~~l~---~~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQVLA---NRGYRVIVAGLDQ 138 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHHHHH---HTTCEEEEEECSB
T ss_pred hcCCCEEEEECcccCCHHHHHHHHHHh---hCCCEEEEEeccc
Confidence 33334999998743 34444333211 2377899999964
No 467
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.06 E-value=0.34 Score=48.67 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=21.1
Q ss_pred eeEEEEEecCCChHHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998863
No 468
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=87.06 E-value=0.37 Score=53.95 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.4
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHh
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
.+|+|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999998764
No 469
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.96 E-value=0.36 Score=50.64 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=22.5
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHh
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKIS 240 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1134)
..|+|.|..|+||||+++.+++.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999998764
No 470
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=86.82 E-value=1.3 Score=53.20 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.1
Q ss_pred CeeEEEEEecCCChHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
...+++|+|+.|.|||||++.++.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999875
No 471
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=86.77 E-value=0.35 Score=49.91 Aligned_cols=90 Identities=19% Similarity=0.180 Sum_probs=47.7
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccCCceeeee---echhHhhc-CCHHHHHHHHHHHHhcCCCCCCCccccHHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHFAGSFFAR---NVREAEET-GRLGDLRQQLLSTLLNDGNVKNFPNIDLNFQSK 291 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~---~~~~~~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~l~~ 291 (1134)
..+||.|++|.||||+|+.++.++. + .++. .++..... ..+....+++ ... ......+.....+++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g--~---~~is~gdllR~~~~~~t~lG~~i~~~----~~~-G~lvpdei~~~ll~~ 78 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG--I---PQISTGDMLRAAVKAGTPLGVEAKTY----MDE-GKLVPDSLIIGLVKE 78 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT--C---CEECHHHHHHHHHHTTCHHHHHHHHH----HTT-TCCCCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC--C---CeeechHHHHHhccCCChHHHHHHHH----Hhh-ccccccHHHHHHHHH
Confidence 4589999999999999999987652 1 2221 11111111 1122222222 221 112222334566666
Q ss_pred hhcCC--cceEEEecC-CChHHHHHHh
Q 001161 292 KLTRK--KVLIVFDDV-NHPRQIKILV 315 (1134)
Q Consensus 292 ~L~~k--~~LlVLDdv-~~~~~l~~l~ 315 (1134)
++... .-=+|||.. .+..|.+.|.
T Consensus 79 ~l~~~~~~~g~ILDGfPRt~~Qa~~L~ 105 (230)
T 3gmt_A 79 RLKEADCANGYLFDGFPRTIAQADAMK 105 (230)
T ss_dssp HHHSGGGTTCEEEESCCCSHHHHHHHH
T ss_pred HHhCcccCCCeEecCCCCcHHHHHHHH
Confidence 66542 113578998 5667777664
No 472
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.70 E-value=0.67 Score=47.42 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=24.5
Q ss_pred eeEEEEEecCCChHHHHHHHHHHHHhcc
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSKISRH 242 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1134)
...|.|.|+.|.||||+++.+.+.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3679999999999999999999987654
No 473
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=86.64 E-value=0.38 Score=46.28 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.8
Q ss_pred eEEEEEecCCChHHHHHHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
+.|+|+|.+|+|||||+..+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998875
No 474
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=86.52 E-value=0.3 Score=50.59 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=20.4
Q ss_pred eeEEEEEecCCChHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
-.+++|+|+.|.|||||++.++-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999998864
No 475
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=86.51 E-value=0.75 Score=50.85 Aligned_cols=29 Identities=31% Similarity=0.510 Sum_probs=24.5
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
....+++|+|.+|+|||||.+.+...+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 45678999999999999999999876543
No 476
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=86.38 E-value=0.56 Score=55.21 Aligned_cols=30 Identities=17% Similarity=0.089 Sum_probs=25.2
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhccC
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISRHF 243 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1134)
...+|.++|++|.||||+|++++..+...|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 346799999999999999999998775444
No 477
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=86.36 E-value=0.41 Score=46.63 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.7
Q ss_pred eEEEEEecCCChHHHHHHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998874
No 478
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=86.29 E-value=0.57 Score=46.85 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=20.8
Q ss_pred CeeEEEEEecCCChHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
....|+|+|.+|+|||||...+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 445799999999999999998875
No 479
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=86.18 E-value=0.26 Score=50.28 Aligned_cols=23 Identities=30% Similarity=0.108 Sum_probs=20.7
Q ss_pred eEEEEEecCCChHHHHHHHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
.+++|+|+.|.|||||++.++-.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998865
No 480
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=86.01 E-value=0.31 Score=50.84 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=20.8
Q ss_pred CeeEEEEEecCCChHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
.-.+++|+|+.|.|||||++.++-
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 345799999999999999998864
No 481
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=85.78 E-value=0.6 Score=47.48 Aligned_cols=29 Identities=21% Similarity=0.447 Sum_probs=24.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHHHhccCC
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKISRHFA 244 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 244 (1134)
..|+|-|.-|+||||+++.+++.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 46889999999999999999998865554
No 482
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=85.74 E-value=0.38 Score=48.62 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=20.7
Q ss_pred eeEEEEEecCCChHHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999998863
No 483
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=85.72 E-value=0.38 Score=54.38 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=29.8
Q ss_pred chhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHH
Q 001161 198 RLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 198 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
..-+..|.++|..+-..-.++.|+|.+|+|||||++.++-.
