Query 001162
Match_columns 1134
No_of_seqs 614 out of 4237
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 17:31:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001162.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001162hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0735 AAA+-type ATPase [Post 100.0 2E-129 5E-134 1113.6 68.2 935 1-1118 3-941 (952)
2 KOG0733 Nuclear AAA ATPase (VC 100.0 1.3E-94 2.9E-99 817.1 46.7 543 550-1112 186-788 (802)
3 KOG0730 AAA+-type ATPase [Post 100.0 1.6E-85 3.4E-90 757.6 43.0 506 554-1109 184-690 (693)
4 KOG0736 Peroxisome assembly fa 100.0 4.4E-74 9.5E-79 665.3 42.7 502 589-1113 430-952 (953)
5 TIGR01243 CDC48 AAA family ATP 100.0 1.7E-69 3.6E-74 681.0 49.5 541 550-1113 174-730 (733)
6 COG0464 SpoVK ATPases of the A 100.0 6.8E-56 1.5E-60 536.5 42.1 481 578-1098 6-488 (494)
7 COG1222 RPT1 ATP-dependent 26S 100.0 3.9E-52 8.5E-57 451.1 24.3 246 838-1094 145-393 (406)
8 KOG0738 AAA+-type ATPase [Post 100.0 1.5E-46 3.2E-51 408.7 23.1 273 839-1114 207-490 (491)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 3.8E-45 8.3E-50 415.4 22.0 229 840-1069 186-418 (802)
10 CHL00195 ycf46 Ycf46; Provisio 100.0 2.4E-42 5.3E-47 408.5 38.7 396 655-1110 81-482 (489)
11 KOG0734 AAA+-type ATPase conta 100.0 9.2E-43 2E-47 390.1 19.8 241 840-1092 300-540 (752)
12 KOG0739 AAA+-type ATPase [Post 100.0 1.1E-42 2.4E-47 365.8 16.7 274 838-1114 127-437 (439)
13 KOG0727 26S proteasome regulat 100.0 6.7E-42 1.5E-46 352.2 20.8 245 837-1092 148-395 (408)
14 KOG0728 26S proteasome regulat 100.0 4.8E-41 1E-45 345.5 20.1 250 838-1098 141-393 (404)
15 KOG0652 26S proteasome regulat 100.0 3.6E-40 7.8E-45 340.8 17.9 245 839-1094 166-413 (424)
16 KOG0741 AAA+-type ATPase [Post 100.0 1.2E-39 2.6E-44 364.9 20.1 441 547-1022 214-683 (744)
17 KOG0726 26S proteasome regulat 100.0 7.1E-40 1.5E-44 343.6 14.9 244 839-1093 180-426 (440)
18 COG1223 Predicted ATPase (AAA+ 100.0 2.9E-39 6.3E-44 334.8 17.8 239 840-1095 117-357 (368)
19 KOG0731 AAA+-type ATPase conta 100.0 1.2E-38 2.6E-43 380.8 23.2 242 839-1092 306-552 (774)
20 KOG0737 AAA+-type ATPase [Post 100.0 8.8E-39 1.9E-43 349.9 19.8 258 839-1098 87-364 (386)
21 KOG0729 26S proteasome regulat 100.0 6.8E-39 1.5E-43 332.2 16.6 245 838-1093 171-418 (435)
22 PTZ00454 26S protease regulato 100.0 4.9E-38 1.1E-42 365.0 23.9 246 839-1095 140-388 (398)
23 COG1222 RPT1 ATP-dependent 26S 100.0 2.9E-37 6.3E-42 335.5 19.5 248 550-825 147-394 (406)
24 PRK03992 proteasome-activating 100.0 9.7E-37 2.1E-41 356.3 23.3 251 839-1100 126-379 (389)
25 PTZ00361 26 proteosome regulat 100.0 2.1E-36 4.6E-41 352.9 22.4 244 839-1093 178-424 (438)
26 KOG0740 AAA+-type ATPase [Post 100.0 8.5E-37 1.8E-41 347.1 17.1 274 839-1115 148-426 (428)
27 COG0465 HflB ATP-dependent Zn 100.0 1.8E-36 3.9E-41 357.6 19.1 242 839-1092 145-389 (596)
28 TIGR01241 FtsH_fam ATP-depende 100.0 2.7E-34 5.9E-39 347.0 24.4 244 839-1094 50-296 (495)
29 KOG0741 AAA+-type ATPase [Post 100.0 7.2E-35 1.6E-39 326.6 16.2 260 846-1105 223-504 (744)
30 TIGR03689 pup_AAA proteasome A 100.0 7.8E-34 1.7E-38 335.2 24.7 259 839-1104 177-496 (512)
31 KOG0651 26S proteasome regulat 100.0 4.3E-35 9.3E-40 311.6 11.8 243 840-1093 128-373 (388)
32 KOG0730 AAA+-type ATPase [Post 100.0 7.2E-34 1.6E-38 329.7 19.7 223 840-1065 181-404 (693)
33 TIGR01242 26Sp45 26S proteasom 100.0 1.9E-33 4.1E-38 327.5 23.2 244 839-1093 117-363 (364)
34 CHL00176 ftsH cell division pr 100.0 4.5E-33 9.7E-38 339.4 23.5 242 840-1093 179-423 (638)
35 KOG0732 AAA+-type ATPase conta 100.0 2.1E-33 4.5E-38 343.4 17.8 259 840-1098 261-530 (1080)
36 TIGR02639 ClpA ATP-dependent C 100.0 1E-31 2.2E-36 337.7 33.7 455 552-1067 180-716 (731)
37 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.4E-32 2.9E-37 347.3 21.1 209 867-1092 1619-1876(2281)
38 PLN00020 ribulose bisphosphate 100.0 4.2E-31 9.1E-36 292.7 23.5 217 842-1063 113-352 (413)
39 PRK11034 clpA ATP-dependent Cl 100.0 2.5E-30 5.5E-35 320.3 32.9 456 553-1067 185-720 (758)
40 PRK10733 hflB ATP-dependent me 100.0 1.9E-31 4.1E-36 329.3 22.8 244 840-1095 148-394 (644)
41 TIGR01243 CDC48 AAA family ATP 100.0 4.3E-31 9.4E-36 333.1 24.3 259 839-1097 173-439 (733)
42 KOG0734 AAA+-type ATPase conta 100.0 3E-31 6.6E-36 297.9 17.4 247 548-826 298-544 (752)
43 KOG0732 AAA+-type ATPase conta 100.0 2.2E-30 4.7E-35 317.0 20.3 446 550-1026 261-727 (1080)
44 KOG0738 AAA+-type ATPase [Post 100.0 1.5E-29 3.3E-34 276.3 18.1 261 550-828 208-474 (491)
45 KOG0736 Peroxisome assembly fa 100.0 2E-29 4.3E-34 294.4 19.7 261 550-828 668-937 (953)
46 TIGR03345 VI_ClpV1 type VI sec 100.0 8.8E-28 1.9E-32 303.5 33.6 459 552-1066 185-834 (852)
47 KOG0731 AAA+-type ATPase conta 100.0 7.2E-29 1.6E-33 297.3 20.7 251 548-825 305-555 (774)
48 KOG0728 26S proteasome regulat 100.0 7E-29 1.5E-33 256.0 17.7 244 552-823 145-388 (404)
49 KOG0727 26S proteasome regulat 100.0 9.2E-29 2E-33 255.4 18.1 246 550-823 151-396 (408)
50 PTZ00454 26S protease regulato 100.0 1.8E-28 4E-33 285.1 21.5 248 550-825 141-388 (398)
51 KOG0652 26S proteasome regulat 100.0 7.2E-29 1.6E-33 257.2 15.7 245 550-823 167-412 (424)
52 CHL00095 clpC Clp protease ATP 100.0 5.4E-27 1.2E-31 298.2 36.2 461 552-1067 177-786 (821)
53 CHL00195 ycf46 Ycf46; Provisio 100.0 3.1E-28 6.8E-33 288.6 22.5 244 550-828 224-468 (489)
54 PF09262 PEX-1N: Peroxisome bi 100.0 1E-29 2.3E-34 224.9 6.1 77 94-170 1-80 (80)
55 KOG0737 AAA+-type ATPase [Post 100.0 1.3E-28 2.9E-33 270.1 16.0 233 547-799 85-318 (386)
56 PRK03992 proteasome-activating 100.0 1.2E-27 2.7E-32 279.8 21.3 251 550-828 127-377 (389)
57 COG1223 Predicted ATPase (AAA+ 100.0 4.4E-28 9.6E-33 251.9 15.2 238 550-823 117-355 (368)
58 KOG0726 26S proteasome regulat 99.9 2.7E-28 5.8E-33 256.7 10.1 246 550-824 181-427 (440)
59 KOG0739 AAA+-type ATPase [Post 99.9 7.1E-28 1.5E-32 254.4 12.9 225 550-795 129-353 (439)
60 TIGR03346 chaperone_ClpB ATP-d 99.9 1.1E-25 2.4E-30 286.9 33.4 461 552-1067 171-830 (852)
61 PTZ00361 26 proteosome regulat 99.9 6.1E-27 1.3E-31 273.7 19.9 247 550-824 179-425 (438)
62 PRK10865 protein disaggregatio 99.9 1.6E-25 3.4E-30 284.1 34.1 461 552-1067 176-833 (857)
63 COG0542 clpA ATP-binding subun 99.9 6.1E-26 1.3E-30 274.5 28.7 462 551-1066 167-758 (786)
64 COG0464 SpoVK ATPases of the A 99.9 3E-26 6.4E-31 278.0 21.8 248 550-826 238-486 (494)
65 KOG0729 26S proteasome regulat 99.9 1.3E-26 2.7E-31 241.2 13.8 246 550-824 173-419 (435)
66 KOG0735 AAA+-type ATPase [Post 99.9 3.2E-26 7E-31 265.1 18.3 227 551-797 664-890 (952)
67 COG0465 HflB ATP-dependent Zn 99.9 2.7E-26 5.8E-31 271.6 17.3 249 548-825 144-392 (596)
68 TIGR01241 FtsH_fam ATP-depende 99.9 5E-26 1.1E-30 275.2 20.1 247 550-825 51-297 (495)
69 CHL00176 ftsH cell division pr 99.9 1.5E-25 3.2E-30 273.7 20.5 246 550-824 179-424 (638)
70 TIGR01242 26Sp45 26S proteasom 99.9 2.9E-25 6.4E-30 258.8 20.7 246 550-823 118-363 (364)
71 TIGR03689 pup_AAA proteasome A 99.9 6.5E-25 1.4E-29 259.7 21.6 194 551-756 179-380 (512)
72 CHL00206 ycf2 Ycf2; Provisiona 99.9 2.6E-25 5.6E-30 282.0 17.9 215 581-826 1621-1880(2281)
73 KOG0651 26S proteasome regulat 99.9 1.5E-24 3.3E-29 231.4 10.8 244 551-822 129-372 (388)
74 PRK10733 hflB ATP-dependent me 99.9 1.9E-23 4.2E-28 258.4 20.7 249 548-825 146-394 (644)
75 KOG0740 AAA+-type ATPase [Post 99.9 2E-23 4.3E-28 238.2 16.3 257 550-826 149-407 (428)
76 PLN00020 ribulose bisphosphate 99.9 8.4E-23 1.8E-27 227.0 20.7 196 585-793 143-352 (413)
77 CHL00181 cbbX CbbX; Provisiona 99.9 8.1E-22 1.8E-26 221.0 18.3 216 844-1069 23-261 (287)
78 TIGR02880 cbbX_cfxQ probable R 99.9 3.2E-21 7E-26 216.4 18.3 234 845-1088 23-280 (284)
79 TIGR02881 spore_V_K stage V sp 99.9 6.4E-21 1.4E-25 212.3 17.3 217 842-1069 4-245 (261)
80 KOG0744 AAA+-type ATPase [Post 99.8 8.6E-21 1.9E-25 203.6 9.8 237 841-1092 139-413 (423)
81 PF00004 AAA: ATPase family as 99.8 2.4E-20 5.2E-25 184.9 11.0 130 881-1011 1-132 (132)
82 KOG0743 AAA+-type ATPase [Post 99.8 1.1E-19 2.4E-24 205.6 17.1 204 841-1054 198-412 (457)
83 TIGR02881 spore_V_K stage V sp 99.8 8.4E-19 1.8E-23 195.3 16.4 223 552-798 4-244 (261)
84 KOG0742 AAA+-type ATPase [Post 99.8 1.1E-18 2.4E-23 191.7 15.4 210 841-1060 352-590 (630)
85 PF05496 RuvB_N: Holliday junc 99.8 6.4E-18 1.4E-22 177.6 15.7 185 840-1054 20-221 (233)
86 CHL00181 cbbX CbbX; Provisiona 99.8 8.8E-18 1.9E-22 188.5 17.1 222 555-799 24-261 (287)
87 TIGR02880 cbbX_cfxQ probable R 99.8 9.7E-18 2.1E-22 188.3 17.2 221 555-798 23-259 (284)
88 PF09263 PEX-2N: Peroxisome bi 99.7 3.7E-18 8.1E-23 146.7 7.7 80 3-90 4-87 (87)
89 COG2256 MGS1 ATPase related to 99.7 8.7E-17 1.9E-21 179.2 17.9 227 840-1118 20-263 (436)
90 COG2255 RuvB Holliday junction 99.7 3.5E-16 7.5E-21 166.8 19.7 240 840-1120 22-281 (332)
91 TIGR00763 lon ATP-dependent pr 99.7 1.4E-16 3.1E-21 202.0 20.1 231 844-1092 320-585 (775)
92 PF00004 AAA: ATPase family as 99.7 6.9E-17 1.5E-21 160.0 13.4 130 593-739 1-131 (132)
93 PRK00080 ruvB Holliday junctio 99.7 8E-16 1.7E-20 177.2 22.3 237 839-1116 20-276 (328)
94 TIGR00635 ruvB Holliday juncti 99.7 1.6E-15 3.6E-20 173.0 21.9 231 842-1113 2-252 (305)
95 PF05496 RuvB_N: Holliday junc 99.7 8.5E-16 1.9E-20 161.7 17.6 195 552-788 22-225 (233)
96 KOG0744 AAA+-type ATPase [Post 99.7 3.6E-16 7.8E-21 168.4 14.7 245 549-821 137-412 (423)
97 KOG0743 AAA+-type ATPase [Post 99.7 3.6E-16 7.7E-21 177.4 15.4 208 551-783 198-411 (457)
98 TIGR02639 ClpA ATP-dependent C 99.7 6.6E-16 1.4E-20 195.0 19.3 245 841-1114 179-454 (731)
99 KOG0742 AAA+-type ATPase [Post 99.7 4.4E-16 9.5E-21 171.5 14.2 186 588-795 382-595 (630)
100 PRK00080 ruvB Holliday junctio 99.6 2.1E-14 4.7E-19 165.3 21.3 219 551-822 22-249 (328)
101 KOG2028 ATPase related to the 99.6 1.5E-14 3.2E-19 157.8 18.5 207 880-1119 164-394 (554)
102 PRK07003 DNA polymerase III su 99.6 2E-14 4.2E-19 173.7 20.4 187 838-1059 10-225 (830)
103 TIGR00635 ruvB Holliday juncti 99.6 3.2E-14 7E-19 162.4 20.4 218 552-822 2-228 (305)
104 PRK14956 DNA polymerase III su 99.6 1.3E-14 2.9E-19 169.9 17.4 184 838-1056 12-224 (484)
105 PRK12323 DNA polymerase III su 99.6 8E-15 1.7E-19 175.2 14.8 186 838-1058 10-229 (700)
106 PRK14962 DNA polymerase III su 99.6 2.5E-14 5.5E-19 170.4 18.5 206 838-1093 8-242 (472)
107 COG2255 RuvB Holliday junction 99.6 4.8E-14 1E-18 150.6 18.2 202 552-795 24-234 (332)
108 PRK11034 clpA ATP-dependent Cl 99.6 2.3E-14 5E-19 178.7 18.4 223 841-1092 183-432 (758)
109 KOG1051 Chaperone HSP104 and r 99.6 2.1E-13 4.7E-18 168.3 26.4 360 591-989 209-710 (898)
110 PRK14960 DNA polymerase III su 99.6 7.7E-14 1.7E-18 167.2 21.4 184 838-1056 9-221 (702)
111 TIGR02902 spore_lonB ATP-depen 99.6 2E-14 4.4E-19 174.6 16.7 212 839-1093 60-332 (531)
112 TIGR00763 lon ATP-dependent pr 99.6 3.8E-14 8.2E-19 180.1 18.9 213 555-797 321-559 (775)
113 PRK14961 DNA polymerase III su 99.6 9.9E-14 2.1E-18 161.7 20.5 204 838-1091 10-242 (363)
114 PRK06645 DNA polymerase III su 99.6 1E-13 2.3E-18 165.7 20.8 187 838-1059 15-234 (507)
115 COG0466 Lon ATP-dependent Lon 99.6 4.2E-14 9E-19 167.4 16.9 212 555-795 324-560 (782)
116 PRK13342 recombination factor 99.6 7.1E-14 1.5E-18 165.8 18.9 200 839-1093 7-219 (413)
117 PRK14949 DNA polymerase III su 99.6 1.5E-13 3.2E-18 169.3 21.8 187 838-1059 10-225 (944)
118 COG0466 Lon ATP-dependent Lon 99.6 1E-13 2.2E-18 164.1 19.6 223 845-1094 324-585 (782)
119 PRK14958 DNA polymerase III su 99.5 9.6E-14 2.1E-18 167.2 18.7 205 838-1092 10-243 (509)
120 KOG2004 Mitochondrial ATP-depe 99.5 8E-14 1.7E-18 163.6 17.2 204 844-1066 411-653 (906)
121 PRK14964 DNA polymerase III su 99.5 1.1E-13 2.5E-18 164.0 17.8 187 838-1059 7-222 (491)
122 PRK07003 DNA polymerase III su 99.5 3.3E-13 7.1E-18 163.3 21.6 196 552-791 14-227 (830)
123 PRK14956 DNA polymerase III su 99.5 2.1E-13 4.4E-18 160.0 18.9 195 552-790 16-228 (484)
124 PRK07994 DNA polymerase III su 99.5 3.3E-13 7.1E-18 164.5 21.4 184 839-1057 11-223 (647)
125 TIGR03345 VI_ClpV1 type VI sec 99.5 1.8E-13 3.9E-18 174.0 19.9 184 841-1047 184-390 (852)
126 KOG0989 Replication factor C, 99.5 3.2E-13 7E-18 145.9 18.5 182 837-1053 29-226 (346)
127 PRK07940 DNA polymerase III su 99.5 1.2E-13 2.6E-18 161.0 16.2 188 841-1056 2-216 (394)
128 PRK05563 DNA polymerase III su 99.5 2.6E-13 5.6E-18 165.6 19.8 184 839-1057 11-223 (559)
129 PRK10865 protein disaggregatio 99.5 8E-14 1.7E-18 177.8 15.9 165 841-1028 175-357 (857)
130 PRK05342 clpX ATP-dependent pr 99.5 2.5E-13 5.4E-18 159.1 17.9 237 846-1088 73-400 (412)
131 PRK10787 DNA-binding ATP-depen 99.5 2.6E-13 5.6E-18 170.8 18.9 226 845-1093 323-582 (784)
132 PRK08691 DNA polymerase III su 99.5 2.2E-13 4.7E-18 165.0 17.0 187 838-1059 10-225 (709)
133 PLN03025 replication factor C 99.5 2.7E-13 5.9E-18 155.5 17.1 182 837-1057 6-200 (319)
134 PRK04195 replication factor C 99.5 2.6E-13 5.7E-18 164.0 17.8 189 838-1059 8-204 (482)
135 PTZ00112 origin recognition co 99.5 6.1E-13 1.3E-17 160.8 20.3 222 554-822 755-1005(1164)
136 TIGR00390 hslU ATP-dependent p 99.5 6.7E-13 1.4E-17 152.1 19.7 241 845-1092 13-429 (441)
137 PRK14951 DNA polymerase III su 99.5 3.7E-13 8E-18 163.8 18.2 184 838-1056 10-227 (618)
138 KOG0989 Replication factor C, 99.5 4.3E-13 9.2E-18 144.9 16.1 196 550-788 32-234 (346)
139 PRK12323 DNA polymerase III su 99.5 4.1E-13 8.8E-18 160.7 17.5 195 552-790 14-231 (700)
140 TIGR02928 orc1/cdc6 family rep 99.5 1.4E-12 3E-17 152.7 21.2 226 555-823 16-274 (365)
141 TIGR02928 orc1/cdc6 family rep 99.5 1.3E-12 2.7E-17 153.1 20.5 220 844-1094 15-275 (365)
142 PRK14963 DNA polymerase III su 99.5 5.5E-13 1.2E-17 160.3 17.7 174 838-1045 8-209 (504)
143 PRK14962 DNA polymerase III su 99.5 1.2E-12 2.7E-17 156.0 19.9 190 552-789 12-223 (472)
144 PRK05201 hslU ATP-dependent pr 99.5 6.9E-13 1.5E-17 152.0 16.9 176 845-1022 16-345 (443)
145 PRK00149 dnaA chromosomal repl 99.5 6.4E-13 1.4E-17 159.5 17.3 273 591-932 149-426 (450)
146 PRK14960 DNA polymerase III su 99.5 9.4E-13 2E-17 158.0 18.5 196 551-790 12-225 (702)
147 PRK12402 replication factor C 99.5 9.3E-13 2E-17 152.4 17.8 209 838-1092 9-248 (337)
148 PRK07133 DNA polymerase III su 99.5 3.2E-12 6.9E-17 156.6 23.0 191 838-1057 12-222 (725)
149 CHL00095 clpC Clp protease ATP 99.5 3.6E-13 7.9E-18 172.2 15.3 185 841-1048 176-382 (821)
150 PRK14952 DNA polymerase III su 99.5 1.3E-12 2.7E-17 158.7 19.1 185 838-1057 7-222 (584)
151 COG2256 MGS1 ATPase related to 99.5 1.3E-12 2.9E-17 146.1 17.4 157 591-790 49-218 (436)
152 TIGR02397 dnaX_nterm DNA polym 99.5 1.3E-12 2.9E-17 152.3 18.4 183 839-1056 9-220 (355)
153 PRK14958 DNA polymerase III su 99.5 1.6E-12 3.5E-17 156.6 19.2 195 552-790 14-226 (509)
154 TIGR03346 chaperone_ClpB ATP-d 99.5 4.8E-13 1E-17 171.5 15.6 184 841-1047 170-376 (852)
155 PRK00411 cdc6 cell division co 99.5 3.6E-12 7.9E-17 150.9 21.8 226 554-823 30-282 (394)
156 TIGR00382 clpX endopeptidase C 99.5 1.5E-12 3.2E-17 151.7 18.1 237 845-1087 78-405 (413)
157 PRK14957 DNA polymerase III su 99.5 1.2E-12 2.6E-17 157.6 17.7 184 839-1057 11-223 (546)
158 TIGR02902 spore_lonB ATP-depen 99.5 1.1E-12 2.4E-17 159.5 17.8 229 551-821 62-330 (531)
159 PRK14949 DNA polymerase III su 99.4 2.1E-12 4.5E-17 159.3 19.9 194 552-789 14-225 (944)
160 PRK14088 dnaA chromosomal repl 99.4 1.2E-12 2.6E-17 155.8 17.3 275 591-932 131-410 (440)
161 PRK00411 cdc6 cell division co 99.4 2.4E-12 5.3E-17 152.3 19.5 222 844-1095 30-284 (394)
162 PRK14964 DNA polymerase III su 99.4 2.1E-12 4.6E-17 153.3 18.7 195 552-790 11-223 (491)
163 PRK06893 DNA replication initi 99.4 2.5E-12 5.4E-17 140.5 17.8 165 592-789 41-208 (229)
164 PRK14969 DNA polymerase III su 99.4 4.6E-12 9.9E-17 153.7 21.8 185 839-1058 11-224 (527)
165 KOG2004 Mitochondrial ATP-depe 99.4 1.2E-12 2.7E-17 153.8 15.9 207 554-790 411-643 (906)
166 PRK07764 DNA polymerase III su 99.4 1.8E-12 3.9E-17 163.0 18.4 184 838-1056 9-223 (824)
167 PRK13341 recombination factor 99.4 2E-12 4.4E-17 160.8 18.6 150 839-1026 23-182 (725)
168 PRK08691 DNA polymerase III su 99.4 3.4E-12 7.4E-17 154.8 19.8 192 552-791 14-227 (709)
169 PRK14959 DNA polymerase III su 99.4 4.5E-12 9.7E-17 153.3 20.7 174 838-1045 10-212 (624)
170 PRK07994 DNA polymerase III su 99.4 3.4E-12 7.4E-17 155.7 19.7 196 551-790 13-226 (647)
171 PRK06645 DNA polymerase III su 99.4 4.1E-12 9E-17 152.1 20.1 193 552-792 19-237 (507)
172 PRK14961 DNA polymerase III su 99.4 4.5E-12 9.6E-17 147.9 19.8 191 552-790 14-226 (363)
173 PRK14965 DNA polymerase III su 99.4 2E-12 4.4E-17 158.6 17.7 184 838-1056 10-222 (576)
174 PRK05896 DNA polymerase III su 99.4 1.7E-12 3.8E-17 156.0 16.6 184 838-1056 10-222 (605)
175 PTZ00112 origin recognition co 99.4 3.8E-12 8.3E-17 154.0 18.7 218 844-1093 755-1006(1164)
176 TIGR00362 DnaA chromosomal rep 99.4 3.4E-12 7.4E-17 151.4 18.2 188 879-1092 137-336 (405)
177 PHA02544 44 clamp loader, smal 99.4 1.9E-12 4.1E-17 148.6 15.5 160 836-1025 13-173 (316)
178 PLN03025 replication factor C 99.4 4.2E-12 9.1E-17 145.7 18.0 189 552-786 11-202 (319)
179 TIGR00362 DnaA chromosomal rep 99.4 2.3E-12 5E-17 152.9 16.2 194 591-822 137-336 (405)
180 TIGR02903 spore_lon_C ATP-depe 99.4 9.3E-12 2E-16 153.7 22.0 224 840-1095 150-432 (615)
181 PRK14970 DNA polymerase III su 99.4 6E-12 1.3E-16 147.5 18.9 173 838-1044 11-200 (367)
182 PRK06647 DNA polymerase III su 99.4 1E-11 2.3E-16 151.0 21.5 185 838-1057 10-223 (563)
183 PRK14086 dnaA chromosomal repl 99.4 5.4E-12 1.2E-16 151.9 18.7 195 592-823 316-515 (617)
184 PRK14953 DNA polymerase III su 99.4 5.9E-12 1.3E-16 151.0 18.8 184 838-1056 10-222 (486)
185 PRK04195 replication factor C 99.4 7.2E-12 1.6E-16 151.6 19.7 186 551-788 11-203 (482)
186 PRK08451 DNA polymerase III su 99.4 5.9E-12 1.3E-16 150.8 18.4 187 838-1059 8-223 (535)
187 PRK00149 dnaA chromosomal repl 99.4 4.7E-12 1E-16 152.0 17.5 189 879-1093 149-349 (450)
188 PRK08084 DNA replication initi 99.4 9.5E-12 2.1E-16 136.4 17.8 167 591-792 46-217 (235)
189 COG2812 DnaX DNA polymerase II 99.4 6.7E-12 1.4E-16 148.4 17.7 194 838-1060 10-226 (515)
190 PRK14955 DNA polymerase III su 99.4 8.7E-12 1.9E-16 147.1 18.7 174 838-1045 10-220 (397)
191 PRK06305 DNA polymerase III su 99.4 2E-11 4.3E-16 145.6 21.9 173 839-1045 12-214 (451)
192 PRK14963 DNA polymerase III su 99.4 1.3E-11 2.7E-16 148.6 20.0 193 552-789 12-222 (504)
193 PF05673 DUF815: Protein of un 99.4 1.6E-11 3.4E-16 131.5 18.4 196 550-787 23-244 (249)
194 PF05673 DUF815: Protein of un 99.4 1.1E-11 2.3E-16 132.7 17.0 188 840-1055 23-242 (249)
195 TIGR03420 DnaA_homol_Hda DnaA 99.4 1.3E-11 2.7E-16 134.6 17.9 167 590-792 38-209 (226)
196 PRK10787 DNA-binding ATP-depen 99.4 6.8E-12 1.5E-16 158.1 17.7 231 555-820 323-579 (784)
197 PRK14951 DNA polymerase III su 99.4 1E-11 2.2E-16 151.4 18.5 192 552-791 14-232 (618)
198 PRK14948 DNA polymerase III su 99.4 3.4E-11 7.5E-16 148.1 23.3 184 838-1056 10-224 (620)
199 PRK14957 DNA polymerase III su 99.4 1.6E-11 3.4E-16 147.9 19.4 195 552-790 14-226 (546)
200 PRK14952 DNA polymerase III su 99.4 1.7E-11 3.6E-16 149.1 19.7 195 552-790 11-225 (584)
201 PRK07764 DNA polymerase III su 99.4 1.3E-11 2.9E-16 155.3 19.4 194 552-789 13-226 (824)
202 PRK05896 DNA polymerase III su 99.4 1.7E-11 3.8E-16 147.5 19.5 194 552-789 14-225 (605)
203 PRK05563 DNA polymerase III su 99.4 1.4E-11 3E-16 150.5 19.0 191 552-790 14-226 (559)
204 PRK13342 recombination factor 99.4 1.7E-11 3.6E-16 145.6 18.6 160 591-789 37-201 (413)
205 PRK12422 chromosomal replicati 99.3 9.1E-12 2E-16 147.9 16.0 196 591-823 142-343 (445)
206 PHA02544 44 clamp loader, smal 99.3 2.3E-11 5E-16 139.6 18.8 175 552-775 19-201 (316)
207 TIGR02397 dnaX_nterm DNA polym 99.3 2.2E-11 4.8E-16 142.1 18.8 191 552-790 12-224 (355)
208 PRK12402 replication factor C 99.3 2.6E-11 5.6E-16 140.4 19.2 191 552-786 13-228 (337)
209 PRK07133 DNA polymerase III su 99.3 2E-11 4.3E-16 149.7 18.4 190 552-789 16-224 (725)
210 PRK08451 DNA polymerase III su 99.3 2.7E-11 6E-16 145.1 19.2 193 552-792 12-226 (535)
211 PRK14969 DNA polymerase III su 99.3 2.2E-11 4.7E-16 147.8 18.6 192 552-791 14-227 (527)
212 PRK09111 DNA polymerase III su 99.3 2.5E-11 5.4E-16 148.4 19.0 191 838-1057 18-236 (598)
213 PRK14954 DNA polymerase III su 99.3 6.7E-11 1.4E-15 144.8 22.7 174 838-1045 10-220 (620)
214 PRK05342 clpX ATP-dependent pr 99.3 4.1E-11 8.8E-16 140.6 19.9 232 556-796 73-382 (412)
215 PRK14965 DNA polymerase III su 99.3 2.8E-11 6.1E-16 148.5 19.0 191 552-790 14-226 (576)
216 TIGR03420 DnaA_homol_Hda DnaA 99.3 3.5E-11 7.5E-16 131.2 17.7 197 847-1090 20-225 (226)
217 PRK13341 recombination factor 99.3 2.3E-11 5E-16 151.4 18.1 161 591-790 53-223 (725)
218 PRK14959 DNA polymerase III su 99.3 3.8E-11 8.2E-16 145.4 19.3 192 552-788 14-224 (624)
219 PRK14970 DNA polymerase III su 99.3 5E-11 1.1E-15 139.7 19.4 191 552-790 15-215 (367)
220 PRK00440 rfc replication facto 99.3 5.3E-11 1.1E-15 136.7 19.1 205 837-1093 10-226 (319)
221 PRK12422 chromosomal replicati 99.3 3.1E-11 6.7E-16 143.5 17.5 201 879-1102 142-357 (445)
222 PRK06893 DNA replication initi 99.3 2.9E-11 6.2E-16 132.1 15.8 180 880-1091 41-228 (229)
223 PF00308 Bac_DnaA: Bacterial d 99.3 1.9E-11 4.2E-16 132.3 14.3 175 591-791 35-215 (219)
224 PRK14088 dnaA chromosomal repl 99.3 1.7E-11 3.7E-16 146.0 14.9 166 879-1057 131-308 (440)
225 PRK08727 hypothetical protein; 99.3 4.3E-11 9.3E-16 131.1 16.9 165 591-792 42-212 (233)
226 PRK08903 DnaA regulatory inact 99.3 4.1E-11 8.9E-16 130.9 16.6 162 589-792 41-207 (227)
227 PRK14953 DNA polymerase III su 99.3 6.6E-11 1.4E-15 142.0 19.5 193 552-789 14-225 (486)
228 PRK09111 DNA polymerase III su 99.3 6.6E-11 1.4E-15 144.7 19.7 191 552-790 22-239 (598)
229 PRK14950 DNA polymerase III su 99.3 4.5E-11 9.8E-16 147.4 18.3 184 838-1056 10-223 (585)
230 COG1474 CDC6 Cdc6-related prot 99.3 1E-10 2.2E-15 135.4 19.9 217 846-1095 19-267 (366)
231 PRK06647 DNA polymerase III su 99.3 5.8E-11 1.3E-15 144.6 18.6 194 552-789 14-225 (563)
232 PRK05642 DNA replication initi 99.3 5.5E-11 1.2E-15 130.2 16.7 167 591-793 46-217 (234)
233 PRK14087 dnaA chromosomal repl 99.3 7E-11 1.5E-15 140.9 18.8 197 591-823 142-348 (450)
234 COG1474 CDC6 Cdc6-related prot 99.3 1.1E-10 2.4E-15 135.1 19.8 219 556-820 19-262 (366)
235 PRK06305 DNA polymerase III su 99.3 1.1E-10 2.5E-15 139.2 19.5 194 552-789 15-227 (451)
236 PRK07940 DNA polymerase III su 99.3 8.1E-11 1.8E-15 137.5 17.3 190 552-783 3-213 (394)
237 PRK08903 DnaA regulatory inact 99.3 1.8E-10 3.9E-15 125.8 19.0 199 841-1091 15-224 (227)
238 PRK00440 rfc replication facto 99.3 1.4E-10 3E-15 133.1 18.9 192 552-789 15-208 (319)
239 PRK14086 dnaA chromosomal repl 99.3 9.2E-11 2E-15 141.4 17.7 188 880-1093 316-515 (617)
240 TIGR00390 hslU ATP-dependent p 99.2 1.3E-10 2.8E-15 133.6 17.4 136 655-795 247-407 (441)
241 TIGR02640 gas_vesic_GvpN gas v 99.2 8.4E-11 1.8E-15 131.1 15.0 132 878-1025 21-198 (262)
242 PRK14971 DNA polymerase III su 99.2 5.3E-10 1.2E-14 137.8 23.1 183 839-1056 12-224 (614)
243 PRK08084 DNA replication initi 99.2 2.8E-10 6.1E-15 124.8 18.6 179 879-1091 46-234 (235)
244 COG2812 DnaX DNA polymerase II 99.2 4.7E-11 1E-15 141.3 13.3 199 552-792 14-228 (515)
245 TIGR00382 clpX endopeptidase C 99.2 1.5E-10 3.3E-15 135.0 16.6 198 590-796 116-388 (413)
246 PRK14948 DNA polymerase III su 99.2 2.8E-10 6E-15 140.2 19.2 189 552-788 14-226 (620)
247 PRK14955 DNA polymerase III su 99.2 2.5E-10 5.4E-15 134.8 18.1 191 552-790 14-234 (397)
248 PRK05201 hslU ATP-dependent pr 99.2 1.6E-10 3.5E-15 132.7 15.7 136 655-795 249-409 (443)
249 PRK14954 DNA polymerase III su 99.2 4E-10 8.6E-15 138.1 19.5 196 552-791 14-235 (620)
250 PRK06620 hypothetical protein; 99.2 2.5E-10 5.4E-15 123.1 15.6 146 591-789 45-194 (214)
251 TIGR02903 spore_lon_C ATP-depe 99.2 3E-10 6.6E-15 140.4 18.3 238 551-822 151-429 (615)
252 PRK14950 DNA polymerase III su 99.2 5.1E-10 1.1E-14 138.2 19.7 194 552-789 14-226 (585)
253 PRK13407 bchI magnesium chelat 99.2 1.7E-10 3.7E-15 131.6 14.1 157 840-1025 4-216 (334)
254 PRK08727 hypothetical protein; 99.2 5.3E-10 1.2E-14 122.5 17.1 177 879-1092 42-230 (233)
255 PRK05642 DNA replication initi 99.2 3.6E-10 7.7E-15 123.9 15.7 179 879-1091 46-233 (234)
256 COG2607 Predicted ATPase (AAA+ 99.2 4.8E-10 1E-14 117.6 15.4 173 832-1032 48-246 (287)
257 COG0593 DnaA ATPase involved i 99.2 5.5E-10 1.2E-14 128.9 16.9 196 591-824 114-314 (408)
258 PRK14087 dnaA chromosomal repl 99.2 6.9E-10 1.5E-14 132.5 18.3 190 879-1092 142-347 (450)
259 COG1224 TIP49 DNA helicase TIP 99.2 1.4E-09 3E-14 119.7 18.8 66 843-916 38-105 (450)
260 PRK09087 hypothetical protein; 99.2 2.7E-10 5.9E-15 123.9 13.3 171 592-822 46-221 (226)
261 PRK14971 DNA polymerase III su 99.1 1E-09 2.2E-14 135.4 19.5 191 552-790 15-228 (614)
262 PRK09112 DNA polymerase III su 99.1 1.3E-09 2.9E-14 125.7 19.2 191 840-1060 19-246 (351)
263 TIGR02640 gas_vesic_GvpN gas v 99.1 1.2E-09 2.5E-14 121.9 18.1 139 591-754 22-198 (262)
264 cd00009 AAA The AAA+ (ATPases 99.1 3.5E-10 7.6E-15 113.0 12.5 120 878-1010 19-150 (151)
265 TIGR01650 PD_CobS cobaltochela 99.1 2.7E-10 5.9E-15 128.1 12.1 139 878-1027 64-235 (327)
266 KOG2028 ATPase related to the 99.1 8.2E-10 1.8E-14 121.2 15.2 184 592-822 164-367 (554)
267 PRK07471 DNA polymerase III su 99.1 4.7E-09 1E-13 121.9 22.6 180 840-1050 15-235 (365)
268 PHA02244 ATPase-like protein 99.1 3.5E-09 7.5E-14 120.3 20.9 124 878-1017 119-266 (383)
269 KOG1969 DNA replication checkp 99.1 9.9E-10 2.1E-14 130.3 16.8 208 836-1065 263-518 (877)
270 COG2607 Predicted ATPase (AAA+ 99.1 3.5E-09 7.6E-14 111.2 19.0 197 551-789 57-278 (287)
271 TIGR00678 holB DNA polymerase 99.1 7.6E-10 1.6E-14 117.3 14.0 143 877-1045 13-183 (188)
272 PRK06620 hypothetical protein; 99.1 7.2E-10 1.6E-14 119.6 13.6 164 879-1090 45-213 (214)
273 TIGR01650 PD_CobS cobaltochela 99.1 4.6E-10 1E-14 126.3 12.4 141 590-754 64-233 (327)
274 PF00308 Bac_DnaA: Bacterial d 99.1 8E-10 1.7E-14 119.8 13.3 165 879-1057 35-211 (219)
275 PRK05564 DNA polymerase III su 99.1 1.9E-09 4.2E-14 123.5 16.9 172 842-1048 2-185 (313)
276 COG1224 TIP49 DNA helicase TIP 99.1 3.2E-09 7E-14 116.9 17.1 130 655-823 291-432 (450)
277 KOG0991 Replication factor C, 99.1 8.5E-10 1.8E-14 114.7 11.5 184 837-1056 20-213 (333)
278 CHL00081 chlI Mg-protoporyphyr 99.1 1.7E-09 3.7E-14 123.7 14.9 156 840-1025 13-232 (350)
279 TIGR00678 holB DNA polymerase 99.0 2.4E-09 5.3E-14 113.4 13.9 150 589-776 13-184 (188)
280 COG1219 ClpX ATP-dependent pro 99.0 3.4E-09 7.4E-14 115.1 14.9 128 846-975 63-203 (408)
281 PF07724 AAA_2: AAA domain (Cd 99.0 2.1E-10 4.6E-15 119.1 5.6 114 877-992 2-132 (171)
282 TIGR02030 BchI-ChlI magnesium 99.0 3.4E-09 7.5E-14 121.3 15.9 155 842-1025 2-219 (337)
283 KOG0991 Replication factor C, 99.0 2.3E-09 5E-14 111.5 12.7 179 552-775 25-206 (333)
284 PRK11331 5-methylcytosine-spec 99.0 2.3E-09 5E-14 124.8 14.3 124 878-1014 194-361 (459)
285 TIGR03015 pepcterm_ATPase puta 99.0 1.7E-08 3.8E-13 113.0 21.1 195 591-822 44-265 (269)
286 PRK07399 DNA polymerase III su 99.0 2.1E-09 4.5E-14 122.5 13.3 181 842-1053 2-221 (314)
287 COG0542 clpA ATP-binding subun 99.0 2E-09 4.3E-14 132.1 13.8 166 841-1028 167-349 (786)
288 COG1220 HslU ATP-dependent pro 99.0 8.2E-09 1.8E-13 112.9 16.1 82 939-1022 252-346 (444)
289 cd00009 AAA The AAA+ (ATPases 99.0 5E-09 1.1E-13 104.6 13.4 129 589-740 18-151 (151)
290 TIGR02974 phageshock_pspF psp 99.0 4.9E-09 1.1E-13 120.5 14.7 201 556-792 1-233 (329)
291 PF07728 AAA_5: AAA domain (dy 99.0 2.6E-10 5.6E-15 114.6 3.5 109 880-1003 1-139 (139)
292 TIGR00602 rad24 checkpoint pro 99.0 5.9E-09 1.3E-13 127.7 15.8 231 837-1095 77-357 (637)
293 KOG1969 DNA replication checkp 99.0 1.1E-08 2.4E-13 121.5 17.2 179 586-793 322-516 (877)
294 PRK04132 replication factor C 99.0 2E-08 4.3E-13 126.1 20.5 147 878-1046 564-724 (846)
295 PRK05707 DNA polymerase III su 99.0 4.9E-09 1.1E-13 120.0 13.7 151 876-1048 20-198 (328)
296 smart00382 AAA ATPases associa 99.0 3.7E-09 8.1E-14 104.5 11.1 128 878-1012 2-147 (148)
297 COG0714 MoxR-like ATPases [Gen 99.0 3.9E-09 8.4E-14 121.9 12.5 131 878-1025 43-203 (329)
298 PRK13531 regulatory ATPase Rav 98.9 1.6E-08 3.6E-13 118.7 17.5 151 846-1024 22-193 (498)
299 PRK11608 pspF phage shock prot 98.9 9.7E-09 2.1E-13 118.1 15.4 201 553-792 5-240 (326)
300 TIGR02442 Cob-chelat-sub cobal 98.9 7.6E-09 1.6E-13 128.9 15.4 155 842-1025 2-214 (633)
301 TIGR03015 pepcterm_ATPase puta 98.9 3.3E-08 7.2E-13 110.7 19.0 190 880-1094 45-267 (269)
302 COG0470 HolB ATPase involved i 98.9 9E-09 2E-13 118.4 14.5 149 845-1022 2-178 (325)
303 PRK04132 replication factor C 98.9 1.1E-08 2.3E-13 128.4 15.7 167 592-789 566-736 (846)
304 PRK09087 hypothetical protein; 98.9 1.8E-08 3.9E-13 109.7 15.6 168 880-1093 46-222 (226)
305 PRK09112 DNA polymerase III su 98.9 3.1E-08 6.7E-13 114.5 18.1 189 552-785 21-241 (351)
306 PRK08058 DNA polymerase III su 98.9 2.1E-08 4.5E-13 115.5 16.6 149 842-1023 3-180 (329)
307 COG5271 MDN1 AAA ATPase contai 98.9 5.7E-08 1.2E-12 121.3 20.8 139 591-755 1544-1704(4600)
308 COG1219 ClpX ATP-dependent pro 98.9 2.3E-08 5E-13 108.8 15.5 199 591-796 98-371 (408)
309 COG0593 DnaA ATPase involved i 98.9 2.8E-08 6E-13 114.9 17.1 170 877-1060 112-292 (408)
310 KOG0745 Putative ATP-dependent 98.9 2.8E-08 6.1E-13 111.9 16.4 197 591-796 227-512 (564)
311 PF06068 TIP49: TIP49 C-termin 98.9 2.4E-08 5.1E-13 112.4 15.6 66 843-916 23-90 (398)
312 PRK13407 bchI magnesium chelat 98.9 1.3E-08 2.8E-13 116.4 13.8 81 656-753 129-215 (334)
313 PF01078 Mg_chelatase: Magnesi 98.9 1.7E-09 3.8E-14 113.8 6.0 45 843-902 2-46 (206)
314 TIGR02030 BchI-ChlI magnesium 98.9 1.9E-08 4.1E-13 115.2 14.6 143 656-826 132-312 (337)
315 CHL00081 chlI Mg-protoporyphyr 98.9 2.6E-08 5.7E-13 114.0 15.5 171 551-753 14-231 (350)
316 TIGR01817 nifA Nif-specific re 98.9 2.3E-08 4.9E-13 123.1 15.8 203 551-792 193-428 (534)
317 KOG0745 Putative ATP-dependent 98.9 4.7E-08 1E-12 110.1 16.7 96 879-974 227-331 (564)
318 COG1221 PspF Transcriptional r 98.9 8.9E-09 1.9E-13 118.6 11.3 212 551-795 75-312 (403)
319 PRK05564 DNA polymerase III su 98.9 5.6E-08 1.2E-12 111.5 17.7 177 552-777 2-184 (313)
320 PRK07471 DNA polymerase III su 98.9 5.6E-08 1.2E-12 113.0 17.7 184 552-781 17-235 (365)
321 COG3829 RocR Transcriptional r 98.9 3.3E-09 7.2E-14 123.7 7.2 125 841-990 242-391 (560)
322 COG5271 MDN1 AAA ATPase contai 98.8 3.3E-08 7.3E-13 123.3 15.1 135 591-754 889-1047(4600)
323 PF07724 AAA_2: AAA domain (Cd 98.8 1.1E-08 2.5E-13 106.3 9.4 122 590-720 3-131 (171)
324 COG2204 AtoC Response regulato 98.8 1.8E-08 3.9E-13 118.1 11.6 205 552-792 139-374 (464)
325 PRK13531 regulatory ATPase Rav 98.8 6.2E-08 1.4E-12 113.9 16.0 140 590-752 39-192 (498)
326 COG3604 FhlA Transcriptional r 98.8 2.3E-08 5.1E-13 115.2 11.6 211 550-795 219-458 (550)
327 PF07728 AAA_5: AAA domain (dy 98.8 1.5E-08 3.3E-13 101.7 8.7 117 592-732 1-139 (139)
328 PRK15429 formate hydrogenlyase 98.8 7.4E-08 1.6E-12 121.9 16.8 205 551-792 373-609 (686)
329 PRK06964 DNA polymerase III su 98.8 5E-08 1.1E-12 111.8 13.6 133 876-1024 19-203 (342)
330 PRK11331 5-methylcytosine-spec 98.8 4.3E-08 9.3E-13 114.4 13.1 138 590-744 194-362 (459)
331 PRK10820 DNA-binding transcrip 98.8 8.8E-08 1.9E-12 117.0 16.6 208 551-792 201-437 (520)
332 PRK05022 anaerobic nitric oxid 98.8 1.6E-07 3.5E-12 114.6 18.9 206 553-794 186-422 (509)
333 PF13177 DNA_pol3_delta2: DNA 98.8 8.3E-08 1.8E-12 99.1 13.9 133 848-1011 1-160 (162)
334 PRK11388 DNA-binding transcrip 98.8 4.5E-08 9.8E-13 123.1 14.1 125 841-990 322-467 (638)
335 PF06068 TIP49: TIP49 C-termin 98.8 8.1E-08 1.8E-12 108.1 14.4 102 656-785 279-392 (398)
336 PRK05707 DNA polymerase III su 98.8 1.8E-07 3.8E-12 107.4 17.4 156 590-776 22-196 (328)
337 PRK11388 DNA-binding transcrip 98.8 7.7E-08 1.7E-12 121.0 15.9 202 551-791 322-553 (638)
338 TIGR00764 lon_rel lon-related 98.8 9.3E-08 2E-12 118.1 16.0 51 840-905 14-64 (608)
339 smart00382 AAA ATPases associa 98.8 7.5E-08 1.6E-12 95.1 12.3 76 590-668 2-91 (148)
340 PHA02244 ATPase-like protein 98.7 1.9E-07 4.2E-12 106.3 16.7 126 591-743 120-263 (383)
341 PRK15424 propionate catabolism 98.7 1.3E-07 2.8E-12 114.6 16.0 125 841-990 216-373 (538)
342 COG3829 RocR Transcriptional r 98.7 5.2E-08 1.1E-12 114.0 11.9 204 550-790 241-477 (560)
343 TIGR00368 Mg chelatase-related 98.7 1.2E-07 2.7E-12 114.0 15.4 143 842-1015 190-394 (499)
344 PRK06871 DNA polymerase III su 98.7 1.9E-07 4.1E-12 106.4 16.0 129 876-1024 22-178 (325)
345 TIGR02329 propionate_PrpR prop 98.7 1.1E-07 2.4E-12 115.3 14.9 125 841-990 209-358 (526)
346 PRK15424 propionate catabolism 98.7 1.9E-07 4.1E-12 113.2 16.8 207 552-791 217-464 (538)
347 PRK07399 DNA polymerase III su 98.7 2.5E-07 5.5E-12 105.5 17.0 188 553-786 3-223 (314)
348 PF05621 TniB: Bacterial TniB 98.7 4.9E-07 1.1E-11 100.3 18.6 217 562-818 41-284 (302)
349 TIGR02442 Cob-chelat-sub cobal 98.7 1.2E-07 2.7E-12 118.1 15.4 145 591-752 26-212 (633)
350 TIGR02329 propionate_PrpR prop 98.7 8.3E-08 1.8E-12 116.3 13.3 206 551-792 209-450 (526)
351 KOG2035 Replication factor C, 98.7 2.4E-07 5.1E-12 99.4 14.9 158 591-779 35-224 (351)
352 PRK07993 DNA polymerase III su 98.7 1.7E-07 3.6E-12 107.8 14.9 151 876-1049 22-200 (334)
353 TIGR01817 nifA Nif-specific re 98.7 2.3E-07 5E-12 114.2 17.2 193 841-1060 193-426 (534)
354 COG0714 MoxR-like ATPases [Gen 98.7 4.2E-08 9.1E-13 113.3 10.0 140 590-752 43-201 (329)
355 KOG1514 Origin recognition com 98.7 4.8E-07 1E-11 108.0 18.1 233 555-824 397-656 (767)
356 KOG0990 Replication factor C, 98.7 1E-07 2.3E-12 104.3 10.9 181 550-775 37-224 (360)
357 TIGR02031 BchD-ChlD magnesium 98.7 1.6E-07 3.5E-12 115.9 14.0 142 590-754 16-174 (589)
358 smart00350 MCM minichromosome 98.7 1.2E-07 2.5E-12 115.7 12.5 143 589-755 235-401 (509)
359 PF07726 AAA_3: ATPase family 98.7 5.9E-09 1.3E-13 101.0 0.8 109 880-1003 1-129 (131)
360 PRK08769 DNA polymerase III su 98.6 3.9E-07 8.5E-12 103.6 15.1 156 876-1052 24-207 (319)
361 PF00158 Sigma54_activat: Sigm 98.6 3.8E-07 8.3E-12 94.6 13.6 126 556-718 1-143 (168)
362 COG1220 HslU ATP-dependent pro 98.6 5.5E-07 1.2E-11 98.9 15.1 91 656-751 251-346 (444)
363 TIGR02031 BchD-ChlD magnesium 98.6 2.4E-07 5.3E-12 114.3 14.0 132 878-1025 16-174 (589)
364 TIGR02974 phageshock_pspF psp 98.6 3.7E-07 8.1E-12 105.0 14.5 168 878-1061 22-232 (329)
365 smart00350 MCM minichromosome 98.6 3.4E-07 7.4E-12 111.6 15.0 165 845-1027 204-402 (509)
366 PRK08058 DNA polymerase III su 98.6 3.2E-07 6.9E-12 105.8 13.5 132 589-752 27-180 (329)
367 KOG2227 Pre-initiation complex 98.6 5.8E-07 1.3E-11 102.9 14.9 202 555-790 151-377 (529)
368 PRK10820 DNA-binding transcrip 98.6 4E-07 8.6E-12 111.3 14.8 192 841-1060 201-435 (520)
369 COG1221 PspF Transcriptional r 98.6 1.4E-07 3.1E-12 108.7 10.2 195 841-1062 75-309 (403)
370 PRK06090 DNA polymerase III su 98.6 8.2E-07 1.8E-11 100.9 16.1 129 876-1023 23-178 (319)
371 PRK11608 pspF phage shock prot 98.6 3.3E-07 7.2E-12 105.5 13.0 192 843-1061 5-239 (326)
372 PF00158 Sigma54_activat: Sigm 98.6 1.2E-07 2.7E-12 98.2 8.6 111 879-1006 23-157 (168)
373 PRK07993 DNA polymerase III su 98.6 1.3E-06 2.8E-11 100.5 17.7 173 558-776 6-197 (334)
374 COG0470 HolB ATPase involved i 98.6 3.5E-07 7.5E-12 105.3 13.0 128 592-748 26-175 (325)
375 PRK06871 DNA polymerase III su 98.6 1.4E-06 3.1E-11 99.3 17.6 156 557-753 5-178 (325)
376 PF05621 TniB: Bacterial TniB 98.6 8.2E-07 1.8E-11 98.5 15.1 188 879-1089 62-285 (302)
377 TIGR00602 rad24 checkpoint pro 98.6 8E-07 1.7E-11 109.2 16.5 202 550-787 80-323 (637)
378 COG3604 FhlA Transcriptional r 98.6 2.3E-07 5E-12 107.1 11.0 193 841-1062 220-456 (550)
379 PF13177 DNA_pol3_delta2: DNA 98.6 4.1E-07 8.8E-12 94.0 11.8 122 589-741 18-161 (162)
380 PF12775 AAA_7: P-loop contain 98.6 1.1E-07 2.3E-12 106.4 8.0 146 590-756 33-195 (272)
381 PRK08116 hypothetical protein; 98.6 1.5E-07 3.3E-12 105.1 8.7 129 878-1022 114-257 (268)
382 KOG1942 DNA helicase, TBP-inte 98.5 1.9E-06 4E-11 92.8 15.9 63 844-914 38-102 (456)
383 PF07726 AAA_3: ATPase family 98.5 1.9E-08 4.2E-13 97.5 0.9 115 592-732 1-129 (131)
384 KOG0990 Replication factor C, 98.5 3.3E-07 7.2E-12 100.4 10.1 163 836-1030 33-208 (360)
385 KOG1514 Origin recognition com 98.5 1.6E-06 3.5E-11 103.6 16.3 202 880-1097 424-659 (767)
386 PRK08769 DNA polymerase III su 98.5 2.4E-06 5.3E-11 97.2 17.1 157 589-778 25-203 (319)
387 TIGR02915 PEP_resp_reg putativ 98.5 6.8E-07 1.5E-11 107.8 13.0 199 555-792 140-372 (445)
388 PRK06964 DNA polymerase III su 98.5 1.1E-06 2.3E-11 101.0 13.7 138 588-752 19-202 (342)
389 KOG2035 Replication factor C, 98.5 1.9E-06 4.2E-11 92.5 14.3 171 840-1044 9-219 (351)
390 PF01637 Arch_ATPase: Archaeal 98.5 5.2E-07 1.1E-11 98.1 10.5 185 557-781 2-231 (234)
391 PRK10923 glnG nitrogen regulat 98.5 2.2E-06 4.7E-11 104.2 16.0 201 553-792 137-371 (469)
392 KOG1942 DNA helicase, TBP-inte 98.5 3.2E-06 7E-11 91.0 15.0 104 655-786 296-412 (456)
393 KOG2680 DNA helicase TIP49, TB 98.5 2.4E-06 5.1E-11 92.4 13.9 131 655-824 288-430 (454)
394 COG2204 AtoC Response regulato 98.4 9.6E-07 2.1E-11 103.8 11.8 190 842-1060 139-372 (464)
395 PRK13765 ATP-dependent proteas 98.4 1.8E-06 3.9E-11 106.5 14.6 49 840-903 27-75 (637)
396 smart00763 AAA_PrkA PrkA AAA d 98.4 1.8E-06 3.9E-11 98.6 12.9 63 842-911 48-118 (361)
397 COG0606 Predicted ATPase with 98.4 2.3E-07 4.9E-12 107.4 5.5 47 841-902 176-222 (490)
398 PRK08699 DNA polymerase III su 98.4 1.1E-06 2.3E-11 100.9 10.9 131 876-1023 19-183 (325)
399 KOG2227 Pre-initiation complex 98.4 1.5E-05 3.2E-10 91.7 19.6 231 845-1095 151-417 (529)
400 PRK08699 DNA polymerase III su 98.4 2.9E-06 6.2E-11 97.3 14.2 134 588-752 19-183 (325)
401 KOG2680 DNA helicase TIP49, TB 98.4 1.4E-05 3E-10 86.6 18.1 64 844-915 40-105 (454)
402 PRK09862 putative ATP-dependen 98.4 2.2E-06 4.8E-11 102.9 13.7 143 842-1015 189-391 (506)
403 PRK05022 anaerobic nitric oxid 98.4 1.7E-06 3.7E-11 105.7 12.9 192 843-1062 186-420 (509)
404 smart00763 AAA_PrkA PrkA AAA d 98.4 6.2E-06 1.3E-10 94.3 16.3 53 555-616 52-104 (361)
405 PRK15429 formate hydrogenlyase 98.4 4E-06 8.7E-11 106.3 16.3 194 841-1061 373-608 (686)
406 PRK15115 response regulator Gl 98.4 5.9E-06 1.3E-10 99.6 17.0 222 879-1133 158-428 (444)
407 PRK06090 DNA polymerase III su 98.4 5.7E-06 1.2E-10 94.2 15.4 137 589-752 24-178 (319)
408 TIGR01818 ntrC nitrogen regula 98.3 3.4E-06 7.3E-11 102.3 13.6 200 555-793 135-368 (463)
409 PF13173 AAA_14: AAA domain 98.3 1.8E-06 3.9E-11 85.6 9.2 120 591-745 3-126 (128)
410 PRK11361 acetoacetate metaboli 98.3 7.2E-06 1.6E-10 99.2 16.1 198 555-792 144-376 (457)
411 TIGR00764 lon_rel lon-related 98.3 1E-05 2.3E-10 100.2 17.6 102 709-823 268-391 (608)
412 KOG1051 Chaperone HSP104 and r 98.3 1.2E-05 2.6E-10 100.8 17.8 137 554-718 562-710 (898)
413 PF14532 Sigma54_activ_2: Sigm 98.3 6.9E-07 1.5E-11 89.8 5.8 81 558-668 2-82 (138)
414 TIGR02915 PEP_resp_reg putativ 98.3 3.1E-06 6.8E-11 102.0 12.2 165 879-1060 163-370 (445)
415 PRK15115 response regulator Gl 98.3 8.9E-06 1.9E-10 98.1 16.0 196 556-791 136-366 (444)
416 PRK08116 hypothetical protein; 98.3 1.8E-06 3.9E-11 96.5 9.2 72 590-666 114-189 (268)
417 PF05729 NACHT: NACHT domain 98.3 4.5E-06 9.8E-11 85.7 11.5 145 592-755 2-164 (166)
418 COG1239 ChlI Mg-chelatase subu 98.3 4E-06 8.7E-11 96.0 11.9 158 841-1027 14-234 (423)
419 PRK08181 transposase; Validate 98.3 1E-06 2.2E-11 98.1 6.7 71 878-950 106-180 (269)
420 PRK06835 DNA replication prote 98.3 1.7E-06 3.6E-11 99.2 8.6 109 879-999 184-303 (329)
421 PRK12377 putative replication 98.3 1E-06 2.3E-11 96.8 6.2 69 879-949 102-175 (248)
422 TIGR02655 circ_KaiC circadian 98.2 5.7E-06 1.2E-10 100.5 12.4 77 874-950 259-366 (484)
423 PRK10923 glnG nitrogen regulat 98.2 2E-05 4.4E-10 95.7 17.0 168 878-1061 161-370 (469)
424 PF01078 Mg_chelatase: Magnesi 98.2 1E-06 2.2E-11 93.1 4.7 46 553-615 2-47 (206)
425 COG5245 DYN1 Dynein, heavy cha 98.2 7.5E-06 1.6E-10 102.9 12.6 396 587-1029 1491-1969(3164)
426 PRK06526 transposase; Provisio 98.2 1.8E-06 3.8E-11 95.7 6.3 71 878-950 98-172 (254)
427 PF14532 Sigma54_activ_2: Sigm 98.2 2.5E-06 5.4E-11 85.7 6.8 86 878-989 21-109 (138)
428 PRK06921 hypothetical protein; 98.2 2.5E-06 5.4E-11 95.3 7.2 68 878-948 117-188 (266)
429 PF01637 Arch_ATPase: Archaeal 98.2 4.8E-06 1E-10 90.5 9.3 162 878-1048 20-229 (234)
430 PRK11361 acetoacetate metaboli 98.2 2.2E-05 4.8E-10 95.0 15.8 165 879-1060 167-374 (457)
431 PF03152 UFD1: Ubiquitin fusio 98.2 2.2E-05 4.7E-10 81.1 13.2 150 13-170 25-175 (176)
432 PF01695 IstB_IS21: IstB-like 98.2 1.7E-06 3.6E-11 90.8 4.9 100 878-990 47-150 (178)
433 PF03215 Rad17: Rad17 cell cyc 98.2 4.8E-05 1E-09 92.2 18.0 201 553-793 18-269 (519)
434 COG1484 DnaC DNA replication p 98.2 3.4E-06 7.5E-11 93.4 7.4 100 877-992 104-211 (254)
435 PRK07952 DNA replication prote 98.2 2.4E-06 5.3E-11 93.7 6.0 69 879-949 100-174 (244)
436 PTZ00111 DNA replication licen 98.1 5.5E-06 1.2E-10 103.8 9.7 164 845-1025 451-657 (915)
437 TIGR01818 ntrC nitrogen regula 98.1 2.3E-05 5E-10 95.0 15.0 168 879-1062 158-367 (463)
438 PRK09183 transposase/IS protei 98.1 3.5E-06 7.6E-11 93.8 7.2 72 878-950 102-177 (259)
439 PRK08939 primosomal protein Dn 98.1 3.6E-06 7.7E-11 95.7 7.2 70 878-949 156-229 (306)
440 PRK09302 circadian clock prote 98.1 1.9E-05 4.1E-10 96.8 14.2 78 874-951 269-377 (509)
441 PF13173 AAA_14: AAA domain 98.1 7.4E-06 1.6E-10 81.2 8.2 69 879-949 3-73 (128)
442 TIGR00368 Mg chelatase-related 98.1 7.8E-06 1.7E-10 98.7 9.9 26 590-615 211-236 (499)
443 COG1239 ChlI Mg-chelatase subu 98.1 3.2E-05 7E-10 88.8 13.7 84 656-756 145-234 (423)
444 PF14516 AAA_35: AAA-like doma 98.1 0.00025 5.4E-09 82.0 21.1 179 590-793 31-244 (331)
445 PRK05917 DNA polymerase III su 98.1 2E-05 4.2E-10 88.2 10.9 118 876-1012 17-154 (290)
446 PF03215 Rad17: Rad17 cell cyc 98.1 3.6E-05 7.9E-10 93.2 14.0 171 879-1063 46-269 (519)
447 PF13401 AAA_22: AAA domain; P 98.1 1.3E-05 2.9E-10 79.2 8.6 98 878-987 4-125 (131)
448 PRK07132 DNA polymerase III su 98.0 0.00011 2.3E-09 83.3 16.6 125 878-1023 18-160 (299)
449 PRK05917 DNA polymerase III su 98.0 4.6E-05 9.9E-10 85.3 13.3 126 589-741 18-154 (290)
450 PF13401 AAA_22: AAA domain; P 98.0 2.6E-05 5.7E-10 77.0 10.2 79 590-668 4-100 (131)
451 PRK12377 putative replication 98.0 2.3E-05 5E-10 86.3 10.5 72 591-667 102-175 (248)
452 PRK10365 transcriptional regul 98.0 3.4E-05 7.3E-10 93.0 12.9 196 556-791 141-371 (441)
453 PRK10365 transcriptional regul 98.0 1.1E-05 2.3E-10 97.3 8.4 99 878-990 162-284 (441)
454 PRK08181 transposase; Validate 98.0 1.9E-05 4.1E-10 88.0 9.7 74 590-668 106-180 (269)
455 PRK07276 DNA polymerase III su 98.0 9.5E-05 2.1E-09 83.0 14.9 128 876-1022 22-172 (290)
456 PRK09862 putative ATP-dependen 98.0 4.6E-05 9.9E-10 91.7 13.0 132 589-744 209-391 (506)
457 PRK06526 transposase; Provisio 98.0 9.3E-06 2E-10 90.0 6.7 74 590-668 98-172 (254)
458 PRK05818 DNA polymerase III su 98.0 4.2E-05 9E-10 83.8 11.2 121 876-1012 5-147 (261)
459 PF00931 NB-ARC: NB-ARC domain 98.0 9.5E-05 2.1E-09 83.6 14.8 160 590-784 19-202 (287)
460 PF12774 AAA_6: Hydrolytic ATP 98.0 0.00013 2.8E-09 79.7 15.0 133 591-750 33-176 (231)
461 PRK07952 DNA replication prote 98.0 4.2E-05 9.2E-10 84.0 11.3 72 591-667 100-174 (244)
462 PTZ00111 DNA replication licen 98.0 1.4E-05 3.1E-10 100.3 8.2 147 588-755 490-658 (915)
463 KOG1970 Checkpoint RAD17-RFC c 97.9 0.00016 3.6E-09 84.7 14.9 175 880-1063 112-321 (634)
464 PF12775 AAA_7: P-loop contain 97.9 1.9E-05 4.1E-10 88.5 7.2 138 878-1027 33-195 (272)
465 PRK06835 DNA replication prote 97.9 5.2E-05 1.1E-09 87.0 10.4 72 591-667 184-258 (329)
466 COG3283 TyrR Transcriptional r 97.9 8E-05 1.7E-09 82.8 11.2 209 551-792 201-432 (511)
467 PRK09183 transposase/IS protei 97.9 3.5E-05 7.7E-10 85.8 8.6 76 588-667 100-176 (259)
468 PRK06921 hypothetical protein; 97.9 6.3E-05 1.4E-09 84.1 10.3 72 590-666 117-188 (266)
469 KOG3595 Dyneins, heavy chain [ 97.8 0.00017 3.7E-09 97.5 16.0 333 591-945 128-531 (1395)
470 PRK13406 bchD magnesium chelat 97.8 8.4E-05 1.8E-09 91.3 11.9 122 879-1016 26-173 (584)
471 PF01695 IstB_IS21: IstB-like 97.8 3.5E-05 7.6E-10 80.9 7.1 73 589-666 46-119 (178)
472 PRK13406 bchD magnesium chelat 97.8 0.00013 2.8E-09 89.7 13.0 200 591-824 26-251 (584)
473 TIGR02237 recomb_radB DNA repa 97.8 0.0001 2.2E-09 79.5 10.8 81 586-669 8-111 (209)
474 COG3267 ExeA Type II secretory 97.8 0.00068 1.5E-08 73.2 16.1 176 592-794 53-255 (269)
475 cd01120 RecA-like_NTPases RecA 97.8 6.3E-05 1.4E-09 76.7 8.2 72 881-952 2-100 (165)
476 KOG2170 ATPase of the AAA+ sup 97.8 0.00033 7.1E-09 76.9 13.8 195 556-775 84-321 (344)
477 PRK06851 hypothetical protein; 97.8 0.0003 6.6E-09 81.3 14.4 34 879-912 215-251 (367)
478 PF12774 AAA_6: Hydrolytic ATP 97.7 0.00018 3.9E-09 78.5 11.5 63 879-949 33-96 (231)
479 PF00910 RNA_helicase: RNA hel 97.7 7.2E-05 1.6E-09 71.7 6.9 23 881-903 1-23 (107)
480 cd01120 RecA-like_NTPases RecA 97.7 0.00015 3.3E-09 73.9 9.8 74 593-669 2-99 (165)
481 PRK08939 primosomal protein Dn 97.7 0.0001 2.2E-09 84.0 9.1 74 589-667 155-229 (306)
482 KOG1970 Checkpoint RAD17-RFC c 97.7 0.0016 3.6E-08 76.6 18.8 51 555-615 83-135 (634)
483 PRK07132 DNA polymerase III su 97.7 0.0012 2.7E-08 74.8 17.3 147 591-775 19-177 (299)
484 PF05729 NACHT: NACHT domain 97.7 0.00029 6.4E-09 72.2 11.4 142 880-1027 2-165 (166)
485 COG1123 ATPase components of v 97.7 0.0014 3E-08 78.6 17.9 31 587-617 32-62 (539)
486 COG1484 DnaC DNA replication p 97.6 0.00015 3.2E-09 80.5 9.1 75 589-667 104-179 (254)
487 COG3283 TyrR Transcriptional r 97.6 0.0004 8.7E-09 77.4 12.1 98 879-990 228-344 (511)
488 COG1241 MCM2 Predicted ATPase 97.6 0.00014 3.1E-09 89.4 9.3 141 591-755 320-484 (682)
489 KOG2228 Origin recognition com 97.6 0.00037 8E-09 77.4 11.2 141 591-754 50-219 (408)
490 PHA00729 NTP-binding motif con 97.6 0.00014 3E-09 78.4 7.1 25 880-904 19-43 (226)
491 PF03969 AFG1_ATPase: AFG1-lik 97.6 4.1E-05 9E-10 88.9 3.3 140 875-1039 59-207 (362)
492 KOG0478 DNA replication licens 97.6 0.00028 6.1E-09 84.5 9.9 171 555-753 430-625 (804)
493 TIGR02237 recomb_radB DNA repa 97.6 0.00018 3.9E-09 77.5 7.9 116 873-988 7-148 (209)
494 COG0606 Predicted ATPase with 97.6 2.5E-05 5.5E-10 90.8 1.3 48 550-614 175-222 (490)
495 TIGR02688 conserved hypothetic 97.5 0.0006 1.3E-08 79.3 12.4 236 809-1091 156-431 (449)
496 PLN03210 Resistant to P. syrin 97.5 0.00071 1.5E-08 91.0 14.5 177 553-777 183-389 (1153)
497 PRK07276 DNA polymerase III su 97.5 0.0012 2.7E-08 74.2 13.9 133 588-751 22-172 (290)
498 PRK05818 DNA polymerase III su 97.5 0.00077 1.7E-08 74.0 11.7 125 589-741 6-147 (261)
499 COG3284 AcoR Transcriptional a 97.5 0.00015 3.3E-09 87.0 6.7 165 878-1059 336-537 (606)
500 KOG2170 ATPase of the AAA+ sup 97.5 0.0019 4.2E-08 71.0 14.2 97 846-951 84-192 (344)
No 1
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-129 Score=1113.64 Aligned_cols=935 Identities=38% Similarity=0.569 Sum_probs=707.9
Q ss_pred CeeEEEEeCCcccceeeCCHHHHHHHhcccccCCCCceEEEEEEeCCCC--eEEEEecCccCCCCceEecHHHHhhcCCC
Q 001162 1 MELEVRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQ--RWVVAWSGATSSSSFIEVARQFAECISLA 78 (1134)
Q Consensus 1 m~~~v~~~~~~~~~~v~lp~~l~~~l~~~~~~~~~~q~~~~e~~~~~~~--~~~~~w~g~~s~~~~iei~~~~a~~~gl~ 78 (1134)
|++.|++.+ +|+||||||..++..+... .|+.+|+..|.+.. .+++-|.|..++.+.||||+++|+.|||.
T Consensus 3 ~a~vV~~~~-~r~cfv~lP~ql~~ai~~~------~~~~av~~v~~~~~~~~s~~~g~~s~~se~~ieIn~~~A~~l~L~ 75 (952)
T KOG0735|consen 3 MACVVNYKS-LRSCFVNLPEQLLEAISEP------VQNYAVQAVVSKNPIKKSWVFGHGSGSSENVIEINRVYAHTLGLA 75 (952)
T ss_pred ceEEEEeee-chhhhhccHHHHHHHHhcc------ccCceeEEEEcCCChhheeecccCCCCccceEEeehhhHhhccCC
Confidence 778899998 9999999999999999964 35688888887643 33444455566678999999999999999
Q ss_pred CCCEEEEEEeeCCccceEEEEecCCcchHHHHHhcHHHHHHHHhcccceecCCCEEEEEecCceEEEEEEcccCCCCCeE
Q 001162 79 DHTIVQVRVVSNVLKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVV 158 (1134)
Q Consensus 79 ~~~~v~~~~~~~~~~~~~v~veP~t~dDwei~e~~a~~~e~~ll~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~ 158 (1134)
+|+.|.++++.+++.|++|+|||+|+|||||||+||+.+|.+||+|+|||++ ++||+|++.+|+|+|+|+++.|+..||
T Consensus 76 e~~~V~l~~~~~v~~~~~V~VeP~TsdDWEIiElnA~~~e~~lL~Q~RIv~~-~~f~iwl~~~t~i~fqv~rl~Ps~~~g 154 (952)
T KOG0735|consen 76 ENQEVKLSIIDHVHEATQVEVEPVTSDDWEIIELNAEWLEENLLVQTRIVTP-EIFIIWLPSGTVIQFQVDRLIPSMLYG 154 (952)
T ss_pred CCCeEEEEEcCCccceeEEEEeeccCccHHHHHhhHHHHhhhhhhheeeccc-ceeEEEEcCccEEEEEEeeeeccccee
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred EccCCCEEEEeccCCCCCccccccchhhccccchhhhhhheeeccCCCCccccccccCcccccccceeEEeCCccccccc
Q 001162 159 QLVPGTEVAVAPKRRKNNVKKHEDSYMQAFNESTSIAKALLRVQDSDEGLSHKCNVKGVELGVALTSVAFINPETAENVS 238 (1134)
Q Consensus 159 ~l~~~tev~vapk~r~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1134)
||.++|||+||||+|+...+.+++.....+... +..+|.- .....++|..+....+++||+ +++...
T Consensus 155 Rl~~~Tev~VaPK~~k~~l~~~~~g~~e~n~lk----s~~lr~~------~lrs~v~~~~~p~~n~s~vyi--~~aql~- 221 (952)
T KOG0735|consen 155 RLLRGTEVLVAPKPNKSALNVKENGVIEENTLK----SRSLRKV------QLRSVVEGRLLPDSNSSTVYI--NTAQLV- 221 (952)
T ss_pred eecCCceEEEecCcccchhhhhcccchhhhhhh----hhhhhhh------hhhhheecccccCcccceeee--ccccce-
Confidence 999999999999999988644332222111111 1112111 234457788888888889998 333211
Q ss_pred ccCceEEEeecCCCcCCCCCCCCCccccCccccccccCCCCCcccccceeEEEEEeeCccccCceeecHHHHHHHhcccc
Q 001162 239 LCSLELVAILPRLSSKENNPENNAPRIKSNLTSKEISGGASTDKKECRQAVVHLLFSDSVAKGHVKIARALRLYLNAGLH 318 (1134)
Q Consensus 239 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 318 (1134)
..+....+++...++.+ ++.+ ..+.+ .....+.+-..++|...+|..|.+++.++|.++.+...
T Consensus 222 --t~q~~~~~~k~~Lr~ss--------r~d~---~~~~~---g~~~Skvv~~~~~c~~q~P~~H~ai~~~l~~~~~tpe~ 285 (952)
T KOG0735|consen 222 --TAQGPALSVKLPLRQSS--------RSDE---VYNDG---GNLKSKVVEQDVVCPKQIPEFHFAISKSLWLSYSTPED 285 (952)
T ss_pred --eccCceeeeeccccCCc--------cchh---Hhhcc---CcchhhhhcccccCCCCCCcceeeEehhHHHhhcCCcc
Confidence 12222233333322210 0000 00100 01112233334677788999999999999999974200
Q ss_pred ceEEEeeecccccCCCCceecccceeeeccccccccccccccccccccccccccccCCccccCCCCcchhhHHhhhcCCC
Q 001162 319 SWVYLKKCTVNLKKEIPMVSLSPCHFKMLEKDKAFGIGLELDNKNHKTKKMLEKTSSGIYMDDGDLSAEDDIIAALSSEP 398 (1134)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (1134)
. +| .+.++ ..|.-++.+..+++-..
T Consensus 286 ----------------------d--ik-------~~l~~------------------------~iw~~~n~i~~~~~i~~ 310 (952)
T KOG0735|consen 286 ----------------------D--IK-------TGLKF------------------------VIWNLNNPISSSKFIEE 310 (952)
T ss_pred ----------------------c--hh-------cCcee------------------------eeeccccchhhhhhhHH
Confidence 0 11 11111 11211111111100000
Q ss_pred CCchhhHHHHhhhcchhhHHHHHHHHHHHhhhhccccccccccccccCCceEEEEEeccccCcCCCCCCCcCccchhhhh
Q 001162 399 SSKEDEEAVYQFENKKGLECLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHFEVKGYKSGTYGKVPASCNGALENKTK 478 (1134)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (1134)
..... ..-++++++. +-+.+. +..+++++.+ .+.+|++....++.....+..++..+.+...
T Consensus 311 l~~vg----~p~~tkk~l~----~eL~A~--------~~~ts~li~~--t~k~~~ie~~es~~~l~nq~eV~~~w~q~~v 372 (952)
T KOG0735|consen 311 LKRVG----LPDETKKNLS----SELVAA--------KLKTSYLIDG--TLKLFEIEVLESVSSLSNQEEVVRLWDQLKV 372 (952)
T ss_pred HHhcc----CCcccccchh----Hhhhhh--------hhccccccCC--ceEEEEeeccccccccccchHHhhHHHhhcc
Confidence 00000 0001122222 112221 2333555555 6688888763222222211222222222211
Q ss_pred hhccchhhhhhcccccccccCCCCchhhhhHhhhccCCCChhHHHHhhcccCCCCccceeeecccCcccccccccccccc
Q 001162 479 ARELRTEIFCVLTFSEESLHGGKNNAYELTLEARGQQNNNTEAVRQLFGKLNSGDSVSFYTVKERGSTQGFDSNVSSLSW 558 (1134)
Q Consensus 479 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 558 (1134)
-+..+.|..+...+..+.+.|.|...+.+. ..... .+..-
T Consensus 373 t~~~~~ei~~~~~v~~~~~~g~K~~~~~l~---------------------------------~~~~e-------~d~i~ 412 (952)
T KOG0735|consen 373 TKMPPLEIKITSDVNLPVLAGIKENSPDLV---------------------------------MSPFE-------HDFIQ 412 (952)
T ss_pred ccCCchheeeeeeecchhhhcchhcCcccc---------------------------------cCcCC-------Cceee
Confidence 111122222222222111111111000000 00000 11111
Q ss_pred chhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchh
Q 001162 559 MGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGP 638 (1134)
Q Consensus 559 ~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~ 638 (1134)
....+++..+ ..++| +..+++|||+||+|||||.|++++++++. ....+|+.+++|+.+.+....
T Consensus 413 ~~s~kke~~n---~~~sp----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 413 VPSYKKENAN---QELSP----------VFRHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred cchhhhhhhh---hhccc----------ccccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHH
Confidence 1112222221 12222 34467899999999999999999999986 344599999999999999999
Q ss_pred hHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCC
Q 001162 639 IIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS 718 (1134)
Q Consensus 639 ~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~ 718 (1134)
.+.+.++.+|.+|.|++|+|++|||+|.|++ .++.++.+.....+.+..++.+..+.+...+. .+.+||+.+.
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~-~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~------~ia~Iat~qe 550 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLAS-ASSNENGQDGVVSERLAAFLNQVIKIYLKRNR------KIAVIATGQE 550 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhc-cCcccCCcchHHHHHHHHHHHHHHHHHHccCc------EEEEEEechh
Confidence 9999999999999999999999999999997 34556666667777888888888887765543 4899999999
Q ss_pred CCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhccccc
Q 001162 719 LEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLH 798 (1134)
Q Consensus 719 ~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~ 798 (1134)
...+++.|.++++|+.++.+++|+..+|.+||+..+++....+..+++..++..|+||.+.||..+++||+|.++....+
T Consensus 551 ~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris 630 (952)
T KOG0735|consen 551 LQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS 630 (952)
T ss_pred hhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998877777788888999999999999999999999999843221
Q ss_pred CCCccccccccccchhhhHhhhhccccceeccccccccCCCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCC
Q 001162 799 SDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLR 878 (1134)
Q Consensus 799 ~~~~~~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~~~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~ 878 (1134)
+ ....++.++|.+++++|.|..+|++....+. ..+|+||||+.++|+.+.+.++||.+|+.+|.+++++.+
T Consensus 631 ------~-~~klltke~f~ksL~~F~P~aLR~ik~~k~t--gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~ 701 (952)
T KOG0735|consen 631 ------N-GPKLLTKELFEKSLKDFVPLALRGIKLVKST--GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLR 701 (952)
T ss_pred ------c-CcccchHHHHHHHHHhcChHHhhhccccccC--CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccc
Confidence 1 2237999999999999999999999998876 489999999999999999999999999999999999999
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCC
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNT 958 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~ 958 (1134)
.|+|||||||||||+||.++|..++++||.++++++++||+|.+|+++|++|.+|+..+||||||||+|+++|+||++++
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsT 781 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDST 781 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHH
Q 001162 959 GVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEA 1038 (1134)
Q Consensus 959 ~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~ 1038 (1134)
|+++|++||||++|||.+..++|+|+|||+|||+|||||+||||||+.++||.|++.+|++|++.+...+.++.++|++.
T Consensus 782 GVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~ 861 (952)
T KOG0735|consen 782 GVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLEC 861 (952)
T ss_pred CchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHh--hcCCCCcHHHHHHHHHHHHHhhccc
Q 001162 1039 IAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIAS--KARPSVSEAEKLRLYSIYGQFLDSK 1116 (1134)
Q Consensus 1039 La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~--~~~ps~~~~~~~~~~~~~~~f~~~r 1116 (1134)
+|..|+|||||||++++++|.+.|+++.+.+.+ +.+..|.++..-+..... ..+|+.+.-+-+.....|.+|.+++
T Consensus 862 ~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~~--~~~~~p~~~~~~~~si~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 939 (952)
T KOG0735|consen 862 LAQKTDGFTGADLQSLLYNAQLAAVHEILKRED--EEGVVPSIDDASLESIFSDSKRKPSRSALDNRKGQDVYSQFLSDE 939 (952)
T ss_pred HhhhcCCCchhhHHHHHHHHHHHHHHHHHHhcC--ccccCCccchhhhhhhhhccCCCccccccchhhhhhHHHhhcCcc
Confidence 999999999999999999999999999998655 333445566666665554 7889999888889999999999988
Q ss_pred ch
Q 001162 1117 KS 1118 (1134)
Q Consensus 1117 ~~ 1118 (1134)
..
T Consensus 940 ~s 941 (952)
T KOG0735|consen 940 KS 941 (952)
T ss_pred eE
Confidence 43
No 2
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-94 Score=817.15 Aligned_cols=543 Identities=36% Similarity=0.579 Sum_probs=485.9
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
..+|.++||++..+.++.+.+..+. +++.|..+|+.||+|+|||||||||||+||+++|++++ .+++.|++
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~---~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~------vPf~~isA 256 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIK---HPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG------VPFLSISA 256 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhc---CchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC------CceEeecc
Confidence 4478999999999999998876644 57789999999999999999999999999999999998 89999999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
-++.+...|+.++.++++|++|....|||+||||||.+.+++.. .+ .+-.+++..+|+..||++..... ...+
T Consensus 257 peivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~---aq-reMErRiVaQLlt~mD~l~~~~~---~g~~ 329 (802)
T KOG0733|consen 257 PEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE---AQ-REMERRIVAQLLTSMDELSNEKT---KGDP 329 (802)
T ss_pred hhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh---HH-HHHHHHHHHHHHHhhhccccccc---CCCC
Confidence 99999999999999999999999999999999999999976544 22 23345888899999999875421 1236
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
|+|||+||+|+.+||+|+|+|||++.|.+..|+..+|.+||+.++++..+.- +-++..||..|.||.|+||..||.+|.
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~AL~~~Aa 408 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMALCREAA 408 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988654442 445889999999999999999999999
Q ss_pred HHHhcccccCCCc---------------cc------------------------------------cccccccchhhhHh
Q 001162 790 HAAVGRYLHSDSS---------------FE------------------------------------KHIKPTLVRDDFSQ 818 (1134)
Q Consensus 790 ~~a~~r~~~~~~~---------------~~------------------------------------~~~~~~lt~eDf~~ 818 (1134)
..|+.|.++..+. .+ ......+..+||..
T Consensus 409 ~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~ 488 (802)
T KOG0733|consen 409 FVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEE 488 (802)
T ss_pred HHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHH
Confidence 9999887642110 00 00112366789999
Q ss_pred hhhccccceeccccccccCCCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHH
Q 001162 819 AMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAA 898 (1134)
Q Consensus 819 Al~~~~P~~lr~v~~~~~~~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~al 898 (1134)
|+..+.|++.|+.+...|+ +.|+||||+++++.+|..++.+|+++++.|+..|+..+.|+|||||||||||+||+|+
T Consensus 489 Al~~iQPSakREGF~tVPd---VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAV 565 (802)
T KOG0733|consen 489 ALSKIQPSAKREGFATVPD---VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAV 565 (802)
T ss_pred HHHhcCcchhcccceecCC---CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHH
Confidence 9999999999998888775 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccccc
Q 001162 899 AAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVL 978 (1134)
Q Consensus 899 A~~~~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~ 978 (1134)
|++.|+||+.|++++|+++|+|++|+.+|.+|.+|+..+||||||||+|+|.|+|+........|++||||++|||++..
T Consensus 566 ANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R 645 (802)
T KOG0733|consen 566 ANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEER 645 (802)
T ss_pred hhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHc--cCCCCCcccHHHHHHhcc--CCcHHHHHHH
Q 001162 979 TGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISR--KLPLADDVDLEAIAHMTE--GFSGADLQAL 1054 (1134)
Q Consensus 979 ~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~--~~~~~~~vd~~~La~~t~--g~sg~dl~~l 1054 (1134)
.+|+|||||||||.||||++||||||+.+|+++|+.++|.+||+.+.+ +.++..|+|+++||+.+. ||||+||.+|
T Consensus 646 ~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaL 725 (802)
T KOG0733|consen 646 RGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAAL 725 (802)
T ss_pred cceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHH
Confidence 999999999999999999999999999999999999999999999999 788999999999999877 9999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCC-----cccccHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh
Q 001162 1055 LSDAQLSAVHEILNNIDSNEPGK-----MPVITDALLKSIASKARPSVSEAEKLRLYSIYGQF 1112 (1134)
Q Consensus 1055 ~~~A~~~a~~~~~~~~~~~~~~~-----~~~it~e~l~~al~~~~ps~~~~~~~~~~~~~~~f 1112 (1134)
|++|...|+++.+...+.....- ...+|..||.+|++.++||+++.++.+|++.-..+
T Consensus 726 vreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~ 788 (802)
T KOG0733|consen 726 VREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSR 788 (802)
T ss_pred HHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhh
Confidence 99999999999886554332211 22578899999999999999999998777765544
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-85 Score=757.59 Aligned_cols=506 Identities=35% Similarity=0.596 Sum_probs=467.8
Q ss_pred cccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccc
Q 001162 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (1134)
Q Consensus 554 ~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~ 633 (1134)
..++|...++..+.+.+...+. .+..+..+|.++|+++|+|||||||||.+++++|++.+ +++.++++..+.
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~--~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~------a~~~~i~~peli 255 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLR--HPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG------AFLFLINGPELI 255 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhc--chhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC------ceeEecccHHHH
Confidence 4677888888888776655433 56788999999999999999999999999999999987 899999999999
Q ss_pred ccchhhHHHHHHHHHHHHhhcC-CeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEE
Q 001162 634 LEKGPIIRQALSNFISEALDHA-PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAF 712 (1134)
Q Consensus 634 ~~~~~~~~~~l~~~f~~a~~~~-PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~v 712 (1134)
....++.++.++..|++|..++ |+++||||+|.+++++....+ ...++..+++.+||..... +.+++
T Consensus 256 ~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-----~e~Rv~sqlltL~dg~~~~-------~~viv 323 (693)
T KOG0730|consen 256 SKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-----VESRVVSQLLTLLDGLKPD-------AKVIV 323 (693)
T ss_pred HhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-----HHHHHHHHHHHHHhhCcCc-------CcEEE
Confidence 9999999999999999999999 999999999999976544332 3457888999999987633 25999
Q ss_pred EEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 001162 713 VASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1134)
Q Consensus 713 Iattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a 792 (1134)
++++|+++.||++++| |||++.+.+..|+..+|.+|++.+.+..+.. ++..+..+|..|+||.|+||..+|..|...+
T Consensus 324 l~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~ 401 (693)
T KOG0730|consen 324 LAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQA 401 (693)
T ss_pred EEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999999999999999999999877665 6678999999999999999999999998777
Q ss_pred hcccccCCCccccccccccchhhhHhhhhccccceeccccccccCCCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhh
Q 001162 793 VGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQ 872 (1134)
Q Consensus 793 ~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~~~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~ 872 (1134)
..+ ++++|..|+.+..|+++|.+....+ ++.|+||||++++|+.|++.++||++|++.|.+
T Consensus 402 ~r~----------------~~~~~~~A~~~i~psa~Re~~ve~p---~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r 462 (693)
T KOG0730|consen 402 TRR----------------TLEIFQEALMGIRPSALREILVEMP---NVSWDDIGGLEELKRELQQAVEWPLKHPEKFAR 462 (693)
T ss_pred hhh----------------hHHHHHHHHhcCCchhhhheeccCC---CCChhhccCHHHHHHHHHHHHhhhhhchHHHHH
Confidence 644 6789999999999999998885554 599999999999999999999999999999999
Q ss_pred CCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCC
Q 001162 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1134)
Q Consensus 873 ~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~ 952 (1134)
.|+.+++|+|||||||||||++|+++|++++++|+.|++++++++|+|++|+.++++|++|+..+||||||||||+++..
T Consensus 463 ~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~ 542 (693)
T KOG0730|consen 463 FGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGS 542 (693)
T ss_pred hcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCC
Q 001162 953 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLAD 1032 (1134)
Q Consensus 953 r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~ 1032 (1134)
|++...++.+|++++||++|||++...+|+||||||||+.||+|++||||||+.||+|+|+.+.|.+||+.+++++++..
T Consensus 543 R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~ 622 (693)
T KOG0730|consen 543 RGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSE 622 (693)
T ss_pred cCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCc
Confidence 98777799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 001162 1033 DVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIY 1109 (1134)
Q Consensus 1033 ~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~~ps~~~~~~~~~~~~~ 1109 (1134)
++|++.||..|+||||+||.++|++|++.|+++.+. .+.|+.+||.+|++..+++++.++++.|++..
T Consensus 623 ~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~---------a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa 690 (693)
T KOG0730|consen 623 DVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE---------ATEITWQHFEEALKAVRPSLTSELLEKYEDFA 690 (693)
T ss_pred cccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc---------cccccHHHHHHHHHhhcccCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999875 35799999999999999999999998666543
No 4
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-74 Score=665.31 Aligned_cols=502 Identities=39% Similarity=0.624 Sum_probs=428.2
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhc
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSII 668 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~ 668 (1134)
....+||+|+||||||++++++|++++ .|+..++|.++.....+..+..+..+|..|+...|+||||-++|.+.
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas~lg------~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~ 503 (953)
T KOG0736|consen 430 LNPSVLLHGPPGSGKTTVVRAVASELG------LHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLG 503 (953)
T ss_pred cceEEEEeCCCCCChHHHHHHHHHHhC------CceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceee
Confidence 334599999999999999999999999 99999999999998888889999999999999999999999999987
Q ss_pred cCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHH
Q 001162 669 SSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKA 748 (1134)
Q Consensus 669 ~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~ 748 (1134)
. +.++. ...++...+...+.. .......+++++|+++++.+.+++.+++ .|...|.++.|+++||.+
T Consensus 504 i---d~dgg----ed~rl~~~i~~~ls~----e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~ 570 (953)
T KOG0736|consen 504 I---DQDGG----EDARLLKVIRHLLSN----EDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLE 570 (953)
T ss_pred e---cCCCc----hhHHHHHHHHHHHhc----ccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHH
Confidence 3 22221 122445555444431 0011223469999999999999999999 777899999999999999
Q ss_pred HHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcccccCC---------CccccccccccchhhhHhh
Q 001162 749 ILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSD---------SSFEKHIKPTLVRDDFSQA 819 (1134)
Q Consensus 749 IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~---------~~~~~~~~~~lt~eDf~~A 819 (1134)
||+.+.....+. .+..+..++.+|.||+.+|+..++.++-..+..+..... +.........++++||.++
T Consensus 571 iLq~y~~~~~~n-~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~ka 649 (953)
T KOG0736|consen 571 ILQWYLNHLPLN-QDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKA 649 (953)
T ss_pred HHHHHHhccccc-hHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHH
Confidence 999998765432 344578899999999999999998887444433322111 1111222366899999999
Q ss_pred hhccccceeccccccccCCCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHH
Q 001162 820 MHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAA 899 (1134)
Q Consensus 820 l~~~~P~~lr~v~~~~~~~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA 899 (1134)
+.+..... ......|+.+++.|+||||++++|..+.+.+.+|++|+++|.. |++++.|+|||||||||||.+|+|+|
T Consensus 650 ls~~~~~f--s~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVA 726 (953)
T KOG0736|consen 650 LSRLQKEF--SDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVA 726 (953)
T ss_pred HHHHHHhh--hhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHH
Confidence 98654432 2234567788999999999999999999999999999999985 67889999999999999999999999
Q ss_pred HHcCCcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCC--CCCcchhhHHHhHhhhccccc-
Q 001162 900 AACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH--DNTGVTDRVVNQFLTELDGVE- 976 (1134)
Q Consensus 900 ~~~~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~--~~~~~~~rv~~~lL~~ld~~~- 976 (1134)
.+|..+|++|+++||+++|+|++|+++|++|++||.++||||||||+|+++|+||. |+.++.||++.|||.+|||+.
T Consensus 727 TEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~ 806 (953)
T KOG0736|consen 727 TECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSD 806 (953)
T ss_pred hhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccC
Confidence 99999999999999999999999999999999999999999999999999999975 678999999999999999998
Q ss_pred -ccccEEEEEecCCCCccchhhcCcCcccceeecCCCC-HHHHHHHHHHHHccCCCCCcccHHHHHHhc-cCCcHHHHHH
Q 001162 977 -VLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPS-PRERLDILKVISRKLPLADDVDLEAIAHMT-EGFSGADLQA 1053 (1134)
Q Consensus 977 -~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~-~~er~~Il~~~~~~~~~~~~vd~~~La~~t-~g~sg~dl~~ 1053 (1134)
..+.|+|||||||||.|||||+||||||+.+|+++++ .+.+..+|+.+.+++.++.++|+.++|+.+ ..|||||+.+
T Consensus 807 ~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYs 886 (953)
T KOG0736|consen 807 SSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYS 886 (953)
T ss_pred CCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHH
Confidence 4678999999999999999999999999999999885 677999999999999999999999999876 4799999999
Q ss_pred HHHHHHHHHHHHHHhccCCC------CCCCcccccHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhh
Q 001162 1054 LLSDAQLSAVHEILNNIDSN------EPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFL 1113 (1134)
Q Consensus 1054 l~~~A~~~a~~~~~~~~~~~------~~~~~~~it~e~l~~al~~~~ps~~~~~~~~~~~~~~~f~ 1113 (1134)
+|.+|++.|+.|.....+.. .......++++||.+++++.+||++..|+.+|+.+..+|.
T Consensus 887 LCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 887 LCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 99999999999988766543 3345568999999999999999999999999999999984
No 5
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.7e-69 Score=681.00 Aligned_cols=541 Identities=34% Similarity=0.568 Sum_probs=471.7
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
..++++++|++..++.+.+.+...+ ..++++..+++.++.++|||||||||||++++++|++++ .+++.+++
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~--~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~------~~~i~i~~ 245 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPM--KHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG------AYFISING 245 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHh--hCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC------CeEEEEec
Confidence 3567889999999999988876544 357889999999999999999999999999999999987 67889999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
..+...+.+...+.++.+|+.+....|+||||||+|.+++.+....+ .....+...|..+++.+... +.
T Consensus 246 ~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~----~~~~~~~~~Ll~~ld~l~~~-------~~ 314 (733)
T TIGR01243 246 PEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTG----EVEKRVVAQLLTLMDGLKGR-------GR 314 (733)
T ss_pred HHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcc----hHHHHHHHHHHHHhhccccC-------CC
Confidence 98888888888889999999999999999999999999865433221 22246677788888876532 25
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
+++|++||.++.+|+++++++||+..+.++.|+.++|.+|++.+.....+ ..+..+..++..++||+++|+..+++.|.
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~d~~l~~la~~t~G~~gadl~~l~~~a~ 393 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AEDVDLDKLAEVTHGFVGADLAALAKEAA 393 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-ccccCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999977654332 13445889999999999999999999999
Q ss_pred HHHhcccccCCCc------c--ccccccccchhhhHhhhhccccceeccccccccCCCCCCCCCCCChhHHHHHHHHHHh
Q 001162 790 HAAVGRYLHSDSS------F--EKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIE 861 (1134)
Q Consensus 790 ~~a~~r~~~~~~~------~--~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~~~~~~~~~~i~gl~~~k~~l~~~i~ 861 (1134)
..++.+....+.. . .......++.+||..|+....|+.++......+ ...|++++|++.+|+.|.+.+.
T Consensus 394 ~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~---~~~~~di~g~~~~k~~l~~~v~ 470 (733)
T TIGR01243 394 MAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVP---NVRWSDIGGLEEVKQELREAVE 470 (733)
T ss_pred HHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhcccc---ccchhhcccHHHHHHHHHHHHH
Confidence 9888776432110 0 011234578899999999999998887655444 5899999999999999999999
Q ss_pred cCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEE
Q 001162 862 LPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLL 941 (1134)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VL 941 (1134)
+|+++++.|...+.+++.|+|||||||||||++|+++|++++.+|+.+++++++++|+|++++.++.+|+.|+...||||
T Consensus 471 ~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~ii 550 (733)
T TIGR01243 471 WPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAII 550 (733)
T ss_pred hhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCcccccCCCCCC-CCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHH
Q 001162 942 FFDEFDSIAPKRGHD-NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDI 1020 (1134)
Q Consensus 942 fiDEid~l~~~r~~~-~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~I 1020 (1134)
||||||++++.|+.+ ..+..++++++||++||++...++++||+|||+|+.||++++||||||+.++||+|+.++|.+|
T Consensus 551 fiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i 630 (733)
T TIGR01243 551 FFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEI 630 (733)
T ss_pred EEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHH
Confidence 999999999988754 3456789999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCC-------CCCCcccccHHHHHHHHhhc
Q 001162 1021 LKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN-------EPGKMPVITDALLKSIASKA 1093 (1134)
Q Consensus 1021 l~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~-------~~~~~~~it~e~l~~al~~~ 1093 (1134)
|+.+.++.++..+++++.||+.++||||+||.++|++|++.|+++.+...... .......|+.+||..|++++
T Consensus 631 ~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~ 710 (733)
T TIGR01243 631 FKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKV 710 (733)
T ss_pred HHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999876432211 01123579999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhh
Q 001162 1094 RPSVSEAEKLRLYSIYGQFL 1113 (1134)
Q Consensus 1094 ~ps~~~~~~~~~~~~~~~f~ 1113 (1134)
+||++++++.+|++|-++|.
T Consensus 711 ~ps~~~~~~~~~~~~~~~~~ 730 (733)
T TIGR01243 711 KPSVSKEDMLRYERLAKELK 730 (733)
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999998884
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-56 Score=536.50 Aligned_cols=481 Identities=36% Similarity=0.554 Sum_probs=422.3
Q ss_pred chhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCe
Q 001162 578 SGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPS 657 (1134)
Q Consensus 578 ~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~Ps 657 (1134)
.+..+..++..++.+++++||||+|||+++++++.. . .+...++.......+.+.....+...|..+....|+
T Consensus 6 ~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 78 (494)
T COG0464 6 EPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-G------AEFLSINGPEILSKYVGESELRLRELFEEAEKLAPS 78 (494)
T ss_pred CHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-c------CcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCC
Confidence 345677788999999999999999999999999998 3 333667778888888888889999999999999999
Q ss_pred EEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCcccccc
Q 001162 658 IVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQ 737 (1134)
Q Consensus 658 IL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~ 737 (1134)
++++||+|.+.+.+... .......+...+...++... . +.+.+++.++.+..+++++++++||+..+.
T Consensus 79 ii~~d~~~~~~~~~~~~----~~~~~~~v~~~l~~~~d~~~-~-------~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (494)
T COG0464 79 IIFIDEIDALAPKRSSD----QGEVERRVVAQLLALMDGLK-R-------GQVIVIGATNRPDGLDPAKRRPGRFDREIE 146 (494)
T ss_pred eEeechhhhcccCcccc----ccchhhHHHHHHHHhccccc-C-------CceEEEeecCCccccChhHhCccccceeee
Confidence 99999999999765541 12223466777777777765 1 137888899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhH
Q 001162 738 LPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFS 817 (1134)
Q Consensus 738 l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~ 817 (1134)
+..|+...+.+|+.......... .+..+..++..+.||.++|+..++..+...+..+.. ........++.++|.
T Consensus 147 ~~~~~~~~~~ei~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~-----~~~~~~~~~~~~~~~ 220 (494)
T COG0464 147 VNLPDEAGRLEILQIHTRLMFLG-PPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI-----DLVGEYIGVTEDDFE 220 (494)
T ss_pred cCCCCHHHHHHHHHHHHhcCCCc-ccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh-----ccCcccccccHHHHH
Confidence 99999999999988765443222 255688999999999999999999988888877742 011233568889999
Q ss_pred hhhhccccceeccccccccCCCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHH
Q 001162 818 QAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGA 897 (1134)
Q Consensus 818 ~Al~~~~P~~lr~v~~~~~~~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~a 897 (1134)
.+++.+.|+ +++.... +.+.|++++|++.+++.+++.+.+++++++.|...+++++.++|||||||||||++|++
T Consensus 221 ~~l~~~~~~--~~~~~~~---~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAka 295 (494)
T COG0464 221 EALKKVLPS--RGVLFED---EDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKA 295 (494)
T ss_pred HHHHhcCcc--cccccCC---CCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHH
Confidence 999999887 4444433 35899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccc
Q 001162 898 AAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV 977 (1134)
Q Consensus 898 lA~~~~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~ 977 (1134)
+|.+++.+|+.+++++++++|+|++++.++.+|..|+..+||||||||+|++++.|+.+..+...|++++++++|++++.
T Consensus 296 va~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~ 375 (494)
T COG0464 296 VALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEK 375 (494)
T ss_pred HHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999888777778999999999999999
Q ss_pred cccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCC--CCCcccHHHHHHhccCCcHHHHHHHH
Q 001162 978 LTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLP--LADDVDLEAIAHMTEGFSGADLQALL 1055 (1134)
Q Consensus 978 ~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~--~~~~vd~~~La~~t~g~sg~dl~~l~ 1055 (1134)
..+|+||+|||+|+.+|+|++||||||+.++||+|+.++|.+||+.++++.. +..++++..+++.++||+|+||.++|
T Consensus 376 ~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~ 455 (494)
T COG0464 376 AEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALV 455 (494)
T ss_pred cCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999654 45889999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhcCCCCc
Q 001162 1056 SDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARPSVS 1098 (1134)
Q Consensus 1056 ~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~~ps~~ 1098 (1134)
++|++.++++.. ...+|.+||..|++.++|+++
T Consensus 456 ~ea~~~~~~~~~----------~~~~~~~~~~~a~~~~~p~~~ 488 (494)
T COG0464 456 REAALEALREAR----------RREVTLDDFLDALKKIKPSVT 488 (494)
T ss_pred HHHHHHHHHHhc----------cCCccHHHHHHHHHhcCCCCC
Confidence 999999998854 246999999999999999987
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-52 Score=451.07 Aligned_cols=246 Identities=42% Similarity=0.665 Sum_probs=233.6
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchh
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 917 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~ 917 (1134)
.+.+.|++|||+++..+.+++.+++|+++|++|.+.|+.||+|+|||||||||||+||+|+|++.+++|+.+.+++|+.+
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqK 224 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQK 224 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcch---hhHHHhHhhhcccccccccEEEEEecCCCCccc
Q 001162 918 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT---DRVVNQFLTELDGVEVLTGVFVFAATSRPDLLD 994 (1134)
Q Consensus 918 ~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~---~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld 994 (1134)
|+|+..+.+|++|+.|+.++||||||||||+++.+|-.+.++.. .|.+-+||++|||+...++|=||+||||+|.||
T Consensus 225 YiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LD 304 (406)
T COG1222 225 YIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILD 304 (406)
T ss_pred HhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccC
Confidence 99999999999999999999999999999999999976655544 467778899999999999999999999999999
Q ss_pred hhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 001162 995 AALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNE 1074 (1134)
Q Consensus 995 ~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~ 1074 (1134)
|||+||||||+.|+||+|+.+.|.+||+.+.+++.+..++|++.||+.++|+|||||+++|.+|.+.|+++.