T Consensus 161 ~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 161 TTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp CCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 34455666666433344578999999999999999987643
No 484
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=85.56 E-value=0.34 Score=49.89 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=21.3
Q ss_pred eEEEEEecCCChHHHHHHHHHHHH
Q 001161 216 YKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
.+|+|+|+.|.||||+|+.+..++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999999988764
No 485
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=85.55 E-value=0.26 Score=59.21 Aligned_cols=48 Identities=17% Similarity=0.083 Sum_probs=34.3
Q ss_pred CCccccchhHHHHHHhhccCCCC---------eeEEEEEecCCChHHHHHHHHHHHH
Q 001161 192 EDLVGVRLPMKEIESLLRTGSTN---------VYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~~~~~---------~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
+.++|.+...+.+...+..+... -.-|.++|++|+|||+||+++++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 46899998777765555433100 0148999999999999999988654
No 486
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=85.50 E-value=0.61 Score=47.23 Aligned_cols=34 Identities=26% Similarity=0.179 Sum_probs=25.8
Q ss_pred eEEEEE-ecCCChHHHHHHHHHHHHhccCCceeee
Q 001161 216 YKLGIW-GIGGIGKTTIAGAIFSKISRHFAGSFFA 249 (1134)
Q Consensus 216 ~vv~I~-G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1134)
++|+|+ +-||+||||+|..++..+..+-..+..+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli 36 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVV 36 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 577887 6899999999999998776643344444
No 487
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=85.39 E-value=0.83 Score=54.02 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=31.5
Q ss_pred cccchhHHHHHHhhccCCCCeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 195 VGVRLPMKEIESLLRTGSTNVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 195 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
+-|....+.+.+..........+|.+.|++|.||||+|+.+..++..
T Consensus 352 ~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 352 FTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 33333444444444222233568999999999999999999987654
No 488
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=85.38 E-value=0.37 Score=50.39 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.6
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
.-.+++|+|+.|.|||||++.++..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999998753
No 489
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=85.32 E-value=0.45 Score=45.90 Aligned_cols=21 Identities=33% Similarity=0.653 Sum_probs=19.0
Q ss_pred EEEEEecCCChHHHHHHHHHH
Q 001161 217 KLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
.|+++|.+|+|||||+..+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999998875
No 490
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=85.31 E-value=2 Score=48.75 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=21.8
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHH
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
...++..|.|.+|.||||+.++.++
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 4678999999999999999987764
No 491
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=85.31 E-value=0.41 Score=50.47 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.7
Q ss_pred eeEEEEEecCCChHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
-.+++|+|+.|.|||||++.++-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999999876
No 492
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=85.28 E-value=0.74 Score=54.75 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=24.3
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHHHhc
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSKISR 241 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1134)
...+|.|.|++|.||||+|+++.+++..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 3468999999999999999999987753
No 493
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=85.24 E-value=0.36 Score=51.65 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.3
Q ss_pred eeEEEEEecCCChHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
-.+++|+|+.|.|||||++.++-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999864
No 494
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=85.07 E-value=0.37 Score=51.24 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.0
Q ss_pred CeeEEEEEecCCChHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
.-.+++|+|+.|.|||||++.++-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346799999999999999998874
No 495
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=85.05 E-value=0.39 Score=47.82 Aligned_cols=21 Identities=43% Similarity=0.514 Sum_probs=18.9
Q ss_pred EEEEEecCCChHHHHHHHHHH
Q 001161 217 KLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
-|+|+|.+|+|||||++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999998875
No 496
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=85.02 E-value=0.43 Score=50.87 Aligned_cols=25 Identities=24% Similarity=0.330 Sum_probs=21.5
Q ss_pred CeeEEEEEecCCChHHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFSK 238 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1134)
.-.+++|+|+.|.|||||++.++--
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999998763
No 497
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=84.91 E-value=0.6 Score=50.52 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=23.5
Q ss_pred CCeeEEEEEecCCChHHHHHHHHHHHH
Q 001161 213 TNVYKLGIWGIGGIGKTTIAGAIFSKI 239 (1134)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1134)
..-.+++|+|+.|.|||||++.+..-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 445689999999999999999998765
No 498
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=84.88 E-value=0.38 Score=50.37 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=20.4
Q ss_pred eeEEEEEecCCChHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
-.+++|+|+.|.|||||.+.++-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999999874
No 499
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=84.82 E-value=0.33 Score=49.77 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.3
Q ss_pred eeEEEEEecCCChHHHHHHHHHH
Q 001161 215 VYKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
-.+++|+|+.|.|||||++.++-
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34699999999999999999875
No 500
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=84.75 E-value=0.38 Score=51.19 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=20.9
Q ss_pred CeeEEEEEecCCChHHHHHHHHHH
Q 001161 214 NVYKLGIWGIGGIGKTTIAGAIFS 237 (1134)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~ 237 (1134)
.-.+++|+|+.|.|||||++.++-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 345799999999999999998874
Done!