T Consensus 305 PALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~-------- 376 (406)
T COG1222 305 PALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER-------- 376 (406)
T ss_pred hhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred CCCcccccHHHHHHHHhhcC
Q 001162 1075 PGKMPVITDALLKSIASKAR 1094 (1134)
Q Consensus 1075 ~~~~~~it~e~l~~al~~~~ 1094 (1134)
+..+|++||.+|.+++.
T Consensus 377 ---R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 377 ---RDEVTMEDFLKAVEKVV 393 (406)
T ss_pred ---cCeecHHHHHHHHHHHH
Confidence 35799999999998753
No 8
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-46 Score=408.74 Aligned_cols=273 Identities=33% Similarity=0.537 Sum_probs=251.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
+.+.|+||.|++++|+.|++.+.+|+..|++|+.. .+|=+|+|++||||||||+||+|+|.+|+..|+.|+.+.+.+||
T Consensus 207 p~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKw 285 (491)
T KOG0738|consen 207 PNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKW 285 (491)
T ss_pred CCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhh
Confidence 45899999999999999999999999999999864 46668999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCC-CCcchhhHHHhHhhhccccccc----ccEEEEEecCCCCcc
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD-NTGVTDRVVNQFLTELDGVEVL----TGVFVFAATSRPDLL 993 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~-~~~~~~rv~~~lL~~ld~~~~~----~~v~vIatTn~p~~l 993 (1134)
-|++|+.+|-+|+.|+..+|++|||||||+|..+||.+ ..+..+|+.++||.+|||+... ..|+|+|+||.||.|
T Consensus 286 RGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdi 365 (491)
T KOG0738|consen 286 RGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDI 365 (491)
T ss_pred ccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcch
Confidence 99999999999999999999999999999999999875 4677899999999999998642 349999999999999
Q ss_pred chhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCC
Q 001162 994 DAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN 1073 (1134)
Q Consensus 994 d~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~ 1073 (1134)
|.||+| ||.+.|++|+|+.+.|..+++..++...++++++++.|+..++||||+||.++|++|.+.+++|.+......
T Consensus 366 DEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ 443 (491)
T KOG0738|consen 366 DEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPR 443 (491)
T ss_pred HHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 999999 999999999999999999999999999999999999999999999999999999999999999877543321
Q ss_pred ------CCCCcccccHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhc
Q 001162 1074 ------EPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLD 1114 (1134)
Q Consensus 1074 ------~~~~~~~it~e~l~~al~~~~ps~~~~~~~~~~~~~~~f~~ 1114 (1134)
.+.-..+++.+||+.|+.+++||++...+.+|++|...|.+
T Consensus 444 ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 444 EIRQLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGS 490 (491)
T ss_pred HhhhhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcC
Confidence 11122579999999999999999999999999999999965
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-45 Score=415.39 Aligned_cols=229 Identities=40% Similarity=0.694 Sum_probs=222.4
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcc
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~ 919 (1134)
++.|.+|||++.....|.+.+.. +++|+.|...|+.|++|+||+||||||||+||+|+|++++++|+.|+++++++.+.
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 57899999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccc----cccEEEEEecCCCCccch
Q 001162 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV----LTGVFVFAATSRPDLLDA 995 (1134)
Q Consensus 920 G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~----~~~v~vIatTn~p~~ld~ 995 (1134)
|++|+.+|++|+.|+...|||+||||||++.|+|...+.+..+|++.|||+.||++.. +++|+|||||||||.|||
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDp 344 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDP 344 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCH
Confidence 9999999999999999999999999999999999999999999999999999999764 367999999999999999
Q ss_pred hhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhc
Q 001162 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNN 1069 (1134)
Q Consensus 996 allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~ 1069 (1134)
||+|+||||+.|.+..|+..+|.+||+.+++++.++.++|+..||+.|.||.|+||.++|++|+..|+.|.++.
T Consensus 345 aLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~ 418 (802)
T KOG0733|consen 345 ALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQ 418 (802)
T ss_pred HHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998864
No 10
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=2.4e-42 Score=408.54 Aligned_cols=396 Identities=22% Similarity=0.363 Sum_probs=309.7
Q ss_pred CCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccc
Q 001162 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDF 734 (1134)
Q Consensus 655 ~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~ 734 (1134)
.|++++|.|+|.++. .+ .+.+.|.++...+.... ..+|+.+. .-.+|+.|.+ +-.
T Consensus 81 ~~~~~vl~d~h~~~~---------~~----~~~r~l~~l~~~~~~~~-------~~~i~~~~--~~~~p~el~~---~~~ 135 (489)
T CHL00195 81 TPALFLLKDFNRFLN---------DI----SISRKLRNLSRILKTQP-------KTIIIIAS--ELNIPKELKD---LIT 135 (489)
T ss_pred CCcEEEEecchhhhc---------ch----HHHHHHHHHHHHHHhCC-------CEEEEEcC--CCCCCHHHHh---cee
Confidence 478999999999972 11 23344444433332211 23444443 2467888875 445
Q ss_pred cccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcccccCCCccccccccccchh
Q 001162 735 HVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRD 814 (1134)
Q Consensus 735 ~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~e 814 (1134)
.+.+|.|+.+|+.++++.+....+...++..++.++..+.|++..+++.++.++.... . .++.+
T Consensus 136 ~~~~~lP~~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~-~---------------~~~~~ 199 (489)
T CHL00195 136 VLEFPLPTESEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIATY-K---------------TIDEN 199 (489)
T ss_pred EEeecCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-C---------------CCChh
Confidence 7899999999999999988876677889999999999999999999999988754311 1 12222
Q ss_pred hhHhhhhccccceec-cccccccCCCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhH
Q 001162 815 DFSQAMHEFLPVAMR-DITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTH 893 (1134)
Q Consensus 815 Df~~Al~~~~P~~lr-~v~~~~~~~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~ 893 (1134)
+....++.......+ ++.... .+...|++|||++.+|+.+.+.... +.......|+++++|+|||||||||||+
T Consensus 200 ~~~~i~~~k~q~~~~~~~le~~--~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTl 274 (489)
T CHL00195 200 SIPLILEEKKQIISQTEILEFY--SVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSL 274 (489)
T ss_pred hHHHHHHHHHHHHhhhcccccc--CCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHH
Confidence 221111110000000 111111 1346899999999999999876542 2344566788999999999999999999
Q ss_pred HHHHHHHHcCCcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCC-CCCCcchhhHHHhHhhhc
Q 001162 894 IVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRG-HDNTGVTDRVVNQFLTEL 972 (1134)
Q Consensus 894 lA~alA~~~~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~-~~~~~~~~rv~~~lL~~l 972 (1134)
+|+++|++++.+|+.++++.+.++|+|+++..++++|+.|+..+||||||||||+++.+++ .+..+...+++++|++.|
T Consensus 275 lAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l 354 (489)
T CHL00195 275 TAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWL 354 (489)
T ss_pred HHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988643 334567789999999999
Q ss_pred ccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC--CcccHHHHHHhccCCcHHH
Q 001162 973 DGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA--DDVDLEAIAHMTEGFSGAD 1050 (1134)
Q Consensus 973 d~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~--~~vd~~~La~~t~g~sg~d 1050 (1134)
+. ...+|+||+|||+++.||++++|+||||+.++|+.|+.++|.+||+.++++.... .+++++.||+.|+||||+|
T Consensus 355 ~~--~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAd 432 (489)
T CHL00195 355 SE--KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAE 432 (489)
T ss_pred hc--CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHH
Confidence 83 4568999999999999999999999999999999999999999999999886532 5789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhcCCC--CcHHHHHHHHHHHH
Q 001162 1051 LQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARPS--VSEAEKLRLYSIYG 1110 (1134)
Q Consensus 1051 l~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~~ps--~~~~~~~~~~~~~~ 1110 (1134)
|+++|.+|+..|+.+ ...+|.+||..|++.+.|+ +..+++..++.|-.
T Consensus 433 I~~lv~eA~~~A~~~------------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~ 482 (489)
T CHL00195 433 IEQSIIEAMYIAFYE------------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWAS 482 (489)
T ss_pred HHHHHHHHHHHHHHc------------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHH
Confidence 999999999888643 1358999999999999996 45678888888854
No 11
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-43 Score=390.08 Aligned_cols=241 Identities=37% Similarity=0.625 Sum_probs=229.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcc
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~ 919 (1134)
++.|+|+-|.+++|+.|.+.+++ ++.|..|.+.|-+.|+|+||.||||||||+||||+|.+.+.+|+...+++|-..|+
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 57899999999999999999885 78999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcC
Q 001162 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLR 999 (1134)
Q Consensus 920 G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allr 999 (1134)
|...+++|++|..|++.+||||||||||++..+|......+.+..+||||.+|||+....+|+||||||.|+.||+||.|
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~R 458 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTR 458 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcC
Confidence 99999999999999999999999999999999998776668999999999999999999999999999999999999999
Q ss_pred cCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcc
Q 001162 1000 PGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMP 1079 (1134)
Q Consensus 1000 pgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~ 1079 (1134)
|||||+.|.+|.||..-|.+||+.++.+..++.++|+..||+-|.||+|+||.++++.|++.|... +..
T Consensus 459 PGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d-----------ga~ 527 (752)
T KOG0734|consen 459 PGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD-----------GAE 527 (752)
T ss_pred CCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc-----------Ccc
Confidence 999999999999999999999999999999999999999999999999999999999999988654 335
Q ss_pred cccHHHHHHHHhh
Q 001162 1080 VITDALLKSIASK 1092 (1134)
Q Consensus 1080 ~it~e~l~~al~~ 1092 (1134)
.+|+.||+.|-.+
T Consensus 528 ~VtM~~LE~akDr 540 (752)
T KOG0734|consen 528 MVTMKHLEFAKDR 540 (752)
T ss_pred cccHHHHhhhhhh
Confidence 6999999998764
No 12
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-42 Score=365.79 Aligned_cols=274 Identities=30% Similarity=0.557 Sum_probs=249.2
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchh
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 917 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~ 917 (1134)
.+++.|+|+.|++.+|+.|++.+.+|+++|.+|..- ..|-+|+||||||||||++||+|+|.+.+..|++|+.++|+++
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk-R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSK 205 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK-RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 205 (439)
T ss_pred CCCCchhhhccchhHHHHHHhheeecccchhhhcCC-CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHH
Confidence 357999999999999999999999999999999853 3556799999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccc-cccEEEEEecCCCCccchh
Q 001162 918 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV-LTGVFVFAATSRPDLLDAA 996 (1134)
Q Consensus 918 ~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~-~~~v~vIatTn~p~~ld~a 996 (1134)
|.|++|+.++.+|+.|+.++|+||||||||+++..|+...++..+|+..+||.+|.|+.. .++|+|+++||-|+.||.|
T Consensus 206 WmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsA 285 (439)
T KOG0739|consen 206 WMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSA 285 (439)
T ss_pred HhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999864 5689999999999999999
Q ss_pred hcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccC----
Q 001162 997 LLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNID---- 1071 (1134)
Q Consensus 997 llrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~---- 1071 (1134)
++| ||++.||+|+|+...|..+|+.++...+.. .+.|+.+|++.|+||||+||.-+++.|.+..+++.-++..
T Consensus 286 IRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqsAthFk~v 363 (439)
T KOG0739|consen 286 IRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQSATHFKKV 363 (439)
T ss_pred HHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhhhhhhhcc
Confidence 999 999999999999999999999999877643 6788999999999999999999999999999988653311
Q ss_pred -C------------------------------CCCCCcccccHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhc
Q 001162 1072 -S------------------------------NEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLD 1114 (1134)
Q Consensus 1072 -~------------------------------~~~~~~~~it~e~l~~al~~~~ps~~~~~~~~~~~~~~~f~~ 1114 (1134)
. .+.--.|.+|+.||..+++.++|.++...+.+++++-+.|..
T Consensus 364 ~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFGq 437 (439)
T KOG0739|consen 364 SGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFGQ 437 (439)
T ss_pred CCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhcc
Confidence 0 012244789999999999999999999999999998888853
No 13
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-42 Score=352.19 Aligned_cols=245 Identities=38% Similarity=0.611 Sum_probs=231.4
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccch
Q 001162 837 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 916 (1134)
Q Consensus 837 ~~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~ 916 (1134)
+.+.+.+.|+||++-.|+.+++.+++|+.+.+++.+.|+.|++|+|+|||||||||+||+++|+.....||.+.+++|..
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchh---hHHHhHhhhcccccccccEEEEEecCCCCcc
Q 001162 917 KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLL 993 (1134)
Q Consensus 917 ~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~---rv~~~lL~~ld~~~~~~~v~vIatTn~p~~l 993 (1134)
+|.|+..+.+|++|+.|+.++|+||||||+|+++.+|-..+++..+ |++-+||++|||+....+|-||.+||+.+.+
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 9999999999999999999999999999999999999777766554 6777889999999999999999999999999
Q ss_pred chhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCC
Q 001162 994 DAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN 1073 (1134)
Q Consensus 994 d~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~ 1073 (1134)
||||+||||+|+.|.||+|+..++.-+|..+..++.+.+++|++.+..+.+..||+||.++|++|.+.|+++.
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n------- 380 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN------- 380 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred CCCCcccccHHHHHHHHhh
Q 001162 1074 EPGKMPVITDALLKSIASK 1092 (1134)
Q Consensus 1074 ~~~~~~~it~e~l~~al~~ 1092 (1134)
+-.+...||+++.+.
T Consensus 381 ----ryvvl~kd~e~ay~~ 395 (408)
T KOG0727|consen 381 ----RYVVLQKDFEKAYKT 395 (408)
T ss_pred ----ceeeeHHHHHHHHHh
Confidence 346888999998865
No 14
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-41 Score=345.53 Aligned_cols=250 Identities=39% Similarity=0.602 Sum_probs=232.6
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchh
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 917 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~ 917 (1134)
.+...|+-+||++...+.+++.+++|.+||++|...|+..|.|+|||||||||||.+|+++|....+.||.++++++..+
T Consensus 141 vPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk 220 (404)
T KOG0728|consen 141 VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 220 (404)
T ss_pred CCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHH
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcc---hhhHHHhHhhhcccccccccEEEEEecCCCCccc
Q 001162 918 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGV---TDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLD 994 (1134)
Q Consensus 918 ~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~---~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld 994 (1134)
|+|+..+.+|++|-.|+.++|+|||.||||++...|..++.+- ..|.+-+||.+|||++...++-||.+||+.|.+|
T Consensus 221 ~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild 300 (404)
T KOG0728|consen 221 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILD 300 (404)
T ss_pred HhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccccccc
Confidence 9999999999999999999999999999999999887655443 3466778889999999999999999999999999
Q ss_pred hhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 001162 995 AALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNE 1074 (1134)
Q Consensus 995 ~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~ 1074 (1134)
|||+||||+|+.|.||+|+.+.|.+||+.+.+++.+...+++..+|....|.||++++++|.+|.+.|+++-
T Consensus 301 ~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer-------- 372 (404)
T KOG0728|consen 301 PALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER-------- 372 (404)
T ss_pred HhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CCCcccccHHHHHHHHhhcCCCCc
Q 001162 1075 PGKMPVITDALLKSIASKARPSVS 1098 (1134)
Q Consensus 1075 ~~~~~~it~e~l~~al~~~~ps~~ 1098 (1134)
+.-+|.|||+-|+.++-.-.+
T Consensus 373 ---rvhvtqedfemav~kvm~k~~ 393 (404)
T KOG0728|consen 373 ---RVHVTQEDFEMAVAKVMQKDS 393 (404)
T ss_pred ---hccccHHHHHHHHHHHHhccc
Confidence 346899999999887644333
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-40 Score=340.80 Aligned_cols=245 Identities=35% Similarity=0.553 Sum_probs=227.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
+...|.||||++...+.|.+.+.+|+.|++.|.+.|++||.|+|+|||||||||++|++.|...+..|+.+-++.|+..|
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMf 245 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 245 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhh
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcc---hhhHHHhHhhhcccccccccEEEEEecCCCCccch
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGV---TDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~---~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~ 995 (1134)
+|+..+.+|+.|..|+..+|+||||||+|++..+|-.+...- ..|.+-+||.+|||+...+.|-||++|||.+.+||
T Consensus 246 IGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDP 325 (424)
T KOG0652|consen 246 IGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDP 325 (424)
T ss_pred hcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCH
Confidence 999999999999999999999999999999999885443222 23566778899999999999999999999999999
Q ss_pred hhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 001162 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEP 1075 (1134)
Q Consensus 996 allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 1075 (1134)
||+|.||+|+.|.||.|+.+.|.+|++.+.+++.+.+|+++++||+.|++|+|++++++|-+|.+.|+++..
T Consensus 326 ALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~a-------- 397 (424)
T KOG0652|consen 326 ALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGA-------- 397 (424)
T ss_pred HHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999998743
Q ss_pred CCcccccHHHHHHHHhhcC
Q 001162 1076 GKMPVITDALLKSIASKAR 1094 (1134)
Q Consensus 1076 ~~~~~it~e~l~~al~~~~ 1094 (1134)
..++.+||...+.+++
T Consensus 398 ---tev~heDfmegI~eVq 413 (424)
T KOG0652|consen 398 ---TEVTHEDFMEGILEVQ 413 (424)
T ss_pred ---ccccHHHHHHHHHHHH
Confidence 3589999998886653
No 16
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-39 Score=364.90 Aligned_cols=441 Identities=20% Similarity=0.295 Sum_probs=322.6
Q ss_pred ccccccccccccchhhHHHHHHHHHH--hcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEE
Q 001162 547 QGFDSNVSSLSWMGTTASDVINRIKV--LLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHI 624 (1134)
Q Consensus 547 ~~~~~~~~~l~G~~~~~~~i~~~l~~--ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~ 624 (1134)
.++...-..+||++.....|..+.-. ++. +....++|++.-+|+|||||||||||.+||.|.+.|+... -
T Consensus 214 Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFp---p~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAre-----P 285 (744)
T KOG0741|consen 214 PDFNFESMGIGGLDKEFSDIFRRAFASRVFP---PEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNARE-----P 285 (744)
T ss_pred CCCChhhcccccchHHHHHHHHHHHHhhcCC---HHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCC-----C
Confidence 34555556789999999999876522 333 5688899999999999999999999999999999998643 3
Q ss_pred EEEecccccccchhhHHHHHHHHHHHHhhc--------CCeEEEEcccchhccCCCCCCCC-CCchhHHHHHHHHHHHHH
Q 001162 625 VFVCCSRLSLEKGPIIRQALSNFISEALDH--------APSIVIFDNLDSIISSSSDPEGS-QPSTSVIALTKFLVDIMD 695 (1134)
Q Consensus 625 ~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~--------~PsIL~IDEiD~L~~~~~~~~~~-~~~~~~~~l~~~L~~~ld 695 (1134)
..|+.-++..+++|+.+..++++|..|..- .=.|+++||||.+|.+|+...+. +.. ..+.++|+.-||
T Consensus 286 KIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVh---D~VVNQLLsKmD 362 (744)
T KOG0741|consen 286 KIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVH---DTVVNQLLSKMD 362 (744)
T ss_pred cccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCcc---HHHHHHHHHhcc
Confidence 457888888999999999999999887532 12399999999999887766653 223 377888888888
Q ss_pred HhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhh---cccCCCHHHHHHHhhh
Q 001162 696 EYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR---RSLECSDEILLDVASK 772 (1134)
Q Consensus 696 ~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~---~~l~~~~~~l~~la~~ 772 (1134)
+...- .++.||+.||+++.||.+|+|||||..++++..||++.|.+|++-+..+ ++.--++-++.++|..
T Consensus 363 GVeqL-------NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~l 435 (744)
T KOG0741|consen 363 GVEQL-------NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAAL 435 (744)
T ss_pred cHHhh-------hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHH
Confidence 76543 2699999999999999999999999999999999999999999866543 3333344469999999
Q ss_pred cCCCChhhHHHHHHHHHHHHhcccccCCC----ccccccccccchhhhHhhhhccccceeccccccc--cCCCCCCCCCC
Q 001162 773 CDGYDAYDLEILVDRTVHAAVGRYLHSDS----SFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTS--AEGGRSGWDDV 846 (1134)
Q Consensus 773 teG~s~~DL~~Lv~~a~~~a~~r~~~~~~----~~~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~--~~~~~~~~~~i 846 (1134)
|..|+|++|+.+++.|...|+.|....+. .....++..++++||..|++++.|+....-.... .......|..-
T Consensus 436 TKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~ 515 (744)
T KOG0741|consen 436 TKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPP 515 (744)
T ss_pred hcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeeccc
Confidence 99999999999999999999999875441 2233455779999999999999997543211000 01111233321
Q ss_pred C--ChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcccccH-
Q 001162 847 G--GLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASE- 923 (1134)
Q Consensus 847 ~--gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~G~se- 923 (1134)
+ .+++-+..++ -.+.....+-..+||.||||+|||+||.-+|...+.||+.+-.++= .+|.+|
T Consensus 516 v~~il~~G~llv~-----------qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~---miG~sEs 581 (744)
T KOG0741|consen 516 VTRILDDGKLLVQ-----------QVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPED---MIGLSES 581 (744)
T ss_pred HHHHHhhHHHHHH-----------HhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHH---ccCccHH
Confidence 1 1111111111 1122223345679999999999999999999999999999877653 356665
Q ss_pred ---HHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc-ccccEEEEEecCCCCccch-hhc
Q 001162 924 ---QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-VLTGVFVFAATSRPDLLDA-ALL 998 (1134)
Q Consensus 924 ---~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~-~~~~v~vIatTn~p~~ld~-all 998 (1134)
..++.+|+.|.+..-+||++|++++|..-.. -..-+..-++..|+..+.... .+.+.+|++||++.+.+.. .++
T Consensus 582 aKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vp-IGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~ 660 (744)
T KOG0741|consen 582 AKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVP-IGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGIL 660 (744)
T ss_pred HHHHHHHHHHHHhhcCcceEEEEcchhhhhcccc-cCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHH
Confidence 4588999999998889999999999963110 111223334444444454433 3457899999998777543 344
Q ss_pred CcCcccceeecCCCCH-HHHHHHHH
Q 001162 999 RPGRLDRLLFCDFPSP-RERLDILK 1022 (1134)
Q Consensus 999 rpgRfd~~i~~~~p~~-~er~~Il~ 1022 (1134)
. .|+..+.+|..+. ++..+++.
T Consensus 661 ~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 661 D--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred H--hhhheeecCccCchHHHHHHHH
Confidence 5 7889999987654 66666665
No 17
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-40 Score=343.59 Aligned_cols=244 Identities=35% Similarity=0.594 Sum_probs=227.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
+...|.|+||++...+.+++.+++|+.||+.+...|+.||.|++|||+||||||.||+|+|+...+.|+.+-+++|+.+|
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQky 259 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 259 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcch---hhHHHhHhhhcccccccccEEEEEecCCCCccch
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT---DRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~---~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~ 995 (1134)
.|+..+.+|++|+.|..++|+|+||||||++..+|=..+++-. .|.+-+||.+|||+.....|-||.|||+.+.+||
T Consensus 260 lGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDP 339 (440)
T KOG0726|consen 260 LGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDP 339 (440)
T ss_pred hccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCH
Confidence 9999999999999999999999999999999998855444433 3555678889999999999999999999999999
Q ss_pred hhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 001162 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEP 1075 (1134)
Q Consensus 996 allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 1075 (1134)
||+||||+|+.|.||.|+...+..||..+..++.+..+++++.+...-+.+||+||+++|.+|.+.|+++..
T Consensus 340 aLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerR-------- 411 (440)
T KOG0726|consen 340 ALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERR-------- 411 (440)
T ss_pred hhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHH--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999998743
Q ss_pred CCcccccHHHHHHHHhhc
Q 001162 1076 GKMPVITDALLKSIASKA 1093 (1134)
Q Consensus 1076 ~~~~~it~e~l~~al~~~ 1093 (1134)
..+|.+||.+|.+.+
T Consensus 412 ---m~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 412 ---MKVTMEDFKKAKEKV 426 (440)
T ss_pred ---hhccHHHHHHHHHHH
Confidence 369999999998765
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2.9e-39 Score=334.82 Aligned_cols=239 Identities=34% Similarity=0.569 Sum_probs=215.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcc
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~ 919 (1134)
...++|++|++++|+..+-.+++ +..|+.|..+. |+++|||||||||||++|+++|++.+.+|+.++..+|++.|+
T Consensus 117 ~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~WA---PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV 192 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEY-LENPERFGDWA---PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV 192 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHH-hhChHHhcccC---cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh
Confidence 47899999999999987766654 67788888775 569999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCC-CCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhc
Q 001162 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD-NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALL 998 (1134)
Q Consensus 920 G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~-~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~all 998 (1134)
|+..+.++++|++|+..+|||+||||+|+++-.|.-. -.+...+++|.||++|||+..+.+|+.||+||+|+.||||++
T Consensus 193 Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiR 272 (368)
T COG1223 193 GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIR 272 (368)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHH
Confidence 9999999999999999999999999999999877643 356678999999999999999999999999999999999999
Q ss_pred CcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHH-HHHHHHHHHHHHHHHhccCCCCCCC
Q 001162 999 RPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQ-ALLSDAQLSAVHEILNNIDSNEPGK 1077 (1134)
Q Consensus 999 rpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~-~l~~~A~~~a~~~~~~~~~~~~~~~ 1077 (1134)
+ ||...|.|.+|+.++|..|++.+++++++.-+.++..+++.+.||||+||. .++..|...|+.+ +
T Consensus 273 s--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~e-----------d 339 (368)
T COG1223 273 S--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAE-----------D 339 (368)
T ss_pred h--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHh-----------c
Confidence 9 999999999999999999999999999999999999999999999999996 4556555566554 3
Q ss_pred cccccHHHHHHHHhhcCC
Q 001162 1078 MPVITDALLKSIASKARP 1095 (1134)
Q Consensus 1078 ~~~it~e~l~~al~~~~p 1095 (1134)
+..|+.+|+.+|+++.++
T Consensus 340 ~e~v~~edie~al~k~r~ 357 (368)
T COG1223 340 REKVEREDIEKALKKERK 357 (368)
T ss_pred hhhhhHHHHHHHHHhhcc
Confidence 457999999999987554
No 19
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-38 Score=380.80 Aligned_cols=242 Identities=39% Similarity=0.647 Sum_probs=227.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
..+.|+|+.|.+++|+.|+|.+.. +++|+.|.+.|.+.|+|+||+||||||||+||+|+|.|.|.||+.++++||+..+
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 358999999999999999999985 8999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCC----CCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccc
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH----DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLD 994 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~----~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld 994 (1134)
.|....++|++|..|+..+|||+||||||++...|+. ..+......+||||.+|||+...++|+|+|+||+|+.+|
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 9999999999999999999999999999999999942 344556788999999999999999999999999999999
Q ss_pred hhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCC
Q 001162 995 AALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN 1073 (1134)
Q Consensus 995 ~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~ 1073 (1134)
+||+||||||+.|+++.|+...|.+|++.++++..++ +++|+..+|..|.||+|+||.++|++|++.|+++..
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~------ 538 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL------ 538 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc------
Confidence 9999999999999999999999999999999999985 889999999999999999999999999999988733
Q ss_pred CCCCcccccHHHHHHHHhh
Q 001162 1074 EPGKMPVITDALLKSIASK 1092 (1134)
Q Consensus 1074 ~~~~~~~it~e~l~~al~~ 1092 (1134)
..|+..||..|++.
T Consensus 539 -----~~i~~~~~~~a~~R 552 (774)
T KOG0731|consen 539 -----REIGTKDLEYAIER 552 (774)
T ss_pred -----CccchhhHHHHHHH
Confidence 46899999999983
No 20
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-39 Score=349.93 Aligned_cols=258 Identities=36% Similarity=0.581 Sum_probs=236.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCC-CCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchh
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAP-LRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 917 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~-~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~ 917 (1134)
..+.|+||||++.+++++++.+.+|++++++|...+ ++++.|+|||||||||||++|+++|++.|++|+.|.++.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 358999999999999999999999999999997554 4789999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccccccc--EEEEEecCCCCccch
Q 001162 918 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTG--VFVFAATSRPDLLDA 995 (1134)
Q Consensus 918 ~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~--v~vIatTn~p~~ld~ 995 (1134)
|.|++++.++.+|-.|..-+||||||||+|++...|+....+....+.++|....||+...++ |+|+||||||..+|.
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDe 246 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDE 246 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHH
Confidence 999999999999999999999999999999999999777788888999999999999886654 999999999999999
Q ss_pred hhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhcc--CCC
Q 001162 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNI--DSN 1073 (1134)
Q Consensus 996 allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~--~~~ 1073 (1134)
|++| |+.+.++++.|+..+|.+||+.++++..+++++|+..+|..|+||||.||..+|..|++..+++.+... ...
T Consensus 247 AiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~~d 324 (386)
T KOG0737|consen 247 AIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGLLD 324 (386)
T ss_pred HHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccchh
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999998764 100
Q ss_pred C---------------CCCcccccHHHHHHHHhhcCCCCc
Q 001162 1074 E---------------PGKMPVITDALLKSIASKARPSVS 1098 (1134)
Q Consensus 1074 ~---------------~~~~~~it~e~l~~al~~~~ps~~ 1098 (1134)
. ......++++||..+...+.+++.
T Consensus 325 ~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~ 364 (386)
T KOG0737|consen 325 LDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVA 364 (386)
T ss_pred hhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHH
Confidence 0 011467899999999987766643
No 21
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-39 Score=332.22 Aligned_cols=245 Identities=33% Similarity=0.578 Sum_probs=227.1
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchh
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 917 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~ 917 (1134)
.+.+.+.|+||..+..+.|++.++.|+.+|+.|.+.|+.|+.|+|+|||||||||++|+|+|+..++-||.+-+++|+.+
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqk 250 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQK 250 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcc---hhhHHHhHhhhcccccccccEEEEEecCCCCccc
Q 001162 918 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGV---TDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLD 994 (1134)
Q Consensus 918 ~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~---~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld 994 (1134)
|+|+..+.+|++|+.|+..+-|||||||||++.+.|-.+..+- ..|.+-+++++|||+.+..++-|+.+||+|+.+|
T Consensus 251 yvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtld 330 (435)
T KOG0729|consen 251 YVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLD 330 (435)
T ss_pred HhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcC
Confidence 9999999999999999999999999999999988875443332 3466677888999999999999999999999999
Q ss_pred hhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 001162 995 AALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNE 1074 (1134)
Q Consensus 995 ~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~ 1074 (1134)
|||+||||+|+.+.|.+|+.+.|..||+.+.+.+.+..++-++.||+.+..-+|++|+.+|.+|.+.|++.-.
T Consensus 331 pallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarr------- 403 (435)
T KOG0729|consen 331 PALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARR------- 403 (435)
T ss_pred HhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHh-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987632
Q ss_pred CCCcccccHHHHHHHHhhc
Q 001162 1075 PGKMPVITDALLKSIASKA 1093 (1134)
Q Consensus 1075 ~~~~~~it~e~l~~al~~~ 1093 (1134)
...|..||..|+.++
T Consensus 404 ----k~atekdfl~av~kv 418 (435)
T KOG0729|consen 404 ----KVATEKDFLDAVNKV 418 (435)
T ss_pred ----hhhhHHHHHHHHHHH
Confidence 367889999888654
No 22
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=4.9e-38 Score=365.03 Aligned_cols=246 Identities=38% Similarity=0.590 Sum_probs=229.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
+.+.|+||||++.+++.+++.+++|+.++++|.+.|+.++.|+|||||||||||++|+++|++++.+|+.+.++++..+|
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~ 219 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKY 219 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCc---chhhHHHhHhhhcccccccccEEEEEecCCCCccch
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~---~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~ 995 (1134)
.|+++..++++|..|+..+|+||||||+|.++.+|.....+ ...+++.+++.+||++....+++||+|||+|+.+||
T Consensus 220 ~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDp 299 (398)
T PTZ00454 220 LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 299 (398)
T ss_pred cchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCH
Confidence 99999999999999999999999999999999887543322 345788999999999888889999999999999999
Q ss_pred hhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 001162 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEP 1075 (1134)
Q Consensus 996 allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 1075 (1134)
+++||||||+.|+|++|+.++|..||+.+++++++..+++++.++..++||+|+||+++|++|++.|+++.
T Consensus 300 AllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~--------- 370 (398)
T PTZ00454 300 ALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN--------- 370 (398)
T ss_pred HHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999998762
Q ss_pred CCcccccHHHHHHHHhhcCC
Q 001162 1076 GKMPVITDALLKSIASKARP 1095 (1134)
Q Consensus 1076 ~~~~~it~e~l~~al~~~~p 1095 (1134)
...|+.+||..|+..+..
T Consensus 371 --~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 371 --RYVILPKDFEKGYKTVVR 388 (398)
T ss_pred --CCccCHHHHHHHHHHHHh
Confidence 347999999999988644
No 23
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-37 Score=335.50 Aligned_cols=248 Identities=23% Similarity=0.351 Sum_probs=215.4
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
..++.++||++.++++|.+.+...+ ..+++|..+|+.||+|||||||||||||.||||+|...+ +.|+.+..
T Consensus 147 dvtY~dIGGL~~Qi~EirE~VELPL--~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~------AtFIrvvg 218 (406)
T COG1222 147 DVTYEDIGGLDEQIQEIREVVELPL--KNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD------ATFIRVVG 218 (406)
T ss_pred CCChhhccCHHHHHHHHHHHhcccc--cCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC------ceEEEecc
Confidence 4567899999999999999875533 478899999999999999999999999999999999987 89999999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
+.|..++.|+....++++|..|+.++|||+||||||++.+++.+...+. ....++..-.|+..||++... ++
T Consensus 219 SElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~g-DrEVQRTmleLL~qlDGFD~~-------~n 290 (406)
T COG1222 219 SELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSG-DREVQRTMLELLNQLDGFDPR-------GN 290 (406)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCc-hHHHHHHHHHHHHhccCCCCC-------CC
Confidence 9999999999999999999999999999999999999998877665543 344445555566677777653 47
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
|-||++||+++.|||+|+|||||++.|+||.|+.+.|.+||+.+..+..+. .+-+++.+|..|+|++|+|++.+|.+|-
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~~~~g~sGAdlkaictEAG 369 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLARLTEGFSGADLKAICTEAG 369 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHHhcCCCchHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999887754432 3345999999999999999999999999
Q ss_pred HHHhcccccCCCccccccccccchhhhHhhhhcccc
Q 001162 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1134)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P 825 (1134)
..|++. ....++++||.+|.+....
T Consensus 370 m~AiR~-----------~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 370 MFAIRE-----------RRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred HHHHHh-----------ccCeecHHHHHHHHHHHHh
Confidence 999876 2356999999999877543
No 24
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=9.7e-37 Score=356.30 Aligned_cols=251 Identities=40% Similarity=0.653 Sum_probs=231.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
+...|++|+|+++.++.+.+.+.+|+.+++.|...|..++.++|||||||||||++|+++|++++.+|+.++++++..+|
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~ 205 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKF 205 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCc---chhhHHHhHhhhcccccccccEEEEEecCCCCccch
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~---~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~ 995 (1134)
.|+++..++.+|+.|+...|+||||||+|.++..|+.+... ...+.+.+++.+|+++...++++||+|||+++.+|+
T Consensus 206 ~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~ 285 (389)
T PRK03992 206 IGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDP 285 (389)
T ss_pred ccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCH
Confidence 99999999999999999999999999999999887654322 234677888999998888889999999999999999
Q ss_pred hhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 001162 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEP 1075 (1134)
Q Consensus 996 allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 1075 (1134)
+++||||||+.|+|++|+.++|.+||+.+++++.+..++++..+|..++||+|+||+++|++|++.|+++
T Consensus 286 allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~---------- 355 (389)
T PRK03992 286 AILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRD---------- 355 (389)
T ss_pred HHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc----------
Confidence 9999999999999999999999999999999999988899999999999999999999999999999875
Q ss_pred CCcccccHHHHHHHHhhcCCCCcHH
Q 001162 1076 GKMPVITDALLKSIASKARPSVSEA 1100 (1134)
Q Consensus 1076 ~~~~~it~e~l~~al~~~~ps~~~~ 1100 (1134)
....|+.+||.+|+..++++...+
T Consensus 356 -~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 356 -DRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred -CCCCcCHHHHHHHHHHHhcccccc
Confidence 234699999999999998865443
No 25
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=2.1e-36 Score=352.94 Aligned_cols=244 Identities=36% Similarity=0.602 Sum_probs=226.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
+...|+||+|+++.++.+.+.+.+|+.++++|...++.++.++|||||||||||++|+++|++++.+|+.+.++++.++|
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~ 257 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKY 257 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhh
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCc---chhhHHHhHhhhcccccccccEEEEEecCCCCccch
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~---~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~ 995 (1134)
.|+.+..++.+|..|+...|+||||||||+++.+|.....+ ...+.+.+++.+||++....++.||+|||+++.+|+
T Consensus 258 ~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDp 337 (438)
T PTZ00361 258 LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDP 337 (438)
T ss_pred cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhH
Confidence 99999999999999999999999999999999887543322 234667889999998887788999999999999999
Q ss_pred hhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 001162 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEP 1075 (1134)
Q Consensus 996 allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 1075 (1134)
+++||||||+.|+|++|+.++|.+||+.+++++.+..+++++.++..++||+|+||+++|.+|++.|+++.
T Consensus 338 aLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~--------- 408 (438)
T PTZ00361 338 ALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER--------- 408 (438)
T ss_pred HhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999998762
Q ss_pred CCcccccHHHHHHHHhhc
Q 001162 1076 GKMPVITDALLKSIASKA 1093 (1134)
Q Consensus 1076 ~~~~~it~e~l~~al~~~ 1093 (1134)
+..||.+||..|++++
T Consensus 409 --r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 409 --RMKVTQADFRKAKEKV 424 (438)
T ss_pred --CCccCHHHHHHHHHHH
Confidence 3579999999999875
No 26
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-37 Score=347.06 Aligned_cols=274 Identities=32% Similarity=0.519 Sum_probs=249.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
..+.|+++.|++.+|+.+.+.+.+|...+.+|..+. .+.+++||+||||+|||+|++|+|.++++.|+.++++.|.++|
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~ 226 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKY 226 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhc
Confidence 358999999999999999999999999999998764 4566999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc--ccccEEEEEecCCCCccchh
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--VLTGVFVFAATSRPDLLDAA 996 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~--~~~~v~vIatTn~p~~ld~a 996 (1134)
+|++++.+|.+|.-|+..+|+|+||||+|+++.+|.........|+..++|-++++.. ..++|+||||||+|+.+|.+
T Consensus 227 ~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea 306 (428)
T KOG0740|consen 227 VGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEA 306 (428)
T ss_pred cChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHH
Confidence 9999999999999999999999999999999999977778888999999999998865 45689999999999999999
Q ss_pred hcCcCcccceeecCCCCHHHHHHHHHHHHccCCC-CCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHh--ccCCC
Q 001162 997 LLRPGRLDRLLFCDFPSPRERLDILKVISRKLPL-ADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILN--NIDSN 1073 (1134)
Q Consensus 997 llrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~-~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~--~~~~~ 1073 (1134)
++| ||.+++++|+|+++.|..+|+.++++.+. ..+.|++.|++.|+||+|+||.++|.+|++.-++.... .....
T Consensus 307 ~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~~~ 384 (428)
T KOG0740|consen 307 ARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLEFI 384 (428)
T ss_pred HHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhhhc
Confidence 999 99999999999999999999999987733 36688999999999999999999999999987776554 23334
Q ss_pred CCCCcccccHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhcc
Q 001162 1074 EPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDS 1115 (1134)
Q Consensus 1074 ~~~~~~~it~e~l~~al~~~~ps~~~~~~~~~~~~~~~f~~~ 1115 (1134)
.....+.++..|+..++...+|+++...+.+|.+|+..|...
T Consensus 385 ~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~~ 426 (428)
T KOG0740|consen 385 DADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGSS 426 (428)
T ss_pred chhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhccc
Confidence 456778999999999999999999999999999999999653
No 27
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-36 Score=357.56 Aligned_cols=242 Identities=38% Similarity=0.663 Sum_probs=226.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
..+.|.|+.|.+++|+.+.+.+. +++.|..|...|.+.|.|+||+||||||||+||+++|.+.+.||+++++++++..|
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVd-fLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVD-FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHH-HHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 35889999999999999999988 47889999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCC---CCcchhhHHHhHhhhcccccccccEEEEEecCCCCccch
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD---NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~---~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~ 995 (1134)
+|-....+|++|.+|++.+|||+||||+|++...|+.+ .+...+..+||+|.+|||+....+|+|+++||||+-+||
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ 303 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDP 303 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchH
Confidence 99999999999999999999999999999999998754 233344689999999999998899999999999999999
Q ss_pred hhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 001162 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEP 1075 (1134)
Q Consensus 996 allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 1075 (1134)
||+||||||+.|.++.||...|.+|++.++++.++..++|+..+|+.|.||+|+|+.+++++|++.|.++.
T Consensus 304 ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n--------- 374 (596)
T COG0465 304 ALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRN--------- 374 (596)
T ss_pred hhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999998873
Q ss_pred CCcccccHHHHHHHHhh
Q 001162 1076 GKMPVITDALLKSIASK 1092 (1134)
Q Consensus 1076 ~~~~~it~e~l~~al~~ 1092 (1134)
+..|++.||.+|..+
T Consensus 375 --~~~i~~~~i~ea~dr 389 (596)
T COG0465 375 --KKEITMRDIEEAIDR 389 (596)
T ss_pred --CeeEeccchHHHHHH
Confidence 356899999998875
No 28
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=2.7e-34 Score=347.01 Aligned_cols=244 Identities=39% Similarity=0.672 Sum_probs=224.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
+.+.|++++|++++++.+.+.+.+ +++++.|.+.+..++.|+|||||||||||++|+++|++++.+|+.++++++.+.|
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 128 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 128 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHH
Confidence 458999999999999999998886 7888999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCC---CcchhhHHHhHhhhcccccccccEEEEEecCCCCccch
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~---~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~ 995 (1134)
.|.++..++.+|+.|+...||||||||+|.++.+++.+. .....+++++||.+||++...++++||+|||+|+.+|+
T Consensus 129 ~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~ 208 (495)
T TIGR01241 129 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDP 208 (495)
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCH
Confidence 999999999999999999999999999999998876532 23456889999999999988889999999999999999
Q ss_pred hhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 001162 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEP 1075 (1134)
Q Consensus 996 allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 1075 (1134)
+++||||||+.++|+.|+.++|.+||+.++++.++..++++..+|..+.||+|+||+++|++|++.|+++
T Consensus 209 al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~---------- 278 (495)
T TIGR01241 209 ALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARK---------- 278 (495)
T ss_pred HHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc----------
Confidence 9999999999999999999999999999999888878899999999999999999999999998887654
Q ss_pred CCcccccHHHHHHHHhhcC
Q 001162 1076 GKMPVITDALLKSIASKAR 1094 (1134)
Q Consensus 1076 ~~~~~it~e~l~~al~~~~ 1094 (1134)
....|+.+||..|+....
T Consensus 279 -~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 279 -NKTEITMNDIEEAIDRVI 296 (495)
T ss_pred -CCCCCCHHHHHHHHHHHh
Confidence 234799999999998753
No 29
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-35 Score=326.61 Aligned_cols=260 Identities=36% Similarity=0.599 Sum_probs=224.1
Q ss_pred CCChhH-HHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCc-EEEEeCcccchhcccccH
Q 001162 846 VGGLTD-IQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-FISVKGPELLNKYIGASE 923 (1134)
Q Consensus 846 i~gl~~-~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~-~i~i~~~el~~~~~G~se 923 (1134)
|||++. .-...+++......-|++..+.|...-+|+|||||||||||++||-+...++++ --.+|++++++||+|++|
T Consensus 223 IGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE 302 (744)
T KOG0741|consen 223 IGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESE 302 (744)
T ss_pred cccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccH
Confidence 567664 344455666666667889999999999999999999999999999999999753 456899999999999999
Q ss_pred HHHHHHHHHhhh----cC----CeEEEEcCcccccCCCCC--CCCcchhhHHHhHhhhcccccccccEEEEEecCCCCcc
Q 001162 924 QAVRDIFSKATA----AA----PCLLFFDEFDSIAPKRGH--DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL 993 (1134)
Q Consensus 924 ~~v~~lf~~A~~----~~----P~VLfiDEid~l~~~r~~--~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~l 993 (1134)
.++|.+|..|.. .. --||+|||||+++..||+ +++++++.++||||.-|||++...+++|||-|||.|+|
T Consensus 303 ~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlI 382 (744)
T KOG0741|consen 303 ENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLI 382 (744)
T ss_pred HHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhH
Confidence 999999998832 11 139999999999999986 46899999999999999999999999999999999999
Q ss_pred chhhcCcCcccceeecCCCCHHHHHHHHHHHHccC----CCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhc
Q 001162 994 DAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL----PLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNN 1069 (1134)
Q Consensus 994 d~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~----~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~ 1069 (1134)
|.||+|||||.-.+++.+||+..|++|++.+.+++ .+..|+|+.+||+.|..||||+|..+++.|..-|+.|....
T Consensus 383 DEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~ 462 (744)
T KOG0741|consen 383 DEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKA 462 (744)
T ss_pred HHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999877655 46789999999999999999999999999999999998865
Q ss_pred cCC----CCCCCcccccHHHHHHHHhhcCCC--CcHHHHHHH
Q 001162 1070 IDS----NEPGKMPVITDALLKSIASKARPS--VSEAEKLRL 1105 (1134)
Q Consensus 1070 ~~~----~~~~~~~~it~e~l~~al~~~~ps--~~~~~~~~~ 1105 (1134)
... ......-.|+.+||..|+..++|. ++++++.++
T Consensus 463 ~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~ 504 (744)
T KOG0741|consen 463 GGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERF 504 (744)
T ss_pred CcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHH
Confidence 411 122344579999999999999996 566666554
No 30
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=7.8e-34 Score=335.20 Aligned_cols=259 Identities=36% Similarity=0.599 Sum_probs=218.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCc----------EEE
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR----------FIS 908 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~----------~i~ 908 (1134)
+.+.|++|+|++..++.+++.+.+|+.++++|...++.+++|+|||||||||||++|+++|++++.+ |+.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 4589999999999999999999999999999999999999999999999999999999999998644 778
Q ss_pred EeCcccchhcccccHHHHHHHHHHhhhc----CCeEEEEcCcccccCCCCCC-CCcchhhHHHhHhhhcccccccccEEE
Q 001162 909 VKGPELLNKYIGASEQAVRDIFSKATAA----APCLLFFDEFDSIAPKRGHD-NTGVTDRVVNQFLTELDGVEVLTGVFV 983 (1134)
Q Consensus 909 i~~~el~~~~~G~se~~v~~lf~~A~~~----~P~VLfiDEid~l~~~r~~~-~~~~~~rv~~~lL~~ld~~~~~~~v~v 983 (1134)
+++++++++|.|++++.++.+|+.|+.. .|+||||||+|+++.+|+.+ +.....+++++||.+||++...++++|
T Consensus 257 v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViV 336 (512)
T TIGR03689 257 IKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIV 336 (512)
T ss_pred ccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEE
Confidence 8889999999999999999999998763 69999999999999988654 344556889999999999998889999
Q ss_pred EEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHcc-CCCC---------CcccHHHHHH------------
Q 001162 984 FAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRK-LPLA---------DDVDLEAIAH------------ 1041 (1134)
Q Consensus 984 IatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~-~~~~---------~~vd~~~La~------------ 1041 (1134)
|+|||+++.||||++||||||..|+|++|+.++|.+||+.++.. +++. ...+...+++
T Consensus 337 I~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a~~~~ 416 (512)
T TIGR03689 337 IGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYATSEE 416 (512)
T ss_pred EeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999998764 3431 1122222222
Q ss_pred -----------------hccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhh-------cCCCC
Q 001162 1042 -----------------MTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASK-------ARPSV 1097 (1134)
Q Consensus 1042 -----------------~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~-------~~ps~ 1097 (1134)
.++.+||++|+++|..|...|+.+.+.. ...-|+.+||..|+.. ..+..
T Consensus 417 ~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~-------~~~~~~~~~l~~a~~~e~~~~~~~~~~~ 489 (512)
T TIGR03689 417 NRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITG-------GQVGLRIEHLLAAVLDEFRESEDLPNTT 489 (512)
T ss_pred cceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhc-------CCcCcCHHHHHHHHHHhhcccccCCCCC
Confidence 2567889999999999999999887742 2247999999999863 23344
Q ss_pred cHHHHHH
Q 001162 1098 SEAEKLR 1104 (1134)
Q Consensus 1098 ~~~~~~~ 1104 (1134)
.++++.+
T Consensus 490 ~~~~w~~ 496 (512)
T TIGR03689 490 NPDDWAR 496 (512)
T ss_pred CHHHHhh
Confidence 5555543
No 31
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-35 Score=311.60 Aligned_cols=243 Identities=36% Similarity=0.635 Sum_probs=222.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcc
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~ 919 (1134)
...|+.++|+..+...+++.++.|+..+++|.+.++.+|.+++||||||||||.+|+++|..+|.+|+.+..+++.++|+
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyi 207 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYI 207 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCc---chhhHHHhHhhhcccccccccEEEEEecCCCCccchh
Q 001162 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAA 996 (1134)
Q Consensus 920 G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~---~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~a 996 (1134)
|++.+.+|+.|..|+...|||||+||||++.++|....+. ...+.+-+|+.+||++....+|-+|.|||+|+.|||+
T Consensus 208 GEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpa 287 (388)
T KOG0651|consen 208 GESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPA 287 (388)
T ss_pred ccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchh
Confidence 9999999999999999999999999999999888433222 2335566788899999999999999999999999999
Q ss_pred hcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 001162 997 LLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPG 1076 (1134)
Q Consensus 997 llrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 1076 (1134)
|+||||+|+.++.|.|+...|..|++.....+....++|.+++.+..+||.|+|+++.|.+|.+-|+.+..
T Consensus 288 LlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~--------- 358 (388)
T KOG0651|consen 288 LLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEER--------- 358 (388)
T ss_pred hcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhh---------
Confidence 99999999999999999999999999998888888899999999999999999999999999988876532
Q ss_pred CcccccHHHHHHHHhhc
Q 001162 1077 KMPVITDALLKSIASKA 1093 (1134)
Q Consensus 1077 ~~~~it~e~l~~al~~~ 1093 (1134)
..+-.|++..++.+.
T Consensus 359 --~~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 359 --DEVLHEDFMKLVRKQ 373 (388)
T ss_pred --HHHhHHHHHHHHHHH
Confidence 346778888887654
No 32
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-34 Score=329.71 Aligned_cols=223 Identities=44% Similarity=0.731 Sum_probs=215.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcc
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~ 919 (1134)
+.. ++++|+......+++.+++|+.++..+...+.++++++|+|||||||||.+++++|++.++.++.+++++++++|.
T Consensus 181 ~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~ 259 (693)
T KOG0730|consen 181 EVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFP 259 (693)
T ss_pred ccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcc
Confidence 355 7899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhhhcC-CeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhc
Q 001162 920 GASEQAVRDIFSKATAAA-PCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALL 998 (1134)
Q Consensus 920 G~se~~v~~lf~~A~~~~-P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~all 998 (1134)
|+++..+|..|+.|...+ |++|||||+|+++|+|..... +..|++.++++.||+.....+++|+++||+|+.||++++
T Consensus 260 gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alR 338 (693)
T KOG0730|consen 260 GETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALR 338 (693)
T ss_pred cchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhh
Confidence 999999999999999999 999999999999999987665 789999999999999999999999999999999999999
Q ss_pred CcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHH
Q 001162 999 RPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHE 1065 (1134)
Q Consensus 999 rpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~ 1065 (1134)
| ||||+.+.+..|+..+|.+|++.+.++++..+++++..+|..++||+|+|+.++|++|++.++++
T Consensus 339 R-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~ 404 (693)
T KOG0730|consen 339 R-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR 404 (693)
T ss_pred c-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh
Confidence 9 99999999999999999999999999999998899999999999999999999999999999987
No 33
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.9e-33 Score=327.46 Aligned_cols=244 Identities=45% Similarity=0.711 Sum_probs=223.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
+.+.|++++|+++.++.+.+.+..|+.+++.|...|..++.|+|||||||||||++|+++|++++.+|+.+.++++..+|
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~ 196 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKY 196 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCc---chhhHHHhHhhhcccccccccEEEEEecCCCCccch
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~---~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~ 995 (1134)
.|+....++.+|+.|+...|+||||||+|.++.++..+..+ ...+.+.+++.+|+++...+++.||+|||+++.+|+
T Consensus 197 ~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~ 276 (364)
T TIGR01242 197 IGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDP 276 (364)
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCCh
Confidence 99999999999999999999999999999998877543322 234667888888888777788999999999999999
Q ss_pred hhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 001162 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEP 1075 (1134)
Q Consensus 996 allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 1075 (1134)
+++||||||+.++|+.|+.++|.+||+.++++..+..+++++.+++.++||+|+||+++|++|++.|+++
T Consensus 277 al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~---------- 346 (364)
T TIGR01242 277 ALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIRE---------- 346 (364)
T ss_pred hhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh----------
Confidence 9999999999999999999999999999999988888899999999999999999999999999999875
Q ss_pred CCcccccHHHHHHHHhhc
Q 001162 1076 GKMPVITDALLKSIASKA 1093 (1134)
Q Consensus 1076 ~~~~~it~e~l~~al~~~ 1093 (1134)
....|+.+||..|+..+
T Consensus 347 -~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 347 -ERDYVTMDDFIKAVEKV 363 (364)
T ss_pred -CCCccCHHHHHHHHHHh
Confidence 23479999999998764
No 34
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=4.5e-33 Score=339.44 Aligned_cols=242 Identities=39% Similarity=0.661 Sum_probs=221.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcc
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~ 919 (1134)
...|+|++|++++++.+.+.+.. ++.++.|...+...+.|+||+||||||||++|+++|.+++.+|+.++++++...|.
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~ 257 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFV 257 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhh
Confidence 47899999999999999998775 67788888889899999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCC---CcchhhHHHhHhhhcccccccccEEEEEecCCCCccchh
Q 001162 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAA 996 (1134)
Q Consensus 920 G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~---~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~a 996 (1134)
|.....++.+|+.|+...||||||||+|.+...|+.+. ......++++||.+||++....+++||+|||+|+.+|++
T Consensus 258 g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~A 337 (638)
T CHL00176 258 GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAA 337 (638)
T ss_pred hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhh
Confidence 99999999999999999999999999999998776432 233457899999999998888899999999999999999
Q ss_pred hcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 001162 997 LLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPG 1076 (1134)
Q Consensus 997 llrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 1076 (1134)
++||||||+.+.|++|+.++|.+||+.++++..+..++++..+|+.+.||+|+||+++|++|++.|.++
T Consensus 338 LlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~----------- 406 (638)
T CHL00176 338 LLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR----------- 406 (638)
T ss_pred hhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh-----------
Confidence 999999999999999999999999999999888888999999999999999999999999999887654
Q ss_pred CcccccHHHHHHHHhhc
Q 001162 1077 KMPVITDALLKSIASKA 1093 (1134)
Q Consensus 1077 ~~~~it~e~l~~al~~~ 1093 (1134)
+...||.+||..|+..+
T Consensus 407 ~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 407 KKATITMKEIDTAIDRV 423 (638)
T ss_pred CCCCcCHHHHHHHHHHH
Confidence 23579999999999865
No 35
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-33 Score=343.40 Aligned_cols=259 Identities=35% Similarity=0.584 Sum_probs=231.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc-----CCcEEEEeCccc
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPEL 914 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~-----~~~~i~i~~~el 914 (1134)
.++|+++||++.+...|++.+..|+.|++.|...++.|++|+||+||||||||+.|+++|..+ +..|+.-++++.
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ 340 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADC 340 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchh
Confidence 579999999999999999999999999999999999999999999999999999999999988 467888899999
Q ss_pred chhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccc
Q 001162 915 LNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLD 994 (1134)
Q Consensus 915 ~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld 994 (1134)
+++|+|+.|+.++.+|+.|+...|+|+||||||-|+|.|..-+...+..++.+||..|||+...+.|+||||||||+.+|
T Consensus 341 lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~d 420 (1080)
T KOG0732|consen 341 LSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAID 420 (1080)
T ss_pred hccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccc
Confidence 99999999999999999999999999999999999999988777888899999999999999999999999999999999
Q ss_pred hhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCC
Q 001162 995 AALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN 1073 (1134)
Q Consensus 995 ~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~ 1073 (1134)
||++||||||+.++|++|+.+.|.+|+..+.++..-. ...-+..||..+.||.|+||+++|.+|++.++++..-.....
T Consensus 421 paLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s 500 (1080)
T KOG0732|consen 421 PALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSS 500 (1080)
T ss_pred hhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeecc
Confidence 9999999999999999999999999999988776422 344578899999999999999999999999998865433221
Q ss_pred C-----CCCcccccHHHHHHHHhhcCCCCc
Q 001162 1074 E-----PGKMPVITDALLKSIASKARPSVS 1098 (1134)
Q Consensus 1074 ~-----~~~~~~it~e~l~~al~~~~ps~~ 1098 (1134)
. ......++..||..|+...-|+..
T Consensus 501 ~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~ 530 (1080)
T KOG0732|consen 501 SDKLLIDVALIKVEVRDFVEAMSRITPSSR 530 (1080)
T ss_pred cccccccchhhhhhhHhhhhhhhccCCCCC
Confidence 1 112234788888888877655443
No 36
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=1e-31 Score=337.68 Aligned_cols=455 Identities=17% Similarity=0.236 Sum_probs=310.8
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc----eeeEEEEE
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFV 627 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~----~~~~~~~v 627 (1134)
+++.+.|.+..++.+++.+ . .....++||+||||||||++++++|+.+..... ....++.+
T Consensus 180 ~l~~~igr~~ei~~~~~~L---~------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVL---C------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred CCCcccCcHHHHHHHHHHH---h------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 3557788988888766543 1 112367999999999999999999998843211 13678888
Q ss_pred eccccc--ccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccccc
Q 001162 628 CCSRLS--LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC 705 (1134)
Q Consensus 628 ~~s~l~--~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~ 705 (1134)
+++.+. ..+.+++++.++.+|+++.++.|.||||||+|.|++.....+++ . ...+.|...+..
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~---~---~~~~~L~~~l~~--------- 309 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS---M---DASNLLKPALSS--------- 309 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc---H---HHHHHHHHHHhC---------
Confidence 888876 45678899999999999988889999999999998643221211 1 223444444331
Q ss_pred CCCcEEEEEecCCCC-----CCChhhccCCCccccccCCCCCHHHHHHHHHHHhhh----cccCCCHHHHHHHhhhcCCC
Q 001162 706 GIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDGY 776 (1134)
Q Consensus 706 ~~~~V~vIattn~~~-----~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~----~~l~~~~~~l~~la~~teG~ 776 (1134)
+.+.+|++||..+ ..|++|.| ||. .++++.|+.+++.+||+..... +++.++++++..++..+..|
T Consensus 310 --g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ry 384 (731)
T TIGR02639 310 --GKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARY 384 (731)
T ss_pred --CCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcc
Confidence 2589999999743 46899999 997 7999999999999999976543 45678999999999988777
Q ss_pred Ch-----hhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhccccceecccccccc----CCCCCCCCCCC
Q 001162 777 DA-----YDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSA----EGGRSGWDDVG 847 (1134)
Q Consensus 777 s~-----~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~----~~~~~~~~~i~ 847 (1134)
-+ .-...+++.|+.....+. . ......++.+|+..++..++......+..... .....-...|.
T Consensus 385 i~~r~~P~kai~lld~a~a~~~~~~--~-----~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~ 457 (731)
T TIGR02639 385 INDRFLPDKAIDVIDEAGASFRLRP--K-----AKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIF 457 (731)
T ss_pred cccccCCHHHHHHHHHhhhhhhcCc--c-----cccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhccee
Confidence 54 334566777664332221 0 01234588899998887764221111110000 00011234578
Q ss_pred ChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccch-----------
Q 001162 848 GLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN----------- 916 (1134)
Q Consensus 848 gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~----------- 916 (1134)
|++++++.+...+..... .-..+.+|...+||+||||||||++|+++|+.++.+++.++++++..
T Consensus 458 GQ~~ai~~l~~~i~~~~~----g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~ 533 (731)
T TIGR02639 458 GQDEAIDSLVSSIKRSRA----GLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAP 533 (731)
T ss_pred CcHHHHHHHHHHHHHHhc----CCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCC
Confidence 999988888877663210 00112234456899999999999999999999999999999988743
Q ss_pred -hcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc---------ccccEEEEEe
Q 001162 917 -KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---------VLTGVFVFAA 986 (1134)
Q Consensus 917 -~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~---------~~~~v~vIat 986 (1134)
.|+|..+ ...+.+..+....+||||||+|.+. ..+.+.|++.||.-. ...+++||+|
T Consensus 534 ~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka~-----------~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~T 600 (731)
T TIGR02639 534 PGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKAH-----------PDIYNILLQVMDYATLTDNNGRKADFRNVILIMT 600 (731)
T ss_pred CCCcccch--hhHHHHHHHhCCCeEEEEechhhcC-----------HHHHHHHHHhhccCeeecCCCcccCCCCCEEEEC
Confidence 2344332 2234444556677899999999883 458888998887531 1346888889
Q ss_pred cCCCC-------------------------ccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccC-------CCCCcc
Q 001162 987 TSRPD-------------------------LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL-------PLADDV 1034 (1134)
Q Consensus 987 Tn~p~-------------------------~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~-------~~~~~v 1034 (1134)
||... .+.|.++. |||.++.|.+.+.++..+|++..++++ ++.-.+
T Consensus 601 sn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i 678 (731)
T TIGR02639 601 SNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLEL 678 (731)
T ss_pred CCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEe
Confidence 88632 14566766 999999999999999999998876532 222222
Q ss_pred c---HHHHHHh--ccCCcHHHHHHHHHHHHHHHHHHHH
Q 001162 1035 D---LEAIAHM--TEGFSGADLQALLSDAQLSAVHEIL 1067 (1134)
Q Consensus 1035 d---~~~La~~--t~g~sg~dl~~l~~~A~~~a~~~~~ 1067 (1134)
+ .+.|+.. ...+..+.|+.+++.....++-+.+
T Consensus 679 ~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~ 716 (731)
T TIGR02639 679 TDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEI 716 (731)
T ss_pred CHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHH
Confidence 2 4445543 3446678888888877776654433
No 37
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=1.4e-32 Score=347.29 Aligned_cols=209 Identities=19% Similarity=0.274 Sum_probs=178.3
Q ss_pred hhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc----------cc----------------
Q 001162 867 PNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY----------IG---------------- 920 (1134)
Q Consensus 867 ~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~----------~G---------------- 920 (1134)
.....+.|..+++|+||+||||||||+||+|+|.+++++|+.|++++++++| +|
T Consensus 1619 kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~ 1698 (2281)
T CHL00206 1619 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLD 1698 (2281)
T ss_pred cCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccc
Confidence 4455667888999999999999999999999999999999999999998765 22
Q ss_pred ---------------ccHH--HHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc---cccc
Q 001162 921 ---------------ASEQ--AVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---VLTG 980 (1134)
Q Consensus 921 ---------------~se~--~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~---~~~~ 980 (1134)
.++. .++.+|+.|++.+||||||||||+++.+. . ....+++|+.+||+.. ...+
T Consensus 1699 ~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d---s---~~ltL~qLLneLDg~~~~~s~~~ 1772 (2281)
T CHL00206 1699 TELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE---S---NYLSLGLLVNSLSRDCERCSTRN 1772 (2281)
T ss_pred hhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc---c---ceehHHHHHHHhccccccCCCCC
Confidence 2223 38999999999999999999999997651 1 1224899999999763 3568
Q ss_pred EEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHH--ccCCCCC-cccHHHHHHhccCCcHHHHHHHHHH
Q 001162 981 VFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVIS--RKLPLAD-DVDLEAIAHMTEGFSGADLQALLSD 1057 (1134)
Q Consensus 981 v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~--~~~~~~~-~vd~~~La~~t~g~sg~dl~~l~~~ 1057 (1134)
|+||||||+|+.|||||+||||||+.|+++.|+..+|.+++..++ +++.+.. .+|++.+|+.|.||+||||+++|++
T Consensus 1773 VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNE 1852 (2281)
T CHL00206 1773 ILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNE 1852 (2281)
T ss_pred EEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988653 4555553 3689999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhh
Q 001162 1058 AQLSAVHEILNNIDSNEPGKMPVITDALLKSIASK 1092 (1134)
Q Consensus 1058 A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~ 1092 (1134)
|++.|+++ ++..|+.+++..|+.+
T Consensus 1853 AaliAirq-----------~ks~Id~~~I~~Al~R 1876 (2281)
T CHL00206 1853 ALSISITQ-----------KKSIIDTNTIRSALHR 1876 (2281)
T ss_pred HHHHHHHc-----------CCCccCHHHHHHHHHH
Confidence 99999886 2357899999999874
No 38
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=4.2e-31 Score=292.72 Aligned_cols=217 Identities=19% Similarity=0.288 Sum_probs=172.8
Q ss_pred CCCCC-CChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhccc
Q 001162 842 GWDDV-GGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIG 920 (1134)
Q Consensus 842 ~~~~i-~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~G 920 (1134)
.|+++ +|+.-.+..+........+ ..+...++++|.+++||||||||||++|+++|+++|.+|+.+++++|.++|+|
T Consensus 113 ~f~~~~g~~~~~p~f~dk~~~hi~k--n~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 113 SFDNLVGGYYIAPAFMDKVAVHIAK--NFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred chhhhcCccccCHHHHHHHHHHHHh--hhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 45555 6666555555544432221 12233667899999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhhh-----cCCeEEEEcCcccccCCCCCCCCcchhhHH-HhHhhhcccc------------cccccEE
Q 001162 921 ASEQAVRDIFSKATA-----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVV-NQFLTELDGV------------EVLTGVF 982 (1134)
Q Consensus 921 ~se~~v~~lf~~A~~-----~~P~VLfiDEid~l~~~r~~~~~~~~~rv~-~~lL~~ld~~------------~~~~~v~ 982 (1134)
++|+.+|++|+.|+. .+||||||||||+++++|+..+..+..+++ .+|+++||+. +...+|+
T Consensus 191 EsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~ 270 (413)
T PLN00020 191 EPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVP 270 (413)
T ss_pred cHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCce
Confidence 999999999999975 579999999999999999876666666776 7999998863 3456799
Q ss_pred EEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccC----CcHHHHHHHHHHH
Q 001162 983 VFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEG----FSGADLQALLSDA 1058 (1134)
Q Consensus 983 vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g----~sg~dl~~l~~~A 1058 (1134)
||+|||+|+.|||+|+||||||+.+ ..|+.++|.+||+.++++.+++ .+|+..|+..+.| |.|+--..+..++
T Consensus 271 VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~ 347 (413)
T PLN00020 271 IIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDE 347 (413)
T ss_pred EEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHH
Confidence 9999999999999999999999975 4899999999999999998775 5677777777655 4454434444444
Q ss_pred HHHHH
Q 001162 1059 QLSAV 1063 (1134)
Q Consensus 1059 ~~~a~ 1063 (1134)
....+
T Consensus 348 v~~~i 352 (413)
T PLN00020 348 VRKWI 352 (413)
T ss_pred HHHHH
Confidence 44333
No 39
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.97 E-value=2.5e-30 Score=320.28 Aligned_cols=456 Identities=15% Similarity=0.210 Sum_probs=303.7
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCC----ceeeEEEEEe
Q 001162 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVFVC 628 (1134)
Q Consensus 553 ~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~----~~~~~~~~v~ 628 (1134)
+..+.|.+..+..+++.+.. ..+.++||+||||||||++++.+|..+.... .....++.++
T Consensus 185 ~~~liGR~~ei~~~i~iL~r---------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCR---------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhc---------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 45688899999888875422 1235689999999999999999998763221 0123444555
Q ss_pred ccccc--ccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccC
Q 001162 629 CSRLS--LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCG 706 (1134)
Q Consensus 629 ~s~l~--~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~ 706 (1134)
...+. ..+.+..+..++.+|..+....++||||||+|.|++......+ . ..+.+.|...+..
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g---~---~d~~nlLkp~L~~---------- 313 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG---Q---VDAANLIKPLLSS---------- 313 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc---H---HHHHHHHHHHHhC----------
Confidence 55444 3456788888999999888778899999999999864322111 1 1334444444321
Q ss_pred CCcEEEEEecCCCC-----CCChhhccCCCccccccCCCCCHHHHHHHHHHHhh----hcccCCCHHHHHHHhhhcCC--
Q 001162 707 IGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ----RRSLECSDEILLDVASKCDG-- 775 (1134)
Q Consensus 707 ~~~V~vIattn~~~-----~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~----~~~l~~~~~~l~~la~~teG-- 775 (1134)
+.+.+|++|+..+ ..|++|.| ||. .|.++.|+.+++.+||+.+.. .+++.++++++..++..+..
T Consensus 314 -g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi 389 (758)
T PRK11034 314 -GKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYI 389 (758)
T ss_pred -CCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccc
Confidence 2589999999865 46999999 996 899999999999999996543 34567889988877766554
Q ss_pred ---CChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhccccceeccccccccC----CCCCCCCCCCC
Q 001162 776 ---YDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAE----GGRSGWDDVGG 848 (1134)
Q Consensus 776 ---~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~~----~~~~~~~~i~g 848 (1134)
+.|.....+++.|+... |..+.. .....++.+|+.+.+...+......+...... ....--..|.|
T Consensus 390 ~~r~lPdKaidlldea~a~~--~~~~~~-----~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViG 462 (758)
T PRK11034 390 NDRHLPDKAIDVIDEAGARA--RLMPVS-----KRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFG 462 (758)
T ss_pred cCccChHHHHHHHHHHHHhh--ccCccc-----ccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeC
Confidence 44556778888887543 211110 11235777888877766553221111111000 00011235789
Q ss_pred hhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccch-----hcccccH
Q 001162 849 LTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-----KYIGASE 923 (1134)
Q Consensus 849 l~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~-----~~~G~se 923 (1134)
++++++.+.+.+...... + ..+.+|..++||+||||||||++|+++|..++.+|+.++++++.. +++|...
T Consensus 463 Q~~ai~~l~~~i~~~~~g--l--~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~ 538 (758)
T PRK11034 463 QDKAIEALTEAIKMSRAG--L--GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPP 538 (758)
T ss_pred cHHHHHHHHHHHHHHhcc--c--cCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCC
Confidence 999999999988642110 0 011244567999999999999999999999999999999988643 3333221
Q ss_pred H-----HHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc---------ccccEEEEEecCC
Q 001162 924 Q-----AVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---------VLTGVFVFAATSR 989 (1134)
Q Consensus 924 ~-----~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~---------~~~~v~vIatTn~ 989 (1134)
. .-..+.+..+....+||||||||++ ...+.+.|++.||.-. ...+++||+|||.
T Consensus 539 gyvg~~~~g~L~~~v~~~p~sVlllDEieka-----------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~ 607 (758)
T PRK11034 539 GYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_pred CcccccccchHHHHHHhCCCcEEEeccHhhh-----------hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCc
Confidence 1 1112333335556689999999998 3468889998887321 1246889999993
Q ss_pred C-------------------------CccchhhcCcCcccceeecCCCCHHHHHHHHHHHHc-------cCCCCCccc--
Q 001162 990 P-------------------------DLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISR-------KLPLADDVD-- 1035 (1134)
Q Consensus 990 p-------------------------~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~-------~~~~~~~vd-- 1035 (1134)
- ..+.|.++. |+|.++.|++.+.++..+|+...+. ..++.-.++
T Consensus 608 g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~ 685 (758)
T PRK11034 608 GVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQE 685 (758)
T ss_pred CHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHH
Confidence 2 115577777 9999999999999999999986653 224443333
Q ss_pred -HHHHHHh--ccCCcHHHHHHHHHHHHHHHHHHHH
Q 001162 1036 -LEAIAHM--TEGFSGADLQALLSDAQLSAVHEIL 1067 (1134)
Q Consensus 1036 -~~~La~~--t~g~sg~dl~~l~~~A~~~a~~~~~ 1067 (1134)
.+.|+.. ...|..+.|+.+++.-....+.+.+
T Consensus 686 ~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~i 720 (758)
T PRK11034 686 ARDWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_pred HHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 3444432 2335568888888877776665443
No 40
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=1.9e-31 Score=329.33 Aligned_cols=244 Identities=37% Similarity=0.653 Sum_probs=221.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcc
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~ 919 (1134)
...|+++.|.+..++.+.+.+.+ ...+..+...+...+.|+||+||||||||++|+++|++++.+|+.++++++...|.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 36789999999999999998886 45566677777778889999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCC---CcchhhHHHhHhhhcccccccccEEEEEecCCCCccchh
Q 001162 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAA 996 (1134)
Q Consensus 920 G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~---~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~a 996 (1134)
|..+..++.+|..|+...||||||||+|.++.+|+.+. .....++++++|.+||++...++++||+|||+|+.||++
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 99999999999999999999999999999998876532 233457899999999999988999999999999999999
Q ss_pred hcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 001162 997 LLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPG 1076 (1134)
Q Consensus 997 llrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 1076 (1134)
++||||||+.++|+.|+.++|.+||+.++++.++..++++..+|+.+.||||+||.++|++|+..|+++
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~----------- 375 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG----------- 375 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc-----------
Confidence 999999999999999999999999999999999989999999999999999999999999999998764
Q ss_pred CcccccHHHHHHHHhhcCC
Q 001162 1077 KMPVITDALLKSIASKARP 1095 (1134)
Q Consensus 1077 ~~~~it~e~l~~al~~~~p 1095 (1134)
+...|+.+||..|+..+.+
T Consensus 376 ~~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 376 NKRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred CCCcccHHHHHHHHHHHhc
Confidence 3457999999999876544
No 41
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=4.3e-31 Score=333.13 Aligned_cols=259 Identities=43% Similarity=0.698 Sum_probs=237.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
+...|++|+|++++++.+++.+.+++.++++|...++.++.++|||||||||||++|+++|++++.+|+.++++++.++|
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhc
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALL 998 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~all 998 (1134)
.|.++..++.+|+.|....|+||||||+|.++++|+........+++++|++.|+++.....++||++||+|+.+|++++
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~ 332 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALR 332 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHh
Confidence 99999999999999999999999999999999988766666678999999999999888888999999999999999999
Q ss_pred CcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCC-----
Q 001162 999 RPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN----- 1073 (1134)
Q Consensus 999 rpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~----- 1073 (1134)
|+|||+..+.++.|+.++|.+||+.+.+.+.+..+++++.++..++||+|+|+.++|++|++.++++.+......
T Consensus 333 r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~ 412 (733)
T TIGR01243 333 RPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEE 412 (733)
T ss_pred CchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 999999999999999999999999999999888899999999999999999999999999999999876521110
Q ss_pred ---CCCCcccccHHHHHHHHhhcCCCC
Q 001162 1074 ---EPGKMPVITDALLKSIASKARPSV 1097 (1134)
Q Consensus 1074 ---~~~~~~~it~e~l~~al~~~~ps~ 1097 (1134)
.......++.+||..|+...+|+.
T Consensus 413 i~~~~~~~~~v~~~df~~Al~~v~ps~ 439 (733)
T TIGR01243 413 IPAEVLKELKVTMKDFMEALKMVEPSA 439 (733)
T ss_pred ccchhcccccccHHHHHHHHhhccccc
Confidence 011234689999999999998875
No 42
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3e-31 Score=297.93 Aligned_cols=247 Identities=21% Similarity=0.284 Sum_probs=209.3
Q ss_pred cccccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEE
Q 001162 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (1134)
Q Consensus 548 ~~~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v 627 (1134)
....+|+++.|.++++.++-+.+..+. .+..|.++|...|+||||+||||||||+|||++|.+.+ .+|++.
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVefLk---dP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~------VPFF~~ 368 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEFLK---DPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG------VPFFYA 368 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHHhc---CcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC------CCeEec
Confidence 346678999999998877766554444 35679999999999999999999999999999999988 899999
Q ss_pred ecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCC
Q 001162 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1134)
Q Consensus 628 ~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1134)
..+++..-.+|.-.++++++|..|+.++||||||||||.+.+++..... ...++.+++|+..||++....
T Consensus 369 sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~----~y~kqTlNQLLvEmDGF~qNe------ 438 (752)
T KOG0734|consen 369 SGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQ----HYAKQTLNQLLVEMDGFKQNE------ 438 (752)
T ss_pred cccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHH----HHHHHHHHHHHHHhcCcCcCC------
Confidence 9999998889999999999999999999999999999999876553322 245678888888999987643
Q ss_pred CcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHH
Q 001162 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (1134)
Q Consensus 708 ~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~ 787 (1134)
+|+||++||.++.||++|.|||||+++|.+|.||...|.+||+.++.+..+. .+-++.-||.-|.||+|+||.++++.
T Consensus 439 -GiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~-~~VD~~iiARGT~GFsGAdLaNlVNq 516 (752)
T KOG0734|consen 439 -GIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLD-EDVDPKIIARGTPGFSGADLANLVNQ 516 (752)
T ss_pred -ceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcc-cCCCHhHhccCCCCCchHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999864332 23357789999999999999999999
Q ss_pred HHHHHhcccccCCCccccccccccchhhhHhhhhccccc
Q 001162 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1134)
Q Consensus 788 a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~ 826 (1134)
|+..|... +...+++.+++-|-..+.-.
T Consensus 517 AAlkAa~d-----------ga~~VtM~~LE~akDrIlMG 544 (752)
T KOG0734|consen 517 AALKAAVD-----------GAEMVTMKHLEFAKDRILMG 544 (752)
T ss_pred HHHHHHhc-----------CcccccHHHHhhhhhheeec
Confidence 98887654 33568899988877665443
No 43
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-30 Score=317.04 Aligned_cols=446 Identities=20% Similarity=0.279 Sum_probs=316.5
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
...|.++||++..+..+.+.+.. ...+++.|..+++.||+|+||+||||||||..|+++|..+...... ..+..-..
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~--PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~k-isffmrkg 337 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLL--PLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRK-ISFFMRKG 337 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHh--HhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccc-cchhhhcC
Confidence 46688999999999999886533 3347899999999999999999999999999999999998654433 22333445
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
.+..++++++.+..++.+|++|+.++|+|+|+||||-|++.++.... + ....+...|+.+|+++... ++
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqE-q---ih~SIvSTLLaLmdGldsR-------gq 406 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQE-Q---IHASIVSTLLALMDGLDSR-------GQ 406 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHH-H---hhhhHHHHHHHhccCCCCC-------Cc
Confidence 56667889999999999999999999999999999999987643321 1 2236677788888887653 46
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
|++||+||+++.++|+|+|+|||++.++|+.|+.+.|.+|+..+-.++.-.+....+..+|+.|.||-++||+.+|..|+
T Consensus 407 VvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAa 486 (1080)
T KOG0732|consen 407 VVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAA 486 (1080)
T ss_pred eEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988877777788888999999999999999999999999
Q ss_pred HHHhcccccCC-----CccccccccccchhhhHhhhhccccceeccccc-cccCCCCCCCCCCCChhHHHHHHHHHHhcC
Q 001162 790 HAAVGRYLHSD-----SSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITK-TSAEGGRSGWDDVGGLTDIQNAIKEMIELP 863 (1134)
Q Consensus 790 ~~a~~r~~~~~-----~~~~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~-~~~~~~~~~~~~i~gl~~~k~~l~~~i~~~ 863 (1134)
..++.+-.+.. ..........+...||..|+...+|+..|.... ..|-.. ...-+.+...+-..++..+...
T Consensus 487 l~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~--~~~~ll~~~~~~~~iq~~~~va 564 (1080)
T KOG0732|consen 487 LIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLST--YLKPLLPFQDALEDIQGLMDVA 564 (1080)
T ss_pred hhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCc--ceecccchHHHHHHhhcchhHH
Confidence 99988754321 111122234478899999999999988875332 222111 0111222222222222222111
Q ss_pred CCch------h-HHh------hCCCCCCCceEEEcCCCCchhHHHHHHHHHc-CCcEEEEeCcccchhc-ccccHHHHHH
Q 001162 864 SKFP------N-IFA------QAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-SLRFISVKGPELLNKY-IGASEQAVRD 928 (1134)
Q Consensus 864 ~~~~------~-~~~------~~~~~~~~~vLL~GppGtGKT~lA~alA~~~-~~~~i~i~~~el~~~~-~G~se~~v~~ 928 (1134)
..-. . .+. ...+-....+++.|..|.|-+.+..++-+.+ +.+......+.++..- .+..+..+..
T Consensus 565 ~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~ 644 (1080)
T KOG0732|consen 565 SSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVH 644 (1080)
T ss_pred hhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHH
Confidence 0000 0 001 1112233458889999999999999998766 6777777777766544 5566788999
Q ss_pred HHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceee
Q 001162 929 IFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLF 1008 (1134)
Q Consensus 929 lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~ 1008 (1134)
+|.+|+...|||+||-++|.+.... ...+...++..++.......+..+-+-..-+.-.+ ..+..
T Consensus 645 i~~eaR~~~psi~~ip~~d~w~~~~-------p~s~~~~~~~~l~~~~~~t~i~e~~t~~~~~~~~~--------~~~~t 709 (1080)
T KOG0732|consen 645 IFMEARKTTPSIVFIPNVDEWARVI-------PVSFLEEFLSSLDEKALSTPILELHTWDTSFESVN--------KSVVT 709 (1080)
T ss_pred HHHHHhccCCceeeccchhhhhhcC-------cchhhhcchhcchhhhhccchhhhccccccccccC--------ccccc
Confidence 9999999999999999999886442 23444555555554333333444322221111000 02334
Q ss_pred cCCCCHHHHHHHHHHHHc
Q 001162 1009 CDFPSPRERLDILKVISR 1026 (1134)
Q Consensus 1009 ~~~p~~~er~~Il~~~~~ 1026 (1134)
+..|..+.+...++..++
T Consensus 710 ~~~p~~~s~~~ff~r~I~ 727 (1080)
T KOG0732|consen 710 LSKPSAESTGAFFKRLIR 727 (1080)
T ss_pred cccchhhhhHHHHHHHHH
Confidence 566777777766665543
No 44
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-29 Score=276.27 Aligned_cols=261 Identities=21% Similarity=0.264 Sum_probs=214.9
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
..+.+++.|+.+++.-+.+.+ ++...-+++|..+..|. ++||++||||||||+|||++|.+++ ..|+.|+.
T Consensus 208 ~ikW~DIagl~~AK~lL~EAV--vlPi~mPe~F~GirrPW-kgvLm~GPPGTGKTlLAKAvATEc~------tTFFNVSs 278 (491)
T KOG0738|consen 208 NIKWDDIAGLHEAKKLLKEAV--VLPIWMPEFFKGIRRPW-KGVLMVGPPGTGKTLLAKAVATECG------TTFFNVSS 278 (491)
T ss_pred CcChHhhcchHHHHHHHHHHH--hhhhhhHHHHhhccccc-ceeeeeCCCCCcHHHHHHHHHHhhc------CeEEEech
Confidence 455778889998888777755 33334678888887776 5599999999999999999999998 78899999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
+.+..++.|+.++.++-+|+.|+.++|++|||||||.|+++++. +..++.+.++...|+-.||+....... ...
T Consensus 279 stltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~---s~EHEaSRRvKsELLvQmDG~~~t~e~---~k~ 352 (491)
T KOG0738|consen 279 STLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGG---SSEHEASRRVKSELLVQMDGVQGTLEN---SKV 352 (491)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCC---ccchhHHHHHHHHHHHHhhcccccccc---cee
Confidence 99999999999999999999999999999999999999976543 345567789999999999988754332 224
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
|+|+|+||-|++||.+|+| ||...|++|.|+.+.|..+|+..+..... .++-.+..++..++||+|+||.++|+.|.
T Consensus 353 VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~-~~~~~~~~lae~~eGySGaDI~nvCreAs 429 (491)
T KOG0738|consen 353 VMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVEL-DDPVNLEDLAERSEGYSGADITNVCREAS 429 (491)
T ss_pred EEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccC-CCCccHHHHHHHhcCCChHHHHHHHHHHH
Confidence 8999999999999999999 99999999999999999999988875332 24446899999999999999999999999
Q ss_pred HHHhcccccCCCc------cccccccccchhhhHhhhhcccccee
Q 001162 790 HAAVGRYLHSDSS------FEKHIKPTLVRDDFSQAMHEFLPVAM 828 (1134)
Q Consensus 790 ~~a~~r~~~~~~~------~~~~~~~~lt~eDf~~Al~~~~P~~l 828 (1134)
..+++|.+..... .....+..++.+||+.|+....|+..
T Consensus 430 m~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 430 MMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 9999876532110 01112245889999999999888654
No 45
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2e-29 Score=294.38 Aligned_cols=261 Identities=22% Similarity=0.314 Sum_probs=215.4
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
+.+.+++||+++.+.+|.+.+...+. .+++|.. |+.+..|||||||||||||.+|||+|-++. ..+..|..
T Consensus 668 nV~WdDVGGLeevK~eIldTIqlPL~--hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcs------L~FlSVKG 738 (953)
T KOG0736|consen 668 NVSWDDVGGLEEVKTEILDTIQLPLK--HPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECS------LNFLSVKG 738 (953)
T ss_pred ccchhcccCHHHHHHHHHHHhcCccc--Chhhhhc-cccccceeEEECCCCCchHHHHHHHHhhce------eeEEeecC
Confidence 45678999999999999998866442 4556655 566667899999999999999999999987 78888888
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
-+|...|.|+.++.++++|+.|+..+||||||||+|+++|+|+...+++.- ..++..+|+..+|++.... ...
T Consensus 739 PELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGV--MDRVVSQLLAELDgls~~~-----s~~ 811 (953)
T KOG0736|consen 739 PELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGV--MDRVVSQLLAELDGLSDSS-----SQD 811 (953)
T ss_pred HHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcccc--HHHHHHHHHHHhhcccCCC-----CCc
Confidence 899999999999999999999999999999999999999988766655433 3578889999999887522 236
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCC-HHHHHHHHHHHhhhcccCCCHH-HHHHHhhhc-CCCChhhHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPA-ASERKAILEHEIQRRSLECSDE-ILLDVASKC-DGYDAYDLEILVD 786 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~-~eeR~~IL~~~l~~~~l~~~~~-~l~~la~~t-eG~s~~DL~~Lv~ 786 (1134)
|+|||+||+|+.|||+|+||||||.-+++.+++ .+.+..+|+...++..+ +++ .+..+|+.| ..|+|+|+-.+|.
T Consensus 812 VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkL--dedVdL~eiAk~cp~~~TGADlYsLCS 889 (953)
T KOG0736|consen 812 VFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKL--DEDVDLVEIAKKCPPNMTGADLYSLCS 889 (953)
T ss_pred eEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccC--CCCcCHHHHHhhCCcCCchhHHHHHHH
Confidence 999999999999999999999999999998886 56788999988776544 333 478888887 6799999999999
Q ss_pred HHHHHHhcccccCCCc------cccccccccchhhhHhhhhcccccee
Q 001162 787 RTVHAAVGRYLHSDSS------FEKHIKPTLVRDDFSQAMHEFLPVAM 828 (1134)
Q Consensus 787 ~a~~~a~~r~~~~~~~------~~~~~~~~lt~eDf~~Al~~~~P~~l 828 (1134)
.|...|+.|..+.-.. ........++++||.++++++.|+..
T Consensus 890 dA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS 937 (953)
T KOG0736|consen 890 DAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVS 937 (953)
T ss_pred HHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCccc
Confidence 9999999886532211 11223466899999999999998743
No 46
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.96 E-value=8.8e-28 Score=303.47 Aligned_cols=459 Identities=15% Similarity=0.189 Sum_probs=287.9
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCC----ceeeEEEEE
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVFV 627 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~----~~~~~~~~v 627 (1134)
++..+.|.+..+..+++.+ .+ ....+++|+||||||||++++.+|+.+.... ....+++.+
T Consensus 185 ~ld~~iGr~~ei~~~i~~l---~r------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDIL---LR------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCcccCCHHHHHHHHHHH---hc------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 4567788888777666643 11 1235699999999999999999999885331 112456777
Q ss_pred eccccc--ccchhhHHHHHHHHHHHHhh-cCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccc
Q 001162 628 CCSRLS--LEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 704 (1134)
Q Consensus 628 ~~s~l~--~~~~~~~~~~l~~~f~~a~~-~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~ 704 (1134)
+.+.+. ..+.++++..++.+|+++.. ..+.||||||+|.+.+.++. .+.+ ...+.|...+..
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~-~~~~------d~~n~Lkp~l~~-------- 314 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQ-AGQG------DAANLLKPALAR-------- 314 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCc-cccc------cHHHHhhHHhhC--------
Confidence 777765 35678888999999998864 46789999999999864322 1111 122334443321
Q ss_pred cCCCcEEEEEecCCCC-----CCChhhccCCCccccccCCCCCHHHHHHHHHHHhhh----cccCCCHHHHHHHhhhcCC
Q 001162 705 CGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDG 775 (1134)
Q Consensus 705 ~~~~~V~vIattn~~~-----~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~----~~l~~~~~~l~~la~~teG 775 (1134)
|.+.+||+|+..+ .+|++|.| ||. .|.+++|+.+++.+||+.+... +++.++++++..++..+.+
T Consensus 315 ---G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 315 ---GELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred ---CCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 2589999999754 37999999 996 8999999999999998765432 4567899999999999988
Q ss_pred CCh-----hhHHHHHHHHHHHHhcccccC----------------------CCcc---ccc-c-----------------
Q 001162 776 YDA-----YDLEILVDRTVHAAVGRYLHS----------------------DSSF---EKH-I----------------- 807 (1134)
Q Consensus 776 ~s~-----~DL~~Lv~~a~~~a~~r~~~~----------------------~~~~---~~~-~----------------- 807 (1134)
|-+ .-...+++.|+.......... .... ... .
T Consensus 389 yi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (852)
T TIGR03345 389 YIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAA 468 (852)
T ss_pred ccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 754 334456666553322110000 0000 000 0
Q ss_pred ---------------------------------------------------------ccccchhhhHhhhhccccceecc
Q 001162 808 ---------------------------------------------------------KPTLVRDDFSQAMHEFLPVAMRD 830 (1134)
Q Consensus 808 ---------------------------------------------------------~~~lt~eDf~~Al~~~~P~~lr~ 830 (1134)
...++.+|+...+...+..-...
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~ 548 (852)
T TIGR03345 469 LEARWQQEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGR 548 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCchh
Confidence 00011111111111111000000
Q ss_pred ccccccC----CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc---C
Q 001162 831 ITKTSAE----GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---S 903 (1134)
Q Consensus 831 v~~~~~~----~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~---~ 903 (1134)
+...... ....--..|.|++++.+.+.+.+...... -..+-+|...+||+||||||||.+|+++|..+ .
T Consensus 549 ~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~g----l~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~ 624 (852)
T TIGR03345 549 MVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAG----LEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGE 624 (852)
T ss_pred hchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcC----CCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 0000000 00011235788998888888877642100 00112334458999999999999999999988 4
Q ss_pred CcEEEEeCcccch------------hcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhh
Q 001162 904 LRFISVKGPELLN------------KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1134)
Q Consensus 904 ~~~i~i~~~el~~------------~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ 971 (1134)
..++.++++++.. .|+|..+.. .+.+..+...++||+|||||.+ ...+.+.|++.
T Consensus 625 ~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka-----------~~~v~~~Llq~ 691 (852)
T TIGR03345 625 QNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKA-----------HPDVLELFYQV 691 (852)
T ss_pred cceEEEeHHHhhhhhhhccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhc-----------CHHHHHHHHHH
Confidence 5889999988743 255543322 2334446677899999999976 44677888888
Q ss_pred ccccc---------ccccEEEEEecCCCCc-----------------------------cchhhcCcCcccceeecCCCC
Q 001162 972 LDGVE---------VLTGVFVFAATSRPDL-----------------------------LDAALLRPGRLDRLLFCDFPS 1013 (1134)
Q Consensus 972 ld~~~---------~~~~v~vIatTn~p~~-----------------------------ld~allrpgRfd~~i~~~~p~ 1013 (1134)
||.-. ...+.+||.|||.... +.|+++. |++ +|.|.+.+
T Consensus 692 ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs 768 (852)
T TIGR03345 692 FDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLD 768 (852)
T ss_pred hhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCC
Confidence 86432 1356888889884211 4466776 897 88999999
Q ss_pred HHHHHHHHHHHHccC--------CCCCccc---HHHHHHhcc--CCcHHHHHHHHHHHHHHHHHHH
Q 001162 1014 PRERLDILKVISRKL--------PLADDVD---LEAIAHMTE--GFSGADLQALLSDAQLSAVHEI 1066 (1134)
Q Consensus 1014 ~~er~~Il~~~~~~~--------~~~~~vd---~~~La~~t~--g~sg~dl~~l~~~A~~~a~~~~ 1066 (1134)
.++..+|++..+..+ ++.-.++ .+.|+.... .|.++.++.+++.-...++.+.
T Consensus 769 ~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~ 834 (852)
T TIGR03345 769 DDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQ 834 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 999999998765432 3322333 445555443 2457888888877666666543
No 47
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.2e-29 Score=297.26 Aligned_cols=251 Identities=20% Similarity=0.284 Sum_probs=217.0
Q ss_pred cccccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEE
Q 001162 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (1134)
Q Consensus 548 ~~~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v 627 (1134)
+....|.++.|.++++++|.+.+.-+-+ ++.|..+|...|+|+||+||||||||.||||+|.+.+ .+|+.+
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~fLKN---P~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg------VPF~sv 375 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKFLKN---PEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG------VPFFSV 375 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHHhcC---HHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC------Cceeee
Confidence 3456789999999999999998877764 6689999999999999999999999999999999988 899999
Q ss_pred ecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCC
Q 001162 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1134)
Q Consensus 628 ~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1134)
+.+++.....+.-..+++++|..|+.++|||+||||||.+...+...............+++|+..||.+...
T Consensus 376 SGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~------- 448 (774)
T KOG0731|consen 376 SGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS------- 448 (774)
T ss_pred chHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC-------
Confidence 9999987777776888999999999999999999999999876642112223345567788888889987643
Q ss_pred CcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHH
Q 001162 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (1134)
Q Consensus 708 ~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~ 787 (1134)
..|+++++||+++-+|++|+|+|||+++|+++.|+..+|.+|++.++....+..++..+..+|..|.||+|+||.++|..
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~ne 528 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNE 528 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhH
Confidence 25999999999999999999999999999999999999999999999887776566678889999999999999999999
Q ss_pred HHHHHhcccccCCCccccccccccchhhhHhhhhcccc
Q 001162 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1134)
Q Consensus 788 a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P 825 (1134)
|...+.++ ....++..||..|++..+.
T Consensus 529 aa~~a~r~-----------~~~~i~~~~~~~a~~Rvi~ 555 (774)
T KOG0731|consen 529 AALLAARK-----------GLREIGTKDLEYAIERVIA 555 (774)
T ss_pred HHHHHHHh-----------ccCccchhhHHHHHHHHhc
Confidence 99888876 3356889999999885543
No 48
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7e-29 Score=256.01 Aligned_cols=244 Identities=22% Similarity=0.333 Sum_probs=203.6
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~ 631 (1134)
+..-++|++.++.+|.+.+.... ..+++|..+|+..|.|+|||||||||||.||+++|.... +.++.++.++
T Consensus 145 tYeMiGgLd~QIkeIkEVIeLPv--KHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~------c~firvsgse 216 (404)
T KOG0728|consen 145 TYEMIGGLDKQIKEIKEVIELPV--KHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD------CTFIRVSGSE 216 (404)
T ss_pred HHHHhccHHHHHHHHHHHHhccc--cCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc------eEEEEechHH
Confidence 35567899999999999875543 478999999999999999999999999999999999865 8899999999
Q ss_pred ccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEE
Q 001162 632 LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIA 711 (1134)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~ 711 (1134)
+..++.++-...++++|-.|+.|+|+|+|+||||++.+.+.+....+.++.+..+++ |++.+|++... .++-
T Consensus 217 lvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmle-llnqldgfeat-------knik 288 (404)
T KOG0728|consen 217 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLE-LLNQLDGFEAT-------KNIK 288 (404)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHH-HHHhccccccc-------cceE
Confidence 999999999999999999999999999999999999887766555444444333333 44455655433 3699
Q ss_pred EEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHH
Q 001162 712 FVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1134)
Q Consensus 712 vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~ 791 (1134)
+|++||+.+-+||+|.|+||+++.|+||+|+.+.|.+||+.+-.+.++. .--.+..+|....|.++++++.+|..|-..
T Consensus 289 vimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~-rgi~l~kiaekm~gasgaevk~vcteagm~ 367 (404)
T KOG0728|consen 289 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT-RGINLRKIAEKMPGASGAEVKGVCTEAGMY 367 (404)
T ss_pred EEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh-cccCHHHHHHhCCCCccchhhhhhhhhhHH
Confidence 9999999999999999999999999999999999999999765543321 112378999999999999999999999999
Q ss_pred HhcccccCCCccccccccccchhhhHhhhhcc
Q 001162 792 AVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1134)
Q Consensus 792 a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1134)
|++.. ...+|++||+-|....
T Consensus 368 alrer-----------rvhvtqedfemav~kv 388 (404)
T KOG0728|consen 368 ALRER-----------RVHVTQEDFEMAVAKV 388 (404)
T ss_pred HHHHh-----------hccccHHHHHHHHHHH
Confidence 88652 2568999999887654
No 49
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.2e-29 Score=255.38 Aligned_cols=246 Identities=20% Similarity=0.336 Sum_probs=207.8
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
..+..++||++-++.+|.+.+...+ ...+++.+.|+.||+|+|+|||||||||+|++++|+... +.++.+..
T Consensus 151 dvsy~diggld~qkqeireavelpl--t~~~ly~qigidpprgvllygppg~gktml~kava~~t~------a~firvvg 222 (408)
T KOG0727|consen 151 DVSYADIGGLDVQKQEIREAVELPL--THADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT------AAFIRVVG 222 (408)
T ss_pred CccccccccchhhHHHHHHHHhccc--hHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc------hheeeecc
Confidence 4456799999999999999876544 356899999999999999999999999999999999876 78999999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
+++..++.|+...+++++|..|+.++|+|+||||+|.++.++-+.+. +.....++++-.|++.||++.... +
T Consensus 223 sefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqt-gadrevqril~ellnqmdgfdq~~-------n 294 (408)
T KOG0727|consen 223 SEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQT-GADREVQRILIELLNQMDGFDQTT-------N 294 (408)
T ss_pred HHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccc-cccHHHHHHHHHHHHhccCcCccc-------c
Confidence 99999999999999999999999999999999999999876655433 234455666666777788776532 6
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
|-+|++||+.+.+||+|.||||+++.|+||.|+..++.-++.....+..+. ++.+++.+....+..+++|+..+|+.|-
T Consensus 295 vkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls-~~vdle~~v~rpdkis~adi~aicqeag 373 (408)
T KOG0727|consen 295 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS-DEVDLEDLVARPDKISGADINAICQEAG 373 (408)
T ss_pred eEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC-cccCHHHHhcCccccchhhHHHHHHHHh
Confidence 999999999999999999999999999999999999999998877654432 3335888888999999999999999999
Q ss_pred HHHhcccccCCCccccccccccchhhhHhhhhcc
Q 001162 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1134)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1134)
..|++. ..-.+...||+++....
T Consensus 374 m~avr~-----------nryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 374 MLAVRE-----------NRYVVLQKDFEKAYKTV 396 (408)
T ss_pred HHHHHh-----------cceeeeHHHHHHHHHhh
Confidence 988764 22457788999886554
No 50
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.96 E-value=1.8e-28 Score=285.13 Aligned_cols=248 Identities=21% Similarity=0.337 Sum_probs=204.2
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
..++.+++|++.+++++.+.+...+. .+.+|..+|+.+|+++|||||||||||++|+++|+.++ .+++.+.+
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~--~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~------~~fi~i~~ 212 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLT--CPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT------ATFIRVVG 212 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhc--CHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC------CCEEEEeh
Confidence 45688999999999999998865443 56789999999999999999999999999999999987 67788888
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
+.+...+.+.....++++|..|...+|+||||||+|.+++.+.+.... ...........|+..++.+... .+
T Consensus 213 s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~-~d~~~~r~l~~LL~~ld~~~~~-------~~ 284 (398)
T PTZ00454 213 SEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTG-ADREVQRILLELLNQMDGFDQT-------TN 284 (398)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCC-ccHHHHHHHHHHHHHhhccCCC-------CC
Confidence 888777778888889999999999999999999999998665433222 1222334444555556654332 25
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
+.+|++||+++.+|+++.|+|||+..|+|+.|+.++|.+|++.++.+.++. .+..+..++..|+||+++||+.+|.+|.
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g~sgaDI~~l~~eA~ 363 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIAAICQEAG 363 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999988765543 3345889999999999999999999999
Q ss_pred HHHhcccccCCCccccccccccchhhhHhhhhcccc
Q 001162 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1134)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P 825 (1134)
..|..+ ....++.+||.+|+.....
T Consensus 364 ~~A~r~-----------~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 364 MQAVRK-----------NRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred HHHHHc-----------CCCccCHHHHHHHHHHHHh
Confidence 988866 2256999999999887644
No 51
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.2e-29 Score=257.18 Aligned_cols=245 Identities=20% Similarity=0.336 Sum_probs=203.4
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
....+++||++.+++++++.+ +++....+.|..+|+.||.|+|+|||||||||.+||++|...+ +.|..+..
T Consensus 167 tE~YsDiGGldkQIqELvEAi--VLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~------aTFLKLAg 238 (424)
T KOG0652|consen 167 TEQYSDIGGLDKQIQELVEAI--VLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN------ATFLKLAG 238 (424)
T ss_pred cccccccccHHHHHHHHHHHh--ccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc------chHHHhcc
Confidence 345789999999999999976 4555578899999999999999999999999999999998765 44555555
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
-.+...+.+...+.+++.|..|+..+|+|+||||+|.+..++-+.+.++.-+.++.+++ |++.+|++.+.. .
T Consensus 239 PQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLE-LLNQLDGFss~~-------~ 310 (424)
T KOG0652|consen 239 PQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLE-LLNQLDGFSSDD-------R 310 (424)
T ss_pred hHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHH-HHHhhcCCCCcc-------c
Confidence 66666677888899999999999999999999999999988888777655444333333 445566665433 5
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHH-HHHHHhhhcCCCChhhHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE-ILLDVASKCDGYDAYDLEILVDRT 788 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~-~l~~la~~teG~s~~DL~~Lv~~a 788 (1134)
|-+|++||+.+-+||+|+|+||+++.|+||.|+.+.|..|++.+-.+ +.++++ .++.+|..|++|+|+..+.+|-.|
T Consensus 311 vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRK--Mnv~~DvNfeELaRsTddFNGAQcKAVcVEA 388 (424)
T KOG0652|consen 311 VKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRK--MNVSDDVNFEELARSTDDFNGAQCKAVCVEA 388 (424)
T ss_pred eEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhh--cCCCCCCCHHHHhhcccccCchhheeeehhh
Confidence 99999999999999999999999999999999999999999977654 444444 599999999999999999999999
Q ss_pred HHHHhcccccCCCccccccccccchhhhHhhhhcc
Q 001162 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1134)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1134)
-..|++| +...++.+||..++...
T Consensus 389 GMiALRr-----------~atev~heDfmegI~eV 412 (424)
T KOG0652|consen 389 GMIALRR-----------GATEVTHEDFMEGILEV 412 (424)
T ss_pred hHHHHhc-----------ccccccHHHHHHHHHHH
Confidence 9999887 33568899998876554
No 52
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.96 E-value=5.4e-27 Score=298.16 Aligned_cols=461 Identities=18% Similarity=0.248 Sum_probs=301.1
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCC----ceeeEEEEE
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVFV 627 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~----~~~~~~~~v 627 (1134)
.+..+.|.+..++.+++.+. ...+.+++|+||||||||++++.+|..+.... .....++.+
T Consensus 177 ~~~~~igr~~ei~~~~~~L~---------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILG---------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHc---------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 35567889999888877542 22346799999999999999999999875321 123567888
Q ss_pred eccccc--ccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccccc
Q 001162 628 CCSRLS--LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC 705 (1134)
Q Consensus 628 ~~s~l~--~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~ 705 (1134)
++..+. ..+.+++++.++.+|+++....+.||||||+|.|++.... ++. . .+.+.|...+..
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~-~g~--~----~~a~lLkp~l~r--------- 305 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAA-EGA--I----DAANILKPALAR--------- 305 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCC-CCc--c----cHHHHhHHHHhC---------
Confidence 887765 4567888999999999998778899999999999864321 221 1 233344433321
Q ss_pred CCCcEEEEEecCCCC-----CCChhhccCCCccccccCCCCCHHHHHHHHHHHhh----hcccCCCHHHHHHHhhhcCCC
Q 001162 706 GIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ----RRSLECSDEILLDVASKCDGY 776 (1134)
Q Consensus 706 ~~~~V~vIattn~~~-----~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~----~~~l~~~~~~l~~la~~teG~ 776 (1134)
+.+.+|++|+..+ ..+++|.+ ||. .+.++.|+.++...|++.... ..++.++++.+..++..+.+|
T Consensus 306 --g~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~y 380 (821)
T CHL00095 306 --GELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQY 380 (821)
T ss_pred --CCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Confidence 2488999998754 46899999 997 689999999999999986543 245568899999888888877
Q ss_pred Ch-----hhHHHHHHHHHHHHhccc--ccCC---------------------Ccc-------------------------
Q 001162 777 DA-----YDLEILVDRTVHAAVGRY--LHSD---------------------SSF------------------------- 803 (1134)
Q Consensus 777 s~-----~DL~~Lv~~a~~~a~~r~--~~~~---------------------~~~------------------------- 803 (1134)
.+ .-.-.+++.|+....... .+.. ...
T Consensus 381 i~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (821)
T CHL00095 381 IADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKK 460 (821)
T ss_pred CccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 334566776664332110 0000 000
Q ss_pred ----ccccccccchhhhHhhhhccccceeccccccccC----CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCC
Q 001162 804 ----EKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAE----GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPL 875 (1134)
Q Consensus 804 ----~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~~----~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~ 875 (1134)
.......++.+|+...+...+..-...+...... ....--..|.|++++.+.+...+...... -..+-
T Consensus 461 ~~~~~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~g----l~~~~ 536 (821)
T CHL00095 461 TEEEKRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVG----LKNPN 536 (821)
T ss_pred hhhcccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhc----ccCCC
Confidence 0000123555565555544432211111111000 00011245889999999998887632100 01122
Q ss_pred CCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccch-----h-------cccccHHHHHHHHHHhhhcCCeE
Q 001162 876 RLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN-----K-------YIGASEQAVRDIFSKATAAAPCL 940 (1134)
Q Consensus 876 ~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~-----~-------~~G~se~~v~~lf~~A~~~~P~V 940 (1134)
+|...+||+||+|||||++|+++|+.+ +.+++.++++++.. + |+|..+. ..+.+..+....+|
T Consensus 537 ~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~--~~l~~~~~~~p~~V 614 (821)
T CHL00095 537 RPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEG--GQLTEAVRKKPYTV 614 (821)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCcc--chHHHHHHhCCCeE
Confidence 344568999999999999999999987 46899999988742 2 4443332 23455556666689
Q ss_pred EEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc---------ccccEEEEEecCCCCc-------------------
Q 001162 941 LFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---------VLTGVFVFAATSRPDL------------------- 992 (1134)
Q Consensus 941 LfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~---------~~~~v~vIatTn~p~~------------------- 992 (1134)
++|||+|++ ...+.+.|++.||.-. ...+++||.|||....
T Consensus 615 vllDeieka-----------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~ 683 (821)
T CHL00095 615 VLFDEIEKA-----------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLS 683 (821)
T ss_pred EEECChhhC-----------CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccc
Confidence 999999987 4568889998887421 2357889999885311
Q ss_pred ------------------cchhhcCcCcccceeecCCCCHHHHHHHHHHHHccC-------CCCCccc---HHHHHHh--
Q 001162 993 ------------------LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL-------PLADDVD---LEAIAHM-- 1042 (1134)
Q Consensus 993 ------------------ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~-------~~~~~vd---~~~La~~-- 1042 (1134)
+.|.++. |+|.++.|.+.+.++..+|++..+.++ ++.-.++ .+.|+..
T Consensus 684 ~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~ 761 (821)
T CHL00095 684 EKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGY 761 (821)
T ss_pred cccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcC
Confidence 2245666 999999999999999999998766432 2222333 3445543
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHHHH
Q 001162 1043 TEGFSGADLQALLSDAQLSAVHEIL 1067 (1134)
Q Consensus 1043 t~g~sg~dl~~l~~~A~~~a~~~~~ 1067 (1134)
...|.++.|+.+++.-....+-+.+
T Consensus 762 ~~~~GAR~l~r~i~~~i~~~l~~~~ 786 (821)
T CHL00095 762 NPLYGARPLRRAIMRLLEDPLAEEV 786 (821)
T ss_pred CCCCChhhHHHHHHHHHHHHHHHHH
Confidence 2245578888887777666655443
No 53
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.96 E-value=3.1e-28 Score=288.63 Aligned_cols=244 Identities=21% Similarity=0.292 Sum_probs=202.7
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
..++.+++|++..++.+.+....+ ......+|+++|+|+|||||||||||++|+++|.+++ .+++.+++
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~-----~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~------~~~~~l~~ 292 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSF-----SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ------LPLLRLDV 292 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHh-----hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC------CCEEEEEh
Confidence 456889999998888877654322 1235678899999999999999999999999999988 78999999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
+.+.+.+.+.....++.+|..|...+||||||||+|.+++.+... .......++...|+..++... .+
T Consensus 293 ~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~---~d~~~~~rvl~~lL~~l~~~~---------~~ 360 (489)
T CHL00195 293 GKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK---GDSGTTNRVLATFITWLSEKK---------SP 360 (489)
T ss_pred HHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC---CCchHHHHHHHHHHHHHhcCC---------Cc
Confidence 999999999999999999999999999999999999998532221 122334566777777766421 25
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccC-CCHHHHHHHhhhcCCCChhhHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLE-CSDEILLDVASKCDGYDAYDLEILVDRT 788 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~-~~~~~l~~la~~teG~s~~DL~~Lv~~a 788 (1134)
++||+|||+++.+|+++.|+|||+..++++.|+.++|.+|++.++.+.... ..+..+..+|..|+||+|+||+.+|..|
T Consensus 361 V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA 440 (489)
T CHL00195 361 VFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEA 440 (489)
T ss_pred eEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999875433 3456689999999999999999999999
Q ss_pred HHHHhcccccCCCccccccccccchhhhHhhhhcccccee
Q 001162 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAM 828 (1134)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~l 828 (1134)
.+.+..+ ...++.+||..|+..+.|.+.
T Consensus 441 ~~~A~~~------------~~~lt~~dl~~a~~~~~Pls~ 468 (489)
T CHL00195 441 MYIAFYE------------KREFTTDDILLALKQFIPLAQ 468 (489)
T ss_pred HHHHHHc------------CCCcCHHHHHHHHHhcCCCcc
Confidence 9888643 135899999999999988753
No 54
>PF09262 PEX-1N: Peroxisome biogenesis factor 1, N-terminal ; InterPro: IPR015342 This domain adopts a double psi beta-barrel fold, similar in structure to the Cdc48 N-terminal domain. It has been suggested that this domain may be involved in interactions with ubiquitin, ubiquitin-like protein modifiers, or ubiquitin-like domains, such as Ubx. Furthermore, the domain may possess a putative adaptor or substrate binding site, allowing for peroxisomal biogenesis, membrane fusion and protein translocation []. ; GO: 0005524 ATP binding, 0007031 peroxisome organization, 0005777 peroxisome; PDB: 1WLF_A.
Probab=99.96 E-value=1e-29 Score=224.91 Aligned_cols=77 Identities=48% Similarity=0.830 Sum_probs=62.2
Q ss_pred ceEEEEecCCcchHHHHHhcHHHHHHHHhcccceecCCCEEEEEecCceEEEEEEcccCCCCC---eEEccCCCEEEEec
Q 001162 94 ATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKP---VVQLVPGTEVAVAP 170 (1134)
Q Consensus 94 ~~~v~veP~t~dDwei~e~~a~~~e~~ll~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~---~~~l~~~tev~vap 170 (1134)
|++|+|||+|+|||||||+||+|||++||+|+|||++||+||||++++++++|+|.++.|++. ||||+++|||+|||
T Consensus 1 A~~V~veP~T~dDWEIlEl~A~~lE~~lL~QiRvv~~~~~~~v~v~~~~~i~~~V~~i~p~~~~~~~~~L~~~TEv~VaP 80 (80)
T PF09262_consen 1 AKSVEVEPLTSDDWEILELHAEFLEDQLLSQIRVVFPGQVFPVWVSQNTVIKFKVVSIEPSSSAEGCARLSPDTEVIVAP 80 (80)
T ss_dssp -SEEEEEESSHHHHHHHHHS-SSHHHHHHHH--EE-TT-EEEEESSSS-EEEEEEEEEES--S---SEE--TT-EEEE--
T ss_pred CcEEEEEcCCccHHHHHHHhHHHHHHHHHHhheeecCCCEEEEEEcCCeEEEEEEEEccCCCCceeEEEeCCCcEEEECC
Confidence 689999999999999999999999999999999999999999999999999999999999985 99999999999998
No 55
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-28 Score=270.15 Aligned_cols=233 Identities=22% Similarity=0.309 Sum_probs=202.3
Q ss_pred ccccccccccccchhhHHHHHHHHHHhcCCCchhhhhhcC-CCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEE
Q 001162 547 QGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYH-LPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIV 625 (1134)
Q Consensus 547 ~~~~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~-~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~ 625 (1134)
..+..+|.+|+|++..++.+.+.+.. ....+.+|...+ ..++.|||||||||||||++|+++|++.+ +.++
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e~Vil--Plr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag------a~fI 156 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQELVIL--PLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG------ANFI 156 (386)
T ss_pred hhceeehhhccchHHHHHHHHHHHhh--cccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcC------CCcc
Confidence 34577899999999999999886644 334677775433 35778899999999999999999999988 8899
Q ss_pred EEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccccc
Q 001162 626 FVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC 705 (1134)
Q Consensus 626 ~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~ 705 (1134)
.|..+.+.++++++.++.++.+|..|..-+|+|+||||+|++++.|. +...+....+.+.|+..+|++..+...
T Consensus 157 nv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~----s~dHEa~a~mK~eFM~~WDGl~s~~~~-- 230 (386)
T KOG0737|consen 157 NVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR----STDHEATAMMKNEFMALWDGLSSKDSE-- 230 (386)
T ss_pred eeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc----cchHHHHHHHHHHHHHHhccccCCCCc--
Confidence 99999999999999999999999999999999999999999997652 445667788999999999998765432
Q ss_pred CCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHH
Q 001162 706 GIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILV 785 (1134)
Q Consensus 706 ~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv 785 (1134)
.|+|+|+||+|.++|.++.| |++..++++.|+.++|.+||+.+++...+. ++-++..+|..|+||+|+||+.+|
T Consensus 231 ---rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC 304 (386)
T KOG0737|consen 231 ---RVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELC 304 (386)
T ss_pred ---eEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHH
Confidence 49999999999999999999 999999999999999999999999876654 445699999999999999999999
Q ss_pred HHHHHHHhcccccC
Q 001162 786 DRTVHAAVGRYLHS 799 (1134)
Q Consensus 786 ~~a~~~a~~r~~~~ 799 (1134)
..|.+..++.++..
T Consensus 305 ~~Aa~~~ire~~~~ 318 (386)
T KOG0737|consen 305 RLAALRPIRELLVS 318 (386)
T ss_pred HHHhHhHHHHHHHh
Confidence 99999888776543
No 56
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.95 E-value=1.2e-27 Score=279.78 Aligned_cols=251 Identities=23% Similarity=0.344 Sum_probs=204.3
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
...+.+++|++.+++++.+.+...+. ++..|..+|+.+|+++|||||||||||++|+++|++++ .+++.++|
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~--~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~------~~~i~v~~ 198 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLK--KPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN------ATFIRVVG 198 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhh--CHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC------CCEEEeeh
Confidence 44577999999999999998865332 56789999999999999999999999999999999987 67888999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
+.+...+.+.....++.+|..+.++.|+||||||+|.+++.+.+...... ......+..++..++.+... ++
T Consensus 199 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~-~~~~~~l~~lL~~ld~~~~~-------~~ 270 (389)
T PRK03992 199 SELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGD-REVQRTLMQLLAEMDGFDPR-------GN 270 (389)
T ss_pred HHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCcc-HHHHHHHHHHHHhccccCCC-------CC
Confidence 99988888888888999999999999999999999999875544332222 22223333344444443321 25
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
+.||+|||.++.+|++++++|||+..++|++|+.++|.+||+.++.+..+. .+..+..++..|+||+++|++.+|++|.
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~~l~~eA~ 349 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLKAICTEAG 349 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999988754433 2245889999999999999999999999
Q ss_pred HHHhcccccCCCccccccccccchhhhHhhhhcccccee
Q 001162 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAM 828 (1134)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~l 828 (1134)
..|+.+ ....++.+||.+|+....+...
T Consensus 350 ~~a~~~-----------~~~~i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 350 MFAIRD-----------DRTEVTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred HHHHHc-----------CCCCcCHHHHHHHHHHHhcccc
Confidence 988765 2245899999999988876543
No 57
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.95 E-value=4.4e-28 Score=251.94 Aligned_cols=238 Identities=23% Similarity=0.321 Sum_probs=196.0
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
..++++++|.+.++..+.=-+..+-+| + .+|-=.|++||||||||||||++||++|.+.. .+++.+.+
T Consensus 117 ~it~ddViGqEeAK~kcrli~~yLenP---e---~Fg~WAPknVLFyGppGTGKTm~Akalane~k------vp~l~vka 184 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEYLENP---E---RFGDWAPKNVLFYGPPGTGKTMMAKALANEAK------VPLLLVKA 184 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHHhhCh---H---HhcccCcceeEEECCCCccHHHHHHHHhcccC------CceEEech
Confidence 455788899998877664433444432 2 34445589999999999999999999999987 88999999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
..+.|.++|+...++.++++.|...+|||+||||+|.+.-.+.-.+- .. .+..+.+.|+..||++.... +
T Consensus 185 t~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQel--RG-DVsEiVNALLTelDgi~ene-------G 254 (368)
T COG1223 185 TELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQEL--RG-DVSEIVNALLTELDGIKENE-------G 254 (368)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHh--cc-cHHHHHHHHHHhccCcccCC-------c
Confidence 99999999999999999999999999999999999999743322111 11 23477888889899877532 5
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHH-HHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE-ILVDRT 788 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~-~Lv~~a 788 (1134)
|+.||+||+++.||+++++ ||...|+|..|+.++|.+|++.++++..+.++.. ++.+++.|.|++++|++ .++..|
T Consensus 255 VvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK~a 331 (368)
T COG1223 255 VVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLKTA 331 (368)
T ss_pred eEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCchhHHHHHHHHH
Confidence 9999999999999999999 9999999999999999999999999877765544 89999999999999986 577888
Q ss_pred HHHHhcccccCCCccccccccccchhhhHhhhhcc
Q 001162 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1134)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1134)
.|.|+.. +...+..+|++.|++.-
T Consensus 332 Lh~Ai~e-----------d~e~v~~edie~al~k~ 355 (368)
T COG1223 332 LHRAIAE-----------DREKVEREDIEKALKKE 355 (368)
T ss_pred HHHHHHh-----------chhhhhHHHHHHHHHhh
Confidence 8888754 33568899999998763
No 58
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.7e-28 Score=256.72 Aligned_cols=246 Identities=20% Similarity=0.329 Sum_probs=200.7
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
..++.+++|++.++.+|.+.+.. ....+++|...|+.||.||+|||+||||||.||+++|+... +.|..+-.
T Consensus 181 ~Ety~diGGle~QiQEiKEsvEL--PLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS------ATFlRvvG 252 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKESVEL--PLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS------ATFLRVVG 252 (440)
T ss_pred hhhhcccccHHHHHHHHHHhhcC--CCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc------hhhhhhhh
Confidence 34578999999999999997654 34478999999999999999999999999999999999766 77888899
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
+++..++.++-.+.++++|+.|..++|+|+||||||.+..++-+.... .....++..-.|++.+|.+.. .+.
T Consensus 253 seLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~Sg-gerEiQrtmLELLNQldGFds-------rgD 324 (440)
T KOG0726|consen 253 SELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSG-GEREIQRTMLELLNQLDGFDS-------RGD 324 (440)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCc-cHHHHHHHHHHHHHhccCccc-------cCC
Confidence 999999999999999999999999999999999999998765543322 222222222233344444443 357
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHH-HHHHHhhhcCCCChhhHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE-ILLDVASKCDGYDAYDLEILVDRT 788 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~-~l~~la~~teG~s~~DL~~Lv~~a 788 (1134)
|-||++||..+.+||+|.||||+++.|+|+.||...+..||..+..+.. +.++ .++.+...-+.++++|++.+|..|
T Consensus 325 vKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mt--l~~dVnle~li~~kddlSGAdIkAictEa 402 (440)
T KOG0726|consen 325 VKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMT--LAEDVNLEELIMTKDDLSGADIKAICTEA 402 (440)
T ss_pred eEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccc--hhccccHHHHhhcccccccccHHHHHHHH
Confidence 9999999999999999999999999999999999999999987665433 3333 377777778899999999999999
Q ss_pred HHHHhcccccCCCccccccccccchhhhHhhhhccc
Q 001162 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (1134)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~ 824 (1134)
-..|++.. ...++.+||.+|.+...
T Consensus 403 GllAlRer-----------Rm~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 403 GLLALRER-----------RMKVTMEDFKKAKEKVL 427 (440)
T ss_pred hHHHHHHH-----------HhhccHHHHHHHHHHHH
Confidence 99888653 25689999999987654
No 59
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.1e-28 Score=254.36 Aligned_cols=225 Identities=22% Similarity=0.335 Sum_probs=194.1
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
..+.+++.|++.+++.+.+.+ ++.-..+++|..-..|. +++||||||||||++||+++|-+.+ ..+..|+.
T Consensus 129 NVkWsDVAGLE~AKeALKEAV--ILPIKFPqlFtGkR~Pw-rgiLLyGPPGTGKSYLAKAVATEAn------STFFSvSS 199 (439)
T KOG0739|consen 129 NVKWSDVAGLEGAKEALKEAV--ILPIKFPQLFTGKRKPW-RGILLYGPPGTGKSYLAKAVATEAN------STFFSVSS 199 (439)
T ss_pred CCchhhhccchhHHHHHHhhe--eecccchhhhcCCCCcc-eeEEEeCCCCCcHHHHHHHHHhhcC------CceEEeeh
Confidence 345678899999999988865 44444678888766555 5699999999999999999999987 66888999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
++|..++.++.++.++.+|+.|+.+.|+||||||||.+++.+++.+ ++.++++...|+-.|.+...... .
T Consensus 200 SDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enE----seasRRIKTEfLVQMqGVG~d~~------g 269 (439)
T KOG0739|consen 200 SDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENE----SEASRRIKTEFLVQMQGVGNDND------G 269 (439)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCc----hHHHHHHHHHHHHhhhccccCCC------c
Confidence 9999999999999999999999999999999999999998665543 34556777777777877654432 5
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
|+|+++||-|..||.+++| ||+.+|++|.|+...|..+++.++......+++.++.+++..|+||+|+|+..+|+.|+
T Consensus 270 vLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDal 347 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDAL 347 (439)
T ss_pred eEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhh
Confidence 9999999999999999999 99999999999999999999999887777889999999999999999999999999988
Q ss_pred HHHhcc
Q 001162 790 HAAVGR 795 (1134)
Q Consensus 790 ~~a~~r 795 (1134)
.+-+++
T Consensus 348 mePvRk 353 (439)
T KOG0739|consen 348 MEPVRK 353 (439)
T ss_pred hhhHHH
Confidence 776654
No 60
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.95 E-value=1.1e-25 Score=286.89 Aligned_cols=461 Identities=15% Similarity=0.227 Sum_probs=286.7
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCC----ceeeEEEEE
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVFV 627 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~----~~~~~~~~v 627 (1134)
.+..+.|.+..+..+++.+. .....+++|+||||||||++++.+|+.+.... ....+++.+
T Consensus 171 ~~~~~igr~~ei~~~~~~l~---------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLS---------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHh---------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 35567888887766665431 12235689999999999999999999874321 112567778
Q ss_pred eccccc--ccchhhHHHHHHHHHHHHhh-cCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccc
Q 001162 628 CCSRLS--LEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 704 (1134)
Q Consensus 628 ~~s~l~--~~~~~~~~~~l~~~f~~a~~-~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~ 704 (1134)
+...+. ..+.+.++..+..+|..+.. ..+.||||||+|.|++.... .+. . ...+.|...+.
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~-~~~--~----d~~~~Lk~~l~--------- 299 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKA-EGA--M----DAGNMLKPALA--------- 299 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCC-cch--h----HHHHHhchhhh---------
Confidence 877764 35667888889999998865 35899999999999853221 111 1 22333433321
Q ss_pred cCCCcEEEEEecCCCC-----CCChhhccCCCccccccCCCCCHHHHHHHHHHHhhh----cccCCCHHHHHHHhhhcCC
Q 001162 705 CGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDG 775 (1134)
Q Consensus 705 ~~~~~V~vIattn~~~-----~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~----~~l~~~~~~l~~la~~teG 775 (1134)
.+.+.+||+|+..+ .+|+++.+ ||. .|.++.|+.+++..||+.+... +++.+.++.+..++..+.+
T Consensus 300 --~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~ 374 (852)
T TIGR03346 300 --RGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHR 374 (852)
T ss_pred --cCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccc
Confidence 12589999999764 47999999 997 6899999999999999876554 3455788888888888776
Q ss_pred CC-----hhhHHHHHHHHHHHHhcccc--cCC-------------------Cccccc-----------------------
Q 001162 776 YD-----AYDLEILVDRTVHAAVGRYL--HSD-------------------SSFEKH----------------------- 806 (1134)
Q Consensus 776 ~s-----~~DL~~Lv~~a~~~a~~r~~--~~~-------------------~~~~~~----------------------- 806 (1134)
|- |.-.-.|++.|+.....+.. +.. ......
T Consensus 375 yi~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (852)
T TIGR03346 375 YITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLE 454 (852)
T ss_pred cccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 33445566666643321100 000 000000
Q ss_pred ---------------------------------------------------------------------cccccchhhhH
Q 001162 807 ---------------------------------------------------------------------IKPTLVRDDFS 817 (1134)
Q Consensus 807 ---------------------------------------------------------------------~~~~lt~eDf~ 817 (1134)
....++.+|+.
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~ 534 (852)
T TIGR03346 455 EQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIA 534 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHH
Confidence 00001111111
Q ss_pred hhhhccccceecccccccc----CCCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhH
Q 001162 818 QAMHEFLPVAMRDITKTSA----EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTH 893 (1134)
Q Consensus 818 ~Al~~~~P~~lr~v~~~~~----~~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~ 893 (1134)
..+...+............ .....-...+.|++.+.+.+...+...... -..+.+|...+||+||+|||||+
T Consensus 535 ~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~g----l~~~~~p~~~~Lf~Gp~GvGKt~ 610 (852)
T TIGR03346 535 EVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAG----LSDPNRPIGSFLFLGPTGVGKTE 610 (852)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhcc----CCCCCCCCeEEEEEcCCCCCHHH
Confidence 1111110000000000000 000012345788888888888777642100 00122345679999999999999
Q ss_pred HHHHHHHHc---CCcEEEEeCcccchh------------cccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCC
Q 001162 894 IVGAAAAAC---SLRFISVKGPELLNK------------YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNT 958 (1134)
Q Consensus 894 lA~alA~~~---~~~~i~i~~~el~~~------------~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~ 958 (1134)
+|+++|..+ +.+++.++++++... |+|..+. ..+....+....+|||||||+.+
T Consensus 611 lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~--g~l~~~v~~~p~~vlllDeieka--------- 679 (852)
T TIGR03346 611 LAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEG--GQLTEAVRRKPYSVVLFDEVEKA--------- 679 (852)
T ss_pred HHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccc--cHHHHHHHcCCCcEEEEeccccC---------
Confidence 999999977 578999999876432 2332221 22334445555679999999987
Q ss_pred cchhhHHHhHhhhccccc---------ccccEEEEEecCCCCc-------------------------cchhhcCcCccc
Q 001162 959 GVTDRVVNQFLTELDGVE---------VLTGVFVFAATSRPDL-------------------------LDAALLRPGRLD 1004 (1134)
Q Consensus 959 ~~~~rv~~~lL~~ld~~~---------~~~~v~vIatTn~p~~-------------------------ld~allrpgRfd 1004 (1134)
...+.+.|++.|+.-. ...+++||+|||.... +.|.|+. |+|
T Consensus 680 --~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid 755 (852)
T TIGR03346 680 --HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RID 755 (852)
T ss_pred --CHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcC
Confidence 4567888888885321 2356889999997321 3356666 999
Q ss_pred ceeecCCCCHHHHHHHHHHHHcc-------CCCCCccc---HHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHH
Q 001162 1005 RLLFCDFPSPRERLDILKVISRK-------LPLADDVD---LEAIAHMT--EGFSGADLQALLSDAQLSAVHEIL 1067 (1134)
Q Consensus 1005 ~~i~~~~p~~~er~~Il~~~~~~-------~~~~~~vd---~~~La~~t--~g~sg~dl~~l~~~A~~~a~~~~~ 1067 (1134)
.++.|.+++.++..+|+...+.. .++.-.++ .+.|+... ..+..+.|+.+++......+-+.+
T Consensus 756 ~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~ 830 (852)
T TIGR03346 756 EIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKI 830 (852)
T ss_pred eEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999866532 22222333 44455542 245678999998888877765544
No 61
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.95 E-value=6.1e-27 Score=273.72 Aligned_cols=247 Identities=21% Similarity=0.324 Sum_probs=201.2
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
..++.+++|++.+++++.+.+...+ .++.+|..+|+.+|.++|||||||||||++|+++|+++. .+++.+.+
T Consensus 179 ~~~~~DIgGl~~qi~~l~e~v~lpl--~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~------~~fi~V~~ 250 (438)
T PTZ00361 179 LESYADIGGLEQQIQEIKEAVELPL--THPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS------ATFLRVVG 250 (438)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHhhh--hCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC------CCEEEEec
Confidence 3567899999999999999886543 357789999999999999999999999999999999986 66788888
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
+.+...+.+.....++.+|..|.++.|+||||||+|.++..+.+...... ......+..|+..++.+... .+
T Consensus 251 seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~-~e~qr~ll~LL~~Ldg~~~~-------~~ 322 (438)
T PTZ00361 251 SELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGE-KEIQRTMLELLNQLDGFDSR-------GD 322 (438)
T ss_pred chhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCccc-HHHHHHHHHHHHHHhhhccc-------CC
Confidence 88888888888888999999999999999999999999865543322222 22223333455555654322 25
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
+.||++||.++.+|+++.|+|||+..|+|+.|+.++|.+||+.++.+..+. .+..+..++..++||+++|++.+|..|.
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-~dvdl~~la~~t~g~sgAdI~~i~~eA~ 401 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-EDVDLEEFIMAKDELSGADIKAICTEAG 401 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-cCcCHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999887754432 2335789999999999999999999999
Q ss_pred HHHhcccccCCCccccccccccchhhhHhhhhccc
Q 001162 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (1134)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~ 824 (1134)
..|..+ ....++.+||..|++...
T Consensus 402 ~~Alr~-----------~r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 402 LLALRE-----------RRMKVTQADFRKAKEKVL 425 (438)
T ss_pred HHHHHh-----------cCCccCHHHHHHHHHHHH
Confidence 988765 235699999999987753
No 62
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.95 E-value=1.6e-25 Score=284.07 Aligned_cols=461 Identities=15% Similarity=0.234 Sum_probs=277.1
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc----eeeEEEEE
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFV 627 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~----~~~~~~~v 627 (1134)
.+..+.|.+..+..+++-+.. ....+++|+||||||||++++.+|..+..... ....++.+
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r---------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQR---------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhc---------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 456678888876666654311 12356999999999999999999998853210 12677888
Q ss_pred eccccc--ccchhhHHHHHHHHHHHHhh-cCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccc
Q 001162 628 CCSRLS--LEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 704 (1134)
Q Consensus 628 ~~s~l~--~~~~~~~~~~l~~~f~~a~~-~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~ 704 (1134)
+...+. ..+.+.++..++.+|..... ..+.||||||+|.|.+.... +++ . ...+.|...+.
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~-~~~--~----d~~~~lkp~l~--------- 304 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA-DGA--M----DAGNMLKPALA--------- 304 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC-ccc--h----hHHHHhcchhh---------
Confidence 887765 34668888899999987643 56889999999999864321 111 1 22333433322
Q ss_pred cCCCcEEEEEecCCCC-----CCChhhccCCCccccccCCCCCHHHHHHHHHHHhhh----cccCCCHHHHHHHhhhcCC
Q 001162 705 CGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDG 775 (1134)
Q Consensus 705 ~~~~~V~vIattn~~~-----~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~----~~l~~~~~~l~~la~~teG 775 (1134)
.|.+.+||+|+..+ .+|++|.| ||+ .|.++.|+.+++..||+.+... +++.++++.+...+..+++
T Consensus 305 --~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~r 379 (857)
T PRK10865 305 --RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHR 379 (857)
T ss_pred --cCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhc
Confidence 13589999999876 37999999 997 6889999999999999876643 3456677777666666655
Q ss_pred CC-----hhhHHHHHHHHHHHHhccccc-----------------------CCCccc-----------------------
Q 001162 776 YD-----AYDLEILVDRTVHAAVGRYLH-----------------------SDSSFE----------------------- 804 (1134)
Q Consensus 776 ~s-----~~DL~~Lv~~a~~~a~~r~~~-----------------------~~~~~~----------------------- 804 (1134)
|. |.....+++.++......... ......
T Consensus 380 y~~~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~ 459 (857)
T PRK10865 380 YIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELE 459 (857)
T ss_pred cccCCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 222223333332111000000 000000
Q ss_pred -----------------------------------------------------------------cccccccchhhhHhh
Q 001162 805 -----------------------------------------------------------------KHIKPTLVRDDFSQA 819 (1134)
Q Consensus 805 -----------------------------------------------------------------~~~~~~lt~eDf~~A 819 (1134)
......++.+|+...
T Consensus 460 eq~k~~k~el~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~v 539 (857)
T PRK10865 460 EEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEV 539 (857)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHH
Confidence 000001112222222
Q ss_pred hhccccceecccccccc----CCCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHH
Q 001162 820 MHEFLPVAMRDITKTSA----EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIV 895 (1134)
Q Consensus 820 l~~~~P~~lr~v~~~~~----~~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 895 (1134)
+...+..-...+..... .....-...+.|++.+.+.+...+...... -..+.+|...+||+||+|||||++|
T Consensus 540 v~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~g----l~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 540 LARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAG----LSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred HHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhc----ccCCCCCCceEEEECCCCCCHHHHH
Confidence 21111100000000000 000012345778888888887777532100 0011233346899999999999999
Q ss_pred HHHHHHc---CCcEEEEeCcccchh------------cccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcc
Q 001162 896 GAAAAAC---SLRFISVKGPELLNK------------YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGV 960 (1134)
Q Consensus 896 ~alA~~~---~~~~i~i~~~el~~~------------~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~ 960 (1134)
+++|..+ +.+|+.++++++... |+|..+.. .+....+....+||||||++.+
T Consensus 616 ~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g--~l~~~v~~~p~~vLllDEieka----------- 682 (857)
T PRK10865 616 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGG--YLTEAVRRRPYSVILLDEVEKA----------- 682 (857)
T ss_pred HHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhH--HHHHHHHhCCCCeEEEeehhhC-----------
Confidence 9999977 467999999887432 22322211 1222233444589999999987
Q ss_pred hhhHHHhHhhhcccc---------cccccEEEEEecCCCC-------------------------ccchhhcCcCcccce
Q 001162 961 TDRVVNQFLTELDGV---------EVLTGVFVFAATSRPD-------------------------LLDAALLRPGRLDRL 1006 (1134)
Q Consensus 961 ~~rv~~~lL~~ld~~---------~~~~~v~vIatTn~p~-------------------------~ld~allrpgRfd~~ 1006 (1134)
...+.+.|++.|+.- ....+.+||+|||... .+.|+|+. |+|.+
T Consensus 683 ~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~i 760 (857)
T PRK10865 683 HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEV 760 (857)
T ss_pred CHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCee
Confidence 345778888877531 1234577888998731 14467887 99999
Q ss_pred eecCCCCHHHHHHHHHHHHccC-------CCCCcccHHHHHHhc-cCCc----HHHHHHHHHHHHHHHHHHHH
Q 001162 1007 LFCDFPSPRERLDILKVISRKL-------PLADDVDLEAIAHMT-EGFS----GADLQALLSDAQLSAVHEIL 1067 (1134)
Q Consensus 1007 i~~~~p~~~er~~Il~~~~~~~-------~~~~~vd~~~La~~t-~g~s----g~dl~~l~~~A~~~a~~~~~ 1067 (1134)
+.|.+++.+....|++..+.++ ++.-.++.+.+.... .||+ .+.|+.+++.-....+-+.+
T Consensus 761 ivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~i 833 (857)
T PRK10865 761 VVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQI 833 (857)
T ss_pred EecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988766442 333344444444332 2444 67888888777666554433
No 63
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.1e-26 Score=274.50 Aligned_cols=462 Identities=16% Similarity=0.218 Sum_probs=306.3
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc----eeeEEEE
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVF 626 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~----~~~~~~~ 626 (1134)
.+++-++|.+..+..+++-|.. ...++-+|.|+||+|||.++..+|.....+.- ....++.
T Consensus 167 gklDPvIGRd~EI~r~iqIL~R---------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s 231 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSR---------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS 231 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhc---------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE
Confidence 4567788999988888775422 12355788899999999999999998764421 2356777
Q ss_pred Eeccccc--ccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccc
Q 001162 627 VCCSRLS--LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 704 (1134)
Q Consensus 627 v~~s~l~--~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~ 704 (1134)
+|...+. ..+.|+++.+++.++++.....+.||||||+|.+.+..+... . ..+ ..+.|.-.+..
T Consensus 232 LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~D----AaNiLKPaLAR-------- 297 (786)
T COG0542 232 LDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMD----AANLLKPALAR-------- 297 (786)
T ss_pred ecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccc----hhhhhHHHHhc--------
Confidence 8887776 567799999999999999988899999999999997533222 1 122 23344443322
Q ss_pred cCCCcEEEEEecCCCC-----CCChhhccCCCccccccCCCCCHHHHHHHHHHHhh----hcccCCCHHHHHHHhhhcCC
Q 001162 705 CGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ----RRSLECSDEILLDVASKCDG 775 (1134)
Q Consensus 705 ~~~~~V~vIattn~~~-----~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~----~~~l~~~~~~l~~la~~teG 775 (1134)
|-+.+||+|+..+ .-|++|.| ||. .|.+..|+.++-..||+.+-. .+++.++++++.+.+..+..
T Consensus 298 ---GeL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~R 371 (786)
T COG0542 298 ---GELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDR 371 (786)
T ss_pred ---CCeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHh
Confidence 2478888888644 24899999 998 899999999999999986533 35677899998887777655
Q ss_pred C-----ChhhHHHHHHHHHHHHhcccc-cCCC---------------cc--cc--cccc---------------------
Q 001162 776 Y-----DAYDLEILVDRTVHAAVGRYL-HSDS---------------SF--EK--HIKP--------------------- 809 (1134)
Q Consensus 776 ~-----s~~DL~~Lv~~a~~~a~~r~~-~~~~---------------~~--~~--~~~~--------------------- 809 (1134)
| -|.-...+++.|+........ +..- .. +. ....
T Consensus 372 YI~dR~LPDKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 451 (786)
T COG0542 372 YIPDRFLPDKAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELE 451 (786)
T ss_pred hcccCCCCchHHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHh
Confidence 4 444455667776654432210 0000 00 00 0000
Q ss_pred -ccchhhhHhhhhccccceecccccccc----CCCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEE
Q 001162 810 -TLVRDDFSQAMHEFLPVAMRDITKTSA----EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLY 884 (1134)
Q Consensus 810 -~lt~eDf~~Al~~~~P~~lr~v~~~~~----~~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~ 884 (1134)
.++.+++...+..++..-......... .....--..|.|++++...+.+.+.... ..-..+.+|...+||.
T Consensus 452 ~~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraR----aGL~dp~rPigsFlF~ 527 (786)
T COG0542 452 AEVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRAR----AGLGDPNRPIGSFLFL 527 (786)
T ss_pred hccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHh----cCCCCCCCCceEEEee
Confidence 033344555444443211111100000 0001123468999999999988887421 1111233566679999
Q ss_pred cCCCCchhHHHHHHHHHcC---CcEEEEeCcccch------------hcccccHHHHHHHHHHhhhcCCeEEEEcCcccc
Q 001162 885 GPPGCGKTHIVGAAAAACS---LRFISVKGPELLN------------KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSI 949 (1134)
Q Consensus 885 GppGtGKT~lA~alA~~~~---~~~i~i~~~el~~------------~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l 949 (1134)
||+|+|||.+|+++|..+. .+++.+++||+.. .|+|..+. ..+-+..+...+|||+||||++.
T Consensus 528 GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 528 GPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred CCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhc
Confidence 9999999999999999996 7999999999865 36666553 23555567777899999999997
Q ss_pred cCCCCCCCCcchhhHHHhHhhhccccc---------ccccEEEEEecCCCCc----------------------------
Q 001162 950 APKRGHDNTGVTDRVVNQFLTELDGVE---------VLTGVFVFAATSRPDL---------------------------- 992 (1134)
Q Consensus 950 ~~~r~~~~~~~~~rv~~~lL~~ld~~~---------~~~~v~vIatTn~p~~---------------------------- 992 (1134)
+..++|-||+.||.-. ...+++||.|||--..
T Consensus 606 -----------HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~ 674 (786)
T COG0542 606 -----------HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKH 674 (786)
T ss_pred -----------CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhh
Confidence 5679999999998532 2346899999983211
Q ss_pred cchhhcCcCcccceeecCCCCHHHHHHHHHHHHccC-------CCCCccc---HHHHHHhc--cCCcHHHHHHHHHHHHH
Q 001162 993 LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL-------PLADDVD---LEAIAHMT--EGFSGADLQALLSDAQL 1060 (1134)
Q Consensus 993 ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~-------~~~~~vd---~~~La~~t--~g~sg~dl~~l~~~A~~ 1060 (1134)
+.|.++. |+|.+|.|.+.+.+...+|+...+..+ ++.-.++ .+.|+... ..|.++-|+.+++.-..
T Consensus 675 F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~ 752 (786)
T COG0542 675 FRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIE 752 (786)
T ss_pred CCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHH
Confidence 3456666 999999999999999999998766432 3322222 23344332 34667788777776665
Q ss_pred HHHHHH
Q 001162 1061 SAVHEI 1066 (1134)
Q Consensus 1061 ~a~~~~ 1066 (1134)
..+.+.
T Consensus 753 ~~La~~ 758 (786)
T COG0542 753 DPLADE 758 (786)
T ss_pred HHHHHH
Confidence 555443
No 64
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3e-26 Score=278.01 Aligned_cols=248 Identities=25% Similarity=0.354 Sum_probs=212.6
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
...+.+++|++..++.+.+.+...+. .++.|...++.++.++|||||||||||+||+++|.+++ .+++.+..
T Consensus 238 ~v~~~diggl~~~k~~l~e~v~~~~~--~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~------~~fi~v~~ 309 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEAIETPLK--RPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR------SRFISVKG 309 (494)
T ss_pred CcceehhhcHHHHHHHHHHHHHhHhh--ChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC------CeEEEeeC
Confidence 45678889999998888887765443 45567888999999999999999999999999999887 88999999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
+.+.+.+.+++++.++.+|..|...+||||||||+|++++.++...+. ....+...|+..++...... +
T Consensus 310 ~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~----~~~r~~~~lL~~~d~~e~~~-------~ 378 (494)
T COG0464 310 SELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG----SGRRVVGQLLTELDGIEKAE-------G 378 (494)
T ss_pred HHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch----HHHHHHHHHHHHhcCCCccC-------c
Confidence 999999999999999999999999999999999999999765543322 12477888888888765433 5
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccC-CCHHHHHHHhhhcCCCChhhHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLE-CSDEILLDVASKCDGYDAYDLEILVDRT 788 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~-~~~~~l~~la~~teG~s~~DL~~Lv~~a 788 (1134)
|++|++||.++.+|+++.|+|||+..+++++||.++|.+|++.++...... ..+.++..++..|+||+++|+..+|++|
T Consensus 379 v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea 458 (494)
T COG0464 379 VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREA 458 (494)
T ss_pred eEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999865543 4556789999999999999999999999
Q ss_pred HHHHhcccccCCCccccccccccchhhhHhhhhccccc
Q 001162 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1134)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~ 826 (1134)
...+..+.. ...++.+||..|++...|+
T Consensus 459 ~~~~~~~~~----------~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 459 ALEALREAR----------RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred HHHHHHHhc----------cCCccHHHHHHHHHhcCCC
Confidence 999887632 3468999999999886665
No 65
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.3e-26 Score=241.23 Aligned_cols=246 Identities=19% Similarity=0.254 Sum_probs=202.3
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
..+.++++|..++++.+.+.+... ..+++.|..+|+.||.|+|+|||||||||.+||++|+... +.++.+-.
T Consensus 173 dvty~dvggckeqieklrevve~p--ll~perfv~lgidppkgvllygppgtgktl~aravanrtd------acfirvig 244 (435)
T KOG0729|consen 173 DVTYSDVGGCKEQIEKLREVVELP--LLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD------ACFIRVIG 244 (435)
T ss_pred CcccccccchHHHHHHHHHHHhcc--ccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC------ceEEeehh
Confidence 456789999999999999977542 2367899999999999999999999999999999999876 88999999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
+++..++.++-..+++++|+.|+....||+||||+|.+.+.+-+.... .....++..-.|...+|.+.. .++
T Consensus 245 selvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~g-gdnevqrtmleli~qldgfdp-------rgn 316 (435)
T KOG0729|consen 245 SELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAG-GDNEVQRTMLELINQLDGFDP-------RGN 316 (435)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCC-CcHHHHHHHHHHHHhccCCCC-------CCC
Confidence 999999999999999999999999999999999999998766554333 333333333334444555443 457
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHH-HHHHHhhhcCCCChhhHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE-ILLDVASKCDGYDAYDLEILVDRT 788 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~-~l~~la~~teG~s~~DL~~Lv~~a 788 (1134)
+-++++||+++.+||+|+|+||+++.++|..|+.+.|..||+.+.+. +.+..+ -++.+|..|..-++++++.+|.+|
T Consensus 317 ikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaks--msverdir~ellarlcpnstgaeirsvctea 394 (435)
T KOG0729|consen 317 IKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKS--MSVERDIRFELLARLCPNSTGAEIRSVCTEA 394 (435)
T ss_pred eEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccc--cccccchhHHHHHhhCCCCcchHHHHHHHHh
Confidence 99999999999999999999999999999999999999999876543 344444 378899999999999999999999
Q ss_pred HHHHhcccccCCCccccccccccchhhhHhhhhccc
Q 001162 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (1134)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~ 824 (1134)
-..|++.. ....|..||..|.....
T Consensus 395 gmfairar-----------rk~atekdfl~av~kvv 419 (435)
T KOG0729|consen 395 GMFAIRAR-----------RKVATEKDFLDAVNKVV 419 (435)
T ss_pred hHHHHHHH-----------hhhhhHHHHHHHHHHHH
Confidence 98887542 14578889988876654
No 66
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.2e-26 Score=265.06 Aligned_cols=227 Identities=25% Similarity=0.258 Sum_probs=194.7
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s 630 (1134)
....+++|+.++++-+.+.+ .....++++|....++.+.|||||||||||||.||-++|...+ ..++.+..-
T Consensus 664 i~w~digg~~~~k~~l~~~i--~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~------~~fisvKGP 735 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVI--EWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN------LRFISVKGP 735 (952)
T ss_pred CCceecccHHHHHHHHHHHH--hccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC------eeEEEecCH
Confidence 55678888888877766654 3345578999999999999999999999999999999999877 778888888
Q ss_pred cccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcE
Q 001162 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1134)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1134)
++..++.|..++.++++|..|...+||||||||+|+++|+|+.... -...++.++|+..||+...- .+|
T Consensus 736 ElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsT----GVTDRVVNQlLTelDG~Egl-------~GV 804 (952)
T KOG0735|consen 736 ELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDST----GVTDRVVNQLLTELDGAEGL-------DGV 804 (952)
T ss_pred HHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCC----CchHHHHHHHHHhhcccccc-------ceE
Confidence 9999999999999999999999999999999999999987653321 12347888999988875432 369
Q ss_pred EEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHH
Q 001162 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 711 ~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~ 790 (1134)
.++|+|.+|+.|||+|+||||+++.+.-+.|++.+|.+|++.+..... .-++.+++.+|..|+||+++||..++..|..
T Consensus 805 ~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~-~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l 883 (952)
T KOG0735|consen 805 YILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLL-KDTDVDLECLAQKTDGFTGADLQSLLYNAQL 883 (952)
T ss_pred EEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccC-CccccchHHHhhhcCCCchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998766433 2355679999999999999999999999988
Q ss_pred HHhcccc
Q 001162 791 AAVGRYL 797 (1134)
Q Consensus 791 ~a~~r~~ 797 (1134)
.++.+.+
T Consensus 884 ~avh~~l 890 (952)
T KOG0735|consen 884 AAVHEIL 890 (952)
T ss_pred HHHHHHH
Confidence 8877665
No 67
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.7e-26 Score=271.61 Aligned_cols=249 Identities=20% Similarity=0.311 Sum_probs=214.7
Q ss_pred cccccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEE
Q 001162 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (1134)
Q Consensus 548 ~~~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v 627 (1134)
....+|.++.|.++.++++.+.+..+.. +..|..+|..-|+|+||+||||||||+|||++|.+.+ .++..+
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~---p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~------VPFf~i 214 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKN---PKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG------VPFFSI 214 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhC---chhhHhcccccccceeEecCCCCCcHHHHHHHhcccC------CCceec
Confidence 3556788999999999999887766664 4578899999999999999999999999999999988 899999
Q ss_pred ecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCC
Q 001162 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1134)
Q Consensus 628 ~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1134)
+.+++....++.-..+++++|.+|+.++|||+||||+|.+..++....+. ..+...+.+++|+..||.+....
T Consensus 215 SGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~Gg-gnderEQTLNQlLvEmDGF~~~~------ 287 (596)
T COG0465 215 SGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGG-GNDEREQTLNQLLVEMDGFGGNE------ 287 (596)
T ss_pred cchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCC-CchHHHHHHHHHHhhhccCCCCC------
Confidence 99999988888888999999999999999999999999998766544333 44566688889999999987432
Q ss_pred CcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHH
Q 001162 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (1134)
Q Consensus 708 ~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~ 787 (1134)
+|+++++||+++-+|++|+|+|||++.+.++.||...|.+|++.++....+. .+-.+..+|..|.||+++|+.+++..
T Consensus 288 -gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpGfsGAdL~nl~NE 365 (596)
T COG0465 288 -GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIARGTPGFSGADLANLLNE 365 (596)
T ss_pred -ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCCcccchHhhhHHH
Confidence 5999999999999999999999999999999999999999999888776654 33346779999999999999999999
Q ss_pred HHHHHhcccccCCCccccccccccchhhhHhhhhcccc
Q 001162 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1134)
Q Consensus 788 a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P 825 (1134)
|...+.++ ....+++.||..|......
T Consensus 366 Aal~aar~-----------n~~~i~~~~i~ea~drv~~ 392 (596)
T COG0465 366 AALLAARR-----------NKKEITMRDIEEAIDRVIA 392 (596)
T ss_pred HHHHHHHh-----------cCeeEeccchHHHHHHHhc
Confidence 99888876 2356889999998877654
No 68
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.94 E-value=5e-26 Score=275.18 Aligned_cols=247 Identities=21% Similarity=0.329 Sum_probs=200.9
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
..+|++++|.+..++++.+.+..+. .+..+...+..+|+++|||||||||||++++++|++++ .+++.+++
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~---~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~------~~~~~i~~ 121 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLK---NPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG------VPFFSISG 121 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHH---CHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC------CCeeeccH
Confidence 4568899999999988887655433 45577888899999999999999999999999999987 77888999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
+.+...+.+...+.++.+|..+....|+||||||+|.+++.+...... .........+.|+..+|.+... .+
T Consensus 122 ~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~-~~~~~~~~~~~lL~~~d~~~~~-------~~ 193 (495)
T TIGR01241 122 SDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGG-GNDEREQTLNQLLVEMDGFGTN-------TG 193 (495)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCC-ccHHHHHHHHHHHhhhccccCC-------CC
Confidence 888776667777889999999999999999999999998654432111 1223345666677777766432 25
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
++||++||.++.+|++++|+|||+..++++.|+.++|.+|++.++....+. .+..+..++..+.||+++|+..+|++|.
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~eA~ 272 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLNEAA 272 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999988765443 4456889999999999999999999998
Q ss_pred HHHhcccccCCCccccccccccchhhhHhhhhcccc
Q 001162 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1134)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P 825 (1134)
..+..+ ....++.+||..|+.....
T Consensus 273 ~~a~~~-----------~~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 273 LLAARK-----------NKTEITMNDIEEAIDRVIA 297 (495)
T ss_pred HHHHHc-----------CCCCCCHHHHHHHHHHHhc
Confidence 766543 2246899999999987654
No 69
>CHL00176 ftsH cell division protein; Validated
Probab=99.93 E-value=1.5e-25 Score=273.70 Aligned_cols=246 Identities=20% Similarity=0.315 Sum_probs=200.6
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
..+|.+++|.+..++++.+.+..+. .+..|..++...|+++||+||||||||++|+++|.+++ .++++++|
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~lk---~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~------~p~i~is~ 249 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSFLK---KPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE------VPFFSISG 249 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHHHh---CHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC------CCeeeccH
Confidence 3568899999999888877655543 34567888899999999999999999999999999987 78899999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
+.+.....+.....++.+|..+..+.|+||||||+|.+...+....+. ........+..|+..+|.+... .+
T Consensus 250 s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~-~~~e~~~~L~~LL~~~dg~~~~-------~~ 321 (638)
T CHL00176 250 SEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGG-GNDEREQTLNQLLTEMDGFKGN-------KG 321 (638)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCC-CcHHHHHHHHHHHhhhccccCC-------CC
Confidence 988766666666788999999999999999999999998654432222 2233445666677777765432 25
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
+++|++||.++.+|++++|+|||++++.++.|+.++|.+||+.++....+ ..+..+..+|..|.||+++||+.++++|+
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvneAa 400 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLNEAA 400 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999886432 34557899999999999999999999998
Q ss_pred HHHhcccccCCCccccccccccchhhhHhhhhccc
Q 001162 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (1134)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~ 824 (1134)
..+..+ ....++.+||..|+..+.
T Consensus 401 l~a~r~-----------~~~~It~~dl~~Ai~rv~ 424 (638)
T CHL00176 401 ILTARR-----------KKATITMKEIDTAIDRVI 424 (638)
T ss_pred HHHHHh-----------CCCCcCHHHHHHHHHHHH
Confidence 776544 235689999999987754
No 70
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.93 E-value=2.9e-25 Score=258.75 Aligned_cols=246 Identities=24% Similarity=0.340 Sum_probs=195.5
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
...+.+++|++.+++++.+.+...+. .+..+..+|+.+|.++|||||||||||++|+++|+.++ .+++.+.+
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~--~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~------~~~~~v~~ 189 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLK--HPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN------ATFIRVVG 189 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhc--CHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC------CCEEecch
Confidence 34567999999999999998865432 46788899999999999999999999999999999987 56777777
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
..+...+.+.....++.+|..+....|+||||||+|.+...+.+....... .....+..++..++.+... ++
T Consensus 190 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~-~~~~~l~~ll~~ld~~~~~-------~~ 261 (364)
T TIGR01242 190 SELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDR-EVQRTLMQLLAELDGFDPR-------GN 261 (364)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccH-HHHHHHHHHHHHhhCCCCC-------CC
Confidence 777777777777888999999999999999999999998654332222222 2223333344444443221 25
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
+.+|+|||.++.+++++++++||+..++|+.|+.++|.+|++.++.+..+. .+..+..++..|+||+++|+..+|+.|.
T Consensus 262 v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~sg~dl~~l~~~A~ 340 (364)
T TIGR01242 262 VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGASGADLKAICTEAG 340 (364)
T ss_pred EEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999887654332 2235889999999999999999999999
Q ss_pred HHHhcccccCCCccccccccccchhhhHhhhhcc
Q 001162 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1134)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1134)
+.|+.+ ....++.+||..|+..+
T Consensus 341 ~~a~~~-----------~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 341 MFAIRE-----------ERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHHh-----------CCCccCHHHHHHHHHHh
Confidence 988765 23568999999988653
No 71
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.93 E-value=6.5e-25 Score=259.70 Aligned_cols=194 Identities=20% Similarity=0.311 Sum_probs=156.3
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc----eeeEEEE
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVF 626 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~----~~~~~~~ 626 (1134)
.++.+|+|++.+++++.+.+...+. .+.+|..+|+++|+++|||||||||||++++++|+++..... ....++.
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~--~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFL--HPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhh--CHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 4578999999999999998865332 577899999999999999999999999999999999864311 1233445
Q ss_pred EecccccccchhhHHHHHHHHHHHHhhc----CCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccc
Q 001162 627 VCCSRLSLEKGPIIRQALSNFISEALDH----APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRK 702 (1134)
Q Consensus 627 v~~s~l~~~~~~~~~~~l~~~f~~a~~~----~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~ 702 (1134)
+..+.+...+.++..+.++.+|+.+... .|+||||||+|.+++.++... +.+....+...|+..+|.+...
T Consensus 257 v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~---s~d~e~~il~~LL~~LDgl~~~-- 331 (512)
T TIGR03689 257 IKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV---SSDVETTVVPQLLSELDGVESL-- 331 (512)
T ss_pred ccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc---cchHHHHHHHHHHHHhcccccC--
Confidence 6666777778888888889999887653 699999999999986553221 1223346677788888876432
Q ss_pred cccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhh
Q 001162 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR 756 (1134)
Q Consensus 703 ~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~ 756 (1134)
+++++|++||.++.||++++|+|||+.+|+|+.|+.++|.+||+.++..
T Consensus 332 -----~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 332 -----DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred -----CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 2599999999999999999999999999999999999999999998864
No 72
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.93 E-value=2.6e-25 Score=281.98 Aligned_cols=215 Identities=16% Similarity=0.174 Sum_probs=172.4
Q ss_pred hhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccc------------------------
Q 001162 581 WFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK------------------------ 636 (1134)
Q Consensus 581 ~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~------------------------ 636 (1134)
...++|+.+|+||||+||||||||+|||++|.+.+ ++++.++++++...+
T Consensus 1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~------VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~ 1694 (2281)
T CHL00206 1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSY------VPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDID 1694 (2281)
T ss_pred HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcC------CceEEEEHHHHhhcccccccccccccccccccccccccc
Confidence 45678899999999999999999999999999987 889999988876422
Q ss_pred -----------------hhh--HHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q 001162 637 -----------------GPI--IRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1134)
Q Consensus 637 -----------------~~~--~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~ 697 (1134)
.+. -...++.+|+.|+..+||||||||||.+... + . . ...+.+|+..|++.
T Consensus 1695 ~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~--d-s-----~--~ltL~qLLneLDg~ 1764 (2281)
T CHL00206 1695 RDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN--E-S-----N--YLSLGLLVNSLSRD 1764 (2281)
T ss_pred cccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC--c-c-----c--eehHHHHHHHhccc
Confidence 011 1234889999999999999999999999743 1 0 0 12256666777754
Q ss_pred ccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCH--HHHHHHhhhcCC
Q 001162 698 GEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSD--EILLDVASKCDG 775 (1134)
Q Consensus 698 ~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~--~~l~~la~~teG 775 (1134)
... +...+|+||||||.|+.+||||+|||||++.|.++.|+..+|.+++..+...+++.+.+ ..+..+|..|.|
T Consensus 1765 ~~~----~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~G 1840 (2281)
T CHL00206 1765 CER----CSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMG 1840 (2281)
T ss_pred ccc----CCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCC
Confidence 321 12236999999999999999999999999999999999999999988665444554443 247899999999
Q ss_pred CChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhccccc
Q 001162 776 YDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1134)
Q Consensus 776 ~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~ 826 (1134)
|+|+||.++|++|+..|+.+ .+..++.++|..|+.+.+..
T Consensus 1841 fSGADLanLvNEAaliAirq-----------~ks~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1841 SNARDLVALTNEALSISITQ-----------KKSIIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred CCHHHHHHHHHHHHHHHHHc-----------CCCccCHHHHHHHHHHHHhh
Confidence 99999999999999999876 33568999999999887654
No 73
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.5e-24 Score=231.45 Aligned_cols=244 Identities=19% Similarity=0.298 Sum_probs=194.8
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s 630 (1134)
.+|++++|...++.++.+.+.. ....+.+|...|+.+|.+++||||||+|||.+|+++|..++ +.++.+..+
T Consensus 129 ~s~~~~ggl~~qirelre~iel--pl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg------~nfl~v~ss 200 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELREVIEL--PLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMG------VNFLKVVSS 200 (388)
T ss_pred cCHHHhCChHHHHHHHHhheEe--eccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcC------CceEEeeHh
Confidence 4578899999999998887644 33467799999999999999999999999999999999998 888999999
Q ss_pred cccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcE
Q 001162 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1134)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1134)
.+...+.++..+.|++.|..|..+.|||+|+||+|.+.+.+ ..++. ...+.+...|+++++.+...+ ..+.|
T Consensus 201 ~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr-~se~T---s~dreiqrTLMeLlnqmdgfd----~l~rV 272 (388)
T KOG0651|consen 201 ALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRR-FSEGT---SSDREIQRTLMELLNQMDGFD----TLHRV 272 (388)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEE-ecccc---chhHHHHHHHHHHHHhhccch----hcccc
Confidence 99999999999999999999999999999999999998755 33332 233456666666666544322 23469
Q ss_pred EEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHH
Q 001162 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 711 ~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~ 790 (1134)
-+|+|+|+++.|+|+|.|+||+++.+++|.|+...|..|++.+.+.... ..+-..+.+.+..+||.++|+.+.|.+|-.
T Consensus 273 k~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~-~Geid~eaivK~~d~f~gad~rn~~tEag~ 351 (388)
T KOG0651|consen 273 KTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDF-HGEIDDEAILKLVDGFNGADLRNVCTEAGM 351 (388)
T ss_pred cEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccc-cccccHHHHHHHHhccChHHHhhhcccccc
Confidence 9999999999999999999999999999999999999998865443211 122236778888999999999999888765
Q ss_pred HHhcccccCCCccccccccccchhhhHhhhhc
Q 001162 791 AAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1134)
Q Consensus 791 ~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1134)
.+... ....+..|||.++...
T Consensus 352 Fa~~~-----------~~~~vl~Ed~~k~vrk 372 (388)
T KOG0651|consen 352 FAIPE-----------ERDEVLHEDFMKLVRK 372 (388)
T ss_pred cccch-----------hhHHHhHHHHHHHHHH
Confidence 44332 2234667888877654
No 74
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.91 E-value=1.9e-23 Score=258.36 Aligned_cols=249 Identities=21% Similarity=0.278 Sum_probs=199.8
Q ss_pred cccccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEE
Q 001162 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (1134)
Q Consensus 548 ~~~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v 627 (1134)
.+...+.++.|.+..++++.+.+..+. .+..+..++...|+++||+||||||||+++++++++++ .+++.+
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~~---~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~------~~f~~i 216 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYLR---EPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK------VPFFTI 216 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHhh---CHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC------CCEEEE
Confidence 345567888899888888777654433 23455667778888999999999999999999999987 778899
Q ss_pred ecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCC
Q 001162 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1134)
Q Consensus 628 ~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1134)
+++.+.....+.....++..|..+....|+||||||+|.+.+.+....+. .......+.+.|+..||.+....
T Consensus 217 s~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g-~~~~~~~~ln~lL~~mdg~~~~~------ 289 (644)
T PRK10733 217 SGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG-GHDEREQTLNQMLVEMDGFEGNE------ 289 (644)
T ss_pred ehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCC-CchHHHHHHHHHHHhhhcccCCC------
Confidence 99888776666667788999999999999999999999998655432222 22334466777777788765432
Q ss_pred CcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHH
Q 001162 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (1134)
Q Consensus 708 ~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~ 787 (1134)
.+++|++||+++.+|++++|+|||++++.++.|+.++|.+|++.++.+..+. .+..+..++..|.||+++||..+|++
T Consensus 290 -~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-~~~d~~~la~~t~G~sgadl~~l~~e 367 (644)
T PRK10733 290 -GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNE 367 (644)
T ss_pred -CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-CcCCHHHHHhhCCCCCHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999998765442 22347789999999999999999999
Q ss_pred HHHHHhcccccCCCccccccccccchhhhHhhhhcccc
Q 001162 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1134)
Q Consensus 788 a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P 825 (1134)
|...|..+ ....++.+||..|+..+.+
T Consensus 368 Aa~~a~r~-----------~~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 368 AALFAARG-----------NKRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred HHHHHHHc-----------CCCcccHHHHHHHHHHHhc
Confidence 99887654 2356899999999876654
No 75
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2e-23 Score=238.18 Aligned_cols=257 Identities=18% Similarity=0.246 Sum_probs=201.1
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
...+.++.|++.+...+.+.+.. ...++..|..+. .+++++||.||||+|||+|++++|.+.+ +.+..+++
T Consensus 149 ~v~~~di~gl~~~k~~l~e~vi~--p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~------atff~iSa 219 (428)
T KOG0740|consen 149 NVGWDDIAGLEDAKQSLKEAVIL--PLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESG------ATFFNISA 219 (428)
T ss_pred cccccCCcchhhHHHHhhhhhhh--cccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhc------ceEeeccH
Confidence 44567788888888888776533 333455666664 4457799999999999999999999988 88999999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
+.|.+++.|+.++.++.+|.-|+..+|+|+||||+|+++.++.+.++..+. ....++|+.. +.... ...++
T Consensus 220 ssLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~sr---r~ktefLiq~-~~~~s-----~~~dr 290 (428)
T KOG0740|consen 220 SSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSR---RLKTEFLLQF-DGKNS-----APDDR 290 (428)
T ss_pred HHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccch---hhhhHHHhhh-ccccC-----CCCCe
Confidence 999999999999999999999999999999999999999888655544322 2334444443 33221 12236
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
|++||+||.++.+|.+++| ||..++++|.|+.+.|..++..++...+..+.+..+..+++.|+||++.|+..+|..|.
T Consensus 291 vlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~ 368 (428)
T KOG0740|consen 291 VLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAA 368 (428)
T ss_pred EEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhh
Confidence 9999999999999999999 99999999999999999999999998877788889999999999999999999999987
Q ss_pred HHHhcccccC--CCccccccccccchhhhHhhhhccccc
Q 001162 790 HAAVGRYLHS--DSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1134)
Q Consensus 790 ~~a~~r~~~~--~~~~~~~~~~~lt~eDf~~Al~~~~P~ 826 (1134)
..-....... -..........++..||..+++.+.|.
T Consensus 369 ~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~ 407 (428)
T KOG0740|consen 369 MGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPS 407 (428)
T ss_pred cCchhhcccchhhhhcchhccCCCCcchHHHHHHhhccc
Confidence 5443322211 111222334557778888888776654
No 76
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.90 E-value=8.4e-23 Score=226.99 Aligned_cols=196 Identities=16% Similarity=0.183 Sum_probs=152.1
Q ss_pred cCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhh-----cCCeEE
Q 001162 585 YHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD-----HAPSIV 659 (1134)
Q Consensus 585 ~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~-----~~PsIL 659 (1134)
.++.+|.+++||||||||||++|+++|++++ +.++.+++.++.+.+.|+.++.++++|..|.. .+||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg------~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVL 216 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMG------IEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCL 216 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcC------CCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEE
Confidence 5689999999999999999999999999998 78999999999999999999999999999975 469999
Q ss_pred EEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc--cc---cccCCCcEEEEEecCCCCCCChhhccCCCccc
Q 001162 660 IFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK--RK---SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDF 734 (1134)
Q Consensus 660 ~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~--~~---~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~ 734 (1134)
||||||.+++.+... +.....+.+...|++++|..... .. .......|.||+|||+++.|+++|+|+|||+.
T Consensus 217 FIDEIDA~~g~r~~~---~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk 293 (413)
T PLN00020 217 FINDLDAGAGRFGTT---QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEK 293 (413)
T ss_pred EEehhhhcCCCCCCC---CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCc
Confidence 999999999765422 22222334457888888864210 00 01123469999999999999999999999998
Q ss_pred cccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCC----CChhhHHHHHHHHHHHHh
Q 001162 735 HVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG----YDAYDLEILVDRTVHAAV 793 (1134)
Q Consensus 735 ~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG----~s~~DL~~Lv~~a~~~a~ 793 (1134)
.+ ..|+.++|.+|++.+++..+ ++...+..++..+.| |.++--..+.++++..-+
T Consensus 294 ~i--~lPd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i 352 (413)
T PLN00020 294 FY--WAPTREDRIGVVHGIFRDDG--VSREDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWI 352 (413)
T ss_pred ee--CCCCHHHHHHHHHHHhccCC--CCHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHH
Confidence 65 57999999999999988754 456778888887766 334333444555444433
No 77
>CHL00181 cbbX CbbX; Provisional
Probab=99.88 E-value=8.1e-22 Score=220.99 Aligned_cols=216 Identities=18% Similarity=0.283 Sum_probs=168.8
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCC---CCceEEEcCCCCchhHHHHHHHHHc-------CCcEEEEeCcc
Q 001162 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRL---RSNVLLYGPPGCGKTHIVGAAAAAC-------SLRFISVKGPE 913 (1134)
Q Consensus 844 ~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~---~~~vLL~GppGtGKT~lA~alA~~~-------~~~~i~i~~~e 913 (1134)
.+++|++++|+++.+.+.+ ......+...|+.+ +.++||+||||||||++|+++|+.+ ..+++.+++++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4799999999999999877 44556666666543 4469999999999999999999875 23699999999
Q ss_pred cchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCc-
Q 001162 914 LLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL- 992 (1134)
Q Consensus 914 l~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~- 992 (1134)
+.+.|.|+++..++.+|+.|.. +||||||+|.+...++ ...+..++++.|+..|+. ..++++||++++...+
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~--~~~~~~vI~ag~~~~~~ 174 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMEN--QRDDLVVIFAGYKDRMD 174 (287)
T ss_pred HHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCC--ccchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHH
Confidence 9999999999888999998754 4999999999975432 234567899999999974 3356778888764322
Q ss_pred ----cchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHh------ccCCc-HHHHHHHHHHHHH
Q 001162 993 ----LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHM------TEGFS-GADLQALLSDAQL 1060 (1134)
Q Consensus 993 ----ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~------t~g~s-g~dl~~l~~~A~~ 1060 (1134)
++|++.+ ||+..|+|++|+.+++.+|++.++++.... .+.....+... ...|. ++++++++..|..
T Consensus 175 ~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 175 KFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARM 252 (287)
T ss_pred HHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 4699999 999999999999999999999999876533 11123333332 23455 8999999999999
Q ss_pred HHHHHHHhc
Q 001162 1061 SAVHEILNN 1069 (1134)
Q Consensus 1061 ~a~~~~~~~ 1069 (1134)
....|.+..
T Consensus 253 ~~~~r~~~~ 261 (287)
T CHL00181 253 RQANRIFES 261 (287)
T ss_pred HHHHHHHcC
Confidence 888887754
No 78
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.86 E-value=3.2e-21 Score=216.38 Aligned_cols=234 Identities=18% Similarity=0.242 Sum_probs=177.0
Q ss_pred CCCChhHHHHHHHHHHhcCCCchhHHhhCCCC---CCCceEEEcCCCCchhHHHHHHHHHcC-------CcEEEEeCccc
Q 001162 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLR---LRSNVLLYGPPGCGKTHIVGAAAAACS-------LRFISVKGPEL 914 (1134)
Q Consensus 845 ~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~---~~~~vLL~GppGtGKT~lA~alA~~~~-------~~~i~i~~~el 914 (1134)
+++|++++|+++.+.+.+ +..++.+.+.|+. +..++||+||||||||++|+++|+.+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999999887 5566777777765 345899999999999999999998762 37999999999
Q ss_pred chhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCC--Cc
Q 001162 915 LNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP--DL 992 (1134)
Q Consensus 915 ~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p--~~ 992 (1134)
.+.|.|+++..++++|+.|.+ +||||||+|.|.+.++ ......++.+.|+..|+. ...+++||++++.. +.
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMEN--QRDDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC--ccchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHHH
Confidence 999999999999999998755 5999999999965432 234567888999999974 34567788777643 33
Q ss_pred ---cchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhc------cC-CcHHHHHHHHHHHHHH
Q 001162 993 ---LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMT------EG-FSGADLQALLSDAQLS 1061 (1134)
Q Consensus 993 ---ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t------~g-~sg~dl~~l~~~A~~~ 1061 (1134)
++|++.+ ||+..|.||+|+.+++..|++.++++.... .......++.+. +. -+++++++++..|...
T Consensus 175 ~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 175 FFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred HHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 5899999 999999999999999999999999876432 122233444331 22 2389999999999988
Q ss_pred HHHHHHhccC-CCCCCCcccccHHHHHH
Q 001162 1062 AVHEILNNID-SNEPGKMPVITDALLKS 1088 (1134)
Q Consensus 1062 a~~~~~~~~~-~~~~~~~~~it~e~l~~ 1088 (1134)
...|...... .....+-..|+.+|+..
T Consensus 253 ~~~r~~~~~~~~~~~~~~~~~~~~d~~~ 280 (284)
T TIGR02880 253 QANRLFCDLDRVLDKSDLETIDPEDLLA 280 (284)
T ss_pred HHHHHhcCcCCCCCHHHHhCCCHHHHhh
Confidence 8777765322 11122234556666544
No 79
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.85 E-value=6.4e-21 Score=212.26 Aligned_cols=217 Identities=17% Similarity=0.230 Sum_probs=162.4
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCC---CCCceEEEcCCCCchhHHHHHHHHHc-------CCcEEEEeC
Q 001162 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLR---LRSNVLLYGPPGCGKTHIVGAAAAAC-------SLRFISVKG 911 (1134)
Q Consensus 842 ~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~---~~~~vLL~GppGtGKT~lA~alA~~~-------~~~~i~i~~ 911 (1134)
.+++++|++.+|+.+++.+.++... ......|+. ...++||+||||||||++|+++|+.+ ..+++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 3568999999999999998876444 222233433 34579999999999999999999874 347899999
Q ss_pred cccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCC
Q 001162 912 PELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPD 991 (1134)
Q Consensus 912 ~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~ 991 (1134)
+++.++|+|+++..++++|+.|.. +||||||+|.|... .........++.++..|+.. ...+++|++++..+
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~~---~VL~IDE~~~L~~~---~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~~ 154 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKALG---GVLFIDEAYSLARG---GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSDE 154 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhccC---CEEEEechhhhccC---CccchHHHHHHHHHHHHhcc--CCCEEEEecCCcch
Confidence 999999999999999999988854 59999999999642 22234567888999998743 34455555554322
Q ss_pred -----ccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhc---------cCCcHHHHHHHHH
Q 001162 992 -----LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMT---------EGFSGADLQALLS 1056 (1134)
Q Consensus 992 -----~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t---------~g~sg~dl~~l~~ 1056 (1134)
.++|++.+ ||+..+.||.|+.+++.+|++.+++..+.. ++..+..++... ..-+++.+++++.
T Consensus 155 ~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e 232 (261)
T TIGR02881 155 MDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIE 232 (261)
T ss_pred hHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 26889998 999999999999999999999998876542 122234443221 1235788889898
Q ss_pred HHHHHHHHHHHhc
Q 001162 1057 DAQLSAVHEILNN 1069 (1134)
Q Consensus 1057 ~A~~~a~~~~~~~ 1069 (1134)
.|......+.+..
T Consensus 233 ~a~~~~~~r~~~~ 245 (261)
T TIGR02881 233 KAIRRQAVRLLDK 245 (261)
T ss_pred HHHHHHHHHHhcc
Confidence 8888877776654
No 80
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=8.6e-21 Score=203.61 Aligned_cols=237 Identities=23% Similarity=0.326 Sum_probs=178.3
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCC-CCCCceEEEcCCCCchhHHHHHHHHHcC---------CcEEEEe
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPL-RLRSNVLLYGPPGCGKTHIVGAAAAACS---------LRFISVK 910 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~lA~alA~~~~---------~~~i~i~ 910 (1134)
.-|+.+.--..+|+.|..+....+.+.+.-.+..+ ...+-+||+||||||||+|++++|+.+. ..++++|
T Consensus 139 glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin 218 (423)
T KOG0744|consen 139 GLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN 218 (423)
T ss_pred hhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe
Confidence 35777777778999998888766555443222221 3445699999999999999999999884 4689999
Q ss_pred CcccchhcccccHHHHHHHHHHhhh-----cCCeEEEEcCcccccCCCCC----CCCcchhhHHHhHhhhcccccccccE
Q 001162 911 GPELLNKYIGASEQAVRDIFSKATA-----AAPCLLFFDEFDSIAPKRGH----DNTGVTDRVVNQFLTELDGVEVLTGV 981 (1134)
Q Consensus 911 ~~el~~~~~G~se~~v~~lf~~A~~-----~~P~VLfiDEid~l~~~r~~----~~~~~~~rv~~~lL~~ld~~~~~~~v 981 (1134)
+..+++||.+++.+.+..+|+.... +.--.++|||+++|+..|.. ......-|++|.+|++||.+...++|
T Consensus 219 shsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nv 298 (423)
T KOG0744|consen 219 SHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNV 298 (423)
T ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCE
Confidence 9999999999999999999988743 22246679999999987733 22344569999999999999999999
Q ss_pred EEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccC---CCC---------------CcccHHHHHHh-
Q 001162 982 FVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL---PLA---------------DDVDLEAIAHM- 1042 (1134)
Q Consensus 982 ~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~---~~~---------------~~vd~~~La~~- 1042 (1134)
++++|+|-.+.||.|+.. |-|-+.++++|+.+.|++|++.++.++ ++- .+.....++..
T Consensus 299 liL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~ 376 (423)
T KOG0744|consen 299 LILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELS 376 (423)
T ss_pred EEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHh
Confidence 999999999999999999 999999999999999999999876543 110 01112223333
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhh
Q 001162 1043 TEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASK 1092 (1134)
Q Consensus 1043 t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~ 1092 (1134)
+.|.||+-|+.+=--|.-. . .....++.++|..|+..
T Consensus 377 ~~gLSGRtlrkLP~Laha~----y---------~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 377 TVGLSGRTLRKLPLLAHAE----Y---------FRTFTVDLSNFLLALLE 413 (423)
T ss_pred hcCCccchHhhhhHHHHHh----c---------cCCCccChHHHHHHHHH
Confidence 4788998888753322111 0 12257888888887743
No 81
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.82 E-value=2.4e-20 Score=184.87 Aligned_cols=130 Identities=43% Similarity=0.724 Sum_probs=118.5
Q ss_pred eEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcccccHHHHHHHHHHhhhcC-CeEEEEcCcccccCCCCCCCCc
Q 001162 881 VLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAA-PCLLFFDEFDSIAPKRGHDNTG 959 (1134)
Q Consensus 881 vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~-P~VLfiDEid~l~~~r~~~~~~ 959 (1134)
+||+||||||||++|+.+|+.++.+++.++++++.+.+.+.+++.++.+|+.|+..+ |+||||||+|.+.+........
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 689999999999999999999999999999999999999999999999999998887 9999999999999887445666
Q ss_pred chhhHHHhHhhhccccccc-ccEEEEEecCCCCccchhhcCcCcccceeecCC
Q 001162 960 VTDRVVNQFLTELDGVEVL-TGVFVFAATSRPDLLDAALLRPGRLDRLLFCDF 1011 (1134)
Q Consensus 960 ~~~rv~~~lL~~ld~~~~~-~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~ 1011 (1134)
...++++.|+..|+..... .+++||+|||.++.++++++| +||++.++||.
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 7788999999999987765 569999999999999999998 89999999874
No 82
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.1e-19 Score=205.56 Aligned_cols=204 Identities=19% Similarity=0.294 Sum_probs=164.5
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhccc
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIG 920 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~G 920 (1134)
..|+.++--.+.|+.+.+-+..+++..+.+.+.|....+|.|||||||||||+++.|+|++++..++-++.++. +
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v-----~ 272 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEV-----K 272 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccc-----c
Confidence 67888888899999999999999999999999999999999999999999999999999999999999988774 3
Q ss_pred ccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCC---c----chhhHHHhHhhhcccccccc--cEEEEEecCCCC
Q 001162 921 ASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNT---G----VTDRVVNQFLTELDGVEVLT--GVFVFAATSRPD 991 (1134)
Q Consensus 921 ~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~---~----~~~rv~~~lL~~ld~~~~~~--~v~vIatTn~p~ 991 (1134)
...+ ++.++..+... +||+|.+||.-+..++.... + ...-.+..||..+||+-... --+||.|||.++
T Consensus 273 ~n~d-Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 273 LDSD-LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred CcHH-HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 3333 88998887655 69999999998764432211 1 12346888999999986544 577778999999
Q ss_pred ccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccC--CcHHHHHHH
Q 001162 992 LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEG--FSGADLQAL 1054 (1134)
Q Consensus 992 ~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g--~sg~dl~~l 1054 (1134)
.|||||+||||+|..|+++.-+.++-..++++++.--. +..-++++.+..++ .|+||++..
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHH
Confidence 99999999999999999999999999999999887532 11123333333322 689998753
No 83
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.79 E-value=8.4e-19 Score=195.30 Aligned_cols=223 Identities=18% Similarity=0.197 Sum_probs=158.7
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCC---CCceEEEEcCCCccHHHHHHHHHHHhccCCc-eeeEEEEE
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLP---LPGHILIHGPPGSGKTSLAKAVAKSLEHHKD-LVAHIVFV 627 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~---~p~~vLL~GppGtGKTtLaralA~~l~~~~~-~~~~~~~v 627 (1134)
.+++++|++.+++.+.+.+..... .......|.. ...++||+||||||||++|+++|+.+..... ...+++.+
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~---~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~ 80 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQI---NEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEV 80 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHH---HHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEe
Confidence 356889999988888776543321 1122233333 3457999999999999999999998743221 22467888
Q ss_pred ecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCC
Q 001162 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1134)
Q Consensus 628 ~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1134)
+|+++.+.+.+.....+.++|+.+. ++||||||+|.|.. ..+ ........+.|...++....
T Consensus 81 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~---~~~----~~~~~~~i~~Ll~~~e~~~~-------- 142 (261)
T TIGR02881 81 ERADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLAR---GGE----KDFGKEAIDTLVKGMEDNRN-------- 142 (261)
T ss_pred cHHHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhcc---CCc----cchHHHHHHHHHHHHhccCC--------
Confidence 9999988888888788888887763 57999999999852 111 11112345566666665421
Q ss_pred CcEEEEEecCCCC-----CCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhh---------c
Q 001162 708 GPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK---------C 773 (1134)
Q Consensus 708 ~~V~vIattn~~~-----~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~---------t 773 (1134)
.+++|+++...+ .++|+|++ ||+..++|++|+.+++.+|++.++...+..++++.+..++.. .
T Consensus 143 -~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~ 219 (261)
T TIGR02881 143 -EFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSR 219 (261)
T ss_pred -CEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCC
Confidence 366666654422 36789998 998899999999999999999999888888888887666432 1
Q ss_pred CCCChhhHHHHHHHHHHHHhccccc
Q 001162 774 DGYDAYDLEILVDRTVHAAVGRYLH 798 (1134)
Q Consensus 774 eG~s~~DL~~Lv~~a~~~a~~r~~~ 798 (1134)
...+++.+.++++.|+.....|...
T Consensus 220 ~~gn~R~~~n~~e~a~~~~~~r~~~ 244 (261)
T TIGR02881 220 EFSNARYVRNIIEKAIRRQAVRLLD 244 (261)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhc
Confidence 2346888999999998888777653
No 84
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.1e-18 Score=191.71 Aligned_cols=210 Identities=24% Similarity=0.369 Sum_probs=155.1
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhccc
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIG 920 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~G 920 (1134)
..+++++-...+.+.+.+....-.. . .....+-+++|||||||||||++|+-||...|+.+-.+.+.++.- .-.
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaN-T----K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~ 425 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATAN-T----KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGA 425 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhcc-c----ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cch
Confidence 3467777667777777665442111 0 011124458999999999999999999999999999999988643 112
Q ss_pred ccHHHHHHHHHHhhhcC-CeEEEEcCcccccCCCCCCC-CcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhc
Q 001162 921 ASEQAVRDIFSKATAAA-PCLLFFDEFDSIAPKRGHDN-TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALL 998 (1134)
Q Consensus 921 ~se~~v~~lf~~A~~~~-P~VLfiDEid~l~~~r~~~~-~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~all 998 (1134)
+.-..++++|+.|+... .-+|||||+|++..+|.... ++..+..+|.||---. .....++++.+||+|..+|.|+-
T Consensus 426 qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~ 503 (630)
T KOG0742|consen 426 QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVN 503 (630)
T ss_pred HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHH
Confidence 33467899999996533 45899999999998876543 4445667888875432 23345777789999999999999
Q ss_pred CcCcccceeecCCCCHHHHHHHHHHHHccCC------------------------CCC---cccHHHHHHhccCCcHHHH
Q 001162 999 RPGRLDRLLFCDFPSPRERLDILKVISRKLP------------------------LAD---DVDLEAIAHMTEGFSGADL 1051 (1134)
Q Consensus 999 rpgRfd~~i~~~~p~~~er~~Il~~~~~~~~------------------------~~~---~vd~~~La~~t~g~sg~dl 1051 (1134)
. |+|.+++||+|..++|..++..++.+.- +.. +--+.+.|+.|+||||++|
T Consensus 504 D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREi 581 (630)
T KOG0742|consen 504 D--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREI 581 (630)
T ss_pred h--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHH
Confidence 9 9999999999999999999998875431 111 1115677899999999999
Q ss_pred HHHHHHHHH
Q 001162 1052 QALLSDAQL 1060 (1134)
Q Consensus 1052 ~~l~~~A~~ 1060 (1134)
..|+-..+-
T Consensus 582 akLva~vQA 590 (630)
T KOG0742|consen 582 AKLVASVQA 590 (630)
T ss_pred HHHHHHHHH
Confidence 998765443
No 85
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.76 E-value=6.4e-18 Score=177.64 Aligned_cols=185 Identities=25% Similarity=0.360 Sum_probs=124.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcc
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~ 919 (1134)
+..+++++|+++++..+.-++...... -.+..++|||||||+|||+||+.+|++++.+|...+++.+-
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~---- 87 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE---- 87 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC------
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh----
Confidence 468999999999999987766532111 12335899999999999999999999999999999987542
Q ss_pred cccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc----------------ccccEEE
Q 001162 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE----------------VLTGVFV 983 (1134)
Q Consensus 920 G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~----------------~~~~v~v 983 (1134)
....+..++...+. ..||||||||++ ...+...|+..|+... ...++.+
T Consensus 88 --k~~dl~~il~~l~~--~~ILFIDEIHRl-----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 88 --KAGDLAAILTNLKE--GDILFIDEIHRL-----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp --SCHHHHHHHHT--T--T-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred --hHHHHHHHHHhcCC--CcEEEEechhhc-----------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 12334455554433 469999999998 3445566676676421 1235889
Q ss_pred EEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHH
Q 001162 984 FAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQAL 1054 (1134)
Q Consensus 984 IatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l 1054 (1134)
||||.+..++.++|+. ||.-...+..|+.++..+|++.-.+.+++. ++....++|+++.| +++-...+
T Consensus 153 igATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrl 221 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRL 221 (233)
T ss_dssp EEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHH
T ss_pred eeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHH
Confidence 9999999999999999 999999999999999999999888877765 33346778888886 44443333
No 86
>CHL00181 cbbX CbbX; Provisional
Probab=99.76 E-value=8.8e-18 Score=188.53 Aligned_cols=222 Identities=16% Similarity=0.167 Sum_probs=156.4
Q ss_pred ccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCC---ceEEEEcCCCccHHHHHHHHHHHhccCCc-eeeEEEEEecc
Q 001162 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLP---GHILIHGPPGSGKTSLAKAVAKSLEHHKD-LVAHIVFVCCS 630 (1134)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p---~~vLL~GppGtGKTtLaralA~~l~~~~~-~~~~~~~v~~s 630 (1134)
+++|++.++++|.+.+..+. ....+...|..++ .++||+||||||||++|+++|+.+..... ...++++++++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~---~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLL---IDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHH---HHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 68899998888777553322 1234445555443 35999999999999999999998753222 12457888888
Q ss_pred cccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcE
Q 001162 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1134)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1134)
.+.+.+.+........+|+.+ .++||||||+|.+...+. .. .........|...|+... +.+
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~--~~----~~~~e~~~~L~~~me~~~---------~~~ 162 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPDN--ER----DYGSEAIEILLQVMENQR---------DDL 162 (287)
T ss_pred HHHHHHhccchHHHHHHHHHc---cCCEEEEEccchhccCCC--cc----chHHHHHHHHHHHHhcCC---------CCE
Confidence 887766665555566677765 347999999999863211 11 112355667777776532 147
Q ss_pred EEEEecCCCC-----CCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhh------cCCC-Ch
Q 001162 711 AFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK------CDGY-DA 778 (1134)
Q Consensus 711 ~vIattn~~~-----~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~------teG~-s~ 778 (1134)
+||++++... .++|+|++ ||+.+++|++|+.+++.+|+..++.+.+..++++....+... .+.| ++
T Consensus 163 ~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNa 240 (287)
T CHL00181 163 VVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANA 240 (287)
T ss_pred EEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccH
Confidence 7777776422 34689999 999999999999999999999999988877777754443332 1333 48
Q ss_pred hhHHHHHHHHHHHHhcccccC
Q 001162 779 YDLEILVDRTVHAAVGRYLHS 799 (1134)
Q Consensus 779 ~DL~~Lv~~a~~~a~~r~~~~ 799 (1134)
++++++++++......|....
T Consensus 241 R~vrn~ve~~~~~~~~r~~~~ 261 (287)
T CHL00181 241 RSVRNALDRARMRQANRIFES 261 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 999999999998888887643
No 87
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.76 E-value=9.7e-18 Score=188.34 Aligned_cols=221 Identities=17% Similarity=0.168 Sum_probs=159.5
Q ss_pred ccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCC---CceEEEEcCCCccHHHHHHHHHHHhccCCce-eeEEEEEecc
Q 001162 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPL---PGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-VAHIVFVCCS 630 (1134)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~---p~~vLL~GppGtGKTtLaralA~~l~~~~~~-~~~~~~v~~s 630 (1134)
+++|++.+++.+.+...... ....+...|+.+ ..++||+||||||||++|+++|+.+...... ..+++++++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~---~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~ 99 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLL---VERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRD 99 (284)
T ss_pred hccCHHHHHHHHHHHHHHHH---HHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHH
Confidence 57889988888777554422 233455556553 3479999999999999999999988543221 2368888988
Q ss_pred cccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcE
Q 001162 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1134)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1134)
.+.+...+.....+..+|+.+ .+++|||||+|.+.+.+. + ........+.|...|+... ..+
T Consensus 100 ~l~~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~--~----~~~~~~~~~~Ll~~le~~~---------~~~ 161 (284)
T TIGR02880 100 DLVGQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYRPDN--E----RDYGQEAIEILLQVMENQR---------DDL 161 (284)
T ss_pred HHhHhhcccchHHHHHHHHHc---cCcEEEEechhhhccCCC--c----cchHHHHHHHHHHHHhcCC---------CCE
Confidence 887666665555667777776 347999999999863211 1 1122355566777776432 147
Q ss_pred EEEEecCCC--C---CCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhh-------cCCCCh
Q 001162 711 AFVASAQSL--E---KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK-------CDGYDA 778 (1134)
Q Consensus 711 ~vIattn~~--~---~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~-------teG~s~ 778 (1134)
++|++++.. + .++|+|++ ||...++||+|+.+++.+|++.++.+....++++.+..++.. ..-.++
T Consensus 162 ~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~ 239 (284)
T TIGR02880 162 VVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANA 239 (284)
T ss_pred EEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChH
Confidence 777776642 2 24799999 999999999999999999999999987777888877666554 223468
Q ss_pred hhHHHHHHHHHHHHhccccc
Q 001162 779 YDLEILVDRTVHAAVGRYLH 798 (1134)
Q Consensus 779 ~DL~~Lv~~a~~~a~~r~~~ 798 (1134)
+++++++++++.....|...
T Consensus 240 R~lrn~ve~~~~~~~~r~~~ 259 (284)
T TIGR02880 240 RSIRNAIDRARLRQANRLFC 259 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999888888653
No 88
>PF09263 PEX-2N: Peroxisome biogenesis factor 1, N-terminal ; InterPro: IPR015343 This domain adopts a Cdc48 domain 2-like fold, with a beta-alpha-beta(3) arrangement. It has been suggested that this domain may be involved in interactions with ubiquitin, ubiquitin-like protein modifiers, or ubiquitin-like domains, such as Ubx. Furthermore, the domain may possess a putative adaptor or substrate binding site, allowing for peroxisomal biogenesis, membrane fusion and protein translocation []. ; PDB: 1WLF_A.
Probab=99.74 E-value=3.7e-18 Score=146.74 Aligned_cols=80 Identities=26% Similarity=0.430 Sum_probs=55.0
Q ss_pred eEEEEeCCcccceeeCCHHHHHHHhcccccCCCCceEEEEEEeCCCCeEEEEecCccC----CCCceEecHHHHhhcCCC
Q 001162 3 LEVRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQRWVVAWSGATS----SSSFIEVARQFAECISLA 78 (1134)
Q Consensus 3 ~~v~~~~~~~~~~v~lp~~l~~~l~~~~~~~~~~q~~~~e~~~~~~~~~~~~w~g~~s----~~~~iei~~~~a~~~gl~ 78 (1134)
+.|.|++ .||||++||++|++.|. +.|+++||++|+++.++|++|++.-+ +.+.+|||++||++|||+
T Consensus 4 vtv~f~n-~kdCFL~Lp~~l~~~L~-------L~q~qAvEvsWg~~~pvfLSW~e~r~~~~~~en~~EinrqlgeKLGl~ 75 (87)
T PF09263_consen 4 VTVVFNN-AKDCFLHLPSRLASQLH-------LQQNQAVEVSWGHQSPVFLSWVEGRSFSDQGENVAEINRQLGEKLGLS 75 (87)
T ss_dssp EEEEEE---SSS-EEE-HHHHHHTT---------TT--EEEESSS---EEE-EEE-SS-------EEEEEHHHHHHTT--
T ss_pred EEEEecC-CcceEEECCHHHHHHHH-------HhhCceEEEEeCCCCcEEEEeecccccCCccccHHHHHHHHHHhhCCC
Confidence 5688888 99999999999999999 46899999999997799999998543 348999999999999999
Q ss_pred CCCEEEEEEeeC
Q 001162 79 DHTIVQVRVVSN 90 (1134)
Q Consensus 79 ~~~~v~~~~~~~ 90 (1134)
||++|++++|.+
T Consensus 76 dGeQvfLrpCs~ 87 (87)
T PF09263_consen 76 DGEQVFLRPCSH 87 (87)
T ss_dssp TT-EEEEEE-S-
T ss_pred cCCeEeeeeCCC
Confidence 999999999863
No 89
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.72 E-value=8.7e-17 Score=179.17 Aligned_cols=227 Identities=21% Similarity=0.307 Sum_probs=152.1
Q ss_pred CCCCCCCCChhHHH---HHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccch
Q 001162 840 RSGWDDVGGLTDIQ---NAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 916 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k---~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~ 916 (1134)
+..+++++|++.+. ..|..+++.. ...+++||||||||||++|++||...+.+|..+++..
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~~-------------~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEAG-------------HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhcC-------------CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 46788899988765 3444444421 2247999999999999999999999999999999854
Q ss_pred hcccccHHHHHHHHHHhhhcC----CeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCc
Q 001162 917 KYIGASEQAVRDIFSKATAAA----PCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL 992 (1134)
Q Consensus 917 ~~~G~se~~v~~lf~~A~~~~----P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ 992 (1134)
..-+.+|.+|++|+... .-|||+||||++... -.+.||-.| +.+.-++|-+||..|.+
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~-----------QQD~lLp~v---E~G~iilIGATTENPsF 145 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA-----------QQDALLPHV---ENGTIILIGATTENPSF 145 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh-----------hhhhhhhhh---cCCeEEEEeccCCCCCe
Confidence 45678999999994432 469999999998432 223455444 55666677777778877
Q ss_pred -cchhhcCcCcccceeecCCCCHHHHHHHHHHHH--ccCCCC------CcccHHHHHHhccCCcHHHHHHHHHHHHHHHH
Q 001162 993 -LDAALLRPGRLDRLLFCDFPSPRERLDILKVIS--RKLPLA------DDVDLEAIAHMTEGFSGADLQALLSDAQLSAV 1063 (1134)
Q Consensus 993 -ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~--~~~~~~------~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~ 1063 (1134)
+++||++++ .++.+.+.+.++...+++.-+ ...++. ++...+.|+..+ .+|.+.+++..
T Consensus 146 ~ln~ALlSR~---~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s----~GD~R~aLN~L----- 213 (436)
T COG2256 146 ELNPALLSRA---RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLS----NGDARRALNLL----- 213 (436)
T ss_pred eecHHHhhhh---heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhc----CchHHHHHHHH-----
Confidence 999999954 467888999999999998733 233333 122344455544 45666655522
Q ss_pred HHHHhccCCCCCCCcccccHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhcc-cch
Q 001162 1064 HEILNNIDSNEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDS-KKS 1118 (1134)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~it~e~l~~al~~~~ps~~~~~~~~~~~~~~~f~~~-r~~ 1118 (1134)
+......+. +. .++.++++..+.+..+.-+.. -..++...+.|.++ |++
T Consensus 214 E~~~~~~~~----~~-~~~~~~l~~~l~~~~~~~Dk~-gD~hYdliSA~hKSvRGS 263 (436)
T COG2256 214 ELAALSAEP----DE-VLILELLEEILQRRSARFDKD-GDAHYDLISALHKSVRGS 263 (436)
T ss_pred HHHHHhcCC----Cc-ccCHHHHHHHHhhhhhccCCC-cchHHHHHHHHHHhhccC
Confidence 222211111 11 445888998887765543333 34466677777776 444
No 90
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.71 E-value=3.5e-16 Score=166.78 Aligned_cols=240 Identities=20% Similarity=0.283 Sum_probs=173.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcc
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~ 919 (1134)
+..|++.+|++++|+.|.-++....... ...-|+|||||||.|||+||..+|+++|.++-..+++-+-
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le---- 89 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE---- 89 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc----
Confidence 4689999999999999998887543222 2345999999999999999999999999999999988763
Q ss_pred cccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc----------------ccccEEE
Q 001162 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE----------------VLTGVFV 983 (1134)
Q Consensus 920 G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~----------------~~~~v~v 983 (1134)
....+-.++.....+ +||||||||++.+. +-.-|.-.|+.++ ....+.+
T Consensus 90 --K~gDlaaiLt~Le~~--DVLFIDEIHrl~~~-----------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 90 --KPGDLAAILTNLEEG--DVLFIDEIHRLSPA-----------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred --ChhhHHHHHhcCCcC--CeEEEehhhhcChh-----------HHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 334455666555444 69999999999653 2223334454432 1245889
Q ss_pred EEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHHH
Q 001162 984 FAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSA 1062 (1134)
Q Consensus 984 IatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a 1062 (1134)
||||.+..+|...|+. ||.....+..|+.++...|++.-.+.+++. .+....++|+++.|-. +=-..+++.
T Consensus 155 IGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTP-RIAnRLLrR----- 226 (332)
T COG2255 155 IGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTP-RIANRLLRR----- 226 (332)
T ss_pred eeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCc-HHHHHHHHH-----
Confidence 9999999999999998 999999999999999999999988887765 3344678899988754 333334332
Q ss_pred HHHHHhccCCCCCCCcccccHHHHHHHHhhcCC---CCcHHHHHHHHHHHHHhhcccchhh
Q 001162 1063 VHEILNNIDSNEPGKMPVITDALLKSIASKARP---SVSEAEKLRLYSIYGQFLDSKKSVA 1120 (1134)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~it~e~l~~al~~~~p---s~~~~~~~~~~~~~~~f~~~r~~~~ 1120 (1134)
++..... .+...|+.+-..+|++...- -...-++.-+..+..+|...--|..
T Consensus 227 VRDfa~V------~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~ 281 (332)
T COG2255 227 VRDFAQV------KGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLD 281 (332)
T ss_pred HHHHHHH------hcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHH
Confidence 3332221 12346777777777765432 3344566678888888866554443
No 91
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.71 E-value=1.4e-16 Score=201.98 Aligned_cols=231 Identities=23% Similarity=0.268 Sum_probs=160.8
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccc--------
Q 001162 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-------- 915 (1134)
Q Consensus 844 ~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~-------- 915 (1134)
+++.|++++++.+.+++...... +...+.++||+||||||||++|+++|+.++.+|+.+++..+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 35889999999999877643211 111234799999999999999999999999999999876432
Q ss_pred -hhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccc-------------cccccE
Q 001162 916 -NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV-------------EVLTGV 981 (1134)
Q Consensus 916 -~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~-------------~~~~~v 981 (1134)
..|+|.....+.+.|..+....| ||||||||++.+....+ ..+.|+..||.. ....++
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-------PASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-------HHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 36788888888889988876666 89999999997642211 235566655521 112578
Q ss_pred EEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHH-----ccCCCC---CcccHHHHHHhcc----CCcHH
Q 001162 982 FVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVIS-----RKLPLA---DDVDLEAIAHMTE----GFSGA 1049 (1134)
Q Consensus 982 ~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~-----~~~~~~---~~vd~~~La~~t~----g~sg~ 1049 (1134)
+||+|||.++.++++|++ ||+ +|.|+.|+.+++..|++.++ +..++. -.++.+.+..... .+..+
T Consensus 465 ~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R 541 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVR 541 (775)
T ss_pred EEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCCh
Confidence 999999999999999999 995 78999999999999998765 222332 1344444444333 34456
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCC-CCCCcccccHHHHHHHHhh
Q 001162 1050 DLQALLSDAQLSAVHEILNNIDSN-EPGKMPVITDALLKSIASK 1092 (1134)
Q Consensus 1050 dl~~l~~~A~~~a~~~~~~~~~~~-~~~~~~~it~e~l~~al~~ 1092 (1134)
+|+..+......+..+.+...... .......|+.+++...+..
T Consensus 542 ~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg~ 585 (775)
T TIGR00763 542 NLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLGK 585 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcCc
Confidence 777766666666555544311111 1112357888888887753
No 92
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.71 E-value=6.9e-17 Score=160.03 Aligned_cols=130 Identities=30% Similarity=0.486 Sum_probs=111.2
Q ss_pred EEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcC-CeEEEEcccchhccCC
Q 001162 593 ILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHA-PSIVIFDNLDSIISSS 671 (1134)
Q Consensus 593 vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~-PsIL~IDEiD~L~~~~ 671 (1134)
|||+||||||||++++.+|+.++ .+++.+++..+.+...+...+.+..+|..+.... |+||||||+|.+.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~------~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG------FPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT------SEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC
T ss_pred CEEECcCCCCeeHHHHHHHhhcc------cccccccccccccccccccccccccccccccccccceeeeeccchhccccc
Confidence 69999999999999999999997 8899999999998888889999999999998887 9999999999998644
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCC
Q 001162 672 SDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLP 739 (1134)
Q Consensus 672 ~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~ 739 (1134)
..........+.+.|...++...... .++++|++||.++.+++.+.+ +||+..+++|
T Consensus 75 ----~~~~~~~~~~~~~~L~~~l~~~~~~~------~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~ 131 (132)
T PF00004_consen 75 ----QPSSSSFEQRLLNQLLSLLDNPSSKN------SRVIVIATTNSPDKIDPALLR-SRFDRRIEFP 131 (132)
T ss_dssp ----STSSSHHHHHHHHHHHHHHHTTTTTS------SSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-
T ss_pred ----ccccccccccccceeeeccccccccc------ccceeEEeeCChhhCCHhHHh-CCCcEEEEcC
Confidence 22234455677888888888766532 259999999999999999997 7999999886
No 93
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.70 E-value=8e-16 Score=177.16 Aligned_cols=237 Identities=24% Similarity=0.295 Sum_probs=166.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
.+..|++++|.++.++.+...+..... .-.++.++|||||||||||++|+++|++++..+..++++.+.
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~--- 88 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE--- 88 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc---
Confidence 346899999999999999887753211 113456899999999999999999999999998887776432
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc----------------ccccEE
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE----------------VLTGVF 982 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~----------------~~~~v~ 982 (1134)
....+..++... ..++||||||||.+... ..+.+...|+... ...++.
T Consensus 89 ---~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-----------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~ 152 (328)
T PRK00080 89 ---KPGDLAAILTNL--EEGDVLFIDEIHRLSPV-----------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFT 152 (328)
T ss_pred ---ChHHHHHHHHhc--ccCCEEEEecHhhcchH-----------HHHHHHHHHHhcceeeeeccCccccceeecCCCce
Confidence 223455555544 34579999999998432 1112233332211 113477
Q ss_pred EEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHH
Q 001162 983 VFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLS 1061 (1134)
Q Consensus 983 vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~ 1061 (1134)
+|++|+++..+++++++ ||+..+.|++|+.+++.+|++..+...++. ++..++.++..+.|.. +.+..+++.+...
T Consensus 153 li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~ 229 (328)
T PRK00080 153 LIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRDF 229 (328)
T ss_pred EEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHHH
Confidence 88999999999999988 999999999999999999999988776554 3334778888888754 6666666654444
Q ss_pred HHHHHHhccCCCCCCCcccccHHHHHHHHhhcCCC---CcHHHHHHHHHHHHHhhccc
Q 001162 1062 AVHEILNNIDSNEPGKMPVITDALLKSIASKARPS---VSEAEKLRLYSIYGQFLDSK 1116 (1134)
Q Consensus 1062 a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~~ps---~~~~~~~~~~~~~~~f~~~r 1116 (1134)
|..+ +...|+.+++..++...... .+..++.-+..+...|....
T Consensus 230 a~~~-----------~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~ 276 (328)
T PRK00080 230 AQVK-----------GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGP 276 (328)
T ss_pred HHHc-----------CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCc
Confidence 3322 22468999999999876443 34455665666777765543
No 94
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.68 E-value=1.6e-15 Score=173.00 Aligned_cols=231 Identities=20% Similarity=0.267 Sum_probs=156.5
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcccc
Q 001162 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGA 921 (1134)
Q Consensus 842 ~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~G~ 921 (1134)
.|++++|++++++.|...+...... ...+.+++|+||||||||++|+++|++++..+..+.++.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 5889999999999998877532111 123457999999999999999999999998887776553321
Q ss_pred cHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc----------------ccccEEEEE
Q 001162 922 SEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE----------------VLTGVFVFA 985 (1134)
Q Consensus 922 se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~----------------~~~~v~vIa 985 (1134)
...+...+... ..+.||||||+|.+.+. ..+.|+..|+... ....+.+|+
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~-----------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPA-----------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHH-----------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 12233333332 34579999999998532 2223333332211 123478889
Q ss_pred ecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHH
Q 001162 986 ATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVH 1064 (1134)
Q Consensus 986 tTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~ 1064 (1134)
+|+++..+++++++ ||...+.|++|+.+++.+|++..+...++. ++..++.+++.+.|+. +.+..++..+...|..
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~a~~ 211 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDFAQV 211 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHH
Confidence 99999999999998 998889999999999999999888765543 2334677888888755 5556667655433321
Q ss_pred HHHhccCCCCCCCcccccHHHHHHHHhhcCC---CCcHHHHHHHHHHHHHhh
Q 001162 1065 EILNNIDSNEPGKMPVITDALLKSIASKARP---SVSEAEKLRLYSIYGQFL 1113 (1134)
Q Consensus 1065 ~~~~~~~~~~~~~~~~it~e~l~~al~~~~p---s~~~~~~~~~~~~~~~f~ 1113 (1134)
. ....|+.+++..++..... ..+..++.-+..+...+.
T Consensus 212 ~-----------~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~ 252 (305)
T TIGR00635 212 R-----------GQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQ 252 (305)
T ss_pred c-----------CCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhC
Confidence 1 1245899999988876432 233444444555555553
No 95
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.68 E-value=8.5e-16 Score=161.71 Aligned_cols=195 Identities=16% Similarity=0.261 Sum_probs=127.6
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~ 631 (1134)
++++.+|.+..++.+.-.+..... ...+..|+|||||||+||||||+.+|++++ ..+..++...
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~----------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~------~~~~~~sg~~ 85 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKK----------RGEALDHMLFYGPPGLGKTTLARIIANELG------VNFKITSGPA 85 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHC----------TTS---EEEEESSTTSSHHHHHHHHHHHCT--------EEEEECCC
T ss_pred CHHHccCcHHHHhhhHHHHHHHHh----------cCCCcceEEEECCCccchhHHHHHHHhccC------CCeEeccchh
Confidence 466778888877765444433321 122346799999999999999999999998 5666666544
Q ss_pred ccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc-----cccc---
Q 001162 632 LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE-----KRKS--- 703 (1134)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~-----~~~~--- 703 (1134)
+.. .+++.. ++... ....||||||||.+- ....+.|+..|+.+.- ....
T Consensus 86 i~k--~~dl~~----il~~l--~~~~ILFIDEIHRln---------------k~~qe~LlpamEd~~idiiiG~g~~ar~ 142 (233)
T PF05496_consen 86 IEK--AGDLAA----ILTNL--KEGDILFIDEIHRLN---------------KAQQEILLPAMEDGKIDIIIGKGPNARS 142 (233)
T ss_dssp --S--CHHHHH----HHHT----TT-EEEECTCCC-----------------HHHHHHHHHHHHCSEEEEEBSSSSS-BE
T ss_pred hhh--HHHHHH----HHHhc--CCCcEEEEechhhcc---------------HHHHHHHHHHhccCeEEEEeccccccce
Confidence 322 233333 33332 346799999999984 2556778888875431 1100
Q ss_pred -ccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHH
Q 001162 704 -SCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE 782 (1134)
Q Consensus 704 -~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~ 782 (1134)
.....++.+|++|+....+.+.|+. ||....++..|+.++..+|++.-....++.++++...+||..+.| +|+=..
T Consensus 143 ~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAn 219 (233)
T PF05496_consen 143 IRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIAN 219 (233)
T ss_dssp EEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHH
T ss_pred eeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHH
Confidence 1112468999999999999999999 999888999999999999999888888889999999999999998 787666
Q ss_pred HHHHHH
Q 001162 783 ILVDRT 788 (1134)
Q Consensus 783 ~Lv~~a 788 (1134)
.+++++
T Consensus 220 rll~rv 225 (233)
T PF05496_consen 220 RLLRRV 225 (233)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 96
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.6e-16 Score=168.38 Aligned_cols=245 Identities=19% Similarity=0.220 Sum_probs=168.7
Q ss_pred ccccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCC-----CCCceEEEEcCCCccHHHHHHHHHHHhccC---Cce
Q 001162 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHL-----PLPGHILIHGPPGSGKTSLAKAVAKSLEHH---KDL 620 (1134)
Q Consensus 549 ~~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~-----~~p~~vLL~GppGtGKTtLaralA~~l~~~---~~~ 620 (1134)
|..-.++|+.-.+.+++++.+....+. |...+. ...+-+||+||||||||+|++++|+.|.-+ ...
T Consensus 137 F~glWEsLiyds~lK~~ll~Ya~s~l~------fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~ 210 (423)
T KOG0744|consen 137 FDGLWESLIYDSNLKERLLSYAASALL------FSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYY 210 (423)
T ss_pred hhhhHHHHhhcccHHHHHHHHHHHHHH------HHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccc
Confidence 344455666556677888887744331 333222 334569999999999999999999998622 233
Q ss_pred eeEEEEEecccccccchhhHHHHHHHHHHHHhhc---CC--eEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHH
Q 001162 621 VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDH---AP--SIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMD 695 (1134)
Q Consensus 621 ~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~---~P--sIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld 695 (1134)
..+.+.++|..+..+++++..+.+..+|+....- .. -.++|||+++|...|........+....++.+.++..+|
T Consensus 211 ~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlD 290 (423)
T KOG0744|consen 211 KGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLD 290 (423)
T ss_pred cceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHH
Confidence 4678899999999999998888888888765431 22 257789999998765322222223334478888999999
Q ss_pred HhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhc---ccCCC----------
Q 001162 696 EYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRR---SLECS---------- 762 (1134)
Q Consensus 696 ~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~---~l~~~---------- 762 (1134)
.+.... +|++++|+|-.+.+|.++.. |-+.++++.+|+.+.|.+|++..+.+. ++-..
T Consensus 291 rlK~~~-------NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~ 361 (423)
T KOG0744|consen 291 RLKRYP-------NVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEF 361 (423)
T ss_pred HhccCC-------CEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHH
Confidence 887543 69999999999999999999 999999999999999999999876531 21110
Q ss_pred ---HHH-HHHHhhh-cCCCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhh
Q 001162 763 ---DEI-LLDVASK-CDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMH 821 (1134)
Q Consensus 763 ---~~~-l~~la~~-teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~ 821 (1134)
.+. ...++.. +.|.+||-|+.|---|. ..+.+ ..+++.++|..|+.
T Consensus 362 i~~~~~~~~~~~~~~~~gLSGRtlrkLP~Lah-a~y~~------------~~~v~~~~fl~al~ 412 (423)
T KOG0744|consen 362 IKYQKALRNILIELSTVGLSGRTLRKLPLLAH-AEYFR------------TFTVDLSNFLLALL 412 (423)
T ss_pred hHhhHhHHHHHHHHhhcCCccchHhhhhHHHH-HhccC------------CCccChHHHHHHHH
Confidence 111 1122222 48889988877654433 22221 24677788877663
No 97
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.6e-16 Score=177.37 Aligned_cols=208 Identities=16% Similarity=0.244 Sum_probs=145.7
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s 630 (1134)
.+|..+.=-.+.+++|++.+..+.. ...++.+.|.+..+|.|||||||||||+++.|+|+.|+ ..+..++.+
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k--~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~------ydIydLeLt 269 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIK--GKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN------YDIYDLELT 269 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHh--cchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC------CceEEeeec
Confidence 4566666555678888888877765 56899999999999999999999999999999999998 667767666
Q ss_pred cccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCC----CCCCchhHHHHHHHHHHHHHHhccccccccC
Q 001162 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPE----GSQPSTSVIALTKFLVDIMDEYGEKRKSSCG 706 (1134)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~----~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~ 706 (1134)
...... + ++.++... ...+||+|+|||.-+..+.... +.+. ....-.+.-|++.+|++-+. |+
T Consensus 270 ~v~~n~--d----Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~-~~~~VTlSGLLNfiDGlwSs----cg 336 (457)
T KOG0743|consen 270 EVKLDS--D----LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEG-DLSRVTLSGLLNFLDGLWSS----CG 336 (457)
T ss_pred cccCcH--H----HHHHHHhC--CCCcEEEEeecccccccccccccccccccC-CcceeehHHhhhhhcccccc----CC
Confidence 554332 1 44454443 4458999999998763222111 1111 01112234455666665432 22
Q ss_pred CCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCC--CChhhHHH
Q 001162 707 IGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG--YDAYDLEI 783 (1134)
Q Consensus 707 ~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG--~s~~DL~~ 783 (1134)
+--++|+|||..+.|||||.||||++.+|++...+.++...++..++.... +...+..+....++ .+|+|+..
T Consensus 337 -~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~h~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 337 -DERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---DHRLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred -CceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---CcchhHHHHHHhhcCccCHHHHHH
Confidence 236899999999999999999999999999999999999999999876432 23334444444333 37777644
No 98
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.68 E-value=6.6e-16 Score=195.04 Aligned_cols=245 Identities=22% Similarity=0.271 Sum_probs=169.8
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc----------CCcEEEEe
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~----------~~~~i~i~ 910 (1134)
..++++.|.++..+.+.+.+... ...++||+||||||||++|+++|..+ +..++.++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~~-------------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCRR-------------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhcC-------------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 56788999988888776665432 23589999999999999999999987 77899999
Q ss_pred Ccccc--hhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecC
Q 001162 911 GPELL--NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATS 988 (1134)
Q Consensus 911 ~~el~--~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn 988 (1134)
++.+. .+|.|+.+..++.+|+.++...|+||||||+|.|.+.+..+.. ...+.+.|...|. .+.+.+||+|+
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~--~~~~~~~L~~~l~----~g~i~~IgaTt 319 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGG--SMDASNLLKPALS----SGKLRCIGSTT 319 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCc--cHHHHHHHHHHHh----CCCeEEEEecC
Confidence 98887 5799999999999999998778999999999999876432221 1223344444442 35688888888
Q ss_pred CCC-----ccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccC----CC-CCcccHHHHHHhccCCcHH-----HHHH
Q 001162 989 RPD-----LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL----PL-ADDVDLEAIAHMTEGFSGA-----DLQA 1053 (1134)
Q Consensus 989 ~p~-----~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~----~~-~~~vd~~~La~~t~g~sg~-----dl~~ 1053 (1134)
..+ .+|+++.| ||. .|.++.|+.+++..||+...... .+ -.+..+..++..+..|-+. ---.
T Consensus 320 ~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~ 396 (731)
T TIGR02639 320 YEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAID 396 (731)
T ss_pred HHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHH
Confidence 643 37999999 997 68999999999999999766542 11 1334456666666555432 1123
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhcC--C--CCcHHHHHHHHHHHHHhhc
Q 001162 1054 LLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKAR--P--SVSEAEKLRLYSIYGQFLD 1114 (1134)
Q Consensus 1054 l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~~--p--s~~~~~~~~~~~~~~~f~~ 1114 (1134)
++.+|+-.... .. .......|+.+|+..+++... | .++.++..++..+...+.+
T Consensus 397 lld~a~a~~~~---~~----~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~ 454 (731)
T TIGR02639 397 VIDEAGASFRL---RP----KAKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKA 454 (731)
T ss_pred HHHHhhhhhhc---Cc----ccccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhc
Confidence 44444322110 00 011235699999999987642 2 3345666666655554443
No 99
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=4.4e-16 Score=171.51 Aligned_cols=186 Identities=19% Similarity=0.284 Sum_probs=129.7
Q ss_pred CCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcC-CeEEEEcccch
Q 001162 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHA-PSIVIFDNLDS 666 (1134)
Q Consensus 588 ~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~-PsIL~IDEiD~ 666 (1134)
.+-++||||||||||||+.||.||+..+ ..+-.+...+..-.... .-..|.++|+.+.... .-+|||||+|.
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~SG------lDYA~mTGGDVAPlG~q-aVTkiH~lFDWakkS~rGLllFIDEADA 454 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARHSG------LDYAIMTGGDVAPLGAQ-AVTKIHKLFDWAKKSRRGLLLFIDEADA 454 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhhcC------CceehhcCCCccccchH-HHHHHHHHHHHHhhcccceEEEehhhHH
Confidence 3447799999999999999999999876 33333333443322222 2234788888887654 44889999999
Q ss_pred hccCCCCCCCCCCchhHHH-HHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHH
Q 001162 667 IISSSSDPEGSQPSTSVIA-LTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASE 745 (1134)
Q Consensus 667 L~~~~~~~~~~~~~~~~~~-l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~ee 745 (1134)
++-.++... -++.... +..+|.+.-|. . ..++++.+||.|.++|.++.. ||+..++||.|..++
T Consensus 455 FLceRnkty---mSEaqRsaLNAlLfRTGdq----S------rdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEE 519 (630)
T KOG0742|consen 455 FLCERNKTY---MSEAQRSALNALLFRTGDQ----S------RDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEE 519 (630)
T ss_pred HHHHhchhh---hcHHHHHHHHHHHHHhccc----c------cceEEEeccCCccchhHHHHh--hhhheeecCCCChHH
Confidence 985544332 2222222 33333222121 1 158999999999999999999 999999999999999
Q ss_pred HHHHHHHHhhhcc----------------------cC----CCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcc
Q 001162 746 RKAILEHEIQRRS----------------------LE----CSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGR 795 (1134)
Q Consensus 746 R~~IL~~~l~~~~----------------------l~----~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r 795 (1134)
|..||..++.++- +. ..+..+...|+.|+||+|++|..|+-.....++.+
T Consensus 520 Rfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQAavYgs 595 (630)
T KOG0742|consen 520 RFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAVYGS 595 (630)
T ss_pred HHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcc
Confidence 9999998876431 11 12334788999999999999999987655444433
No 100
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.62 E-value=2.1e-14 Score=165.35 Aligned_cols=219 Identities=16% Similarity=0.245 Sum_probs=151.2
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s 630 (1134)
..+.+++|.+..++.+...+..... ...++.++||+||||||||++|+++|++++ ..+..+++.
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~----------~~~~~~~~ll~GppG~GKT~la~~ia~~l~------~~~~~~~~~ 85 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK----------RGEALDHVLLYGPPGLGKTTLANIIANEMG------VNIRITSGP 85 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh----------cCCCCCcEEEECCCCccHHHHHHHHHHHhC------CCeEEEecc
Confidence 3567888898888877665543221 123456799999999999999999999987 334444443
Q ss_pred cccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc-----cc----
Q 001162 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE-----KR---- 701 (1134)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~-----~~---- 701 (1134)
.+.. .+. +..++... ..++||||||+|.+.. ...+.+...++.... ..
T Consensus 86 ~~~~--~~~----l~~~l~~l--~~~~vl~IDEi~~l~~---------------~~~e~l~~~~e~~~~~~~l~~~~~~~ 142 (328)
T PRK00080 86 ALEK--PGD----LAAILTNL--EEGDVLFIDEIHRLSP---------------VVEEILYPAMEDFRLDIMIGKGPAAR 142 (328)
T ss_pred cccC--hHH----HHHHHHhc--ccCCEEEEecHhhcch---------------HHHHHHHHHHHhcceeeeeccCcccc
Confidence 3221 122 33333332 4578999999999841 112234444443210 00
Q ss_pred ccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhH
Q 001162 702 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDL 781 (1134)
Q Consensus 702 ~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL 781 (1134)
.......++.+|++|+....+++.|++ ||...+.|++|+.+++.+|++..+...++.++++.+..++..+.| +++.+
T Consensus 143 ~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a 219 (328)
T PRK00080 143 SIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIA 219 (328)
T ss_pred ceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHH
Confidence 000112357899999999999999998 998889999999999999999999888899999999999999998 56888
Q ss_pred HHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhc
Q 001162 782 EILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1134)
Q Consensus 782 ~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1134)
..+++++.+.+..+ ....++.++...++..
T Consensus 220 ~~~l~~~~~~a~~~-----------~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 220 NRLLRRVRDFAQVK-----------GDGVITKEIADKALDM 249 (328)
T ss_pred HHHHHHHHHHHHHc-----------CCCCCCHHHHHHHHHH
Confidence 88888877665432 1134666776666643
No 101
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.61 E-value=1.5e-14 Score=157.75 Aligned_cols=207 Identities=25% Similarity=0.315 Sum_probs=137.9
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCc---EEEEeCcccchhcccccHHHHHHHHHHhhh-----cCCeEEEEcCcccccC
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLR---FISVKGPELLNKYIGASEQAVRDIFSKATA-----AAPCLLFFDEFDSIAP 951 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~---~i~i~~~el~~~~~G~se~~v~~lf~~A~~-----~~P~VLfiDEid~l~~ 951 (1134)
.++||||||||||+||+.||.....+ |+++++.. ..-+.+|++|+.|+. ....||||||||++..
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk 236 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK 236 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh
Confidence 69999999999999999999988655 88887753 455789999999854 3357999999999743
Q ss_pred CCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCc-cchhhcCcCcccceeecCCCCHHHHHHHHHHHHccC--
Q 001162 952 KRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL-LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL-- 1028 (1134)
Q Consensus 952 ~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~-ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~-- 1028 (1134)
. |.-+.|..++.++-++|-|||..|.+ ++.+|++++ +++.......++...||.+-...+
T Consensus 237 s--------------QQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC---~VfvLekL~~n~v~~iL~raia~l~d 299 (554)
T KOG2028|consen 237 S--------------QQDTFLPHVENGDITLIGATTENPSFQLNAALLSRC---RVFVLEKLPVNAVVTILMRAIASLGD 299 (554)
T ss_pred h--------------hhhcccceeccCceEEEecccCCCccchhHHHHhcc---ceeEeccCCHHHHHHHHHHHHHhhcc
Confidence 2 22234556677777777778888887 999999944 355666778888888887633211
Q ss_pred ------CCCC---ccc---HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhcCCC
Q 001162 1029 ------PLAD---DVD---LEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARPS 1096 (1134)
Q Consensus 1029 ------~~~~---~vd---~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~~ps 1096 (1134)
+++. .++ ++.|+..++|-+.+.+.++--.+.+ +..+ ........++.+|+++.++.-.-.
T Consensus 300 ser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m-~~tr-------~g~~~~~~lSidDvke~lq~s~~~ 371 (554)
T KOG2028|consen 300 SERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSM-FCTR-------SGQSSRVLLSIDDVKEGLQRSHIL 371 (554)
T ss_pred ccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHH-HHhh-------cCCcccceecHHHHHHHHhhccce
Confidence 2221 122 5677777777665555443222111 1111 122355789999999999765544
Q ss_pred CcHHHHHHHHHHHHHhhc-ccchh
Q 001162 1097 VSEAEKLRLYSIYGQFLD-SKKSV 1119 (1134)
Q Consensus 1097 ~~~~~~~~~~~~~~~f~~-~r~~~ 1119 (1134)
....-.+.|..| +.|.+ .|++.
T Consensus 372 YDr~Ge~HYntI-SA~HKSmRG~D 394 (554)
T KOG2028|consen 372 YDRAGEEHYNTI-SALHKSMRGSD 394 (554)
T ss_pred ecccchhHHHHH-HHHHHhhcCCc
Confidence 444444455554 45555 56554
No 102
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=2e-14 Score=173.70 Aligned_cols=187 Identities=19% Similarity=0.235 Sum_probs=139.3
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC-------------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------- 904 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~------------- 904 (1134)
+.+..|++|+|++.+++.|...+... +.+..+||+||+|||||++|+++|+.++.
T Consensus 10 YRPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 10 WRPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 45678999999999999999887632 23345799999999999999999998854
Q ss_pred -----------cEEEEeCcccchhcccccHHHHHHHHHHhh----hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHh
Q 001162 905 -----------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 969 (1134)
Q Consensus 905 -----------~~i~i~~~el~~~~~G~se~~v~~lf~~A~----~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL 969 (1134)
.+++++..+ ...-+.++++++.+. .+...|+||||+|.| +....|.||
T Consensus 78 sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L-----------T~~A~NALL 140 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHML-----------TNHAFNAML 140 (830)
T ss_pred HHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhC-----------CHHHHHHHH
Confidence 244444332 122355777777653 234579999999998 446789999
Q ss_pred hhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcH
Q 001162 970 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSG 1048 (1134)
Q Consensus 970 ~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg 1048 (1134)
+.|+ +...++.||.+|+.++.|.+.+++ |+ ..+.|..++.++..++|+.++++.++. ++..+..|++.++|- .
T Consensus 141 KtLE--EPP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gs-m 214 (830)
T PRK07003 141 KTLE--EPPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGS-M 214 (830)
T ss_pred HHHH--hcCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-H
Confidence 9997 445678888899999999999998 66 577899999999999999988776654 344467777887753 4
Q ss_pred HHHHHHHHHHH
Q 001162 1049 ADLQALLSDAQ 1059 (1134)
Q Consensus 1049 ~dl~~l~~~A~ 1059 (1134)
+|..+++..+.
T Consensus 215 RdALsLLdQAi 225 (830)
T PRK07003 215 RDALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHHH
Confidence 55555544433
No 103
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.60 E-value=3.2e-14 Score=162.37 Aligned_cols=218 Identities=18% Similarity=0.249 Sum_probs=147.7
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~ 631 (1134)
+|.+++|.+..++.+...+...... ...+.+++|+||||||||++++++|++++ ..+..+.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~----------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~------~~~~~~~~~~ 65 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR----------QEALDHLLLYGPPGLGKTTLAHIIANEMG------VNLKITSGPA 65 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc----------CCCCCeEEEECCCCCCHHHHHHHHHHHhC------CCEEEeccch
Confidence 4667888998888877766432211 13346799999999999999999999986 3333333332
Q ss_pred ccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc---------cc
Q 001162 632 LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK---------RK 702 (1134)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~---------~~ 702 (1134)
... .+. +...+... ..+.+|||||+|.+.+ ...+.|...++..... ..
T Consensus 66 ~~~--~~~----l~~~l~~~--~~~~vl~iDEi~~l~~---------------~~~e~l~~~~~~~~~~~v~~~~~~~~~ 122 (305)
T TIGR00635 66 LEK--PGD----LAAILTNL--EEGDVLFIDEIHRLSP---------------AVEELLYPAMEDFRLDIVIGKGPSARS 122 (305)
T ss_pred hcC--chh----HHHHHHhc--ccCCEEEEehHhhhCH---------------HHHHHhhHHHhhhheeeeeccCccccc
Confidence 211 112 22222222 4567999999999842 1122344444432210 00
Q ss_pred cccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHH
Q 001162 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE 782 (1134)
Q Consensus 703 ~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~ 782 (1134)
......++.+|++|+.+..+++++++ ||...+.|++|+.+++.+|++..+...++.++++.+..++..+.|+ ++.+.
T Consensus 123 ~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~-pR~~~ 199 (305)
T TIGR00635 123 VRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT-PRIAN 199 (305)
T ss_pred eeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC-cchHH
Confidence 00112358899999999999999999 9988889999999999999999988888889999999999999984 57777
Q ss_pred HHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhc
Q 001162 783 ILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1134)
Q Consensus 783 ~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1134)
.+++.+...+... ....++.++...++..
T Consensus 200 ~ll~~~~~~a~~~-----------~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 200 RLLRRVRDFAQVR-----------GQKIINRDIALKALEM 228 (305)
T ss_pred HHHHHHHHHHHHc-----------CCCCcCHHHHHHHHHH
Confidence 8888765544322 1134677777766654
No 104
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.3e-14 Score=169.93 Aligned_cols=184 Identities=17% Similarity=0.219 Sum_probs=134.6
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCc------------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------------ 905 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~------------ 905 (1134)
+.+..|++++|++.+.+.|...+... +.+..+||+||+|||||++|+++|+.++..
T Consensus 12 yRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~ 79 (484)
T PRK14956 12 YRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT 79 (484)
T ss_pred hCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc
Confidence 34678999999999999998887632 223358999999999999999999988652
Q ss_pred ------------EEEEeCcccchhcccccHHHHHHHHHHhh----hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHh
Q 001162 906 ------------FISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 969 (1134)
Q Consensus 906 ------------~i~i~~~el~~~~~G~se~~v~~lf~~A~----~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL 969 (1134)
++++++.. ...-..+|++.+.+. .+...|+||||+|.| .....+.||
T Consensus 80 sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L-----------s~~A~NALL 142 (484)
T PRK14956 80 SCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML-----------TDQSFNALL 142 (484)
T ss_pred HHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-----------CHHHHHHHH
Confidence 34444321 112345666665543 345679999999998 456889999
Q ss_pred hhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcH
Q 001162 970 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSG 1048 (1134)
Q Consensus 970 ~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg 1048 (1134)
+.|+ +....+++|.+|+.++.|.+++++ |+. .+.|..++.++....++.++...++. ++..+..|++.++| +.
T Consensus 143 KtLE--EPp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~ 216 (484)
T PRK14956 143 KTLE--EPPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SV 216 (484)
T ss_pred HHhh--cCCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hH
Confidence 9997 455678888888889999999999 664 67888999999999999888776653 34446667777665 34
Q ss_pred HHHHHHHH
Q 001162 1049 ADLQALLS 1056 (1134)
Q Consensus 1049 ~dl~~l~~ 1056 (1134)
+|.-+++.
T Consensus 217 RdAL~lLe 224 (484)
T PRK14956 217 RDMLSFME 224 (484)
T ss_pred HHHHHHHH
Confidence 44444443
No 105
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=8e-15 Score=175.16 Aligned_cols=186 Identities=22% Similarity=0.268 Sum_probs=139.3
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC-------------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------- 904 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~------------- 904 (1134)
+.+..|++|+|++.+++.|...+... +.+..+||+||+|||||++|+.+|+.++.
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 44678999999999999999988742 23345799999999999999999998865
Q ss_pred ----------------cEEEEeCcccchhcccccHHHHHHHHHHhh----hcCCeEEEEcCcccccCCCCCCCCcchhhH
Q 001162 905 ----------------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRV 964 (1134)
Q Consensus 905 ----------------~~i~i~~~el~~~~~G~se~~v~~lf~~A~----~~~P~VLfiDEid~l~~~r~~~~~~~~~rv 964 (1134)
.+++++... ...-+.+|++.+.+. .+...|+||||+|.| ....
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L-----------s~~A 140 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML-----------TNHA 140 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc-----------CHHH
Confidence 234443331 122355677776653 345679999999998 4467
Q ss_pred HHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCC-cccHHHHHHhc
Q 001162 965 VNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLAD-DVDLEAIAHMT 1043 (1134)
Q Consensus 965 ~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~-~vd~~~La~~t 1043 (1134)
.|.||+.|+ +...+++||.+|+.++.|.+.+++ |+ ..+.|..++.++..+.++.++.+.++.. +..+..|++.+
T Consensus 141 aNALLKTLE--EPP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A 215 (700)
T PRK12323 141 FNAMLKTLE--EPPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAA 215 (700)
T ss_pred HHHHHHhhc--cCCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 899999998 455678888889999999999999 66 5778999999999999998887665542 23356677777
Q ss_pred cCCcHHHHHHHHHHH
Q 001162 1044 EGFSGADLQALLSDA 1058 (1134)
Q Consensus 1044 ~g~sg~dl~~l~~~A 1058 (1134)
+| +.++..+++..+
T Consensus 216 ~G-s~RdALsLLdQa 229 (700)
T PRK12323 216 QG-SMRDALSLTDQA 229 (700)
T ss_pred CC-CHHHHHHHHHHH
Confidence 75 556655555543
No 106
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.5e-14 Score=170.39 Aligned_cols=206 Identities=16% Similarity=0.189 Sum_probs=141.3
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC-------------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------- 904 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~------------- 904 (1134)
+.+..|++++|++.+++.|...+... +.+.++||+||||||||++|+++|+.++.
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 34578999999999999998876642 23446899999999999999999998764
Q ss_pred -----------cEEEEeCcccchhcccccHHHHHHHHHHhhh----cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHh
Q 001162 905 -----------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 969 (1134)
Q Consensus 905 -----------~~i~i~~~el~~~~~G~se~~v~~lf~~A~~----~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL 969 (1134)
.++.++++.- ..-..+|.+.+.+.. +...|+||||+|.+. ....+.|+
T Consensus 76 ~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt-----------~~a~~~LL 138 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT-----------KEAFNALL 138 (472)
T ss_pred HHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-----------HHHHHHHH
Confidence 4555555321 123456666665532 234699999999983 34667888
Q ss_pred hhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcH
Q 001162 970 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSG 1048 (1134)
Q Consensus 970 ~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg 1048 (1134)
..|+. ..+.+++|++|+.|+.+++++.+ |+. .+.|.+++.++...+++..++..++. ++..++.|+..+.|
T Consensus 139 k~LE~--p~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G--- 210 (472)
T PRK14962 139 KTLEE--PPSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG--- 210 (472)
T ss_pred HHHHh--CCCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC---
Confidence 88873 33457777777778899999999 664 78999999999999999988765543 23335666665543
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhc
Q 001162 1049 ADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 1093 (1134)
Q Consensus 1049 ~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~ 1093 (1134)
|++.+++. +....... . ..||.+++..++...
T Consensus 211 -dlR~aln~-----Le~l~~~~-----~--~~It~e~V~~~l~~~ 242 (472)
T PRK14962 211 -GLRDALTM-----LEQVWKFS-----E--GKITLETVHEALGLI 242 (472)
T ss_pred -CHHHHHHH-----HHHHHHhc-----C--CCCCHHHHHHHHcCC
Confidence 44433221 11111100 0 138888888887543
No 107
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.58 E-value=4.8e-14 Score=150.60 Aligned_cols=202 Identities=19% Similarity=0.295 Sum_probs=146.3
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~ 631 (1134)
.|.+.+|.+..++.+.=++.... .......|+|||||||.||||||..+|++++ ..+...+.-.
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk----------~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg------vn~k~tsGp~ 87 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAK----------KRGEALDHVLLFGPPGLGKTTLAHIIANELG------VNLKITSGPA 87 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHH----------hcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc------CCeEeccccc
Confidence 35566777776666555554322 2234557899999999999999999999998 3333322222
Q ss_pred ccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc-----ccccc---
Q 001162 632 LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-----EKRKS--- 703 (1134)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~-----~~~~~--- 703 (1134)
+ ...+++ ..++... ...+||||||||.+.+ .+-+.|...|+.+. .+...
T Consensus 88 l--eK~gDl----aaiLt~L--e~~DVLFIDEIHrl~~---------------~vEE~LYpaMEDf~lDI~IG~gp~Ars 144 (332)
T COG2255 88 L--EKPGDL----AAILTNL--EEGDVLFIDEIHRLSP---------------AVEEVLYPAMEDFRLDIIIGKGPAARS 144 (332)
T ss_pred c--cChhhH----HHHHhcC--CcCCeEEEehhhhcCh---------------hHHHHhhhhhhheeEEEEEccCCccce
Confidence 2 222333 3333333 3457999999999953 44556777777653 11111
Q ss_pred -ccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHH
Q 001162 704 -SCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE 782 (1134)
Q Consensus 704 -~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~ 782 (1134)
.-...++.+|++|++...+...|+. ||....++..|+.++..+|+.......++.++++....+|....| +|+=..
T Consensus 145 v~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAn 221 (332)
T COG2255 145 IRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIAN 221 (332)
T ss_pred EeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHH
Confidence 1224589999999999999999999 999999999999999999999988888889999999999999988 787777
Q ss_pred HHHHHHHHHHhcc
Q 001162 783 ILVDRTVHAAVGR 795 (1134)
Q Consensus 783 ~Lv~~a~~~a~~r 795 (1134)
.|++|....|..+
T Consensus 222 RLLrRVRDfa~V~ 234 (332)
T COG2255 222 RLLRRVRDFAQVK 234 (332)
T ss_pred HHHHHHHHHHHHh
Confidence 7888877666543
No 108
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.58 E-value=2.3e-14 Score=178.74 Aligned_cols=223 Identities=21% Similarity=0.236 Sum_probs=154.1
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc----------CCcEEEEe
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~----------~~~~i~i~ 910 (1134)
-.++.+.|-++..+.+.+.+... ...++||+||||||||++|+++|... +..++.++
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r~-------------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCRR-------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhcc-------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 35667888887777777655431 23578999999999999999999864 55677777
Q ss_pred Ccccc--hhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecC
Q 001162 911 GPELL--NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATS 988 (1134)
Q Consensus 911 ~~el~--~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn 988 (1134)
...++ .+|.|+.+..++.+|+.++...++||||||+|.|++.++.... ...+.+.|...+ ....+.+|++|+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g--~~d~~nlLkp~L----~~g~i~vIgATt 323 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG--QVDAANLIKPLL----SSGKIRVIGSTT 323 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc--HHHHHHHHHHHH----hCCCeEEEecCC
Confidence 66666 4688999999999999998888899999999999876532211 122323232222 346789999999
Q ss_pred CCC-----ccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCccc-----HHHHHHhc-----cCCcHHHHHH
Q 001162 989 RPD-----LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVD-----LEAIAHMT-----EGFSGADLQA 1053 (1134)
Q Consensus 989 ~p~-----~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd-----~~~La~~t-----~g~sg~dl~~ 1053 (1134)
.++ ..|++|.| ||+ .|.++.|+.+++..||+.+..++....++. +...+..+ +.+-+.....
T Consensus 324 ~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaid 400 (758)
T PRK11034 324 YQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 400 (758)
T ss_pred hHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHH
Confidence 875 37999999 996 799999999999999998776554433333 22222222 2333456667
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhh
Q 001162 1054 LLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASK 1092 (1134)
Q Consensus 1054 l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~ 1092 (1134)
++.+|+..... ... . .....++.+|+.+.+..
T Consensus 401 lldea~a~~~~--~~~-~----~~~~~v~~~~i~~v~~~ 432 (758)
T PRK11034 401 VIDEAGARARL--MPV-S----KRKKTVNVADIESVVAR 432 (758)
T ss_pred HHHHHHHhhcc--Ccc-c----ccccccChhhHHHHHHH
Confidence 78877754311 100 0 11235888888888764
No 109
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.1e-13 Score=168.29 Aligned_cols=360 Identities=18% Similarity=0.254 Sum_probs=206.0
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCC----ceeeEEEEEeccccc--ccchhhHHHHHHHHHHHHhh-cCCeEEEEcc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVFVCCSRLS--LEKGPIIRQALSNFISEALD-HAPSIVIFDN 663 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~----~~~~~~~~v~~s~l~--~~~~~~~~~~l~~~f~~a~~-~~PsIL~IDE 663 (1134)
++-+|.|.||+|||.++.-+|+....+. .....++.++...+. ..+.++++.+++.+..++.. ...-||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 5678999999999999999999876432 123556667766544 45568888999999998874 4566899999
Q ss_pred cchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCC-----CCChhhccCCCccccccC
Q 001162 664 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQL 738 (1134)
Q Consensus 664 iD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~-----~Ld~aL~~~gRF~~~i~l 738 (1134)
++-+.+.... .+ .....+.|...+.. +.+-+||+|+..+ .-+|+|-+ ||+ .+.+
T Consensus 289 lh~lvg~g~~-~~------~~d~~nlLkp~L~r-----------g~l~~IGatT~e~Y~k~iekdPalEr--rw~-l~~v 347 (898)
T KOG1051|consen 289 LHWLVGSGSN-YG------AIDAANLLKPLLAR-----------GGLWCIGATTLETYRKCIEKDPALER--RWQ-LVLV 347 (898)
T ss_pred eeeeecCCCc-ch------HHHHHHhhHHHHhc-----------CCeEEEecccHHHHHHHHhhCcchhh--Ccc-eeEe
Confidence 9999853322 11 12333333332221 2378898887433 24789988 898 7778
Q ss_pred CCCCHHHHHHHHHHHhhh----cccCCCHHHHHHHhhh-----cCCCChhhHHHHHHHHHHHHhccc------ccCCC--
Q 001162 739 PAPAASERKAILEHEIQR----RSLECSDEILLDVASK-----CDGYDAYDLEILVDRTVHAAVGRY------LHSDS-- 801 (1134)
Q Consensus 739 ~~P~~eeR~~IL~~~l~~----~~l~~~~~~l~~la~~-----teG~s~~DL~~Lv~~a~~~a~~r~------~~~~~-- 801 (1134)
+.|+.+....||...-.. ++..+++..+...+.. +..+.+.-...++++|+....... ++...
T Consensus 348 ~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~~~~~~lP~wL~~~~~~ 427 (898)
T KOG1051|consen 348 PIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVKSQAESLPPWLQNLERV 427 (898)
T ss_pred ccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHHHHhhhhhhCCHHHHhhhhh
Confidence 899988777777755443 2233333322111111 222223223333333332221100 00000
Q ss_pred -------------ccc-----------------cc---------c----------ccccchhh-hHhhhhc--c------
Q 001162 802 -------------SFE-----------------KH---------I----------KPTLVRDD-FSQAMHE--F------ 823 (1134)
Q Consensus 802 -------------~~~-----------------~~---------~----------~~~lt~eD-f~~Al~~--~------ 823 (1134)
..+ .. . ...+.... +.++... +
T Consensus 428 ~~~~~~e~~~L~kk~d~~~h~r~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~~~~~~~~~~~~~~k~~r~~d~~~~~~l 507 (898)
T KOG1051|consen 428 DIKLQDEISELQKKWNQALHKRPSLESLAPSKPTQQPLSASVDSERSVIEELKLKKNSLDRNSLLAKAHRPNDYTRETDL 507 (898)
T ss_pred hhhhHHHHHHHHHhhhhhhccccccccccccccccccchhhhccchhHHhhhccccCCcccchhhhcccCCCCcchhhhc
Confidence 000 00 0 00000000 0000000 0
Q ss_pred ------------------ccceeccccccccCCCCCC----------------CCCCCChhHHHHHHHHHHhcCCCchhH
Q 001162 824 ------------------LPVAMRDITKTSAEGGRSG----------------WDDVGGLTDIQNAIKEMIELPSKFPNI 869 (1134)
Q Consensus 824 ------------------~P~~lr~v~~~~~~~~~~~----------------~~~i~gl~~~k~~l~~~i~~~~~~~~~ 869 (1134)
.|.....+.......+... -..|+|++++...+.+++...... +
T Consensus 508 ~~~~~p~~~~~~~~~~~~~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~g--l 585 (898)
T KOG1051|consen 508 RYGRIPDELSEKSNDNQGGESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAG--L 585 (898)
T ss_pred cccccchhhhhhcccccCCccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcc--c
Confidence 0000000000000000000 123678888888888777654211 0
Q ss_pred HhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccc---------hhcccccHHHHHHHHHHhhhcC
Q 001162 870 FAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL---------NKYIGASEQAVRDIFSKATAAA 937 (1134)
Q Consensus 870 ~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~---------~~~~G~se~~v~~lf~~A~~~~ 937 (1134)
. .+ .+...+||.||.|+|||-+|+++|..+ .-.||.++++++. .+|.|..+- ..+.+..+...
T Consensus 586 -~-~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~g--g~LteavrrrP 660 (898)
T KOG1051|consen 586 -K-DP-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEG--GQLTEAVKRRP 660 (898)
T ss_pred -C-CC-CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhH--HHHHHHHhcCC
Confidence 0 01 356779999999999999999999987 3589999999632 246676554 36677778888
Q ss_pred CeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc---------ccccEEEEEecCC
Q 001162 938 PCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---------VLTGVFVFAATSR 989 (1134)
Q Consensus 938 P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~---------~~~~v~vIatTn~ 989 (1134)
.+||+|||||.. +..+++.|++.||.-+ ...+++||.|+|.
T Consensus 661 ~sVVLfdeIEkA-----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 661 YSVVLFEEIEKA-----------HPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred ceEEEEechhhc-----------CHHHHHHHHHHHhcCccccCCCcEeeccceEEEEeccc
Confidence 899999999987 4568888888887533 2346889988774
No 110
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=7.7e-14 Score=167.25 Aligned_cols=184 Identities=21% Similarity=0.246 Sum_probs=135.9
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC-------------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------- 904 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~------------- 904 (1134)
+.+..|++++|++.+++.|...+... +.+..+||+||+|||||++|+++|+.++.
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 34578999999999999999887632 33457899999999999999999998864
Q ss_pred -----------cEEEEeCcccchhcccccHHHHHHHHHHhh----hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHh
Q 001162 905 -----------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 969 (1134)
Q Consensus 905 -----------~~i~i~~~el~~~~~G~se~~v~~lf~~A~----~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL 969 (1134)
.++.+++++- ..-+.+|++...+. .++..|+||||+|.| .....+.|+
T Consensus 77 sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L-----------S~~A~NALL 139 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML-----------STHSFNALL 139 (702)
T ss_pred HHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc-----------CHHHHHHHH
Confidence 3455555421 12456777776553 244679999999998 345778899
Q ss_pred hhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcH
Q 001162 970 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSG 1048 (1134)
Q Consensus 970 ~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg 1048 (1134)
+.|+. ....+.||.+|+.+..+.+.+++ |+ ..+.|.+++.++....++.++++.++. ++..+..|++.+.| +.
T Consensus 140 KtLEE--PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dL 213 (702)
T PRK14960 140 KTLEE--PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SL 213 (702)
T ss_pred HHHhc--CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 99873 34566677777888888888887 66 577999999999999999988876654 33446667777664 55
Q ss_pred HHHHHHHH
Q 001162 1049 ADLQALLS 1056 (1134)
Q Consensus 1049 ~dl~~l~~ 1056 (1134)
+++.+++.
T Consensus 214 RdALnLLD 221 (702)
T PRK14960 214 RDALSLTD 221 (702)
T ss_pred HHHHHHHH
Confidence 55555544
No 111
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.58 E-value=2e-14 Score=174.59 Aligned_cols=212 Identities=21% Similarity=0.263 Sum_probs=147.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc----------CCcEEE
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFIS 908 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~----------~~~~i~ 908 (1134)
.+..|+++.|.+...+.++..+.. ..+.++||+||||||||++|+++++.+ +.+|+.
T Consensus 60 rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 60 RPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred CcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 356889999999998888765421 123589999999999999999998753 368999
Q ss_pred EeCccc-------chhcccccH----------------HHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHH
Q 001162 909 VKGPEL-------LNKYIGASE----------------QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVV 965 (1134)
Q Consensus 909 i~~~el-------~~~~~G~se----------------~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~ 965 (1134)
++|... .+..+|... +.-...+..|. ..+|||||+|.|. ....
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~---gG~L~IdEI~~L~-----------~~~q 192 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAH---GGVLFIDEIGELH-----------PVQM 192 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccC---CcEEEEechhhCC-----------HHHH
Confidence 998632 111111100 00011233333 3599999999983 3456
Q ss_pred HhHhhhcccc---------------------------cccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHH
Q 001162 966 NQFLTELDGV---------------------------EVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERL 1018 (1134)
Q Consensus 966 ~~lL~~ld~~---------------------------~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~ 1018 (1134)
+.|+..|+.- .+.+-.+|++||+.|+.++|++++ |+. .++|++++.+++.
T Consensus 193 ~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~ 269 (531)
T TIGR02902 193 NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIK 269 (531)
T ss_pred HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHH
Confidence 6666655321 011235666777889999999999 875 6789999999999
Q ss_pred HHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhc
Q 001162 1019 DILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 1093 (1134)
Q Consensus 1019 ~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~ 1093 (1134)
+|++..+++.++. ++..++.++.++. +++++.++++.|+..|..+ ++..|+.+|+.+++...
T Consensus 270 ~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~-----------~~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 270 EIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGE-----------GRKRILAEDIEWVAENG 332 (531)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhC-----------CCcEEcHHHHHHHhCCc
Confidence 9999999877653 3333566666553 7899999999888766432 23579999999998643
No 112
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.57 E-value=3.8e-14 Score=180.07 Aligned_cols=213 Identities=21% Similarity=0.315 Sum_probs=143.2
Q ss_pred ccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccc-
Q 001162 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS- 633 (1134)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~- 633 (1134)
+++|++.+++.|.+.+...... +...+.++||+||||||||++|+++|+.++ .+++.+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~---------~~~~~~~lll~GppG~GKT~lAk~iA~~l~------~~~~~i~~~~~~~ 385 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR---------GKMKGPILCLVGPPGVGKTSLGKSIAKALN------RKFVRFSLGGVRD 385 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh---------cCCCCceEEEECCCCCCHHHHHHHHHHHhc------CCeEEEeCCCccc
Confidence 4678899999988876432210 112223699999999999999999999987 556666654432
Q ss_pred --------ccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHH-----hccc
Q 001162 634 --------LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE-----YGEK 700 (1134)
Q Consensus 634 --------~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~-----~~~~ 700 (1134)
..+.+...+.+.+.|..+....| |+||||+|.+.+. ..+ +. ...|++.+|. +...
T Consensus 386 ~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~---~~~----~~----~~aLl~~ld~~~~~~f~d~ 453 (775)
T TIGR00763 386 EAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSS---FRG----DP----ASALLEVLDPEQNNAFSDH 453 (775)
T ss_pred HHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCc---cCC----CH----HHHHHHhcCHHhcCccccc
Confidence 12233334455566777655555 8999999999731 111 11 2233444432 1100
Q ss_pred c-ccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhh-----hc-----ccCCCHHHHHHH
Q 001162 701 R-KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ-----RR-----SLECSDEILLDV 769 (1134)
Q Consensus 701 ~-~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~-----~~-----~l~~~~~~l~~l 769 (1134)
. .......++++|+|+|..+.++++|++ ||. .++|+.|+.+++.+|++.++. .. .+.++++.+..+
T Consensus 454 ~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i 530 (775)
T TIGR00763 454 YLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLL 530 (775)
T ss_pred cCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHH
Confidence 0 001112368999999999999999999 996 889999999999999987652 22 345788888887
Q ss_pred hh-hcCCCChhhHHHHHHHHHHHHhcccc
Q 001162 770 AS-KCDGYDAYDLEILVDRTVHAAVGRYL 797 (1134)
Q Consensus 770 a~-~teG~s~~DL~~Lv~~a~~~a~~r~~ 797 (1134)
+. .|..+..++|+..+.+.+..+..+..
T Consensus 531 ~~~~~~e~g~R~l~r~i~~~~~~~~~~~~ 559 (775)
T TIGR00763 531 IKYYTREAGVRNLERQIEKICRKAAVKLV 559 (775)
T ss_pred HHhcChhcCChHHHHHHHHHHHHHHHHHH
Confidence 76 45566778999888888877765543
No 113
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=9.9e-14 Score=161.71 Aligned_cols=204 Identities=22% Similarity=0.225 Sum_probs=142.0
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC-------------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------- 904 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~------------- 904 (1134)
+.+..|++++|++.+++.+...+... +.+..+||+||||||||++|+++|+.+..
T Consensus 10 yrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~ 77 (363)
T PRK14961 10 WRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI 77 (363)
T ss_pred hCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 34578999999999999998887632 22345799999999999999999998753
Q ss_pred -----------cEEEEeCcccchhcccccHHHHHHHHHHhhh----cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHh
Q 001162 905 -----------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 969 (1134)
Q Consensus 905 -----------~~i~i~~~el~~~~~G~se~~v~~lf~~A~~----~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL 969 (1134)
.++.++++. ...-..++++.+.+.. +...|+||||+|.+ .....+.|+
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l-----------~~~a~naLL 140 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML-----------SRHSFNALL 140 (363)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc-----------CHHHHHHHH
Confidence 223333221 1223557777766532 23469999999988 345678888
Q ss_pred hhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcH
Q 001162 970 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSG 1048 (1134)
Q Consensus 970 ~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg 1048 (1134)
+.|+. ....+.+|.+|+.++.+.+++.+ |+ ..+.|++|+.++..++++.++++.+.. ++..+..++..+.| +.
T Consensus 141 k~lEe--~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~ 214 (363)
T PRK14961 141 KTLEE--PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SM 214 (363)
T ss_pred HHHhc--CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 88873 34566666677888889899988 66 578999999999999999988876643 33446667777764 45
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHh
Q 001162 1049 ADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIAS 1091 (1134)
Q Consensus 1049 ~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~ 1091 (1134)
+++.+++..+... +...||.+++.+++.
T Consensus 215 R~al~~l~~~~~~---------------~~~~It~~~v~~~l~ 242 (363)
T PRK14961 215 RDALNLLEHAINL---------------GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHHHHHh---------------cCCCCCHHHHHHHHC
Confidence 5555555433211 113477777777664
No 114
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=1e-13 Score=165.69 Aligned_cols=187 Identities=24% Similarity=0.271 Sum_probs=139.8
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCc------------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------------ 905 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~------------ 905 (1134)
+.+..|++++|++.+.+.|...+... +.+.++||+||||||||++|+++|+.++..
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C 82 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence 45678999999999999998876532 334579999999999999999999988542
Q ss_pred ----------------EEEEeCcccchhcccccHHHHHHHHHHhhh----cCCeEEEEcCcccccCCCCCCCCcchhhHH
Q 001162 906 ----------------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVV 965 (1134)
Q Consensus 906 ----------------~i~i~~~el~~~~~G~se~~v~~lf~~A~~----~~P~VLfiDEid~l~~~r~~~~~~~~~rv~ 965 (1134)
++++++.. ......++++++.+.. +...|+||||+|.+ ....+
T Consensus 83 ~~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L-----------s~~a~ 145 (507)
T PRK06645 83 EQCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHML-----------SKGAF 145 (507)
T ss_pred CCChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhc-----------CHHHH
Confidence 22222211 1235678888887743 23469999999988 34568
Q ss_pred HhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhcc
Q 001162 966 NQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTE 1044 (1134)
Q Consensus 966 ~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~ 1044 (1134)
+.|++.|+ +....+++|.+|+.++.+.+++++ |+ ..+.|.+++.++...+++.++++.++. ++..++.++..++
T Consensus 146 naLLk~LE--epp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~ 220 (507)
T PRK06645 146 NALLKTLE--EPPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSE 220 (507)
T ss_pred HHHHHHHh--hcCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 88998887 345567777778888899999998 66 467899999999999999999877654 3344677888777
Q ss_pred CCcHHHHHHHHHHHH
Q 001162 1045 GFSGADLQALLSDAQ 1059 (1134)
Q Consensus 1045 g~sg~dl~~l~~~A~ 1059 (1134)
| +.+++.+++..+.
T Consensus 221 G-slR~al~~Ldkai 234 (507)
T PRK06645 221 G-SARDAVSILDQAA 234 (507)
T ss_pred C-CHHHHHHHHHHHH
Confidence 5 6677666666543
No 115
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=4.2e-14 Score=167.36 Aligned_cols=212 Identities=22% Similarity=0.308 Sum_probs=145.5
Q ss_pred ccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccc--
Q 001162 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL-- 632 (1134)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l-- 632 (1134)
+-+|+++.++.|++++.+..... +... .-++|+||||+|||+|++.||+.++ ..++.++...+
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~--------~~kG-pILcLVGPPGVGKTSLgkSIA~al~------RkfvR~sLGGvrD 388 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTK--------KLKG-PILCLVGPPGVGKTSLGKSIAKALG------RKFVRISLGGVRD 388 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhc--------cCCC-cEEEEECCCCCCchhHHHHHHHHhC------CCEEEEecCcccc
Confidence 45789999999999996633211 1222 2389999999999999999999998 67777776544
Q ss_pred ----c---ccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHH-----HHHHhccc
Q 001162 633 ----S---LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD-----IMDEYGEK 700 (1134)
Q Consensus 633 ----~---~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~-----~ld~~~~~ 700 (1134)
. -.|.|.+...+-+....|....| +++|||||++.+ +..|. ....+++.|.- +.|+|..-
T Consensus 389 EAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~s---s~rGD----PaSALLEVLDPEQN~~F~DhYLev 460 (782)
T COG0466 389 EAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGS---SFRGD----PASALLEVLDPEQNNTFSDHYLEV 460 (782)
T ss_pred HHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccC---CCCCC----hHHHHHhhcCHhhcCchhhccccC
Confidence 2 34667777778788888877777 899999999963 22222 11255555532 33444322
Q ss_pred cccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhh-----hcc-----cCCCHHHHHHHh
Q 001162 701 RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ-----RRS-----LECSDEILLDVA 770 (1134)
Q Consensus 701 ~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~-----~~~-----l~~~~~~l~~la 770 (1134)
. .....|+||+|+|+.+.||..|+. |+. +|++.-|+.+|..+|.+.++- .++ +.++++++..+.
T Consensus 461 ~---yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI 534 (782)
T COG0466 461 P---YDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDII 534 (782)
T ss_pred c---cchhheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHH
Confidence 1 122369999999999999999999 987 999999999999999997753 223 447788777766
Q ss_pred hhc-CCCChhhHHHHHHHHHHHHhcc
Q 001162 771 SKC-DGYDAYDLEILVDRTVHAAVGR 795 (1134)
Q Consensus 771 ~~t-eG~s~~DL~~Lv~~a~~~a~~r 795 (1134)
... ..---|.|+.-+...++.++..
T Consensus 535 ~~YTREAGVR~LeR~i~ki~RK~~~~ 560 (782)
T COG0466 535 RYYTREAGVRNLEREIAKICRKAAKK 560 (782)
T ss_pred HHHhHhhhhhHHHHHHHHHHHHHHHH
Confidence 543 2111244554444444444433
No 116
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.56 E-value=7.1e-14 Score=165.80 Aligned_cols=200 Identities=26% Similarity=0.363 Sum_probs=134.6
Q ss_pred CCCCCCCCCChhHHHHH---HHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccc
Q 001162 839 GRSGWDDVGGLTDIQNA---IKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 915 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~---l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~ 915 (1134)
.+..+++++|++.+... +...+... ...+++|+||||||||++|+++|+.++.+|+.+++...
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~~~-------------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~- 72 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIEAG-------------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS- 72 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHHcC-------------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-
Confidence 34678899999988555 77766421 22379999999999999999999999999999988642
Q ss_pred hhcccccHHHHHHHHHHhh----hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEec-CCC
Q 001162 916 NKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT-SRP 990 (1134)
Q Consensus 916 ~~~~G~se~~v~~lf~~A~----~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatT-n~p 990 (1134)
....++.+++.+. .+...||||||+|.+. ....+.|+..|+. ..+++|++| ..|
T Consensus 73 ------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----------~~~q~~LL~~le~----~~iilI~att~n~ 131 (413)
T PRK13342 73 ------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----------KAQQDALLPHVED----GTITLIGATTENP 131 (413)
T ss_pred ------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----------HHHHHHHHHHhhc----CcEEEEEeCCCCh
Confidence 2345667777663 2356799999999983 3345667766652 345555554 444
Q ss_pred -CccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccC--CC-C-CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHH
Q 001162 991 -DLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL--PL-A-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHE 1065 (1134)
Q Consensus 991 -~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~--~~-~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~ 1065 (1134)
..+++++++ |+ ..+.|++++.++...+++..+... ++ . .+..++.+++.+.| ..+.+.+++..+...
T Consensus 132 ~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~~---- 203 (413)
T PRK13342 132 SFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAALG---- 203 (413)
T ss_pred hhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHc----
Confidence 458999999 77 678999999999999999876542 11 1 22224555555533 223333333322211
Q ss_pred HHhccCCCCCCCcccccHHHHHHHHhhc
Q 001162 1066 ILNNIDSNEPGKMPVITDALLKSIASKA 1093 (1134)
Q Consensus 1066 ~~~~~~~~~~~~~~~it~e~l~~al~~~ 1093 (1134)
...|+.+++..++...
T Consensus 204 ------------~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 204 ------------VDSITLELLEEALQKR 219 (413)
T ss_pred ------------cCCCCHHHHHHHHhhh
Confidence 1358888888887653
No 117
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.5e-13 Score=169.30 Aligned_cols=187 Identities=20% Similarity=0.245 Sum_probs=134.4
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCc------------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------------ 905 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~------------ 905 (1134)
+.+..|++|+|++.+++.|+..+... +.+..+||+||||||||++|+++|+.++..
T Consensus 10 yRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~ 77 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCS 77 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCch
Confidence 34578999999999999998887632 223456999999999999999999988653
Q ss_pred ------------EEEEeCcccchhcccccHHHHHHHHHHhh----hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHh
Q 001162 906 ------------FISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 969 (1134)
Q Consensus 906 ------------~i~i~~~el~~~~~G~se~~v~~lf~~A~----~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL 969 (1134)
++++++.+ ...-..+|++.+.+. .+...|+||||+|.| .....+.||
T Consensus 78 sC~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----------T~eAqNALL 140 (944)
T PRK14949 78 SCVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----------SRSSFNALL 140 (944)
T ss_pred HHHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----------CHHHHHHHH
Confidence 12222211 012345666665543 244579999999998 467889999
Q ss_pred hhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcH
Q 001162 970 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSG 1048 (1134)
Q Consensus 970 ~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg 1048 (1134)
+.|+ +....+.||++|+.+..|.+.+++ |+ ..+.|.+++.++....++.++...++. .+..+..|++.+.| +.
T Consensus 141 KtLE--EPP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~ 214 (944)
T PRK14949 141 KTLE--EPPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SM 214 (944)
T ss_pred HHHh--ccCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 9998 445567777778888888889998 65 568999999999999999888765543 23346677777765 45
Q ss_pred HHHHHHHHHHH
Q 001162 1049 ADLQALLSDAQ 1059 (1134)
Q Consensus 1049 ~dl~~l~~~A~ 1059 (1134)
+++.++|..+.
T Consensus 215 R~ALnLLdQal 225 (944)
T PRK14949 215 RDALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHHH
Confidence 56556665433
No 118
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1e-13 Score=164.13 Aligned_cols=223 Identities=24% Similarity=0.292 Sum_probs=157.5
Q ss_pred CCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccch--------
Q 001162 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-------- 916 (1134)
Q Consensus 845 ~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~-------- 916 (1134)
+=-|++++|+++.+++.-.... +.....=++|+||||+|||+|++.+|+.+|..|+.++..-+.+
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 4468999999999998743211 1122335889999999999999999999999999998765432
Q ss_pred -hcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccc-------------cccccEE
Q 001162 917 -KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV-------------EVLTGVF 982 (1134)
Q Consensus 917 -~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~-------------~~~~~v~ 982 (1134)
.|+|.....+-+-+.+|...+| +++|||||.+.....++..+ .||..||-- ...+.|+
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPaS-------ALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPAS-------ALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChHH-------HHHhhcCHhhcCchhhccccCccchhheE
Confidence 5999999999999999999988 88899999997654333322 445444421 2345799
Q ss_pred EEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHH-----ccCCCCC---cccHHHHHHhccCCcH------
Q 001162 983 VFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVIS-----RKLPLAD---DVDLEAIAHMTEGFSG------ 1048 (1134)
Q Consensus 983 vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~-----~~~~~~~---~vd~~~La~~t~g~sg------ 1048 (1134)
||||.|..+.|+.+|+. |+. +|.++-|+.++.++|.+.++ +..++.. .+..++|-.....||.
T Consensus 469 FiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~ 545 (782)
T COG0466 469 FIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRN 545 (782)
T ss_pred EEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhH
Confidence 99999999999999999 885 78999999999999998764 3444431 2334555544444542
Q ss_pred --HHHHHHHHHHHHHHHHHHHhccCCCCCCCc-ccccHHHHHHHHhhcC
Q 001162 1049 --ADLQALLSDAQLSAVHEILNNIDSNEPGKM-PVITDALLKSIASKAR 1094 (1134)
Q Consensus 1049 --~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~-~~it~e~l~~al~~~~ 1094 (1134)
+.|..+|+.++.. .+... ... ..|+..++..-+...+
T Consensus 546 LeR~i~ki~RK~~~~----i~~~~-----~k~~~~i~~~~l~~yLG~~~ 585 (782)
T COG0466 546 LEREIAKICRKAAKK----ILLKK-----EKSIVKIDEKNLKKYLGVPV 585 (782)
T ss_pred HHHHHHHHHHHHHHH----HHhcC-----cccceeeCHHHHHHHhCCcc
Confidence 3444555544433 33211 111 2577778887775543
No 119
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=9.6e-14 Score=167.18 Aligned_cols=205 Identities=17% Similarity=0.202 Sum_probs=146.4
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCc------------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------------ 905 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~------------ 905 (1134)
+.+..|++++|++.+++.|...+... +.+..+||+||+|||||++|+++|+.++..
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 34678999999999999999888642 233458999999999999999999988542
Q ss_pred ------------EEEEeCcccchhcccccHHHHHHHHHHhh----hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHh
Q 001162 906 ------------FISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 969 (1134)
Q Consensus 906 ------------~i~i~~~el~~~~~G~se~~v~~lf~~A~----~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL 969 (1134)
+++++++. ...-+.+|++.+.+. .+...|+||||+|.| +....|.||
T Consensus 78 ~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l-----------s~~a~naLL 140 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHML-----------SGHSFNALL 140 (509)
T ss_pred HHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhc-----------CHHHHHHHH
Confidence 55555432 123345777776553 244579999999998 345788999
Q ss_pred hhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcH
Q 001162 970 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSG 1048 (1134)
Q Consensus 970 ~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg 1048 (1134)
+.|+. ..+.+.||.+|+.+..+.+.+++ |+ ..+.|.+++.++....++.++++.++. ++..+..+++.+.| +.
T Consensus 141 k~LEe--pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-sl 214 (509)
T PRK14958 141 KTLEE--PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SV 214 (509)
T ss_pred HHHhc--cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 99983 44567777777888888888888 66 566889999999998888888876654 33346677777764 56
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhh
Q 001162 1049 ADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASK 1092 (1134)
Q Consensus 1049 ~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~ 1092 (1134)
+++.+++..+... +...||.+++...+..
T Consensus 215 R~al~lLdq~ia~---------------~~~~It~~~V~~~lg~ 243 (509)
T PRK14958 215 RDALSLLDQSIAY---------------GNGKVLIADVKTMLGT 243 (509)
T ss_pred HHHHHHHHHHHhc---------------CCCCcCHHHHHHHHCC
Confidence 6666665543211 0124777777776643
No 120
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=8e-14 Score=163.62 Aligned_cols=204 Identities=22% Similarity=0.319 Sum_probs=147.8
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccc--------
Q 001162 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-------- 915 (1134)
Q Consensus 844 ~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~-------- 915 (1134)
+|=-||+++|+++.+++.-... .+-..+.-++|+||||+|||+++++||+.+|..|+.++..-+-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kL-------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKL-------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhh-------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 3457999999999999874321 1222334588999999999999999999999999999875443
Q ss_pred -hhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccc-------------cccccE
Q 001162 916 -NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV-------------EVLTGV 981 (1134)
Q Consensus 916 -~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~-------------~~~~~v 981 (1134)
..|+|.....+-+.++..+-.+| +++|||+|++...- .+.... .||..||-- -...+|
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~----qGDPas---ALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGH----QGDPAS---ALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCC----CCChHH---HHHHhcChhhccchhhhccccccchhhe
Confidence 25999999999999999998888 88899999997322 222222 455554421 124579
Q ss_pred EEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHH-----ccCCCCC---ccc---HHHH-HHhccCCcH-
Q 001162 982 FVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVIS-----RKLPLAD---DVD---LEAI-AHMTEGFSG- 1048 (1134)
Q Consensus 982 ~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~-----~~~~~~~---~vd---~~~L-a~~t~g~sg- 1048 (1134)
+||||.|..+.|.++|+. |+. +|.++-|..++...|-+.++ +..++.. ++. +..| -+++. -+|
T Consensus 556 LFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~Ycr-EaGV 631 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCR-EAGV 631 (906)
T ss_pred EEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHH-HHhH
Confidence 999999999999999999 885 78999999999999998775 2333331 111 2222 22222 222
Q ss_pred ----HHHHHHHHHHHHHHHHHH
Q 001162 1049 ----ADLQALLSDAQLSAVHEI 1066 (1134)
Q Consensus 1049 ----~dl~~l~~~A~~~a~~~~ 1066 (1134)
..|.++|+.+++.-++..
T Consensus 632 RnLqk~iekI~Rk~Al~vv~~~ 653 (906)
T KOG2004|consen 632 RNLQKQIEKICRKVALKVVEGE 653 (906)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 567788888888777665
No 121
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.1e-13 Score=164.03 Aligned_cols=187 Identities=19% Similarity=0.244 Sum_probs=140.4
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcC--------------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-------------- 903 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~-------------- 903 (1134)
+.+..|++++|++.+++.|...+... +.+.++||+||+|+|||++|+.+|+.++
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 34678999999999999998776532 3445799999999999999999998652
Q ss_pred ----------CcEEEEeCcccchhcccccHHHHHHHHHHhhh----cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHh
Q 001162 904 ----------LRFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 969 (1134)
Q Consensus 904 ----------~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~----~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL 969 (1134)
..++++++++- ..-+.+|++.+.+.. +.+.|++|||+|.| ....+|.|+
T Consensus 75 ~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L-----------s~~A~NaLL 137 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHML-----------SNSAFNALL 137 (491)
T ss_pred HHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhC-----------CHHHHHHHH
Confidence 24566666431 234568888877643 34569999999998 345788999
Q ss_pred hhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcH
Q 001162 970 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSG 1048 (1134)
Q Consensus 970 ~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg 1048 (1134)
+.|+. +...+.+|.+|+.++.+.+.+++ |+ ..+.|.+++.++....++.++++.++. ++..++.|++.++| +.
T Consensus 138 K~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-sl 211 (491)
T PRK14964 138 KTLEE--PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SM 211 (491)
T ss_pred HHHhC--CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 99983 44567777778888889999998 55 467999999999999999988877654 34446777777764 66
Q ss_pred HHHHHHHHHHH
Q 001162 1049 ADLQALLSDAQ 1059 (1134)
Q Consensus 1049 ~dl~~l~~~A~ 1059 (1134)
+++.+++..+.
T Consensus 212 R~alslLdqli 222 (491)
T PRK14964 212 RNALFLLEQAA 222 (491)
T ss_pred HHHHHHHHHHH
Confidence 66666555443
No 122
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=3.3e-13 Score=163.26 Aligned_cols=196 Identities=17% Similarity=0.197 Sum_probs=141.0
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc------------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~------------ 619 (1134)
+|++++|.+..++.+.+.+.. ...+..+||+||+|||||++++.+++.+.....
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~--------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDG--------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 477888988888777665421 122355799999999999999999999864211
Q ss_pred ------eeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001162 620 ------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1134)
Q Consensus 620 ------~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1134)
....++.++... ....++++..+.............|+||||+|.|.. .-.+.|++.
T Consensus 80 r~I~~G~h~DviEIDAas--~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~---------------~A~NALLKt 142 (830)
T PRK07003 80 REIDEGRFVDYVEMDAAS--NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN---------------HAFNAMLKT 142 (830)
T ss_pred HHHhcCCCceEEEecccc--cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH---------------HHHHHHHHH
Confidence 011344444432 223344444443332222223456999999999841 335566667
Q ss_pred HHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhc
Q 001162 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1134)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~t 773 (1134)
+++... .+.||.+||.++.|.+.+++ |+. +|.|..++.++..+.|+..+...++.++++.+..|+..+
T Consensus 143 LEEPP~---------~v~FILaTtd~~KIp~TIrS--RCq-~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A 210 (830)
T PRK07003 143 LEEPPP---------HVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAA 210 (830)
T ss_pred HHhcCC---------CeEEEEEECChhhccchhhh--heE-EEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 776543 47899999999999999999 774 899999999999999999998888999999999999999
Q ss_pred CCCChhhHHHHHHHHHHH
Q 001162 774 DGYDAYDLEILVDRTVHA 791 (1134)
Q Consensus 774 eG~s~~DL~~Lv~~a~~~ 791 (1134)
+| +.++..++++.++..
T Consensus 211 ~G-smRdALsLLdQAia~ 227 (830)
T PRK07003 211 QG-SMRDALSLTDQAIAY 227 (830)
T ss_pred CC-CHHHHHHHHHHHHHh
Confidence 98 677888887777643
No 123
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=2.1e-13 Score=160.01 Aligned_cols=195 Identities=18% Similarity=0.241 Sum_probs=138.0
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc------------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~------------ 619 (1134)
+|.+++|.+..+..+...+.. ...+..+||+||+|||||++|+.+|+.+.....
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~--------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKS--------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 477888888877766554422 112345899999999999999999999874321
Q ss_pred ------eeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001162 620 ------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1134)
Q Consensus 620 ------~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1134)
....++.+++.. ......++..+..+..........|+||||+|.|.. ...+.|+..
T Consensus 82 ~~i~~g~~~dviEIdaas--~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~---------------~A~NALLKt 144 (484)
T PRK14956 82 LEITKGISSDVLEIDAAS--NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD---------------QSFNALLKT 144 (484)
T ss_pred HHHHccCCccceeechhh--cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH---------------HHHHHHHHH
Confidence 011233444322 112333333333332222233456999999999841 335556666
Q ss_pred HHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhc
Q 001162 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1134)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~t 773 (1134)
+++... .+++|.+|+.++.+.+.+++ |+. ++.|.+++.++..+.++..+...++.++++.+..|+..+
T Consensus 145 LEEPp~---------~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S 212 (484)
T PRK14956 145 LEEPPA---------HIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKG 212 (484)
T ss_pred hhcCCC---------ceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 665332 48888899999999999999 765 789999999999999999998888999999999999999
Q ss_pred CCCChhhHHHHHHHHHH
Q 001162 774 DGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 774 eG~s~~DL~~Lv~~a~~ 790 (1134)
+| +.||...+++.++.
T Consensus 213 ~G-d~RdAL~lLeq~i~ 228 (484)
T PRK14956 213 DG-SVRDMLSFMEQAIV 228 (484)
T ss_pred CC-hHHHHHHHHHHHHH
Confidence 98 78888888887663
No 124
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=3.3e-13 Score=164.48 Aligned_cols=184 Identities=20% Similarity=0.278 Sum_probs=136.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC--------------
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL-------------- 904 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~-------------- 904 (1134)
.+..|++|+|++.+++.|...+... +.+..+||+||+|||||++|+++|+.++.
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 4578999999999999998887642 23345799999999999999999998865
Q ss_pred ----------cEEEEeCcccchhcccccHHHHHHHHHHhh----hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhh
Q 001162 905 ----------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLT 970 (1134)
Q Consensus 905 ----------~~i~i~~~el~~~~~G~se~~v~~lf~~A~----~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~ 970 (1134)
.++++++.. ...-+.+|++.+.+. .+...|+||||+|.| .....|.||+
T Consensus 79 C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-----------s~~a~NALLK 141 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-----------SRHSFNALLK 141 (647)
T ss_pred HHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-----------CHHHHHHHHH
Confidence 234444332 012345666666543 345679999999998 4568899999
Q ss_pred hcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHH
Q 001162 971 ELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGA 1049 (1134)
Q Consensus 971 ~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~ 1049 (1134)
.|+ +....++||.+|+.++.|.+.+++ |+ ..+.|.+++.++....++.+++..++. ++..+..|++.++| +.+
T Consensus 142 tLE--EPp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R 215 (647)
T PRK07994 142 TLE--EPPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMR 215 (647)
T ss_pred HHH--cCCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 998 555677777788889999999998 65 678999999999999999888765553 33446677777775 455
Q ss_pred HHHHHHHH
Q 001162 1050 DLQALLSD 1057 (1134)
Q Consensus 1050 dl~~l~~~ 1057 (1134)
+...++..
T Consensus 216 ~Al~lldq 223 (647)
T PRK07994 216 DALSLTDQ 223 (647)
T ss_pred HHHHHHHH
Confidence 55555543
No 125
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.53 E-value=1.8e-13 Score=174.04 Aligned_cols=184 Identities=22% Similarity=0.313 Sum_probs=135.8
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc----------CCcEEEEe
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~----------~~~~i~i~ 910 (1134)
..++++.|.+...+.+.+.+.. +...+++|+||||||||++|+.+|..+ +.+++.++
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 5788999998876666555432 223479999999999999999999876 35688888
Q ss_pred Ccccch--hcccccHHHHHHHHHHhhh-cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEec
Q 001162 911 GPELLN--KYIGASEQAVRDIFSKATA-AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT 987 (1134)
Q Consensus 911 ~~el~~--~~~G~se~~v~~lf~~A~~-~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatT 987 (1134)
.+.+.. +|.|+.+..++.+|+.++. ..++||||||+|.+.+.++.... . .+.+.|+..| ..+.+.+||||
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~--~-d~~n~Lkp~l----~~G~l~~IgaT 323 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ--G-DAANLLKPAL----ARGELRTIAAT 323 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc--c-cHHHHhhHHh----hCCCeEEEEec
Confidence 887763 6889999999999998864 46789999999999876543221 1 1223343333 24568888888
Q ss_pred CCCCc-----cchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCC----CC-CcccHHHHHHhccCCc
Q 001162 988 SRPDL-----LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLP----LA-DDVDLEAIAHMTEGFS 1047 (1134)
Q Consensus 988 n~p~~-----ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~----~~-~~vd~~~La~~t~g~s 1047 (1134)
+..+. +|+||.| ||. .|.++.|+.+++..||+.+.+.+. +. .+..+..++..+.+|-
T Consensus 324 T~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred CHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 76432 8999999 996 789999999999999877665432 21 3445677777777665
No 126
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.52 E-value=3.2e-13 Score=145.86 Aligned_cols=182 Identities=20% Similarity=0.276 Sum_probs=126.7
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC------cEEEEe
Q 001162 837 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------RFISVK 910 (1134)
Q Consensus 837 ~~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~------~~i~i~ 910 (1134)
++.+..++++.|++.+++.|...+.. +...++|||||||||||+.|+++|+++.. .+.+.+
T Consensus 29 KYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln 95 (346)
T KOG0989|consen 29 KYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN 95 (346)
T ss_pred HhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc
Confidence 34567899999999999999998764 12348999999999999999999999865 345556
Q ss_pred CcccchhcccccHHHHHHHHHHhhh------cC----CeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccccccc
Q 001162 911 GPELLNKYIGASEQAVRDIFSKATA------AA----PCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTG 980 (1134)
Q Consensus 911 ~~el~~~~~G~se~~v~~lf~~A~~------~~----P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~ 980 (1134)
.++-.+.-++. ..+ .-|..... .. +.|++|||+|+| +....+.|...||.. ...
T Consensus 96 aSderGisvvr--~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-----------tsdaq~aLrr~mE~~--s~~ 159 (346)
T KOG0989|consen 96 ASDERGISVVR--EKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSM-----------TSDAQAALRRTMEDF--SRT 159 (346)
T ss_pred ccccccccchh--hhh-cCHHHHhhccccccCCCCCcceEEEEechhhh-----------hHHHHHHHHHHHhcc--ccc
Confidence 66544322211 111 11222211 11 269999999998 556778999999853 345
Q ss_pred EEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHH
Q 001162 981 VFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQA 1053 (1134)
Q Consensus 981 v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~ 1053 (1134)
+.|+..||.++.|...+.+ |+.+ +.|+....+...+.|+.++.+.++. +|.+++..... .+++||+.
T Consensus 160 trFiLIcnylsrii~pi~S--RC~K-frFk~L~d~~iv~rL~~Ia~~E~v~--~d~~al~~I~~-~S~GdLR~ 226 (346)
T KOG0989|consen 160 TRFILICNYLSRIIRPLVS--RCQK-FRFKKLKDEDIVDRLEKIASKEGVD--IDDDALKLIAK-ISDGDLRR 226 (346)
T ss_pred eEEEEEcCChhhCChHHHh--hHHH-hcCCCcchHHHHHHHHHHHHHhCCC--CCHHHHHHHHH-HcCCcHHH
Confidence 6666779999998888888 7764 4777778888888899988887764 34444433333 45556654
No 127
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.52 E-value=1.2e-13 Score=160.99 Aligned_cols=188 Identities=19% Similarity=0.227 Sum_probs=132.3
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCc---------------
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR--------------- 905 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~--------------- 905 (1134)
..|++|+|++.+++.|+..+.....+. ...+.+.+.++||+||+|+|||++|+++|+.+...
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 368999999999999999998654322 12233456679999999999999999999876432
Q ss_pred --------EEEEeCcccchhcccccHHHHHHHHHHhhh----cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcc
Q 001162 906 --------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELD 973 (1134)
Q Consensus 906 --------~i~i~~~el~~~~~G~se~~v~~lf~~A~~----~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld 973 (1134)
+..+.+.. . .-.-..+|++++.+.. +...|+||||+|.+ .....|.||+.|+
T Consensus 79 ~~~~~hpD~~~i~~~~---~--~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m-----------~~~aanaLLk~LE 142 (394)
T PRK07940 79 VLAGTHPDVRVVAPEG---L--SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRL-----------TERAANALLKAVE 142 (394)
T ss_pred HhcCCCCCEEEecccc---c--cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhc-----------CHHHHHHHHHHhh
Confidence 11221110 1 1123557888887743 34569999999999 3446688999997
Q ss_pred cccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHH
Q 001162 974 GVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQA 1053 (1134)
Q Consensus 974 ~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~ 1053 (1134)
. +.+++++|.+|+.++.+.|++++ |+ ..++|++|+.++..+++.. ..++. ......++..++|..|..++-
T Consensus 143 e--p~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~---~~~~~-~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 143 E--PPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVR---RDGVD-PETARRAARASQGHIGRARRL 213 (394)
T ss_pred c--CCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHH---hcCCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 3 34445555555558999999999 66 5889999999998777763 22332 334567888999988877665
Q ss_pred HHH
Q 001162 1054 LLS 1056 (1134)
Q Consensus 1054 l~~ 1056 (1134)
+..
T Consensus 214 ~~~ 216 (394)
T PRK07940 214 ATD 216 (394)
T ss_pred hcC
Confidence 443
No 128
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=2.6e-13 Score=165.60 Aligned_cols=184 Identities=25% Similarity=0.335 Sum_probs=137.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcC---------------
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS--------------- 903 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~--------------- 903 (1134)
.+..|++++|++.+.+.|+..+... +.+..+||+||+|||||++|+.+|+.++
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 4578999999999999999887642 2344689999999999999999999874
Q ss_pred ---------CcEEEEeCcccchhcccccHHHHHHHHHHhh----hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhh
Q 001162 904 ---------LRFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLT 970 (1134)
Q Consensus 904 ---------~~~i~i~~~el~~~~~G~se~~v~~lf~~A~----~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~ 970 (1134)
.+++.++++. +..-..+|++.+.+. .+...|+||||+|.| +....+.|++
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L-----------t~~a~naLLK 141 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML-----------STGAFNALLK 141 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHHHHHHH
Confidence 2455555432 234466788877764 234579999999998 3457889999
Q ss_pred hcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHH
Q 001162 971 ELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGA 1049 (1134)
Q Consensus 971 ~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~ 1049 (1134)
.|+. +...+++|.+|+.++.+.+.+++ |+. .+.|++|+.++....++.++++.++. ++..+..++..+.| +.+
T Consensus 142 tLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R 215 (559)
T PRK05563 142 TLEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMR 215 (559)
T ss_pred HhcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 9973 44567777777889999999998 664 57899999999999999988877654 33346667777665 556
Q ss_pred HHHHHHHH
Q 001162 1050 DLQALLSD 1057 (1134)
Q Consensus 1050 dl~~l~~~ 1057 (1134)
++.+++..
T Consensus 216 ~al~~Ldq 223 (559)
T PRK05563 216 DALSILDQ 223 (559)
T ss_pred HHHHHHHH
Confidence 65555443
No 129
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.52 E-value=8e-14 Score=177.84 Aligned_cols=165 Identities=25% Similarity=0.367 Sum_probs=128.0
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc----------CCcEEEEe
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~----------~~~~i~i~ 910 (1134)
..++++.|.+...+.+.+.+.. +...+++|+||||||||++|+++|..+ +.+++.++
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 4678899998876666665543 223479999999999999999999987 78899999
Q ss_pred Ccccc--hhcccccHHHHHHHHHHhh-hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEec
Q 001162 911 GPELL--NKYIGASEQAVRDIFSKAT-AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT 987 (1134)
Q Consensus 911 ~~el~--~~~~G~se~~v~~lf~~A~-~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatT 987 (1134)
...++ .+|.|+.+..++.+|+.+. ...|+||||||+|.|.+.++.+.. ..+.+.|...| ..+.+.+||||
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~---~d~~~~lkp~l----~~g~l~~IgaT 314 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA---MDAGNMLKPAL----ARGELHCVGAT 314 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccc---hhHHHHhcchh----hcCCCeEEEcC
Confidence 88876 4688999999999999864 457899999999999866432221 12333443333 34568888888
Q ss_pred CCCCc-----cchhhcCcCcccceeecCCCCHHHHHHHHHHHHccC
Q 001162 988 SRPDL-----LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL 1028 (1134)
Q Consensus 988 n~p~~-----ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~ 1028 (1134)
+..+. +|+++.| ||+ .|.++.|+.+++..|++.+....
T Consensus 315 t~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 315 TLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred CCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 88763 8999999 998 57899999999999999876554
No 130
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.51 E-value=2.5e-13 Score=159.08 Aligned_cols=237 Identities=21% Similarity=0.224 Sum_probs=154.3
Q ss_pred CCChhHHHHHHHHHHhcCCCchhHHhh---CCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccc-hhcccc
Q 001162 846 VGGLTDIQNAIKEMIELPSKFPNIFAQ---APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-NKYIGA 921 (1134)
Q Consensus 846 i~gl~~~k~~l~~~i~~~~~~~~~~~~---~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~-~~~~G~ 921 (1134)
|+|++.+++.+...+..+.+....... ....+..++||+||||||||++|+++|..++.+|+.++++.+. ..|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 899999999997776532221110000 1112456899999999999999999999999999999998875 368887
Q ss_pred cHH-HHHHHHHHh----hhcCCeEEEEcCcccccCCCCCCC---CcchhhHHHhHhhhccccc-----------ccccEE
Q 001162 922 SEQ-AVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVE-----------VLTGVF 982 (1134)
Q Consensus 922 se~-~v~~lf~~A----~~~~P~VLfiDEid~l~~~r~~~~---~~~~~rv~~~lL~~ld~~~-----------~~~~v~ 982 (1134)
... .+..+++.+ ....++||||||||++..++++.+ ......+.+.||+.||+-. .....+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 643 345555433 235678999999999987643211 1112358889999998631 011244
Q ss_pred EEEecCCCC-----------------------------------------------c-----cchhhcCcCcccceeecC
Q 001162 983 VFAATSRPD-----------------------------------------------L-----LDAALLRPGRLDRLLFCD 1010 (1134)
Q Consensus 983 vIatTn~p~-----------------------------------------------~-----ld~allrpgRfd~~i~~~ 1010 (1134)
+|.|+|-.. . +.|+++. |+|.++.|.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f~ 310 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATLE 310 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeecC
Confidence 444444300 0 2344544 999999999
Q ss_pred CCCHHHHHHHHHH----HHc-------cCCCCCccc---HHHHHHh--ccCCcHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 001162 1011 FPSPRERLDILKV----ISR-------KLPLADDVD---LEAIAHM--TEGFSGADLQALLSDAQLSAVHEILNNIDSNE 1074 (1134)
Q Consensus 1011 ~p~~~er~~Il~~----~~~-------~~~~~~~vd---~~~La~~--t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~ 1074 (1134)
+.+.+++.+|+.. +++ ..++.-.++ ++.|++. ..++..+.|+.++....+..+.+..+. .
T Consensus 311 ~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p~~----~ 386 (412)
T PRK05342 311 ELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELPSR----E 386 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhcccc----C
Confidence 9999999999972 332 223322233 4556654 445667899998888887777654431 1
Q ss_pred CCCcccccHHHHHH
Q 001162 1075 PGKMPVITDALLKS 1088 (1134)
Q Consensus 1075 ~~~~~~it~e~l~~ 1088 (1134)
......||.+.+..
T Consensus 387 ~~~~v~I~~~~v~~ 400 (412)
T PRK05342 387 DVEKVVITKEVVEG 400 (412)
T ss_pred CCceEEECHHHhcc
Confidence 12345688877753
No 131
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.51 E-value=2.6e-13 Score=170.77 Aligned_cols=226 Identities=23% Similarity=0.261 Sum_probs=156.7
Q ss_pred CCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccc---------
Q 001162 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL--------- 915 (1134)
Q Consensus 845 ~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~--------- 915 (1134)
+..|++++|+.+.+++..... .+......++|+||||||||++++.+|+.++.+|+.++.....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 478999999999888763221 1112334699999999999999999999999999999876542
Q ss_pred hhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccc-------------cccccEE
Q 001162 916 NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV-------------EVLTGVF 982 (1134)
Q Consensus 916 ~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~-------------~~~~~v~ 982 (1134)
..|.|.....+...+..+...+| ||||||+|++.+.... ...+.|+..||.- ...++++
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g-------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG-------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC-------CHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 24777777777777777665555 8999999999654221 1334566655521 1346899
Q ss_pred EEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHc-----cCCCC---CcccHHHHHHh----ccCCcHHH
Q 001162 983 VFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISR-----KLPLA---DDVDLEAIAHM----TEGFSGAD 1050 (1134)
Q Consensus 983 vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~-----~~~~~---~~vd~~~La~~----t~g~sg~d 1050 (1134)
+|||+|.. .|+++|++ ||. +|.|+.|+.++..+|.+.++- +.++. -.++.+.+... +..+..+.
T Consensus 468 ~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~ 543 (784)
T PRK10787 468 FVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRS 543 (784)
T ss_pred EEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcH
Confidence 99999887 49999999 995 789999999999999987763 11221 12333333333 33344578
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhc
Q 001162 1051 LQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 1093 (1134)
Q Consensus 1051 l~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~ 1093 (1134)
|+..+...+..++.+.+... ......|+.+++...+...
T Consensus 544 LeR~I~~i~r~~l~~~~~~~----~~~~v~v~~~~~~~~lg~~ 582 (784)
T PRK10787 544 LEREISKLCRKAVKQLLLDK----SLKHIEINGDNLHDYLGVQ 582 (784)
T ss_pred HHHHHHHHHHHHHHHHHhcC----CCceeeecHHHHHHHhCCC
Confidence 87777776666665544221 1233578999999988644
No 132
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=2.2e-13 Score=165.04 Aligned_cols=187 Identities=20% Similarity=0.255 Sum_probs=137.2
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCc------------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------------ 905 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~------------ 905 (1134)
+.+..|++|+|++.+++.|...+... +.+.++||+||+|||||++|+++|+.++..
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 44678999999999999999987742 334578999999999999999999987532
Q ss_pred ------------EEEEeCcccchhcccccHHHHHHHHHHhh----hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHh
Q 001162 906 ------------FISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 969 (1134)
Q Consensus 906 ------------~i~i~~~el~~~~~G~se~~v~~lf~~A~----~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL 969 (1134)
+++++.+. +.....+|++++.+. .+...|+||||+|.| ....++.||
T Consensus 78 sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L-----------s~~A~NALL 140 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML-----------SKSAFNAML 140 (709)
T ss_pred HHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc-----------CHHHHHHHH
Confidence 23333221 223456788887653 234579999999987 345788999
Q ss_pred hhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcH
Q 001162 970 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSG 1048 (1134)
Q Consensus 970 ~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg 1048 (1134)
+.|+. ..+.+.||.+|+.+..+.+.+++ |+ ..+.|+.++.++....++.++++.++. ++..+..|++.+. -+.
T Consensus 141 KtLEE--Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~-Gsl 214 (709)
T PRK08691 141 KTLEE--PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA-GSM 214 (709)
T ss_pred HHHHh--CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC-CCH
Confidence 99973 34567777788888888888887 66 456788999999999999999877654 3334677777775 356
Q ss_pred HHHHHHHHHHH
Q 001162 1049 ADLQALLSDAQ 1059 (1134)
Q Consensus 1049 ~dl~~l~~~A~ 1059 (1134)
+++.+++..+.
T Consensus 215 RdAlnLLDqai 225 (709)
T PRK08691 215 RDALSLLDQAI 225 (709)
T ss_pred HHHHHHHHHHH
Confidence 66666665443
No 133
>PLN03025 replication factor C subunit; Provisional
Probab=99.50 E-value=2.7e-13 Score=155.53 Aligned_cols=182 Identities=18% Similarity=0.184 Sum_probs=126.5
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcC-----CcEEEEeC
Q 001162 837 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-----LRFISVKG 911 (1134)
Q Consensus 837 ~~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~-----~~~i~i~~ 911 (1134)
++.+..++++.|.+++.+.|+..+... ...++||+||||||||++|+++|+++. ..++++++
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIARDG-------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 345678999999999999988775531 123799999999999999999999872 35777777
Q ss_pred cccchhcccccHHHHHHHHHHh-h------hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEE
Q 001162 912 PELLNKYIGASEQAVRDIFSKA-T------AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVF 984 (1134)
Q Consensus 912 ~el~~~~~G~se~~v~~lf~~A-~------~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vI 984 (1134)
++..+ ...+++..+.. . .+.+.|++|||+|.+. ....+.|+..|+... ..+.++
T Consensus 73 sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-----------~~aq~aL~~~lE~~~--~~t~~i 133 (319)
T PLN03025 73 SDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-----------SGAQQALRRTMEIYS--NTTRFA 133 (319)
T ss_pred ccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-----------HHHHHHHHHHHhccc--CCceEE
Confidence 76432 12344443321 1 1346799999999983 334566777775322 334455
Q ss_pred EecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHH
Q 001162 985 AATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSD 1057 (1134)
Q Consensus 985 atTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~ 1057 (1134)
.+||.++.+.+++++ |+ ..+.|++|+.++....++.++++.++. ++..++.++..+. +|++.+++.
T Consensus 134 l~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~----gDlR~aln~ 200 (319)
T PLN03025 134 LACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTAD----GDMRQALNN 200 (319)
T ss_pred EEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHH
Confidence 677888888899998 65 478999999999999999988876653 2333555555544 566655443
No 134
>PRK04195 replication factor C large subunit; Provisional
Probab=99.50 E-value=2.6e-13 Score=164.04 Aligned_cols=189 Identities=25% Similarity=0.319 Sum_probs=133.2
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchh
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 917 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~ 917 (1134)
+.+..+++++|.+++++.|..++..... + .++.++||+||||||||++|+++|++++..++.+++++...
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~- 77 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT- 77 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc-
Confidence 4567899999999999999998764221 1 23568999999999999999999999999999999987532
Q ss_pred cccccHHHHHHHHHHhhh------cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCC
Q 001162 918 YIGASEQAVRDIFSKATA------AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPD 991 (1134)
Q Consensus 918 ~~G~se~~v~~lf~~A~~------~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~ 991 (1134)
...++.+...+.. ..+.||+|||+|.+.... ....++.|+..++. .+..||+++|.+.
T Consensus 78 -----~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~-------d~~~~~aL~~~l~~----~~~~iIli~n~~~ 141 (482)
T PRK04195 78 -----ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE-------DRGGARAILELIKK----AKQPIILTANDPY 141 (482)
T ss_pred -----HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc-------chhHHHHHHHHHHc----CCCCEEEeccCcc
Confidence 2334444443322 256799999999986421 12344566666642 2334555778888
Q ss_pred ccch-hhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHH
Q 001162 992 LLDA-ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQ 1059 (1134)
Q Consensus 992 ~ld~-allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~ 1059 (1134)
.+.+ .+++ |+ ..|.|++|+..++..+++.+++..++. ++..++.|+..+ ++|++.+++...
T Consensus 142 ~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s----~GDlR~ain~Lq 204 (482)
T PRK04195 142 DPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERS----GGDLRSAINDLQ 204 (482)
T ss_pred ccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHHHHH
Confidence 7776 5555 33 578999999999999999988776653 233355555554 567777666443
No 135
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.50 E-value=6.1e-13 Score=160.76 Aligned_cols=222 Identities=16% Similarity=0.199 Sum_probs=142.8
Q ss_pred cccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccC---Cce-eeEEEEEec
Q 001162 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH---KDL-VAHIVFVCC 629 (1134)
Q Consensus 554 ~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~---~~~-~~~~~~v~~ 629 (1134)
..|.|++..+++|...|...+.. ..+...++|+|+||||||++++.+++++... ... ...+++|+|
T Consensus 755 D~LPhREeEIeeLasfL~paIkg----------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC 824 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ----------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING 824 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc----------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC
Confidence 57888999999999988776531 1222335699999999999999999987532 111 266889999
Q ss_pred ccccccch-----------------hhHHHHHHHHHHHHh--hcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHH
Q 001162 630 SRLSLEKG-----------------PIIRQALSNFISEAL--DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFL 690 (1134)
Q Consensus 630 s~l~~~~~-----------------~~~~~~l~~~f~~a~--~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L 690 (1134)
..+..... ......+..+|.... .....||+|||+|.|... . +.+ |
T Consensus 825 m~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----------~-QDV---L 889 (1164)
T PTZ00112 825 MNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----------T-QKV---L 889 (1164)
T ss_pred CccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----------H-HHH---H
Confidence 66542211 112234555565542 233569999999999631 0 122 3
Q ss_pred HHHHHHhccccccccCCCcEEEEEecCC---CCCCChhhccCCCccc-cccCCCCCHHHHHHHHHHHhhhcccCCCHHHH
Q 001162 691 VDIMDEYGEKRKSSCGIGPIAFVASAQS---LEKIPQSLTSSGRFDF-HVQLPAPAASERKAILEHEIQRRSLECSDEIL 766 (1134)
Q Consensus 691 ~~~ld~~~~~~~~~~~~~~V~vIattn~---~~~Ld~aL~~~gRF~~-~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l 766 (1134)
..+++...... ..+.|||.+|. ++.+++.+++ ||.. .+.|++|+.+++.+||+..+......++++++
T Consensus 890 YnLFR~~~~s~------SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAI 961 (1164)
T PTZ00112 890 FTLFDWPTKIN------SKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAI 961 (1164)
T ss_pred HHHHHHhhccC------CeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 33333221111 14899999987 4456788888 5543 58899999999999999988764445789998
Q ss_pred HHHhhhcCC--CChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhc
Q 001162 767 LDVASKCDG--YDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1134)
Q Consensus 767 ~~la~~teG--~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1134)
..+|..... .++|..-.+|++|+..+ ....++.+|+.+|...
T Consensus 962 ELIArkVAq~SGDARKALDILRrAgEik--------------egskVT~eHVrkAlee 1005 (1164)
T PTZ00112 962 QLCARKVANVSGDIRKALQICRKAFENK--------------RGQKIVPRDITEATNQ 1005 (1164)
T ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHhhc--------------CCCccCHHHHHHHHHH
Confidence 888874432 24444445555555321 1125777787777643
No 136
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.50 E-value=6.7e-13 Score=152.06 Aligned_cols=241 Identities=20% Similarity=0.279 Sum_probs=159.6
Q ss_pred CCCChhHHHHHHHHHHhcCCCchhHHhh-CCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccch-hccc-c
Q 001162 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQ-APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIG-A 921 (1134)
Q Consensus 845 ~i~gl~~~k~~l~~~i~~~~~~~~~~~~-~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~-~~~G-~ 921 (1134)
-|+|++++++.+...+........+... ....++.++||+||||||||++|+++|..++.+|+.+++.++.. .|.| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 3789999999998777643222111110 01224579999999999999999999999999999999998874 7888 5
Q ss_pred cHHHHHHHHHHhh-------------------------------------------------------------------
Q 001162 922 SEQAVRDIFSKAT------------------------------------------------------------------- 934 (1134)
Q Consensus 922 se~~v~~lf~~A~------------------------------------------------------------------- 934 (1134)
.+..++.+|+.|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 6777777777650
Q ss_pred ------------------------------------------------------------------------hcCCeEEE
Q 001162 935 ------------------------------------------------------------------------AAAPCLLF 942 (1134)
Q Consensus 935 ------------------------------------------------------------------------~~~P~VLf 942 (1134)
..+..|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01235999
Q ss_pred EcCcccccCCCCCCCCcc-hhhHHHhHhhhccccc--------ccccEEEEEecC----CCCccchhhcCcCcccceeec
Q 001162 943 FDEFDSIAPKRGHDNTGV-TDRVVNQFLTELDGVE--------VLTGVFVFAATS----RPDLLDAALLRPGRLDRLLFC 1009 (1134)
Q Consensus 943 iDEid~l~~~r~~~~~~~-~~rv~~~lL~~ld~~~--------~~~~v~vIatTn----~p~~ld~allrpgRfd~~i~~ 1009 (1134)
|||||+++.+.+.....+ ..-|...||..|+|-. ..++++|||+.. .|..+=|.|.- ||.-++.+
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEEC
Confidence 999999997653322223 3458899999998732 346799998764 46666688875 99999999
Q ss_pred CCCCHHHHHHHHH----HHH-------ccCCCC---CcccHHHHHHhc-------cCCcHHHHHHHHHHHHHHHHHHHHh
Q 001162 1010 DFPSPRERLDILK----VIS-------RKLPLA---DDVDLEAIAHMT-------EGFSGADLQALLSDAQLSAVHEILN 1068 (1134)
Q Consensus 1010 ~~p~~~er~~Il~----~~~-------~~~~~~---~~vd~~~La~~t-------~g~sg~dl~~l~~~A~~~a~~~~~~ 1068 (1134)
.+++.++..+||. .+. +..++. .+-.+.++|+.+ ++.-.+-|+.++......+.-+.
T Consensus 331 ~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~-- 408 (441)
T TIGR00390 331 QALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEA-- 408 (441)
T ss_pred CCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcC--
Confidence 9999999999993 222 222322 223355566554 33444555555444333322111
Q ss_pred ccCCCCCCCcccccHHHHHHHHhh
Q 001162 1069 NIDSNEPGKMPVITDALLKSIASK 1092 (1134)
Q Consensus 1069 ~~~~~~~~~~~~it~e~l~~al~~ 1092 (1134)
.. .......|+.+.+...+..
T Consensus 409 --p~-~~~~~v~I~~~~V~~~l~~ 429 (441)
T TIGR00390 409 --PD-LSGQNITIDADYVSKKLGA 429 (441)
T ss_pred --CC-CCCCEEEECHHHHHhHHHH
Confidence 11 1133456777777666543
No 137
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=3.7e-13 Score=163.81 Aligned_cols=184 Identities=18% Similarity=0.247 Sum_probs=134.4
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC-------------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------- 904 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~------------- 904 (1134)
+.+..|++++|++.+++.|...+... +.+..+||+||+|||||++|+++|+.++.
T Consensus 10 yRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p 77 (618)
T PRK14951 10 YRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP 77 (618)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence 34578999999999999999987642 23345799999999999999999998753
Q ss_pred ----------------cEEEEeCcccchhcccccHHHHHHHHHHhhh----cCCeEEEEcCcccccCCCCCCCCcchhhH
Q 001162 905 ----------------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRV 964 (1134)
Q Consensus 905 ----------------~~i~i~~~el~~~~~G~se~~v~~lf~~A~~----~~P~VLfiDEid~l~~~r~~~~~~~~~rv 964 (1134)
.++++++.. ...-+.+|++.+.+.. +...|++|||+|.| ....
T Consensus 78 Cg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L-----------s~~a 140 (618)
T PRK14951 78 CGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML-----------TNTA 140 (618)
T ss_pred CCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC-----------CHHH
Confidence 233333321 1223567787776532 23469999999998 4456
Q ss_pred HHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhc
Q 001162 965 VNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMT 1043 (1134)
Q Consensus 965 ~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t 1043 (1134)
.|.||+.|+ +....+.||.+|+.+..+.+.+++ |+ ..+.|..++.++....++.++++.++. ++..+..|++.+
T Consensus 141 ~NaLLKtLE--EPP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 141 FNAMLKTLE--EPPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred HHHHHHhcc--cCCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 889999997 344566677777788888888888 65 678999999999999999988776654 333467777777
Q ss_pred cCCcHHHHHHHHH
Q 001162 1044 EGFSGADLQALLS 1056 (1134)
Q Consensus 1044 ~g~sg~dl~~l~~ 1056 (1134)
+| +.+++.+++.
T Consensus 216 ~G-slR~al~lLd 227 (618)
T PRK14951 216 RG-SMRDALSLTD 227 (618)
T ss_pred CC-CHHHHHHHHH
Confidence 64 5555555543
No 138
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.49 E-value=4.3e-13 Score=144.93 Aligned_cols=196 Identities=20% Similarity=0.243 Sum_probs=138.6
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
...|.++.|.+....-+.+.+..-. -.++|||||||||||+.|+++|+++.........+...+.
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~---------------lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna 96 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRI---------------LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA 96 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcC---------------CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc
Confidence 3456777888877776666553311 1359999999999999999999998753333344555567
Q ss_pred ccccccchhhHH-HHHHHHHHHH--h---hcCC-eEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccc
Q 001162 630 SRLSLEKGPIIR-QALSNFISEA--L---DHAP-SIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRK 702 (1134)
Q Consensus 630 s~l~~~~~~~~~-~~l~~~f~~a--~---~~~P-sIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~ 702 (1134)
+...|....... +.+..+.... . ...| .|++|||.|.|.. .....|.+.|+.+..
T Consensus 97 SderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts---------------daq~aLrr~mE~~s~--- 158 (346)
T KOG0989|consen 97 SDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS---------------DAQAALRRTMEDFSR--- 158 (346)
T ss_pred cccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhH---------------HHHHHHHHHHhcccc---
Confidence 776665532211 1111111111 0 0112 5999999999962 345567777887654
Q ss_pred cccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHH
Q 001162 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE 782 (1134)
Q Consensus 703 ~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~ 782 (1134)
.+++|..||+.+.|+..+.+ |.. .|.|++...+.....|+....+.++.++++.+..+++.++| +-|+..
T Consensus 159 ------~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~Ai 228 (346)
T KOG0989|consen 159 ------TTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRRAI 228 (346)
T ss_pred ------ceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHHH
Confidence 37899999999999999998 766 88899999999999999999999999999999999999888 444444
Q ss_pred HHHHHH
Q 001162 783 ILVDRT 788 (1134)
Q Consensus 783 ~Lv~~a 788 (1134)
..++.+
T Consensus 229 t~Lqsl 234 (346)
T KOG0989|consen 229 TTLQSL 234 (346)
T ss_pred HHHHHh
Confidence 444443
No 139
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=4.1e-13 Score=160.71 Aligned_cols=195 Identities=16% Similarity=0.197 Sum_probs=141.1
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc------------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~------------ 619 (1134)
+|.+++|.+..++.+.+.+.. ...+..+||+||+|+|||++++.+|+.+.....
T Consensus 14 tFddVIGQe~vv~~L~~al~~--------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQ--------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHh--------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 577889998888877765532 122355899999999999999999999875210
Q ss_pred -----------eeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHH
Q 001162 620 -----------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTK 688 (1134)
Q Consensus 620 -----------~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~ 688 (1134)
....++.++... ....+.++..+..+..........|+||||+|.|.. ...+
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas--~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~---------------~AaN 142 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAAS--NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN---------------HAFN 142 (700)
T ss_pred ccHHHHHHHcCCCCcceEecccc--cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH---------------HHHH
Confidence 001344444432 233455555544443333334456999999999841 3345
Q ss_pred HHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHH
Q 001162 689 FLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLD 768 (1134)
Q Consensus 689 ~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~ 768 (1134)
.|++.+++... .+.||.+|+.++.|.+.++| |+. .+.|..++.++..+.|+..+...++.++++.+..
T Consensus 143 ALLKTLEEPP~---------~v~FILaTtep~kLlpTIrS--RCq-~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~ 210 (700)
T PRK12323 143 AMLKTLEEPPE---------HVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRL 210 (700)
T ss_pred HHHHhhccCCC---------CceEEEEeCChHhhhhHHHH--HHH-hcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 56666666432 47888889999999999999 764 8999999999999999998888888899999999
Q ss_pred HhhhcCCCChhhHHHHHHHHHH
Q 001162 769 VASKCDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 769 la~~teG~s~~DL~~Lv~~a~~ 790 (1134)
|+..++| +.++...+++.++.
T Consensus 211 IA~~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 211 LAQAAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred HHHHcCC-CHHHHHHHHHHHHH
Confidence 9998888 78888888877654
No 140
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.48 E-value=1.4e-12 Score=152.74 Aligned_cols=226 Identities=19% Similarity=0.236 Sum_probs=145.3
Q ss_pred ccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCC---ceeeEEEEEeccc
Q 001162 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCCSR 631 (1134)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~---~~~~~~~~v~~s~ 631 (1134)
.+.|.+..++++...+...+. ...+.+++|+||||||||++++++++.+.... .....+++++|..
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~-----------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILR-----------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHc-----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 678899999999998866543 12345699999999999999999999875321 1125678899976
Q ss_pred ccccch--h------------------hHHHHHHHHHHHHh-hcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHH
Q 001162 632 LSLEKG--P------------------IIRQALSNFISEAL-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFL 690 (1134)
Q Consensus 632 l~~~~~--~------------------~~~~~l~~~f~~a~-~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L 690 (1134)
...... . ...+.+..++.... ...+.||+|||+|.+.+. . . .++..|
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~--~------~----~~L~~l 152 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD--D------D----DLLYQL 152 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC--C------c----HHHHhH
Confidence 542110 0 11222333343332 234679999999999621 0 0 223333
Q ss_pred HHHHHHhccccccccCCCcEEEEEecCCCC---CCChhhccCCCcc-ccccCCCCCHHHHHHHHHHHhhh--cccCCCHH
Q 001162 691 VDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFD-FHVQLPAPAASERKAILEHEIQR--RSLECSDE 764 (1134)
Q Consensus 691 ~~~ld~~~~~~~~~~~~~~V~vIattn~~~---~Ld~aL~~~gRF~-~~i~l~~P~~eeR~~IL~~~l~~--~~l~~~~~ 764 (1134)
.++.+.... ...++.+|+++|.++ .+++.+.+ ||. ..++|++|+.+++.+|++..+.. ....++++
T Consensus 153 ~~~~~~~~~------~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~ 224 (365)
T TIGR02928 153 SRARSNGDL------DNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDG 224 (365)
T ss_pred hccccccCC------CCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChh
Confidence 332111000 012588899998875 46777777 664 57899999999999999988763 22336777
Q ss_pred HHHHHhhh---cCCCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhcc
Q 001162 765 ILLDVASK---CDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1134)
Q Consensus 765 ~l~~la~~---teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1134)
.+..++.. +.| +++.+..++++|...+..+ ....++.+++.+|+...
T Consensus 225 ~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~-----------~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 225 VIPLCAALAAQEHG-DARKAIDLLRVAGEIAERE-----------GAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-----------CCCCCCHHHHHHHHHHH
Confidence 66655444 345 5666667888887766543 22458889988877654
No 141
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.48 E-value=1.3e-12 Score=153.11 Aligned_cols=220 Identities=19% Similarity=0.176 Sum_probs=140.6
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcC---------CcEEEEeCccc
Q 001162 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS---------LRFISVKGPEL 914 (1134)
Q Consensus 844 ~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~---------~~~i~i~~~el 914 (1134)
+++.|-++..+.|...+..... + ..+.+++++||||||||++++++++++. ..++.++|...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 4678888888888777653211 1 2335799999999999999999998652 57888898654
Q ss_pred chh----------cc--c-------cc-HHHHHHHHHHhh-hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcc
Q 001162 915 LNK----------YI--G-------AS-EQAVRDIFSKAT-AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELD 973 (1134)
Q Consensus 915 ~~~----------~~--G-------~s-e~~v~~lf~~A~-~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld 973 (1134)
.+. .. | .+ .+.+..+++... ...+.||+|||+|.+... ...++.+++...+
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~--------~~~~L~~l~~~~~ 157 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD--------DDDLLYQLSRARS 157 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC--------CcHHHHhHhcccc
Confidence 321 11 1 11 233445555443 345789999999999622 1235556655422
Q ss_pred ccc-ccccEEEEEecCCCCc---cchhhcCcCccc-ceeecCCCCHHHHHHHHHHHHccCCCC---CcccHHHHHHhc--
Q 001162 974 GVE-VLTGVFVFAATSRPDL---LDAALLRPGRLD-RLLFCDFPSPRERLDILKVISRKLPLA---DDVDLEAIAHMT-- 1043 (1134)
Q Consensus 974 ~~~-~~~~v~vIatTn~p~~---ld~allrpgRfd-~~i~~~~p~~~er~~Il~~~~~~~~~~---~~vd~~~La~~t-- 1043 (1134)
... ...++.+|+++|.++. +++.+.+ ||. ..+.|++|+.+++.+|++..++..... ++..++.++...
T Consensus 158 ~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~ 235 (365)
T TIGR02928 158 NGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQ 235 (365)
T ss_pred ccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHH
Confidence 111 2356888889998864 7888887 775 678999999999999999887631111 121233344333
Q ss_pred -cCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhcC
Q 001162 1044 -EGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKAR 1094 (1134)
Q Consensus 1044 -~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~~ 1094 (1134)
.|.. +.+..+|+.|+..|..+ +...||.+|+..|+....
T Consensus 236 ~~Gd~-R~al~~l~~a~~~a~~~-----------~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 236 EHGDA-RKAIDLLRVAGEIAERE-----------GAERVTEDHVEKAQEKIE 275 (365)
T ss_pred hcCCH-HHHHHHHHHHHHHHHHc-----------CCCCCCHHHHHHHHHHHH
Confidence 3432 33334666666655432 235699999998876653
No 142
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=5.5e-13 Score=160.28 Aligned_cols=174 Identities=20% Similarity=0.288 Sum_probs=127.5
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC-------------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------- 904 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~------------- 904 (1134)
+.+..|++++|++.+++.|...+... +.+..+||+||||||||++|+++|+.+..
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 44678999999999999999887642 22334699999999999999999998742
Q ss_pred ----------cEEEEeCcccchhcccccHHHHHHHHHHhh----hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhh
Q 001162 905 ----------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLT 970 (1134)
Q Consensus 905 ----------~~i~i~~~el~~~~~G~se~~v~~lf~~A~----~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~ 970 (1134)
.++.+++.. ...-..++++.+.+. ...+.|+||||+|.+ .....+.|+.
T Consensus 76 c~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-----------s~~a~naLLk 138 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM-----------SKSAFNALLK 138 (504)
T ss_pred hHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECcccc-----------CHHHHHHHHH
Confidence 244555432 122345666655543 235679999999977 3456888998
Q ss_pred hcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccC
Q 001162 971 ELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEG 1045 (1134)
Q Consensus 971 ~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g 1045 (1134)
.|+. ....+++|.+|+.++.+.+.+.+ |+. .+.|++|+.++....++.++++.++. ++..+..++..+.|
T Consensus 139 ~LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G 209 (504)
T PRK14963 139 TLEE--PPEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG 209 (504)
T ss_pred HHHh--CCCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 8873 34566777778888899999998 654 68999999999999999988876654 23335666666653
No 143
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.2e-12 Score=156.01 Aligned_cols=190 Identities=19% Similarity=0.260 Sum_probs=128.6
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc------------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~------------ 619 (1134)
+|.+++|.+.....+...+. . ...+.++||+|||||||||+|+++|+.+.....
T Consensus 12 ~~~divGq~~i~~~L~~~i~---~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALK---K-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CHHHccCcHHHHHHHHHHHH---c-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 46778888766554443321 1 123456899999999999999999999864211
Q ss_pred ------eeeEEEEEecccccccchhhHHHHHHHHHHHHh----hcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHH
Q 001162 620 ------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKF 689 (1134)
Q Consensus 620 ------~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~----~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~ 689 (1134)
....+..++++. ....+.++ .+.+.+. .....|+||||+|.+.. ...+.
T Consensus 78 ~~i~~g~~~dv~el~aa~--~~gid~iR----~i~~~~~~~p~~~~~kVvIIDE~h~Lt~---------------~a~~~ 136 (472)
T PRK14962 78 RSIDEGTFMDVIELDAAS--NRGIDEIR----KIRDAVGYRPMEGKYKVYIIDEVHMLTK---------------EAFNA 136 (472)
T ss_pred HHHhcCCCCccEEEeCcc--cCCHHHHH----HHHHHHhhChhcCCeEEEEEEChHHhHH---------------HHHHH
Confidence 011344444432 12223333 3333322 12346999999999841 22345
Q ss_pred HHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHH
Q 001162 690 LVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDV 769 (1134)
Q Consensus 690 L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~l 769 (1134)
|+..++.... .+++|++|+.+..+++++.+ |+. .+.|.+++.++...+++..+...++.++++++..+
T Consensus 137 LLk~LE~p~~---------~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~I 204 (472)
T PRK14962 137 LLKTLEEPPS---------HVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFI 204 (472)
T ss_pred HHHHHHhCCC---------cEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5555554332 36777777777889999998 775 89999999999999999999888889999999999
Q ss_pred hhhcCCCChhhHHHHHHHHH
Q 001162 770 ASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 770 a~~teG~s~~DL~~Lv~~a~ 789 (1134)
+..+.| +.+++.+.++.++
T Consensus 205 a~~s~G-dlR~aln~Le~l~ 223 (472)
T PRK14962 205 AKRASG-GLRDALTMLEQVW 223 (472)
T ss_pred HHHhCC-CHHHHHHHHHHHH
Confidence 998876 5666666666544
No 144
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.47 E-value=6.9e-13 Score=152.00 Aligned_cols=176 Identities=23% Similarity=0.339 Sum_probs=132.0
Q ss_pred CCCChhHHHHHHHHHHhcCCCchhHHhhC-CCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccch-hccc-c
Q 001162 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQA-PLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIG-A 921 (1134)
Q Consensus 845 ~i~gl~~~k~~l~~~i~~~~~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~-~~~G-~ 921 (1134)
.|+|++++++.+...+....+...+.... ....+.++||+||||||||++|+++|..++.+|+.++++++.. .|.| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 38999999999988775322111111110 0112578999999999999999999999999999999999885 7999 4
Q ss_pred cHHHHHHHHHHhh-------------------------------------------------------------------
Q 001162 922 SEQAVRDIFSKAT------------------------------------------------------------------- 934 (1134)
Q Consensus 922 se~~v~~lf~~A~------------------------------------------------------------------- 934 (1134)
.+..++++|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4677777777771
Q ss_pred ---h--------------------------------------------------------------------cCCeEEEE
Q 001162 935 ---A--------------------------------------------------------------------AAPCLLFF 943 (1134)
Q Consensus 935 ---~--------------------------------------------------------------------~~P~VLfi 943 (1134)
. ..-.|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 12349999
Q ss_pred cCcccccCCCCCCCCcc-hhhHHHhHhhhccccc--------ccccEEEEEecC----CCCccchhhcCcCcccceeecC
Q 001162 944 DEFDSIAPKRGHDNTGV-TDRVVNQFLTELDGVE--------VLTGVFVFAATS----RPDLLDAALLRPGRLDRLLFCD 1010 (1134)
Q Consensus 944 DEid~l~~~r~~~~~~~-~~rv~~~lL~~ld~~~--------~~~~v~vIatTn----~p~~ld~allrpgRfd~~i~~~ 1010 (1134)
||||+|+.+.+.....+ ...+...||..|+|-. ..++++|||+.. .|+.+-|.|.- ||..++.+.
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~ 333 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVELD 333 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECC
Confidence 99999997754322223 3458899999998832 346799998764 46667788875 999999999
Q ss_pred CCCHHHHHHHHH
Q 001162 1011 FPSPRERLDILK 1022 (1134)
Q Consensus 1011 ~p~~~er~~Il~ 1022 (1134)
+++.++..+||.
T Consensus 334 ~L~~~dL~~ILt 345 (443)
T PRK05201 334 ALTEEDFVRILT 345 (443)
T ss_pred CCCHHHHHHHhc
Confidence 999999999993
No 145
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.47 E-value=6.4e-13 Score=159.51 Aligned_cols=273 Identities=16% Similarity=0.241 Sum_probs=169.3
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccC
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1134)
++++||||+|+|||+|++++++++..... ...++++++..+.......+.......|... ...+.+|+|||+|.+.+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~-~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNP-NAKVVYVTSEKFTNDFVNALRNNTMEEFKEK-YRSVDVLLIDDIQFLAGK 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHHcCcHHHHHHH-HhcCCEEEEehhhhhcCC
Confidence 45999999999999999999999864321 2568889988775443333322111223222 235789999999998531
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCC---CChhhccCCCcc--ccccCCCCCHHH
Q 001162 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAASE 745 (1134)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~---Ld~aL~~~gRF~--~~i~l~~P~~ee 745 (1134)
. .....++..+....+. . ..++|++...+.. +++.|++ ||. ..+.|.+|+.++
T Consensus 227 ~---------~~~~~l~~~~n~l~~~----~-------~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~ 284 (450)
T PRK00149 227 E---------RTQEEFFHTFNALHEA----G-------KQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLET 284 (450)
T ss_pred H---------HHHHHHHHHHHHHHHC----C-------CcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHH
Confidence 1 1112333333333221 1 2355555555544 6788888 885 478999999999
Q ss_pred HHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhcccc
Q 001162 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1134)
Q Consensus 746 R~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P 825 (1134)
|.+|++..+...++.++++++..||....| +.++|..++.+....+... ...++.+.+..++.....
T Consensus 285 r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~------------~~~it~~~~~~~l~~~~~ 351 (450)
T PRK00149 285 RIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLT------------GKPITLELAKEALKDLLA 351 (450)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhh------------CCCCCHHHHHHHHHHhhc
Confidence 999999999888889999999999999887 7888888888876554322 133677777777765421
Q ss_pred ceeccccccccCCCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCc
Q 001162 826 VAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR 905 (1134)
Q Consensus 826 ~~lr~v~~~~~~~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~ 905 (1134)
.. . .-...+.+.+.+.+..... ..++ .|+.-.-+-..||.+|-.+-..
T Consensus 352 ~~-------------~---~~~~~~~i~~~v~~~~~i~--~~~l--------------~~~~R~~~~~~aR~iamyl~~~ 399 (450)
T PRK00149 352 AQ-------------K---KKITIENIQKVVAEYYNIK--VSDL--------------KSKSRTRNIARPRQIAMYLAKE 399 (450)
T ss_pred cC-------------C---CCCCHHHHHHHHHHHcCCC--HHHH--------------hCCCCCcccChHHHHHHHHHHH
Confidence 10 0 1134566666666654422 2222 2333333334677777666555
Q ss_pred EEEEeCcccchhcccccHHHHHHHHHH
Q 001162 906 FISVKGPELLNKYIGASEQAVRDIFSK 932 (1134)
Q Consensus 906 ~i~i~~~el~~~~~G~se~~v~~lf~~ 932 (1134)
+...+.+++-..|-|..-..+-...++
T Consensus 400 ~~~~s~~~Ig~~fg~rdhstV~~a~~~ 426 (450)
T PRK00149 400 LTDLSLPEIGRAFGGRDHTTVLHAVRK 426 (450)
T ss_pred hcCCCHHHHHHHcCCCCHhHHHHHHHH
Confidence 544555554333334444444444433
No 146
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=9.4e-13 Score=158.05 Aligned_cols=196 Identities=18% Similarity=0.237 Sum_probs=139.0
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc-----------
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----------- 619 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~----------- 619 (1134)
.+|.+++|.+...+.+.+.+.. ...+..+||+||+|+|||++|+++|+.+.....
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~--------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALER--------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 3577889988887776665531 223466899999999999999999999864211
Q ss_pred -------eeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHH
Q 001162 620 -------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (1134)
Q Consensus 620 -------~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~ 692 (1134)
....++.++.+.- ...+.++..+...-.........|+||||+|.|.. ...+.|+.
T Consensus 78 C~~I~~g~hpDviEIDAAs~--~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~---------------~A~NALLK 140 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAASR--TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST---------------HSFNALLK 140 (702)
T ss_pred HHHHhcCCCCceEEeccccc--CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH---------------HHHHHHHH
Confidence 0113444444321 12334443333222222223456999999999841 23456666
Q ss_pred HHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhh
Q 001162 693 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 772 (1134)
Q Consensus 693 ~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~ 772 (1134)
.++.... .+.+|++|+.+..+++.+++ |+. ++.|.+++.++..+.++..+.+.++.++++.+..++..
T Consensus 141 tLEEPP~---------~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~ 208 (702)
T PRK14960 141 TLEEPPE---------HVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAES 208 (702)
T ss_pred HHhcCCC---------CcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 6665432 36778888888888888887 764 89999999999999999999988999999999999999
Q ss_pred cCCCChhhHHHHHHHHHH
Q 001162 773 CDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 773 teG~s~~DL~~Lv~~a~~ 790 (1134)
+.| +.+++.++++.++.
T Consensus 209 S~G-dLRdALnLLDQaIa 225 (702)
T PRK14960 209 AQG-SLRDALSLTDQAIA 225 (702)
T ss_pred cCC-CHHHHHHHHHHHHH
Confidence 887 78888888887764
No 147
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.46 E-value=9.3e-13 Score=152.41 Aligned_cols=209 Identities=21% Similarity=0.285 Sum_probs=136.6
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcC-----CcEEEEeCc
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-----LRFISVKGP 912 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~-----~~~i~i~~~ 912 (1134)
+.+..|+++.|.+.+++.+...+... ...+++|+||||||||++|+++|+++. .+++.+++.
T Consensus 9 y~P~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~ 75 (337)
T PRK12402 9 YRPALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA 75 (337)
T ss_pred hCCCcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechh
Confidence 34578999999999999998876531 113799999999999999999999873 457888887
Q ss_pred ccchhc-------------ccc-------cHHHHHHHHHHhhh-----cCCeEEEEcCcccccCCCCCCCCcchhhHHHh
Q 001162 913 ELLNKY-------------IGA-------SEQAVRDIFSKATA-----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQ 967 (1134)
Q Consensus 913 el~~~~-------------~G~-------se~~v~~lf~~A~~-----~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~ 967 (1134)
++.... .+. ....++.+.+.... ..+.+|||||+|.+. ....+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-----------~~~~~~ 144 (337)
T PRK12402 76 DFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-----------EDAQQA 144 (337)
T ss_pred hhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----------HHHHHH
Confidence 764221 111 12234444433322 234699999999873 233455
Q ss_pred HhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCC
Q 001162 968 FLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGF 1046 (1134)
Q Consensus 968 lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~ 1046 (1134)
|...|+... +.+.+|.+|+.+..+.+.+.+ |+ ..+.|++|+.+++..+++.++++.++. ++..++.|+..+
T Consensus 145 L~~~le~~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~--- 216 (337)
T PRK12402 145 LRRIMEQYS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA--- 216 (337)
T ss_pred HHHHHHhcc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---
Confidence 666665332 223344466666677788887 55 468999999999999999988876654 333355555554
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhh
Q 001162 1047 SGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASK 1092 (1134)
Q Consensus 1047 sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~ 1092 (1134)
++|++.++......+ . ....||.+++..++..
T Consensus 217 -~gdlr~l~~~l~~~~----~---------~~~~It~~~v~~~~~~ 248 (337)
T PRK12402 217 -GGDLRKAILTLQTAA----L---------AAGEITMEAAYEALGD 248 (337)
T ss_pred -CCCHHHHHHHHHHHH----H---------cCCCCCHHHHHHHhCC
Confidence 456666555433222 0 0125888888877654
No 148
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=3.2e-12 Score=156.60 Aligned_cols=191 Identities=20% Similarity=0.276 Sum_probs=134.6
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEE---eC---
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISV---KG--- 911 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i---~~--- 911 (1134)
+.+..|++|+|++.+++.|+..+... +.+..+||+||+|||||++|+++|+.+...--.. .|
T Consensus 12 yRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C 79 (725)
T PRK07133 12 YRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC 79 (725)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH
Confidence 34678999999999999999888642 2344689999999999999999999875421000 00
Q ss_pred -------cccc--hhcccccHHHHHHHHHHhhh----cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccccc
Q 001162 912 -------PELL--NKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVL 978 (1134)
Q Consensus 912 -------~el~--~~~~G~se~~v~~lf~~A~~----~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~ 978 (1134)
.+++ +.........+|++.+.+.. +...|++|||+|.|. ....+.||+.|+ ++.
T Consensus 80 ~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT-----------~~A~NALLKtLE--EPP 146 (725)
T PRK07133 80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS-----------KSAFNALLKTLE--EPP 146 (725)
T ss_pred HHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC-----------HHHHHHHHHHhh--cCC
Confidence 0111 00001224557888877653 345799999999983 357889999998 445
Q ss_pred ccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHH
Q 001162 979 TGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSD 1057 (1134)
Q Consensus 979 ~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~ 1057 (1134)
+.+++|.+|+.++.|.+.+++ |+. .+.|.+++.++...+++..+.+.++. .+..+..+|..+.| +.+++..++..
T Consensus 147 ~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLek 222 (725)
T PRK07133 147 KHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIAEQ 222 (725)
T ss_pred CceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 677777788889999999998 664 78999999999999999888776654 22235667776663 44554444443
No 149
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.46 E-value=3.6e-13 Score=172.18 Aligned_cols=185 Identities=25% Similarity=0.339 Sum_probs=138.2
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc----------CCcEEEEe
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~----------~~~~i~i~ 910 (1134)
..++.+.|.++..+.+.+.+.. +...+++|+||||||||++|+.+|..+ +.+++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 4688899999988888887653 234589999999999999999999976 47899999
Q ss_pred Ccccc--hhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecC
Q 001162 911 GPELL--NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATS 988 (1134)
Q Consensus 911 ~~el~--~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn 988 (1134)
++.++ .+|.|+.++.++.+|+.++...++||||||+|.|...++..... .+.+-|...| ..+.+.+||+|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~---~~a~lLkp~l----~rg~l~~IgaTt 315 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAI---DAANILKPAL----ARGELQCIGATT 315 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcc---cHHHHhHHHH----hCCCcEEEEeCC
Confidence 98887 47899999999999999988888999999999998764322211 2223333222 245577888888
Q ss_pred CCC-----ccchhhcCcCcccceeecCCCCHHHHHHHHHHHHcc----CCCC-CcccHHHHHHhccCCcH
Q 001162 989 RPD-----LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRK----LPLA-DDVDLEAIAHMTEGFSG 1048 (1134)
Q Consensus 989 ~p~-----~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~----~~~~-~~vd~~~La~~t~g~sg 1048 (1134)
..+ ..|+++.+ ||.. |.++.|+.++...|++.+... ..+. .+..+..++..+.+|.+
T Consensus 316 ~~ey~~~ie~D~aL~r--Rf~~-I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 316 LDEYRKHIEKDPALER--RFQP-VYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred HHHHHHHHhcCHHHHh--cceE-EecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 654 37899999 9974 688999999999999865432 2221 33336666676766654
No 150
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.3e-12 Score=158.71 Aligned_cols=185 Identities=17% Similarity=0.244 Sum_probs=132.6
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC-------------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------- 904 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~------------- 904 (1134)
+.+..|++|+|++.+++.|...+... +.+..+||+||+|||||++|+++|+.++.
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 34678999999999999999987642 23334799999999999999999998753
Q ss_pred -------------cEEEEeCcccchhcccccHHHHHHHHHHhh----hcCCeEEEEcCcccccCCCCCCCCcchhhHHHh
Q 001162 905 -------------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQ 967 (1134)
Q Consensus 905 -------------~~i~i~~~el~~~~~G~se~~v~~lf~~A~----~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~ 967 (1134)
++++++++.. ..-+.+|++.+.+. .....|++|||+|.| +....|.
T Consensus 75 ~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L-----------t~~A~NA 137 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV-----------TTAGFNA 137 (584)
T ss_pred HHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC-----------CHHHHHH
Confidence 2334433221 12345566555442 234569999999998 3458899
Q ss_pred HhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCC
Q 001162 968 FLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGF 1046 (1134)
Q Consensus 968 lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~ 1046 (1134)
||+.|+ +....+++|.+|+.++.+.+++++ |+ ..+.|..++.++..+.++.++++.++. ++..+..++..+. -
T Consensus 138 LLK~LE--Epp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~-G 211 (584)
T PRK14952 138 LLKIVE--EPPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG-G 211 (584)
T ss_pred HHHHHh--cCCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-C
Confidence 999998 455678888888888999999998 54 578999999999999999988877653 2333455555554 3
Q ss_pred cHHHHHHHHHH
Q 001162 1047 SGADLQALLSD 1057 (1134)
Q Consensus 1047 sg~dl~~l~~~ 1057 (1134)
+.+++.+++..
T Consensus 212 dlR~aln~Ldq 222 (584)
T PRK14952 212 SPRDTLSVLDQ 222 (584)
T ss_pred CHHHHHHHHHH
Confidence 45555555543
No 151
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.46 E-value=1.3e-12 Score=146.13 Aligned_cols=157 Identities=22% Similarity=0.336 Sum_probs=112.8
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhc----CCeEEEEcccch
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDH----APSIVIFDNLDS 666 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~----~PsIL~IDEiD~ 666 (1134)
.+++|||||||||||||+.||+..+ ..|..+++-.. ..+.++.+++.+... ...||||||+|+
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~------~~f~~~sAv~~-------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHR 115 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTN------AAFEALSAVTS-------GVKDLREIIEEARKNRLLGRRTILFLDEIHR 115 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhC------CceEEeccccc-------cHHHHHHHHHHHHHHHhcCCceEEEEehhhh
Confidence 4599999999999999999999987 66777765332 224467777777432 357999999999
Q ss_pred hccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCC--CCCCChhhccCCCccccccCCCCCHH
Q 001162 667 IISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS--LEKIPQSLTSSGRFDFHVQLPAPAAS 744 (1134)
Q Consensus 667 L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~--~~~Ld~aL~~~gRF~~~i~l~~P~~e 744 (1134)
+-. .-...|+..++. +.+++||+|+. .-.++++|+| |.. ++.|.+.+.+
T Consensus 116 fnK---------------~QQD~lLp~vE~-----------G~iilIGATTENPsF~ln~ALlS--R~~-vf~lk~L~~~ 166 (436)
T COG2256 116 FNK---------------AQQDALLPHVEN-----------GTIILIGATTENPSFELNPALLS--RAR-VFELKPLSSE 166 (436)
T ss_pred cCh---------------hhhhhhhhhhcC-----------CeEEEEeccCCCCCeeecHHHhh--hhh-eeeeecCCHH
Confidence 841 113345555553 24788887753 4468999999 653 8899999999
Q ss_pred HHHHHHHHHh--hhcccC-----CCHHHHHHHhhhcCCCChhhHHHHHHHHHH
Q 001162 745 ERKAILEHEI--QRRSLE-----CSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 745 eR~~IL~~~l--~~~~l~-----~~~~~l~~la~~teG~s~~DL~~Lv~~a~~ 790 (1134)
+..+++++-+ ..+++. ++++.+..++..++| ++|-.-++++.+..
T Consensus 167 di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G-D~R~aLN~LE~~~~ 218 (436)
T COG2256 167 DIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG-DARRALNLLELAAL 218 (436)
T ss_pred HHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc-hHHHHHHHHHHHHH
Confidence 9999999833 234444 788899999999988 45444455555443
No 152
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.46 E-value=1.3e-12 Score=152.27 Aligned_cols=183 Identities=25% Similarity=0.324 Sum_probs=130.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC--------------
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL-------------- 904 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~-------------- 904 (1134)
.+..|++++|.+.+++.+...+... +.+..+|||||||+|||++|+++|+.+..
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 4578999999999999999877531 23446899999999999999999988642
Q ss_pred ----------cEEEEeCcccchhcccccHHHHHHHHHHhhh----cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhh
Q 001162 905 ----------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLT 970 (1134)
Q Consensus 905 ----------~~i~i~~~el~~~~~G~se~~v~~lf~~A~~----~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~ 970 (1134)
+++.+++.+ +.....++++++.+.. +...|++|||+|.+. ....+.+++
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~-----------~~~~~~Ll~ 139 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS-----------KSAFNALLK 139 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC-----------HHHHHHHHH
Confidence 244444431 1234457778877643 234699999999882 356788888
Q ss_pred hcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHH
Q 001162 971 ELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGA 1049 (1134)
Q Consensus 971 ~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~ 1049 (1134)
.|+. ....+++|.+|+.++.+.+++++ |+ ..+.|++|+.++...+++.++++.++. ++..+..++..+.| +.+
T Consensus 140 ~le~--~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~ 213 (355)
T TIGR02397 140 TLEE--PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLR 213 (355)
T ss_pred HHhC--CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChH
Confidence 8864 33567777778888888899988 66 467999999999999999988876653 22335556666553 344
Q ss_pred HHHHHHH
Q 001162 1050 DLQALLS 1056 (1134)
Q Consensus 1050 dl~~l~~ 1056 (1134)
.+.+.+.
T Consensus 214 ~a~~~le 220 (355)
T TIGR02397 214 DALSLLD 220 (355)
T ss_pred HHHHHHH
Confidence 4444333
No 153
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.6e-12 Score=156.65 Aligned_cols=195 Identities=18% Similarity=0.222 Sum_probs=138.9
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCce-----------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~----------- 620 (1134)
+|.+++|.+..++.+.+.+.. ...+..+||+||+|+|||++|+.+|+.+......
T Consensus 14 ~f~divGq~~v~~~L~~~~~~--------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQ--------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHh--------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 577889999888877765532 1223558999999999999999999998743211
Q ss_pred -------eeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001162 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1134)
Q Consensus 621 -------~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1134)
...+++++.+. ....+.++..+..+-.........|+||||+|.|.+ ...+.|+..
T Consensus 80 ~~i~~g~~~d~~eidaas--~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~---------------~a~naLLk~ 142 (509)
T PRK14958 80 REIDEGRFPDLFEVDAAS--RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG---------------HSFNALLKT 142 (509)
T ss_pred HHHhcCCCceEEEEcccc--cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH---------------HHHHHHHHH
Confidence 12255555432 223344444333222111122346999999999852 234566666
Q ss_pred HHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhc
Q 001162 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1134)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~t 773 (1134)
+++... .+.+|.+|+.+..+.+.+++ |+. .++|.+++.++....++..+...++.++++.+..++..+
T Consensus 143 LEepp~---------~~~fIlattd~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s 210 (509)
T PRK14958 143 LEEPPS---------HVKFILATTDHHKLPVTVLS--RCL-QFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAA 210 (509)
T ss_pred HhccCC---------CeEEEEEECChHhchHHHHH--Hhh-hhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 766432 36777777888889888888 764 889999999999999999998888999999999999988
Q ss_pred CCCChhhHHHHHHHHHH
Q 001162 774 DGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 774 eG~s~~DL~~Lv~~a~~ 790 (1134)
.| +.+++.++++.++.
T Consensus 211 ~G-slR~al~lLdq~ia 226 (509)
T PRK14958 211 NG-SVRDALSLLDQSIA 226 (509)
T ss_pred CC-cHHHHHHHHHHHHh
Confidence 77 78899999988753
No 154
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.45 E-value=4.8e-13 Score=171.53 Aligned_cols=184 Identities=24% Similarity=0.372 Sum_probs=134.9
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc----------CCcEEEEe
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~----------~~~~i~i~ 910 (1134)
..++.+.|.+...+.+.+.+.. +...+++|+||||||||++|+++|..+ +.+++.++
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 4678899998877766665543 223578999999999999999999875 67889998
Q ss_pred Ccccc--hhcccccHHHHHHHHHHhhh-cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEec
Q 001162 911 GPELL--NKYIGASEQAVRDIFSKATA-AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT 987 (1134)
Q Consensus 911 ~~el~--~~~~G~se~~v~~lf~~A~~-~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatT 987 (1134)
...++ .+|.|+.+..++.+|+.+.. ..|+||||||+|.|.+.+..+.. ..+.+.|...+ ....+.+||+|
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~---~d~~~~Lk~~l----~~g~i~~IgaT 309 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA---MDAGNMLKPAL----ARGELHCIGAT 309 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch---hHHHHHhchhh----hcCceEEEEeC
Confidence 88876 47889999999999998865 46899999999999864332211 12333333222 34568888888
Q ss_pred CCCCc-----cchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-----CcccHHHHHHhccCCc
Q 001162 988 SRPDL-----LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-----DDVDLEAIAHMTEGFS 1047 (1134)
Q Consensus 988 n~p~~-----ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-----~~vd~~~La~~t~g~s 1047 (1134)
+..+. +|+++.| ||. .|.++.|+.+++..|++.+..++... .+..+...+..+.+|-
T Consensus 310 t~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 310 TLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred cHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 87643 7999999 996 47899999999999999876665432 2223444555555444
No 155
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.45 E-value=3.6e-12 Score=150.85 Aligned_cols=226 Identities=21% Similarity=0.243 Sum_probs=147.4
Q ss_pred cccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccc
Q 001162 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (1134)
Q Consensus 554 ~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~ 633 (1134)
..+.|.+..++++...+...+. ...+.+++|+||||||||++++.+++.+.... ....+++++|....
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~-----------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-~~~~~v~in~~~~~ 97 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR-----------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-VKVVYVYINCQIDR 97 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC-----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEECCcCC
Confidence 3577899999998888765442 12245699999999999999999999885432 12668889986543
Q ss_pred ccc------------------hhhHHHHHHHHHHHHhh-cCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHH
Q 001162 634 LEK------------------GPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM 694 (1134)
Q Consensus 634 ~~~------------------~~~~~~~l~~~f~~a~~-~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~l 694 (1134)
... .......+..+.+.... ..+.||+|||+|.+... .+ ...+..|.+.+
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~----~~-------~~~l~~l~~~~ 166 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEK----EG-------NDVLYSLLRAH 166 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhcc----CC-------chHHHHHHHhh
Confidence 210 00122233333333322 34679999999999611 11 02344444444
Q ss_pred HHhccccccccCCCcEEEEEecCCCC---CCChhhccCCCc-cccccCCCCCHHHHHHHHHHHhhhc--ccCCCHHHHHH
Q 001162 695 DEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRF-DFHVQLPAPAASERKAILEHEIQRR--SLECSDEILLD 768 (1134)
Q Consensus 695 d~~~~~~~~~~~~~~V~vIattn~~~---~Ld~aL~~~gRF-~~~i~l~~P~~eeR~~IL~~~l~~~--~l~~~~~~l~~ 768 (1134)
+.... .++.+|+++|..+ .+++.+.+ || ...+.|++++.++..+|++..+... ...++++.+..
T Consensus 167 ~~~~~--------~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~ 236 (394)
T PRK00411 167 EEYPG--------ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDL 236 (394)
T ss_pred hccCC--------CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHH
Confidence 43321 1478888888753 46677776 55 3578999999999999999887642 22478888888
Q ss_pred HhhhcCCC--ChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhcc
Q 001162 769 VASKCDGY--DAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1134)
Q Consensus 769 la~~teG~--s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1134)
++..+.+. ..+.+..++.+|...+..+ ....++.+|+..|+...
T Consensus 237 i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~-----------~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 237 IADLTAREHGDARVAIDLLRRAGLIAERE-----------GSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHc-----------CCCCcCHHHHHHHHHHH
Confidence 88877442 3455557777777666543 22468899998888665
No 156
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.45 E-value=1.5e-12 Score=151.66 Aligned_cols=237 Identities=19% Similarity=0.244 Sum_probs=153.8
Q ss_pred CCCChhHHHHHHHHHHhcCCCchhHHhhCC----C-CCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccc-hhc
Q 001162 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAP----L-RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-NKY 918 (1134)
Q Consensus 845 ~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~----~-~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~-~~~ 918 (1134)
.++|++++++.+...+....+......... . ....++||+||||||||++|+++|..++.+|..+++..+. ..|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 379999999999877643222110000000 0 1246899999999999999999999999999999998875 368
Q ss_pred cccc-HHHHHHHHHHh----hhcCCeEEEEcCcccccCCCCCCC---CcchhhHHHhHhhhccccc-----------ccc
Q 001162 919 IGAS-EQAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVE-----------VLT 979 (1134)
Q Consensus 919 ~G~s-e~~v~~lf~~A----~~~~P~VLfiDEid~l~~~r~~~~---~~~~~rv~~~lL~~ld~~~-----------~~~ 979 (1134)
.|.. +..+..+++.+ ....++||||||+|.+.+++.+.+ ......+.+.||+.|+|.. +..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 8875 44455555433 235678999999999987643221 1112368889999997642 123
Q ss_pred cEEEEEecCCC---------------------------C-----------------------ccchhhcCcCcccceeec
Q 001162 980 GVFVFAATSRP---------------------------D-----------------------LLDAALLRPGRLDRLLFC 1009 (1134)
Q Consensus 980 ~v~vIatTn~p---------------------------~-----------------------~ld~allrpgRfd~~i~~ 1009 (1134)
+.++|.|+|-. + -+.|+|+. |+|.++.|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeec
Confidence 46677776640 0 02355554 99999999
Q ss_pred CCCCHHHHHHHHHH----HHcc-------CCCCCccc---HHHHHHh--ccCCcHHHHHHHHHHHHHHHHHHHHhccCCC
Q 001162 1010 DFPSPRERLDILKV----ISRK-------LPLADDVD---LEAIAHM--TEGFSGADLQALLSDAQLSAVHEILNNIDSN 1073 (1134)
Q Consensus 1010 ~~p~~~er~~Il~~----~~~~-------~~~~~~vd---~~~La~~--t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~ 1073 (1134)
.+.+.+++.+|+.. ++++ .++.-.++ ++.|++. ...+.++.|+.+++...+.++-+..+.
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~p~~---- 391 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDLPSL---- 391 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhCCCC----
Confidence 99999999999875 2221 13322233 4556654 345667888888887777666554321
Q ss_pred CCCCcccccHHHHH
Q 001162 1074 EPGKMPVITDALLK 1087 (1134)
Q Consensus 1074 ~~~~~~~it~e~l~ 1087 (1134)
.......||.+.+.
T Consensus 392 ~~~~~v~i~~~~v~ 405 (413)
T TIGR00382 392 EDLEKVVITKETVL 405 (413)
T ss_pred CCCcEEEECHHHHc
Confidence 11233467776664
No 157
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.2e-12 Score=157.55 Aligned_cols=184 Identities=22% Similarity=0.268 Sum_probs=130.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC--------------
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL-------------- 904 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~-------------- 904 (1134)
.+..|++++|++.+++.|...+... +.+..+||+||+|||||++|+++|+.+..
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 4578999999999999998887632 23345899999999999999999997753
Q ss_pred ----------cEEEEeCcccchhcccccHHHHHHHHHHhh----hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhh
Q 001162 905 ----------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLT 970 (1134)
Q Consensus 905 ----------~~i~i~~~el~~~~~G~se~~v~~lf~~A~----~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~ 970 (1134)
.++.+++..- .| -..++++++.+. .+...|+||||+|.+ .....+.||+
T Consensus 79 C~~i~~~~~~dlieidaas~----~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-----------s~~a~naLLK 141 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAASR----TG--VEETKEILDNIQYMPSQGRYKVYLIDEVHML-----------SKQSFNALLK 141 (546)
T ss_pred HHHHhcCCCCceEEeecccc----cC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhc-----------cHHHHHHHHH
Confidence 3344433211 11 234566665553 234579999999998 4567889999
Q ss_pred hcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHH
Q 001162 971 ELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGA 1049 (1134)
Q Consensus 971 ~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~ 1049 (1134)
.|+ +..+.+++|++|+.+..+.+.+++ |+ ..+.|.+++.++....++.++++.++. ++..+..++..+. -+.+
T Consensus 142 ~LE--epp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~-GdlR 215 (546)
T PRK14957 142 TLE--EPPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAK-GSLR 215 (546)
T ss_pred HHh--cCCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHH
Confidence 997 344566666666778888888888 66 678999999999999999888776654 3334566666664 3455
Q ss_pred HHHHHHHH
Q 001162 1050 DLQALLSD 1057 (1134)
Q Consensus 1050 dl~~l~~~ 1057 (1134)
++.+++..
T Consensus 216 ~alnlLek 223 (546)
T PRK14957 216 DALSLLDQ 223 (546)
T ss_pred HHHHHHHH
Confidence 55554443
No 158
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.45 E-value=1.1e-12 Score=159.48 Aligned_cols=229 Identities=16% Similarity=0.207 Sum_probs=145.9
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc----eeeEEEE
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVF 626 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~----~~~~~~~ 626 (1134)
..|+++.|.+..+..+...+ . .+.+.++||+||||||||++||++++.+..... ...+++.
T Consensus 62 ~~f~~iiGqs~~i~~l~~al---~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAAL---C------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHH---h------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 45778888888877765432 1 223568999999999999999999987543211 1257888
Q ss_pred EecccccccchhhHHHHHH----------HHHH----------HHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHH
Q 001162 627 VCCSRLSLEKGPIIRQALS----------NFIS----------EALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIAL 686 (1134)
Q Consensus 627 v~~s~l~~~~~~~~~~~l~----------~~f~----------~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l 686 (1134)
++|........+-....+. ..|. .......++|||||+|.|.+ ...+.+
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~-----------~~q~~L 195 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP-----------VQMNKL 195 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH-----------HHHHHH
Confidence 9986421110000000000 0000 01112347999999999842 222334
Q ss_pred HHHHHHHHHH-----hcccccc----------ccCCCcEE-EEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHH
Q 001162 687 TKFLVDIMDE-----YGEKRKS----------SCGIGPIA-FVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAIL 750 (1134)
Q Consensus 687 ~~~L~~~ld~-----~~~~~~~----------~~~~~~V~-vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL 750 (1134)
+..+.+.... +...+.. ......+. +++|++.++.+++++++ |+. .+.|++++.+++.+|+
T Consensus 196 L~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il 272 (531)
T TIGR02902 196 LKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIA 272 (531)
T ss_pred HHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHH
Confidence 4333221000 0000000 00011344 45566779999999999 875 7889999999999999
Q ss_pred HHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhh
Q 001162 751 EHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMH 821 (1134)
Q Consensus 751 ~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~ 821 (1134)
+..+++.++.++++.+..++..+. +++++.++++.|+..+..+ ....++.+|+..++.
T Consensus 273 ~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~-----------~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 273 KNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGE-----------GRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhC-----------CCcEEcHHHHHHHhC
Confidence 999998888899999998887665 7899999999998766543 224688899988775
No 159
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.1e-12 Score=159.32 Aligned_cols=194 Identities=21% Similarity=0.257 Sum_probs=137.0
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCce-----------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~----------- 620 (1134)
+|.+++|.+..+..+.+.+.. ...+..+||+||+|||||++||++|+.+......
T Consensus 14 tFddIIGQe~Iv~~LknaI~~--------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQ--------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHh--------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 477888888888776654422 1223447999999999999999999998743110
Q ss_pred -------eeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001162 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1134)
Q Consensus 621 -------~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1134)
...++.++... ......++..+..+..........|+||||+|.|. ....+.|+..
T Consensus 80 ~~i~~g~~~DviEidAas--~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT---------------~eAqNALLKt 142 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAAS--RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS---------------RSSFNALLKT 142 (944)
T ss_pred HHHhcCCCceEEEecccc--ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC---------------HHHHHHHHHH
Confidence 01122233221 12233444433333222222344699999999984 1456677777
Q ss_pred HHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhc
Q 001162 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1134)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~t 773 (1134)
+++... .+.+|++|+.+..|.+.+++ |+ .++.|.+++.++..+.|+..+...++.++++.+..|+..+
T Consensus 143 LEEPP~---------~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S 210 (944)
T PRK14949 143 LEEPPE---------HVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAA 210 (944)
T ss_pred HhccCC---------CeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 776543 47777788888889999888 76 4899999999999999999888778889999999999998
Q ss_pred CCCChhhHHHHHHHHH
Q 001162 774 DGYDAYDLEILVDRTV 789 (1134)
Q Consensus 774 eG~s~~DL~~Lv~~a~ 789 (1134)
.| ++|++..+++.++
T Consensus 211 ~G-d~R~ALnLLdQal 225 (944)
T PRK14949 211 NG-SMRDALSLTDQAI 225 (944)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 88 7888888888766
No 160
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.45 E-value=1.2e-12 Score=155.80 Aligned_cols=275 Identities=14% Similarity=0.194 Sum_probs=168.8
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccC
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1134)
.+++||||+|+|||+|++++++++..... ...+.|++++++.......+...-...|....+..+.+|+|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~-~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEP-DLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc
Confidence 45999999999999999999998754321 25688888887654433332211112233333346889999999988631
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCC---CChhhccCCCcc--ccccCCCCCHHH
Q 001162 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAASE 745 (1134)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~---Ld~aL~~~gRF~--~~i~l~~P~~ee 745 (1134)
......+...+..+.+. . ..+++++...+.. +.+.+.+ ||. ..+.|.+|+.+.
T Consensus 210 ---------~~~q~elf~~~n~l~~~----~-------k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~ 267 (440)
T PRK14088 210 ---------TGVQTELFHTFNELHDS----G-------KQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEET 267 (440)
T ss_pred ---------HHHHHHHHHHHHHHHHc----C-------CeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHH
Confidence 11112344433333221 1 2455555556554 4567887 664 567899999999
Q ss_pred HHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhcccc
Q 001162 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1134)
Q Consensus 746 R~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P 825 (1134)
|.+|++..+...++.++++++..||....| +.++|+.++.+....+... ...++.+...+++.++..
T Consensus 268 r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~------------~~~it~~~a~~~L~~~~~ 334 (440)
T PRK14088 268 RKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT------------GEEVDLKEAILLLKDFIK 334 (440)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHh------------CCCCCHHHHHHHHHHHhc
Confidence 999999999888899999999999998887 7888988888776544322 134666666666655421
Q ss_pred ceeccccccccCCCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCc
Q 001162 826 VAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR 905 (1134)
Q Consensus 826 ~~lr~v~~~~~~~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~ 905 (1134)
.. .-......+.+.+.+.+.... ...+ |.|+.-+.+-..||.+|-.+-..
T Consensus 335 ~~--------------~~~~~i~~~~I~~~V~~~~~i--~~~~--------------l~s~~R~~~i~~aR~iamyl~r~ 384 (440)
T PRK14088 335 PN--------------RVKAMDPIDELIEIVAKVTGV--SREE--------------ILSNSRNVKALLARRIGMYVAKN 384 (440)
T ss_pred cc--------------cccCCCCHHHHHHHHHHHcCC--cHHH--------------HhCCCCCccccHHHHHHHHHHHH
Confidence 10 000123466667777665432 1111 24555566677888888766444
Q ss_pred EEEEeCcccchhcccccHHHHHHHHHH
Q 001162 906 FISVKGPELLNKYIGASEQAVRDIFSK 932 (1134)
Q Consensus 906 ~i~i~~~el~~~~~G~se~~v~~lf~~ 932 (1134)
....+.+++-.. .|.+-..|-...++
T Consensus 385 ~~~~s~~~Ig~~-fgr~hstV~~a~~~ 410 (440)
T PRK14088 385 YLGSSLRTIAEK-FNRSHPVVVDSVKK 410 (440)
T ss_pred HhCCCHHHHHHH-hCCCHHHHHHHHHH
Confidence 433444443322 34444444444333
No 161
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.44 E-value=2.4e-12 Score=152.31 Aligned_cols=222 Identities=19% Similarity=0.207 Sum_probs=141.9
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc-----CCcEEEEeCcccch--
Q 001162 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLN-- 916 (1134)
Q Consensus 844 ~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~-----~~~~i~i~~~el~~-- 916 (1134)
+.+.|-++-.+.|...+..... + ..+.+++++||||||||++++.+++++ +..++.+++....+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~--------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR--------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC--------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 4567777777777666642211 1 223469999999999999999999876 57889999865422
Q ss_pred --------hccc-------cc-HHHHHHHHHHhh-hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccc
Q 001162 917 --------KYIG-------AS-EQAVRDIFSKAT-AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLT 979 (1134)
Q Consensus 917 --------~~~G-------~s-e~~v~~lf~~A~-~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~ 979 (1134)
...+ .+ ...+..+.+... ...+.||+|||+|.+.... ...++..++..++... ..
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-------~~~~l~~l~~~~~~~~-~~ 172 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-------GNDVLYSLLRAHEEYP-GA 172 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-------CchHHHHHHHhhhccC-CC
Confidence 1112 12 223333333333 3456899999999996211 2245666666665433 23
Q ss_pred cEEEEEecCCCC---ccchhhcCcCccc-ceeecCCCCHHHHHHHHHHHHccCC---CCCcccHHHHHHhccCCcH--HH
Q 001162 980 GVFVFAATSRPD---LLDAALLRPGRLD-RLLFCDFPSPRERLDILKVISRKLP---LADDVDLEAIAHMTEGFSG--AD 1050 (1134)
Q Consensus 980 ~v~vIatTn~p~---~ld~allrpgRfd-~~i~~~~p~~~er~~Il~~~~~~~~---~~~~vd~~~La~~t~g~sg--~d 1050 (1134)
++.+|+++|.++ .+++.+.+ ||. ..+.|++|+.++..+|++..++... ...+..++.+++.+.+.+| +.
T Consensus 173 ~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~ 250 (394)
T PRK00411 173 RIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARV 250 (394)
T ss_pred eEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHH
Confidence 677888888764 37777776 663 5789999999999999998875421 1123335666776644322 23
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhcCC
Q 001162 1051 LQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARP 1095 (1134)
Q Consensus 1051 l~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~~p 1095 (1134)
+..+|+.|+..|..+ +...|+.+|+..|+....+
T Consensus 251 a~~ll~~a~~~a~~~-----------~~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 251 AIDLLRRAGLIAERE-----------GSRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred HHHHHHHHHHHHHHc-----------CCCCcCHHHHHHHHHHHHH
Confidence 335566665555432 3357999999999886533
No 162
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2.1e-12 Score=153.27 Aligned_cols=195 Identities=17% Similarity=0.233 Sum_probs=139.4
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc------------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~------------ 619 (1134)
+|.+++|.+...+.+.+.+.. ...+.++||+||+|+||||+|+.+|+.+.....
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~--------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTL--------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 577888888776655543321 233567999999999999999999998753211
Q ss_pred ------eeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001162 620 ------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1134)
Q Consensus 620 ------~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1134)
....++++++++- ...+.++..+..+-.........|+||||+|.|.. ..++.|+..
T Consensus 77 ~~i~~~~~~Dv~eidaas~--~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~---------------~A~NaLLK~ 139 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASN--TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN---------------SAFNALLKT 139 (491)
T ss_pred HHHhccCCCCEEEEecccC--CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH---------------HHHHHHHHH
Confidence 1234566666532 23344444333222222223456999999998841 234566666
Q ss_pred HHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhc
Q 001162 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1134)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~t 773 (1134)
+++... .+.+|.+|+..+.+.+.+++ |+. .+.|.+++.++..+.+...+...++.++++.+..++..+
T Consensus 140 LEePp~---------~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s 207 (491)
T PRK14964 140 LEEPAP---------HVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENS 207 (491)
T ss_pred HhCCCC---------CeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 666432 37777788888889999998 764 789999999999999999999889999999999999999
Q ss_pred CCCChhhHHHHHHHHHH
Q 001162 774 DGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 774 eG~s~~DL~~Lv~~a~~ 790 (1134)
+| +.+++..+++.++.
T Consensus 208 ~G-slR~alslLdqli~ 223 (491)
T PRK14964 208 SG-SMRNALFLLEQAAI 223 (491)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 77 78888888888764
No 163
>PRK06893 DNA replication initiation factor; Validated
Probab=99.44 E-value=2.5e-12 Score=140.48 Aligned_cols=165 Identities=20% Similarity=0.255 Sum_probs=112.9
Q ss_pred eEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCC
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSS 671 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~ 671 (1134)
.++||||||||||+|++++|+++.... ..+.++++...... ..+.+... ....+|+|||++.+.+..
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~---~~~~y~~~~~~~~~--------~~~~~~~~--~~~dlLilDDi~~~~~~~ 107 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQ---RTAIYIPLSKSQYF--------SPAVLENL--EQQDLVCLDDLQAVIGNE 107 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC---CCeEEeeHHHhhhh--------hHHHHhhc--ccCCEEEEeChhhhcCCh
Confidence 489999999999999999999875432 23455555422111 11222222 345799999999885311
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCC---hhhccCCCccccccCCCCCHHHHHH
Q 001162 672 SDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIP---QSLTSSGRFDFHVQLPAPAASERKA 748 (1134)
Q Consensus 672 ~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld---~aL~~~gRF~~~i~l~~P~~eeR~~ 748 (1134)
.....+. .+++.....+. .++++++...+..++ +.|+++.++...+.+++|+.++|.+
T Consensus 108 ---------~~~~~l~----~l~n~~~~~~~------~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 108 ---------EWELAIF----DLFNRIKEQGK------TLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKII 168 (229)
T ss_pred ---------HHHHHHH----HHHHHHHHcCC------cEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHH
Confidence 1111333 33333322111 245566666666654 8888855556788999999999999
Q ss_pred HHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 749 ILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 749 IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
|++..+..+++.++++++.+|+...+| +.+.+..++++..
T Consensus 169 iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~ 208 (229)
T PRK06893 169 VLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLD 208 (229)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 999999888999999999999999887 6778888877764
No 164
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=4.6e-12 Score=153.70 Aligned_cols=185 Identities=22% Similarity=0.294 Sum_probs=133.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCc-------------
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------------- 905 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~------------- 905 (1134)
.+..|++++|++.+++.|...+... +.+..+||+||+|||||++|+++|+.++..
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 4578999999999999998887642 233457999999999999999999988542
Q ss_pred -----------EEEEeCcccchhcccccHHHHHHHHHHhhh----cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhh
Q 001162 906 -----------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLT 970 (1134)
Q Consensus 906 -----------~i~i~~~el~~~~~G~se~~v~~lf~~A~~----~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~ 970 (1134)
++.++++. ...-..+|++.+.+.. +...|+||||+|.+ .....|.||+
T Consensus 79 C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l-----------s~~a~naLLK 141 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML-----------SKSAFNAMLK 141 (527)
T ss_pred HHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC-----------CHHHHHHHHH
Confidence 33333221 1234567888776642 33569999999988 3467889999
Q ss_pred hcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHH
Q 001162 971 ELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGA 1049 (1134)
Q Consensus 971 ~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~ 1049 (1134)
.|+. ..+.+++|.+|+.++.+.+.+++ |+ ..+.|+.++.++....++.++++.++. ++..+..+++.+.| +.+
T Consensus 142 ~LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr 215 (527)
T PRK14969 142 TLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMR 215 (527)
T ss_pred HHhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 9974 44567677777778888778888 65 678999999999999998888766654 23335667777653 456
Q ss_pred HHHHHHHHH
Q 001162 1050 DLQALLSDA 1058 (1134)
Q Consensus 1050 dl~~l~~~A 1058 (1134)
++.+++..+
T Consensus 216 ~al~lldqa 224 (527)
T PRK14969 216 DALSLLDQA 224 (527)
T ss_pred HHHHHHHHH
Confidence 665655544
No 165
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.2e-12 Score=153.78 Aligned_cols=207 Identities=21% Similarity=0.356 Sum_probs=138.3
Q ss_pred cccccchhhHHHHHHHHHH-hcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc-
Q 001162 554 SSLSWMGTTASDVINRIKV-LLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR- 631 (1134)
Q Consensus 554 ~~l~G~~~~~~~i~~~l~~-ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~- 631 (1134)
.+-+|+++.++.|++++.+ -++. --...-++|+||||+|||+++|.||+.|+ ..|..++...
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrg----------s~qGkIlCf~GPPGVGKTSI~kSIA~ALn------RkFfRfSvGG~ 474 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRG----------SVQGKILCFVGPPGVGKTSIAKSIARALN------RKFFRFSVGGM 474 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcc----------cCCCcEEEEeCCCCCCcccHHHHHHHHhC------CceEEEecccc
Confidence 3567899999999999855 2221 11223489999999999999999999998 5555555433
Q ss_pred -----cc---ccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHH-----HHHHHhc
Q 001162 632 -----LS---LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLV-----DIMDEYG 698 (1134)
Q Consensus 632 -----l~---~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~-----~~ld~~~ 698 (1134)
+. -.|.+.+...+-+.+..+....| +++|||+|++.+ ...|+ ....+++.|. +++|+|.
T Consensus 475 tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~---g~qGD----PasALLElLDPEQNanFlDHYL 546 (906)
T KOG2004|consen 475 TDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS---GHQGD----PASALLELLDPEQNANFLDHYL 546 (906)
T ss_pred ccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC---CCCCC----hHHHHHHhcChhhccchhhhcc
Confidence 33 34667777777778888776666 889999999962 11221 1124444442 2334443
Q ss_pred cccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhc----------ccCCCHHHHHH
Q 001162 699 EKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRR----------SLECSDEILLD 768 (1134)
Q Consensus 699 ~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~----------~l~~~~~~l~~ 768 (1134)
.- ......|+||||+|..+.|++.|+. |+. .|+++-|..++..+|.+.++-.. .+.++++++..
T Consensus 547 dV---p~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~ 620 (906)
T KOG2004|consen 547 DV---PVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLA 620 (906)
T ss_pred cc---ccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHH
Confidence 21 1122369999999999999999999 987 99999999999999999876432 23466666554
Q ss_pred Hhh-hcCCCChhhHHHHHHHHHH
Q 001162 769 VAS-KCDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 769 la~-~teG~s~~DL~~Lv~~a~~ 790 (1134)
+.. +|..---|.|+.-+.+.++
T Consensus 621 lI~~YcrEaGVRnLqk~iekI~R 643 (906)
T KOG2004|consen 621 LIERYCREAGVRNLQKQIEKICR 643 (906)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 443 3432223444443333333
No 166
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=1.8e-12 Score=163.03 Aligned_cols=184 Identities=18% Similarity=0.232 Sum_probs=131.0
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC-------------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------- 904 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~------------- 904 (1134)
+.+..|++|+|++.+++.|...+... +.+..+||+||+|||||++|++||+.+.+
T Consensus 9 yRP~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~ 76 (824)
T PRK07764 9 YRPATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD 76 (824)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH
Confidence 34578999999999999999887631 22335899999999999999999998853
Q ss_pred -------------cEEEEeCcccchhcccccHHHHHHHHHHh----hhcCCeEEEEcCcccccCCCCCCCCcchhhHHHh
Q 001162 905 -------------RFISVKGPELLNKYIGASEQAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQ 967 (1134)
Q Consensus 905 -------------~~i~i~~~el~~~~~G~se~~v~~lf~~A----~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~ 967 (1134)
.|+++++... ..-+.+|++.+.+ ......|+||||+|.| +....|.
T Consensus 77 sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-----------t~~a~Na 139 (824)
T PRK07764 77 SCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMV-----------TPQGFNA 139 (824)
T ss_pred HHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhc-----------CHHHHHH
Confidence 2333433221 1234455554443 2345679999999999 4567889
Q ss_pred HhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCC
Q 001162 968 FLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGF 1046 (1134)
Q Consensus 968 lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~ 1046 (1134)
||+.|+ +....++||++|+.++.|-+.+++ |+ ..+.|..++.++...+|+.++++.++. ++..+..|++.+.|
T Consensus 140 LLK~LE--EpP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG- 213 (824)
T PRK07764 140 LLKIVE--EPPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG- 213 (824)
T ss_pred HHHHHh--CCCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 999997 344667777788888888889998 55 577999999999999999988776654 22334556666554
Q ss_pred cHHHHHHHHH
Q 001162 1047 SGADLQALLS 1056 (1134)
Q Consensus 1047 sg~dl~~l~~ 1056 (1134)
+.+++.+++.
T Consensus 214 dlR~Al~eLE 223 (824)
T PRK07764 214 SVRDSLSVLD 223 (824)
T ss_pred CHHHHHHHHH
Confidence 4444444443
No 167
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.43 E-value=2e-12 Score=160.78 Aligned_cols=150 Identities=23% Similarity=0.331 Sum_probs=106.2
Q ss_pred CCCCCCCCCChhHHHH---HHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccc
Q 001162 839 GRSGWDDVGGLTDIQN---AIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 915 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~---~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~ 915 (1134)
.+..+++++|++.+.. .++..+.. ....+++||||||||||++|+++|+.++.+|+.+++...
T Consensus 23 RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~- 88 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA- 88 (725)
T ss_pred CCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-
Confidence 3467889999998874 45555442 122479999999999999999999999999998887531
Q ss_pred hhcccccHHHHHHHHHHhh-----hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecC-C
Q 001162 916 NKYIGASEQAVRDIFSKAT-----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATS-R 989 (1134)
Q Consensus 916 ~~~~G~se~~v~~lf~~A~-----~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn-~ 989 (1134)
| ...++..+..+. .....+|||||+|.+. ....+.|+..++. ..+++|++|+ .
T Consensus 89 ----~--i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln-----------~~qQdaLL~~lE~----g~IiLI~aTTen 147 (725)
T PRK13341 89 ----G--VKDLRAEVDRAKERLERHGKRTILFIDEVHRFN-----------KAQQDALLPWVEN----GTITLIGATTEN 147 (725)
T ss_pred ----h--hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC-----------HHHHHHHHHHhcC----ceEEEEEecCCC
Confidence 1 123444554442 1345699999999983 2234556665542 3455665553 4
Q ss_pred C-CccchhhcCcCcccceeecCCCCHHHHHHHHHHHHc
Q 001162 990 P-DLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISR 1026 (1134)
Q Consensus 990 p-~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~ 1026 (1134)
| ..+++++++ |+ ..+.|++++.+++..|++..+.
T Consensus 148 p~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 148 PYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred hHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHH
Confidence 4 348999998 54 4689999999999999998876
No 168
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=3.4e-12 Score=154.75 Aligned_cols=192 Identities=17% Similarity=0.215 Sum_probs=138.0
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCce-----------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~----------- 620 (1134)
+|.+++|.+..+..+.+.+.. ...+..+||+||+|+|||++|+.+|+.+......
T Consensus 14 tFddIIGQe~vv~~L~~ai~~--------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDE--------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 477889998888877765532 1234669999999999999999999998643210
Q ss_pred -------eeEEEEEecccccccchhhHHHHHHHHHHHHh----hcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHH
Q 001162 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKF 689 (1134)
Q Consensus 621 -------~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~----~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~ 689 (1134)
...++.++... ....+. ++++++.+. .....|+||||+|.|.. ...+.
T Consensus 80 r~i~~g~~~DvlEidaAs--~~gVd~----IRelle~a~~~P~~gk~KVIIIDEad~Ls~---------------~A~NA 138 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAAS--NTGIDN----IREVLENAQYAPTAGKYKVYIIDEVHMLSK---------------SAFNA 138 (709)
T ss_pred HHHhccCccceEEEeccc--cCCHHH----HHHHHHHHHhhhhhCCcEEEEEECccccCH---------------HHHHH
Confidence 01233343322 122233 444444332 23446999999998731 23455
Q ss_pred HHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHH
Q 001162 690 LVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDV 769 (1134)
Q Consensus 690 L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~l 769 (1134)
|+..++.... .+.+|++|+.+..+.+.+++ |+. .|.|++++.++....|+..+...++.++++.+..|
T Consensus 139 LLKtLEEPp~---------~v~fILaTtd~~kL~~TIrS--RC~-~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~I 206 (709)
T PRK08691 139 MLKTLEEPPE---------HVKFILATTDPHKVPVTVLS--RCL-QFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLL 206 (709)
T ss_pred HHHHHHhCCC---------CcEEEEEeCCccccchHHHH--HHh-hhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHH
Confidence 6666665432 36778888888899988887 764 78999999999999999999998999999999999
Q ss_pred hhhcCCCChhhHHHHHHHHHHH
Q 001162 770 ASKCDGYDAYDLEILVDRTVHA 791 (1134)
Q Consensus 770 a~~teG~s~~DL~~Lv~~a~~~ 791 (1134)
+..+.| +.+++..+++.++..
T Consensus 207 a~~A~G-slRdAlnLLDqaia~ 227 (709)
T PRK08691 207 GRAAAG-SMRDALSLLDQAIAL 227 (709)
T ss_pred HHHhCC-CHHHHHHHHHHHHHh
Confidence 999876 789999999887653
No 169
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=4.5e-12 Score=153.31 Aligned_cols=174 Identities=17% Similarity=0.204 Sum_probs=126.0
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCc------------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------------ 905 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~------------ 905 (1134)
+.+..|++|+|++.+++.|...+... +...++||+||+|||||++|+++|+.+...
T Consensus 10 yRP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 10 YRPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 34578999999999999999887642 223479999999999999999999988642
Q ss_pred ------------EEEEeCcccchhcccccHHHHHHHHHHh----hhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHh
Q 001162 906 ------------FISVKGPELLNKYIGASEQAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 969 (1134)
Q Consensus 906 ------------~i~i~~~el~~~~~G~se~~v~~lf~~A----~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL 969 (1134)
++++++..- ..-..++.+.+.+ ......||||||+|.| .....+.|+
T Consensus 78 sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L-----------t~~a~naLL 140 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHML-----------TREAFNALL 140 (624)
T ss_pred HHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhC-----------CHHHHHHHH
Confidence 444544211 1123344443333 2334579999999998 345678999
Q ss_pred hhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccC
Q 001162 970 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEG 1045 (1134)
Q Consensus 970 ~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g 1045 (1134)
+.|+. ....+++|++|+.++.+.+.+++ |+. .+.|+.++.++...+++..+.+.++. ++..++.|++.+.|
T Consensus 141 k~LEE--P~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G 212 (624)
T PRK14959 141 KTLEE--PPARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG 212 (624)
T ss_pred HHhhc--cCCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 98873 44567777888888888888888 664 67899999999999999888776542 33345666666653
No 170
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=3.4e-12 Score=155.69 Aligned_cols=196 Identities=19% Similarity=0.261 Sum_probs=139.7
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCce----------
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL---------- 620 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~---------- 620 (1134)
.+|.+++|.+..++.+.+.+.. ...+..+||+||+|+|||++|+.+|+.+......
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~--------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDL--------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 3577888988888776655432 1223457999999999999999999998753110
Q ss_pred --------eeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHH
Q 001162 621 --------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (1134)
Q Consensus 621 --------~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~ 692 (1134)
...++.++... ....+.++..+..+..........|+||||+|.|.. ...+.|+.
T Consensus 79 C~~i~~g~~~D~ieidaas--~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~---------------~a~NALLK 141 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAAS--RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFNALLK 141 (647)
T ss_pred HHHHHcCCCCCceeecccc--cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH---------------HHHHHHHH
Confidence 01234444432 123344444443332222223456999999999841 34566777
Q ss_pred HHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhh
Q 001162 693 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 772 (1134)
Q Consensus 693 ~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~ 772 (1134)
.+++... .+.+|.+|+.+..+.+.+++ |+ ..++|.+++.++..+.|+..+...++.+++..+..++..
T Consensus 142 tLEEPp~---------~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~ 209 (647)
T PRK07994 142 TLEEPPE---------HVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARA 209 (647)
T ss_pred HHHcCCC---------CeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 7776443 47788888889999999999 75 589999999999999999988877888999999999999
Q ss_pred cCCCChhhHHHHHHHHHH
Q 001162 773 CDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 773 teG~s~~DL~~Lv~~a~~ 790 (1134)
++| +.++...+++.++.
T Consensus 210 s~G-s~R~Al~lldqaia 226 (647)
T PRK07994 210 ADG-SMRDALSLTDQAIA 226 (647)
T ss_pred cCC-CHHHHHHHHHHHHH
Confidence 888 68888888877653
No 171
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=4.1e-12 Score=152.07 Aligned_cols=193 Identities=22% Similarity=0.246 Sum_probs=137.2
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCce-----------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~----------- 620 (1134)
+|.+++|.+..+..+...+.. ...+.++||+||+|||||++|+.+|+.+......
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~--------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILN--------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 477888888877766554321 2234679999999999999999999998643210
Q ss_pred -----------eeEEEEEecccccccchhhHHHHHHHHHHHHh----hcCCeEEEEcccchhccCCCCCCCCCCchhHHH
Q 001162 621 -----------VAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIA 685 (1134)
Q Consensus 621 -----------~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~----~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~ 685 (1134)
...++.+++.. ....+. ++.+++.+. .....|+||||+|.+.. .
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas--~~~vd~----Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~---------------~ 143 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAAS--KTSVDD----IRRIIESAEYKPLQGKHKIFIIDEVHMLSK---------------G 143 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccC--CCCHHH----HHHHHHHHHhccccCCcEEEEEEChhhcCH---------------H
Confidence 01233444322 122333 444444443 22346999999998841 2
Q ss_pred HHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHH
Q 001162 686 LTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEI 765 (1134)
Q Consensus 686 l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~ 765 (1134)
..+.|+..++.... .+++|++|+..+.+++.+++ |+. .++|.+++.++...+++..+...++.++++.
T Consensus 144 a~naLLk~LEepp~---------~~vfI~aTte~~kI~~tI~S--Rc~-~~ef~~ls~~el~~~L~~i~~~egi~ie~eA 211 (507)
T PRK06645 144 AFNALLKTLEEPPP---------HIIFIFATTEVQKIPATIIS--RCQ-RYDLRRLSFEEIFKLLEYITKQENLKTDIEA 211 (507)
T ss_pred HHHHHHHHHhhcCC---------CEEEEEEeCChHHhhHHHHh--cce-EEEccCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 34455555654322 46777778888889999988 764 7889999999999999999998899999999
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHHHH
Q 001162 766 LLDVASKCDGYDAYDLEILVDRTVHAA 792 (1134)
Q Consensus 766 l~~la~~teG~s~~DL~~Lv~~a~~~a 792 (1134)
+..++..++| +.+++..+++.++..+
T Consensus 212 L~~Ia~~s~G-slR~al~~Ldkai~~~ 237 (507)
T PRK06645 212 LRIIAYKSEG-SARDAVSILDQAASMS 237 (507)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHhh
Confidence 9999999887 8899999998876443
No 172
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=4.5e-12 Score=147.90 Aligned_cols=191 Identities=17% Similarity=0.250 Sum_probs=131.6
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCce-----------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~----------- 620 (1134)
+|.+++|.+..++.+.+.+.. ...+..+||+||+|+|||++|+++|+.+......
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~--------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSL--------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred chhhccChHHHHHHHHHHHHc--------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 467888888887776654421 1224558999999999999999999998632110
Q ss_pred -------eeEEEEEecccccccchhhHHHHHHHHHHHHh----hcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHH
Q 001162 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKF 689 (1134)
Q Consensus 621 -------~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~----~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~ 689 (1134)
...+..++... ...... ++.+.+.+. .....|++|||+|.+.. ...+.
T Consensus 80 ~~~~~~~~~d~~~~~~~~--~~~v~~----ir~i~~~~~~~p~~~~~kviIIDEa~~l~~---------------~a~na 138 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS--RTKVEE----MREILDNIYYSPSKSRFKVYLIDEVHMLSR---------------HSFNA 138 (363)
T ss_pred HHHhcCCCCceEEecccc--cCCHHH----HHHHHHHHhcCcccCCceEEEEEChhhcCH---------------HHHHH
Confidence 01223333221 112222 344444332 12345999999998841 22344
Q ss_pred HHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHH
Q 001162 690 LVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDV 769 (1134)
Q Consensus 690 L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~l 769 (1134)
|+..++.... .+.+|.+|+..+.+.+.+++ |+. .++|++|+.++..++++..++..+..++++.+..+
T Consensus 139 LLk~lEe~~~---------~~~fIl~t~~~~~l~~tI~S--Rc~-~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~i 206 (363)
T PRK14961 139 LLKTLEEPPQ---------HIKFILATTDVEKIPKTILS--RCL-QFKLKIISEEKIFNFLKYILIKESIDTDEYALKLI 206 (363)
T ss_pred HHHHHhcCCC---------CeEEEEEcCChHhhhHHHHh--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5555555332 36677777888889999988 764 88999999999999999999888888999999999
Q ss_pred hhhcCCCChhhHHHHHHHHHH
Q 001162 770 ASKCDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 770 a~~teG~s~~DL~~Lv~~a~~ 790 (1134)
+..+.| +++++..+++.++.
T Consensus 207 a~~s~G-~~R~al~~l~~~~~ 226 (363)
T PRK14961 207 AYHAHG-SMRDALNLLEHAIN 226 (363)
T ss_pred HHHcCC-CHHHHHHHHHHHHH
Confidence 998887 78888888887653
No 173
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=2e-12 Score=158.56 Aligned_cols=184 Identities=20% Similarity=0.278 Sum_probs=135.0
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC-------------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------- 904 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~------------- 904 (1134)
+.+..|++|+|++.+++.|...+... +.+..+|||||+|||||++|+++|+.++.
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~ 77 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP 77 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH
Confidence 34578999999999999999887632 23446899999999999999999998753
Q ss_pred -----------cEEEEeCcccchhcccccHHHHHHHHHHhhh----cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHh
Q 001162 905 -----------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 969 (1134)
Q Consensus 905 -----------~~i~i~~~el~~~~~G~se~~v~~lf~~A~~----~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL 969 (1134)
+++++++.. ...-+.++++.+.+.. ....|++|||+|.| +....|.|+
T Consensus 78 ~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L-----------t~~a~naLL 140 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHML-----------STNAFNALL 140 (576)
T ss_pred HHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhC-----------CHHHHHHHH
Confidence 244444432 1223557777766542 23469999999998 345789999
Q ss_pred hhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcH
Q 001162 970 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSG 1048 (1134)
Q Consensus 970 ~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg 1048 (1134)
+.|+ +..+.++||.+|+.++.|.+.+++ |+ ..+.|..++.++....++.++++.++. ++..+..+++.+.| +.
T Consensus 141 k~LE--epp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~l 214 (576)
T PRK14965 141 KTLE--EPPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SM 214 (576)
T ss_pred HHHH--cCCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CH
Confidence 9998 455677788888889999999998 55 477899999999999999888776654 33446667777764 44
Q ss_pred HHHHHHHH
Q 001162 1049 ADLQALLS 1056 (1134)
Q Consensus 1049 ~dl~~l~~ 1056 (1134)
+++.+++.
T Consensus 215 r~al~~Ld 222 (576)
T PRK14965 215 RDSLSTLD 222 (576)
T ss_pred HHHHHHHH
Confidence 45444443
No 174
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=1.7e-12 Score=156.02 Aligned_cols=184 Identities=20% Similarity=0.249 Sum_probs=131.9
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC-------------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------- 904 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~------------- 904 (1134)
+.+..|++++|++.+++.+...+... +.+.++||+||+|+|||++|+++|+.+..
T Consensus 10 yRP~~F~dIIGQe~iv~~L~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~ 77 (605)
T PRK05896 10 YRPHNFKQIIGQELIKKILVNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS 77 (605)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 34578999999999999998876531 23356999999999999999999998742
Q ss_pred -----------cEEEEeCcccchhcccccHHHHHHHHHHhhh----cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHh
Q 001162 905 -----------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 969 (1134)
Q Consensus 905 -----------~~i~i~~~el~~~~~G~se~~v~~lf~~A~~----~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL 969 (1134)
.++.++++.. ..-..+|++.+.+.. +...|++|||+|.|. ....+.|+
T Consensus 78 sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-----------~~A~NaLL 140 (605)
T PRK05896 78 VCESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-----------TSAWNALL 140 (605)
T ss_pred HHHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-----------HHHHHHHH
Confidence 3344443221 123457777765543 234699999999983 34678899
Q ss_pred hhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcH
Q 001162 970 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSG 1048 (1134)
Q Consensus 970 ~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg 1048 (1134)
..|+ ++...+++|.+|+.++.+.+++++ |+. .+.|++++.++....++..+++.++. ++..+..++..+.| +.
T Consensus 141 KtLE--EPp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dl 214 (605)
T PRK05896 141 KTLE--EPPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SL 214 (605)
T ss_pred HHHH--hCCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 9887 444567777788889999999998 664 68999999999999999888766542 23335666766654 44
Q ss_pred HHHHHHHH
Q 001162 1049 ADLQALLS 1056 (1134)
Q Consensus 1049 ~dl~~l~~ 1056 (1134)
+++.+++.
T Consensus 215 R~AlnlLe 222 (605)
T PRK05896 215 RDGLSILD 222 (605)
T ss_pred HHHHHHHH
Confidence 44444444
No 175
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.42 E-value=3.8e-12 Score=154.00 Aligned_cols=218 Identities=16% Similarity=0.167 Sum_probs=137.1
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc----------CCcEEEEeCcc
Q 001162 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVKGPE 913 (1134)
Q Consensus 844 ~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~----------~~~~i~i~~~e 913 (1134)
+.|.+-++-.+.|..++...+. +..+...++++|+||||||++++.+.+++ ...++.|+|..
T Consensus 755 D~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 4566777777777666653221 11222235699999999999999998765 25688999965
Q ss_pred cchhc----------------cc-ccHHHHHHHHHHhh--hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccc
Q 001162 914 LLNKY----------------IG-ASEQAVRDIFSKAT--AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDG 974 (1134)
Q Consensus 914 l~~~~----------------~G-~se~~v~~lf~~A~--~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~ 974 (1134)
+...+ .| .+...+..+|.... .....||+|||||.|..+ ...++-.|.....
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK--------~QDVLYnLFR~~~- 897 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK--------TQKVLFTLFDWPT- 897 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc--------HHHHHHHHHHHhh-
Confidence 43221 11 12345667776552 234579999999999653 2344444444332
Q ss_pred ccccccEEEEEecCC---CCccchhhcCcCcccc-eeecCCCCHHHHHHHHHHHHccCC-CCCcccHHHHHHhccCCcHH
Q 001162 975 VEVLTGVFVFAATSR---PDLLDAALLRPGRLDR-LLFCDFPSPRERLDILKVISRKLP-LADDVDLEAIAHMTEGFSGA 1049 (1134)
Q Consensus 975 ~~~~~~v~vIatTn~---p~~ld~allrpgRfd~-~i~~~~p~~~er~~Il~~~~~~~~-~~~~vd~~~La~~t~g~sg~ 1049 (1134)
....+++|||++|. ++.++|.+.+ ||.. .+.|++|+.+++.+||+.++.... +-++..++.+|+.+. ..++
T Consensus 898 -~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA-q~SG 973 (1164)
T PTZ00112 898 -KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA-NVSG 973 (1164)
T ss_pred -ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh-hcCC
Confidence 23457889999986 5558898888 6653 478999999999999999887642 222333555565443 3346
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhc
Q 001162 1050 DLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 1093 (1134)
Q Consensus 1050 dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~ 1093 (1134)
|++.++. ....|++. . ....|+.+|+..|+..+
T Consensus 974 DARKALD-ILRrAgEi-----k-----egskVT~eHVrkAleei 1006 (1164)
T PTZ00112 974 DIRKALQ-ICRKAFEN-----K-----RGQKIVPRDITEATNQL 1006 (1164)
T ss_pred HHHHHHH-HHHHHHhh-----c-----CCCccCHHHHHHHHHHH
Confidence 7665433 12222221 1 11368999999998765
No 176
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.42 E-value=3.4e-12 Score=151.42 Aligned_cols=188 Identities=22% Similarity=0.288 Sum_probs=123.8
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc-----CCcEEEEeCcccchhcccccHH-HHHHHHHHhhhcCCeEEEEcCcccccCC
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQ-AVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~-----~~~~i~i~~~el~~~~~G~se~-~v~~lf~~A~~~~P~VLfiDEid~l~~~ 952 (1134)
.+++||||+|||||+|++++++++ +..++.+++.++...+.+.... .+..+.+..+ .+.+|+|||+|.+..+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGK 214 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCC
Confidence 468999999999999999999887 5789999998877655432111 1222222222 2579999999998643
Q ss_pred CCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCc---cchhhcCcCccc--ceeecCCCCHHHHHHHHHHHHcc
Q 001162 953 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRK 1027 (1134)
Q Consensus 953 r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~---ld~allrpgRfd--~~i~~~~p~~~er~~Il~~~~~~ 1027 (1134)
. ....+|+..++.+...+..+|++++..|.. +++.+.+ ||. ..+.|++|+.++|..|++..++.
T Consensus 215 ~---------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 215 E---------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred H---------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 1 122344444444333445566666666655 5688888 886 47899999999999999999876
Q ss_pred CCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhh
Q 001162 1028 LPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASK 1092 (1134)
Q Consensus 1028 ~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~ 1092 (1134)
.++. ++..++.||.... -+.+++..++......|... ...||.+.+.+++..
T Consensus 284 ~~~~l~~e~l~~ia~~~~-~~~r~l~~~l~~l~~~a~~~------------~~~it~~~~~~~L~~ 336 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIR-SNVRELEGALNRLLAYASLT------------GKPITLELAKEALKD 336 (405)
T ss_pred cCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHh------------CCCCCHHHHHHHHHH
Confidence 6553 3334677787766 35677777666544333211 123666666666653
No 177
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.41 E-value=1.9e-12 Score=148.63 Aligned_cols=160 Identities=15% Similarity=0.215 Sum_probs=111.9
Q ss_pred cCCCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccc
Q 001162 836 AEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 915 (1134)
Q Consensus 836 ~~~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~ 915 (1134)
.++.+..++++.|.+++++.+...+... +.+..+||+||||+|||++|++++++.+.+++.+++++
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-- 78 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVKKG------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-- 78 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHhcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--
Confidence 3455678999999999999998887521 22345666999999999999999999999999999876
Q ss_pred hhcccccHHHHHHHHHHh-hhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccc
Q 001162 916 NKYIGASEQAVRDIFSKA-TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLD 994 (1134)
Q Consensus 916 ~~~~G~se~~v~~lf~~A-~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld 994 (1134)
.. +......+....... ....+.||+|||+|.+.. ....+.+...|+.. ..++.||.+||.++.++
T Consensus 79 ~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----------~~~~~~L~~~le~~--~~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 79 CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----------ADAQRHLRSFMEAY--SKNCSFIITANNKNGII 145 (316)
T ss_pred cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC----------HHHHHHHHHHHHhc--CCCceEEEEcCChhhch
Confidence 21 111111122221111 113568999999998722 12233444445532 34567777899999999
Q ss_pred hhhcCcCcccceeecCCCCHHHHHHHHHHHH
Q 001162 995 AALLRPGRLDRLLFCDFPSPRERLDILKVIS 1025 (1134)
Q Consensus 995 ~allrpgRfd~~i~~~~p~~~er~~Il~~~~ 1025 (1134)
+++++ ||. .+.|+.|+.+++..+++.++
T Consensus 146 ~~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 146 EPLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred HHHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 99999 775 67999999999988876543
No 178
>PLN03025 replication factor C subunit; Provisional
Probab=99.41 E-value=4.2e-12 Score=145.75 Aligned_cols=189 Identities=20% Similarity=0.215 Sum_probs=126.7
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~ 631 (1134)
++.++.|.+..++.+...+ .. .. ..|+||+||||||||++|+++|+++.... ....+..+++++
T Consensus 11 ~l~~~~g~~~~~~~L~~~~----~~----------~~-~~~lll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~eln~sd 74 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIA----RD----------GN-MPNLILSGPPGTGKTTSILALAHELLGPN-YKEAVLELNASD 74 (319)
T ss_pred CHHHhcCcHHHHHHHHHHH----hc----------CC-CceEEEECCCCCCHHHHHHHHHHHHhccc-Cccceeeecccc
Confidence 4566777776666554432 11 11 23699999999999999999999974221 113355566654
Q ss_pred ccccchhhHHHHHHHHHHHHh---hcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCC
Q 001162 632 LSLEKGPIIRQALSNFISEAL---DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1134)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a~---~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1134)
..+ .+.++..+....+... .....|++|||+|.+.. ...+.|...++.+..
T Consensus 75 ~~~--~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~---------------~aq~aL~~~lE~~~~--------- 128 (319)
T PLN03025 75 DRG--IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS---------------GAQQALRRTMEIYSN--------- 128 (319)
T ss_pred ccc--HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH---------------HHHHHHHHHHhcccC---------
Confidence 332 2233333332211110 12357999999999852 223445566655432
Q ss_pred cEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHH
Q 001162 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVD 786 (1134)
Q Consensus 709 ~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~ 786 (1134)
...+|.++|....+.+++++ |.. .++|++|+.++....++..+...++.++++.+..++..+.| +.+.+.+.++
T Consensus 129 ~t~~il~~n~~~~i~~~L~S--Rc~-~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq 202 (319)
T PLN03025 129 TTRFALACNTSSKIIEPIQS--RCA-IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQ 202 (319)
T ss_pred CceEEEEeCCccccchhHHH--hhh-cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 24577788888888899998 754 89999999999999999999988999999999999998776 4555555554
No 179
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.41 E-value=2.3e-12 Score=152.88 Aligned_cols=194 Identities=19% Similarity=0.308 Sum_probs=129.9
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHH-HHHHHHHHHhhcCCeEEEEcccchhcc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ-ALSNFISEALDHAPSIVIFDNLDSIIS 669 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~-~l~~~f~~a~~~~PsIL~IDEiD~L~~ 669 (1134)
.+++||||+|+|||+|++++++++..... ...++++++..+.......... .+.. |.... ..+.+|+|||+|.+.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~-~~~v~yi~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNP-NAKVVYVSSEKFTNDFVNALRNNKMEE-FKEKY-RSVDLLLIDDIQFLAG 213 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCC-CCcEEEEEHHHHHHHHHHHHHcCCHHH-HHHHH-HhCCEEEEehhhhhcC
Confidence 45899999999999999999999854321 2567888887765332222211 1111 22211 2467999999999853
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCC---CChhhccCCCcc--ccccCCCCCHH
Q 001162 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAAS 744 (1134)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~---Ld~aL~~~gRF~--~~i~l~~P~~e 744 (1134)
.. .....+...+....+ .+ ..++|++...+.. +++.+++ ||. ..+.|++|+.+
T Consensus 214 ~~---------~~~~~l~~~~n~~~~----~~-------~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~ 271 (405)
T TIGR00362 214 KE---------RTQEEFFHTFNALHE----NG-------KQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLE 271 (405)
T ss_pred CH---------HHHHHHHHHHHHHHH----CC-------CCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHH
Confidence 10 111233333333222 11 1345555555443 5688888 775 47899999999
Q ss_pred HHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhc
Q 001162 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1134)
Q Consensus 745 eR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1134)
+|.+|++..+...++.++++++..||....+ +.++|+.++.+....+... ...++.+...+++..
T Consensus 272 ~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~~------------~~~it~~~~~~~L~~ 336 (405)
T TIGR00362 272 TRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASLT------------GKPITLELAKEALKD 336 (405)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh------------CCCCCHHHHHHHHHH
Confidence 9999999999988999999999999988877 7889999998887655322 133666666666654
No 180
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.41 E-value=9.3e-12 Score=153.73 Aligned_cols=224 Identities=22% Similarity=0.319 Sum_probs=138.4
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc----------CCcEEEE
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISV 909 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~----------~~~~i~i 909 (1134)
+..|++++|.+...+.+...+..+ .+.+++|+||||||||++|+++++.. +.+|+.+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~-------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASP-------------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcC-------------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 468899999999888776655321 23479999999999999999998765 3579999
Q ss_pred eCcccc-------hhcccccHH----HHHHHHHHh----------hhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhH
Q 001162 910 KGPELL-------NKYIGASEQ----AVRDIFSKA----------TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQF 968 (1134)
Q Consensus 910 ~~~el~-------~~~~G~se~----~v~~lf~~A----------~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~l 968 (1134)
++..+- ..+.|.... ..+..+... ......+|||||++.|. ......|
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-----------~~~Q~~L 285 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-----------PLLQNKL 285 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-----------HHHHHHH
Confidence 987652 112221111 011111110 01123499999999883 3344445
Q ss_pred hhhccccc--------------------------ccccEEEE-EecCCCCccchhhcCcCcccceeecCCCCHHHHHHHH
Q 001162 969 LTELDGVE--------------------------VLTGVFVF-AATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDIL 1021 (1134)
Q Consensus 969 L~~ld~~~--------------------------~~~~v~vI-atTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il 1021 (1134)
+..|+.-. ....++++ +||+.++.+++++++ ||. .++|++++.+++..|+
T Consensus 286 l~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il 362 (615)
T TIGR02903 286 LKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIV 362 (615)
T ss_pred HHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHH
Confidence 54443210 11124444 455668889999988 887 5689999999999999
Q ss_pred HHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhcCC
Q 001162 1022 KVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARP 1095 (1134)
Q Consensus 1022 ~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~~p 1095 (1134)
+..+.+.++. .+..++.|+.++. .|+...+++..+...++.+.... .+......|+.+|+.++++.-+-
T Consensus 363 ~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~---~~~~~~~~I~~edv~~~l~~~r~ 432 (615)
T TIGR02903 363 LNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEA---GKENDKVTITQDDVYEVIQISRL 432 (615)
T ss_pred HHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHh---ccCCCCeeECHHHHHHHhCCCcC
Confidence 9988876532 2223455555542 45555455555544433332100 11223457999999999976543
No 181
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=6e-12 Score=147.50 Aligned_cols=173 Identities=21% Similarity=0.276 Sum_probs=124.0
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCc------------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------------ 905 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~------------ 905 (1134)
+.+..|++++|++.+.+.+...+... +.+.++|||||||+|||++|+++|+.+...
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~ 78 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN 78 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 34578999999999999998887642 234589999999999999999999987542
Q ss_pred EEEEeCcccchhcccccHHHHHHHHHHhhh----cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccE
Q 001162 906 FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGV 981 (1134)
Q Consensus 906 ~i~i~~~el~~~~~G~se~~v~~lf~~A~~----~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v 981 (1134)
++.++.. .......++.+++.+.. +.+.|+||||+|.+. ....+.++..|+. .....
T Consensus 79 ~~~l~~~------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~-----------~~~~~~ll~~le~--~~~~~ 139 (367)
T PRK14970 79 IFELDAA------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS-----------SAAFNAFLKTLEE--PPAHA 139 (367)
T ss_pred eEEeccc------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC-----------HHHHHHHHHHHhC--CCCce
Confidence 1222211 11234667788876643 335699999999873 3456788877764 23345
Q ss_pred EEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhcc
Q 001162 982 FVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTE 1044 (1134)
Q Consensus 982 ~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~ 1044 (1134)
++|.+|+.+..+.+++.+ |+ ..+.|++|+.++...++...+++.++. ++..++.|+..+.
T Consensus 140 ~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~ 200 (367)
T PRK14970 140 IFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKAD 200 (367)
T ss_pred EEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCC
Confidence 555567777888899988 55 368999999999999999888776653 3344666666554
No 182
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=1e-11 Score=151.03 Aligned_cols=185 Identities=22% Similarity=0.280 Sum_probs=133.6
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC-------------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------- 904 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~------------- 904 (1134)
+.+..|++|.|++.+++.|+..+... +.+..+|||||+|+|||++|+++|+.+..
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 34678999999999999999887632 23446999999999999999999998753
Q ss_pred -----------cEEEEeCcccchhcccccHHHHHHHHHHhh----hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHh
Q 001162 905 -----------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 969 (1134)
Q Consensus 905 -----------~~i~i~~~el~~~~~G~se~~v~~lf~~A~----~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL 969 (1134)
+++.+++.. ...-+.++++.+.+. .+...|++|||+|.| .....+.|+
T Consensus 78 ~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L-----------s~~a~naLL 140 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML-----------SNSAFNALL 140 (563)
T ss_pred HHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc-----------CHHHHHHHH
Confidence 233333221 012345666665442 345579999999998 345788999
Q ss_pred hhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcH
Q 001162 970 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSG 1048 (1134)
Q Consensus 970 ~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg 1048 (1134)
..|+ ++...+++|++|+.++.+.+++++ |+. .+.|.+++.++...+++..++..++. ++..+..|++.+.| +.
T Consensus 141 K~LE--epp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dl 214 (563)
T PRK06647 141 KTIE--EPPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SV 214 (563)
T ss_pred Hhhc--cCCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 9987 345667777788888889999998 665 57899999999999999888766654 33346667776664 45
Q ss_pred HHHHHHHHH
Q 001162 1049 ADLQALLSD 1057 (1134)
Q Consensus 1049 ~dl~~l~~~ 1057 (1134)
+++.+++..
T Consensus 215 R~alslLdk 223 (563)
T PRK06647 215 RDAYTLFDQ 223 (563)
T ss_pred HHHHHHHHH
Confidence 555555443
No 183
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.40 E-value=5.4e-12 Score=151.89 Aligned_cols=195 Identities=16% Similarity=0.199 Sum_probs=131.6
Q ss_pred eEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCC
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSS 671 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~ 671 (1134)
.++|||++|+|||+|++++++++.... ....+.|+++..+.......+.....+.|... ...+++|+|||++.+.++.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~-~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLY-PGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE 393 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH
Confidence 499999999999999999999875321 11568899998876544443332222233332 2356899999999885311
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCC---CCCChhhccCCCc--cccccCCCCCHHHH
Q 001162 672 SDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSL---EKIPQSLTSSGRF--DFHVQLPAPAASER 746 (1134)
Q Consensus 672 ~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~---~~Ld~aL~~~gRF--~~~i~l~~P~~eeR 746 (1134)
.....++..|..+.+ .+ .-+||++...+ ..+++.|++ || ...+.|..|+.+.|
T Consensus 394 ---------~tqeeLF~l~N~l~e----~g-------k~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR 451 (617)
T PRK14086 394 ---------STQEEFFHTFNTLHN----AN-------KQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETR 451 (617)
T ss_pred ---------HHHHHHHHHHHHHHh----cC-------CCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHH
Confidence 112244443333322 11 12344333333 356789999 66 45679999999999
Q ss_pred HHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhcc
Q 001162 747 KAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1134)
Q Consensus 747 ~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1134)
.+||+..+..+++.++++++.+|+....+ +.+.|+.++.+....+... ...++.+.....++.+
T Consensus 452 ~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~------------~~~itl~la~~vL~~~ 515 (617)
T PRK14086 452 IAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLN------------RQPVDLGLTEIVLRDL 515 (617)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhh------------CCCCCHHHHHHHHHHh
Confidence 99999999999999999999999998876 6888888888876544322 1336666666666544
No 184
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=5.9e-12 Score=150.96 Aligned_cols=184 Identities=20% Similarity=0.288 Sum_probs=127.4
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC-------------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------- 904 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~------------- 904 (1134)
+.+..|+++.|++.+.+.|...+... +.+..+|||||+|+|||++|+++|+.++.
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 34578999999999999998887632 23345789999999999999999998753
Q ss_pred -----------cEEEEeCcccchhcccccHHHHHHHHHHhh----hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHh
Q 001162 905 -----------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 969 (1134)
Q Consensus 905 -----------~~i~i~~~el~~~~~G~se~~v~~lf~~A~----~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL 969 (1134)
.++.++++. ...-..+|.+.+.+. .+.+.|++|||+|.+ +....+.|+
T Consensus 78 nc~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~L-----------t~~a~naLL 140 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHML-----------TKEAFNALL 140 (486)
T ss_pred HHHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhc-----------CHHHHHHHH
Confidence 122222211 112344566655553 234579999999988 345678888
Q ss_pred hhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcH
Q 001162 970 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSG 1048 (1134)
Q Consensus 970 ~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg 1048 (1134)
..|+. +...+++|.+|+.++.+.+++.+ |+. .+.|++|+.++...+++.+++..++. ++..+..|+..+.| +.
T Consensus 141 k~LEe--pp~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~l 214 (486)
T PRK14953 141 KTLEE--PPPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GM 214 (486)
T ss_pred HHHhc--CCCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 88874 33445555567778888889888 664 68999999999999999998877654 22335566666553 33
Q ss_pred HHHHHHHH
Q 001162 1049 ADLQALLS 1056 (1134)
Q Consensus 1049 ~dl~~l~~ 1056 (1134)
+++.+++.
T Consensus 215 r~al~~Ld 222 (486)
T PRK14953 215 RDAASLLD 222 (486)
T ss_pred HHHHHHHH
Confidence 44444443
No 185
>PRK04195 replication factor C large subunit; Provisional
Probab=99.40 E-value=7.2e-12 Score=151.58 Aligned_cols=186 Identities=19% Similarity=0.308 Sum_probs=130.7
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s 630 (1134)
.++.++.|.+..++.+.+.+..... ..++.++||+||||||||++|+++|++++ ..++.++++
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~~-----------g~~~~~lLL~GppG~GKTtla~ala~el~------~~~ielnas 73 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWLK-----------GKPKKALLLYGPPGVGKTSLAHALANDYG------WEVIELNAS 73 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhc-----------CCCCCeEEEECCCCCCHHHHHHHHHHHcC------CCEEEEccc
Confidence 3477888899888888777654332 23367799999999999999999999987 667888887
Q ss_pred cccccchhhHHHHHHHHHHHHhh------cCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccc
Q 001162 631 RLSLEKGPIIRQALSNFISEALD------HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 704 (1134)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~------~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~ 704 (1134)
+.... .. +..+...+.. ..+.+|+|||+|.+.+. . . ......|.+.++..
T Consensus 74 d~r~~--~~----i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~----~---d----~~~~~aL~~~l~~~------- 129 (482)
T PRK04195 74 DQRTA--DV----IERVAGEAATSGSLFGARRKLILLDEVDGIHGN----E---D----RGGARAILELIKKA------- 129 (482)
T ss_pred ccccH--HH----HHHHHHHhhccCcccCCCCeEEEEecCcccccc----c---c----hhHHHHHHHHHHcC-------
Confidence 64421 12 2233322221 24679999999998631 0 0 01233444444421
Q ss_pred cCCCcEEEEEecCCCCCCCh-hhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHH
Q 001162 705 CGIGPIAFVASAQSLEKIPQ-SLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEI 783 (1134)
Q Consensus 705 ~~~~~V~vIattn~~~~Ld~-aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~ 783 (1134)
+..+|+++|.+..+.+ .+++ |+ ..+.|++|+.+++..+++..+...++.++++++..|+..+.| |++.
T Consensus 130 ----~~~iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ 198 (482)
T PRK04195 130 ----KQPIILTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRS 198 (482)
T ss_pred ----CCCEEEeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHH
Confidence 1346667788777776 6665 44 489999999999999999999988999999999999998766 5655
Q ss_pred HHHHH
Q 001162 784 LVDRT 788 (1134)
Q Consensus 784 Lv~~a 788 (1134)
++...
T Consensus 199 ain~L 203 (482)
T PRK04195 199 AINDL 203 (482)
T ss_pred HHHHH
Confidence 55543
No 186
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=5.9e-12 Score=150.79 Aligned_cols=187 Identities=22% Similarity=0.243 Sum_probs=133.4
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC-------------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------- 904 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~------------- 904 (1134)
+.+..|++++|++.+++.|...+... +.+..+|||||+|+|||++|+++|+.+..
T Consensus 8 yRP~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 8 YRPKHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 34678999999999999999887532 23345799999999999999999998731
Q ss_pred -----------cEEEEeCcccchhcccccHHHHHHHHHHhhh----cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHh
Q 001162 905 -----------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 969 (1134)
Q Consensus 905 -----------~~i~i~~~el~~~~~G~se~~v~~lf~~A~~----~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL 969 (1134)
.++.++++.- ..-+.++++.+.+.. +...|++|||+|.| .....+.||
T Consensus 76 ~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-----------t~~A~NALL 138 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-----------TKEAFNALL 138 (535)
T ss_pred HHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHHHHHH
Confidence 2333333210 123567777765421 23469999999998 456788999
Q ss_pred hhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcH
Q 001162 970 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSG 1048 (1134)
Q Consensus 970 ~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg 1048 (1134)
+.|+.. ...+.+|.+|+.+..+.+++++ |+ ..++|.+++.++....++.++++.++. ++..+..|++.+.| +.
T Consensus 139 K~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dl 212 (535)
T PRK08451 139 KTLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SL 212 (535)
T ss_pred HHHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 999843 4456666667778889999998 65 478999999999999999888876654 33446667776654 55
Q ss_pred HHHHHHHHHHH
Q 001162 1049 ADLQALLSDAQ 1059 (1134)
Q Consensus 1049 ~dl~~l~~~A~ 1059 (1134)
+++.+++..+.
T Consensus 213 R~alnlLdqai 223 (535)
T PRK08451 213 RDTLTLLDQAI 223 (535)
T ss_pred HHHHHHHHHHH
Confidence 66555555443
No 187
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.39 E-value=4.7e-12 Score=152.04 Aligned_cols=189 Identities=21% Similarity=0.279 Sum_probs=124.4
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc-----CCcEEEEeCcccchhcccccHH-HHHHHHHHhhhcCCeEEEEcCcccccCC
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQ-AVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~-----~~~~i~i~~~el~~~~~G~se~-~v~~lf~~A~~~~P~VLfiDEid~l~~~ 952 (1134)
.+++||||||||||+|++++|+++ +..++.+++.++.+.+.+.... ....+.+..+ .+.+|+|||+|.+..+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCC
Confidence 469999999999999999999987 5678999998887665433221 1122222222 4679999999998543
Q ss_pred CCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCc---cchhhcCcCccc--ceeecCCCCHHHHHHHHHHHHcc
Q 001162 953 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRK 1027 (1134)
Q Consensus 953 r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~---ld~allrpgRfd--~~i~~~~p~~~er~~Il~~~~~~ 1027 (1134)
+ ....+|+..++.+...+..+|++++..|.. +++.+.+ ||. ..+.+.+|+.++|..|++..++.
T Consensus 227 ~---------~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 227 E---------RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred H---------HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 1 122344444444333445566666666655 6788888 885 57899999999999999998876
Q ss_pred CCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhc
Q 001162 1028 LPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 1093 (1134)
Q Consensus 1028 ~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~ 1093 (1134)
.++. ++..++.||....| +.++|..++......|... ...||.+.+.+++...
T Consensus 296 ~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~------------~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 296 EGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLT------------GKPITLELAKEALKDL 349 (450)
T ss_pred cCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhh------------CCCCCHHHHHHHHHHh
Confidence 5442 23336667766653 4566666555443332211 1247777777777653
No 188
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.38 E-value=9.5e-12 Score=136.38 Aligned_cols=167 Identities=17% Similarity=0.222 Sum_probs=115.1
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccC
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1134)
.+++||||+|||||+|++++++.+.... ..+.+++++...... . .+.+.+. ...+|+|||++.+.+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~---~~v~y~~~~~~~~~~----~-~~~~~~~-----~~dlliiDdi~~~~~~ 112 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRG---RAVGYVPLDKRAWFV----P-EVLEGME-----QLSLVCIDNIECIAGD 112 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEEHHHHhhhh----H-HHHHHhh-----hCCEEEEeChhhhcCC
Confidence 4699999999999999999999876432 445666665432211 1 1111121 1258999999988521
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCC---CChhhccCCCcc--ccccCCCCCHHH
Q 001162 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAASE 745 (1134)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~---Ld~aL~~~gRF~--~~i~l~~P~~ee 745 (1134)
......++..+...++. +. ..+++++++++.. +.+.|++ |+. .++.+.+|+.++
T Consensus 113 ---------~~~~~~lf~l~n~~~e~----g~------~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~ 171 (235)
T PRK08084 113 ---------ELWEMAIFDLYNRILES----GR------TRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEE 171 (235)
T ss_pred ---------HHHHHHHHHHHHHHHHc----CC------CeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHH
Confidence 11222445555444432 10 1344555555555 5789999 774 688999999999
Q ss_pred HHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 001162 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1134)
Q Consensus 746 R~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a 792 (1134)
|.++++..+..+++.++++++.+++...+| +.+.+..++++..+.+
T Consensus 172 ~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~ 217 (235)
T PRK08084 172 KLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRAS 217 (235)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHH
Confidence 999999988888899999999999999988 7888888888764333
No 189
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.38 E-value=6.7e-12 Score=148.44 Aligned_cols=194 Identities=23% Similarity=0.270 Sum_probs=146.6
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCc-------EEE--
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------FIS-- 908 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~-------~i~-- 908 (1134)
+.+..|++++|++.+.+.|...+..- +...++||.||.|||||++||.+|+.+++. +..
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 34678999999999999999998753 334579999999999999999999988542 111
Q ss_pred ----EeC---cccc--hhcccccHHHHHHHHHHhh----hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccc
Q 001162 909 ----VKG---PELL--NKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV 975 (1134)
Q Consensus 909 ----i~~---~el~--~~~~G~se~~v~~lf~~A~----~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~ 975 (1134)
++. .|++ +.-....-+.+|++.+.+. .+.+.|++|||+|.| +..++|.||+.|+
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-----------S~~afNALLKTLE-- 144 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-----------SKQAFNALLKTLE-- 144 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh-----------hHHHHHHHhcccc--
Confidence 111 1111 0111223467888888874 355679999999998 5679999999998
Q ss_pred cccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCC-cccHHHHHHhccCCcHHHHHHH
Q 001162 976 EVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLAD-DVDLEAIAHMTEGFSGADLQAL 1054 (1134)
Q Consensus 976 ~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~-~vd~~~La~~t~g~sg~dl~~l 1054 (1134)
++..+|+||.+|..|+.+.+.+++ |+. .+.|..-+.++....|..++.+.++.- +-.+..+|+.++| +.+|...+
T Consensus 145 EPP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalsl 220 (515)
T COG2812 145 EPPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSL 220 (515)
T ss_pred cCccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHH
Confidence 778889999999999999999998 443 456778899999999999998887763 3346777777775 67887777
Q ss_pred HHHHHH
Q 001162 1055 LSDAQL 1060 (1134)
Q Consensus 1055 ~~~A~~ 1060 (1134)
+..|..
T Consensus 221 LDq~i~ 226 (515)
T COG2812 221 LDQAIA 226 (515)
T ss_pred HHHHHH
Confidence 665543
No 190
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=8.7e-12 Score=147.11 Aligned_cols=174 Identities=18% Similarity=0.194 Sum_probs=121.3
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCc------------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------------ 905 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~------------ 905 (1134)
+.+..|++|.|++.+++.|+..+... +.+.++||+||||||||++|+++|+.+...
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 34578999999999999998877632 334569999999999999999999988542
Q ss_pred --------------------EEEEeCcccchhcccccHHHHHHHHHHhh----hcCCeEEEEcCcccccCCCCCCCCcch
Q 001162 906 --------------------FISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVT 961 (1134)
Q Consensus 906 --------------------~i~i~~~el~~~~~G~se~~v~~lf~~A~----~~~P~VLfiDEid~l~~~r~~~~~~~~ 961 (1134)
++.+++.+. ..-+.++++.+.+. .+...|+||||+|.+.
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~----------- 140 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS----------- 140 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC-----------
Confidence 222222110 12356677666552 1234699999999983
Q ss_pred hhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHH
Q 001162 962 DRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIA 1040 (1134)
Q Consensus 962 ~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La 1040 (1134)
....+.|+..|+ +..+.+++|.+|+.+..+-+++.+ |+. .+.|++++.++....++..++..++. ++..++.|+
T Consensus 141 ~~~~~~LLk~LE--ep~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~ 215 (397)
T PRK14955 141 IAAFNAFLKTLE--EPPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIG 215 (397)
T ss_pred HHHHHHHHHHHh--cCCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 345677888886 333455555566777788888887 554 78899999999998998888765542 333355666
Q ss_pred HhccC
Q 001162 1041 HMTEG 1045 (1134)
Q Consensus 1041 ~~t~g 1045 (1134)
..+.|
T Consensus 216 ~~s~g 220 (397)
T PRK14955 216 RKAQG 220 (397)
T ss_pred HHcCC
Confidence 66553
No 191
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=2e-11 Score=145.59 Aligned_cols=173 Identities=18% Similarity=0.262 Sum_probs=124.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC--------------
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL-------------- 904 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~-------------- 904 (1134)
.+..|++|+|++.+++.|...+... +.+..+|||||+|+|||++|+++|+.+..
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 4578999999999999998887632 23456899999999999999999997743
Q ss_pred -----------cEEEEeCcccchhcccccHHHHHHHHHHh----hhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHh
Q 001162 905 -----------RFISVKGPELLNKYIGASEQAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 969 (1134)
Q Consensus 905 -----------~~i~i~~~el~~~~~G~se~~v~~lf~~A----~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL 969 (1134)
+++.+++... . .-..++.+.+.. ..+.+.|+||||+|.+. ....+.|+
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt-----------~~~~n~LL 142 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT-----------KEAFNSLL 142 (451)
T ss_pred HHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC-----------HHHHHHHH
Confidence 2444443221 1 123444444333 22456799999999983 34678899
Q ss_pred hhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccC
Q 001162 970 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEG 1045 (1134)
Q Consensus 970 ~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g 1045 (1134)
..|+. ..+.+++|++|+.++.+.+++++ |+. .+.|+.++.++....++..+++.++. ++..++.|+..+.|
T Consensus 143 k~lEe--p~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 143 KTLEE--PPQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred HHhhc--CCCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 98884 34567777777888889999998 664 68999999999999999888776643 33346667766653
No 192
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.3e-11 Score=148.61 Aligned_cols=193 Identities=19% Similarity=0.244 Sum_probs=132.9
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc------------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~------------ 619 (1134)
.|.++.|.+..++.+...+.. ...+..+||||||||||||+|+++|+.+.....
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~--------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQ--------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 467888888877776665432 122344699999999999999999999863211
Q ss_pred -----eeeEEEEEecccccccchhhHHHHHHHHHHH-HhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001162 620 -----LVAHIVFVCCSRLSLEKGPIIRQALSNFISE-ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1134)
Q Consensus 620 -----~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~-a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1134)
....+..++++. ......++.. .+.+.. .....+.|+||||+|.+. ....+.|+..
T Consensus 78 ~i~~~~h~dv~el~~~~--~~~vd~iR~l-~~~~~~~p~~~~~kVVIIDEad~ls---------------~~a~naLLk~ 139 (504)
T PRK14963 78 AVRRGAHPDVLEIDAAS--NNSVEDVRDL-REKVLLAPLRGGRKVYILDEAHMMS---------------KSAFNALLKT 139 (504)
T ss_pred HHhcCCCCceEEecccc--cCCHHHHHHH-HHHHhhccccCCCeEEEEECccccC---------------HHHHHHHHHH
Confidence 112345555432 1222333332 221111 112346699999999773 1234455555
Q ss_pred HHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhc
Q 001162 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1134)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~t 773 (1134)
++.... .+++|.+++.+..+.+.+.+ |+. .+.|.+|+.++....++..+...++.++++.+..++..+
T Consensus 140 LEep~~---------~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s 207 (504)
T PRK14963 140 LEEPPE---------HVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLA 207 (504)
T ss_pred HHhCCC---------CEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 555322 36777778888899999988 765 899999999999999999999889999999999999998
Q ss_pred CCCChhhHHHHHHHHH
Q 001162 774 DGYDAYDLEILVDRTV 789 (1134)
Q Consensus 774 eG~s~~DL~~Lv~~a~ 789 (1134)
.| +.+++.+++++++
T Consensus 208 ~G-dlR~aln~Lekl~ 222 (504)
T PRK14963 208 DG-AMRDAESLLERLL 222 (504)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 87 6777777777764
No 193
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.38 E-value=1.6e-11 Score=131.45 Aligned_cols=196 Identities=21% Similarity=0.279 Sum_probs=139.9
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
...+.+|.|.+.+++.+++....++. ..+..++||+|++|||||+++|++..++...+ ..++.|.-
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~-----------G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LRlIev~k 88 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQ-----------GLPANNVLLWGARGTGKSSLVKALLNEYADQG---LRLIEVSK 88 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHc-----------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ceEEEECH
Confidence 34577899999999999999877765 45678899999999999999999999987544 45666665
Q ss_pred ccccccchhhHHHHHHHHHHHHh-hcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCC
Q 001162 630 SRLSLEKGPIIRQALSNFISEAL-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~-~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1134)
..+.. +..+++... ...+-|||+||+. + .+++ .-...|..++++-... .+.
T Consensus 89 ~~L~~---------l~~l~~~l~~~~~kFIlf~DDLs-F------e~~d-------~~yk~LKs~LeGgle~-----~P~ 140 (249)
T PF05673_consen 89 EDLGD---------LPELLDLLRDRPYKFILFCDDLS-F------EEGD-------TEYKALKSVLEGGLEA-----RPD 140 (249)
T ss_pred HHhcc---------HHHHHHHHhcCCCCEEEEecCCC-C------CCCc-------HHHHHHHHHhcCcccc-----CCC
Confidence 55432 333444433 2346799999974 2 1111 2235566666654322 234
Q ss_pred cEEEEEecCCCCCCChhhcc---------------------CCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHH
Q 001162 709 PIAFVASAQSLEKIPQSLTS---------------------SGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILL 767 (1134)
Q Consensus 709 ~V~vIattn~~~~Ld~aL~~---------------------~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~ 767 (1134)
+|++.+|+|+.+.++..+.. +.||...+.|.+|++++-.+|++.++...++.++.+.+.
T Consensus 141 NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~ 220 (249)
T PF05673_consen 141 NVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELR 220 (249)
T ss_pred cEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 79999999986544322211 139999999999999999999999999999988865433
Q ss_pred ----HHhhhcCCCChhhHHHHHHH
Q 001162 768 ----DVASKCDGYDAYDLEILVDR 787 (1134)
Q Consensus 768 ----~la~~teG~s~~DL~~Lv~~ 787 (1134)
..|....|.||+-..++++.
T Consensus 221 ~~Al~wa~~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 221 QEALQWALRRGGRSGRTARQFIDD 244 (249)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45556678888877777664
No 194
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.38 E-value=1.1e-11 Score=132.73 Aligned_cols=188 Identities=23% Similarity=0.311 Sum_probs=133.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccch
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN 916 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~ 916 (1134)
.+.++++.|++..|+.|.+.....+. | .+..++||+|+.|||||++++++..++ |+.+|++...++..
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~ 93 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQ--------G-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD 93 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHc--------C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc
Confidence 57899999999999999887764432 1 356799999999999999999999877 78999998887642
Q ss_pred hcccccHHHHHHHHHHhhh-cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccc--cccccEEEEEecCCCCcc
Q 001162 917 KYIGASEQAVRDIFSKATA-AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV--EVLTGVFVFAATSRPDLL 993 (1134)
Q Consensus 917 ~~~G~se~~v~~lf~~A~~-~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~--~~~~~v~vIatTn~p~~l 993 (1134)
+.++++..+. ..+-|||+|++. | ...+.-+..|-..|||- ...++|+|.+|+|+.+.+
T Consensus 94 ---------l~~l~~~l~~~~~kFIlf~DDLs--F--------e~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 94 ---------LPELLDLLRDRPYKFILFCDDLS--F--------EEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred ---------HHHHHHHHhcCCCCEEEEecCCC--C--------CCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 4455555442 335699999853 2 22344556777777763 345689999999986664
Q ss_pred chhhc----------C-----------cCcccceeecCCCCHHHHHHHHHHHHccCCCCCcc-cHHH----HHHhccCCc
Q 001162 994 DAALL----------R-----------PGRLDRLLFCDFPSPRERLDILKVISRKLPLADDV-DLEA----IAHMTEGFS 1047 (1134)
Q Consensus 994 d~all----------r-----------pgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~v-d~~~----La~~t~g~s 1047 (1134)
...+. . ..||+-.|.|.+|+.++.++|.+.++++.++.-+. ++.. .|..-.|.|
T Consensus 155 ~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RS 234 (249)
T PF05673_consen 155 PESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRS 234 (249)
T ss_pred chhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 32211 1 22999999999999999999999999887765331 2211 123344567
Q ss_pred HHHHHHHH
Q 001162 1048 GADLQALL 1055 (1134)
Q Consensus 1048 g~dl~~l~ 1055 (1134)
|+--+..+
T Consensus 235 GRtA~QF~ 242 (249)
T PF05673_consen 235 GRTARQFI 242 (249)
T ss_pred HHHHHHHH
Confidence 76655443
No 195
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.37 E-value=1.3e-11 Score=134.65 Aligned_cols=167 Identities=21% Similarity=0.311 Sum_probs=113.9
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhcc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIIS 669 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~ 669 (1134)
+.+++|+||+|||||++|+++++.+.... ..+++++|..+.... ..++... ..+.+|+|||+|.+..
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~---~~~~~i~~~~~~~~~--------~~~~~~~--~~~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERG---KSAIYLPLAELAQAD--------PEVLEGL--EQADLVCLDDVEAIAG 104 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcC---CcEEEEeHHHHHHhH--------HHHHhhc--ccCCEEEEeChhhhcC
Confidence 46799999999999999999999875332 467889998875322 2223222 2346999999998842
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCC---hhhccCCCc--cccccCCCCCHH
Q 001162 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIP---QSLTSSGRF--DFHVQLPAPAAS 744 (1134)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld---~aL~~~gRF--~~~i~l~~P~~e 744 (1134)
. ......+.. .++.....+ ..++++++..+..++ +.|.+ |+ ..++.+++|+.+
T Consensus 105 ~---------~~~~~~L~~----~l~~~~~~~-------~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~ 162 (226)
T TIGR03420 105 Q---------PEWQEALFH----LYNRVREAG-------GRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDE 162 (226)
T ss_pred C---------hHHHHHHHH----HHHHHHHcC-------CeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHH
Confidence 0 001123333 333322111 134444443443332 66776 55 468899999999
Q ss_pred HHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 001162 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1134)
Q Consensus 745 eR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a 792 (1134)
++..+++.++...++.++++.+..++..+. .+.+++..+++++...+
T Consensus 163 e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~-gn~r~L~~~l~~~~~~~ 209 (226)
T TIGR03420 163 EKIAALQSRAARRGLQLPDEVADYLLRHGS-RDMGSLMALLDALDRAS 209 (226)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHH
Confidence 999999998887788899999999999644 48999999998866433
No 196
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.37 E-value=6.8e-12 Score=158.07 Aligned_cols=231 Identities=17% Similarity=0.255 Sum_probs=148.0
Q ss_pred ccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccc
Q 001162 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1134)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~ 634 (1134)
+..|++..++.|++.+...... +......++|+||||+|||++++.+|+.++ ..+..++++....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~---------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~------~~~~~i~~~~~~d 387 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV---------NKIKGPILCLVGPPGVGKTSLGQSIAKATG------RKYVRMALGGVRD 387 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc---------ccCCCceEEEECCCCCCHHHHHHHHHHHhC------CCEEEEEcCCCCC
Confidence 4788999999999887643321 111234599999999999999999999987 4555566554321
Q ss_pred ---------cchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc-----cc
Q 001162 635 ---------EKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-----EK 700 (1134)
Q Consensus 635 ---------~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~-----~~ 700 (1134)
.+.+.....+...+..+....| |++|||+|++.+. ..+ + ....|++.+|.-. ..
T Consensus 388 ~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~---~~g----~----~~~aLlevld~~~~~~~~d~ 455 (784)
T PRK10787 388 EAEIRGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSD---MRG----D----PASALLEVLDPEQNVAFSDH 455 (784)
T ss_pred HHHhccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccc---cCC----C----HHHHHHHHhccccEEEEecc
Confidence 1223333344444454443334 8999999998631 111 1 1234445444211 00
Q ss_pred -cccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhh----------cccCCCHHHHHHH
Q 001162 701 -RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----------RSLECSDEILLDV 769 (1134)
Q Consensus 701 -~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~----------~~l~~~~~~l~~l 769 (1134)
-.......++++|+|+|+. .|+++|++ ||. .|.+.+|+.++..+|.+.++.. ..+.++++.+..+
T Consensus 456 ~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~i 531 (784)
T PRK10787 456 YLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGI 531 (784)
T ss_pred cccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHH
Confidence 0001123469999999988 59999999 996 8999999999999999887742 1245788888877
Q ss_pred hhh-cCCCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhh
Q 001162 770 ASK-CDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAM 820 (1134)
Q Consensus 770 a~~-teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al 820 (1134)
+.. +..+-+|.|+..+.+.+...+.+....+ ......++.+++.+-+
T Consensus 532 i~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~----~~~~v~v~~~~~~~~l 579 (784)
T PRK10787 532 IRYYTREAGVRSLEREISKLCRKAVKQLLLDK----SLKHIEINGDNLHDYL 579 (784)
T ss_pred HHhCCcccCCcHHHHHHHHHHHHHHHHHHhcC----CCceeeecHHHHHHHh
Confidence 753 3455668888888888877766543111 1122456677666544
No 197
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1e-11 Score=151.36 Aligned_cols=192 Identities=17% Similarity=0.218 Sum_probs=133.7
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc------------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~------------ 619 (1134)
+|++++|.+..+..+.+.+.. ...+..+||+||+|+|||++|+.+|+.+.....
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~--------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQ--------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 477888887777766654422 122355799999999999999999999874210
Q ss_pred -----------eeeEEEEEecccccccchhhHHHHHHHHHHHHh----hcCCeEEEEcccchhccCCCCCCCCCCchhHH
Q 001162 620 -----------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVI 684 (1134)
Q Consensus 620 -----------~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~----~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~ 684 (1134)
....++.++... ....+.+ +++++.+. .....|+||||+|.|..
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas--~~~Vd~i----Reli~~~~~~p~~g~~KV~IIDEvh~Ls~--------------- 138 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAAS--NRGVDEV----QQLLEQAVYKPVQGRFKVFMIDEVHMLTN--------------- 138 (618)
T ss_pred ccHHHHHHHcCCCCceeecCccc--ccCHHHH----HHHHHHHHhCcccCCceEEEEEChhhCCH---------------
Confidence 001233333322 1223333 33443332 12235999999999852
Q ss_pred HHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHH
Q 001162 685 ALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE 764 (1134)
Q Consensus 685 ~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~ 764 (1134)
.-.+.|+..+++... .+.+|.+|+.+..+.+.+++ |. ..++|.+++.++..+.|+..+...++.++++
T Consensus 139 ~a~NaLLKtLEEPP~---------~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~ 206 (618)
T PRK14951 139 TAFNAMLKTLEEPPE---------YLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQ 206 (618)
T ss_pred HHHHHHHHhcccCCC---------CeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 234456665655332 36777777888888888888 75 4899999999999999999998889999999
Q ss_pred HHHHHhhhcCCCChhhHHHHHHHHHHH
Q 001162 765 ILLDVASKCDGYDAYDLEILVDRTVHA 791 (1134)
Q Consensus 765 ~l~~la~~teG~s~~DL~~Lv~~a~~~ 791 (1134)
.+..|+..++| +.+++..++++++..
T Consensus 207 AL~~La~~s~G-slR~al~lLdq~ia~ 232 (618)
T PRK14951 207 ALRLLARAARG-SMRDALSLTDQAIAF 232 (618)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 99999998888 788888888776643
No 198
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=3.4e-11 Score=148.11 Aligned_cols=184 Identities=20% Similarity=0.251 Sum_probs=132.1
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCc------------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------------ 905 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~------------ 905 (1134)
+.+..|+++.|++.+++.|...+... +...++||+||+|+|||++|+++|+.++..
T Consensus 10 yRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 10 YRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred hCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 34578999999999999999887642 223479999999999999999999988642
Q ss_pred --------------EEEEeCcccchhcccccHHHHHHHHHHhhh----cCCeEEEEcCcccccCCCCCCCCcchhhHHHh
Q 001162 906 --------------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQ 967 (1134)
Q Consensus 906 --------------~i~i~~~el~~~~~G~se~~v~~lf~~A~~----~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~ 967 (1134)
++.++. ..+...+.+|++++.+.. +...|+||||+|.| .....+.
T Consensus 78 C~~C~~i~~g~h~D~~ei~~------~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-----------t~~a~na 140 (620)
T PRK14948 78 CELCRAIAAGNALDVIEIDA------ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-----------STAAFNA 140 (620)
T ss_pred cHHHHHHhcCCCccEEEEec------cccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-----------CHHHHHH
Confidence 222222 122345678888877743 33469999999998 3467889
Q ss_pred HhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCC
Q 001162 968 FLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGF 1046 (1134)
Q Consensus 968 lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~ 1046 (1134)
||+.|+ +....+++|++|+.++.+-+.+++ |+ ..+.|+.++.++....++.++++.++. ....+..+++.+.|.
T Consensus 141 LLK~LE--ePp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~ 215 (620)
T PRK14948 141 LLKTLE--EPPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGG 215 (620)
T ss_pred HHHHHh--cCCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 999998 444567777777888888899988 65 457888999988888888777765443 223366667766643
Q ss_pred cHHHHHHHHH
Q 001162 1047 SGADLQALLS 1056 (1134)
Q Consensus 1047 sg~dl~~l~~ 1056 (1134)
.+++.+++.
T Consensus 216 -lr~A~~lLe 224 (620)
T PRK14948 216 -LRDAESLLD 224 (620)
T ss_pred -HHHHHHHHH
Confidence 244333333
No 199
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=1.6e-11 Score=147.93 Aligned_cols=195 Identities=16% Similarity=0.253 Sum_probs=135.4
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCce-----------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~----------- 620 (1134)
+|.+++|.+..++.+.+.+.. ...+..+||+||+|+|||++|+.+|+.+......
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~--------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALET--------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 467888898888777665432 1223458999999999999999999988642110
Q ss_pred -------eeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001162 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1134)
Q Consensus 621 -------~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1134)
...++.++... ......++..+..+-.........|+||||+|.+.. ...+.|+..
T Consensus 80 ~~i~~~~~~dlieidaas--~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~---------------~a~naLLK~ 142 (546)
T PRK14957 80 VAINNNSFIDLIEIDAAS--RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK---------------QSFNALLKT 142 (546)
T ss_pred HHHhcCCCCceEEeeccc--ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH---------------HHHHHHHHH
Confidence 11233343321 112233333332222112223456999999999841 345567777
Q ss_pred HHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhc
Q 001162 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1134)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~t 773 (1134)
+++... .+.+|++|+.+..+.+.+++ |. ..++|.+++.++....++..+...++.+++..+..++..+
T Consensus 143 LEepp~---------~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s 210 (546)
T PRK14957 143 LEEPPE---------YVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHA 210 (546)
T ss_pred HhcCCC---------CceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 776432 36677777778888888888 76 4899999999999999999888888899999999999988
Q ss_pred CCCChhhHHHHHHHHHH
Q 001162 774 DGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 774 eG~s~~DL~~Lv~~a~~ 790 (1134)
.| +.+++.++++.++.
T Consensus 211 ~G-dlR~alnlLek~i~ 226 (546)
T PRK14957 211 KG-SLRDALSLLDQAIS 226 (546)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 76 78888888887764
No 200
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=1.7e-11 Score=149.08 Aligned_cols=195 Identities=17% Similarity=0.190 Sum_probs=137.4
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc------------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~------------ 619 (1134)
+|.++.|.+..++.+...+.. ...+..+||+||+|||||++|+++|+.+.....
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~--------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDA--------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 477888888877776665432 122344799999999999999999999874210
Q ss_pred --------eeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHH
Q 001162 620 --------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLV 691 (1134)
Q Consensus 620 --------~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~ 691 (1134)
....++.++.... ...+.++.....+..........|+||||+|.|.. ...+.|+
T Consensus 77 ~~i~~~~~~~~dvieidaas~--~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~---------------~A~NALL 139 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASH--GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT---------------AGFNALL 139 (584)
T ss_pred HHhhcccCCCceEEEeccccc--cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH---------------HHHHHHH
Confidence 1123455554332 22344444333332222223446999999999841 3455666
Q ss_pred HHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhh
Q 001162 692 DIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVAS 771 (1134)
Q Consensus 692 ~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~ 771 (1134)
..+++... .+++|.+|+.++.+.+.+++ |. .+++|.+++.++..+.+...+...++.++++.+..++.
T Consensus 140 K~LEEpp~---------~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~ 207 (584)
T PRK14952 140 KIVEEPPE---------HLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIR 207 (584)
T ss_pred HHHhcCCC---------CeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77766443 47788788888899999998 74 48999999999999999999998888899999999988
Q ss_pred hcCCCChhhHHHHHHHHHH
Q 001162 772 KCDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 772 ~teG~s~~DL~~Lv~~a~~ 790 (1134)
...| +.+++.++++.++.
T Consensus 208 ~s~G-dlR~aln~Ldql~~ 225 (584)
T PRK14952 208 AGGG-SPRDTLSVLDQLLA 225 (584)
T ss_pred HcCC-CHHHHHHHHHHHHh
Confidence 7776 78888888887653
No 201
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=1.3e-11 Score=155.27 Aligned_cols=194 Identities=16% Similarity=0.166 Sum_probs=138.6
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc------------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~------------ 619 (1134)
+|.+|+|.+..++.|...+.. ...+..+||+||+|||||++|+.+|+.|.....
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~--------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDS--------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHh--------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 477888888877776665432 122344899999999999999999999964211
Q ss_pred --------eeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHH
Q 001162 620 --------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLV 691 (1134)
Q Consensus 620 --------~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~ 691 (1134)
....++.++.... ...+.++.....++.........|+||||+|.|.. .-.+.|+
T Consensus 79 ~~~~~g~~~~~dv~eidaas~--~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~---------------~a~NaLL 141 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASH--GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP---------------QGFNALL 141 (824)
T ss_pred HHHHcCCCCCCcEEEeccccc--CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH---------------HHHHHHH
Confidence 1123444444321 23444554433333323334556999999999951 3455677
Q ss_pred HHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhh
Q 001162 692 DIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVAS 771 (1134)
Q Consensus 692 ~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~ 771 (1134)
+.+++... .++||++|+..+.|.+.+++ |.. ++.|..++.++..++|+..+...++.++++.+..++.
T Consensus 142 K~LEEpP~---------~~~fIl~tt~~~kLl~TIrS--Rc~-~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~ 209 (824)
T PRK07764 142 KIVEEPPE---------HLKFIFATTEPDKVIGTIRS--RTH-HYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIR 209 (824)
T ss_pred HHHhCCCC---------CeEEEEEeCChhhhhHHHHh--hee-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77776543 37777778888888889998 654 8899999999999999999988889999999999998
Q ss_pred hcCCCChhhHHHHHHHHH
Q 001162 772 KCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 772 ~teG~s~~DL~~Lv~~a~ 789 (1134)
.+.| +.+++..++++.+
T Consensus 210 ~sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 210 AGGG-SVRDSLSVLDQLL 226 (824)
T ss_pred HcCC-CHHHHHHHHHHHH
Confidence 8877 7788888888765
No 202
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=1.7e-11 Score=147.48 Aligned_cols=194 Identities=20% Similarity=0.244 Sum_probs=134.4
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCce-----------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~----------- 620 (1134)
.|.++.|.+..++.+.+.+.. ...+.++||+||+|+|||++|+++|+.+......
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~--------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILN--------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 467888888887776664422 2234569999999999999999999998632110
Q ss_pred -------eeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001162 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1134)
Q Consensus 621 -------~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1134)
...++.++++. ....+.++..+..+-.........|++|||+|.|.. ...+.|+..
T Consensus 80 r~i~~~~h~DiieIdaas--~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~---------------~A~NaLLKt 142 (605)
T PRK05896 80 ESINTNQSVDIVELDAAS--NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST---------------SAWNALLKT 142 (605)
T ss_pred HHHHcCCCCceEEecccc--ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH---------------HHHHHHHHH
Confidence 01234444322 122333333322221111112345999999998841 234566666
Q ss_pred HHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhc
Q 001162 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1134)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~t 773 (1134)
++.... .+++|++|+.++.+.+.+++ |+. .+.|++|+.++....++..+...++.++++.+..++..+
T Consensus 143 LEEPp~---------~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS 210 (605)
T PRK05896 143 LEEPPK---------HVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLA 210 (605)
T ss_pred HHhCCC---------cEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 666432 36777777888999999998 765 899999999999999999988888889999999999988
Q ss_pred CCCChhhHHHHHHHHH
Q 001162 774 DGYDAYDLEILVDRTV 789 (1134)
Q Consensus 774 eG~s~~DL~~Lv~~a~ 789 (1134)
.| +.+++..+++.+.
T Consensus 211 ~G-dlR~AlnlLekL~ 225 (605)
T PRK05896 211 DG-SLRDGLSILDQLS 225 (605)
T ss_pred CC-cHHHHHHHHHHHH
Confidence 87 6777777777654
No 203
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=1.4e-11 Score=150.54 Aligned_cols=191 Identities=18% Similarity=0.252 Sum_probs=135.6
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc------------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~------------ 619 (1134)
+|.++.|.+...+.+.+.+.. ...+..+||+||+|||||++|+.+|+.+.....
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~--------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQ--------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 477888988877777665532 122355899999999999999999999863221
Q ss_pred ------eeeEEEEEecccccccchhhHHHHHHHHHHHHh----hcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHH
Q 001162 620 ------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKF 689 (1134)
Q Consensus 620 ------~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~----~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~ 689 (1134)
....++.++.+. ...... ++++.+.+. .....|+||||+|.|.. ...+.
T Consensus 80 ~~i~~g~~~dv~eidaas--~~~vd~----ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~---------------~a~na 138 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS--NNGVDE----IRDIRDKVKYAPSEAKYKVYIIDEVHMLST---------------GAFNA 138 (559)
T ss_pred HHHhcCCCCCeEEeeccc--cCCHHH----HHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HHHHH
Confidence 112344454432 122223 344444433 22345999999998841 23445
Q ss_pred HHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHH
Q 001162 690 LVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDV 769 (1134)
Q Consensus 690 L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~l 769 (1134)
|+..+++... .+++|.+|+.++.+++.+++ |+. .+.|++|+.++....++..+.+.++.++++.+..+
T Consensus 139 LLKtLEepp~---------~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~i 206 (559)
T PRK05563 139 LLKTLEEPPA---------HVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLI 206 (559)
T ss_pred HHHHhcCCCC---------CeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5555555322 36777777788999999988 765 78899999999999999999988999999999999
Q ss_pred hhhcCCCChhhHHHHHHHHHH
Q 001162 770 ASKCDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 770 a~~teG~s~~DL~~Lv~~a~~ 790 (1134)
+..++| +.+++..+++.++.
T Consensus 207 a~~s~G-~~R~al~~Ldq~~~ 226 (559)
T PRK05563 207 ARAAEG-GMRDALSILDQAIS 226 (559)
T ss_pred HHHcCC-CHHHHHHHHHHHHH
Confidence 998887 78888888887654
No 204
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.35 E-value=1.7e-11 Score=145.64 Aligned_cols=160 Identities=21% Similarity=0.324 Sum_probs=111.0
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccC
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1134)
.++||+||||||||++|+++++.+. ..+..+++... ....++..+.............||||||+|.+..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~------~~~~~l~a~~~---~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~- 106 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATD------APFEALSAVTS---GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK- 106 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC------CCEEEEecccc---cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH-
Confidence 4799999999999999999999876 55666766532 1223333333322222223567999999999841
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecC--CCCCCChhhccCCCccccccCCCCCHHHHHH
Q 001162 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQ--SLEKIPQSLTSSGRFDFHVQLPAPAASERKA 748 (1134)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn--~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~ 748 (1134)
...+.|...++. +.+++|++++ ....+++++++ |+ ..+.|++++.++...
T Consensus 107 --------------~~q~~LL~~le~-----------~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~ 158 (413)
T PRK13342 107 --------------AQQDALLPHVED-----------GTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQ 158 (413)
T ss_pred --------------HHHHHHHHHhhc-----------CcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHH
Confidence 122344444432 1366676653 34578899999 77 588999999999999
Q ss_pred HHHHHhhhc--cc-CCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 749 ILEHEIQRR--SL-ECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 749 IL~~~l~~~--~l-~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
+++..+... ++ .++++.+..++..+.| +++.+.++++.++
T Consensus 159 lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 159 LLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 999877642 34 7888899999998865 6777777777665
No 205
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.35 E-value=9.1e-12 Score=147.93 Aligned_cols=196 Identities=16% Similarity=0.238 Sum_probs=130.0
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccC
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1134)
.+++||||+|+|||+|++++++++.... ..+.++++..+.......+...-...|.... ....+|+|||++.+.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~---~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k 217 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESG---GKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGK 217 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcC---CCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCC
Confidence 5699999999999999999999885432 5677888776543322222211112233322 45679999999988531
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCC---CCChhhccCCCcc--ccccCCCCCHHH
Q 001162 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFD--FHVQLPAPAASE 745 (1134)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~---~Ld~aL~~~gRF~--~~i~l~~P~~ee 745 (1134)
. .....+...+..+.+. . ..+++++...+. .++++|++ ||. ..+.+++|+.++
T Consensus 218 ~---------~~qeelf~l~N~l~~~----~-------k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~ 275 (445)
T PRK12422 218 G---------ATQEEFFHTFNSLHTE----G-------KLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEG 275 (445)
T ss_pred h---------hhHHHHHHHHHHHHHC----C-------CcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHH
Confidence 1 1122344443333321 1 234555544443 46788898 885 688999999999
Q ss_pred HHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHH-HhcccccCCCccccccccccchhhhHhhhhcc
Q 001162 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHA-AVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1134)
Q Consensus 746 R~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~-a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1134)
|.+||+..+...++.++++++..++....+ +.+.|...+.+.+.. +..+. ....++.++...++.++
T Consensus 276 r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~----------~~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 276 LRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKL----------SHQLLYVDDIKALLHDV 343 (445)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHh----------hCCCCCHHHHHHHHHHh
Confidence 999999999988899999999999997776 677788777776532 22221 11347777777777654
No 206
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.35 E-value=2.3e-11 Score=139.64 Aligned_cols=175 Identities=21% Similarity=0.326 Sum_probs=121.7
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~ 631 (1134)
++.++.|.+...+.+...+.. ...|..+||+||||+|||++++++++.++ ..+.+++|+.
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~lll~G~~G~GKT~la~~l~~~~~------~~~~~i~~~~ 78 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKK--------------GRIPNMLLHSPSPGTGKTTVAKALCNEVG------AEVLFVNGSD 78 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhc--------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhC------ccceEeccCc
Confidence 567888888887777665531 22345577799999999999999999875 5677888877
Q ss_pred ccccchhhHHHHHHHHHHHHhh-cCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcE
Q 001162 632 LSLEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1134)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a~~-~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1134)
+. ...++..+..+...... ..+.+|+|||+|.+.. . .....|...++.... .+
T Consensus 79 --~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----------~----~~~~~L~~~le~~~~---------~~ 132 (316)
T PHA02544 79 --CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----------A----DAQRHLRSFMEAYSK---------NC 132 (316)
T ss_pred --cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC----------H----HHHHHHHHHHHhcCC---------Cc
Confidence 22 33333434333332221 3567999999998721 0 123344555555432 36
Q ss_pred EEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhh-------hcccCCCHHHHHHHhhhcCC
Q 001162 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ-------RRSLECSDEILLDVASKCDG 775 (1134)
Q Consensus 711 ~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~-------~~~l~~~~~~l~~la~~teG 775 (1134)
.+|+++|....+++.+++ ||. .+.++.|+.+++.++++.++. ..+..++++.+..++....|
T Consensus 133 ~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~ 201 (316)
T PHA02544 133 SFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP 201 (316)
T ss_pred eEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Confidence 788899998999999999 885 789999999999888765432 34677888888888876665
No 207
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.34 E-value=2.2e-11 Score=142.07 Aligned_cols=191 Identities=19% Similarity=0.265 Sum_probs=131.3
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCce-----------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~----------- 620 (1134)
.+.++.|.+..++.+.+.+.. ...+..+|||||||+|||++++++++.+......
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~--------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c 77 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKN--------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESC 77 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 466788888888877765532 2234568999999999999999999998532110
Q ss_pred -------eeEEEEEecccccccchhhHHHHHHHHHHHHhh----cCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHH
Q 001162 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALD----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKF 689 (1134)
Q Consensus 621 -------~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~----~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~ 689 (1134)
...++.++... .... ..++++++.+.. ....|++|||+|.+.. ...+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~--~~~~----~~~~~l~~~~~~~p~~~~~~vviidea~~l~~---------------~~~~~ 136 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAAS--NNGV----DDIREILDNVKYAPSSGKYKVYIIDEVHMLSK---------------SAFNA 136 (355)
T ss_pred HHHhcCCCCCEEEeeccc--cCCH----HHHHHHHHHHhcCcccCCceEEEEeChhhcCH---------------HHHHH
Confidence 11233343321 1111 224445544432 2345999999998841 22334
Q ss_pred HHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHH
Q 001162 690 LVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDV 769 (1134)
Q Consensus 690 L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~l 769 (1134)
|+..++.... .+++|.+++.++.+.+.+++ |+. .++|++|+.+++.+++...+...++.++++.+..+
T Consensus 137 Ll~~le~~~~---------~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l 204 (355)
T TIGR02397 137 LLKTLEEPPE---------HVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELI 204 (355)
T ss_pred HHHHHhCCcc---------ceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5555544321 36777777888888888888 764 78999999999999999999988889999999999
Q ss_pred hhhcCCCChhhHHHHHHHHHH
Q 001162 770 ASKCDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 770 a~~teG~s~~DL~~Lv~~a~~ 790 (1134)
+..+.| +++.+.+.++++..
T Consensus 205 ~~~~~g-~~~~a~~~lekl~~ 224 (355)
T TIGR02397 205 ARAADG-SLRDALSLLDQLIS 224 (355)
T ss_pred HHHcCC-ChHHHHHHHHHHHh
Confidence 998877 66777676666543
No 208
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.34 E-value=2.6e-11 Score=140.41 Aligned_cols=191 Identities=18% Similarity=0.269 Sum_probs=123.7
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~ 631 (1134)
++.++.|.+..++.+...+.. ....++||+||||||||++|+++++++.... ....+.+++|++
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~---------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-~~~~~~~i~~~~ 76 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDS---------------PNLPHLLVQGPPGSGKTAAVRALARELYGDP-WENNFTEFNVAD 76 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhC---------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcc-cccceEEechhh
Confidence 356777777766665543321 1123699999999999999999999986332 113467778776
Q ss_pred ccccchh--------------------hHHHHHHHHHHHHhh-----cCCeEEEEcccchhccCCCCCCCCCCchhHHHH
Q 001162 632 LSLEKGP--------------------IIRQALSNFISEALD-----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIAL 686 (1134)
Q Consensus 632 l~~~~~~--------------------~~~~~l~~~f~~a~~-----~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l 686 (1134)
+...... .....++.+...... ..+.+|+|||+|.+.. ..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~---------------~~ 141 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE---------------DA 141 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH---------------HH
Confidence 5321100 011223333333222 2346999999998731 22
Q ss_pred HHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHH
Q 001162 687 TKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEIL 766 (1134)
Q Consensus 687 ~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l 766 (1134)
.+.|...++.... ...+|.+++.+..+.+.|++ |+ ..+.+++|+.+++.++++..+...++.++++.+
T Consensus 142 ~~~L~~~le~~~~---------~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al 209 (337)
T PRK12402 142 QQALRRIMEQYSR---------TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGL 209 (337)
T ss_pred HHHHHHHHHhccC---------CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 3345555555432 13455566566677778887 65 378999999999999999999988999999999
Q ss_pred HHHhhhcCCCChhhHHHHHH
Q 001162 767 LDVASKCDGYDAYDLEILVD 786 (1134)
Q Consensus 767 ~~la~~teG~s~~DL~~Lv~ 786 (1134)
..++..+.| +.+.+...++
T Consensus 210 ~~l~~~~~g-dlr~l~~~l~ 228 (337)
T PRK12402 210 ELIAYYAGG-DLRKAILTLQ 228 (337)
T ss_pred HHHHHHcCC-CHHHHHHHHH
Confidence 999998854 4555444444
No 209
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=2e-11 Score=149.68 Aligned_cols=190 Identities=18% Similarity=0.251 Sum_probs=133.3
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCce-----------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~----------- 620 (1134)
.|.++.|.+..+..+.+.+.. ...+..+||+||+|+|||++|+++|+.+......
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~--------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKS--------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 577888888887777665532 1223558999999999999999999998642210
Q ss_pred ----eeEEEEEecccccccchhhHHHHHHHHHHHHh----hcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHH
Q 001162 621 ----VAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (1134)
Q Consensus 621 ----~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~----~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~ 692 (1134)
...++.++... ...... ++++.+.+. .....|++|||+|.|.. ...+.|+.
T Consensus 82 ~~~~~~Dvieidaas--n~~vd~----IReLie~~~~~P~~g~~KV~IIDEa~~LT~---------------~A~NALLK 140 (725)
T PRK07133 82 NVNNSLDIIEMDAAS--NNGVDE----IRELIENVKNLPTQSKYKIYIIDEVHMLSK---------------SAFNALLK 140 (725)
T ss_pred hhcCCCcEEEEeccc--cCCHHH----HHHHHHHHHhchhcCCCEEEEEEChhhCCH---------------HHHHHHHH
Confidence 00112222111 111222 344443332 23446999999999842 23455666
Q ss_pred HHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhh
Q 001162 693 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 772 (1134)
Q Consensus 693 ~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~ 772 (1134)
.+++... .+++|.+|+.++.+.+.+++ |+. ++.|.+++.++..+.|...+...++.++++.+..++..
T Consensus 141 tLEEPP~---------~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~l 208 (725)
T PRK07133 141 TLEEPPK---------HVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKL 208 (725)
T ss_pred HhhcCCC---------ceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 6666432 37778788888999999998 775 89999999999999999988888888999999999998
Q ss_pred cCCCChhhHHHHHHHHH
Q 001162 773 CDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 773 teG~s~~DL~~Lv~~a~ 789 (1134)
+.| +.+++..+++.+.
T Consensus 209 S~G-slR~AlslLekl~ 224 (725)
T PRK07133 209 SSG-SLRDALSIAEQVS 224 (725)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 887 6777777777654
No 210
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=2.7e-11 Score=145.11 Aligned_cols=193 Identities=18% Similarity=0.187 Sum_probs=136.0
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCce-----------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~----------- 620 (1134)
+|.+++|.+...+.+...+.. ...+..+|||||+|+|||++|+++++.+......
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~--------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDN--------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHc--------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 477888888887776665422 1234557999999999999999999998532211
Q ss_pred -------eeEEEEEecccccccchhhHHHHHHHHHHHHhh----cCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHH
Q 001162 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALD----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKF 689 (1134)
Q Consensus 621 -------~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~----~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~ 689 (1134)
...++.++.+. ...... +++....... ....|++|||+|.+.. ...+.
T Consensus 78 ~~~~~~~h~dv~eldaas--~~gId~----IRelie~~~~~P~~~~~KVvIIDEad~Lt~---------------~A~NA 136 (535)
T PRK08451 78 QSALENRHIDIIEMDAAS--NRGIDD----IRELIEQTKYKPSMARFKIFIIDEVHMLTK---------------EAFNA 136 (535)
T ss_pred HHHhhcCCCeEEEecccc--ccCHHH----HHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HHHHH
Confidence 01233333221 112233 4444433221 2235999999999841 34556
Q ss_pred HHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHH
Q 001162 690 LVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDV 769 (1134)
Q Consensus 690 L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~l 769 (1134)
|+..++.... .+.+|.+|+.+..+.+.+++ |. .+++|.+++.++..+.++..+...++.++++.+..+
T Consensus 137 LLK~LEEpp~---------~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~I 204 (535)
T PRK08451 137 LLKTLEEPPS---------YVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEIL 204 (535)
T ss_pred HHHHHhhcCC---------ceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 6777776532 36677777778899999999 74 489999999999999999999888999999999999
Q ss_pred hhhcCCCChhhHHHHHHHHHHHH
Q 001162 770 ASKCDGYDAYDLEILVDRTVHAA 792 (1134)
Q Consensus 770 a~~teG~s~~DL~~Lv~~a~~~a 792 (1134)
+..+.| +.+++..++++++..+
T Consensus 205 a~~s~G-dlR~alnlLdqai~~~ 226 (535)
T PRK08451 205 ARSGNG-SLRDTLTLLDQAIIYC 226 (535)
T ss_pred HHHcCC-cHHHHHHHHHHHHHhc
Confidence 998887 8888888888877543
No 211
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=2.2e-11 Score=147.84 Aligned_cols=192 Identities=19% Similarity=0.263 Sum_probs=134.3
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCce-----------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~----------- 620 (1134)
+|.+++|.+..+..+.+.+.. ...+..+||+||+|+|||++|+.+|+.+......
T Consensus 14 ~f~divGq~~v~~~L~~~i~~--------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQ--------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHc--------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 477888888877766654422 1223557999999999999999999998642110
Q ss_pred -------eeEEEEEecccccccchhhHHHHHHHHHHHHh----hcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHH
Q 001162 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKF 689 (1134)
Q Consensus 621 -------~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~----~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~ 689 (1134)
...++.++.+. ...... ++++++.+. .....|+||||+|.+.. ...+.
T Consensus 80 ~~i~~~~~~d~~ei~~~~--~~~vd~----ir~l~~~~~~~p~~~~~kVvIIDEad~ls~---------------~a~na 138 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS--NTQVDA----MRELLDNAQYAPTRGRFKVYIIDEVHMLSK---------------SAFNA 138 (527)
T ss_pred HHHhcCCCCceeEeeccc--cCCHHH----HHHHHHHHhhCcccCCceEEEEcCcccCCH---------------HHHHH
Confidence 01233444322 122233 344444432 12346999999998841 23445
Q ss_pred HHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHH
Q 001162 690 LVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDV 769 (1134)
Q Consensus 690 L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~l 769 (1134)
|+..+++... .+.+|.+|+.++.+.+.+++ |. ..++|++++.++..+.+...+...++.++++.+..+
T Consensus 139 LLK~LEepp~---------~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~l 206 (527)
T PRK14969 139 MLKTLEEPPE---------HVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLL 206 (527)
T ss_pred HHHHHhCCCC---------CEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 6666665432 37777778888888888888 75 489999999999999999988888888899999999
Q ss_pred hhhcCCCChhhHHHHHHHHHHH
Q 001162 770 ASKCDGYDAYDLEILVDRTVHA 791 (1134)
Q Consensus 770 a~~teG~s~~DL~~Lv~~a~~~ 791 (1134)
+..+.| +.+++..+++.++..
T Consensus 207 a~~s~G-slr~al~lldqai~~ 227 (527)
T PRK14969 207 ARAAAG-SMRDALSLLDQAIAY 227 (527)
T ss_pred HHHcCC-CHHHHHHHHHHHHHh
Confidence 998877 788888888887643
No 212
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=2.5e-11 Score=148.35 Aligned_cols=191 Identities=21% Similarity=0.192 Sum_probs=134.3
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEe-------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVK------- 910 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~------- 910 (1134)
+.+..|++|.|++.+++.|...+... +.+.++||+||+|+|||++|+++|+.++......+
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 45678999999999999999987632 34457999999999999999999998864321111
Q ss_pred ------C--------cccchhc--ccccHHHHHHHHHHhhh----cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhh
Q 001162 911 ------G--------PELLNKY--IGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLT 970 (1134)
Q Consensus 911 ------~--------~el~~~~--~G~se~~v~~lf~~A~~----~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~ 970 (1134)
| ++++... ....-..+|++++.++. +...|++|||+|.| .....|.|++
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~L-----------s~~a~naLLK 154 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHML-----------STAAFNALLK 154 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhC-----------CHHHHHHHHH
Confidence 0 1111000 00123567888777643 23579999999998 3456889999
Q ss_pred hcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHH
Q 001162 971 ELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGA 1049 (1134)
Q Consensus 971 ~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~ 1049 (1134)
.|+ +....++||.+|+.++.+.+.+++ |+ ..+.|..++.++....++..+++.++. ++..++.|+..+.| +.+
T Consensus 155 tLE--ePp~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr 228 (598)
T PRK09111 155 TLE--EPPPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVR 228 (598)
T ss_pred HHH--hCCCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 887 344556666677888888888888 66 478999999999999999988876654 23345666776664 555
Q ss_pred HHHHHHHH
Q 001162 1050 DLQALLSD 1057 (1134)
Q Consensus 1050 dl~~l~~~ 1057 (1134)
++.+++..
T Consensus 229 ~al~~Ldk 236 (598)
T PRK09111 229 DGLSLLDQ 236 (598)
T ss_pred HHHHHHHH
Confidence 65555543
No 213
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=6.7e-11 Score=144.78 Aligned_cols=174 Identities=19% Similarity=0.234 Sum_probs=123.5
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCc------------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------------ 905 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~------------ 905 (1134)
+.+..|++++|++.+++.|+..+... +.+.++||+||+|||||++|+++|+.+...
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 34578999999999999998876531 334469999999999999999999988652
Q ss_pred --------------------EEEEeCcccchhcccccHHHHHHHHHHhh----hcCCeEEEEcCcccccCCCCCCCCcch
Q 001162 906 --------------------FISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVT 961 (1134)
Q Consensus 906 --------------------~i~i~~~el~~~~~G~se~~v~~lf~~A~----~~~P~VLfiDEid~l~~~r~~~~~~~~ 961 (1134)
++.+++.. ....+.++++.+.+. .+...|++|||+|.+.
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s------~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt----------- 140 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS----------- 140 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC-----------
Confidence 12222111 012356777766652 2334699999999983
Q ss_pred hhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHH
Q 001162 962 DRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIA 1040 (1134)
Q Consensus 962 ~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La 1040 (1134)
....+.|+..|+. ....+++|.+|+.++.+-+.+.+ |+ ..+.|..++.++....++.++++.++. ++..++.|+
T Consensus 141 ~~a~naLLK~LEe--Pp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La 215 (620)
T PRK14954 141 TAAFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIA 215 (620)
T ss_pred HHHHHHHHHHHhC--CCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3457889988873 33455555566777888888888 44 578999999999998888888766542 334466677
Q ss_pred HhccC
Q 001162 1041 HMTEG 1045 (1134)
Q Consensus 1041 ~~t~g 1045 (1134)
..+.|
T Consensus 216 ~~s~G 220 (620)
T PRK14954 216 RKAQG 220 (620)
T ss_pred HHhCC
Confidence 66653
No 214
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.33 E-value=4.1e-11 Score=140.62 Aligned_cols=232 Identities=19% Similarity=0.157 Sum_probs=139.5
Q ss_pred cccchhhHHHHHHHHHHh-cCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccc
Q 001162 556 LSWMGTTASDVINRIKVL-LSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1134)
Q Consensus 556 l~G~~~~~~~i~~~l~~l-l~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~ 634 (1134)
++|.+.+++.+...+..- .+.........-...+..++||+||||||||++|+++|+.++ .+++.++|..+..
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~------~pf~~id~~~l~~ 146 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD------VPFAIADATTLTE 146 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC------CCceecchhhccc
Confidence 677888777765544221 110000000000112346799999999999999999999986 7788889887653
Q ss_pred -cchh-hHHHHHHHHHHHH----hhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----cccccc
Q 001162 635 -EKGP-IIRQALSNFISEA----LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSS 704 (1134)
Q Consensus 635 -~~~~-~~~~~l~~~f~~a----~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~ 704 (1134)
.+.+ .....+..++..+ ....++||||||+|.+...+..... ...-....+.+.|+.+|++-. ......
T Consensus 147 ~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~-~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~ 225 (412)
T PRK05342 147 AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSI-TRDVSGEGVQQALLKILEGTVASVPPQGGRK 225 (412)
T ss_pred CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCc-CCCcccHHHHHHHHHHHhcCeEEeCCCCCcC
Confidence 2333 2344444444332 2346789999999999754211111 011111245667777776421 111111
Q ss_pred cCCCcEEEEEecCCCC------------------------------------------C----------CChhhccCCCc
Q 001162 705 CGIGPIAFVASAQSLE------------------------------------------K----------IPQSLTSSGRF 732 (1134)
Q Consensus 705 ~~~~~V~vIattn~~~------------------------------------------~----------Ld~aL~~~gRF 732 (1134)
....+.++|.|+|-.. . +.|.|. ||+
T Consensus 226 ~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRl 303 (412)
T PRK05342 226 HPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRL 303 (412)
T ss_pred cCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCC
Confidence 1112344444444300 0 123333 499
Q ss_pred cccccCCCCCHHHHHHHHHH----Hh-------hhcc--cCCCHHHHHHHhhh--cCCCChhhHHHHHHHHHHHHhccc
Q 001162 733 DFHVQLPAPAASERKAILEH----EI-------QRRS--LECSDEILLDVASK--CDGYDAYDLEILVDRTVHAAVGRY 796 (1134)
Q Consensus 733 ~~~i~l~~P~~eeR~~IL~~----~l-------~~~~--l~~~~~~l~~la~~--teG~s~~DL~~Lv~~a~~~a~~r~ 796 (1134)
+.++.|.+.+.+++.+|+.. ++ ..++ +.++++++..|+.. ..++-+|.|+.++++.+...+.+.
T Consensus 304 d~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~ 382 (412)
T PRK05342 304 PVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFEL 382 (412)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhc
Confidence 99999999999999999972 22 2223 45889999999986 467778999999999888777664
No 215
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=2.8e-11 Score=148.54 Aligned_cols=191 Identities=19% Similarity=0.211 Sum_probs=136.8
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCce-----------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~----------- 620 (1134)
+|.+++|.+...+.+.+.+.. ...+..+|||||+|+|||++|+.+|+.+......
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~--------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDT--------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 477889998887777665532 1234558999999999999999999998643210
Q ss_pred -------eeEEEEEecccccccchhhHHHHHHHHHHHHh----hcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHH
Q 001162 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKF 689 (1134)
Q Consensus 621 -------~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~----~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~ 689 (1134)
...+++++...- ...+. ++++.+.+. .....|+||||+|.|.. ...+.
T Consensus 80 ~~i~~g~~~d~~eid~~s~--~~v~~----ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~---------------~a~na 138 (576)
T PRK14965 80 VEITEGRSVDVFEIDGASN--TGVDD----IRELRENVKYLPSRSRYKIFIIDEVHMLST---------------NAFNA 138 (576)
T ss_pred HHHhcCCCCCeeeeeccCc--cCHHH----HHHHHHHHHhccccCCceEEEEEChhhCCH---------------HHHHH
Confidence 122344443221 12223 334443332 12235999999998841 33556
Q ss_pred HHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHH
Q 001162 690 LVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDV 769 (1134)
Q Consensus 690 L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~l 769 (1134)
|+..+++... .+++|.+|+.++.|.+.+++ |+. .+.|.+++.++....+...+...++.++++.+..+
T Consensus 139 LLk~LEepp~---------~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~l 206 (576)
T PRK14965 139 LLKTLEEPPP---------HVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALV 206 (576)
T ss_pred HHHHHHcCCC---------CeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 7777776443 37788888888999999998 764 88999999999999999999888999999999999
Q ss_pred hhhcCCCChhhHHHHHHHHHH
Q 001162 770 ASKCDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 770 a~~teG~s~~DL~~Lv~~a~~ 790 (1134)
+..++| +.+++..+++.++.
T Consensus 207 a~~a~G-~lr~al~~Ldqlia 226 (576)
T PRK14965 207 ARKGDG-SMRDSLSTLDQVLA 226 (576)
T ss_pred HHHcCC-CHHHHHHHHHHHHH
Confidence 999888 67788888877654
No 216
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.33 E-value=3.5e-11 Score=131.18 Aligned_cols=197 Identities=21% Similarity=0.254 Sum_probs=124.1
Q ss_pred CChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhcccccH
Q 001162 847 GGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASE 923 (1134)
Q Consensus 847 ~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~~G~se 923 (1134)
++...+.+.++..+.. ....+++|+||+|||||++|+++++.+ +.+++.+++.++....
T Consensus 20 ~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~----- 81 (226)
T TIGR03420 20 GGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD----- 81 (226)
T ss_pred CCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH-----
Confidence 3566677777766431 234589999999999999999999876 4788899988765322
Q ss_pred HHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCcc---chhhcCc
Q 001162 924 QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL---DAALLRP 1000 (1134)
Q Consensus 924 ~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~l---d~allrp 1000 (1134)
.+++..... +.+|+|||+|.+.... .....+...++.....+..+|++++..+..+ ++.+.+
T Consensus 82 ---~~~~~~~~~--~~lLvIDdi~~l~~~~---------~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~- 146 (226)
T TIGR03420 82 ---PEVLEGLEQ--ADLVCLDDVEAIAGQP---------EWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT- 146 (226)
T ss_pred ---HHHHhhccc--CCEEEEeChhhhcCCh---------HHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH-
Confidence 233333322 3599999999984320 0122333333332233345555544445443 267777
Q ss_pred Ccc--cceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 001162 1001 GRL--DRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGK 1077 (1134)
Q Consensus 1001 gRf--d~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~ 1077 (1134)
|+ ...+.+|+|+.+++..+++.++.+.++. ++..+..|+.. -+-+.+++.+++..+...+... +
T Consensus 147 -r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~~-----------~ 213 (226)
T TIGR03420 147 -RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLAA-----------K 213 (226)
T ss_pred -HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHh-----------C
Confidence 55 4788999999999999999877655543 22335666664 3356777777777655332221 1
Q ss_pred cccccHHHHHHHH
Q 001162 1078 MPVITDALLKSIA 1090 (1134)
Q Consensus 1078 ~~~it~e~l~~al 1090 (1134)
..||.+.+.+.+
T Consensus 214 -~~i~~~~~~~~~ 225 (226)
T TIGR03420 214 -RKITIPFVKEVL 225 (226)
T ss_pred -CCCCHHHHHHHh
Confidence 258877777665
No 217
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.32 E-value=2.3e-11 Score=151.42 Aligned_cols=161 Identities=20% Similarity=0.316 Sum_probs=111.2
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHH-hhcCCeEEEEcccchhcc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEA-LDHAPSIVIFDNLDSIIS 669 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a-~~~~PsIL~IDEiD~L~~ 669 (1134)
.++|||||||||||++|+++++.+. .+++.++|... ....++..+....... ......+|||||+|.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~------~~f~~lna~~~---~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTR------AHFSSLNAVLA---GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc------Ccceeehhhhh---hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence 4699999999999999999999876 55666776532 1122222222221111 123457999999999841
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCC--CCCCChhhccCCCccccccCCCCCHHHHH
Q 001162 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS--LEKIPQSLTSSGRFDFHVQLPAPAASERK 747 (1134)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~--~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~ 747 (1134)
...+.|...++. +.+++|++|+. ...+++++.+ |. ..+.|++++.+++.
T Consensus 124 ---------------~qQdaLL~~lE~-----------g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~ 174 (725)
T PRK13341 124 ---------------AQQDALLPWVEN-----------GTITLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLH 174 (725)
T ss_pred ---------------HHHHHHHHHhcC-----------ceEEEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHH
Confidence 112334443332 13677776543 3457889988 64 37899999999999
Q ss_pred HHHHHHhh-------hcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHH
Q 001162 748 AILEHEIQ-------RRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 748 ~IL~~~l~-------~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~ 790 (1134)
.|++..+. ..++.++++.+..|+..+.| +.+.+.++++.++.
T Consensus 175 ~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~~ 223 (725)
T PRK13341 175 QLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAVE 223 (725)
T ss_pred HHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 99998886 34577899999999998865 78888888887764
No 218
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=3.8e-11 Score=145.35 Aligned_cols=192 Identities=17% Similarity=0.222 Sum_probs=131.3
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc------------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~------------ 619 (1134)
+|.+++|.+..++.+.+.+.. ...+.++||+||+|+|||++|+.+|+.+.....
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~--------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQE--------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 467788887776655554421 122356999999999999999999999864210
Q ss_pred ------eeeEEEEEecccccccchhhHHHHHHHHHHHH-hhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHH
Q 001162 620 ------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEA-LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (1134)
Q Consensus 620 ------~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a-~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~ 692 (1134)
....++.++... ....+.++. +.+.+... ......|+||||+|.|.. ...+.|+.
T Consensus 80 ~~i~~g~hpDv~eId~a~--~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~---------------~a~naLLk 141 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGAS--NRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTR---------------EAFNALLK 141 (624)
T ss_pred HHHhcCCCCceEEEeccc--ccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCH---------------HHHHHHHH
Confidence 011244444322 122333333 33333322 223456999999999841 23455666
Q ss_pred HHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhh
Q 001162 693 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 772 (1134)
Q Consensus 693 ~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~ 772 (1134)
.+++... .+++|++|+.++.+.+.+++ |+. +++|++++.++...+|+..+...++.++++.+..++..
T Consensus 142 ~LEEP~~---------~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~ 209 (624)
T PRK14959 142 TLEEPPA---------RVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARR 209 (624)
T ss_pred HhhccCC---------CEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 6665332 37888888888888888888 765 78999999999999999988888888999999999998
Q ss_pred cCCCChhhHHHHHHHH
Q 001162 773 CDGYDAYDLEILVDRT 788 (1134)
Q Consensus 773 teG~s~~DL~~Lv~~a 788 (1134)
+.| +.+++..+++++
T Consensus 210 s~G-dlR~Al~lLeql 224 (624)
T PRK14959 210 AAG-SVRDSMSLLGQV 224 (624)
T ss_pred cCC-CHHHHHHHHHHH
Confidence 887 566666666654
No 219
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=5e-11 Score=139.72 Aligned_cols=191 Identities=21% Similarity=0.268 Sum_probs=129.7
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCC------ceeeEEE
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK------DLVAHIV 625 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~------~~~~~~~ 625 (1134)
++++++|.+..++.+.+.+.. ...+.++|||||||+|||++++++++.+.... .....++
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~--------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIEN--------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 467888888887777665532 22346799999999999999999999986421 0112222
Q ss_pred EEecccccccchhhHHHHHHHHHHHHh----hcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc
Q 001162 626 FVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR 701 (1134)
Q Consensus 626 ~v~~s~l~~~~~~~~~~~l~~~f~~a~----~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~ 701 (1134)
.++.. ..... ..++.+++.+. ...+.|++|||+|.+.. ...+.|...++....
T Consensus 81 ~l~~~--~~~~~----~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~---------------~~~~~ll~~le~~~~-- 137 (367)
T PRK14970 81 ELDAA--SNNSV----DDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS---------------AAFNAFLKTLEEPPA-- 137 (367)
T ss_pred Eeccc--cCCCH----HHHHHHHHHHhhccccCCcEEEEEeChhhcCH---------------HHHHHHHHHHhCCCC--
Confidence 22221 11112 23444444432 23456999999998741 223444454544221
Q ss_pred ccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhH
Q 001162 702 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDL 781 (1134)
Q Consensus 702 ~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL 781 (1134)
..++|.+++....+.+++.+ |+. .+.+++|+.++...++...+...++.++++.+..++..+.| +.+.+
T Consensus 138 -------~~~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~ 206 (367)
T PRK14970 138 -------HAIFILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDA 206 (367)
T ss_pred -------ceEEEEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHH
Confidence 25666667777888888888 654 68999999999999999999888999999999999998776 67777
Q ss_pred HHHHHHHHH
Q 001162 782 EILVDRTVH 790 (1134)
Q Consensus 782 ~~Lv~~a~~ 790 (1134)
...+++.+.
T Consensus 207 ~~~lekl~~ 215 (367)
T PRK14970 207 LSIFDRVVT 215 (367)
T ss_pred HHHHHHHHH
Confidence 777776553
No 220
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.31 E-value=5.3e-11 Score=136.66 Aligned_cols=205 Identities=18% Similarity=0.230 Sum_probs=131.3
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcC-----CcEEEEeC
Q 001162 837 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-----LRFISVKG 911 (1134)
Q Consensus 837 ~~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~-----~~~i~i~~ 911 (1134)
++.+..|+++.|.+++.+.+...+... ...+++|+||||||||++++++++++. .+++.+++
T Consensus 10 kyrP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~ 76 (319)
T PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA 76 (319)
T ss_pred hhCCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc
Confidence 345678999999999999999887532 112689999999999999999999872 45666665
Q ss_pred cccchhcccccHHHHHHHHHH-hh----h-cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEE
Q 001162 912 PELLNKYIGASEQAVRDIFSK-AT----A-AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFA 985 (1134)
Q Consensus 912 ~el~~~~~G~se~~v~~lf~~-A~----~-~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIa 985 (1134)
++-.+ ...+++.+.. +. . ..+.+++|||+|.+.. ...+.|+..++.... .+.+|.
T Consensus 77 ~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-----------~~~~~L~~~le~~~~--~~~lIl 137 (319)
T PRK00440 77 SDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-----------DAQQALRRTMEMYSQ--NTRFIL 137 (319)
T ss_pred ccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-----------HHHHHHHHHHhcCCC--CCeEEE
Confidence 54211 1122222222 21 1 2356999999998832 234556666654332 344455
Q ss_pred ecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHH
Q 001162 986 ATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVH 1064 (1134)
Q Consensus 986 tTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~ 1064 (1134)
+++.+..+.+++.+ |+. .+.|++++.++...+++.++++.++. ++..++.++..+. +|++.+.+.....+.
T Consensus 138 ~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~----gd~r~~~~~l~~~~~- 209 (319)
T PRK00440 138 SCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSE----GDMRKAINALQAAAA- 209 (319)
T ss_pred EeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHHHH-
Confidence 66777777777887 655 58999999999999999988876653 3334666666554 444443332221111
Q ss_pred HHHhccCCCCCCCcccccHHHHHHHHhhc
Q 001162 1065 EILNNIDSNEPGKMPVITDALLKSIASKA 1093 (1134)
Q Consensus 1065 ~~~~~~~~~~~~~~~~it~e~l~~al~~~ 1093 (1134)
. ...||.+++..++...
T Consensus 210 ~------------~~~it~~~v~~~~~~~ 226 (319)
T PRK00440 210 T------------GKEVTEEAVYKITGTA 226 (319)
T ss_pred c------------CCCCCHHHHHHHhCCC
Confidence 0 1357888877776443
No 221
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.31 E-value=3.1e-11 Score=143.47 Aligned_cols=201 Identities=15% Similarity=0.238 Sum_probs=123.2
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCC
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH 955 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~ 955 (1134)
.+++||||+|+|||+|++++|+++ +..++.++..++...+...-...-...|.... ..+++|+|||++.+.++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~-- 218 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG-- 218 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh--
Confidence 469999999999999999999876 68889998877765443221111112233322 345799999999985431
Q ss_pred CCCcchhhHHHhHhhhcccccccccEEEEEecCCCCc---cchhhcCcCccc--ceeecCCCCHHHHHHHHHHHHccCCC
Q 001162 956 DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRKLPL 1030 (1134)
Q Consensus 956 ~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~---ld~allrpgRfd--~~i~~~~p~~~er~~Il~~~~~~~~~ 1030 (1134)
....++...++.+......+|++++..|.. +++.+.+ ||. ..+.+++|+.++|..|++..++..++
T Consensus 219 -------~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~ 289 (445)
T PRK12422 219 -------ATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSI 289 (445)
T ss_pred -------hhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 112233333332222334566655555544 6789998 885 78889999999999999998887654
Q ss_pred C-CcccHHHHHHhccCCcHHHHHHHHHHHHHH-HHHHHHhccCCCCCCCcccccHHHHHHHHhhc---CC--CCcHHHH
Q 001162 1031 A-DDVDLEAIAHMTEGFSGADLQALLSDAQLS-AVHEILNNIDSNEPGKMPVITDALLKSIASKA---RP--SVSEAEK 1102 (1134)
Q Consensus 1031 ~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~-a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~---~p--s~~~~~~ 1102 (1134)
. ++.-++.|+....+ +.+.+.+.+...++. |..... ...||.++.+++++.. .+ .++.+.+
T Consensus 290 ~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~----------~~~i~~~~~~~~l~~~~~~~~~~~~t~~~I 357 (445)
T PRK12422 290 RIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLS----------HQLLYVDDIKALLHDVLEAAESVRLTPSKI 357 (445)
T ss_pred CCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhh----------CCCCCHHHHHHHHHHhhhcccCCCCCHHHH
Confidence 3 22224455555442 345555444443322 222211 1358888888888753 22 3555555
No 222
>PRK06893 DNA replication initiation factor; Validated
Probab=99.31 E-value=2.9e-11 Score=132.14 Aligned_cols=180 Identities=11% Similarity=0.122 Sum_probs=109.5
Q ss_pred ceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCC
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD 956 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~ 956 (1134)
.++||||||||||+|++++|+++ +.....++..+. .....++++..+ +..+|+|||++.+.+..
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~~--~~dlLilDDi~~~~~~~--- 107 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENLE--QQDLVCLDDLQAVIGNE--- 107 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhcc--cCCEEEEeChhhhcCCh---
Confidence 58999999999999999999886 334444444321 111123344333 34699999999985431
Q ss_pred CCcchhhHHHhHhhhcccccccc-cEEEEEecCCCCcc---chhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-
Q 001162 957 NTGVTDRVVNQFLTELDGVEVLT-GVFVFAATSRPDLL---DAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA- 1031 (1134)
Q Consensus 957 ~~~~~~rv~~~lL~~ld~~~~~~-~v~vIatTn~p~~l---d~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~- 1031 (1134)
.... .+...++.....+ .++|++++..|..+ ++.+.++.+++..+.+++|+.++|..|++..+...++.
T Consensus 108 ---~~~~---~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l 181 (229)
T PRK06893 108 ---EWEL---AIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIEL 181 (229)
T ss_pred ---HHHH---HHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 1112 2333333333333 35566666667664 48999966667889999999999999999877654442
Q ss_pred CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHh
Q 001162 1032 DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIAS 1091 (1134)
Q Consensus 1032 ~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~ 1091 (1134)
++.-.+.|++..+| +.+.+.+++..-...+ +. ....||.+.+++++.
T Consensus 182 ~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~----~~--------~~~~it~~~v~~~L~ 228 (229)
T PRK06893 182 SDEVANFLLKRLDR-DMHTLFDALDLLDKAS----LQ--------AQRKLTIPFVKEILG 228 (229)
T ss_pred CHHHHHHHHHhccC-CHHHHHHHHHHHHHHH----Hh--------cCCCCCHHHHHHHhc
Confidence 23335667776653 3344444333211111 11 123589888888763
No 223
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.31 E-value=1.9e-11 Score=132.32 Aligned_cols=175 Identities=20% Similarity=0.366 Sum_probs=113.4
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHH-HHHHHHHHHhhcCCeEEEEcccchhcc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ-ALSNFISEALDHAPSIVIFDNLDSIIS 669 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~-~l~~~f~~a~~~~PsIL~IDEiD~L~~ 669 (1134)
..++||||+|+|||+|+++++.++..... ...++|+++..+.......... .+.++.+.. ....+|+|||++.+.+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~-~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHP-GKRVVYLSAEEFIREFADALRDGEIEEFKDRL--RSADLLIIDDIQFLAG 111 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCT-TS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGTT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccc-cccceeecHHHHHHHHHHHHHcccchhhhhhh--hcCCEEEEecchhhcC
Confidence 35999999999999999999998753221 1568889888776544333322 112222222 3557999999999852
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCC---CChhhccCCCccc--cccCCCCCHH
Q 001162 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFDF--HVQLPAPAAS 744 (1134)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~---Ld~aL~~~gRF~~--~i~l~~P~~e 744 (1134)
.. .....|..+++.+...+ .-+++++...|.. +++.|.+ ||.. .+.+.+|+.+
T Consensus 112 ---------~~----~~q~~lf~l~n~~~~~~-------k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~ 169 (219)
T PF00308_consen 112 ---------KQ----RTQEELFHLFNRLIESG-------KQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDE 169 (219)
T ss_dssp ---------HH----HHHHHHHHHHHHHHHTT-------SEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HH
T ss_pred ---------ch----HHHHHHHHHHHHHHhhC-------CeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHH
Confidence 11 22333444444433221 2455555555554 5688888 6654 7899999999
Q ss_pred HHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHH
Q 001162 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1134)
Q Consensus 745 eR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~ 791 (1134)
+|.+|++.++..+++.++++++..++...++ +.++|..++++....
T Consensus 170 ~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 170 DRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLDAY 215 (219)
T ss_dssp HHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998776 788888888876543
No 224
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.31 E-value=1.7e-11 Score=146.04 Aligned_cols=166 Identities=16% Similarity=0.262 Sum_probs=108.7
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc-----CCcEEEEeCcccchhcccccH-HHHHHHHHHhhhcCCeEEEEcCcccccCC
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASE-QAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~-----~~~~i~i~~~el~~~~~G~se-~~v~~lf~~A~~~~P~VLfiDEid~l~~~ 952 (1134)
.+++||||+|||||+|++++|+++ +..++.+++.++...+...-. ..+.. |.......+.+|+|||++.+..+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 369999999999999999999976 467889999887766542211 11222 22222235789999999988543
Q ss_pred CCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCc---cchhhcCcCcc--cceeecCCCCHHHHHHHHHHHHcc
Q 001162 953 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRL--DRLLFCDFPSPRERLDILKVISRK 1027 (1134)
Q Consensus 953 r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~---ld~allrpgRf--d~~i~~~~p~~~er~~Il~~~~~~ 1027 (1134)
. ....++...++.+......+|+++...|.. +++.+.+ || ...+.+.+|+.+.|..|++..++.
T Consensus 210 ~---------~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 210 T---------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred H---------HHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 1 122233333443333445666666666665 5677887 66 467789999999999999998875
Q ss_pred CCCC-CcccHHHHHHhccCCcHHHHHHHHHH
Q 001162 1028 LPLA-DDVDLEAIAHMTEGFSGADLQALLSD 1057 (1134)
Q Consensus 1028 ~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~ 1057 (1134)
.++. ++.-++.||....| +.++|..++..
T Consensus 279 ~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~ 308 (440)
T PRK14088 279 EHGELPEEVLNFVAENVDD-NLRRLRGAIIK 308 (440)
T ss_pred cCCCCCHHHHHHHHhcccc-CHHHHHHHHHH
Confidence 4432 22226666766653 45666655554
No 225
>PRK08727 hypothetical protein; Validated
Probab=99.31 E-value=4.3e-11 Score=131.07 Aligned_cols=165 Identities=23% Similarity=0.320 Sum_probs=110.8
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccC
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1134)
..++|+||+|||||+|+++++..+.... ..+.++++.++.. .+.+.++.. ....+|+|||++.+.+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~---~~~~y~~~~~~~~--------~~~~~~~~l--~~~dlLiIDDi~~l~~~ 108 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAG---RSSAYLPLQAAAG--------RLRDALEAL--EGRSLVALDGLESIAGQ 108 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CcEEEEeHHHhhh--------hHHHHHHHH--hcCCEEEEeCcccccCC
Confidence 4599999999999999999999875432 4556666544322 222333332 34569999999988521
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecC-CCCCC---ChhhccCCCc--cccccCCCCCHH
Q 001162 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQ-SLEKI---PQSLTSSGRF--DFHVQLPAPAAS 744 (1134)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn-~~~~L---d~aL~~~gRF--~~~i~l~~P~~e 744 (1134)
. .....++ .+++..... +..+|.|++ .+..+ ++.|++ || ...+.|++|+.+
T Consensus 109 ~---------~~~~~lf----~l~n~~~~~--------~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e 165 (233)
T PRK08727 109 R---------EDEVALF----DFHNRARAA--------GITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDV 165 (233)
T ss_pred h---------HHHHHHH----HHHHHHHHc--------CCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHH
Confidence 1 1112333 333332221 133444444 55554 688988 76 457899999999
Q ss_pred HHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 001162 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1134)
Q Consensus 745 eR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a 792 (1134)
++.+|++.++..+++.++++.+..|+..++| +.+.+.+++++....+
T Consensus 166 ~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~ 212 (233)
T PRK08727 166 ARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRES 212 (233)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH
Confidence 9999999988878899999999999999886 4555555566655433
No 226
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.30 E-value=4.1e-11 Score=130.86 Aligned_cols=162 Identities=16% Similarity=0.239 Sum_probs=110.8
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhc
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSII 668 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~ 668 (1134)
...+++|+||+|||||+|++++++.+.... ..+.+++|..+... +. ......+|+|||+|.+.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~---~~~~~i~~~~~~~~------------~~--~~~~~~~liiDdi~~l~ 103 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGG---RNARYLDAASPLLA------------FD--FDPEAELYAVDDVERLD 103 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEehHHhHHH------------Hh--hcccCCEEEEeChhhcC
Confidence 446799999999999999999999874322 56778888765321 11 12345799999999873
Q ss_pred cCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCC-CC--CCChhhccCCCc--cccccCCCCCH
Q 001162 669 SSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS-LE--KIPQSLTSSGRF--DFHVQLPAPAA 743 (1134)
Q Consensus 669 ~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~-~~--~Ld~aL~~~gRF--~~~i~l~~P~~ 743 (1134)
. .....+ ...++...... ..++|.+++. +. .+.+.|.+ || ...+++++|+.
T Consensus 104 ~-----------~~~~~L----~~~~~~~~~~~-------~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~ 159 (227)
T PRK08903 104 D-----------AQQIAL----FNLFNRVRAHG-------QGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSD 159 (227)
T ss_pred c-----------hHHHHH----HHHHHHHHHcC-------CcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCH
Confidence 1 111233 33333322211 2334444443 21 24566776 66 46899999999
Q ss_pred HHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 001162 744 SERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1134)
Q Consensus 744 eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a 792 (1134)
+++..++.......++.++++.+..++...+| +.+++..+++..-..+
T Consensus 160 ~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 160 ADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYS 207 (227)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 99999999988888899999999999996666 8889988888754433
No 227
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=6.6e-11 Score=142.00 Aligned_cols=193 Identities=19% Similarity=0.257 Sum_probs=129.4
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCce-----------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~----------- 620 (1134)
.|.++.|.+.....+.+.+.. ...+..+|||||+|+|||++|+.+|+.+......
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~--------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKL--------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred cHHHccChHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 467788888888777665532 1223458999999999999999999998631110
Q ss_pred -------eeEEEEEecccccccchhhHHHHHHHHHHHH-hhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHH
Q 001162 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEA-LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (1134)
Q Consensus 621 -------~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a-~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~ 692 (1134)
...++.++.+. ....+.++. +.+.+... ......|++|||+|.+.. ...+.|+.
T Consensus 80 ~~i~~g~~~d~~eidaas--~~gvd~ir~-I~~~~~~~P~~~~~KVvIIDEad~Lt~---------------~a~naLLk 141 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAAS--NRGIDDIRA-LRDAVSYTPIKGKYKVYIIDEAHMLTK---------------EAFNALLK 141 (486)
T ss_pred HHHhcCCCCcEEEEeCcc--CCCHHHHHH-HHHHHHhCcccCCeeEEEEEChhhcCH---------------HHHHHHHH
Confidence 01223333211 112222222 22222221 123456999999998841 22344555
Q ss_pred HHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhh
Q 001162 693 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 772 (1134)
Q Consensus 693 ~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~ 772 (1134)
.++.... .+++|.+|+.++.+.+.+.+ |+. .+.|++|+.+++..++...+...++.++++.+..++..
T Consensus 142 ~LEepp~---------~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~ 209 (486)
T PRK14953 142 TLEEPPP---------RTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQA 209 (486)
T ss_pred HHhcCCC---------CeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 5554322 25666666777888888888 765 78999999999999999999988999999999999998
Q ss_pred cCCCChhhHHHHHHHHH
Q 001162 773 CDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 773 teG~s~~DL~~Lv~~a~ 789 (1134)
+.| +.+++..+++.++
T Consensus 210 s~G-~lr~al~~Ldkl~ 225 (486)
T PRK14953 210 SEG-GMRDAASLLDQAS 225 (486)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 887 6788888888765
No 228
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=6.6e-11 Score=144.70 Aligned_cols=191 Identities=18% Similarity=0.227 Sum_probs=136.0
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCce-----------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~----------- 620 (1134)
+|.+++|.+..++.+.+.+.. ...+.++||+||+|+|||++|+.+|+.+......
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~--------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFET--------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 577889998888777665532 2335679999999999999999999998643210
Q ss_pred ------------eeEEEEEecccccccchhhHHHHHHHHHHHHh----hcCCeEEEEcccchhccCCCCCCCCCCchhHH
Q 001162 621 ------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVI 684 (1134)
Q Consensus 621 ------------~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~----~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~ 684 (1134)
...++.++... ....+. ++++++.+. .....|+||||+|.|..
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s--~~gvd~----IReIie~~~~~P~~a~~KVvIIDEad~Ls~--------------- 146 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAAS--HTGVDD----IREIIESVRYRPVSARYKVYIIDEVHMLST--------------- 146 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccc--cCCHHH----HHHHHHHHHhchhcCCcEEEEEEChHhCCH---------------
Confidence 01122333221 112333 444444432 22346999999999841
Q ss_pred HHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHH
Q 001162 685 ALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE 764 (1134)
Q Consensus 685 ~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~ 764 (1134)
.-.+.|+..+++... .+.+|.+|+..+.+.+.+++ |+. .+.|..++.++....++..+.+.++.++++
T Consensus 147 ~a~naLLKtLEePp~---------~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~e 214 (598)
T PRK09111 147 AAFNALLKTLEEPPP---------HVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDE 214 (598)
T ss_pred HHHHHHHHHHHhCCC---------CeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 335566666666443 36777777877888888888 764 899999999999999999999889999999
Q ss_pred HHHHHhhhcCCCChhhHHHHHHHHHH
Q 001162 765 ILLDVASKCDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 765 ~l~~la~~teG~s~~DL~~Lv~~a~~ 790 (1134)
.+..++..+.| +.+++..+++.++.
T Consensus 215 Al~lIa~~a~G-dlr~al~~Ldkli~ 239 (598)
T PRK09111 215 ALALIARAAEG-SVRDGLSLLDQAIA 239 (598)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHh
Confidence 99999998887 78888888877653
No 229
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=4.5e-11 Score=147.44 Aligned_cols=184 Identities=22% Similarity=0.257 Sum_probs=126.9
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCc------------
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------------ 905 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~------------ 905 (1134)
+.+..|++|+|++.+++.|...+... +.+..+||+||+|+|||++|+++|+.++..
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c 77 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC 77 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence 34578999999999999998877632 223457999999999999999999987531
Q ss_pred -------------EEEEeCcccchhcccccHHHHHHHHHHhhh----cCCeEEEEcCcccccCCCCCCCCcchhhHHHhH
Q 001162 906 -------------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQF 968 (1134)
Q Consensus 906 -------------~i~i~~~el~~~~~G~se~~v~~lf~~A~~----~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~l 968 (1134)
++.+++.. ...-+.++++.+.+.. ....|+||||+|.| .....+.|
T Consensus 78 ~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L-----------~~~a~naL 140 (585)
T PRK14950 78 EMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHML-----------STAAFNAL 140 (585)
T ss_pred HHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhC-----------CHHHHHHH
Confidence 22333211 1223456666554432 33569999999988 34567888
Q ss_pred hhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCc
Q 001162 969 LTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFS 1047 (1134)
Q Consensus 969 L~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~s 1047 (1134)
++.|+.. ...++||.+|+.++.+.+.+.+ |+. .+.|+.++..+...+++.++++.++. ++..+..|+..+.| +
T Consensus 141 Lk~LEep--p~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-d 214 (585)
T PRK14950 141 LKTLEEP--PPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-S 214 (585)
T ss_pred HHHHhcC--CCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8888743 3456666667777778888887 654 57899999999999999888776543 22335666666654 4
Q ss_pred HHHHHHHHH
Q 001162 1048 GADLQALLS 1056 (1134)
Q Consensus 1048 g~dl~~l~~ 1056 (1134)
.+++.+.+.
T Consensus 215 lr~al~~Le 223 (585)
T PRK14950 215 MRDAENLLQ 223 (585)
T ss_pred HHHHHHHHH
Confidence 455444433
No 230
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1e-10 Score=135.39 Aligned_cols=217 Identities=19% Similarity=0.260 Sum_probs=140.8
Q ss_pred CCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCc-----EEEEeCcccchhc--
Q 001162 846 VGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-----FISVKGPELLNKY-- 918 (1134)
Q Consensus 846 i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~-----~i~i~~~el~~~~-- 918 (1134)
+.+-++..+.+...+.-.+. -..+.++++|||||||||.+++.+++++... +++|||-.+-+.|
T Consensus 19 l~~Re~ei~~l~~~l~~~~~---------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 19 LPHREEEINQLASFLAPALR---------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred ccccHHHHHHHHHHHHHHhc---------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 56666777777666442211 1234469999999999999999999988543 8999997764432
Q ss_pred -------------ccccHH-HHHHHHHHhh-hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEE
Q 001162 919 -------------IGASEQ-AVRDIFSKAT-AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFV 983 (1134)
Q Consensus 919 -------------~G~se~-~v~~lf~~A~-~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~v 983 (1134)
.|.+.. ....+++... ....-|+++||+|.|..+.+ .++..|+...+.. ..++.+
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~--~~~v~v 159 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN--KVKVSI 159 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc--ceeEEE
Confidence 233322 2333333332 34567999999999976532 5666666665533 567889
Q ss_pred EEecCCCCc---cchhhcCcCccc-ceeecCCCCHHHHHHHHHHHHccCCCCCccc---HHHHHHhccCCcHHHHH---H
Q 001162 984 FAATSRPDL---LDAALLRPGRLD-RLLFCDFPSPRERLDILKVISRKLPLADDVD---LEAIAHMTEGFSGADLQ---A 1053 (1134)
Q Consensus 984 IatTn~p~~---ld~allrpgRfd-~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd---~~~La~~t~g~sg~dl~---~ 1053 (1134)
|+.+|..+. +||.+.+ +|. ..|.||+|+.+|..+|++...+.......++ +..+|..+. ..++|.+ .
T Consensus 160 i~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a-~~~GDAR~aid 236 (366)
T COG1474 160 IAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVA-AESGDARKAID 236 (366)
T ss_pred EEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHH-HcCccHHHHHH
Confidence 999998754 8899888 553 4589999999999999999887543232222 333333322 2222443 3
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhcCC
Q 001162 1054 LLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARP 1095 (1134)
Q Consensus 1054 l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~~p 1095 (1134)
+|+.|+..|-++ +.+.++.+|+..|-+...+
T Consensus 237 ilr~A~eiAe~~-----------~~~~v~~~~v~~a~~~~~~ 267 (366)
T COG1474 237 ILRRAGEIAERE-----------GSRKVSEDHVREAQEEIER 267 (366)
T ss_pred HHHHHHHHHHhh-----------CCCCcCHHHHHHHHHHhhH
Confidence 566666655433 4567888888888555444
No 231
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=5.8e-11 Score=144.58 Aligned_cols=194 Identities=20% Similarity=0.251 Sum_probs=134.6
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCce-----------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~----------- 620 (1134)
+|.++.|.+..++.+...+.. ...+..+|||||+|+|||++|+++|+.+......
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~--------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIES--------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 577889999888887776532 1224569999999999999999999998642110
Q ss_pred -------eeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001162 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1134)
Q Consensus 621 -------~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1134)
...++.++... ....+.++.....+..........|++|||+|.+.. ...+.|+..
T Consensus 80 ~~i~~~~~~dv~~idgas--~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~---------------~a~naLLK~ 142 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGAS--NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN---------------SAFNALLKT 142 (563)
T ss_pred HHHHcCCCCCeEEecCcc--cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH---------------HHHHHHHHh
Confidence 01222232211 112233333222222222223456999999998841 234455666
Q ss_pred HHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhc
Q 001162 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1134)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~t 773 (1134)
++.... .+++|++|+.+..+.+.+++ |+. .++|.+++.++..++++..+...++.++++.+..++...
T Consensus 143 LEepp~---------~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s 210 (563)
T PRK06647 143 IEEPPP---------YIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKS 210 (563)
T ss_pred hccCCC---------CEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 665332 47777787878889999998 765 789999999999999999988888899999999999988
Q ss_pred CCCChhhHHHHHHHHH
Q 001162 774 DGYDAYDLEILVDRTV 789 (1134)
Q Consensus 774 eG~s~~DL~~Lv~~a~ 789 (1134)
.| +.+++..++++++
T Consensus 211 ~G-dlR~alslLdkli 225 (563)
T PRK06647 211 TG-SVRDAYTLFDQVV 225 (563)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 87 7888888888765
No 232
>PRK05642 DNA replication initiation factor; Validated
Probab=99.29 E-value=5.5e-11 Score=130.23 Aligned_cols=167 Identities=19% Similarity=0.248 Sum_probs=115.8
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccC
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1134)
.+++|+||+|+|||+|++++++++.... ..++|+++.++.... ..+++... ...+|+|||++.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~---~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~~ 112 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRG---EPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAGK 112 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcCC
Confidence 5699999999999999999998875332 456788887765321 11222221 2358999999987421
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCC---CChhhccCCCc--cccccCCCCCHHH
Q 001162 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRF--DFHVQLPAPAASE 745 (1134)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~---Ld~aL~~~gRF--~~~i~l~~P~~ee 745 (1134)
......+...+ +.+...+ ..++++++..+.. ..+.|++ || ...+.+.+|+.++
T Consensus 113 ---------~~~~~~Lf~l~----n~~~~~g-------~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~ 170 (234)
T PRK05642 113 ---------ADWEEALFHLF----NRLRDSG-------RRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDED 170 (234)
T ss_pred ---------hHHHHHHHHHH----HHHHhcC-------CEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHH
Confidence 11112344433 3332211 3566666665543 3688898 77 3578899999999
Q ss_pred HHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHh
Q 001162 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAV 793 (1134)
Q Consensus 746 R~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~ 793 (1134)
|.+|++..+...++.++++++..++...++ +.+.+..++++....+.
T Consensus 171 ~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l 217 (234)
T PRK05642 171 KLRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASL 217 (234)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 999999777777889999999999999887 78888888887765443
No 233
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.29 E-value=7e-11 Score=140.93 Aligned_cols=197 Identities=16% Similarity=0.260 Sum_probs=130.9
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHH---HHHHHHHHHhhcCCeEEEEcccchh
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ---ALSNFISEALDHAPSIVIFDNLDSI 667 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~---~l~~~f~~a~~~~PsIL~IDEiD~L 667 (1134)
.+++|||++|+|||+|++++++++..... ...++++++..+.......+.. .+...... .....+|+|||++.+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~-~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l 218 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFS-DLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFL 218 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEeccccc
Confidence 45999999999999999999998753211 1567788888776544333322 12222111 245679999999987
Q ss_pred ccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCC---CCChhhccCCCcc--ccccCCCCC
Q 001162 668 ISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFD--FHVQLPAPA 742 (1134)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~---~Ld~aL~~~gRF~--~~i~l~~P~ 742 (1134)
.++ ......+...+....+. + .-+|+++...|+ .+++.|.+ ||. ..+.+.+|+
T Consensus 219 ~~k---------~~~~e~lf~l~N~~~~~----~-------k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd 276 (450)
T PRK14087 219 SYK---------EKTNEIFFTIFNNFIEN----D-------KQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLD 276 (450)
T ss_pred cCC---------HHHHHHHHHHHHHHHHc----C-------CcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcC
Confidence 421 11122344444333322 1 123444434443 35688888 764 567899999
Q ss_pred HHHHHHHHHHHhhhccc--CCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhh
Q 001162 743 ASERKAILEHEIQRRSL--ECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAM 820 (1134)
Q Consensus 743 ~eeR~~IL~~~l~~~~l--~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al 820 (1134)
.++|.+||+..+...++ .++++++..|+..+.| +++.+..++.++...+.... ....++.+....++
T Consensus 277 ~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~----------~~~~it~~~v~~~l 345 (450)
T PRK14087 277 NKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNP----------EEKIITIEIVSDLF 345 (450)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhccc----------CCCCCCHHHHHHHH
Confidence 99999999999987664 6899999999999888 89999999998875554321 01347777777776
Q ss_pred hcc
Q 001162 821 HEF 823 (1134)
Q Consensus 821 ~~~ 823 (1134)
.++
T Consensus 346 ~~~ 348 (450)
T PRK14087 346 RDI 348 (450)
T ss_pred hhc
Confidence 553
No 234
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.1e-10 Score=135.12 Aligned_cols=219 Identities=20% Similarity=0.240 Sum_probs=145.5
Q ss_pred cccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccccc
Q 001162 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635 (1134)
Q Consensus 556 l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~ 635 (1134)
+-+++.+++.+...+...++ ...|.++++||+||||||.+++.+++++...... ..+++|||-.+.+.
T Consensus 19 l~~Re~ei~~l~~~l~~~~~-----------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~-~~~~yINc~~~~t~ 86 (366)
T COG1474 19 LPHREEEINQLASFLAPALR-----------GERPSNIIIYGPTGTGKTATVKFVMEELEESSAN-VEVVYINCLELRTP 86 (366)
T ss_pred ccccHHHHHHHHHHHHHHhc-----------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhcc-CceEEEeeeeCCCH
Confidence 56789999999988877665 3445669999999999999999999998744321 23899999766443
Q ss_pred ch----------------hhHHHHHHHHHHHHhh-cCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 001162 636 KG----------------PIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 698 (1134)
Q Consensus 636 ~~----------------~~~~~~l~~~f~~a~~-~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~ 698 (1134)
+. -...+.+..+++.... ....|++|||+|.|..... .++..|....+..
T Consensus 87 ~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~------------~~LY~L~r~~~~~- 153 (366)
T COG1474 87 YQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG------------EVLYSLLRAPGEN- 153 (366)
T ss_pred HHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc------------hHHHHHHhhcccc-
Confidence 21 0111222222222222 3456999999999973211 2333333333332
Q ss_pred cccccccCCCcEEEEEecCCC---CCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhc--ccCCCHHHHHHHhhh-
Q 001162 699 EKRKSSCGIGPIAFVASAQSL---EKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRR--SLECSDEILLDVASK- 772 (1134)
Q Consensus 699 ~~~~~~~~~~~V~vIattn~~---~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~--~l~~~~~~l~~la~~- 772 (1134)
...+.+|+.+|.. +.+++.+.+... ..+|.||+++.+|...|++...+.. ...++++.+..+|..
T Consensus 154 --------~~~v~vi~i~n~~~~~~~ld~rv~s~l~-~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~ 224 (366)
T COG1474 154 --------KVKVSIIAVSNDDKFLDYLDPRVKSSLG-PSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALV 224 (366)
T ss_pred --------ceeEEEEEEeccHHHHHHhhhhhhhccC-cceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHH
Confidence 1248999999985 467888888422 2458999999999999999887742 234677776655543
Q ss_pred --cCCCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhh
Q 001162 773 --CDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAM 820 (1134)
Q Consensus 773 --teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al 820 (1134)
..| +++-...++++|.+.|-.+ ....++.++...|.
T Consensus 225 a~~~G-DAR~aidilr~A~eiAe~~-----------~~~~v~~~~v~~a~ 262 (366)
T COG1474 225 AAESG-DARKAIDILRRAGEIAERE-----------GSRKVSEDHVREAQ 262 (366)
T ss_pred HHcCc-cHHHHHHHHHHHHHHHHhh-----------CCCCcCHHHHHHHH
Confidence 344 6676778888888877654 33557777777664
No 235
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=1.1e-10 Score=139.16 Aligned_cols=194 Identities=21% Similarity=0.240 Sum_probs=132.3
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc------------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~------------ 619 (1134)
+|.+++|.+..++.+.+.+.. ...+..+|||||+|+|||++|+.+|+.+.....
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~--------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRF--------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 577888998888776665532 123456999999999999999999999864210
Q ss_pred -------eeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHH
Q 001162 620 -------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (1134)
Q Consensus 620 -------~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~ 692 (1134)
....++.++.... .....++.....+-.........|+||||+|.+.. ...+.|+.
T Consensus 81 C~~i~~~~~~d~~~i~g~~~--~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~---------------~~~n~LLk 143 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASH--RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK---------------EAFNSLLK 143 (451)
T ss_pred HHHHhcCCCCceEEeecccc--CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH---------------HHHHHHHH
Confidence 0012333332211 11233333222221111224567999999999841 23455666
Q ss_pred HHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhh
Q 001162 693 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 772 (1134)
Q Consensus 693 ~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~ 772 (1134)
.++.... .+++|++++....+.+.+++ |+. .++|++++.++....+...+.+.++.++++.+..++..
T Consensus 144 ~lEep~~---------~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~ 211 (451)
T PRK06305 144 TLEEPPQ---------HVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARA 211 (451)
T ss_pred HhhcCCC---------CceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 6665332 36777777888889999998 765 78999999999999999988888888999999999998
Q ss_pred cCCCChhhHHHHHHHHH
Q 001162 773 CDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 773 teG~s~~DL~~Lv~~a~ 789 (1134)
+.| +.+++..+++...
T Consensus 212 s~g-dlr~a~~~Lekl~ 227 (451)
T PRK06305 212 AQG-SLRDAESLYDYVV 227 (451)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 877 6677777766654
No 236
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=8.1e-11 Score=137.47 Aligned_cols=190 Identities=17% Similarity=0.178 Sum_probs=121.8
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc------------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~------------ 619 (1134)
.|++++|.+..++.+.+.+..-.. .+..++...+..+||+||+|+|||++|+++|+.+.....
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~-----~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~ 77 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA-----DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACR 77 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc-----cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHH
Confidence 366788988888887776643221 122233445677999999999999999999998764320
Q ss_pred -----eeeEEEEEecccccccchhhHHHHHHHHHHHHhh----cCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHH
Q 001162 620 -----LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFL 690 (1134)
Q Consensus 620 -----~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~----~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L 690 (1134)
....+.++.... .....+. ++++++.+.. ....|+||||+|.+.. ...+.|
T Consensus 78 ~~~~~~hpD~~~i~~~~-~~i~i~~----iR~l~~~~~~~p~~~~~kViiIDead~m~~---------------~aanaL 137 (394)
T PRK07940 78 TVLAGTHPDVRVVAPEG-LSIGVDE----VRELVTIAARRPSTGRWRIVVIEDADRLTE---------------RAANAL 137 (394)
T ss_pred HHhcCCCCCEEEecccc-ccCCHHH----HHHHHHHHHhCcccCCcEEEEEechhhcCH---------------HHHHHH
Confidence 001122333322 1112233 4455554432 2345999999999842 223556
Q ss_pred HHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHh
Q 001162 691 VDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVA 770 (1134)
Q Consensus 691 ~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la 770 (1134)
+..+++... ++++|.+|+.++.+.+.++| |+. .+.|++|+.++..++|... . .++++....++
T Consensus 138 Lk~LEep~~---------~~~fIL~a~~~~~llpTIrS--Rc~-~i~f~~~~~~~i~~~L~~~---~--~~~~~~a~~la 200 (394)
T PRK07940 138 LKAVEEPPP---------RTVWLLCAPSPEDVLPTIRS--RCR-HVALRTPSVEAVAEVLVRR---D--GVDPETARRAA 200 (394)
T ss_pred HHHhhcCCC---------CCeEEEEECChHHChHHHHh--hCe-EEECCCCCHHHHHHHHHHh---c--CCCHHHHHHHH
Confidence 666665432 24455555558899999999 764 8999999999988877632 1 24677778889
Q ss_pred hhcCCCChhhHHH
Q 001162 771 SKCDGYDAYDLEI 783 (1134)
Q Consensus 771 ~~teG~s~~DL~~ 783 (1134)
..++|..+..+.-
T Consensus 201 ~~s~G~~~~A~~l 213 (394)
T PRK07940 201 RASQGHIGRARRL 213 (394)
T ss_pred HHcCCCHHHHHHH
Confidence 8999976655443
No 237
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.26 E-value=1.8e-10 Score=125.81 Aligned_cols=199 Identities=16% Similarity=0.163 Sum_probs=123.0
Q ss_pred CCCCCCC--ChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccc
Q 001162 841 SGWDDVG--GLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL 915 (1134)
Q Consensus 841 ~~~~~i~--gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~ 915 (1134)
.+|++.. +.+.+...+++.... .....+++|+||+|||||++|++++++. +..++.+++.++.
T Consensus 15 ~~~d~f~~~~~~~~~~~l~~~~~~------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 15 PTFDNFVAGENAELVARLRELAAG------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred hhhcccccCCcHHHHHHHHHHHhc------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 4566643 345566666554431 1234579999999999999999999875 6788888887653
Q ss_pred hhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccE-EEEEecCCCC--c
Q 001162 916 NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGV-FVFAATSRPD--L 992 (1134)
Q Consensus 916 ~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v-~vIatTn~p~--~ 992 (1134)
.. +.. .....+|+|||+|.+.. .....+...++........ ++++++..|. .
T Consensus 83 ~~------------~~~--~~~~~~liiDdi~~l~~-----------~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~ 137 (227)
T PRK08903 83 LA------------FDF--DPEAELYAVDDVERLDD-----------AQQIALFNLFNRVRAHGQGALLVAGPAAPLALP 137 (227)
T ss_pred HH------------Hhh--cccCCEEEEeChhhcCc-----------hHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCC
Confidence 21 111 12356999999998732 1223344444433334443 4444443332 2
Q ss_pred cchhhcCcCcc--cceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhc
Q 001162 993 LDAALLRPGRL--DRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNN 1069 (1134)
Q Consensus 993 ld~allrpgRf--d~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~ 1069 (1134)
+.+.+.+ || ...+.+++|+.+++..+++....+.++. ++..+..|++... -+.+++..+++.-...|..
T Consensus 138 l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~-gn~~~l~~~l~~l~~~~~~----- 209 (227)
T PRK08903 138 LREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFR-RDMPSLMALLDALDRYSLE----- 209 (227)
T ss_pred CCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHH-----
Confidence 4577776 66 5788999999999999998877665543 2223566666443 3456666665542222211
Q ss_pred cCCCCCCCcccccHHHHHHHHh
Q 001162 1070 IDSNEPGKMPVITDALLKSIAS 1091 (1134)
Q Consensus 1070 ~~~~~~~~~~~it~e~l~~al~ 1091 (1134)
....||...+++++.
T Consensus 210 -------~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 210 -------QKRPVTLPLLREMLA 224 (227)
T ss_pred -------hCCCCCHHHHHHHHh
Confidence 124799999998885
No 238
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.26 E-value=1.4e-10 Score=133.15 Aligned_cols=192 Identities=20% Similarity=0.242 Sum_probs=125.8
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~ 631 (1134)
++.++.|.+..++.+...+.. ....++||+||||||||++++++++.+..... ...++.++++.
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~---------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-~~~~i~~~~~~ 78 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKE---------------KNMPHLLFAGPPGTGKTTAALALARELYGEDW-RENFLELNASD 78 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhC---------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-ccceEEecccc
Confidence 466777888777766655421 11135999999999999999999999753321 23445555443
Q ss_pred ccccchhhHHHHHHHHHHHH-hh-cCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 632 LSLEKGPIIRQALSNFISEA-LD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a-~~-~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
..+ .......+..+.... .. ..+.+++|||+|.+.. .....|...++.... .
T Consensus 79 ~~~--~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~---------------~~~~~L~~~le~~~~---------~ 132 (319)
T PRK00440 79 ERG--IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS---------------DAQQALRRTMEMYSQ---------N 132 (319)
T ss_pred ccc--hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH---------------HHHHHHHHHHhcCCC---------C
Confidence 221 122223333322221 11 2356999999998841 112345555554332 2
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
..+|.+++....+.+.+.+ |+. .++|++++.++...+++..+...++.++++.+..++..+.| +.+.+...++.++
T Consensus 133 ~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~ 208 (319)
T PRK00440 133 TRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAA 208 (319)
T ss_pred CeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 4566667777777777887 765 68999999999999999999988999999999999998876 5555555555443
No 239
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.26 E-value=9.2e-11 Score=141.36 Aligned_cols=188 Identities=20% Similarity=0.267 Sum_probs=119.4
Q ss_pred ceEEEcCCCCchhHHHHHHHHHc-----CCcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCC
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRG 954 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~-----~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~ 954 (1134)
.++|||++|||||+|++++++++ +..++++++.+|.+.|.........+.|... -..+++|+||||+.+..+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke- 393 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE- 393 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH-
Confidence 49999999999999999999976 5788999999988776543222222233322 2245899999999986432
Q ss_pred CCCCcchhhHHHhHhhhcccccccccEEEEEecCC-CC---ccchhhcCcCcc--cceeecCCCCHHHHHHHHHHHHccC
Q 001162 955 HDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSR-PD---LLDAALLRPGRL--DRLLFCDFPSPRERLDILKVISRKL 1028 (1134)
Q Consensus 955 ~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~-p~---~ld~allrpgRf--d~~i~~~~p~~~er~~Il~~~~~~~ 1028 (1134)
....+|...++.+...++.+|| |++. |. .+++.|.+ || .-++.+..|+.+.|..||+..++..
T Consensus 394 --------~tqeeLF~l~N~l~e~gk~III-TSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r 462 (617)
T PRK14086 394 --------STQEEFFHTFNTLHNANKQIVL-SSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQE 462 (617)
T ss_pred --------HHHHHHHHHHHHHHhcCCCEEE-ecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhc
Confidence 1112333333333333444555 5554 43 37889998 76 5667899999999999999988776
Q ss_pred CCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhc
Q 001162 1029 PLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 1093 (1134)
Q Consensus 1029 ~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~ 1093 (1134)
++. .+.-++.|+.... -+.++|..++..-...+... ...||.+.++.+++..
T Consensus 463 ~l~l~~eVi~yLa~r~~-rnvR~LegaL~rL~a~a~~~------------~~~itl~la~~vL~~~ 515 (617)
T PRK14086 463 QLNAPPEVLEFIASRIS-RNIRELEGALIRVTAFASLN------------RQPVDLGLTEIVLRDL 515 (617)
T ss_pred CCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHhh------------CCCCCHHHHHHHHHHh
Confidence 654 2222566666654 24566666555432222111 1246666666666543
No 240
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.25 E-value=1.3e-10 Score=133.56 Aligned_cols=136 Identities=19% Similarity=0.283 Sum_probs=88.8
Q ss_pred CCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc-ccccccCCCcEEEEEecC----CCCCCChhhccC
Q 001162 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE-KRKSSCGIGPIAFVASAQ----SLEKIPQSLTSS 729 (1134)
Q Consensus 655 ~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~-~~~~~~~~~~V~vIattn----~~~~Ld~aL~~~ 729 (1134)
+-+|+||||+|+++.+..... ..-....+.+.|+.++++-.- .........++.+|++.- .+.+|-|.|..
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~---~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G- 322 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSG---ADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG- 322 (441)
T ss_pred cCCEEEEEchhhhcccCCCCC---CCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC-
Confidence 456999999999986432111 111223566677777765221 111233345788888754 35556677766
Q ss_pred CCccccccCCCCCHHHHHHHHH----H-------Hhhhcc--cCCCHHHHHHHhhhc-------CCCChhhHHHHHHHHH
Q 001162 730 GRFDFHVQLPAPAASERKAILE----H-------EIQRRS--LECSDEILLDVASKC-------DGYDAYDLEILVDRTV 789 (1134)
Q Consensus 730 gRF~~~i~l~~P~~eeR~~IL~----~-------~l~~~~--l~~~~~~l~~la~~t-------eG~s~~DL~~Lv~~a~ 789 (1134)
||+.++.+.+++.++...||. . ++...+ +.++++.+..+|... ++.-+|-|..++++.+
T Consensus 323 -R~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l 401 (441)
T TIGR00390 323 -RFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLL 401 (441)
T ss_pred -ccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 999999999999999999983 1 222223 457888888777664 4666777888888887
Q ss_pred HHHhcc
Q 001162 790 HAAVGR 795 (1134)
Q Consensus 790 ~~a~~r 795 (1134)
...+..
T Consensus 402 ~d~~fe 407 (441)
T TIGR00390 402 EDISFE 407 (441)
T ss_pred HHHHhc
Confidence 766654
No 241
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.24 E-value=8.4e-11 Score=131.08 Aligned_cols=132 Identities=24% Similarity=0.337 Sum_probs=93.5
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCc------ccchhcccccHHHHH---------------------HHH
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGP------ELLNKYIGASEQAVR---------------------DIF 930 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~------el~~~~~G~se~~v~---------------------~lf 930 (1134)
+.++||+||||||||++|+++|..+|.+++.+++. ++++.|.|.....+. .++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 35799999999999999999999999999999875 344444433222111 122
Q ss_pred HHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc--------------ccccEEEEEecCCCC-----
Q 001162 931 SKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--------------VLTGVFVFAATSRPD----- 991 (1134)
Q Consensus 931 ~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~--------------~~~~v~vIatTn~p~----- 991 (1134)
..++ .+.+|+|||++++. ..+.+.|+..|+.-. ...++.||+|+|...
T Consensus 101 ~A~~--~g~~lllDEi~r~~-----------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~ 167 (262)
T TIGR02640 101 LAVR--EGFTLVYDEFTRSK-----------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH 167 (262)
T ss_pred HHHH--cCCEEEEcchhhCC-----------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccccee
Confidence 2222 23599999999973 345666666664311 123577899999763
Q ss_pred ccchhhcCcCcccceeecCCCCHHHHHHHHHHHH
Q 001162 992 LLDAALLRPGRLDRLLFCDFPSPRERLDILKVIS 1025 (1134)
Q Consensus 992 ~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~ 1025 (1134)
.+++++++ || ..++++.|+.++-.+|++...
T Consensus 168 ~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 168 ETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 36889999 88 578999999999999998764
No 242
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=5.3e-10 Score=137.75 Aligned_cols=183 Identities=18% Similarity=0.276 Sum_probs=132.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcC---------------
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS--------------- 903 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~--------------- 903 (1134)
.+..|++|.|++.+++.|...+... +.+..+|||||+|+|||++|+++|+.+.
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 4578999999999999998887632 2344589999999999999999999774
Q ss_pred ----------CcEEEEeCcccchhcccccHHHHHHHHHHhhh----cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHh
Q 001162 904 ----------LRFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 969 (1134)
Q Consensus 904 ----------~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~----~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL 969 (1134)
.+++.+++.+ ..+...++.+.+.+.. +...|++|||+|.| .....+.|+
T Consensus 80 sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L-----------s~~a~naLL 142 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML-----------SQAAFNAFL 142 (614)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccC-----------CHHHHHHHH
Confidence 2344444432 1224567777766643 23469999999998 345788999
Q ss_pred hhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCC-cccHHHHHHhccCCcH
Q 001162 970 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLAD-DVDLEAIAHMTEGFSG 1048 (1134)
Q Consensus 970 ~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~-~vd~~~La~~t~g~sg 1048 (1134)
..|+. ....+++|.+|+.+..|-+++++ |+ ..+.|.+++.++....++.++++.++.- ...+..|+..+.| +.
T Consensus 143 K~LEe--pp~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dl 216 (614)
T PRK14971 143 KTLEE--PPSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GM 216 (614)
T ss_pred HHHhC--CCCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 99974 33456666677777888899998 55 4689999999999999998888777642 2346777777653 44
Q ss_pred HHHHHHHH
Q 001162 1049 ADLQALLS 1056 (1134)
Q Consensus 1049 ~dl~~l~~ 1056 (1134)
+++.+.+.
T Consensus 217 r~al~~Le 224 (614)
T PRK14971 217 RDALSIFD 224 (614)
T ss_pred HHHHHHHH
Confidence 55444443
No 243
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.23 E-value=2.8e-10 Score=124.83 Aligned_cols=179 Identities=17% Similarity=0.140 Sum_probs=107.9
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcC---CcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCC
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACS---LRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH 955 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~---~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~ 955 (1134)
.+++||||+|||||+++++++++.. ..+..++..+... ...++++.... ..+|+|||++.+..+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~--- 112 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGD--- 112 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhh--CCEEEEeChhhhcCC---
Confidence 4799999999999999999998763 4455555544221 11122222222 259999999998532
Q ss_pred CCCcchhhHHHhHhhhccccccccc-EEEEEecCCCCc---cchhhcCcCccc--ceeecCCCCHHHHHHHHHHHHccCC
Q 001162 956 DNTGVTDRVVNQFLTELDGVEVLTG-VFVFAATSRPDL---LDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRKLP 1029 (1134)
Q Consensus 956 ~~~~~~~rv~~~lL~~ld~~~~~~~-v~vIatTn~p~~---ld~allrpgRfd--~~i~~~~p~~~er~~Il~~~~~~~~ 1029 (1134)
......+++.+...+ ..++ .+++++++.|.. +.|.|++ |+. .++.+.+|+.+++.++++..+...+
T Consensus 113 --~~~~~~lf~l~n~~~----e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~ 184 (235)
T PRK08084 113 --ELWEMAIFDLYNRIL----ESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRG 184 (235)
T ss_pred --HHHHHHHHHHHHHHH----HcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcC
Confidence 111122222222222 2233 455555555555 6799999 765 7889999999999999998666544
Q ss_pred CC-CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHh
Q 001162 1030 LA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIAS 1091 (1134)
Q Consensus 1030 ~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~ 1091 (1134)
+. ++.-.+.|++..+| +.+.+..++......+ +. ....||.+.+++++.
T Consensus 185 ~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~----l~--------~~~~it~~~~k~~l~ 234 (235)
T PRK08084 185 FELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRAS----IT--------AQRKLTIPFVKEILK 234 (235)
T ss_pred CCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHH----Hh--------cCCCCCHHHHHHHHc
Confidence 43 23336677777663 4555555544322111 11 123589888888763
No 244
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.23 E-value=4.7e-11 Score=141.30 Aligned_cols=199 Identities=17% Similarity=0.250 Sum_probs=142.1
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCce-eeEE-EEEec
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-VAHI-VFVCC 629 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~-~~~~-~~v~~ 629 (1134)
.|.++.|.+.....+.+.+.. ..-..++||+||.|||||++||.+|+.++..... ..++ ....|
T Consensus 14 ~F~evvGQe~v~~~L~nal~~--------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALEN--------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHh--------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 466778888777766665532 1122569999999999999999999999855311 0110 01112
Q ss_pred cccc--------------ccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHH
Q 001162 630 SRLS--------------LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMD 695 (1134)
Q Consensus 630 s~l~--------------~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld 695 (1134)
..+. ....++++..+..+..........|++|||+|+|. ...++.|+..++
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS---------------~~afNALLKTLE 144 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS---------------KQAFNALLKTLE 144 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh---------------HHHHHHHhcccc
Confidence 2221 22334444433333333333455699999999985 244556666555
Q ss_pred HhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCC
Q 001162 696 EYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG 775 (1134)
Q Consensus 696 ~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG 775 (1134)
+-.. .|.+|.+|+.++.+++.+++ |.. ++.|...+.++....|...+.+.++.++++.+..++...+|
T Consensus 145 EPP~---------hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G 212 (515)
T COG2812 145 EPPS---------HVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG 212 (515)
T ss_pred cCcc---------CeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC
Confidence 5332 59999999999999999998 655 78899999999999999999999999999999999999998
Q ss_pred CChhhHHHHHHHHHHHH
Q 001162 776 YDAYDLEILVDRTVHAA 792 (1134)
Q Consensus 776 ~s~~DL~~Lv~~a~~~a 792 (1134)
+.||...+++.+....
T Consensus 213 -s~RDalslLDq~i~~~ 228 (515)
T COG2812 213 -SLRDALSLLDQAIAFG 228 (515)
T ss_pred -ChhhHHHHHHHHHHcc
Confidence 7899999999887543
No 245
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.22 E-value=1.5e-10 Score=135.04 Aligned_cols=198 Identities=21% Similarity=0.252 Sum_probs=127.7
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccc-cchhh-HHHHHHHHHHHH----hhcCCeEEEEcc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL-EKGPI-IRQALSNFISEA----LDHAPSIVIFDN 663 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~-~~~~~-~~~~l~~~f~~a----~~~~PsIL~IDE 663 (1134)
..++||+||||||||++|+++|+.++ .++..+++..+.. .+.+. ....+...+..+ ....++||||||
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~------~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDE 189 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILN------VPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDE 189 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcC------CCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecc
Confidence 46799999999999999999999886 5677788877652 23232 344455544432 234678999999
Q ss_pred cchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc----ccccccCCCcEEEEEecCCC--------------------
Q 001162 664 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE----KRKSSCGIGPIAFVASAQSL-------------------- 719 (1134)
Q Consensus 664 iD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~----~~~~~~~~~~V~vIattn~~-------------------- 719 (1134)
+|.+.+....+... ..-....+.+.|+.++++... .........+.++|.|+|-.
T Consensus 190 Idkl~~~~~~~s~~-~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~ 268 (413)
T TIGR00382 190 IDKISRKSENPSIT-RDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGK 268 (413)
T ss_pred cchhchhhcccccc-ccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhh
Confidence 99997532211110 000111355556666654321 11112222356777776651
Q ss_pred -------C-----------------------CCChhhccCCCccccccCCCCCHHHHHHHHHHH----hh---------h
Q 001162 720 -------E-----------------------KIPQSLTSSGRFDFHVQLPAPAASERKAILEHE----IQ---------R 756 (1134)
Q Consensus 720 -------~-----------------------~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~----l~---------~ 756 (1134)
+ -+.|.|. ||++.++.|.+.+.+++.+|+... ++ +
T Consensus 269 ~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~g 346 (413)
T TIGR00382 269 SSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDN 346 (413)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 0 0123333 499999999999999999998752 21 1
Q ss_pred cccCCCHHHHHHHhhh--cCCCChhhHHHHHHHHHHHHhccc
Q 001162 757 RSLECSDEILLDVASK--CDGYDAYDLEILVDRTVHAAVGRY 796 (1134)
Q Consensus 757 ~~l~~~~~~l~~la~~--teG~s~~DL~~Lv~~a~~~a~~r~ 796 (1134)
..+.++++++..|+.. ...|-+|.|+.++++.+...+...
T Consensus 347 i~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 347 VELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred eEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 2345789999999986 456778999999999988877765
No 246
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=2.8e-10 Score=140.20 Aligned_cols=189 Identities=21% Similarity=0.234 Sum_probs=129.4
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCce-----------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~----------- 620 (1134)
.|.++.|.+..+..+...+.. ...+.++||+||+|+|||++|+++|+.+......
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~--------------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALIS--------------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred cHhhccChHHHHHHHHHHHHc--------------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 466788888777776655432 1123569999999999999999999998642110
Q ss_pred ---------eeEEEEEecccccccchhhHHHHHHHHHHHHhh----cCCeEEEEcccchhccCCCCCCCCCCchhHHHHH
Q 001162 621 ---------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALD----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALT 687 (1134)
Q Consensus 621 ---------~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~----~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~ 687 (1134)
...++.++.. ...... .++++++.+.. ....|+||||+|.|.. ...
T Consensus 80 ~C~~i~~g~h~D~~ei~~~--~~~~vd----~IReii~~a~~~p~~~~~KViIIDEad~Lt~---------------~a~ 138 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDAA--SNTGVD----NIRELIERAQFAPVQARWKVYVIDECHMLST---------------AAF 138 (620)
T ss_pred HHHHHhcCCCccEEEEecc--ccCCHH----HHHHHHHHHhhChhcCCceEEEEECccccCH---------------HHH
Confidence 0123333322 112223 34445444432 2346999999998841 334
Q ss_pred HHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHH
Q 001162 688 KFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILL 767 (1134)
Q Consensus 688 ~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~ 767 (1134)
+.|+..+++... .+++|++|+.++.+.+.+++ |+. .+.|..++.++....+...+.+.++.++++.+.
T Consensus 139 naLLK~LEePp~---------~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~ 206 (620)
T PRK14948 139 NALLKTLEEPPP---------RVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALT 206 (620)
T ss_pred HHHHHHHhcCCc---------CeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 556666665332 36777777788888889988 764 788999999999998888888878889999999
Q ss_pred HHhhhcCCCChhhHHHHHHHH
Q 001162 768 DVASKCDGYDAYDLEILVDRT 788 (1134)
Q Consensus 768 ~la~~teG~s~~DL~~Lv~~a 788 (1134)
.++..+.| +.+++..+++..
T Consensus 207 ~La~~s~G-~lr~A~~lLekl 226 (620)
T PRK14948 207 LVAQRSQG-GLRDAESLLDQL 226 (620)
T ss_pred HHHHHcCC-CHHHHHHHHHHH
Confidence 99998887 457777776654
No 247
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=2.5e-10 Score=134.82 Aligned_cols=191 Identities=15% Similarity=0.214 Sum_probs=127.8
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCce-----------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~----------- 620 (1134)
+|.++.|.+..++.+...+.. ...+..+||+||||+|||++|+++|+.+......
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~--------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRM--------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred cHhhccChHHHHHHHHHHHHh--------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 567888888777766554421 1234569999999999999999999998642100
Q ss_pred ---------------eeEEEEEecccccccchhhHHHHHHHHHHHHh----hcCCeEEEEcccchhccCCCCCCCCCCch
Q 001162 621 ---------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPST 681 (1134)
Q Consensus 621 ---------------~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~----~~~PsIL~IDEiD~L~~~~~~~~~~~~~~ 681 (1134)
...+..++.... ... ..++++.+.+. .....|+||||+|.+..
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~~--~~i----d~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~------------ 141 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAASN--NSV----DDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI------------ 141 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeeccccc--CCH----HHHHHHHHHHhhchhcCCeEEEEEeChhhCCH------------
Confidence 011222222111 112 22334433332 12335999999999841
Q ss_pred hHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCC
Q 001162 682 SVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLEC 761 (1134)
Q Consensus 682 ~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~ 761 (1134)
.-.+.|+..++.... ..++|.+++....+.+.+++ |.. .++|++++.++..+.++..+...+..+
T Consensus 142 ---~~~~~LLk~LEep~~---------~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i 206 (397)
T PRK14955 142 ---AAFNAFLKTLEEPPP---------HAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISV 206 (397)
T ss_pred ---HHHHHHHHHHhcCCC---------CeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 123345555554322 25666666777788888887 665 899999999999999999888888889
Q ss_pred CHHHHHHHhhhcCCCChhhHHHHHHHHHH
Q 001162 762 SDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 762 ~~~~l~~la~~teG~s~~DL~~Lv~~a~~ 790 (1134)
+++.+..++..+.| +.+.+...++++..
T Consensus 207 ~~~al~~l~~~s~g-~lr~a~~~L~kl~~ 234 (397)
T PRK14955 207 DADALQLIGRKAQG-SMRDAQSILDQVIA 234 (397)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 99999999999887 67777777776653
No 248
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.21 E-value=1.6e-10 Score=132.75 Aligned_cols=136 Identities=20% Similarity=0.300 Sum_probs=89.2
Q ss_pred CCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc-ccccccCCCcEEEEEecC----CCCCCChhhccC
Q 001162 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE-KRKSSCGIGPIAFVASAQ----SLEKIPQSLTSS 729 (1134)
Q Consensus 655 ~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~-~~~~~~~~~~V~vIattn----~~~~Ld~aL~~~ 729 (1134)
+-+|+||||+|+|+...... + ..-....+.+.|+.++++-.- .........++.+|++.- .+.+|-|.|..
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~-~--~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G- 324 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSS-G--PDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG- 324 (443)
T ss_pred cCCEEEEEcchhhcccCCCC-C--CCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC-
Confidence 34699999999998643221 1 111223566677777765221 111123345788888753 35556677776
Q ss_pred CCccccccCCCCCHHHHHHHHH----HH-------hhhc--ccCCCHHHHHHHhhhc-------CCCChhhHHHHHHHHH
Q 001162 730 GRFDFHVQLPAPAASERKAILE----HE-------IQRR--SLECSDEILLDVASKC-------DGYDAYDLEILVDRTV 789 (1134)
Q Consensus 730 gRF~~~i~l~~P~~eeR~~IL~----~~-------l~~~--~l~~~~~~l~~la~~t-------eG~s~~DL~~Lv~~a~ 789 (1134)
||+.++.+.+++.++...||. .+ +... .+.++++.+..+|... ++.-+|-|..++++.+
T Consensus 325 -R~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L 403 (443)
T PRK05201 325 -RFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLL 403 (443)
T ss_pred -ccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 999999999999999999983 12 2222 3457888888877764 4556677888888887
Q ss_pred HHHhcc
Q 001162 790 HAAVGR 795 (1134)
Q Consensus 790 ~~a~~r 795 (1134)
...+..
T Consensus 404 ~d~~Fe 409 (443)
T PRK05201 404 EDISFE 409 (443)
T ss_pred HHHhcc
Confidence 776654
No 249
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=4e-10 Score=138.05 Aligned_cols=196 Identities=17% Similarity=0.222 Sum_probs=130.6
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCce-----------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~----------- 620 (1134)
+|.+++|.+..+..+.+.+.. ...+.++||+||+|+|||++|+.+|+.+......
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~--------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRM--------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 477888888877776554422 1234569999999999999999999998642110
Q ss_pred ---------------eeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHH
Q 001162 621 ---------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIA 685 (1134)
Q Consensus 621 ---------------~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~ 685 (1134)
...+..++.... ...+.++..+..+..........|+||||+|.+.. .
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s~--~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~---------------~ 142 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAASN--NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST---------------A 142 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEeccccc--CCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH---------------H
Confidence 011222222111 11233333222221111223345999999999841 2
Q ss_pred HHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHH
Q 001162 686 LTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEI 765 (1134)
Q Consensus 686 l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~ 765 (1134)
-.+.|+..+++... .+++|.+++..+.+.+.+++ |.. .++|.+++.++....+...+...++.++++.
T Consensus 143 a~naLLK~LEePp~---------~tv~IL~t~~~~kLl~TI~S--Rc~-~vef~~l~~~ei~~~L~~i~~~egi~I~~ea 210 (620)
T PRK14954 143 AFNAFLKTLEEPPP---------HAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLDEIQSQLQMICRAEGIQIDADA 210 (620)
T ss_pred HHHHHHHHHhCCCC---------CeEEEEEeCChhhhhHHHHh--hce-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 24556666666432 25666666777888888888 654 8999999999999999988888888899999
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHHH
Q 001162 766 LLDVASKCDGYDAYDLEILVDRTVHA 791 (1134)
Q Consensus 766 l~~la~~teG~s~~DL~~Lv~~a~~~ 791 (1134)
+..++..+.| +.+++...+++.+..
T Consensus 211 l~~La~~s~G-dlr~al~eLeKL~~y 235 (620)
T PRK14954 211 LQLIARKAQG-SMRDAQSILDQVIAF 235 (620)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHh
Confidence 9999999887 677777777766543
No 250
>PRK06620 hypothetical protein; Validated
Probab=99.20 E-value=2.5e-10 Score=123.12 Aligned_cols=146 Identities=17% Similarity=0.204 Sum_probs=102.6
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccC
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1134)
..++||||||||||+|++++++..+ . .++...... ...+ ....+|+|||+|.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~------~--~~~~~~~~~-----------~~~~-----~~~d~lliDdi~~~~-- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN------A--YIIKDIFFN-----------EEIL-----EKYNAFIIEDIENWQ-- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC------C--EEcchhhhc-----------hhHH-----hcCCEEEEeccccch--
Confidence 5699999999999999999988754 2 122211110 0111 234699999998541
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCC--CChhhccCCCcc--ccccCCCCCHHHH
Q 001162 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK--IPQSLTSSGRFD--FHVQLPAPAASER 746 (1134)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~--Ld~aL~~~gRF~--~~i~l~~P~~eeR 746 (1134)
...+...+....+. +..++++++..+.. + ++|++ |+. ..+.+.+|+.+++
T Consensus 99 ------------~~~lf~l~N~~~e~-----------g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~ 152 (214)
T PRK06620 99 ------------EPALLHIFNIINEK-----------QKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELI 152 (214)
T ss_pred ------------HHHHHHHHHHHHhc-----------CCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHH
Confidence 01344433333322 13567777666554 5 78888 765 3689999999999
Q ss_pred HHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 747 KAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 747 ~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
..++++.+..+++.++++++.+|+....| +.+.+..++++..
T Consensus 153 ~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~ 194 (214)
T PRK06620 153 KILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENIN 194 (214)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHH
Confidence 99999998888899999999999999887 7788888888754
No 251
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.20 E-value=3e-10 Score=140.38 Aligned_cols=238 Identities=17% Similarity=0.192 Sum_probs=139.7
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc----eeeEEEE
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVF 626 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~----~~~~~~~ 626 (1134)
.+|.++.|.+..+..+.+.+. .+.+.+++|+|||||||||+|+++++....... ...+++.
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia---------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVA---------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHh---------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 356788888888887665431 122467999999999999999999987632211 1356888
Q ss_pred Eecccccccch-------hhH----HHHHHHHHHH----------HhhcCCeEEEEcccchhccCCCCCCCCCCchhHHH
Q 001162 627 VCCSRLSLEKG-------PII----RQALSNFISE----------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIA 685 (1134)
Q Consensus 627 v~~s~l~~~~~-------~~~----~~~l~~~f~~----------a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~ 685 (1134)
++|..+..... +.. .......+.. ......++|||||++.|- ......
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-----------~~~Q~~ 284 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-----------PLLQNK 284 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-----------HHHHHH
Confidence 89877631100 000 0000111110 001235699999998873 122223
Q ss_pred HHHHHHHHHH-----Hhccccc----------cccCCCcEEEEEe-cCCCCCCChhhccCCCccccccCCCCCHHHHHHH
Q 001162 686 LTKFLVDIMD-----EYGEKRK----------SSCGIGPIAFVAS-AQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAI 749 (1134)
Q Consensus 686 l~~~L~~~ld-----~~~~~~~----------~~~~~~~V~vIat-tn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~I 749 (1134)
+...+.+..- .+..... .......+++|++ ++.++.++++|++ ||. .+.|++++.+++.+|
T Consensus 285 Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~I 361 (615)
T TIGR02903 285 LLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALI 361 (615)
T ss_pred HHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHH
Confidence 3333322100 0000000 0001123566654 4567889999998 886 678999999999999
Q ss_pred HHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhc
Q 001162 750 LEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1134)
Q Consensus 750 L~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1134)
++..+...++.++++.+..|+..+. .++...+.+..++..+..+.... ........++.+|+.+++..
T Consensus 362 l~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~---~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 362 VLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEA---GKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHh---ccCCCCeeECHHHHHHHhCC
Confidence 9999887777788998888888765 45555555555543332221100 01112346888998887643
No 252
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=5.1e-10 Score=138.24 Aligned_cols=194 Identities=17% Similarity=0.206 Sum_probs=129.4
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCce-----------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~----------- 620 (1134)
+|.+++|.+..++.+...+.. ...+..+||+||+|+|||++|+.+|+.+......
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~--------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAE--------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHh--------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 577888988888776554422 1223558999999999999999999998632110
Q ss_pred --------eeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHH
Q 001162 621 --------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (1134)
Q Consensus 621 --------~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~ 692 (1134)
...++.++.... ...+.++..+..+..........|+||||+|.|.. ...+.|+.
T Consensus 80 c~~i~~~~~~d~~~i~~~~~--~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~---------------~a~naLLk 142 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAASH--TSVDDAREIIERVQFRPALARYKVYIIDEVHMLST---------------AAFNALLK 142 (585)
T ss_pred HHHHhcCCCCeEEEEecccc--CCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH---------------HHHHHHHH
Confidence 012333333211 11223332222111111112346999999998841 23445566
Q ss_pred HHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhh
Q 001162 693 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 772 (1134)
Q Consensus 693 ~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~ 772 (1134)
.++.... .+++|.+++..+.+.+.+++ |+. .+.|+.++..+...++...+...++.++++.+..++..
T Consensus 143 ~LEepp~---------~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~ 210 (585)
T PRK14950 143 TLEEPPP---------HAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARA 210 (585)
T ss_pred HHhcCCC---------CeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 6665432 35666677777788888887 654 78899999999999999998888888999999999998
Q ss_pred cCCCChhhHHHHHHHHH
Q 001162 773 CDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 773 teG~s~~DL~~Lv~~a~ 789 (1134)
+.| +.+++.+.+++..
T Consensus 211 s~G-dlr~al~~LekL~ 226 (585)
T PRK14950 211 ATG-SMRDAENLLQQLA 226 (585)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 887 7888888777654
No 253
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.18 E-value=1.7e-10 Score=131.62 Aligned_cols=157 Identities=21% Similarity=0.310 Sum_probs=102.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc-------CC--cEEEEe
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-------SL--RFISVK 910 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~-------~~--~~i~i~ 910 (1134)
+..|.+|.|++++++.|.-....+ ...|+||+|+||||||++|+++|..+ +. ++..+.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~-------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhcc-------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 467899999999999887544321 12489999999999999999999988 33 222211
Q ss_pred C-ccc--------ch---------------hccccc--HHH--------HHHHHHHhhhcCCeEEEEcCcccccCCCCCC
Q 001162 911 G-PEL--------LN---------------KYIGAS--EQA--------VRDIFSKATAAAPCLLFFDEFDSIAPKRGHD 956 (1134)
Q Consensus 911 ~-~el--------~~---------------~~~G~s--e~~--------v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~ 956 (1134)
+ +++ .. ..+|.. +.. -...+..|.+ .+||+||++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~---GiL~lDEInrl------- 140 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANR---GYLYIDEVNLL------- 140 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCC---CeEEecChHhC-------
Confidence 1 011 00 011210 000 0111112222 39999999998
Q ss_pred CCcchhhHHHhHhhhccccc-----------ccccEEEEEecCCCC-ccchhhcCcCcccceeecCCCCH-HHHHHHHHH
Q 001162 957 NTGVTDRVVNQFLTELDGVE-----------VLTGVFVFAATSRPD-LLDAALLRPGRLDRLLFCDFPSP-RERLDILKV 1023 (1134)
Q Consensus 957 ~~~~~~rv~~~lL~~ld~~~-----------~~~~v~vIatTn~p~-~ld~allrpgRfd~~i~~~~p~~-~er~~Il~~ 1023 (1134)
...+.+.|+..|+.-. ...++++++|+|..+ .+.++++. ||...+.+++|.. ++|.+|++.
T Consensus 141 ----~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~ 214 (334)
T PRK13407 141 ----EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRR 214 (334)
T ss_pred ----CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 4567777777775321 123588888888544 48899999 9999999998876 899999987
Q ss_pred HH
Q 001162 1024 IS 1025 (1134)
Q Consensus 1024 ~~ 1025 (1134)
..
T Consensus 215 ~~ 216 (334)
T PRK13407 215 RD 216 (334)
T ss_pred hh
Confidence 53
No 254
>PRK08727 hypothetical protein; Validated
Probab=99.18 E-value=5.3e-10 Score=122.47 Aligned_cols=177 Identities=20% Similarity=0.237 Sum_probs=109.0
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCC
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH 955 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~ 955 (1134)
..++|+||+|||||+++.+++.++ +...+.++..++.. .+.+.++... ...+|+|||++.+.....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCChH-
Confidence 359999999999999999998764 55666666554332 2334454443 336999999998864321
Q ss_pred CCCcchhhHHHhHhhhcccccccccEEEEEecCCCCc---cchhhcCcCcc--cceeecCCCCHHHHHHHHHHHHccCCC
Q 001162 956 DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRL--DRLLFCDFPSPRERLDILKVISRKLPL 1030 (1134)
Q Consensus 956 ~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~---ld~allrpgRf--d~~i~~~~p~~~er~~Il~~~~~~~~~ 1030 (1134)
.. ..+...++.....+.-+|+++...|.. +++.+.+ || ...+.+++|+.+++.+|++.++...++
T Consensus 111 -----~~---~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l 180 (233)
T PRK08727 111 -----DE---VALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGL 180 (233)
T ss_pred -----HH---HHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCC
Confidence 11 122233332222233355544455665 4799998 76 567799999999999999987765444
Q ss_pred C-CcccHHHHHHhccCCcHHHHHHH---HHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhh
Q 001162 1031 A-DDVDLEAIAHMTEGFSGADLQAL---LSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASK 1092 (1134)
Q Consensus 1031 ~-~~vd~~~La~~t~g~sg~dl~~l---~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~ 1092 (1134)
. ++..++.|+..+. +|++.+ +......+... ...||.+.+++.+..
T Consensus 181 ~l~~e~~~~La~~~~----rd~r~~l~~L~~l~~~~~~~------------~~~it~~~~~~~l~~ 230 (233)
T PRK08727 181 ALDEAAIDWLLTHGE----RELAGLVALLDRLDRESLAA------------KRRVTVPFLRRVLEE 230 (233)
T ss_pred CCCHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHh------------CCCCCHHHHHHHHhh
Confidence 2 2333566666654 455444 33222111111 135899988888754
No 255
>PRK05642 DNA replication initiation factor; Validated
Probab=99.18 E-value=3.6e-10 Score=123.88 Aligned_cols=179 Identities=20% Similarity=0.205 Sum_probs=114.3
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCC
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH 955 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~ 955 (1134)
.+++||||+|||||+|++++++++ +..++.++..++...+ ..+.+..+.. .+|+|||++.+..+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~~-- 113 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQY--ELVCLDDLDVIAGKA-- 113 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhhC--CEEEEechhhhcCCh--
Confidence 568999999999999999999764 6788888888775421 2233333333 599999999885431
Q ss_pred CCCcchhhHHHhHhhhcccccccccEEEEEecCCCCc---cchhhcCcCcc--cceeecCCCCHHHHHHHHHHHHccCCC
Q 001162 956 DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRL--DRLLFCDFPSPRERLDILKVISRKLPL 1030 (1134)
Q Consensus 956 ~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~---ld~allrpgRf--d~~i~~~~p~~~er~~Il~~~~~~~~~ 1030 (1134)
....+|...++.....++.+|++++..|.. ..|.|.+ || ..++.+.+|+.+++..|++..+...++
T Consensus 114 -------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~ 184 (234)
T PRK05642 114 -------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGL 184 (234)
T ss_pred -------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCC
Confidence 112234444444444556777777766654 4688988 77 466778999999999999966655443
Q ss_pred C-CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHh
Q 001162 1031 A-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIAS 1091 (1134)
Q Consensus 1031 ~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~ 1091 (1134)
. ++.-.+.|+...+ -+++.+..++..-...++. ....||...+++++.
T Consensus 185 ~l~~ev~~~L~~~~~-~d~r~l~~~l~~l~~~~l~------------~~~~it~~~~~~~L~ 233 (234)
T PRK05642 185 HLTDEVGHFILTRGT-RSMSALFDLLERLDQASLQ------------AQRKLTIPFLKETLG 233 (234)
T ss_pred CCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH------------cCCcCCHHHHHHHhc
Confidence 2 2333566666655 2455555544422211111 123588888887763
No 256
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.17 E-value=4.8e-10 Score=117.60 Aligned_cols=173 Identities=22% Similarity=0.281 Sum_probs=128.8
Q ss_pred cccccCCCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEE
Q 001162 832 TKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFIS 908 (1134)
Q Consensus 832 ~~~~~~~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~ 908 (1134)
....+....+.+.+|.|.+.++++|.+....... -.+..++||+|..||||+++++|+-+++ |..+++
T Consensus 48 L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~---------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVE 118 (287)
T COG2607 48 LEPVPDPDPIDLADLVGVDRQKEALVRNTEQFAE---------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVE 118 (287)
T ss_pred ccCCCCCCCcCHHHHhCchHHHHHHHHHHHHHHc---------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEE
Confidence 3344555568899999999999999877654321 1356689999999999999999999887 678999
Q ss_pred EeCcccchhcccccHHHHHHHHHHhhhc-CCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccc-c-ccccEEEEE
Q 001162 909 VKGPELLNKYIGASEQAVRDIFSKATAA-APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV-E-VLTGVFVFA 985 (1134)
Q Consensus 909 i~~~el~~~~~G~se~~v~~lf~~A~~~-~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~-~-~~~~v~vIa 985 (1134)
|+..++.. +-.+++..+.. .+-|||+|++- .+..+..+..|-..|||- + ...+|+|.|
T Consensus 119 V~k~dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLS----------Fe~gd~~yK~LKs~LeG~ve~rP~NVl~YA 179 (287)
T COG2607 119 VDKEDLAT---------LPDLVELLRARPEKFILFCDDLS----------FEEGDDAYKALKSALEGGVEGRPANVLFYA 179 (287)
T ss_pred EcHHHHhh---------HHHHHHHHhcCCceEEEEecCCC----------CCCCchHHHHHHHHhcCCcccCCCeEEEEE
Confidence 99988743 44555554432 24599999862 233455666777777763 2 346899999
Q ss_pred ecCCCCccchhhc--------------------CcCcccceeecCCCCHHHHHHHHHHHHccCCCCC
Q 001162 986 ATSRPDLLDAALL--------------------RPGRLDRLLFCDFPSPRERLDILKVISRKLPLAD 1032 (1134)
Q Consensus 986 tTn~p~~ld~all--------------------rpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~ 1032 (1134)
|+||.+.+...+. -..||+-.+.|++++.++.+.|+..++++.+++-
T Consensus 180 TSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 180 TSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred ecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 9999776542111 1239999999999999999999999999988753
No 257
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.16 E-value=5.5e-10 Score=128.85 Aligned_cols=196 Identities=18% Similarity=0.277 Sum_probs=142.7
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccC
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1134)
..++||||.|+|||+|+++++.+...... .+.++++..+.+........+..-.+-|.+-+ .-.+|+|||++.+.++
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~~~~~-~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEALANGP-NARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHhhCC-CceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 45999999999999999999998754332 35688888877766555555444445555555 4469999999998642
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCC---ChhhccCCCcc--ccccCCCCCHHH
Q 001162 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI---PQSLTSSGRFD--FHVQLPAPAASE 745 (1134)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L---d~aL~~~gRF~--~~i~l~~P~~ee 745 (1134)
. .....++..|..+.+.- .-+++.+...|..+ .+.|++ ||. ..+.+.+|+.+.
T Consensus 191 ~---------~~qeefFh~FN~l~~~~-----------kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~ 248 (408)
T COG0593 191 E---------RTQEEFFHTFNALLENG-----------KQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDET 248 (408)
T ss_pred h---------hHHHHHHHHHHHHHhcC-----------CEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHH
Confidence 1 12346666666654431 23555555666654 588999 776 467999999999
Q ss_pred HHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhccc
Q 001162 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (1134)
Q Consensus 746 R~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~ 824 (1134)
|..||+..+...++.++++++..++..... +.++|..++++....+.... ..+|.+...+++....
T Consensus 249 r~aiL~kka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~~~~------------~~iTi~~v~e~L~~~~ 314 (408)
T COG0593 249 RLAILRKKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFALFTK------------RAITIDLVKEILKDLL 314 (408)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcC------------ccCcHHHHHHHHHHhh
Confidence 999999999999999999999999998776 78899988888877665431 2466666666665543
No 258
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.16 E-value=6.9e-10 Score=132.49 Aligned_cols=190 Identities=16% Similarity=0.283 Sum_probs=118.8
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc-----CCcEEEEeCcccchhcccccH---HHHHHHHHHhhhcCCeEEEEcCccccc
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASE---QAVRDIFSKATAAAPCLLFFDEFDSIA 950 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~-----~~~~i~i~~~el~~~~~G~se---~~v~~lf~~A~~~~P~VLfiDEid~l~ 950 (1134)
.+++|||++|||||+|++++++++ +..++.+++.++...+...-. ..+..+.+.. ..+.+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEecccccc
Confidence 469999999999999999999865 478899999988776653321 1222222222 345799999999885
Q ss_pred CCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCc---cchhhcCcCccc--ceeecCCCCHHHHHHHHHHHH
Q 001162 951 PKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRLD--RLLFCDFPSPRERLDILKVIS 1025 (1134)
Q Consensus 951 ~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~---ld~allrpgRfd--~~i~~~~p~~~er~~Il~~~~ 1025 (1134)
.+ ......|...++.....++.+|+++...|.. +++.|.+ ||. -.+.+.+|+.++|..|++..+
T Consensus 220 ~k---------~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~ 288 (450)
T PRK14087 220 YK---------EKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEI 288 (450)
T ss_pred CC---------HHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHH
Confidence 32 1223344444443334444555544444544 5788888 774 667889999999999999988
Q ss_pred ccCCCCCccc---HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhh
Q 001162 1026 RKLPLADDVD---LEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASK 1092 (1134)
Q Consensus 1026 ~~~~~~~~vd---~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~ 1092 (1134)
+..++...++ ++.|+....| +.+.+..+|......+.... ....||.+.+.++++.
T Consensus 289 ~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~----------~~~~it~~~v~~~l~~ 347 (450)
T PRK14087 289 KNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNP----------EEKIITIEIVSDLFRD 347 (450)
T ss_pred HhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhccc----------CCCCCCHHHHHHHHhh
Confidence 7655321233 4555555553 45666666655443332210 0124666666666654
No 259
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.16 E-value=1.4e-09 Score=119.71 Aligned_cols=66 Identities=23% Similarity=0.433 Sum_probs=52.4
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcC--CcEEEEeCcccch
Q 001162 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPELLN 916 (1134)
Q Consensus 843 ~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~--~~~i~i~~~el~~ 916 (1134)
-+-++|+.+++++.--.+... +.+....+++|+.||||||||.||-++|+++| .||+.++++++++
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mi--------k~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS 105 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMI--------KQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYS 105 (450)
T ss_pred CCcccchHHHHHhhhHHHHHH--------HhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeee
Confidence 345889999998765554431 23445567999999999999999999999996 7999999988754
No 260
>PRK09087 hypothetical protein; Validated
Probab=99.15 E-value=2.7e-10 Score=123.87 Aligned_cols=171 Identities=18% Similarity=0.246 Sum_probs=113.7
Q ss_pred eEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCC
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSS 671 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~ 671 (1134)
.++|+||+|+|||+|++++++..+ ..+++...+.... +.... ..+|+|||+|.+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~--------~~~i~~~~~~~~~-----------~~~~~---~~~l~iDDi~~~~~-- 101 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSD--------ALLIHPNEIGSDA-----------ANAAA---EGPVLIEDIDAGGF-- 101 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcC--------CEEecHHHcchHH-----------HHhhh---cCeEEEECCCCCCC--
Confidence 499999999999999999998653 2355544322211 11111 14899999997620
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCC---CChhhccCCCcc--ccccCCCCCHHHH
Q 001162 672 SDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAASER 746 (1134)
Q Consensus 672 ~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~---Ld~aL~~~gRF~--~~i~l~~P~~eeR 746 (1134)
. ...++..+....+. + ..++++++..+.. ..+.|++ ||. ..+++.+|+.++|
T Consensus 102 -------~---~~~lf~l~n~~~~~----g-------~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~ 158 (226)
T PRK09087 102 -------D---ETGLFHLINSVRQA----G-------TSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALL 158 (226)
T ss_pred -------C---HHHHHHHHHHHHhC----C-------CeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHH
Confidence 0 12444444333322 1 2466666555443 3578888 764 6889999999999
Q ss_pred HHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhc
Q 001162 747 KAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1134)
Q Consensus 747 ~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1134)
.+|++..+...++.++++++.+|+....| +.+.+..++++....+... ...++...+.+++..
T Consensus 159 ~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~------------~~~it~~~~~~~l~~ 221 (226)
T PRK09087 159 SQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALER------------KSRITRALAAEVLNE 221 (226)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHh------------CCCCCHHHHHHHHHh
Confidence 99999999998999999999999999886 5666666666655444322 133666666666554
No 261
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1e-09 Score=135.36 Aligned_cols=191 Identities=19% Similarity=0.208 Sum_probs=134.7
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCC-------------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK------------- 618 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~------------- 618 (1134)
+|.++.|.+...+.+...+.. ...+..+|||||+|+|||++|+.+|+.+....
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~--------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIAT--------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 477888888888877776532 12345589999999999999999999985321
Q ss_pred ------ceeeEEEEEecccccccchhhHHHHHHHHHHHHhh----cCCeEEEEcccchhccCCCCCCCCCCchhHHHHHH
Q 001162 619 ------DLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTK 688 (1134)
Q Consensus 619 ------~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~----~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~ 688 (1134)
.....+..++++.- .... .++.++..+.. ....|++|||+|.|.. ...+
T Consensus 81 C~~~~~~~~~n~~~ld~~~~--~~vd----~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~---------------~a~n 139 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAASN--NSVD----DIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ---------------AAFN 139 (614)
T ss_pred HHHHhcCCCCceEEeccccc--CCHH----HHHHHHHHHhhCcccCCcEEEEEECcccCCH---------------HHHH
Confidence 00123444444321 1122 34444444421 2235999999999841 3355
Q ss_pred HHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHH
Q 001162 689 FLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLD 768 (1134)
Q Consensus 689 ~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~ 768 (1134)
.|+..++.... ..++|.+|+....+.+.+++ |.. .+.|.+++.++....++..+...++.++++.+..
T Consensus 140 aLLK~LEepp~---------~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~ 207 (614)
T PRK14971 140 AFLKTLEEPPS---------YAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNV 207 (614)
T ss_pred HHHHHHhCCCC---------CeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 67777776543 35677777777889999998 754 7999999999999999999988899999999999
Q ss_pred HhhhcCCCChhhHHHHHHHHHH
Q 001162 769 VASKCDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 769 la~~teG~s~~DL~~Lv~~a~~ 790 (1134)
++..+.| +.+++..++++.+.
T Consensus 208 La~~s~g-dlr~al~~Lekl~~ 228 (614)
T PRK14971 208 IAQKADG-GMRDALSIFDQVVS 228 (614)
T ss_pred HHHHcCC-CHHHHHHHHHHHHH
Confidence 9998876 67777777776543
No 262
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=1.3e-09 Score=125.75 Aligned_cols=191 Identities=15% Similarity=0.123 Sum_probs=126.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC-------cEEEE---
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL-------RFISV--- 909 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~-------~~i~i--- 909 (1134)
+..++++.|++++.+.+...+... +.+..+||+||+|+|||++|+.+|+.+.. +....
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 568899999999999999987642 33446999999999999999999998744 11000
Q ss_pred -eC-----------cccc---hhc--------ccccHHHHHHHHHHh----hhcCCeEEEEcCcccccCCCCCCCCcchh
Q 001162 910 -KG-----------PELL---NKY--------IGASEQAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDNTGVTD 962 (1134)
Q Consensus 910 -~~-----------~el~---~~~--------~G~se~~v~~lf~~A----~~~~P~VLfiDEid~l~~~r~~~~~~~~~ 962 (1134)
.| +++. ..+ .+-+-+.+|++.+.. ..+...|++|||+|.| ..
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-----------~~ 155 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-----------NR 155 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----------CH
Confidence 00 1111 000 001124455544432 3345679999999998 45
Q ss_pred hHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHh
Q 001162 963 RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHM 1042 (1134)
Q Consensus 963 rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~ 1042 (1134)
...|.||+.|+. +..++++|..|+.|+.+.|.+++ |+ ..+.|++|+.++..++++......+++ +.....+++.
T Consensus 156 ~aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~i~~~ 229 (351)
T PRK09112 156 NAANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEALLQR 229 (351)
T ss_pred HHHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHHHHHH
Confidence 577889999984 44556666667889898899988 77 588999999999999998743322221 2235566777
Q ss_pred ccCCcHHHHHHHHHHHHH
Q 001162 1043 TEGFSGADLQALLSDAQL 1060 (1134)
Q Consensus 1043 t~g~sg~dl~~l~~~A~~ 1060 (1134)
+.|-.+ ...+++..+..
T Consensus 230 s~G~pr-~Al~ll~~~~~ 246 (351)
T PRK09112 230 SKGSVR-KALLLLNYGGL 246 (351)
T ss_pred cCCCHH-HHHHHHhcCcH
Confidence 765444 33344444443
No 263
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.14 E-value=1.2e-09 Score=121.94 Aligned_cols=139 Identities=17% Similarity=0.257 Sum_probs=89.1
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc------ccccchhhH-HHHHHH-----------------
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR------LSLEKGPII-RQALSN----------------- 646 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~------l~~~~~~~~-~~~l~~----------------- 646 (1134)
.++||+||||||||++|+++|+.++ .+++.++|.. +.+.+.+.. ...+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg------~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRD------RPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWV 95 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC------CCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeec
Confidence 6799999999999999999999876 6677787754 222211100 001111
Q ss_pred --HHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----ccc---ccccCCCcEEEEEecC
Q 001162 647 --FISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKR---KSSCGIGPIAFVASAQ 717 (1134)
Q Consensus 647 --~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~---~~~~~~~~V~vIattn 717 (1134)
.+..|. ..+.+|+|||++.+-+ .....|...++... ... .......++.+|+|+|
T Consensus 96 ~g~l~~A~-~~g~~lllDEi~r~~~---------------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN 159 (262)
T TIGR02640 96 DNRLTLAV-REGFTLVYDEFTRSKP---------------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSN 159 (262)
T ss_pred CchHHHHH-HcCCEEEEcchhhCCH---------------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeC
Confidence 111122 2356999999998631 34445555554321 000 0011223678999999
Q ss_pred CCC-----CCChhhccCCCccccccCCCCCHHHHHHHHHHHh
Q 001162 718 SLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEI 754 (1134)
Q Consensus 718 ~~~-----~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l 754 (1134)
+.. .++++|.+ ||. .+.++.|+.++-.+|++..+
T Consensus 160 ~~~~~g~~~l~~aL~~--R~~-~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 160 PVEYAGVHETQDALLD--RLI-TIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred CccccceecccHHHHh--hcE-EEECCCCCHHHHHHHHHHhh
Confidence 753 56888998 884 88999999999999998764
No 264
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.14 E-value=3.5e-10 Score=112.98 Aligned_cols=120 Identities=38% Similarity=0.514 Sum_probs=82.7
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhcccccHHH---HHHHHHHhhhcCCeEEEEcCcccccC
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQA---VRDIFSKATAAAPCLLFFDEFDSIAP 951 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~~G~se~~---v~~lf~~A~~~~P~VLfiDEid~l~~ 951 (1134)
..+++++||||||||++++.++..+ +.+++.+++.+....+....... ....+..+....+.+|+|||++.+.+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 4579999999999999999999998 88999999987655433221111 12223344456678999999998721
Q ss_pred CCCCCCCcchhhHHHhHhhhcccccc----cccEEEEEecCCCC--ccchhhcCcCcccceeecC
Q 001162 952 KRGHDNTGVTDRVVNQFLTELDGVEV----LTGVFVFAATSRPD--LLDAALLRPGRLDRLLFCD 1010 (1134)
Q Consensus 952 ~r~~~~~~~~~rv~~~lL~~ld~~~~----~~~v~vIatTn~p~--~ld~allrpgRfd~~i~~~ 1010 (1134)
.....++..+..... ..++.+|++|+... .+++.+.+ ||+..+.++
T Consensus 99 -----------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 99 -----------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred -----------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 223344444433322 35688888888876 67788887 998777775
No 265
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.13 E-value=2.7e-10 Score=128.11 Aligned_cols=139 Identities=19% Similarity=0.269 Sum_probs=98.1
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchh--cccccHHH----------HHHHHHHhhhcCCeEEEEcC
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK--YIGASEQA----------VRDIFSKATAAAPCLLFFDE 945 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~--~~G~se~~----------v~~lf~~A~~~~P~VLfiDE 945 (1134)
.+++||.||||||||++|+.+|..++.+++.+++...+.. ++|...-. ....+..|.. .+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4689999999999999999999999999999998765554 44532110 1123344433 357899999
Q ss_pred cccccCCCCCCCCcchhhHHHhHhhh-----c-c---cccccccEEEEEecCCCCc------------cchhhcCcCccc
Q 001162 946 FDSIAPKRGHDNTGVTDRVVNQFLTE-----L-D---GVEVLTGVFVFAATSRPDL------------LDAALLRPGRLD 1004 (1134)
Q Consensus 946 id~l~~~r~~~~~~~~~rv~~~lL~~-----l-d---~~~~~~~v~vIatTn~p~~------------ld~allrpgRfd 1004 (1134)
+++.-+. ...+++.+|.. + + .+.....+.||||.|..+. ++.|++. ||-
T Consensus 143 in~a~p~--------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~ 212 (327)
T TIGR01650 143 YDAGRPD--------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--RWS 212 (327)
T ss_pred hhccCHH--------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--hee
Confidence 9987443 22333334331 1 1 1123346889999997651 6889999 999
Q ss_pred ceeecCCCCHHHHHHHHHHHHcc
Q 001162 1005 RLLFCDFPSPRERLDILKVISRK 1027 (1134)
Q Consensus 1005 ~~i~~~~p~~~er~~Il~~~~~~ 1027 (1134)
.++.++.|+.++-.+|++.....
T Consensus 213 i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 213 IVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred eEeeCCCCCHHHHHHHHHhhccC
Confidence 88899999999999999876543
No 266
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.12 E-value=8.2e-10 Score=121.24 Aligned_cols=184 Identities=19% Similarity=0.300 Sum_probs=114.4
Q ss_pred eEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhh-----cCCeEEEEcccch
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD-----HAPSIVIFDNLDS 666 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~-----~~PsIL~IDEiD~ 666 (1134)
.++|+||||||||+|||.|+....... ..++.+++..-. .+.++++|+.+.. ....||||||+|.
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~S---yrfvelSAt~a~-------t~dvR~ife~aq~~~~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHS---YRFVELSATNAK-------TNDVRDIFEQAQNEKSLTKRKTILFIDEIHR 233 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCc---eEEEEEeccccc-------hHHHHHHHHHHHHHHhhhcceeEEEeHHhhh
Confidence 499999999999999999999765322 345555443321 2335666666643 3567999999999
Q ss_pred hccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCC--CCCCChhhccCCCccccccCCCCCHH
Q 001162 667 IISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS--LEKIPQSLTSSGRFDFHVQLPAPAAS 744 (1134)
Q Consensus 667 L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~--~~~Ld~aL~~~gRF~~~i~l~~P~~e 744 (1134)
+-. .+ ...|+-..+ .|.|.+|++|+. .-.++.+|.+ |.. +|.+.....+
T Consensus 234 FNk----sQ-----------QD~fLP~VE-----------~G~I~lIGATTENPSFqln~aLlS--RC~-VfvLekL~~n 284 (554)
T KOG2028|consen 234 FNK----SQ-----------QDTFLPHVE-----------NGDITLIGATTENPSFQLNAALLS--RCR-VFVLEKLPVN 284 (554)
T ss_pred hhh----hh-----------hhcccceec-----------cCceEEEecccCCCccchhHHHHh--ccc-eeEeccCCHH
Confidence 841 00 112322222 135888888754 3357888888 543 7889999999
Q ss_pred HHHHHHHHHhh-----hc---c-----cCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcccccCCCcccccccccc
Q 001162 745 ERKAILEHEIQ-----RR---S-----LECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTL 811 (1134)
Q Consensus 745 eR~~IL~~~l~-----~~---~-----l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~l 811 (1134)
....||.+-+. .+ + +.+++.++++++..++|-..+.| +.++-+......|.. ...+..+
T Consensus 285 ~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aL-N~Lems~~m~~tr~g-------~~~~~~l 356 (554)
T KOG2028|consen 285 AVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAAL-NALEMSLSMFCTRSG-------QSSRVLL 356 (554)
T ss_pred HHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHH-HHHHHHHHHHHhhcC-------Cccccee
Confidence 99999987443 11 1 12566789999999999544333 333333222222311 1123457
Q ss_pred chhhhHhhhhc
Q 001162 812 VRDDFSQAMHE 822 (1134)
Q Consensus 812 t~eDf~~Al~~ 822 (1134)
+.+|....+..
T Consensus 357 SidDvke~lq~ 367 (554)
T KOG2028|consen 357 SIDDVKEGLQR 367 (554)
T ss_pred cHHHHHHHHhh
Confidence 77787766643
No 267
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=4.7e-09 Score=121.86 Aligned_cols=180 Identities=19% Similarity=0.212 Sum_probs=123.4
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC---------------
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~--------------- 904 (1134)
+..+++|.|++++++.|...+... +.+..+||+||+|+||+++|.++|+.+-.
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 568899999999999999887642 34456999999999999999999987621
Q ss_pred -------------------cEEEEeCc--ccchhc-ccccHHHHHHHHHHh----hhcCCeEEEEcCcccccCCCCCCCC
Q 001162 905 -------------------RFISVKGP--ELLNKY-IGASEQAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDNT 958 (1134)
Q Consensus 905 -------------------~~i~i~~~--el~~~~-~G~se~~v~~lf~~A----~~~~P~VLfiDEid~l~~~r~~~~~ 958 (1134)
.++.+... +--.+. ..-.-+.+|++.+.+ ..+.|.|++|||+|.+
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m--------- 153 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM--------- 153 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc---------
Confidence 01111110 000000 001234566666554 3456789999999988
Q ss_pred cchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHH
Q 001162 959 GVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEA 1038 (1134)
Q Consensus 959 ~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~ 1038 (1134)
.....|.||+.++ +...++++|.+|+.++.+.+.+++ |+ ..+.|++|+.++..+++...... ..+..+..
T Consensus 154 --~~~aanaLLK~LE--epp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~~~ 223 (365)
T PRK07471 154 --NANAANALLKVLE--EPPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPRAA 223 (365)
T ss_pred --CHHHHHHHHHHHh--cCCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCHHHHHH
Confidence 4568889999997 444567777789999999899888 66 47799999999998888764321 11222346
Q ss_pred HHHhccCCcHHH
Q 001162 1039 IAHMTEGFSGAD 1050 (1134)
Q Consensus 1039 La~~t~g~sg~d 1050 (1134)
++..+.|-.+.-
T Consensus 224 l~~~s~Gsp~~A 235 (365)
T PRK07471 224 LAALAEGSVGRA 235 (365)
T ss_pred HHHHcCCCHHHH
Confidence 677776654433
No 268
>PHA02244 ATPase-like protein
Probab=99.12 E-value=3.5e-09 Score=120.32 Aligned_cols=124 Identities=27% Similarity=0.336 Sum_probs=80.1
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCc----ccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCC
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGP----ELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKR 953 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~----el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r 953 (1134)
+.++||+||||||||++|+++|..++.+|+.++.. ++.+ +++....-...-|-+|. ....+|||||++.+.+.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p~- 195 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAF-KKGGLFFIDEIDASIPE- 195 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHh-hcCCEEEEeCcCcCCHH-
Confidence 35799999999999999999999999999999853 1111 11111111111222222 23469999999987432
Q ss_pred CCCCCcchhhHHHhHhhhcc--------c-ccccccEEEEEecCCC-----------CccchhhcCcCcccceeecCCCC
Q 001162 954 GHDNTGVTDRVVNQFLTELD--------G-VEVLTGVFVFAATSRP-----------DLLDAALLRPGRLDRLLFCDFPS 1013 (1134)
Q Consensus 954 ~~~~~~~~~rv~~~lL~~ld--------~-~~~~~~v~vIatTn~p-----------~~ld~allrpgRfd~~i~~~~p~ 1013 (1134)
+...|...++ + +....++.+|+|+|.+ ..++++++. ||- .++|+.|+
T Consensus 196 ----------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~ 262 (383)
T PHA02244 196 ----------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDE 262 (383)
T ss_pred ----------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCc
Confidence 2333333332 1 1223568899999973 348999999 995 68999998
Q ss_pred HHHH
Q 001162 1014 PRER 1017 (1134)
Q Consensus 1014 ~~er 1017 (1134)
..+.
T Consensus 263 ~~E~ 266 (383)
T PHA02244 263 KIEH 266 (383)
T ss_pred HHHH
Confidence 5443
No 269
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.12 E-value=9.9e-10 Score=130.31 Aligned_cols=208 Identities=15% Similarity=0.218 Sum_probs=141.3
Q ss_pred cCCCCCCCCCCCChhHHHHHHHHHHhcCC-----------------CchhHHhh----CCCCCCCceEEEcCCCCchhHH
Q 001162 836 AEGGRSGWDDVGGLTDIQNAIKEMIELPS-----------------KFPNIFAQ----APLRLRSNVLLYGPPGCGKTHI 894 (1134)
Q Consensus 836 ~~~~~~~~~~i~gl~~~k~~l~~~i~~~~-----------------~~~~~~~~----~~~~~~~~vLL~GppGtGKT~l 894 (1134)
.++.+..|.|+.|-+.+-+.+..++..-- ...+++.. .+.++.+-+||+||||-|||||
T Consensus 263 dky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTL 342 (877)
T KOG1969|consen 263 DKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTL 342 (877)
T ss_pred cccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHH
Confidence 34455678888888888777766665210 00111111 1112234588999999999999
Q ss_pred HHHHHHHcCCcEEEEeCcccchhcccccHHHHHHHHHHh--------hhcCCeEEEEcCcccccCCCCCCCCcchhhHHH
Q 001162 895 VGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKA--------TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVN 966 (1134)
Q Consensus 895 A~alA~~~~~~~i~i~~~el~~~~~G~se~~v~~lf~~A--------~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~ 966 (1134)
|+.+|+.+|..+++||+++= .+...++..+..| ....|.+|++||||-- ...+++
T Consensus 343 AHViAkqaGYsVvEINASDe------Rt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa-----------~~~~Vd 405 (877)
T KOG1969|consen 343 AHVIAKQAGYSVVEINASDE------RTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA-----------PRAAVD 405 (877)
T ss_pred HHHHHHhcCceEEEeccccc------ccHHHHHHHHHHHHhhccccccCCCcceEEEecccCC-----------cHHHHH
Confidence 99999999999999999983 3445555555544 2367999999999854 245566
Q ss_pred hHhhhccc-------cccc---------c---cEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHcc
Q 001162 967 QFLTELDG-------VEVL---------T---GVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRK 1027 (1134)
Q Consensus 967 ~lL~~ld~-------~~~~---------~---~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~ 1027 (1134)
.++..+.. -... . ..-|||.+|.. .-|+|+.---|..+++|++|...-..+=|+.++..
T Consensus 406 vilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~r 483 (877)
T KOG1969|consen 406 VILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHR 483 (877)
T ss_pred HHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCChhHHHHHHHHHHhh
Confidence 66665541 1110 0 13466777853 34666532258899999999999998889988887
Q ss_pred CCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHH
Q 001162 1028 LPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHE 1065 (1134)
Q Consensus 1028 ~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~ 1065 (1134)
.++ .+|...|+..++ ++..||++.++.-++.|...
T Consensus 484 E~m--r~d~~aL~~L~e-l~~~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 484 ENM--RADSKALNALCE-LTQNDIRSCINTLQFLASNV 518 (877)
T ss_pred hcC--CCCHHHHHHHHH-HhcchHHHHHHHHHHHHHhc
Confidence 776 456677777777 77789999888888776643
No 270
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.12 E-value=3.5e-09 Score=111.21 Aligned_cols=197 Identities=20% Similarity=0.237 Sum_probs=139.1
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s 630 (1134)
..+..|.|.+.+.+.+.+....++. ..|..+|||+|..|||||+|+|++..+++.... ..+.|+-+
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~-----------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl---rLVEV~k~ 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAE-----------GLPANNVLLWGARGTGKSSLVKALLNEYADEGL---RLVEVDKE 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHc-----------CCcccceEEecCCCCChHHHHHHHHHHHHhcCC---eEEEEcHH
Confidence 4577899999999999988766654 455688999999999999999999999875543 36777666
Q ss_pred cccccchhhHHHHHHHHHHHHhh-cCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 631 RLSLEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~-~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
++.. +-.+++..+. ...-|||+||+- + .++. .-...|...+++-.... +.+
T Consensus 123 dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLS-F------e~gd-------~~yK~LKs~LeG~ve~r-----P~N 174 (287)
T COG2607 123 DLAT---------LPDLVELLRARPEKFILFCDDLS-F------EEGD-------DAYKALKSALEGGVEGR-----PAN 174 (287)
T ss_pred HHhh---------HHHHHHHHhcCCceEEEEecCCC-C------CCCc-------hHHHHHHHHhcCCcccC-----CCe
Confidence 6543 3334444433 345699999982 2 1111 22445666666543322 347
Q ss_pred EEEEEecCCCCCCChhhc--------------------cCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHH--
Q 001162 710 IAFVASAQSLEKIPQSLT--------------------SSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILL-- 767 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~--------------------~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~-- 767 (1134)
|++.+|+|+.+.|+..+. =+.||...+.|.++++++-.+|+..+++..++.++++.+.
T Consensus 175 Vl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~e 254 (287)
T COG2607 175 VLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAE 254 (287)
T ss_pred EEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 999999998766542221 1239999999999999999999999999999988876544
Q ss_pred --HHhhhcCCCChhhHHHHHHHHH
Q 001162 768 --DVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 768 --~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
..|....|-+|+-..++++...
T Consensus 255 Al~WAt~rg~RSGR~A~QF~~~~~ 278 (287)
T COG2607 255 ALQWATTRGGRSGRVAWQFIRDLA 278 (287)
T ss_pred HHHHHHhcCCCccHhHHHHHHHHH
Confidence 3455557778877666666543
No 271
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.11 E-value=7.6e-10 Score=117.28 Aligned_cols=143 Identities=17% Similarity=0.229 Sum_probs=99.1
Q ss_pred CCCceEEEcCCCCchhHHHHHHHHHcCCc------------------------EEEEeCcccchhcccccHHHHHHHHHH
Q 001162 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLR------------------------FISVKGPELLNKYIGASEQAVRDIFSK 932 (1134)
Q Consensus 877 ~~~~vLL~GppGtGKT~lA~alA~~~~~~------------------------~i~i~~~el~~~~~G~se~~v~~lf~~ 932 (1134)
.+..+||+||+|+|||++|+++|+.+... +..+.... . ....+.++++.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHH
Confidence 34569999999999999999999987431 22222110 0 0123566666766
Q ss_pred hhh----cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceee
Q 001162 933 ATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLF 1008 (1134)
Q Consensus 933 A~~----~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~ 1008 (1134)
+.. +.+.|++|||+|.+ .....+.|+..|+. ..+.+++|.+|+.++.+.+++.+ |+ ..+.
T Consensus 88 ~~~~~~~~~~kviiide~~~l-----------~~~~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~i~s--r~-~~~~ 151 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERM-----------NEAAANALLKTLEE--PPPNTLFILITPSPEKLLPTIRS--RC-QVLP 151 (188)
T ss_pred HccCcccCCeEEEEEechhhh-----------CHHHHHHHHHHhcC--CCCCeEEEEEECChHhChHHHHh--hc-EEee
Confidence 643 44579999999998 33467788988875 33456666667778889999998 66 4889
Q ss_pred cCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccC
Q 001162 1009 CDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEG 1045 (1134)
Q Consensus 1009 ~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g 1045 (1134)
|++|+.++..++++.. +++ +..++.++..+.|
T Consensus 152 ~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 152 FPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred CCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 9999999998888776 332 3335556665554
No 272
>PRK06620 hypothetical protein; Validated
Probab=99.10 E-value=7.2e-10 Score=119.58 Aligned_cols=164 Identities=12% Similarity=0.132 Sum_probs=100.9
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCC
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNT 958 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~ 958 (1134)
..++||||||||||+|++++++..+..++. .... . .+.+ ....+|+|||+|.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-------~----~~~~-----~~~d~lliDdi~~~--------- 97 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-------N----EEIL-----EKYNAFIIEDIENW--------- 97 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-------c----hhHH-----hcCCEEEEeccccc---------
Confidence 569999999999999999999988754322 1100 0 1111 12369999999954
Q ss_pred cchhhHHHhHhhhcccccccccEEEEEecCCCCc--cchhhcCcCccc--ceeecCCCCHHHHHHHHHHHHccCCCC-Cc
Q 001162 959 GVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL--LDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRKLPLA-DD 1033 (1134)
Q Consensus 959 ~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~--ld~allrpgRfd--~~i~~~~p~~~er~~Il~~~~~~~~~~-~~ 1033 (1134)
.+. .+...++.+...++.++++++..|.. + |+|++ |+. .++.+.+|+.+.+..+++..+...++. ++
T Consensus 98 --~~~---~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ 169 (214)
T PRK06620 98 --QEP---ALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISR 169 (214)
T ss_pred --hHH---HHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 111 22222222233455777777766655 6 88888 775 467899999999999998887654442 23
Q ss_pred ccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHH
Q 001162 1034 VDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIA 1090 (1134)
Q Consensus 1034 vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al 1090 (1134)
.-.+.|+....| +.+.+.+++......+. . ....||.+.+++++
T Consensus 170 ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~----~--------~~~~it~~~~~~~l 213 (214)
T PRK06620 170 QIIDFLLVNLPR-EYSKIIEILENINYFAL----I--------SKRKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHHccC-CHHHHHHHHHHHHHHHH----H--------cCCCCCHHHHHHHh
Confidence 336667776653 34444444443211111 0 11358888888775
No 273
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.10 E-value=4.6e-10 Score=126.27 Aligned_cols=141 Identities=15% Similarity=0.202 Sum_probs=92.7
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccc------cccchhhHH------HHHHHHHHHHhhcCCe
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL------SLEKGPIIR------QALSNFISEALDHAPS 657 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l------~~~~~~~~~------~~l~~~f~~a~~~~Ps 657 (1134)
.+++||.||||||||++++.+|+.++ .+++.++|... .|...-..+ ......+-.|. ..+.
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~------~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~ 136 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLN------WPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNV 136 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHC------CCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCe
Confidence 47799999999999999999999998 66667766543 332211000 00011222222 3567
Q ss_pred EEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHH-----hccccccccCCCcEEEEEecCCCC------------
Q 001162 658 IVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE-----YGEKRKSSCGIGPIAFVASAQSLE------------ 720 (1134)
Q Consensus 658 IL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~-----~~~~~~~~~~~~~V~vIattn~~~------------ 720 (1134)
+|++||+|..-+ .....|..+++. +...........++.+|||+|+.+
T Consensus 137 illlDEin~a~p---------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~ 201 (327)
T TIGR01650 137 ALCFDEYDAGRP---------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQ 201 (327)
T ss_pred EEEechhhccCH---------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeee
Confidence 899999998631 233444445542 111112222334799999999855
Q ss_pred CCChhhccCCCccccccCCCCCHHHHHHHHHHHh
Q 001162 721 KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEI 754 (1134)
Q Consensus 721 ~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l 754 (1134)
.++++++. ||...+.+..|+.++-.+|+....
T Consensus 202 ~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 202 QINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred cCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 36888888 998788999999999999997654
No 274
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.09 E-value=8e-10 Score=119.78 Aligned_cols=165 Identities=20% Similarity=0.319 Sum_probs=106.5
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc-----CCcEEEEeCcccchhcccccH-HHHHHHHHHhhhcCCeEEEEcCcccccCC
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASE-QAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~-----~~~~i~i~~~el~~~~~G~se-~~v~~lf~~A~~~~P~VLfiDEid~l~~~ 952 (1134)
..++||||+|+|||+|.++++++. +..++.+++.++...+..... ..+.++.+..+ ...+|+||+++.+..+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc
Confidence 358999999999999999999875 578999999888766543221 11222333333 3469999999998532
Q ss_pred CCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCc---cchhhcCcCcccc--eeecCCCCHHHHHHHHHHHHcc
Q 001162 953 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRLDR--LLFCDFPSPRERLDILKVISRK 1027 (1134)
Q Consensus 953 r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~---ld~allrpgRfd~--~i~~~~p~~~er~~Il~~~~~~ 1027 (1134)
.+....+...++.+...++.+|+++...|.. +++.|.+ ||.. .+.+.+|+.+.|..|++..++.
T Consensus 113 ---------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~ 181 (219)
T PF00308_consen 113 ---------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKE 181 (219)
T ss_dssp ---------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHH
Confidence 2344555555555555666777766666665 5778888 7654 7788999999999999998887
Q ss_pred CCCCC-cccHHHHHHhccCCcHHHHHHHHHH
Q 001162 1028 LPLAD-DVDLEAIAHMTEGFSGADLQALLSD 1057 (1134)
Q Consensus 1028 ~~~~~-~vd~~~La~~t~g~sg~dl~~l~~~ 1057 (1134)
.++.- +.-.+.|+.... -+.++|..++..
T Consensus 182 ~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~ 211 (219)
T PF00308_consen 182 RGIELPEEVIEYLARRFR-RDVRELEGALNR 211 (219)
T ss_dssp TT--S-HHHHHHHHHHTT-SSHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHhhc-CCHHHHHHHHHH
Confidence 76652 222555666654 356666665553
No 275
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=1.9e-09 Score=123.50 Aligned_cols=172 Identities=17% Similarity=0.273 Sum_probs=120.6
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC--------cEEEEeCcc
Q 001162 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------RFISVKGPE 913 (1134)
Q Consensus 842 ~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~--------~~i~i~~~e 913 (1134)
.|+++.|++.+++.+...+... +.+..+||+||+|+|||++|+++|+.+.. .++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 4789999999999998887531 33456899999999999999999997632 233332210
Q ss_pred cchhcccccHHHHHHHHHHhh----hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCC
Q 001162 914 LLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSR 989 (1134)
Q Consensus 914 l~~~~~G~se~~v~~lf~~A~----~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~ 989 (1134)
++. -+-+.+|++.+.+. .+...|++||++|.+ .....|.||+.|+ ++.+++++|.+|+.
T Consensus 70 --~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----------~~~a~naLLK~LE--epp~~t~~il~~~~ 132 (313)
T PRK05564 70 --KKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----------TEQAQNAFLKTIE--EPPKGVFIILLCEN 132 (313)
T ss_pred --CCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhc-----------CHHHHHHHHHHhc--CCCCCeEEEEEeCC
Confidence 111 12345777776442 344579999999988 4567889999998 45566666667788
Q ss_pred CCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcH
Q 001162 990 PDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSG 1048 (1134)
Q Consensus 990 p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg 1048 (1134)
++.+-|.+++ |+ ..+.|++|+.++....++..... + ...+.+.++..+.|-.+
T Consensus 133 ~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 133 LEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDGIPG 185 (313)
T ss_pred hHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCCCHH
Confidence 9999999998 55 48899999999988877655432 2 22334556666665443
No 276
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.07 E-value=3.2e-09 Score=116.90 Aligned_cols=130 Identities=17% Similarity=0.193 Sum_probs=98.1
Q ss_pred CCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCC------------CCCC
Q 001162 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS------------LEKI 722 (1134)
Q Consensus 655 ~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~------------~~~L 722 (1134)
-|+||||||+|.|- -..+.+|.+.|+.-.. | ++|.+||+ |+-+
T Consensus 291 VpGVLFIDEvHmLD---------------IE~FsFlnrAlEse~a---------P-Iii~AtNRG~~kiRGTd~~sPhGI 345 (450)
T COG1224 291 VPGVLFIDEVHMLD---------------IECFSFLNRALESELA---------P-IIILATNRGMTKIRGTDIESPHGI 345 (450)
T ss_pred ecceEEEechhhhh---------------HHHHHHHHHHhhcccC---------c-EEEEEcCCceeeecccCCcCCCCC
Confidence 38899999999873 2556777777764221 3 45555553 5567
Q ss_pred ChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcccccCCCc
Q 001162 723 PQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSS 802 (1134)
Q Consensus 723 d~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~ 802 (1134)
|..|.. |+- ++...+++.++..+|++..+....+.+++++++.++.....-+-+..-+|+.-|...|..|
T Consensus 346 P~DlLD--Rll-II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r------- 415 (450)
T COG1224 346 PLDLLD--RLL-IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR------- 415 (450)
T ss_pred CHhhhh--hee-EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh-------
Confidence 788777 664 7888999999999999999999999999999999999888878887778877777666655
Q ss_pred cccccccccchhhhHhhhhcc
Q 001162 803 FEKHIKPTLVRDDFSQAMHEF 823 (1134)
Q Consensus 803 ~~~~~~~~lt~eDf~~Al~~~ 823 (1134)
+...+..+|...|.+-|
T Consensus 416 ----g~~~V~~~dVe~a~~lF 432 (450)
T COG1224 416 ----GSKRVEVEDVERAKELF 432 (450)
T ss_pred ----CCCeeehhHHHHHHHHH
Confidence 23457778887776544
No 277
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.06 E-value=8.5e-10 Score=114.70 Aligned_cols=184 Identities=18% Similarity=0.224 Sum_probs=114.6
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc-C----CcEEEEeC
Q 001162 837 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-S----LRFISVKG 911 (1134)
Q Consensus 837 ~~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~-~----~~~i~i~~ 911 (1134)
++.+..+.||+|.++..+.|.-..... .-.+++|.||||||||+.+.++|+++ | -.+.++|+
T Consensus 20 KYrP~~l~dIVGNe~tv~rl~via~~g-------------nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNA 86 (333)
T KOG0991|consen 20 KYRPSVLQDIVGNEDTVERLSVIAKEG-------------NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNA 86 (333)
T ss_pred hhCchHHHHhhCCHHHHHHHHHHHHcC-------------CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccC
Confidence 345678899999999999987765531 22389999999999999999999987 3 35677888
Q ss_pred cccchhcccccHHHHHHHHHHhhh----cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEec
Q 001162 912 PELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT 987 (1134)
Q Consensus 912 ~el~~~~~G~se~~v~~lf~~A~~----~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatT 987 (1134)
++=.+ +. .-+.--..|.+-+- +...|+++||+|++. ..+...|-..|+-.....+ |..++
T Consensus 87 SdeRG--ID-vVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT-----------~gAQQAlRRtMEiyS~ttR--FalaC 150 (333)
T KOG0991|consen 87 SDERG--ID-VVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT-----------AGAQQALRRTMEIYSNTTR--FALAC 150 (333)
T ss_pred ccccc--cH-HHHHHHHHHHHhhccCCCCceeEEEeeccchhh-----------hHHHHHHHHHHHHHcccch--hhhhh
Confidence 76322 11 11122234443322 223599999999983 3455566666764443333 44477
Q ss_pred CCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHH
Q 001162 988 SRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLS 1056 (1134)
Q Consensus 988 n~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~ 1056 (1134)
|..+.|-..+.+ |+. .+.|...+..+.+.-+....+..++. .+-.++.+...++| |++..++
T Consensus 151 N~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQalN 213 (333)
T KOG0991|consen 151 NQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQALN 213 (333)
T ss_pred cchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHHH
Confidence 888886666666 333 33444446666655555555443332 23346777766664 6655444
No 278
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.06 E-value=1.7e-09 Score=123.68 Aligned_cols=156 Identities=21% Similarity=0.290 Sum_probs=104.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcC-------CcEEEEeC-
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-------LRFISVKG- 911 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~-------~~~i~i~~- 911 (1134)
...|.+|+|++++|..|......| ...|+||.|++|||||++|++++..+. .+|. ..+
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~ 78 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPS 78 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCC
Confidence 357899999999999998876654 224899999999999999999988662 2222 000
Q ss_pred -cc-----cchh---------------c----ccccHHHH------HHH------------HHHhhhcCCeEEEEcCccc
Q 001162 912 -PE-----LLNK---------------Y----IGASEQAV------RDI------------FSKATAAAPCLLFFDEFDS 948 (1134)
Q Consensus 912 -~e-----l~~~---------------~----~G~se~~v------~~l------------f~~A~~~~P~VLfiDEid~ 948 (1134)
++ +... + .|.++..+ ... +.+|.+ .+||+||++.
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~---GiL~lDEInr 155 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANR---GILYVDEVNL 155 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCC---CEEEecChHh
Confidence 00 0000 0 12233221 111 222222 4999999999
Q ss_pred ccCCCCCCCCcchhhHHHhHhhhccc----cc-------ccccEEEEEecCCCC-ccchhhcCcCcccceeecCCCC-HH
Q 001162 949 IAPKRGHDNTGVTDRVVNQFLTELDG----VE-------VLTGVFVFAATSRPD-LLDAALLRPGRLDRLLFCDFPS-PR 1015 (1134)
Q Consensus 949 l~~~r~~~~~~~~~rv~~~lL~~ld~----~~-------~~~~v~vIatTn~p~-~ld~allrpgRfd~~i~~~~p~-~~ 1015 (1134)
+. ..+.+.|+..|+. ++ ...++++++|.|..+ .+.++++. ||...+.+..|+ .+
T Consensus 156 L~-----------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~ 222 (350)
T CHL00081 156 LD-----------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPE 222 (350)
T ss_pred CC-----------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChH
Confidence 83 4566667776643 11 123577777777544 38999999 999999999997 69
Q ss_pred HHHHHHHHHH
Q 001162 1016 ERLDILKVIS 1025 (1134)
Q Consensus 1016 er~~Il~~~~ 1025 (1134)
++.+|++...
T Consensus 223 ~e~~il~~~~ 232 (350)
T CHL00081 223 LRVKIVEQRT 232 (350)
T ss_pred HHHHHHHhhh
Confidence 9999998754
No 279
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.03 E-value=2.4e-09 Score=113.39 Aligned_cols=150 Identities=20% Similarity=0.204 Sum_probs=98.2
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhccCCc------------------eeeEEEEEecccccccchhhHHHHHHHHHHH
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------------LVAHIVFVCCSRLSLEKGPIIRQALSNFISE 650 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~~~~~------------------~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~ 650 (1134)
.+..+||+||+|+|||++++.+++.+..... ....+..+....- .... ..++++.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~-~~~~----~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ-SIKV----DQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccC-cCCH----HHHHHHHHH
Confidence 3466999999999999999999999853200 0001222221110 1112 234444444
Q ss_pred Hhh----cCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhh
Q 001162 651 ALD----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSL 726 (1134)
Q Consensus 651 a~~----~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL 726 (1134)
+.. ....|++|||+|.+.. ...+.|+..++.... ...+|.+++.+..+.+++
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~---------------~~~~~Ll~~le~~~~---------~~~~il~~~~~~~l~~~i 143 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNE---------------AAANALLKTLEEPPP---------NTLFILITPSPEKLLPTI 143 (188)
T ss_pred HccCcccCCeEEEEEechhhhCH---------------HHHHHHHHHhcCCCC---------CeEEEEEECChHhChHHH
Confidence 332 3456999999999841 223445555655322 256666677778899999
Q ss_pred ccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCC
Q 001162 727 TSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGY 776 (1134)
Q Consensus 727 ~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~ 776 (1134)
++ |+. .++|++|+.++..+++... + ++++.+..++..+.|.
T Consensus 144 ~s--r~~-~~~~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 144 RS--RCQ-VLPFPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGS 184 (188)
T ss_pred Hh--hcE-EeeCCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCC
Confidence 98 764 8999999999999998775 3 6778888888888773
No 280
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3.4e-09 Score=115.11 Aligned_cols=128 Identities=23% Similarity=0.374 Sum_probs=89.7
Q ss_pred CCChhHHHHHHHHHHhcCCCchhHHhhCC---C-CCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccch-hccc
Q 001162 846 VGGLTDIQNAIKEMIELPSKFPNIFAQAP---L-RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIG 920 (1134)
Q Consensus 846 i~gl~~~k~~l~~~i~~~~~~~~~~~~~~---~-~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~-~~~G 920 (1134)
++|++.+|+.|.-.+... |..+..... . -..+++||.||+|||||+||+.+|+.++.||..-++..|-. .|+|
T Consensus 63 VIGQe~AKKvLsVAVYNH--YKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNH--YKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred eecchhhhceeeeeehhH--HHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 678888888876554422 222221111 1 12358999999999999999999999999999999888754 7999
Q ss_pred cc-HHHHHHHHHHh----hhcCCeEEEEcCcccccCCCCCCC---CcchhhHHHhHhhhcccc
Q 001162 921 AS-EQAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGV 975 (1134)
Q Consensus 921 ~s-e~~v~~lf~~A----~~~~P~VLfiDEid~l~~~r~~~~---~~~~~rv~~~lL~~ld~~ 975 (1134)
+. |..+.++++.| ..+...|++|||||+++.+..+.+ .-...-+...||+.++|-
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 87 44455666555 233445999999999987643322 222456778899999873
No 281
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.03 E-value=2.1e-10 Score=119.13 Aligned_cols=114 Identities=23% Similarity=0.308 Sum_probs=79.6
Q ss_pred CCCceEEEcCCCCchhHHHHHHHHHcCC----cEEEEeCcccchhcccccHHHHHHHHHHh----hhcCCeEEEEcCccc
Q 001162 877 LRSNVLLYGPPGCGKTHIVGAAAAACSL----RFISVKGPELLNKYIGASEQAVRDIFSKA----TAAAPCLLFFDEFDS 948 (1134)
Q Consensus 877 ~~~~vLL~GppGtGKT~lA~alA~~~~~----~~i~i~~~el~~~~~G~se~~v~~lf~~A----~~~~P~VLfiDEid~ 948 (1134)
|...+||+||+|||||.+|+++|+.+.. +++.++++++... ++.+..+..++..+ ......||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4567999999999999999999999996 9999999988651 11122223333222 111113999999999
Q ss_pred ccCCCCCCCCcchhhHHHhHhhhccccc---------ccccEEEEEecCCCCc
Q 001162 949 IAPKRGHDNTGVTDRVVNQFLTELDGVE---------VLTGVFVFAATSRPDL 992 (1134)
Q Consensus 949 l~~~r~~~~~~~~~rv~~~lL~~ld~~~---------~~~~v~vIatTn~p~~ 992 (1134)
+.++.+.........+.+.||+.||+-. ..++++||+|+|--..
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 9886444444445678899999887421 2457999999997655
No 282
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.03 E-value=3.4e-09 Score=121.29 Aligned_cols=155 Identities=19% Similarity=0.248 Sum_probs=100.6
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc-------CCcEE-------
Q 001162 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-------SLRFI------- 907 (1134)
Q Consensus 842 ~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~-------~~~~i------- 907 (1134)
.|..|+|++++|..|.-.+..| ...|++|.|+||+|||+++++++..+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 3678999999999886665543 13589999999999999999999877 22221
Q ss_pred --EEeC-------------------cccc-----hhcccccH--HH--------HHHHHHHhhhcCCeEEEEcCcccccC
Q 001162 908 --SVKG-------------------PELL-----NKYIGASE--QA--------VRDIFSKATAAAPCLLFFDEFDSIAP 951 (1134)
Q Consensus 908 --~i~~-------------------~el~-----~~~~G~se--~~--------v~~lf~~A~~~~P~VLfiDEid~l~~ 951 (1134)
..+| .++- +...|... .. -..++.+|.+ .+||+||++.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~---GvL~lDEi~~L-- 143 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANR---GILYIDEVNLL-- 143 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccC---CEEEecChHhC--
Confidence 0000 0110 01222210 00 0122223333 49999999998
Q ss_pred CCCCCCCcchhhHHHhHhhhcccc----c-------ccccEEEEEecCCCC-ccchhhcCcCcccceeecCCCCH-HHHH
Q 001162 952 KRGHDNTGVTDRVVNQFLTELDGV----E-------VLTGVFVFAATSRPD-LLDAALLRPGRLDRLLFCDFPSP-RERL 1018 (1134)
Q Consensus 952 ~r~~~~~~~~~rv~~~lL~~ld~~----~-------~~~~v~vIatTn~p~-~ld~allrpgRfd~~i~~~~p~~-~er~ 1018 (1134)
...+.+.|+..|+.- . ...++++++|+|..+ .+.++++. ||...+.++.|.. ++|.
T Consensus 144 ---------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~ 212 (337)
T TIGR02030 144 ---------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRV 212 (337)
T ss_pred ---------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHH
Confidence 345667777776421 1 123578888777544 48899999 9999999998875 8899
Q ss_pred HHHHHHH
Q 001162 1019 DILKVIS 1025 (1134)
Q Consensus 1019 ~Il~~~~ 1025 (1134)
+|++...
T Consensus 213 eIL~~~~ 219 (337)
T TIGR02030 213 EIVERRT 219 (337)
T ss_pred HHHHhhh
Confidence 9998743
No 283
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.02 E-value=2.3e-09 Score=111.55 Aligned_cols=179 Identities=18% Similarity=0.256 Sum_probs=121.6
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~ 631 (1134)
.+.+++|-+..++.+. ..... ... .|++|.|||||||||-+.++|++|- +....-.+..+++++
T Consensus 25 ~l~dIVGNe~tv~rl~----via~~----------gnm-P~liisGpPG~GKTTsi~~LAr~LL-G~~~ke~vLELNASd 88 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLS----VIAKE----------GNM-PNLIISGPPGTGKTTSILCLARELL-GDSYKEAVLELNASD 88 (333)
T ss_pred HHHHhhCCHHHHHHHH----HHHHc----------CCC-CceEeeCCCCCchhhHHHHHHHHHh-ChhhhhHhhhccCcc
Confidence 3567788877766543 22211 122 3599999999999999999999874 221223466677777
Q ss_pred ccccchhhHHHHHHHHHHHHhhcC---CeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCC
Q 001162 632 LSLEKGPIIRQALSNFISEALDHA---PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1134)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a~~~~---PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1134)
-.| .+..+..++.+-+.-..-. -.|+++||+|++.. ...+.|.+.|+-+...
T Consensus 89 eRG--IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~---------------gAQQAlRRtMEiyS~t-------- 143 (333)
T KOG0991|consen 89 ERG--IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA---------------GAQQALRRTMEIYSNT-------- 143 (333)
T ss_pred ccc--cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh---------------HHHHHHHHHHHHHccc--------
Confidence 554 3445555544333222222 24999999999862 3345677777776543
Q ss_pred cEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCC
Q 001162 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG 775 (1134)
Q Consensus 709 ~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG 775 (1134)
..+..+||..+.+-+.+.+ |.. .+.+...+..+...-|....+..++.++++.++.+.-..+|
T Consensus 144 -tRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G 206 (333)
T KOG0991|consen 144 -TRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG 206 (333)
T ss_pred -chhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc
Confidence 4677788888888777777 654 66777778888777777777778888999999988877777
No 284
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.02 E-value=2.3e-09 Score=124.83 Aligned_cols=124 Identities=19% Similarity=0.364 Sum_probs=80.5
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHcCC-------cEEEEeC----cccchhc----cccc--HHHHHHHHHHhhh--cCC
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAACSL-------RFISVKG----PELLNKY----IGAS--EQAVRDIFSKATA--AAP 938 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~~~-------~~i~i~~----~el~~~~----~G~s--e~~v~~lf~~A~~--~~P 938 (1134)
..+++|+||||||||++|+.+|..+.. .++.+.. .+++..+ .|.. ...+.+++..|+. ..|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 358999999999999999999998743 1233322 2333222 1211 1234556667754 357
Q ss_pred eEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccc--------------------ccccccEEEEEecCCCC----ccc
Q 001162 939 CLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDG--------------------VEVLTGVFVFAATSRPD----LLD 994 (1134)
Q Consensus 939 ~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~--------------------~~~~~~v~vIatTn~p~----~ld 994 (1134)
+||||||+++... ++++.++++.|+. +.-..+++||||+|..| .+|
T Consensus 274 ~vliIDEINRani----------~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD 343 (459)
T PRK11331 274 YVFIIDEINRANL----------SKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVD 343 (459)
T ss_pred cEEEEehhhccCH----------HHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhcc
Confidence 9999999998643 3444444444441 22335799999999988 599
Q ss_pred hhhcCcCcccceeecCC-CCH
Q 001162 995 AALLRPGRLDRLLFCDF-PSP 1014 (1134)
Q Consensus 995 ~allrpgRfd~~i~~~~-p~~ 1014 (1134)
.||+| ||.. |.+.+ ++.
T Consensus 344 ~AlrR--RF~f-i~i~p~~~~ 361 (459)
T PRK11331 344 YALRR--RFSF-IDIEPGFDT 361 (459)
T ss_pred HHHHh--hhhe-EEecCCCCh
Confidence 99999 9964 44433 443
No 285
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.02 E-value=1.7e-08 Score=112.97 Aligned_cols=195 Identities=19% Similarity=0.259 Sum_probs=117.0
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc------------ccc----ccchhhHHHHHHHHHH-HHhh
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS------------RLS----LEKGPIIRQALSNFIS-EALD 653 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s------------~l~----~~~~~~~~~~l~~~f~-~a~~ 653 (1134)
+.++|+||+|+|||++++.+++.+....... ...+++. .+. +.........+...+. ....
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~--~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~ 121 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVA--AKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAA 121 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEE--eeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 4589999999999999999999876322111 1111111 000 0000111122333222 2334
Q ss_pred cCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCC--CCCC----Chhhc
Q 001162 654 HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS--LEKI----PQSLT 727 (1134)
Q Consensus 654 ~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~--~~~L----d~aL~ 727 (1134)
..+.+|+|||+|.+.. .....+..+.+. ..... ..+.++.+... .+.+ ...+.
T Consensus 122 ~~~~vliiDe~~~l~~---------------~~~~~l~~l~~~-~~~~~-----~~~~vvl~g~~~~~~~l~~~~~~~l~ 180 (269)
T TIGR03015 122 GKRALLVVDEAQNLTP---------------ELLEELRMLSNF-QTDNA-----KLLQIFLVGQPEFRETLQSPQLQQLR 180 (269)
T ss_pred CCCeEEEEECcccCCH---------------HHHHHHHHHhCc-ccCCC-----CeEEEEEcCCHHHHHHHcCchhHHHH
Confidence 5678999999998731 112222222211 11010 12333444332 1111 12344
Q ss_pred cCCCccccccCCCCCHHHHHHHHHHHhhhcc----cCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcccccCCCcc
Q 001162 728 SSGRFDFHVQLPAPAASERKAILEHEIQRRS----LECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSF 803 (1134)
Q Consensus 728 ~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~----l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~ 803 (1134)
+ |+...+++++++.++..+++...+...+ ..++++.+..++..+.|+ ++.+..+++.+...+..+
T Consensus 181 ~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~-------- 249 (269)
T TIGR03015 181 Q--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLE-------- 249 (269)
T ss_pred h--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHc--------
Confidence 4 7777889999999999999998876543 357889999999999996 567999999998887654
Q ss_pred ccccccccchhhhHhhhhc
Q 001162 804 EKHIKPTLVRDDFSQAMHE 822 (1134)
Q Consensus 804 ~~~~~~~lt~eDf~~Al~~ 822 (1134)
+...++.+++..++..
T Consensus 250 ---~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 250 ---EKREIGGEEVREVIAE 265 (269)
T ss_pred ---CCCCCCHHHHHHHHHH
Confidence 2245888888877654
No 286
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=2.1e-09 Score=122.45 Aligned_cols=181 Identities=16% Similarity=0.236 Sum_probs=125.2
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCc----------EEEEeC
Q 001162 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR----------FISVKG 911 (1134)
Q Consensus 842 ~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~----------~i~i~~ 911 (1134)
.|++|.|++.+++.+...+... +.+.++||+||+|+||+++|.++|+.+-.. +...+-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 4789999999999999988642 344589999999999999999999876211 111222
Q ss_pred cccc---------hh--------ccc--------ccHHHHHHHHHHhh----hcCCeEEEEcCcccccCCCCCCCCcchh
Q 001162 912 PELL---------NK--------YIG--------ASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTD 962 (1134)
Q Consensus 912 ~el~---------~~--------~~G--------~se~~v~~lf~~A~----~~~P~VLfiDEid~l~~~r~~~~~~~~~ 962 (1134)
+|+. ++ ..| -.-+.+|++.+.+. .+...|++||++|.+ ..
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----------~~ 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----------NE 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----------CH
Confidence 2322 00 011 01235666655542 345679999999998 45
Q ss_pred hHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHh
Q 001162 963 RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHM 1042 (1134)
Q Consensus 963 rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~ 1042 (1134)
...|.||+.|+.. . +.++|..|+.++.+-|.+++ |+ ..+.|++++.++..++++........ +.+...++..
T Consensus 139 ~aaNaLLK~LEEP--p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~~~ 210 (314)
T PRK07399 139 AAANALLKTLEEP--G-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELLAL 210 (314)
T ss_pred HHHHHHHHHHhCC--C-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHHHH
Confidence 6789999999843 3 34556677889999999999 55 57899999999999999876432111 2235778888
Q ss_pred ccCCcHHHHHH
Q 001162 1043 TEGFSGADLQA 1053 (1134)
Q Consensus 1043 t~g~sg~dl~~ 1053 (1134)
+.|-.+.-+..
T Consensus 211 a~Gs~~~al~~ 221 (314)
T PRK07399 211 AQGSPGAAIAN 221 (314)
T ss_pred cCCCHHHHHHH
Confidence 88765555443
No 287
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2e-09 Score=132.09 Aligned_cols=166 Identities=25% Similarity=0.378 Sum_probs=122.1
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc----------CCcEEEEe
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~----------~~~~i~i~ 910 (1134)
..++.++|-++-.+++.+.+.... ..+-+|.|+||+|||.++..+|... +..++.++
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR~-------------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRRT-------------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhccC-------------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 467888887776666666655432 2367899999999999999999865 56788888
Q ss_pred Ccccch--hcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecC
Q 001162 911 GPELLN--KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATS 988 (1134)
Q Consensus 911 ~~el~~--~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn 988 (1134)
.+.+.. +|-|+.|.+++.+++......+.||||||+|.+.+..+... + .-.+-|-|--.| ....+-+||||.
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNiLKPaL----ARGeL~~IGATT 307 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANLLKPAL----ARGELRCIGATT 307 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhhhHHHH----hcCCeEEEEecc
Confidence 888864 79999999999999999888899999999999987543322 1 122223332222 233355556665
Q ss_pred CCCc-----cchhhcCcCcccceeecCCCCHHHHHHHHHHHHccC
Q 001162 989 RPDL-----LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL 1028 (1134)
Q Consensus 989 ~p~~-----ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~ 1028 (1134)
.-+. -|+||-| ||.. |.+..|+.++-..||+.+..++
T Consensus 308 ~~EYRk~iEKD~AL~R--RFQ~-V~V~EPs~e~ti~ILrGlk~~y 349 (786)
T COG0542 308 LDEYRKYIEKDAALER--RFQK-VLVDEPSVEDTIAILRGLKERY 349 (786)
T ss_pred HHHHHHHhhhchHHHh--cCce-eeCCCCCHHHHHHHHHHHHHHH
Confidence 3222 6999999 9974 5899999999999998765544
No 288
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=8.2e-09 Score=112.91 Aligned_cols=82 Identities=23% Similarity=0.314 Sum_probs=64.2
Q ss_pred eEEEEcCcccccCCCCCCCCcchh-hHHHhHhhhccccc--------ccccEEEEEec----CCCCccchhhcCcCcccc
Q 001162 939 CLLFFDEFDSIAPKRGHDNTGVTD-RVVNQFLTELDGVE--------VLTGVFVFAAT----SRPDLLDAALLRPGRLDR 1005 (1134)
Q Consensus 939 ~VLfiDEid~l~~~r~~~~~~~~~-rv~~~lL~~ld~~~--------~~~~v~vIatT----n~p~~ld~allrpgRfd~ 1005 (1134)
.|+||||||.++.+.+.+..++.+ -+...||-.++|.. ..+.++|||+. ..|..|-|.|.- ||.-
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--RfPI 329 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RFPI 329 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CCce
Confidence 499999999999876644434443 56677887777632 35679999986 468888888875 9999
Q ss_pred eeecCCCCHHHHHHHHH
Q 001162 1006 LLFCDFPSPRERLDILK 1022 (1134)
Q Consensus 1006 ~i~~~~p~~~er~~Il~ 1022 (1134)
.+.....+.+.-..||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999999998884
No 289
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.99 E-value=5e-09 Score=104.59 Aligned_cols=129 Identities=22% Similarity=0.374 Sum_probs=80.2
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHH---HHHHHHHHhhcCCeEEEEcccc
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQA---LSNFISEALDHAPSIVIFDNLD 665 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~---l~~~f~~a~~~~PsIL~IDEiD 665 (1134)
...+++|+||||||||++++.+++.+.... .++++++|.............. ....+.......+.+|+|||++
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~ 94 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPG---APFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEID 94 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCC---CCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChh
Confidence 346799999999999999999999884221 6678888877654332221111 1122233444578899999999
Q ss_pred hhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCC--CCChhhccCCCccccccCCC
Q 001162 666 SIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE--KIPQSLTSSGRFDFHVQLPA 740 (1134)
Q Consensus 666 ~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~--~Ld~aL~~~gRF~~~i~l~~ 740 (1134)
.+.. .....+...+....... .....+.+|++++... .+++.+.+ ||+.++.+++
T Consensus 95 ~~~~---------------~~~~~~~~~i~~~~~~~---~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 95 SLSR---------------GAQNALLRVLETLNDLR---IDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred hhhH---------------HHHHHHHHHHHhcCcee---ccCCCeEEEEecCccccCCcChhHHh--hhccEeecCC
Confidence 8721 11223333333332110 0012478888888776 67777777 8877777653
No 290
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.98 E-value=4.9e-09 Score=120.51 Aligned_cols=201 Identities=15% Similarity=0.105 Sum_probs=124.8
Q ss_pred cccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccccc
Q 001162 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635 (1134)
Q Consensus 556 l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~ 635 (1134)
++|....+.++.+.+..+... ..+|||+|++||||+++|++|...... ...+++.++|..+...
T Consensus 1 liG~S~~m~~~~~~~~~~a~~-------------~~pVLI~GE~GtGK~~lAr~iH~~s~r---~~~pfv~vnc~~~~~~ 64 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL-------------DRPVLIIGERGTGKELIAARLHYLSKR---WQGPLVKLNCAALSEN 64 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC-------------CCCEEEECCCCChHHHHHHHHHHhcCc---cCCCeEEEeCCCCChH
Confidence 356777888888888665532 256999999999999999999886432 2268999999977532
Q ss_pred chhhH-HHHH-----------HHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--ccc
Q 001162 636 KGPII-RQAL-----------SNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKR 701 (1134)
Q Consensus 636 ~~~~~-~~~l-----------~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~--~~~ 701 (1134)
..+.. -... ..+|.. ...++|||||+|.|- . .+...|...++.-. ...
T Consensus 65 ~l~~~lfG~~~g~~~ga~~~~~G~~~~---a~gGtL~Ldei~~L~-----------~----~~Q~~Ll~~l~~~~~~~~g 126 (329)
T TIGR02974 65 LLDSELFGHEAGAFTGAQKRHQGRFER---ADGGTLFLDELATAS-----------L----LVQEKLLRVIEYGEFERVG 126 (329)
T ss_pred HHHHHHhccccccccCcccccCCchhh---CCCCEEEeCChHhCC-----------H----HHHHHHHHHHHcCcEEecC
Confidence 21100 0000 011222 235799999999983 2 23334444443211 101
Q ss_pred ccccCCCcEEEEEecCCC-------CCCChhhccCCCcc-ccccCCCCC--HHHHHHHHHHHhhh----c--c--cCCCH
Q 001162 702 KSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPA--ASERKAILEHEIQR----R--S--LECSD 763 (1134)
Q Consensus 702 ~~~~~~~~V~vIattn~~-------~~Ld~aL~~~gRF~-~~i~l~~P~--~eeR~~IL~~~l~~----~--~--l~~~~ 763 (1134)
.......++.+|++|+.. ..+.+.|.. |+. ..|++|+.. .++...+++.++.. . . ..+++
T Consensus 127 ~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~ 204 (329)
T TIGR02974 127 GSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTP 204 (329)
T ss_pred CCceeccceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCH
Confidence 111112357889888752 233455555 563 356666665 35566666665542 1 2 35789
Q ss_pred HHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 001162 764 EILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1134)
Q Consensus 764 ~~l~~la~~teG~s~~DL~~Lv~~a~~~a 792 (1134)
+.+..+..+..-.+.++|++++++++..+
T Consensus 205 ~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 205 QAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 99999999886678999999999988654
No 291
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.97 E-value=2.6e-10 Score=114.56 Aligned_cols=109 Identities=28% Similarity=0.345 Sum_probs=71.3
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccc------hhcc---cccHHHHHHHHHHhhhcCCeEEEEcCccccc
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL------NKYI---GASEQAVRDIFSKATAAAPCLLFFDEFDSIA 950 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~------~~~~---G~se~~v~~lf~~A~~~~P~VLfiDEid~l~ 950 (1134)
++||+||||||||++|+.+|+.++.+++.++++... +.|. |..+- ....+..|. ..++|+||||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~-~~~~l~~a~-~~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEF-KDGPLVRAM-RKGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCE-EE-CCCTTH-HEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccc-ccccccccc-cceeEEEECCcccC-
Confidence 589999999999999999999999999999887532 2221 00000 000011111 14579999999987
Q ss_pred CCCCCCCCcchhhHHHhHhhhccccc----------ccc-------cEEEEEecCCCC----ccchhhcCcCcc
Q 001162 951 PKRGHDNTGVTDRVVNQFLTELDGVE----------VLT-------GVFVFAATSRPD----LLDAALLRPGRL 1003 (1134)
Q Consensus 951 ~~r~~~~~~~~~rv~~~lL~~ld~~~----------~~~-------~v~vIatTn~p~----~ld~allrpgRf 1003 (1134)
...+...|+..++.-. ... ++.||+|+|..+ .+++++++ ||
T Consensus 78 ----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 3456666666665321 011 389999999988 69999999 87
No 292
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.97 E-value=5.9e-09 Score=127.69 Aligned_cols=231 Identities=12% Similarity=0.180 Sum_probs=136.6
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEE-EeCcc--
Q 001162 837 EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFIS-VKGPE-- 913 (1134)
Q Consensus 837 ~~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~-i~~~e-- 913 (1134)
++.+..++++.|.++..+.++.++.... .+..+..-++|+||||||||++++++|++++..+++ .+...
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~ 148 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPD 148 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhc
Confidence 3456789999999998888887765321 112233458999999999999999999999865544 22110
Q ss_pred -c-------------chhcccccHHHHHHHHHHhhh----------cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHh
Q 001162 914 -L-------------LNKYIGASEQAVRDIFSKATA----------AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 969 (1134)
Q Consensus 914 -l-------------~~~~~G~se~~v~~lf~~A~~----------~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL 969 (1134)
. +..+ -.....++.++..|.. ....||||||++.++.. ..+.+..+|
T Consensus 149 ~~~~~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r--------~~~~lq~lL 219 (637)
T TIGR00602 149 FQKNDHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR--------DTRALHEIL 219 (637)
T ss_pred ccccccccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh--------hHHHHHHHH
Confidence 0 0111 1223456666666642 34579999999987632 222444454
Q ss_pred h-hcccccccccEEEEEecCCCC--------------ccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCC--CC
Q 001162 970 T-ELDGVEVLTGVFVFAATSRPD--------------LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPL--AD 1032 (1134)
Q Consensus 970 ~-~ld~~~~~~~v~vIatTn~p~--------------~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~--~~ 1032 (1134)
. ... +...-.+|+++|..|. .+.+++++..|+. .|.|.+++..+..+.|+.++..... ..
T Consensus 220 r~~~~--e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E~~~~~~ 296 (637)
T TIGR00602 220 RWKYV--SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIEAKKNGE 296 (637)
T ss_pred HHHhh--cCCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhhhhcccc
Confidence 4 221 2222234444443332 1336777533443 7899999999988888877764321 11
Q ss_pred ------cccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhcCC
Q 001162 1033 ------DVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARP 1095 (1134)
Q Consensus 1033 ------~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~~p 1095 (1134)
...+..|+. .+++|++.++..-.+.+... ...+.......++..|...+.....+
T Consensus 297 ~~~~p~~~~l~~I~~----~s~GDiRsAIn~LQf~~~~~----g~~a~~~~~~~vs~~hv~~a~~k~~~ 357 (637)
T TIGR00602 297 KIKVPKKTSVELLCQ----GCSGDIRSAINSLQFSSSKS----GSLPIKKRMSTKSDAHASKSKIKGKH 357 (637)
T ss_pred ccccCCHHHHHHHHH----hCCChHHHHHHHHHHHHhcC----CccccccccccccHHHhhhccccCCC
Confidence 123444444 56778888776544444321 11222334567888888877665544
No 293
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.97 E-value=1.1e-08 Score=121.55 Aligned_cols=179 Identities=18% Similarity=0.301 Sum_probs=123.4
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHH----hhcCCeEEEE
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEA----LDHAPSIVIF 661 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a----~~~~PsIL~I 661 (1134)
+.|+.+-+||+||||-||||||+.+|+..+ ..++.|++++-.. ...+...+..+.+.- ...+|.+|++
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqaG------YsVvEINASDeRt--~~~v~~kI~~avq~~s~l~adsrP~CLVi 393 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQAG------YSVVEINASDERT--APMVKEKIENAVQNHSVLDADSRPVCLVI 393 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhcC------ceEEEeccccccc--HHHHHHHHHHHHhhccccccCCCcceEEE
Confidence 456666689999999999999999999988 8899999988543 234444455444432 1257999999
Q ss_pred cccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHh-----cccc-------ccccCCCcEEEEEecCCCCCCChhhccC
Q 001162 662 DNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY-----GEKR-------KSSCGIGPIAFVASAQSLEKIPQSLTSS 729 (1134)
Q Consensus 662 DEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~-----~~~~-------~~~~~~~~V~vIattn~~~~Ld~aL~~~ 729 (1134)
||||--. ..+.+.++.++..- .... ......-..-||+.||. ..-|+|+.-
T Consensus 394 DEIDGa~---------------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~L 456 (877)
T KOG1969|consen 394 DEIDGAP---------------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPL 456 (877)
T ss_pred ecccCCc---------------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhc
Confidence 9998532 13344444444310 0000 00000012357788885 345777654
Q ss_pred CCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHh
Q 001162 730 GRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAV 793 (1134)
Q Consensus 730 gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~ 793 (1134)
.-|...+.|.+|...-..+-|+..+.+.++.++...+..++..|++ |++..++.....+.
T Consensus 457 r~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~----DIRsCINtLQfLa~ 516 (877)
T KOG1969|consen 457 RPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQN----DIRSCINTLQFLAS 516 (877)
T ss_pred ccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHHHHHHHH
Confidence 4677899999999999999999999999999999999999998877 77777766554443
No 294
>PRK04132 replication factor C small subunit; Provisional
Probab=98.97 E-value=2e-08 Score=126.05 Aligned_cols=147 Identities=15% Similarity=0.165 Sum_probs=113.9
Q ss_pred CCceEEEc--CCCCchhHHHHHHHHHc-----CCcEEEEeCcccchhcccccHHHHHHHHHHhhhc------CCeEEEEc
Q 001162 878 RSNVLLYG--PPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQAVRDIFSKATAA------APCLLFFD 944 (1134)
Q Consensus 878 ~~~vLL~G--ppGtGKT~lA~alA~~~-----~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~------~P~VLfiD 944 (1134)
+-+-+..| |++.|||++|+++|+++ +.+++++|+++..+ -..+|++.+.+... .+.|+|||
T Consensus 564 ~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIID 637 (846)
T PRK04132 564 GYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLD 637 (846)
T ss_pred chhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEE
Confidence 34567778 99999999999999997 56899999998432 24677776654322 23699999
Q ss_pred CcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHH
Q 001162 945 EFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVI 1024 (1134)
Q Consensus 945 Eid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~ 1024 (1134)
|+|.| +....+.|+..|+ +....+.||++||.++.+.+++++ |+ ..+.|++|+.++....++.+
T Consensus 638 EaD~L-----------t~~AQnALLk~lE--ep~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 638 EADAL-----------TQDAQQALRRTME--MFSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred CcccC-----------CHHHHHHHHHHhh--CCCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 99999 3457889999997 344678888899999999999998 66 57799999999999999988
Q ss_pred HccCCCC-CcccHHHHHHhccCC
Q 001162 1025 SRKLPLA-DDVDLEAIAHMTEGF 1046 (1134)
Q Consensus 1025 ~~~~~~~-~~vd~~~La~~t~g~ 1046 (1134)
+++.++. ++..+..++..++|-
T Consensus 702 ~~~Egi~i~~e~L~~Ia~~s~GD 724 (846)
T PRK04132 702 AENEGLELTEEGLQAILYIAEGD 724 (846)
T ss_pred HHhcCCCCCHHHHHHHHHHcCCC
Confidence 8765553 344567777777653
No 295
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=4.9e-09 Score=120.03 Aligned_cols=151 Identities=21% Similarity=0.286 Sum_probs=106.7
Q ss_pred CCCCceEEEcCCCCchhHHHHHHHHHcCC------------------------cEEEEeCcccchhcccccHHHHHHHHH
Q 001162 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSL------------------------RFISVKGPELLNKYIGASEQAVRDIFS 931 (1134)
Q Consensus 876 ~~~~~vLL~GppGtGKT~lA~alA~~~~~------------------------~~i~i~~~el~~~~~G~se~~v~~lf~ 931 (1134)
+.+..+||+||+|+|||++|+++|+.+.. .++.+...+- ++ .-.-+.+|++.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHH
Confidence 34557999999999999999999997743 2233322110 00 113456777766
Q ss_pred Hhh----hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCccccee
Q 001162 932 KAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLL 1007 (1134)
Q Consensus 932 ~A~----~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i 1007 (1134)
.+. .+...|++|||+|+| .....|.||+.|+ ++..++++|.+|+.++.+.|.+++ |+.. +
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m-----------~~~aaNaLLK~LE--EPp~~~~fiL~t~~~~~ll~TI~S--Rc~~-~ 160 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAM-----------NRNAANALLKSLE--EPSGDTVLLLISHQPSRLLPTIKS--RCQQ-Q 160 (328)
T ss_pred HHhhccccCCCeEEEECChhhC-----------CHHHHHHHHHHHh--CCCCCeEEEEEECChhhCcHHHHh--hcee-e
Confidence 553 345679999999998 5678999999998 555788888999999999999999 6654 7
Q ss_pred ecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcH
Q 001162 1008 FCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSG 1048 (1134)
Q Consensus 1008 ~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg 1048 (1134)
.|++|+.++..+.++..... ..+.+...+++.+.|-.+
T Consensus 161 ~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGSPL 198 (328)
T ss_pred eCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCCHH
Confidence 99999999888888754311 123334456666666444
No 296
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.96 E-value=3.7e-09 Score=104.46 Aligned_cols=128 Identities=27% Similarity=0.316 Sum_probs=83.3
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHcCCc---EEEEeCcccchh--------------cccccHHHHHHHHHHhhhcCCeE
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAACSLR---FISVKGPELLNK--------------YIGASEQAVRDIFSKATAAAPCL 940 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~~~~---~i~i~~~el~~~--------------~~G~se~~v~~lf~~A~~~~P~V 940 (1134)
+.+++|+||||||||++++.+|..+... ++.+++...... .........+.+++.|+...|.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3579999999999999999999999765 888888754322 12344567788889998887899
Q ss_pred EEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCC-CCccchhhcCcCcccceeecCCC
Q 001162 941 LFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSR-PDLLDAALLRPGRLDRLLFCDFP 1012 (1134)
Q Consensus 941 LfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~-p~~ld~allrpgRfd~~i~~~~p 1012 (1134)
|||||++.+...... ......................+|+++|. ....+..+.+ |++..+.++.+
T Consensus 82 iiiDei~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQE-----ALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHH-----HHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 999999998643110 00000000000111123456777778886 3334455555 88888877654
No 297
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.95 E-value=3.9e-09 Score=121.87 Aligned_cols=131 Identities=30% Similarity=0.439 Sum_probs=90.7
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchh--cccccHHHHH------------HHHHHhhhcCCeEEEE
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK--YIGASEQAVR------------DIFSKATAAAPCLLFF 943 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~--~~G~se~~v~------------~lf~~A~~~~P~VLfi 943 (1134)
..++||.||||||||++|+.+|..++.+|+.+.+..-+.. .+|...-..+ -+|...+ +|+|+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~ 118 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLL 118 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEE
Confidence 3589999999999999999999999999999999754321 1222111111 0111111 39999
Q ss_pred cCcccccCCCCCCCCcchhhHHHhHhhhccc----------ccccccEEEEEecCC-----CCccchhhcCcCcccceee
Q 001162 944 DEFDSIAPKRGHDNTGVTDRVVNQFLTELDG----------VEVLTGVFVFAATSR-----PDLLDAALLRPGRLDRLLF 1008 (1134)
Q Consensus 944 DEid~l~~~r~~~~~~~~~rv~~~lL~~ld~----------~~~~~~v~vIatTn~-----p~~ld~allrpgRfd~~i~ 1008 (1134)
|||++.. ..+.+.|+..|+. +.-...++|++|+|. -..+.+|+++ ||...++
T Consensus 119 DEInra~-----------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~ 185 (329)
T COG0714 119 DEINRAP-----------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIY 185 (329)
T ss_pred eccccCC-----------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEe
Confidence 9999874 4577788877764 223356888888883 3348899999 9988899
Q ss_pred cCCC-CHHHHHHHHHHHH
Q 001162 1009 CDFP-SPRERLDILKVIS 1025 (1134)
Q Consensus 1009 ~~~p-~~~er~~Il~~~~ 1025 (1134)
++.| ..++...++....
T Consensus 186 v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 186 VDYPDSEEEERIILARVG 203 (329)
T ss_pred cCCCCchHHHHHHHHhCc
Confidence 9999 5555555554433
No 298
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.95 E-value=1.6e-08 Score=118.71 Aligned_cols=151 Identities=19% Similarity=0.164 Sum_probs=90.9
Q ss_pred CCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC--cEEEEeCc-ccchhccccc
Q 001162 846 VGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--RFISVKGP-ELLNKYIGAS 922 (1134)
Q Consensus 846 i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~--~~i~i~~~-el~~~~~G~s 922 (1134)
+.|.+++.+.+...+. ...++||+||||||||++|+++|..++. +|..+.+. ..-...+|..
T Consensus 22 i~gre~vI~lll~aal---------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 22 LYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred ccCcHHHHHHHHHHHc---------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 5666666666655443 2468999999999999999999997743 34333322 0111122211
Q ss_pred -HHHH--HHHHHHhhhc---CCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccc--------cccccEEEEEecC
Q 001162 923 -EQAV--RDIFSKATAA---APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV--------EVLTGVFVFAATS 988 (1134)
Q Consensus 923 -e~~v--~~lf~~A~~~---~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~--------~~~~~v~vIatTn 988 (1134)
-... ..-|.+...+ ...+||+|||..+ ...+.+.||..|..- ...+..++++|||
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN 155 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASN 155 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccC-----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECC
Confidence 0000 1122222111 2249999999876 456888888888321 1222345555666
Q ss_pred CCC---ccchhhcCcCcccceeecCCCC-HHHHHHHHHHH
Q 001162 989 RPD---LLDAALLRPGRLDRLLFCDFPS-PRERLDILKVI 1024 (1134)
Q Consensus 989 ~p~---~ld~allrpgRfd~~i~~~~p~-~~er~~Il~~~ 1024 (1134)
... ...+++.. ||-..+.+|+|+ .++-.+|++..
T Consensus 156 ~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 156 ELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 432 24468888 998889999997 46667777653
No 299
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.94 E-value=9.7e-09 Score=118.12 Aligned_cols=201 Identities=16% Similarity=0.139 Sum_probs=127.3
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccc
Q 001162 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (1134)
Q Consensus 553 ~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l 632 (1134)
+.+++|.+..+.++.+.+..+... +.+|||+|++||||+++|+++...... ...+++.++|..+
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~-------------~~pVlI~GE~GtGK~~lA~~iH~~s~r---~~~pfv~v~c~~~ 68 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPL-------------DKPVLIIGERGTGKELIASRLHYLSSR---WQGPFISLNCAAL 68 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCC-------------CCCEEEECCCCCcHHHHHHHHHHhCCc---cCCCeEEEeCCCC
Confidence 457888999999999998776532 256999999999999999999875321 2268999999987
Q ss_pred cccchhhHHHHH---------------HHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q 001162 633 SLEKGPIIRQAL---------------SNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1134)
Q Consensus 633 ~~~~~~~~~~~l---------------~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~ 697 (1134)
.... +...+ ...+.. ...+.|||||+|.|. . .+...|...++.-
T Consensus 69 ~~~~---~~~~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~~i~~L~-----------~----~~Q~~L~~~l~~~ 127 (326)
T PRK11608 69 NENL---LDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAP-----------M----LVQEKLLRVIEYG 127 (326)
T ss_pred CHHH---HHHHHccccccccCCcccccCCchhc---cCCCeEEeCChhhCC-----------H----HHHHHHHHHHhcC
Confidence 4321 11111 011222 235689999999984 1 2333444444321
Q ss_pred c--cccccccCCCcEEEEEecCCC-------CCCChhhccCCCcc-ccccCCCCCH--HHHHHHHHHHhhh----cc---
Q 001162 698 G--EKRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR----RS--- 758 (1134)
Q Consensus 698 ~--~~~~~~~~~~~V~vIattn~~-------~~Ld~aL~~~gRF~-~~i~l~~P~~--eeR~~IL~~~l~~----~~--- 758 (1134)
. ..+.......++.+|++++.. ..+.+.|.. ||. ..|.+|+... ++...++..++.. .+
T Consensus 128 ~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~ 205 (326)
T PRK11608 128 ELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPL 205 (326)
T ss_pred cEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCC
Confidence 1 100000111247888887752 234455555 663 3566666553 4555566655432 12
Q ss_pred -cCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 001162 759 -LECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1134)
Q Consensus 759 -l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a 792 (1134)
..++++.+..+..+.--.+.++|++++++++..+
T Consensus 206 ~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 206 FPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred CCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 2478999999998887778999999999987644
No 300
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.94 E-value=7.6e-09 Score=128.93 Aligned_cols=155 Identities=21% Similarity=0.291 Sum_probs=104.7
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc-------------------
Q 001162 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC------------------- 902 (1134)
Q Consensus 842 ~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~------------------- 902 (1134)
.|.+|+|++.++..|.-....+ ...++||.|++|||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 3678999999998886655533 12479999999999999999999987
Q ss_pred ----------------CCcEEEEeCcccchhccccc--HHHH--------HHHHHHhhhcCCeEEEEcCcccccCCCCCC
Q 001162 903 ----------------SLRFISVKGPELLNKYIGAS--EQAV--------RDIFSKATAAAPCLLFFDEFDSIAPKRGHD 956 (1134)
Q Consensus 903 ----------------~~~~i~i~~~el~~~~~G~s--e~~v--------~~lf~~A~~~~P~VLfiDEid~l~~~r~~~ 956 (1134)
..+|+.+.+.......+|.- +..+ ..++..|.. .||||||++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~---GiL~lDEi~~l------- 138 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHR---GILYIDEVNLL------- 138 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCC---CeEEeChhhhC-------
Confidence 24666665543333333321 1111 112222222 39999999998
Q ss_pred CCcchhhHHHhHhhhcccc----cc-------cccEEEEEecCCC-CccchhhcCcCcccceeecCCCC-HHHHHHHHHH
Q 001162 957 NTGVTDRVVNQFLTELDGV----EV-------LTGVFVFAATSRP-DLLDAALLRPGRLDRLLFCDFPS-PRERLDILKV 1023 (1134)
Q Consensus 957 ~~~~~~rv~~~lL~~ld~~----~~-------~~~v~vIatTn~p-~~ld~allrpgRfd~~i~~~~p~-~~er~~Il~~ 1023 (1134)
...+.+.|+..|+.- +. ..++.+|+|+|.. ..+.++|+. ||+..+.++.+. .+++.+|++.
T Consensus 139 ----~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 139 ----DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred ----CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 456777888877521 11 1358888888843 248889999 999888888764 6778888875
Q ss_pred HH
Q 001162 1024 IS 1025 (1134)
Q Consensus 1024 ~~ 1025 (1134)
..
T Consensus 213 ~~ 214 (633)
T TIGR02442 213 RL 214 (633)
T ss_pred HH
Confidence 43
No 301
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.94 E-value=3.3e-08 Score=110.74 Aligned_cols=190 Identities=17% Similarity=0.238 Sum_probs=114.0
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcC-CcEEE--E-eC----cccch---hccccc-----H-HHHHHH---H-HHhhhcCC
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACS-LRFIS--V-KG----PELLN---KYIGAS-----E-QAVRDI---F-SKATAAAP 938 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~-~~~i~--i-~~----~el~~---~~~G~s-----e-~~v~~l---f-~~A~~~~P 938 (1134)
.++|+||+|+|||++++.+++.+. ..++. + +. .+++. ...|.. . ..++.+ + .....+.+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 488999999999999999999875 22221 1 11 11110 111211 1 112222 2 22345667
Q ss_pred eEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCc---cc----hhhcCcCcccceeecCC
Q 001162 939 CLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LD----AALLRPGRLDRLLFCDF 1011 (1134)
Q Consensus 939 ~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~---ld----~allrpgRfd~~i~~~~ 1011 (1134)
.+|+|||++.+.+. ....+..+..... .....+.|+.+ ..|+. +. ..+.+ |+...+.+++
T Consensus 125 ~vliiDe~~~l~~~--------~~~~l~~l~~~~~--~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r~~~~~~l~~ 191 (269)
T TIGR03015 125 ALLVVDEAQNLTPE--------LLEELRMLSNFQT--DNAKLLQIFLV-GQPEFRETLQSPQLQQLRQ--RIIASCHLGP 191 (269)
T ss_pred eEEEEECcccCCHH--------HHHHHHHHhCccc--CCCCeEEEEEc-CCHHHHHHHcCchhHHHHh--heeeeeeCCC
Confidence 89999999987321 1112222221111 11222322222 33332 21 23444 7778889999
Q ss_pred CCHHHHHHHHHHHHccCCC-----CCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHH
Q 001162 1012 PSPRERLDILKVISRKLPL-----ADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALL 1086 (1134)
Q Consensus 1012 p~~~er~~Il~~~~~~~~~-----~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l 1086 (1134)
.+.++..+++...++..+. -.+..++.|++.+.|..+. |..+|+.+...|..+ +...|+.+++
T Consensus 192 l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~~a~~~-----------~~~~i~~~~v 259 (269)
T TIGR03015 192 LDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLLSAFLE-----------EKREIGGEEV 259 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHHHHHHc-----------CCCCCCHHHH
Confidence 9999999999988765432 1334577788899988655 999999888887654 2347999999
Q ss_pred HHHHhhcC
Q 001162 1087 KSIASKAR 1094 (1134)
Q Consensus 1087 ~~al~~~~ 1094 (1134)
..++....
T Consensus 260 ~~~~~~~~ 267 (269)
T TIGR03015 260 REVIAEID 267 (269)
T ss_pred HHHHHHhh
Confidence 99987653
No 302
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.93 E-value=9e-09 Score=118.40 Aligned_cols=149 Identities=21% Similarity=0.273 Sum_probs=104.6
Q ss_pred CCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcC---------------------
Q 001162 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS--------------------- 903 (1134)
Q Consensus 845 ~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~--------------------- 903 (1134)
++.+.+.+...+........ +.+..+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 45556666666665554211 1222499999999999999999999886
Q ss_pred ---CcEEEEeCcccchhcccccHHHHHHHHHHhhh----cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc
Q 001162 904 ---LRFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE 976 (1134)
Q Consensus 904 ---~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~----~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~ 976 (1134)
-.++++++++.... .-....++++-+.... ++..|++|||+|.| +..+.|.++..|+ +
T Consensus 71 ~~~~d~lel~~s~~~~~--~i~~~~vr~~~~~~~~~~~~~~~kviiidead~m-----------t~~A~nallk~lE--e 135 (325)
T COG0470 71 GNHPDFLELNPSDLRKI--DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKL-----------TEDAANALLKTLE--E 135 (325)
T ss_pred cCCCceEEecccccCCC--cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHH-----------hHHHHHHHHHHhc--c
Confidence 47888888875332 1234456666554422 44679999999999 4468899999997 5
Q ss_pred ccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHH
Q 001162 977 VLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILK 1022 (1134)
Q Consensus 977 ~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~ 1022 (1134)
+..+.++|.+||.++.+-+.+++ |+ ..+.|++|+...+....+
T Consensus 136 p~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 136 PPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred CCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHhh
Confidence 66778888899999998889998 55 356777765555544333
No 303
>PRK04132 replication factor C small subunit; Provisional
Probab=98.92 E-value=1.1e-08 Score=128.38 Aligned_cols=167 Identities=19% Similarity=0.204 Sum_probs=124.9
Q ss_pred eEEEEc--CCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhc--CCeEEEEcccchh
Q 001162 592 HILIHG--PPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDH--APSIVIFDNLDSI 667 (1134)
Q Consensus 592 ~vLL~G--ppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~--~PsIL~IDEiD~L 667 (1134)
+-+..| |++.||||+|+++|+++... .....++.+|+++..+ .+.++..+.......... ...|+||||+|.|
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~-~~~~~~lElNASd~rg--id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~L 642 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGE-NWRHNFLELNASDERG--INVIREKVKEFARTKPIGGASFKIIFLDEADAL 642 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcc-cccCeEEEEeCCCccc--HHHHHHHHHHHHhcCCcCCCCCEEEEEECcccC
Confidence 467889 99999999999999997321 2226789999997543 334444444433222111 2369999999998
Q ss_pred ccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHH
Q 001162 668 ISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERK 747 (1134)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~ 747 (1134)
.. ...+.|+..|+.+.. .+.+|++||++..+.+.+++ |+. .+.|++|+.++..
T Consensus 643 t~---------------~AQnALLk~lEep~~---------~~~FILi~N~~~kIi~tIrS--RC~-~i~F~~ls~~~i~ 695 (846)
T PRK04132 643 TQ---------------DAQQALRRTMEMFSS---------NVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIA 695 (846)
T ss_pred CH---------------HHHHHHHHHhhCCCC---------CeEEEEEeCChhhCchHHhh--hce-EEeCCCCCHHHHH
Confidence 41 345667777776543 47899999999999999999 754 8999999999999
Q ss_pred HHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 748 AILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 748 ~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
..|+..+...++.++++.+..++..++| +.+...++++.++
T Consensus 696 ~~L~~I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~ 736 (846)
T PRK04132 696 KRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 736 (846)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9999988877888999999999999998 5556556666543
No 304
>PRK09087 hypothetical protein; Validated
Probab=98.92 E-value=1.8e-08 Score=109.66 Aligned_cols=168 Identities=18% Similarity=0.172 Sum_probs=105.0
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCc
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG 959 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~ 959 (1134)
.++|+||+|+|||+|++++++..+..++. ..++.. +++..... .+|+|||++.+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~--~~~~~~-----------~~~~~~~~---~~l~iDDi~~~~~-------- 101 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIH--PNEIGS-----------DAANAAAE---GPVLIEDIDAGGF-------- 101 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEec--HHHcch-----------HHHHhhhc---CeEEEECCCCCCC--------
Confidence 48999999999999999999887655433 322211 12222222 3888999997621
Q ss_pred chhhHHHhHhhhcccccccccEEEEEecCCCCc---cchhhcCcCccc--ceeecCCCCHHHHHHHHHHHHccCCCC-Cc
Q 001162 960 VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRKLPLA-DD 1033 (1134)
Q Consensus 960 ~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~---ld~allrpgRfd--~~i~~~~p~~~er~~Il~~~~~~~~~~-~~ 1033 (1134)
.. .+|...++.+...++.+|++++..|.. ..+.+++ ||. .++.+.+|+.++|..|++..++..++. ++
T Consensus 102 -~~---~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ 175 (226)
T PRK09087 102 -DE---TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDP 175 (226)
T ss_pred -CH---HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 11 123333333344455677766666554 3688888 764 788999999999999999988776543 23
Q ss_pred ccHHHHHHhccCCcHHHHHHHHH---HHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhc
Q 001162 1034 VDLEAIAHMTEGFSGADLQALLS---DAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 1093 (1134)
Q Consensus 1034 vd~~~La~~t~g~sg~dl~~l~~---~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~ 1093 (1134)
.-++.|++... ++++.+.. .-...+.. ....||...++++++..
T Consensus 176 ev~~~La~~~~----r~~~~l~~~l~~L~~~~~~------------~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 176 HVVYYLVSRME----RSLFAAQTIVDRLDRLALE------------RKSRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHHhh----hhHHHHHHHHHHHHHHHHH------------hCCCCCHHHHHHHHHhh
Confidence 33666676655 45544332 21111111 12358988888888653
No 305
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=3.1e-08 Score=114.49 Aligned_cols=189 Identities=20% Similarity=0.230 Sum_probs=118.1
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc-----ee-----
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD-----LV----- 621 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~-----~~----- 621 (1134)
.+..+.|.+.+.+.+...+.. ...|..+||+||+|+|||++|+.+|+.+..... ..
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~--------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYRE--------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred chhhccCcHHHHHHHHHHHHc--------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 467888998888877765532 223456999999999999999999999864210 00
Q ss_pred --e------------EEEEEecc-ccc------ccchhhHHHHHHHHHHH-HhhcCCeEEEEcccchhccCCCCCCCCCC
Q 001162 622 --A------------HIVFVCCS-RLS------LEKGPIIRQALSNFISE-ALDHAPSIVIFDNLDSIISSSSDPEGSQP 679 (1134)
Q Consensus 622 --~------------~~~~v~~s-~l~------~~~~~~~~~~l~~~f~~-a~~~~PsIL~IDEiD~L~~~~~~~~~~~~ 679 (1134)
. .+..+... +.. .-..+.++. +.+.|.. .......|++|||+|.|..
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~-l~~~l~~~~~~g~~rVviIDeAd~l~~---------- 155 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRR-VGHFLSQTSGDGNWRIVIIDPADDMNR---------- 155 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHH-HHHHhhhccccCCceEEEEEchhhcCH----------
Confidence 0 01111100 000 011233332 2333332 2223456999999999841
Q ss_pred chhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhccc
Q 001162 680 STSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSL 759 (1134)
Q Consensus 680 ~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l 759 (1134)
.-.+.|+..+++... ...+|..++.++.+.+.+++ |+ ..+.|++|+.++..++|.......
T Consensus 156 -----~aanaLLk~LEEpp~---------~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~-- 216 (351)
T PRK09112 156 -----NAANAILKTLEEPPA---------RALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQ-- 216 (351)
T ss_pred -----HHHHHHHHHHhcCCC---------CceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhccc--
Confidence 234456666665432 24555556778888899998 77 499999999999999998743222
Q ss_pred CCCHHHHHHHhhhcCCCChhhHHHHH
Q 001162 760 ECSDEILLDVASKCDGYDAYDLEILV 785 (1134)
Q Consensus 760 ~~~~~~l~~la~~teG~s~~DL~~Lv 785 (1134)
.++++.+..++..+.| +++....++
T Consensus 217 ~~~~~~~~~i~~~s~G-~pr~Al~ll 241 (351)
T PRK09112 217 GSDGEITEALLQRSKG-SVRKALLLL 241 (351)
T ss_pred CCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 2567778888888777 455444444
No 306
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=2.1e-08 Score=115.52 Aligned_cols=149 Identities=16% Similarity=0.190 Sum_probs=107.5
Q ss_pred CCCCCCC-hhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC----------------
Q 001162 842 GWDDVGG-LTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL---------------- 904 (1134)
Q Consensus 842 ~~~~i~g-l~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~---------------- 904 (1134)
.|+.|.| ++.+.+.+...+... +.+..+||+||+|+|||++|+++|+.+-.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 3667666 888999988887531 34456799999999999999999987632
Q ss_pred --------cEEEEeCcccchhcccccHHHHHHHHHHhh----hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhc
Q 001162 905 --------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTEL 972 (1134)
Q Consensus 905 --------~~i~i~~~el~~~~~G~se~~v~~lf~~A~----~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~l 972 (1134)
.+..+... ++. -.-+.+|++.+.+. .+...|++|||+|.+ .....|.||+.|
T Consensus 71 ~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----------~~~a~NaLLK~L 134 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----------TASAANSLLKFL 134 (329)
T ss_pred HHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----------CHHHHHHHHHHh
Confidence 12222111 010 12346677666543 234569999999998 566889999999
Q ss_pred ccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHH
Q 001162 973 DGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKV 1023 (1134)
Q Consensus 973 d~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~ 1023 (1134)
+ ++.+.+++|.+|+.++.+-|++++ |+ ..+.|++|+.++..++++.
T Consensus 135 E--EPp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 135 E--EPSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred c--CCCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 8 556677777788889999999999 44 5779999999988777753
No 307
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.91 E-value=5.7e-08 Score=121.31 Aligned_cols=139 Identities=22% Similarity=0.237 Sum_probs=88.6
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc------ccc-----cchhhHHHHHHHHHHHHhhcCCeEE
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR------LSL-----EKGPIIRQALSNFISEALDHAPSIV 659 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~------l~~-----~~~~~~~~~l~~~f~~a~~~~PsIL 659 (1134)
+++||-|.||+|||+|+.++|++.+ ...+.|+.++ +.| ...|++. ..+.--.+..+....+
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG------~kliRINLSeQTdL~DLfGsd~Pve~~Gef~--w~dapfL~amr~G~WV 1615 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTG------KKLIRINLSEQTDLCDLFGSDLPVEEGGEFR--WMDAPFLHAMRDGGWV 1615 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhc------CceEEeeccccchHHHHhCCCCCcccCceeE--ecccHHHHHhhcCCEE
Confidence 6699999999999999999999998 5566666543 222 2222221 1111111122445689
Q ss_pred EEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc-----ccccccCCCcEEEEEecCCCC------CCChhhcc
Q 001162 660 IFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE-----KRKSSCGIGPIAFVASAQSLE------KIPQSLTS 728 (1134)
Q Consensus 660 ~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~-----~~~~~~~~~~V~vIattn~~~------~Ld~aL~~ 728 (1134)
++||+.. + ++.+++-|...+|.... -+.......++.|.|+-|+.+ .+|..+..
T Consensus 1616 lLDEiNL-a--------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n 1680 (4600)
T COG5271 1616 LLDEINL-A--------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN 1680 (4600)
T ss_pred Eeehhhh-h--------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh
Confidence 9999954 3 12556666666665332 111233345678888877644 47888888
Q ss_pred CCCccccccCCCCCHHHHHHHHHHHhh
Q 001162 729 SGRFDFHVQLPAPAASERKAILEHEIQ 755 (1134)
Q Consensus 729 ~gRF~~~i~l~~P~~eeR~~IL~~~l~ 755 (1134)
||. ++.+..++.++...|..++..
T Consensus 1681 --RFs-vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1681 --RFS-VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred --hhh-eEEecccccchHHHHHHhhCC
Confidence 997 777888888888888776543
No 308
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.3e-08 Score=108.77 Aligned_cols=199 Identities=22% Similarity=0.271 Sum_probs=128.3
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccc--ccchhhHHHHHHHHHHHHhh----cCCeEEEEccc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS--LEKGPIIRQALSNFISEALD----HAPSIVIFDNL 664 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~--~~~~~~~~~~l~~~f~~a~~----~~PsIL~IDEi 664 (1134)
.+|||.||+|||||.||+.+|+.|. .++..-|+..|. |.-+++.+..+..+++.|.. .+.+|++||||
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~Ln------VPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEI 171 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILN------VPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEI 171 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhC------CCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEech
Confidence 5699999999999999999999998 888888988886 33445667778888877754 35679999999
Q ss_pred chhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----ccccccc--------CCCcEEEEEecCC--------------
Q 001162 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSC--------GIGPIAFVASAQS-------------- 718 (1134)
Q Consensus 665 D~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~--------~~~~V~vIattn~-------------- 718 (1134)
|++..++..+.-. ..-+...+.+.|+.++++-. ...+.-+ ...++.+|+..--
T Consensus 172 DKIarkSeN~SIT-RDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~ 250 (408)
T COG1219 172 DKIARKSENPSIT-RDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKK 250 (408)
T ss_pred hhhhccCCCCCcc-cccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCC
Confidence 9998643322211 11122356677777776432 1111111 1224555543210
Q ss_pred --------C--C-----------CCChhhccC-------CCccccccCCCCCHHHHHHHHHH-----------Hhhh--c
Q 001162 719 --------L--E-----------KIPQSLTSS-------GRFDFHVQLPAPAASERKAILEH-----------EIQR--R 757 (1134)
Q Consensus 719 --------~--~-----------~Ld~aL~~~-------gRF~~~i~l~~P~~eeR~~IL~~-----------~l~~--~ 757 (1134)
. + -.+..|..- ||++.+..+...+.+...+||.. ++.. -
T Consensus 251 ~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V 330 (408)
T COG1219 251 GIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGV 330 (408)
T ss_pred cccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCc
Confidence 0 0 011122211 48888889999999999998851 2222 2
Q ss_pred ccCCCHHHHHHHhhhc--CCCChhhHHHHHHHHHHHHhccc
Q 001162 758 SLECSDEILLDVASKC--DGYDAYDLEILVDRTVHAAVGRY 796 (1134)
Q Consensus 758 ~l~~~~~~l~~la~~t--eG~s~~DL~~Lv~~a~~~a~~r~ 796 (1134)
.+.+.++++..+|... .+.-+|.|+.++++.+...+...
T Consensus 331 ~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~lld~Mfel 371 (408)
T COG1219 331 ELEFTEEALKAIAKKAIERKTGARGLRSIIEELLLDVMFEL 371 (408)
T ss_pred eEEEcHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhC
Confidence 3457888888888764 34446778888888877766653
No 309
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.90 E-value=2.8e-08 Score=114.93 Aligned_cols=170 Identities=21% Similarity=0.305 Sum_probs=111.1
Q ss_pred CCCceEEEcCCCCchhHHHHHHHHHc-----CCcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccC
Q 001162 877 LRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1134)
Q Consensus 877 ~~~~vLL~GppGtGKT~lA~alA~~~-----~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~ 951 (1134)
+...++||||.|.|||+|++|++++. +..++.+...++...++-.....--+-|+.-. +-.+++||+++.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 34569999999999999999999877 35688888888776665443222223344433 336999999999976
Q ss_pred CCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCc---cchhhcCcCcccc--eeecCCCCHHHHHHHHHHHHc
Q 001162 952 KRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRLDR--LLFCDFPSPRERLDILKVISR 1026 (1134)
Q Consensus 952 ~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~---ld~allrpgRfd~--~i~~~~p~~~er~~Il~~~~~ 1026 (1134)
+.. ....+++.|- .+....+-+|+.+...|.. ++|.|.+ ||.. .+.+.+|+.+.|..||+....
T Consensus 190 k~~-----~qeefFh~FN----~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 190 KER-----TQEEFFHTFN----ALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred Chh-----HHHHHHHHHH----HHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 521 1223333333 2233445666655555666 5688888 7764 557899999999999999776
Q ss_pred cCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHH
Q 001162 1027 KLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQL 1060 (1134)
Q Consensus 1027 ~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~ 1060 (1134)
..++. ++.-...+|...+ -+.+++..++.....
T Consensus 259 ~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~ 292 (408)
T COG0593 259 DRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDA 292 (408)
T ss_pred hcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHH
Confidence 65543 2333556666654 356666665544333
No 310
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.8e-08 Score=111.92 Aligned_cols=197 Identities=21% Similarity=0.306 Sum_probs=130.2
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccc--ccchhhHHHHHHHHHHHHhh----cCCeEEEEccc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS--LEKGPIIRQALSNFISEALD----HAPSIVIFDNL 664 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~--~~~~~~~~~~l~~~f~~a~~----~~PsIL~IDEi 664 (1134)
.+|||.||+|+|||.||+.||+.+. .++...||..|. +.-+++++..|..++..|.. .+.+|+||||+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ld------VPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEv 300 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLD------VPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEV 300 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhC------CCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehh
Confidence 5699999999999999999999998 899999999886 33445667778888877643 46689999999
Q ss_pred chhccCCCCCCCCCCchhHHHHHHHHHHHHHHh----cccccc--------ccCCCcEEEEEecCCC--C----------
Q 001162 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY----GEKRKS--------SCGIGPIAFVASAQSL--E---------- 720 (1134)
Q Consensus 665 D~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~----~~~~~~--------~~~~~~V~vIattn~~--~---------- 720 (1134)
|+|..+... -+....-.-+.+.+.|+.+++.- ..++.. .....+|.+|++.--. +
T Consensus 301 DKi~~~~~~-i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~ 379 (564)
T KOG0745|consen 301 DKITKKAES-IHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDK 379 (564)
T ss_pred hhhcccCcc-ccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcch
Confidence 999832211 11111112235566666666632 111110 1112256666543110 0
Q ss_pred --------------------C------------------------CChhhccCCCccccccCCCCCHHHHHHHHH-----
Q 001162 721 --------------------K------------------------IPQSLTSSGRFDFHVQLPAPAASERKAILE----- 751 (1134)
Q Consensus 721 --------------------~------------------------Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~----- 751 (1134)
. |-|.|. |||+..+.|...+.+++.+||.
T Consensus 380 slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfV--GRfPVlVplh~L~~~~Lv~VLtEPkna 457 (564)
T KOG0745|consen 380 SLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFV--GRFPVLVPLHSLDEDQLVRVLTEPKNA 457 (564)
T ss_pred hcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHh--cccceEeeccccCHHHHHHHHhcchhh
Confidence 0 112222 5999999999999999999885
Q ss_pred ------HHhhhc--ccCCCHHHHHHHhhhc--CCCChhhHHHHHHHHHHHHhccc
Q 001162 752 ------HEIQRR--SLECSDEILLDVASKC--DGYDAYDLEILVDRTVHAAVGRY 796 (1134)
Q Consensus 752 ------~~l~~~--~l~~~~~~l~~la~~t--eG~s~~DL~~Lv~~a~~~a~~r~ 796 (1134)
.++... .+.+++++++.+|... .+.-+|.|+.+++.++..++...
T Consensus 458 L~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfev 512 (564)
T KOG0745|consen 458 LGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFEV 512 (564)
T ss_pred HHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcccC
Confidence 222222 3457888888887763 55557889999999998887664
No 311
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.89 E-value=2.4e-08 Score=112.38 Aligned_cols=66 Identities=26% Similarity=0.432 Sum_probs=48.0
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcC--CcEEEEeCcccch
Q 001162 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPELLN 916 (1134)
Q Consensus 843 ~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~--~~~i~i~~~el~~ 916 (1134)
.+-++|+.+++++.--.+.+- +.+.-.++++||.||||||||.+|-++|+++| .||+.++++++++
T Consensus 23 ~~GlVGQ~~AReAagiiv~mI--------k~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMI--------KEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHH--------HTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred cccccChHHHHHHHHHHHHHH--------hcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 356899999999887665532 22333467899999999999999999999997 8999999888743
No 312
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.89 E-value=1.3e-08 Score=116.39 Aligned_cols=81 Identities=16% Similarity=0.293 Sum_probs=56.4
Q ss_pred CeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----cccccccCCCcEEEEEecCCCC-CCChhhccCC
Q 001162 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE-KIPQSLTSSG 730 (1134)
Q Consensus 656 PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~V~vIattn~~~-~Ld~aL~~~g 730 (1134)
.++||+||++.+-+ .+...|.+.|+.-. ..........++++|+++|..+ .++++|..
T Consensus 129 ~GiL~lDEInrl~~---------------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld-- 191 (334)
T PRK13407 129 RGYLYIDEVNLLED---------------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD-- 191 (334)
T ss_pred CCeEEecChHhCCH---------------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--
Confidence 35999999998731 45556666665421 1111111223689999999755 58889998
Q ss_pred CccccccCCCCCH-HHHHHHHHHH
Q 001162 731 RFDFHVQLPAPAA-SERKAILEHE 753 (1134)
Q Consensus 731 RF~~~i~l~~P~~-eeR~~IL~~~ 753 (1134)
||...+.+++|.. ++|.+|++..
T Consensus 192 RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 192 RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred hcceEEEcCCCCcHHHHHHHHHHh
Confidence 9999999988876 8999999864
No 313
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.89 E-value=1.7e-09 Score=113.77 Aligned_cols=45 Identities=27% Similarity=0.459 Sum_probs=36.9
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc
Q 001162 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (1134)
Q Consensus 843 ~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~ 902 (1134)
|.+|.|++.+|+.|.-.... ..|+||+||||||||++|+++...+
T Consensus 2 f~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 68999999999999776553 2489999999999999999999866
No 314
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.88 E-value=1.9e-08 Score=115.23 Aligned_cols=143 Identities=17% Similarity=0.159 Sum_probs=86.4
Q ss_pred CeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----cccccccCCCcEEEEEecCCCC-CCChhhccCC
Q 001162 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE-KIPQSLTSSG 730 (1134)
Q Consensus 656 PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~V~vIattn~~~-~Ld~aL~~~g 730 (1134)
.++|||||++.+-+ .+...|.+.|+.-. ..........++++|++.|..+ .++++|..
T Consensus 132 ~GvL~lDEi~~L~~---------------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld-- 194 (337)
T TIGR02030 132 RGILYIDEVNLLED---------------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD-- 194 (337)
T ss_pred CCEEEecChHhCCH---------------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--
Confidence 46999999998731 34455555554321 1110111123588888888755 68899999
Q ss_pred CccccccCCCCCH-HHHHHHHHHHhhh-----------------------------cccCCCHHHHHHHhh---hcCCCC
Q 001162 731 RFDFHVQLPAPAA-SERKAILEHEIQR-----------------------------RSLECSDEILLDVAS---KCDGYD 777 (1134)
Q Consensus 731 RF~~~i~l~~P~~-eeR~~IL~~~l~~-----------------------------~~l~~~~~~l~~la~---~teG~s 777 (1134)
||...+.++.|+. ++|.+|++..... ..+.++++.+.+++. .+..-+
T Consensus 195 Rf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s 274 (337)
T TIGR02030 195 RFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDG 274 (337)
T ss_pred hcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCC
Confidence 9999999998876 8899998773211 112355555444433 333334
Q ss_pred hhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhccccc
Q 001162 778 AYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1134)
Q Consensus 778 ~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~ 826 (1134)
+|....+++.|...|..+ +...++.+|+..+..-..+.
T Consensus 275 ~Ra~i~l~raArA~Aal~-----------GR~~V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 275 LRGELTLNRAAKALAAFE-----------GRTEVTVDDIRRVAVLALRH 312 (337)
T ss_pred CcHHHHHHHHHHHHHHHc-----------CCCCCCHHHHHHHHHHHHHH
Confidence 555555666555545433 33568889988766554443
No 315
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.88 E-value=2.6e-08 Score=114.05 Aligned_cols=171 Identities=16% Similarity=0.205 Sum_probs=98.7
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCcee-eEEE----
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV-AHIV---- 625 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~-~~~~---- 625 (1134)
..|..++|.+..+..++-.+ .+ +..+++||.|++|||||+++|++++.+....... .++.
T Consensus 14 ~pf~~ivGq~~~k~al~~~~---~~------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNV---ID------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCHHHHhChHHHHHHHHHhc---cC------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 34778888887766554322 21 3347899999999999999999998875321100 0000
Q ss_pred --EEeccccccc-------------------chhhHHHH------HHHHHHHHh---------hcCCeEEEEcccchhcc
Q 001162 626 --FVCCSRLSLE-------------------KGPIIRQA------LSNFISEAL---------DHAPSIVIFDNLDSIIS 669 (1134)
Q Consensus 626 --~v~~s~l~~~-------------------~~~~~~~~------l~~~f~~a~---------~~~PsIL~IDEiD~L~~ 669 (1134)
...|+.+.+. ..+..... +...|..+. ....++||+||++.+-+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 0001000000 00001111 111222111 11246999999998841
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhc----cccccccCCCcEEEEEecCCCC-CCChhhccCCCccccccCCCCC-H
Q 001162 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE-KIPQSLTSSGRFDFHVQLPAPA-A 743 (1134)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~V~vIattn~~~-~Ld~aL~~~gRF~~~i~l~~P~-~ 743 (1134)
.+...|.+.|+.-. ..........++++|+|.|..+ .+++.|.. ||...+.+..|+ .
T Consensus 159 ---------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~ 221 (350)
T CHL00081 159 ---------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDP 221 (350)
T ss_pred ---------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCCh
Confidence 34444555554311 0011111223688888888755 58999999 999999999997 5
Q ss_pred HHHHHHHHHH
Q 001162 744 SERKAILEHE 753 (1134)
Q Consensus 744 eeR~~IL~~~ 753 (1134)
+++.+|++..
T Consensus 222 ~~e~~il~~~ 231 (350)
T CHL00081 222 ELRVKIVEQR 231 (350)
T ss_pred HHHHHHHHhh
Confidence 9999999864
No 316
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.87 E-value=2.3e-08 Score=123.07 Aligned_cols=203 Identities=16% Similarity=0.168 Sum_probs=128.8
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s 630 (1134)
..+..++|.+..+.++++.+..+... ..+|||+|++||||+++|++|....... ..+++.++|.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~-------------~~pvli~Ge~GtGK~~lA~~ih~~s~r~---~~pfv~i~c~ 256 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARS-------------NSTVLLRGESGTGKELIAKAIHYLSPRA---KRPFVKVNCA 256 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCc-------------CCCEEEECCCCccHHHHHHHHHHhCCCC---CCCeEEeecC
Confidence 35678899999999999988776542 2569999999999999999999865321 2679999999
Q ss_pred cccccchhhHHHHHHHHHHH---------------HhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHH
Q 001162 631 RLSLEKGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMD 695 (1134)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~---------------a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld 695 (1134)
.+..... .. .+|.. ......++|||||+|.|- . .+...|...++
T Consensus 257 ~~~~~~~---~~---~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~-----------~----~~Q~~Ll~~l~ 315 (534)
T TIGR01817 257 ALSETLL---ES---ELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEIS-----------P----AFQAKLLRVLQ 315 (534)
T ss_pred CCCHHHH---HH---HHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCC-----------H----HHHHHHHHHHh
Confidence 8743211 11 11110 011235799999999984 1 23334444443
Q ss_pred Hhc--cccccccCCCcEEEEEecCCC-------CCCChhhccCCCcc-ccccCCCCC--HHHHHHHHHHHhhhc------
Q 001162 696 EYG--EKRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPA--ASERKAILEHEIQRR------ 757 (1134)
Q Consensus 696 ~~~--~~~~~~~~~~~V~vIattn~~-------~~Ld~aL~~~gRF~-~~i~l~~P~--~eeR~~IL~~~l~~~------ 757 (1134)
.-. ..........++.+|++|+.. ..+.+.|.. |+. ..|.+|+.. .++...|++.++...
T Consensus 316 ~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~ 393 (534)
T TIGR01817 316 EGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGR 393 (534)
T ss_pred cCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCC
Confidence 311 100000011247888887752 122333333 443 345676665 356666666665432
Q ss_pred ccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 001162 758 SLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1134)
Q Consensus 758 ~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a 792 (1134)
...++++.+..+..+..-.+.++|++++++++..+
T Consensus 394 ~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 394 PLTITPSAIRVLMSCKWPGNVRELENCLERTATLS 428 (534)
T ss_pred CCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 24689999999999876668999999999987543
No 317
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=4.7e-08 Score=110.12 Aligned_cols=96 Identities=30% Similarity=0.477 Sum_probs=75.4
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccch-hccccc-HHHHHHHHHHh----hhcCCeEEEEcCcccccCC
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIGAS-EQAVRDIFSKA----TAAAPCLLFFDEFDSIAPK 952 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~-~~~G~s-e~~v~~lf~~A----~~~~P~VLfiDEid~l~~~ 952 (1134)
.++||.||+|+|||.||+.||+-++.||...+|..|-. .|+|+. |..+..++..| .+++-.|+||||+|+|..+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 58999999999999999999999999999999998864 799986 56677787766 2334459999999999854
Q ss_pred CCCC--C-CcchhhHHHhHhhhccc
Q 001162 953 RGHD--N-TGVTDRVVNQFLTELDG 974 (1134)
Q Consensus 953 r~~~--~-~~~~~rv~~~lL~~ld~ 974 (1134)
...- . .-...-+...||+.++|
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred CccccccccccchhHHHHHHHHhcc
Confidence 3221 1 22235677788988876
No 318
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.87 E-value=8.9e-09 Score=118.58 Aligned_cols=212 Identities=17% Similarity=0.171 Sum_probs=128.1
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s 630 (1134)
..+..++|.+..+.+++++++.+- +...+||++|++||||+.+|+++....... ...+++.+||.
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~a-------------p~~~~vLi~GetGtGKel~A~~iH~~s~r~--~~~PFI~~NCa 139 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAYA-------------PSGLPVLIIGETGTGKELFARLIHALSARR--AEAPFIAFNCA 139 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhhC-------------CCCCcEEEecCCCccHHHHHHHHHHhhhcc--cCCCEEEEEHH
Confidence 446788999999999999987733 223679999999999999999999543221 34889999999
Q ss_pred cccccchhhH-HHHHHHHHHHHh--------hcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHh--cc
Q 001162 631 RLSLEKGPII-RQALSNFISEAL--------DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY--GE 699 (1134)
Q Consensus 631 ~l~~~~~~~~-~~~l~~~f~~a~--------~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~--~~ 699 (1134)
.+........ -..-+..|.-|. +...+.||+||++.+- .. ....|...++.- ..
T Consensus 140 ~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP-----------~~----~Q~kLl~~le~g~~~r 204 (403)
T COG1221 140 AYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLP-----------PE----GQEKLLRVLEEGEYRR 204 (403)
T ss_pred HhCcCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCC-----------Hh----HHHHHHHHHHcCceEe
Confidence 8765433211 000011111111 1234599999999884 22 233344444431 11
Q ss_pred ccccccCCCcEEEEEecCCCCCCCh------hhccCCCccccccCCCCCH--HHHHHHHHHHhh----hcccC---CCHH
Q 001162 700 KRKSSCGIGPIAFVASAQSLEKIPQ------SLTSSGRFDFHVQLPAPAA--SERKAILEHEIQ----RRSLE---CSDE 764 (1134)
Q Consensus 700 ~~~~~~~~~~V~vIattn~~~~Ld~------aL~~~gRF~~~i~l~~P~~--eeR~~IL~~~l~----~~~l~---~~~~ 764 (1134)
-.........|.+|++|+. .++. .|.+. |+...|++|+... +++..++..++. +.+.. .+++
T Consensus 205 vG~~~~~~~dVRli~AT~~--~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~ 281 (403)
T COG1221 205 VGGSQPRPVDVRLICATTE--DLEEAVLAGADLTRR-LNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPE 281 (403)
T ss_pred cCCCCCcCCCceeeecccc--CHHHHHHhhcchhhh-hcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHH
Confidence 1111112236889988884 3332 22221 5556677777654 445555555543 33333 2345
Q ss_pred HHHHHhhhcCCCChhhHHHHHHHHHHHHhcc
Q 001162 765 ILLDVASKCDGYDAYDLEILVDRTVHAAVGR 795 (1134)
Q Consensus 765 ~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r 795 (1134)
.+..+-.+.---+.++|++++++++..+...
T Consensus 282 a~~~L~~y~~pGNirELkN~Ve~~~~~~~~~ 312 (403)
T COG1221 282 ALRALLAYDWPGNIRELKNLVERAVAQASGE 312 (403)
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHHhccc
Confidence 6666666654448899999999999877543
No 319
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=5.6e-08 Score=111.50 Aligned_cols=177 Identities=16% Similarity=0.167 Sum_probs=112.7
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCce--eeEEEEEec
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL--VAHIVFVCC 629 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~--~~~~~~v~~ 629 (1134)
+|.++.|.+..++.+.+.+.. ...+..+||+||+|+|||++|+++|+.+...... ...+..+..
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~--------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~ 67 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK--------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP 67 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc--------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc
Confidence 466788888887777665522 2234558999999999999999999987532111 111222322
Q ss_pred ccccccchhhHHHHHHHHHHHH----hhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccccc
Q 001162 630 SRLSLEKGPIIRQALSNFISEA----LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC 705 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a----~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~ 705 (1134)
.+-..-..+. ++++.+.+ ......|++||++|.+.. ...+.|+..+++...
T Consensus 68 ~~~~~i~v~~----ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~---------------~a~naLLK~LEepp~------ 122 (313)
T PRK05564 68 INKKSIGVDD----IRNIIEEVNKKPYEGDKKVIIIYNSEKMTE---------------QAQNAFLKTIEEPPK------ 122 (313)
T ss_pred ccCCCCCHHH----HHHHHHHHhcCcccCCceEEEEechhhcCH---------------HHHHHHHHHhcCCCC------
Confidence 1101112223 44444433 223445999999998841 334566666665432
Q ss_pred CCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCC
Q 001162 706 GIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYD 777 (1134)
Q Consensus 706 ~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s 777 (1134)
.+++|.+|+.++.+.+.+++ |.. .++|++|+.++....+...+. .++++.+..++..+.|-.
T Consensus 123 ---~t~~il~~~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~ 184 (313)
T PRK05564 123 ---GVFIILLCENLEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIP 184 (313)
T ss_pred ---CeEEEEEeCChHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCH
Confidence 35666666778899999998 664 899999999998887765432 356666777777777643
No 320
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=5.6e-08 Score=112.95 Aligned_cols=184 Identities=17% Similarity=0.183 Sum_probs=114.1
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCce--e--------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL--V-------- 621 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~--~-------- 621 (1134)
.+.+|+|.+..++.+.+.+.. ...|..+||+||+|+||+++|.++|+.+-..... .
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~--------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRS--------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred chhhccChHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 567888998888877765432 2334569999999999999999999998532110 0
Q ss_pred ------------------eEEEEEec--cccccc-chhhHHHHHHHHHHHH----hhcCCeEEEEcccchhccCCCCCCC
Q 001162 622 ------------------AHIVFVCC--SRLSLE-KGPIIRQALSNFISEA----LDHAPSIVIFDNLDSIISSSSDPEG 676 (1134)
Q Consensus 622 ------------------~~~~~v~~--s~l~~~-~~~~~~~~l~~~f~~a----~~~~PsIL~IDEiD~L~~~~~~~~~ 676 (1134)
-.+.++.. ++-.+. ...-.-..++++.+.+ ....+.|++|||+|.+-.
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------- 155 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------- 155 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH-------
Confidence 01122211 010000 0000112234433332 234677999999998831
Q ss_pred CCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhh
Q 001162 677 SQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR 756 (1134)
Q Consensus 677 ~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~ 756 (1134)
...+.|+..+++... ..++|.+|+.++.+.+.+++ |.. .+.|++|+.++..+++....
T Consensus 156 --------~aanaLLK~LEepp~---------~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~-- 213 (365)
T PRK07471 156 --------NAANALLKVLEEPPA---------RSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAG-- 213 (365)
T ss_pred --------HHHHHHHHHHhcCCC---------CeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhc--
Confidence 334556666665432 35677788888888888888 764 89999999999999887643
Q ss_pred cccCCCHHHHHHHhhhcCCCChhhH
Q 001162 757 RSLECSDEILLDVASKCDGYDAYDL 781 (1134)
Q Consensus 757 ~~l~~~~~~l~~la~~teG~s~~DL 781 (1134)
....+..+..++..+.| ++...
T Consensus 214 --~~~~~~~~~~l~~~s~G-sp~~A 235 (365)
T PRK07471 214 --PDLPDDPRAALAALAEG-SVGRA 235 (365)
T ss_pred --ccCCHHHHHHHHHHcCC-CHHHH
Confidence 22344444667777777 44433
No 321
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.85 E-value=3.3e-09 Score=123.70 Aligned_cols=125 Identities=25% Similarity=0.327 Sum_probs=91.3
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccc--
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL-- 915 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~-- 915 (1134)
..|++|.|-...-..+.+..... -.....+|+.|.+||||..+|+++.+.+ +.+||.+||+.+-
T Consensus 242 y~f~~Iig~S~~m~~~~~~akr~-----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~ 310 (560)
T COG3829 242 YTFDDIIGESPAMLRVLELAKRI-----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPET 310 (560)
T ss_pred cchhhhccCCHHHHHHHHHHHhh-----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHH
Confidence 67889888777666665554432 1334679999999999999999999877 6899999997652
Q ss_pred -----------hhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc--c-----
Q 001162 916 -----------NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V----- 977 (1134)
Q Consensus 916 -----------~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~--~----- 977 (1134)
+.|.|.....-..+|+.|.++ -||+|||..| .-.+...||..|..-+ +
T Consensus 311 LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgem-----------pl~LQaKLLRVLQEkei~rvG~t~ 376 (560)
T COG3829 311 LLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERVGGTK 376 (560)
T ss_pred HHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccC-----------CHHHHHHHHHHHhhceEEecCCCC
Confidence 235565554456788888877 8999999988 3456667777765311 1
Q ss_pred --cccEEEEEecCCC
Q 001162 978 --LTGVFVFAATSRP 990 (1134)
Q Consensus 978 --~~~v~vIatTn~p 990 (1134)
.-.|-||||||+.
T Consensus 377 ~~~vDVRIIAATN~n 391 (560)
T COG3829 377 PIPVDVRIIAATNRN 391 (560)
T ss_pred ceeeEEEEEeccCcC
Confidence 1248999999983
No 322
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.83 E-value=3.3e-08 Score=123.29 Aligned_cols=135 Identities=16% Similarity=0.191 Sum_probs=85.9
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc------cccccch----hhH---HHHHHHHHHHHhhcCCe
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS------RLSLEKG----PII---RQALSNFISEALDHAPS 657 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s------~l~~~~~----~~~---~~~l~~~f~~a~~~~Ps 657 (1134)
..+||.||..||||+++..+|++.+ ..++.|+-- +..|.+. |.+ ++.+-..++ ...
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tg------hkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR-----~Gy 957 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETG------HKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALR-----RGY 957 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhC------ccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHh-----cCc
Confidence 4599999999999999999999988 556666532 2223222 111 122222222 334
Q ss_pred EEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----ccccc-ccCCCcEEEEEecCCCC------CCChhh
Q 001162 658 IVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKS-SCGIGPIAFVASAQSLE------KIPQSL 726 (1134)
Q Consensus 658 IL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~-~~~~~~V~vIattn~~~------~Ld~aL 726 (1134)
.+++||+.... ..+++.|.+++|... ...+. .....++.+.||-|+|. -+..++
T Consensus 958 WIVLDELNLAp---------------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAF 1022 (4600)
T COG5271 958 WIVLDELNLAP---------------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAF 1022 (4600)
T ss_pred EEEeeccccCc---------------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHH
Confidence 79999996432 145566666665422 22222 33344677777777654 366778
Q ss_pred ccCCCccccccCCCCCHHHHHHHHHHHh
Q 001162 727 TSSGRFDFHVQLPAPAASERKAILEHEI 754 (1134)
Q Consensus 727 ~~~gRF~~~i~l~~P~~eeR~~IL~~~l 754 (1134)
+. ||- .++|..-.+++...||+..+
T Consensus 1023 RN--RFl-E~hFddipedEle~ILh~rc 1047 (4600)
T COG5271 1023 RN--RFL-EMHFDDIPEDELEEILHGRC 1047 (4600)
T ss_pred Hh--hhH-hhhcccCcHHHHHHHHhccC
Confidence 77 886 78888888899999998644
No 323
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.82 E-value=1.1e-08 Score=106.25 Aligned_cols=122 Identities=20% Similarity=0.301 Sum_probs=79.1
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhc-cCCceeeEEEEEecccccccchhhHHHHHHHHHHHH----hhcCCeEEEEccc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLE-HHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEA----LDHAPSIVIFDNL 664 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~-~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a----~~~~PsIL~IDEi 664 (1134)
-..+||+||+|+|||.+|+++|+.+. ... .+++.+||+.+.. .+.....+...+..+ ......|||||||
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~---~~~~~~d~s~~~~--~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEi 77 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSE---RPLIRIDMSEYSE--GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEI 77 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSC---CEEEEEEGGGHCS--HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCc---cchHHHhhhcccc--cchHHhhhhhhhhcccceeeccchhhhhhHHH
Confidence 35699999999999999999999987 222 5789999999887 111111222222221 1122349999999
Q ss_pred chhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--cccccccCCCcEEEEEecCCCC
Q 001162 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKRKSSCGIGPIAFVASAQSLE 720 (1134)
Q Consensus 665 D~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~--~~~~~~~~~~~V~vIattn~~~ 720 (1134)
|++.+. ...........+.+.|+.+++.-. ..........++++|+|+|--.
T Consensus 78 dKa~~~----~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 78 DKAHPS----NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp GGCSHT----TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hhcccc----ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 999753 111122344577888888887532 2222234456899999999643
No 324
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.81 E-value=1.8e-08 Score=118.11 Aligned_cols=205 Identities=19% Similarity=0.220 Sum_probs=128.2
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~ 631 (1134)
....++|....+.++.+.+..+-... ..|||+|++||||-.+||+|.+.-.. ...+|+.+||..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~-------------a~VLI~GESGtGKElvAr~IH~~S~R---~~~PFVavNcaA 202 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSD-------------ASVLITGESGTGKELVARAIHQASPR---AKGPFIAVNCAA 202 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCC-------------CCEEEECCCCCcHHHHHHHHHhhCcc---cCCCceeeeccc
Confidence 35678899999999999987766544 56999999999999999999986432 237899999987
Q ss_pred ccccchh---------hHHHHHH---HHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHH-HHhc
Q 001162 632 LSLEKGP---------IIRQALS---NFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM-DEYG 698 (1134)
Q Consensus 632 l~~~~~~---------~~~~~l~---~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~l-d~~~ 698 (1134)
+.....+ .+..... ..|+.| ..+.||||||..+. .+.+.++++.|.+.- ....
T Consensus 203 ip~~l~ESELFGhekGAFTGA~~~r~G~fE~A---~GGTLfLDEI~~mp-----------l~~Q~kLLRvLqe~~~~rvG 268 (464)
T COG2204 203 IPENLLESELFGHEKGAFTGAITRRIGRFEQA---NGGTLFLDEIGEMP-----------LELQVKLLRVLQEREFERVG 268 (464)
T ss_pred CCHHHHHHHhhcccccCcCCcccccCcceeEc---CCceEEeeccccCC-----------HHHHHHHHHHHHcCeeEecC
Confidence 6543221 1111111 122322 35699999998762 333445555544321 1111
Q ss_pred cccccccCCCcEEEEEecCCC--C-----CCChhhccCCCccccccCCCCCHHHH----HHHHHHHhhh----cc---cC
Q 001162 699 EKRKSSCGIGPIAFVASAQSL--E-----KIPQSLTSSGRFDFHVQLPAPAASER----KAILEHEIQR----RS---LE 760 (1134)
Q Consensus 699 ~~~~~~~~~~~V~vIattn~~--~-----~Ld~aL~~~gRF~~~i~l~~P~~eeR----~~IL~~~l~~----~~---l~ 760 (1134)
+. ....-+|.||++||.. + .+-+.|.- |+. ++.+..|...+| --++++++.+ .+ ..
T Consensus 269 ~~---~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~ 342 (464)
T COG2204 269 GN---KPIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKG 342 (464)
T ss_pred CC---cccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCC
Confidence 11 1112268999999861 1 12223332 443 556665655444 3445554432 22 34
Q ss_pred CCHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 001162 761 CSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1134)
Q Consensus 761 ~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a 792 (1134)
++++.+..+..+..--+.++|++++++++..+
T Consensus 343 ~s~~a~~~L~~y~WPGNVREL~N~ver~~il~ 374 (464)
T COG2204 343 FSPEALAALLAYDWPGNVRELENVVERAVILS 374 (464)
T ss_pred CCHHHHHHHHhCCCChHHHHHHHHHHHHHhcC
Confidence 78888888888776668899999999998654
No 325
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.81 E-value=6.2e-08 Score=113.92 Aligned_cols=140 Identities=14% Similarity=0.178 Sum_probs=76.8
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc-----cccccc-hhhHHHHHHHHHHHHhhc---CCeEEE
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS-----RLSLEK-GPIIRQALSNFISEALDH---APSIVI 660 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s-----~l~~~~-~~~~~~~l~~~f~~a~~~---~PsIL~ 660 (1134)
.+++||+||||||||++|+++++.+.... ++.++.|. ++.|.. ..... -...|.....+ ...+||
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~----~F~~~~~~fttp~DLfG~l~i~~~~--~~g~f~r~~~G~L~~A~lLf 112 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNAR----AFEYLMTRFSTPEEVFGPLSIQALK--DEGRYQRLTSGYLPEAEIVF 112 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccC----cceeeeeeecCcHHhcCcHHHhhhh--hcCchhhhcCCccccccEEe
Confidence 47899999999999999999999875321 22223322 222211 00000 01112111111 234999
Q ss_pred EcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc-cccccccCCCcEEEEEecCCCCC---CChhhccCCCccccc
Q 001162 661 FDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-EKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFDFHV 736 (1134)
Q Consensus 661 IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~-~~~~~~~~~~~V~vIattn~~~~---Ld~aL~~~gRF~~~i 736 (1134)
+|||..+.+ .....|+..|.+.. .........+..+++++||.... ..+++.. ||...+
T Consensus 113 LDEI~rasp---------------~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri 175 (498)
T PRK13531 113 LDEIWKAGP---------------AILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRL 175 (498)
T ss_pred ecccccCCH---------------HHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEE
Confidence 999976531 45556666664322 11111112222344555564321 2247777 998889
Q ss_pred cCCCCC-HHHHHHHHHH
Q 001162 737 QLPAPA-ASERKAILEH 752 (1134)
Q Consensus 737 ~l~~P~-~eeR~~IL~~ 752 (1134)
.+|+|+ .++-.+|+..
T Consensus 176 ~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 176 WLDKVQDKANFRSMLTS 192 (498)
T ss_pred ECCCCCchHHHHHHHHc
Confidence 999997 4565777765
No 326
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.80 E-value=2.3e-08 Score=115.16 Aligned_cols=211 Identities=20% Similarity=0.251 Sum_probs=132.6
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
...+..|+|...++.++++.+..+..++ ..|||.|.+||||-.+||+|.+... ....+++++||
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd-------------~tVLi~GETGtGKElvAraIH~~S~---R~~kPfV~~NC 282 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKSD-------------STVLIRGETGTGKELVARAIHQLSP---RRDKPFVKLNC 282 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcCC-------------CeEEEecCCCccHHHHHHHHHhhCc---ccCCCceeeec
Confidence 4456789999999999999998876544 5699999999999999999998643 33478999999
Q ss_pred ccccccch-hhHHHHHHHHHHHHhhc--------CCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHH-HHHhcc
Q 001162 630 SRLSLEKG-PIIRQALSNFISEALDH--------APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI-MDEYGE 699 (1134)
Q Consensus 630 s~l~~~~~-~~~~~~l~~~f~~a~~~--------~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~-ld~~~~ 699 (1134)
..+...-. .++-..-+..|.-|... ..+-||+|||..| +...+.++++.|.+. ++...+
T Consensus 283 AAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel-----------PL~lQaKLLRvLQegEieRvG~ 351 (550)
T COG3604 283 AALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL-----------PLALQAKLLRVLQEGEIERVGG 351 (550)
T ss_pred cccchHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccC-----------CHHHHHHHHHHHhhcceeecCC
Confidence 87753322 11222222233333221 2458999999766 333444555555432 222222
Q ss_pred ccccccCCCcEEEEEecCCCCCCChhhccCC--------CccccccCCCCCHHHH----HHHHHHHhh----hc---ccC
Q 001162 700 KRKSSCGIGPIAFVASAQSLEKIPQSLTSSG--------RFDFHVQLPAPAASER----KAILEHEIQ----RR---SLE 760 (1134)
Q Consensus 700 ~~~~~~~~~~V~vIattn~~~~Ld~aL~~~g--------RF~~~i~l~~P~~eeR----~~IL~~~l~----~~---~l~ 760 (1134)
.+ .-.-.|.||++||+ ++-...+ .| |+. ++.+..|...+| --+...+++ +. .+.
T Consensus 352 ~r---~ikVDVRiIAATNR--DL~~~V~-~G~FRaDLYyRLs-V~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ 424 (550)
T COG3604 352 DR---TIKVDVRVIAATNR--DLEEMVR-DGEFRADLYYRLS-VFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILS 424 (550)
T ss_pred Cc---eeEEEEEEEeccch--hHHHHHH-cCcchhhhhhccc-ccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccc
Confidence 21 11226899999996 2222221 12 332 333444433333 223333333 22 345
Q ss_pred CCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcc
Q 001162 761 CSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGR 795 (1134)
Q Consensus 761 ~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r 795 (1134)
++.++++.+..+..-.+.++|+++++||+..+ .+
T Consensus 425 ls~~Al~~L~~y~wPGNVRELen~veRavlla-~~ 458 (550)
T COG3604 425 LSAEALELLSSYEWPGNVRELENVVERAVLLA-GR 458 (550)
T ss_pred cCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh-cc
Confidence 78899999998876668899999999999877 44
No 327
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.79 E-value=1.5e-08 Score=101.70 Aligned_cols=117 Identities=21% Similarity=0.360 Sum_probs=69.8
Q ss_pred eEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccccc------chhh-HH-HHHHHHHHHHhhcCCeEEEEcc
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE------KGPI-IR-QALSNFISEALDHAPSIVIFDN 663 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~------~~~~-~~-~~l~~~f~~a~~~~PsIL~IDE 663 (1134)
+|||+||||||||++++.+|+.++ ..+..+.|...... +.-. .. ......+-.+ ...+.+++|||
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~------~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a-~~~~~il~lDE 73 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG------RPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRA-MRKGGILVLDE 73 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT------CEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTT-HHEEEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh------cceEEEEeccccccccceeeeeeccccccccccccccc-ccceeEEEECC
Confidence 589999999999999999999996 66777777653221 1000 00 0000000000 12577999999
Q ss_pred cchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc----cccccCCC------cEEEEEecCCCC----CCChhhccC
Q 001162 664 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK----RKSSCGIG------PIAFVASAQSLE----KIPQSLTSS 729 (1134)
Q Consensus 664 iD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~----~~~~~~~~------~V~vIattn~~~----~Ld~aL~~~ 729 (1134)
++..- ..+...|..+++...-. ........ ++.+|+|+|+.+ .++++|++
T Consensus 74 in~a~---------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~- 137 (139)
T PF07728_consen 74 INRAP---------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD- 137 (139)
T ss_dssp CGG-----------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT-
T ss_pred cccCC---------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh-
Confidence 98763 25666677776643211 11111111 389999999988 89999998
Q ss_pred CCc
Q 001162 730 GRF 732 (1134)
Q Consensus 730 gRF 732 (1134)
||
T Consensus 138 -Rf 139 (139)
T PF07728_consen 138 -RF 139 (139)
T ss_dssp -T-
T ss_pred -hC
Confidence 76
No 328
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.78 E-value=7.4e-08 Score=121.92 Aligned_cols=205 Identities=15% Similarity=0.188 Sum_probs=124.8
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s 630 (1134)
..|.++.|....+..+.+.+..+... ..+|||+|++|||||++|++|....... ..+++.++|.
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~-------------~~pVLI~GE~GTGK~~lA~~ih~~s~r~---~~~~v~i~c~ 436 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQS-------------DSTVLILGETGTGKELIARAIHNLSGRN---NRRMVKMNCA 436 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCC-------------CCCEEEECCCCcCHHHHHHHHHHhcCCC---CCCeEEEecc
Confidence 45668899999999999988765432 2569999999999999999999865322 2689999998
Q ss_pred cccccchhh-------------HHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q 001162 631 RLSLEKGPI-------------IRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1134)
Q Consensus 631 ~l~~~~~~~-------------~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~ 697 (1134)
.+....... .... ...|+. ...++|||||++.+- . .+...|.+.++.-
T Consensus 437 ~~~~~~~~~~lfg~~~~~~~g~~~~~-~g~le~---a~~GtL~Ldei~~L~-----------~----~~Q~~L~~~l~~~ 497 (686)
T PRK15429 437 AMPAGLLESDLFGHERGAFTGASAQR-IGRFEL---ADKSSLFLDEVGDMP-----------L----ELQPKLLRVLQEQ 497 (686)
T ss_pred cCChhHhhhhhcCcccccccccccch-hhHHHh---cCCCeEEEechhhCC-----------H----HHHHHHHHHHHhC
Confidence 764321110 0001 112332 235799999999983 2 3333444444331
Q ss_pred c--cccccccCCCcEEEEEecCCCC-------CCChhhccCCCcc-ccccCCCCCH--HHHHHHHHHHhhhc----c--c
Q 001162 698 G--EKRKSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQRR----S--L 759 (1134)
Q Consensus 698 ~--~~~~~~~~~~~V~vIattn~~~-------~Ld~aL~~~gRF~-~~i~l~~P~~--eeR~~IL~~~l~~~----~--l 759 (1134)
. ..........++.+|++|+..- .+...|.. |+. ..|.+|+... ++...+++.++.+. + +
T Consensus 498 ~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~ 575 (686)
T PRK15429 498 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNI 575 (686)
T ss_pred CEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCC
Confidence 1 1000011123578898887521 12222222 332 2345554442 34444555554321 2 2
Q ss_pred -CCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 001162 760 -ECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1134)
Q Consensus 760 -~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a 792 (1134)
.++++.+..+..+..-.+.++|++++++++..+
T Consensus 576 ~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 576 DSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred CCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 378899999988877778999999999998654
No 329
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=5e-08 Score=111.77 Aligned_cols=133 Identities=21% Similarity=0.268 Sum_probs=98.2
Q ss_pred CCCCceEEEcCCCCchhHHHHHHHHHcCCc-------------------------EEEEeCcccch--------hc----
Q 001162 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------------------FISVKGPELLN--------KY---- 918 (1134)
Q Consensus 876 ~~~~~vLL~GppGtGKT~lA~alA~~~~~~-------------------------~i~i~~~el~~--------~~---- 918 (1134)
+.+.++||+||+|+||+++|+++|+.+... +..+.+..... .|
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 556789999999999999999999877331 22222110000 00
Q ss_pred --cc---------ccHHHHHHHHHHh----hhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEE
Q 001162 919 --IG---------ASEQAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFV 983 (1134)
Q Consensus 919 --~G---------~se~~v~~lf~~A----~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~v 983 (1134)
.| -.-+.+|++.+.+ ..+...|++||++|.| .....|.||+.|+ ++..++++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLE--EPp~~t~f 165 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-----------NVAAANALLKTLE--EPPPGTVF 165 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-----------CHHHHHHHHHHhc--CCCcCcEE
Confidence 00 1235677776654 2344569999999998 5678899999999 77888999
Q ss_pred EEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHH
Q 001162 984 FAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVI 1024 (1134)
Q Consensus 984 IatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~ 1024 (1134)
|.+|++|+.+.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 166 iL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 166 LLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 9999999999999999 66 57899999999998888653
No 330
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.78 E-value=4.3e-08 Score=114.41 Aligned_cols=138 Identities=17% Similarity=0.217 Sum_probs=80.3
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhccCCce-eeEEEEEe----ccccc-ccchh-----hHHHHHHHHHHHHhh--cCC
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-VAHIVFVC----CSRLS-LEKGP-----IIRQALSNFISEALD--HAP 656 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~~~~~~-~~~~~~v~----~s~l~-~~~~~-----~~~~~l~~~f~~a~~--~~P 656 (1134)
.++++|+||||||||++|+.+|..+...... ....+.+. ..++. +.... .....+.+++..|.. ..|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 3679999999999999999999988532110 11112221 11222 11011 011234455566654 357
Q ss_pred eEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc------------cc-cccccCCCcEEEEEecCCCC---
Q 001162 657 SIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG------------EK-RKSSCGIGPIAFVASAQSLE--- 720 (1134)
Q Consensus 657 sIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~------------~~-~~~~~~~~~V~vIattn~~~--- 720 (1134)
.+|||||+++.-. .+++..+..+++.-. .. ......+.++.+|||+|..+
T Consensus 274 ~vliIDEINRani--------------~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~ 339 (459)
T PRK11331 274 YVFIIDEINRANL--------------SKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSL 339 (459)
T ss_pred cEEEEehhhccCH--------------HHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccch
Confidence 8999999987531 122333333333210 00 11244566899999999977
Q ss_pred -CCChhhccCCCccccccCCC-CCHH
Q 001162 721 -KIPQSLTSSGRFDFHVQLPA-PAAS 744 (1134)
Q Consensus 721 -~Ld~aL~~~gRF~~~i~l~~-P~~e 744 (1134)
.+|.+|+| ||. .+++.+ ++.+
T Consensus 340 ~~lD~AlrR--RF~-fi~i~p~~~~~ 362 (459)
T PRK11331 340 AVVDYALRR--RFS-FIDIEPGFDTP 362 (459)
T ss_pred hhccHHHHh--hhh-eEEecCCCChH
Confidence 68999999 996 566654 4443
No 331
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.78 E-value=8.8e-08 Score=116.99 Aligned_cols=208 Identities=14% Similarity=0.158 Sum_probs=125.2
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s 630 (1134)
..|.++.|....+.++++.+..+... ..+|||+|++||||+++|+++...... ...+++.++|.
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~-------------~~pvlI~GE~GtGK~~lA~aiH~~s~r---~~~pfv~inca 264 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAML-------------DAPLLITGDTGTGKDLLAYACHLRSPR---GKKPFLALNCA 264 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCC-------------CCCEEEECCCCccHHHHHHHHHHhCCC---CCCCeEEeccc
Confidence 45778899999999999988665432 245999999999999999998775422 22678899999
Q ss_pred cccccchhhH-----H-------HHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 001162 631 RLSLEKGPII-----R-------QALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 698 (1134)
Q Consensus 631 ~l~~~~~~~~-----~-------~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~ 698 (1134)
.+........ . ..-..+|+.| ..+.|||||+|.|. ...+..+.+++.+. .+.
T Consensus 265 ~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~-----------~~~Q~~Ll~~l~~~--~~~ 328 (520)
T PRK10820 265 SIPDDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMS-----------PRMQAKLLRFLNDG--TFR 328 (520)
T ss_pred cCCHHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCC-----------HHHHHHHHHHHhcC--Ccc
Confidence 8753211100 0 0000123222 35689999999984 22233444443221 011
Q ss_pred cccccccCCCcEEEEEecCCC-C------CCChhhccCCCcc-ccccCCCCCH--HHHHHHHHHHhh----hcc---cCC
Q 001162 699 EKRKSSCGIGPIAFVASAQSL-E------KIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQ----RRS---LEC 761 (1134)
Q Consensus 699 ~~~~~~~~~~~V~vIattn~~-~------~Ld~aL~~~gRF~-~~i~l~~P~~--eeR~~IL~~~l~----~~~---l~~ 761 (1134)
..........++.+|++|+.. . .+.+.|.. |+. ..+++|+... +++..++..++. +.+ ..+
T Consensus 329 ~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~l 406 (520)
T PRK10820 329 RVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKL 406 (520)
T ss_pred cCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 111111112257888887652 1 23344444 443 3456666553 344445444443 232 357
Q ss_pred CHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 001162 762 SDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1134)
Q Consensus 762 ~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a 792 (1134)
+++.+..+..+..-.+.++|++++.+|+..+
T Consensus 407 s~~a~~~L~~y~WPGNvreL~nvl~~a~~~~ 437 (520)
T PRK10820 407 AADLNTVLTRYGWPGNVRQLKNAIYRALTQL 437 (520)
T ss_pred CHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC
Confidence 8999999988866668899999999987644
No 332
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.78 E-value=1.6e-07 Score=114.61 Aligned_cols=206 Identities=16% Similarity=0.182 Sum_probs=126.7
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccc
Q 001162 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (1134)
Q Consensus 553 ~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l 632 (1134)
...++|....+.++.+.+..+... +.+|||+|++||||+++|+++....... ..+++.++|..+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~-------------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~---~~p~v~v~c~~~ 249 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAAS-------------DLNVLILGETGVGKELVARAIHAASPRA---DKPLVYLNCAAL 249 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCC-------------CCcEEEECCCCccHHHHHHHHHHhCCcC---CCCeEEEEcccC
Confidence 456788899999999988775432 3679999999999999999999975422 267899999987
Q ss_pred cccchhh-H----HH----HH---HHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--
Q 001162 633 SLEKGPI-I----RQ----AL---SNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-- 698 (1134)
Q Consensus 633 ~~~~~~~-~----~~----~l---~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~-- 698 (1134)
....... + +. .. ...|+. ...+.|||||+|.|. . .+...|.+.++.-.
T Consensus 250 ~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~---a~gGtL~ldeI~~L~-----------~----~~Q~~Ll~~l~~~~~~ 311 (509)
T PRK05022 250 PESLAESELFGHVKGAFTGAISNRSGKFEL---ADGGTLFLDEIGELP-----------L----ALQAKLLRVLQYGEIQ 311 (509)
T ss_pred ChHHHHHHhcCccccccCCCcccCCcchhh---cCCCEEEecChhhCC-----------H----HHHHHHHHHHhcCCEe
Confidence 5321110 0 00 00 002222 235689999999984 2 23333444443211
Q ss_pred cccccccCCCcEEEEEecCCC-------CCCChhhccCCCcc-ccccCCCCCH--HHHHHHHHHHhhh-------cccCC
Q 001162 699 EKRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR-------RSLEC 761 (1134)
Q Consensus 699 ~~~~~~~~~~~V~vIattn~~-------~~Ld~aL~~~gRF~-~~i~l~~P~~--eeR~~IL~~~l~~-------~~l~~ 761 (1134)
..........++.+|++|+.. ..+.+.|.. |+. ..|++|+... ++...+++.++.+ ....+
T Consensus 312 ~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~ 389 (509)
T PRK05022 312 RVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRL 389 (509)
T ss_pred eCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCC
Confidence 100001111257889888752 123333433 443 2345555543 3444555555432 22458
Q ss_pred CHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhc
Q 001162 762 SDEILLDVASKCDGYDAYDLEILVDRTVHAAVG 794 (1134)
Q Consensus 762 ~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~ 794 (1134)
+++.+..+..+.--.+.++|++++++++..+..
T Consensus 390 s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 390 SPAAQAALLAYDWPGNVRELEHVISRAALLARA 422 (509)
T ss_pred CHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcCC
Confidence 999999999988777999999999999876643
No 333
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.78 E-value=8.3e-08 Score=99.10 Aligned_cols=133 Identities=23% Similarity=0.331 Sum_probs=92.3
Q ss_pred ChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcC-----------------------C
Q 001162 848 GLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-----------------------L 904 (1134)
Q Consensus 848 gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~-----------------------~ 904 (1134)
|++++.+.|...+..- +.+..+||+||+|+||+++|.++|+.+- -
T Consensus 1 gq~~~~~~L~~~~~~~------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCT------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcC------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 6778888888877632 3445689999999999999999998662 1
Q ss_pred cEEEEeCcccchhcccccHHHHHHHHHHhh----hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccccccc
Q 001162 905 RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTG 980 (1134)
Q Consensus 905 ~~i~i~~~el~~~~~G~se~~v~~lf~~A~----~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~ 980 (1134)
+++.++..+-.. .-.-+.++++...+. .+...|++|||+|.| ...+.|.||+.|+ ++..+
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----------~~~a~NaLLK~LE--epp~~ 132 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----------TEEAQNALLKTLE--EPPEN 132 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHH--STTTT
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----------hHHHHHHHHHHhc--CCCCC
Confidence 344444332100 113466777777663 344679999999998 6789999999998 66678
Q ss_pred EEEEEecCCCCccchhhcCcCcccceeecCC
Q 001162 981 VFVFAATSRPDLLDAALLRPGRLDRLLFCDF 1011 (1134)
Q Consensus 981 v~vIatTn~p~~ld~allrpgRfd~~i~~~~ 1011 (1134)
+++|.+|+.++.+-|.+++ |+- .+.|++
T Consensus 133 ~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~ 160 (162)
T PF13177_consen 133 TYFILITNNPSKILPTIRS--RCQ-VIRFRP 160 (162)
T ss_dssp EEEEEEES-GGGS-HHHHT--TSE-EEEE--
T ss_pred EEEEEEECChHHChHHHHh--hce-EEecCC
Confidence 8899999999999999999 543 445543
No 334
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.77 E-value=4.5e-08 Score=123.06 Aligned_cols=125 Identities=19% Similarity=0.247 Sum_probs=78.4
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccch-
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN- 916 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~- 916 (1134)
..|+++.|....-+.+.+.+.... ....++||+|++||||+++|+++.+.. +.+|+.++|..+-.
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAA-----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 357777777665555555444321 223469999999999999999999876 47999999987531
Q ss_pred ----hccccc----HHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc--cc-------c
Q 001162 917 ----KYIGAS----EQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--VL-------T 979 (1134)
Q Consensus 917 ----~~~G~s----e~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~--~~-------~ 979 (1134)
...|.. .......|+.|.+ .+||||||+.|. ..+...|+..++.-. .. -
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a~~---GtL~ldei~~l~-----------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~ 456 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELAHG---GTLFLEKVEYLS-----------PELQSALLQVLKTGVITRLDSRRLIPV 456 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeECCC---CEEEEcChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceEEe
Confidence 122211 1111123444433 499999999983 345556666554211 11 1
Q ss_pred cEEEEEecCCC
Q 001162 980 GVFVFAATSRP 990 (1134)
Q Consensus 980 ~v~vIatTn~p 990 (1134)
++-||+||+..
T Consensus 457 ~~riI~~t~~~ 467 (638)
T PRK11388 457 DVRVIATTTAD 467 (638)
T ss_pred eEEEEEeccCC
Confidence 46788888864
No 335
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.77 E-value=8.1e-08 Score=108.14 Aligned_cols=102 Identities=18% Similarity=0.201 Sum_probs=65.4
Q ss_pred CeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCC------------CCCCC
Q 001162 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS------------LEKIP 723 (1134)
Q Consensus 656 PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~------------~~~Ld 723 (1134)
|+||||||+|.|- ..-+.+|.+.++.-.. | ++|.+||+ ++-+|
T Consensus 279 pGVLFIDEvHmLD---------------iEcFsfLnralEs~~s---------P-iiIlATNRg~~~irGt~~~sphGiP 333 (398)
T PF06068_consen 279 PGVLFIDEVHMLD---------------IECFSFLNRALESELS---------P-IIILATNRGITKIRGTDIISPHGIP 333 (398)
T ss_dssp E-EEEEESGGGSB---------------HHHHHHHHHHHTSTT------------EEEEEES-SEEE-BTTS-EEETT--
T ss_pred cceEEecchhhcc---------------HHHHHHHHHHhcCCCC---------c-EEEEecCceeeeccCccCcCCCCCC
Confidence 8899999999883 2556777777764221 3 45555663 45577
Q ss_pred hhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHH
Q 001162 724 QSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILV 785 (1134)
Q Consensus 724 ~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv 785 (1134)
..|+. |+- .+...+|+.++..+|++..++..++.++++.+..++......+-+..-+|+
T Consensus 334 ~DlLD--Rll-II~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi 392 (398)
T PF06068_consen 334 LDLLD--RLL-IIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLI 392 (398)
T ss_dssp HHHHT--TEE-EEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCH
T ss_pred cchHh--hcE-EEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhh
Confidence 78887 764 788999999999999999999999999999988888766555555444443
No 336
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=1.8e-07 Score=107.37 Aligned_cols=156 Identities=17% Similarity=0.259 Sum_probs=102.0
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhccCCce------------------eeEEEEEecccc-cccchhhHHHHHHHHHHH
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDL------------------VAHIVFVCCSRL-SLEKGPIIRQALSNFISE 650 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~~~~~~------------------~~~~~~v~~s~l-~~~~~~~~~~~l~~~f~~ 650 (1134)
+..+||+||+|+|||++|+++|+.+...... .-.+..+....- ..-..+.++..+..+...
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~ 101 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT 101 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc
Confidence 4569999999999999999999998642110 012233322211 112334444433333333
Q ss_pred HhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCC
Q 001162 651 ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSG 730 (1134)
Q Consensus 651 a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~g 730 (1134)
.......|++||++|.+.. .-.+.|+..+++... ++++|.+|+.++.+.|.++|
T Consensus 102 ~~~~~~kv~iI~~a~~m~~---------------~aaNaLLK~LEEPp~---------~~~fiL~t~~~~~ll~TI~S-- 155 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAMNR---------------NAANALLKSLEEPSG---------DTVLLLISHQPSRLLPTIKS-- 155 (328)
T ss_pred cccCCCeEEEECChhhCCH---------------HHHHHHHHHHhCCCC---------CeEEEEEECChhhCcHHHHh--
Confidence 3334456999999999851 445666677776442 47888999999999999999
Q ss_pred CccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCC
Q 001162 731 RFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGY 776 (1134)
Q Consensus 731 RF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~ 776 (1134)
|.. .+.|++|+.++..+.|..... ...++....++....|-
T Consensus 156 Rc~-~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~l~la~Gs 196 (328)
T PRK05707 156 RCQ-QQACPLPSNEESLQWLQQALP----ESDERERIELLTLAGGS 196 (328)
T ss_pred hce-eeeCCCcCHHHHHHHHHHhcc----cCChHHHHHHHHHcCCC
Confidence 776 699999999998888865431 23444455566666663
No 337
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.76 E-value=7.7e-08 Score=120.99 Aligned_cols=202 Identities=13% Similarity=0.173 Sum_probs=124.1
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s 630 (1134)
..|.++.|.+..+.++++.+..+... ..+|||+|++||||+++|+++...... ...+++.+||.
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~-------------~~pvli~Ge~GtGK~~~A~~ih~~s~r---~~~pfv~vnc~ 385 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKS-------------SFPVLLCGEEGVGKALLAQAIHNESER---AAGPYIAVNCQ 385 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCc-------------CCCEEEECCCCcCHHHHHHHHHHhCCc---cCCCeEEEECC
Confidence 34677889999999999988765542 256999999999999999999986532 22679999999
Q ss_pred cccccchhhHHHHHHHHHHH------------HhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 001162 631 RLSLEKGPIIRQALSNFISE------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 698 (1134)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~------------a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~ 698 (1134)
.+..... -.++|.. ......+.|||||++.|- . .+...|.+.++.-.
T Consensus 386 ~~~~~~~------~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~-----------~----~~Q~~Ll~~l~~~~ 444 (638)
T PRK11388 386 LYPDEAL------AEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLS-----------P----ELQSALLQVLKTGV 444 (638)
T ss_pred CCChHHH------HHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCC-----------H----HHHHHHHHHHhcCc
Confidence 8753211 1122221 111235789999999983 2 23334444443211
Q ss_pred --cccccccCCCcEEEEEecCCCC-------CCChhhccCCCc-cccccCCCCCH--HHHHHHHHHHhhhc------ccC
Q 001162 699 --EKRKSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRF-DFHVQLPAPAA--SERKAILEHEIQRR------SLE 760 (1134)
Q Consensus 699 --~~~~~~~~~~~V~vIattn~~~-------~Ld~aL~~~gRF-~~~i~l~~P~~--eeR~~IL~~~l~~~------~l~ 760 (1134)
..+.......++.+|++|+..- .+.+.|.. |+ ...|.+|+... ++...+++.++... .+.
T Consensus 445 ~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~ 522 (638)
T PRK11388 445 ITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYY--ALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLK 522 (638)
T ss_pred EEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhh--hhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCC
Confidence 0000000011477888887521 12222222 23 23345555543 34455555555432 245
Q ss_pred CCHHHHHHHhhhcCCCChhhHHHHHHHHHHH
Q 001162 761 CSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1134)
Q Consensus 761 ~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~ 791 (1134)
++++.+..+..+.--.+.++|++++++++..
T Consensus 523 ~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 523 IDDDALARLVSYRWPGNDFELRSVIENLALS 553 (638)
T ss_pred cCHHHHHHHHcCCCCChHHHHHHHHHHHHHh
Confidence 7899999999988666889999999998754
No 338
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.76 E-value=9.3e-08 Score=118.14 Aligned_cols=51 Identities=31% Similarity=0.378 Sum_probs=43.4
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCc
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR 905 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~ 905 (1134)
...++++.|++++++.+...+.. +.+++|+||||||||++++++|+.++..
T Consensus 14 ~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 14 ERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 35788999999999998887663 1389999999999999999999998654
No 339
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.75 E-value=7.5e-08 Score=95.06 Aligned_cols=76 Identities=30% Similarity=0.420 Sum_probs=56.3
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccch--------------hhHHHHHHHHHHHHhhcC
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKG--------------PIIRQALSNFISEALDHA 655 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~--------------~~~~~~l~~~f~~a~~~~ 655 (1134)
+.+++|+||||||||++++.+|..+.... ..+++++++....... ......+...+..+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 35799999999999999999999987432 2477777776543211 122344667777777777
Q ss_pred CeEEEEcccchhc
Q 001162 656 PSIVIFDNLDSII 668 (1134)
Q Consensus 656 PsIL~IDEiD~L~ 668 (1134)
+.++++||++.+.
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 8999999999886
No 340
>PHA02244 ATPase-like protein
Probab=98.74 E-value=1.9e-07 Score=106.30 Aligned_cols=126 Identities=16% Similarity=0.257 Sum_probs=75.9
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc----cccccchhhHHHHHH-HHHHHHhhcCCeEEEEcccc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS----RLSLEKGPIIRQALS-NFISEALDHAPSIVIFDNLD 665 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s----~l~~~~~~~~~~~l~-~~f~~a~~~~PsIL~IDEiD 665 (1134)
.++||+||||||||++|+++|..++ .+++.+++. .+.+..... ..+. .-|-.+. ..+++|+|||++
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg------~pfv~In~l~d~~~L~G~i~~~--g~~~dgpLl~A~-~~GgvLiLDEId 190 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALD------LDFYFMNAIMDEFELKGFIDAN--GKFHETPFYEAF-KKGGLFFIDEID 190 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC------CCEEEEecChHHHhhccccccc--ccccchHHHHHh-hcCCEEEEeCcC
Confidence 5699999999999999999999986 455555531 111100000 0011 1122222 356799999999
Q ss_pred hhccCCCCCCCCCCchhHHHHHHHHHHHHHH-h-ccccccccCCCcEEEEEecCCC-----------CCCChhhccCCCc
Q 001162 666 SIISSSSDPEGSQPSTSVIALTKFLVDIMDE-Y-GEKRKSSCGIGPIAFVASAQSL-----------EKIPQSLTSSGRF 732 (1134)
Q Consensus 666 ~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~-~-~~~~~~~~~~~~V~vIattn~~-----------~~Ld~aL~~~gRF 732 (1134)
.+.+ .....|...++. + ...........++.+|+|+|.. ..+++++++ ||
T Consensus 191 ~a~p---------------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF 253 (383)
T PHA02244 191 ASIP---------------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF 253 (383)
T ss_pred cCCH---------------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc
Confidence 8731 223334444432 1 1111111123468999999973 467899999 99
Q ss_pred cccccCCCCCH
Q 001162 733 DFHVQLPAPAA 743 (1134)
Q Consensus 733 ~~~i~l~~P~~ 743 (1134)
. ++++..|+.
T Consensus 254 v-~I~~dyp~~ 263 (383)
T PHA02244 254 A-PIEFDYDEK 263 (383)
T ss_pred E-EeeCCCCcH
Confidence 6 799999884
No 341
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.74 E-value=1.3e-07 Score=114.62 Aligned_cols=125 Identities=24% Similarity=0.281 Sum_probs=83.5
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHH-----------cCCcEEEE
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAA-----------CSLRFISV 909 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~-----------~~~~~i~i 909 (1134)
..++++.|.....+.+.+.+.... ....++||+|++||||+++|+++... .+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A-----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA-----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 357788888887777777665321 22357999999999999999999887 35799999
Q ss_pred eCcccchh-----cccccH--------HHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc
Q 001162 910 KGPELLNK-----YIGASE--------QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE 976 (1134)
Q Consensus 910 ~~~el~~~-----~~G~se--------~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~ 976 (1134)
||+.+-.. ..|..+ ..-..+|+.|.++ .||||||+.| ...+...|+..|+.-.
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~L-----------p~~~Q~kLl~~L~e~~ 350 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG---TLFLDEIGEM-----------PLPLQTRLLRVLEEKE 350 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccCCC---EEEEcChHhC-----------CHHHHHHHHhhhhcCe
Confidence 99876321 122111 1112466666555 9999999998 3445666766664311
Q ss_pred --c-------cccEEEEEecCCC
Q 001162 977 --V-------LTGVFVFAATSRP 990 (1134)
Q Consensus 977 --~-------~~~v~vIatTn~p 990 (1134)
. .-++-||++|+..
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~ 373 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCD 373 (538)
T ss_pred EEecCCCceeccceEEEEecCCC
Confidence 1 1135788888764
No 342
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.73 E-value=5.2e-08 Score=113.96 Aligned_cols=204 Identities=14% Similarity=0.181 Sum_probs=124.8
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
..+|++|.|....+.++++.++..-..+ ..|||.|.+||||..+|++|.+... ....+|+.+||
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~A~td-------------stVLi~GESGTGKElfA~~IH~~S~---R~~~PFIaiNC 304 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRIAKTD-------------STVLILGESGTGKELFARAIHNLSP---RANGPFIAINC 304 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhhcCCC-------------CcEEEecCCCccHHHHHHHHHhcCc---ccCCCeEEEec
Confidence 4568899999999999888776654433 5699999999999999999998543 33478999999
Q ss_pred cccccc---------chhhHHHHHH----HHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 001162 630 SRLSLE---------KGPIIRQALS----NFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE 696 (1134)
Q Consensus 630 s~l~~~---------~~~~~~~~l~----~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~ 696 (1134)
..+... ..|.+....+ ..|+.| ..+-||||||..|- . .+...|++.+.+
T Consensus 305 aAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A---~gGTLFLDEIgemp-----------l----~LQaKLLRVLQE 366 (560)
T COG3829 305 AAIPETLLESELFGYEKGAFTGASKGGKPGLFELA---NGGTLFLDEIGEMP-----------L----PLQAKLLRVLQE 366 (560)
T ss_pred ccCCHHHHHHHHhCcCCccccccccCCCCcceeec---cCCeEEehhhccCC-----------H----HHHHHHHHHHhh
Confidence 766432 2222211111 123333 23479999997762 2 333344444432
Q ss_pred h--ccccccccCCCcEEEEEecCCC--CC-----CChhhccCCCccccccCCCCCH----HHHHHHHHHHhhh----c--
Q 001162 697 Y--GEKRKSSCGIGPIAFVASAQSL--EK-----IPQSLTSSGRFDFHVQLPAPAA----SERKAILEHEIQR----R-- 757 (1134)
Q Consensus 697 ~--~~~~~~~~~~~~V~vIattn~~--~~-----Ld~aL~~~gRF~~~i~l~~P~~----eeR~~IL~~~l~~----~-- 757 (1134)
- ..-.......-.|.+|++||.. +. +-..|.- |+. ++.+..|.. ++...+...++.+ .
T Consensus 367 kei~rvG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYY--RLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~ 443 (560)
T COG3829 367 KEIERVGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYY--RLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGR 443 (560)
T ss_pred ceEEecCCCCceeeEEEEEeccCcCHHHHHhcCcchhhhee--eec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCC
Confidence 1 1111112223369999999961 11 1122222 332 444444443 3444444555442 1
Q ss_pred ccC-CCHHHHHHHhhhcCCCChhhHHHHHHHHHH
Q 001162 758 SLE-CSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 758 ~l~-~~~~~l~~la~~teG~s~~DL~~Lv~~a~~ 790 (1134)
... ++++.+..+.++..--+-|+|++++++++.
T Consensus 444 ~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 444 NVKGLSPDALALLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred CcccCCHHHHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 222 788999888888766689999999999885
No 343
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.73 E-value=1.2e-07 Score=114.00 Aligned_cols=143 Identities=21% Similarity=0.288 Sum_probs=88.9
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcC----C-------------
Q 001162 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS----L------------- 904 (1134)
Q Consensus 842 ~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~----~------------- 904 (1134)
.|+++.|+..+++.+.-... ...+++|+||||||||++|++++..+. .
T Consensus 190 d~~dv~Gq~~~~~al~~aa~---------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIAAA---------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CHHHhcCcHHHHhhhhhhcc---------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 67788998888776654432 234799999999999999999997441 1
Q ss_pred -----------cEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcc
Q 001162 905 -----------RFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELD 973 (1134)
Q Consensus 905 -----------~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld 973 (1134)
+|.....+......+|.....-...+..|.. .+|||||++.+ ...+.+.|+..|+
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~-----------~~~~~~~L~~~LE 320 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEF-----------KRSVLDALREPIE 320 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhC-----------CHHHHHHHHHHHH
Confidence 1111111111111111110011123445544 39999999987 4456677777665
Q ss_pred ccc----c-------cccEEEEEecCCC------C-----------------ccchhhcCcCcccceeecCCCCHH
Q 001162 974 GVE----V-------LTGVFVFAATSRP------D-----------------LLDAALLRPGRLDRLLFCDFPSPR 1015 (1134)
Q Consensus 974 ~~~----~-------~~~v~vIatTn~p------~-----------------~ld~allrpgRfd~~i~~~~p~~~ 1015 (1134)
.-. . ..++.+|+++|.. + .+..+|+. |||-.+.++.++.+
T Consensus 321 ~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 321 DGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred cCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 321 1 1357888888852 1 37788888 99999999887654
No 344
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=1.9e-07 Score=106.36 Aligned_cols=129 Identities=19% Similarity=0.256 Sum_probs=96.0
Q ss_pred CCCCceEEEcCCCCchhHHHHHHHHHcCC------------------------cEEEEeCcccchhcccccHHHHHHHHH
Q 001162 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSL------------------------RFISVKGPELLNKYIGASEQAVRDIFS 931 (1134)
Q Consensus 876 ~~~~~vLL~GppGtGKT~lA~alA~~~~~------------------------~~i~i~~~el~~~~~G~se~~v~~lf~ 931 (1134)
+.+.++||+||+|+||+++|+++|+.+-. .|+.+.+.+ ++.+ .-+.+|++.+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~I--~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKDI--GVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCCC--CHHHHHHHHH
Confidence 34457999999999999999999987632 122232210 1111 2456776655
Q ss_pred Hh----hhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCccccee
Q 001162 932 KA----TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLL 1007 (1134)
Q Consensus 932 ~A----~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i 1007 (1134)
.+ ..+...|++||++|.| .....|.||+.|+ ++..++++|.+|+.++.+-|.+++ |+ ..+
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m-----------~~~AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpTI~S--RC-~~~ 161 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERL-----------TEAAANALLKTLE--EPRPNTYFLLQADLSAALLPTIYS--RC-QTW 161 (325)
T ss_pred HHhhccccCCceEEEEechhhh-----------CHHHHHHHHHHhc--CCCCCeEEEEEECChHhCchHHHh--hc-eEE
Confidence 54 3344579999999998 5678899999998 677888999999999999999998 55 466
Q ss_pred ecCCCCHHHHHHHHHHH
Q 001162 1008 FCDFPSPRERLDILKVI 1024 (1134)
Q Consensus 1008 ~~~~p~~~er~~Il~~~ 1024 (1134)
.|++|+.++..+.|...
T Consensus 162 ~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQ 178 (325)
T ss_pred eCCCCCHHHHHHHHHHH
Confidence 89999999888777654
No 345
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.73 E-value=1.1e-07 Score=115.33 Aligned_cols=125 Identities=22% Similarity=0.319 Sum_probs=82.7
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchh
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK 917 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~ 917 (1134)
..|+++.|.....+.+.+.+.... ....++||+|++||||+++|+++.... +.+|+.++|..+-..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A-----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYA-----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 457788888887777776665321 223579999999999999999998765 579999999866321
Q ss_pred -----cccc--------cHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc--c-----
Q 001162 918 -----YIGA--------SEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V----- 977 (1134)
Q Consensus 918 -----~~G~--------se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~--~----- 977 (1134)
..|. ....-..+|+.|.++ .||||||+.|. ..+...|+..|+.-. .
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~Lp-----------~~~Q~~Ll~~L~~~~~~r~g~~~ 343 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHRG---TLFLDEIGEMP-----------LPLQTRLLRVLEEREVVRVGGTE 343 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCCc---eEEecChHhCC-----------HHHHHHHHHHHhcCcEEecCCCc
Confidence 1121 111123466666554 99999999983 345566666654211 0
Q ss_pred --cccEEEEEecCCC
Q 001162 978 --LTGVFVFAATSRP 990 (1134)
Q Consensus 978 --~~~v~vIatTn~p 990 (1134)
.-.+-||++|+..
T Consensus 344 ~~~~dvRiIaat~~~ 358 (526)
T TIGR02329 344 PVPVDVRVVAATHCA 358 (526)
T ss_pred eeeecceEEeccCCC
Confidence 1135688888764
No 346
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.72 E-value=1.9e-07 Score=113.19 Aligned_cols=207 Identities=15% Similarity=0.147 Sum_probs=120.6
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhcc-----CCceeeEEEE
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEH-----HKDLVAHIVF 626 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~-----~~~~~~~~~~ 626 (1134)
.|.++.|....+.++.+.+..+... ..+|||+|++||||+++|++|...+.. ......+++.
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~A~s-------------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLYARS-------------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHHhCC-------------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 4677999999999999988665432 256999999999999999999986210 1122368999
Q ss_pred EecccccccchhhH-----HHH--------HHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001162 627 VCCSRLSLEKGPII-----RQA--------LSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1134)
Q Consensus 627 v~~s~l~~~~~~~~-----~~~--------l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1134)
+||..+.....+.. +.. -..+|+.| ..+.|||||++.|- . .+...|.+.
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp-----------~----~~Q~kLl~~ 345 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEMP-----------L----PLQTRLLRV 345 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhCC-----------H----HHHHHHHhh
Confidence 99998754221110 000 00122222 34689999999983 2 333344444
Q ss_pred HHHhc--cccccccCCCcEEEEEecCCC-CC------CChhhccCCCcc-ccccCCCCCH--HHHHHHHHHHhhh----c
Q 001162 694 MDEYG--EKRKSSCGIGPIAFVASAQSL-EK------IPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR----R 757 (1134)
Q Consensus 694 ld~~~--~~~~~~~~~~~V~vIattn~~-~~------Ld~aL~~~gRF~-~~i~l~~P~~--eeR~~IL~~~l~~----~ 757 (1134)
++.-. ..........++.+|++|+.. +. +.+.|.. |+. ..+++|+... ++...+++.++.. .
T Consensus 346 L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~ 423 (538)
T PRK15424 346 LEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLSILRLQLPPLRERVADILPLAESFLKQSLAAL 423 (538)
T ss_pred hhcCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--HhcCCeecCCChhhchhHHHHHHHHHHHHHHHHc
Confidence 43311 100001112257888888752 11 1122222 222 2345555543 4555566666654 3
Q ss_pred ccCCCHHHH-------HHHhhhcCCCChhhHHHHHHHHHHH
Q 001162 758 SLECSDEIL-------LDVASKCDGYDAYDLEILVDRTVHA 791 (1134)
Q Consensus 758 ~l~~~~~~l-------~~la~~teG~s~~DL~~Lv~~a~~~ 791 (1134)
+..++++.+ ..+..+..-.+.++|++++++++..
T Consensus 424 ~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 424 SAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred CCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 444666554 4555555555789999999998864
No 347
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=2.5e-07 Score=105.50 Aligned_cols=188 Identities=13% Similarity=0.141 Sum_probs=115.5
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCce------------
Q 001162 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL------------ 620 (1134)
Q Consensus 553 ~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~------------ 620 (1134)
|.++.|.+..++.+.+.+.. ...+..+||+||+|+||+++|+++|+.+-.....
T Consensus 3 f~~iiGq~~~~~~L~~~i~~--------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQ--------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHh--------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 66788898888877776533 1224569999999999999999999997533210
Q ss_pred eeEEEEEecccc-cccc---------------hhhH-HHHHHHHHHHHh----hcCCeEEEEcccchhccCCCCCCCCCC
Q 001162 621 VAHIVFVCCSRL-SLEK---------------GPII-RQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQP 679 (1134)
Q Consensus 621 ~~~~~~v~~s~l-~~~~---------------~~~~-~~~l~~~f~~a~----~~~PsIL~IDEiD~L~~~~~~~~~~~~ 679 (1134)
.-.+.++.+... .+.. ...+ -..++++.+.+. .....|++||++|.+..
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~---------- 138 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE---------- 138 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH----------
Confidence 011222222110 0100 0000 112344433332 23456999999999841
Q ss_pred chhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhccc
Q 001162 680 STSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSL 759 (1134)
Q Consensus 680 ~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l 759 (1134)
.-.+.|+..+++.. . .++|..|+.++.+.+.+++ |.. .+.|++++.++..++|........
T Consensus 139 -----~aaNaLLK~LEEPp-~---------~~fILi~~~~~~Ll~TI~S--Rcq-~i~f~~l~~~~~~~~L~~~~~~~~- 199 (314)
T PRK07399 139 -----AAANALLKTLEEPG-N---------GTLILIAPSPESLLPTIVS--RCQ-IIPFYRLSDEQLEQVLKRLGDEEI- 199 (314)
T ss_pred -----HHHHHHHHHHhCCC-C---------CeEEEEECChHhCcHHHHh--hce-EEecCCCCHHHHHHHHHHhhcccc-
Confidence 34556677777643 1 3566677788999999999 764 899999999999999987543211
Q ss_pred CCCHHHHHHHhhhcCCCChhhHHHHHH
Q 001162 760 ECSDEILLDVASKCDGYDAYDLEILVD 786 (1134)
Q Consensus 760 ~~~~~~l~~la~~teG~s~~DL~~Lv~ 786 (1134)
.+.....++....| +++....+++
T Consensus 200 --~~~~~~~l~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 200 --LNINFPELLALAQG-SPGAAIANIE 223 (314)
T ss_pred --chhHHHHHHHHcCC-CHHHHHHHHH
Confidence 11224566666666 5555444443
No 348
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.72 E-value=4.9e-07 Score=100.26 Aligned_cols=217 Identities=17% Similarity=0.205 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCC---ceeeEEEEEecccccc----
Q 001162 562 TASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCCSRLSL---- 634 (1134)
Q Consensus 562 ~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~---~~~~~~~~v~~s~l~~---- 634 (1134)
...++++.+..++... ....+.++||+|++|.|||++++..++.-.... ....+++++.+-.-.+
T Consensus 41 ~A~~~L~~L~~Ll~~P--------~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 41 RAKEALDRLEELLEYP--------KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred HHHHHHHHHHHHHhCC--------cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHH
Confidence 3455666665544311 122234599999999999999999998643221 1224677776521110
Q ss_pred ------------cchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccc
Q 001162 635 ------------EKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRK 702 (1134)
Q Consensus 635 ------------~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~ 702 (1134)
.......+.-..+.......++.+|+|||+|.++.. ....+..+.+.|..+...+.-
T Consensus 113 Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG--------s~~~qr~~Ln~LK~L~NeL~i--- 181 (302)
T PF05621_consen 113 YSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG--------SYRKQREFLNALKFLGNELQI--- 181 (302)
T ss_pred HHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc--------cHHHHHHHHHHHHHHhhccCC---
Confidence 001112222233334445567789999999998731 223344555555554333321
Q ss_pred cccCCCcEEEEEecCCCCC--CChhhccCCCccccccCCCCCH-HHHHHHHHHHhhhcccC-----CCHHHHHHHhhhcC
Q 001162 703 SSCGIGPIAFVASAQSLEK--IPQSLTSSGRFDFHVQLPAPAA-SERKAILEHEIQRRSLE-----CSDEILLDVASKCD 774 (1134)
Q Consensus 703 ~~~~~~~V~vIattn~~~~--Ld~aL~~~gRF~~~i~l~~P~~-eeR~~IL~~~l~~~~l~-----~~~~~l~~la~~te 774 (1134)
+++.+||..-... -|+-+.+ ||. .+.+|.... ++...++..+.....+. .+.+....+-..++
T Consensus 182 ------piV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~ 252 (302)
T PF05621_consen 182 ------PIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSE 252 (302)
T ss_pred ------CeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcC
Confidence 3555555433222 3567777 997 777877664 45566666654432222 24455678899999
Q ss_pred CCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHh
Q 001162 775 GYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQ 818 (1134)
Q Consensus 775 G~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~ 818 (1134)
|..| ++..++..|+..|+.. +...|+.+.+..
T Consensus 253 G~iG-~l~~ll~~aA~~AI~s-----------G~E~It~~~l~~ 284 (302)
T PF05621_consen 253 GLIG-ELSRLLNAAAIAAIRS-----------GEERITREILDK 284 (302)
T ss_pred CchH-HHHHHHHHHHHHHHhc-----------CCceecHHHHhh
Confidence 9766 7888888888777654 335577776654
No 349
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.71 E-value=1.2e-07 Score=118.15 Aligned_cols=145 Identities=20% Similarity=0.251 Sum_probs=83.4
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhcc-----------CC------------------ceeeEEEEEecccccccchhh--
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEH-----------HK------------------DLVAHIVFVCCSRLSLEKGPI-- 639 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~-----------~~------------------~~~~~~~~v~~s~l~~~~~~~-- 639 (1134)
++|||.|++|||||++||++++.+.. .. ....+++.+.++.....-.|.
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d 105 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD 105 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence 67999999999999999999998720 00 001234444443221111111
Q ss_pred HHHHHHH---HHHH--HhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHh----ccccccccCCCcE
Q 001162 640 IRQALSN---FISE--ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY----GEKRKSSCGIGPI 710 (1134)
Q Consensus 640 ~~~~l~~---~f~~--a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~----~~~~~~~~~~~~V 710 (1134)
+.+.+.. .+.. ......++|||||++.+-. .+...|...++.- ...........++
T Consensus 106 ~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~---------------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~ 170 (633)
T TIGR02442 106 IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD---------------HLVDVLLDAAAMGVNRVEREGLSVSHPARF 170 (633)
T ss_pred HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH---------------HHHHHHHHHHhcCCEEEEECCceeeecCCe
Confidence 1111100 0000 0011235999999999841 4455555655532 1111111112358
Q ss_pred EEEEecCCCC-CCChhhccCCCccccccCCCCC-HHHHHHHHHH
Q 001162 711 AFVASAQSLE-KIPQSLTSSGRFDFHVQLPAPA-ASERKAILEH 752 (1134)
Q Consensus 711 ~vIattn~~~-~Ld~aL~~~gRF~~~i~l~~P~-~eeR~~IL~~ 752 (1134)
.+|+|+|..+ .+.+.|.. ||..++.++.+. .+++.+|++.
T Consensus 171 ~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 171 VLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred EEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 9999998643 57888998 999888888775 5777888765
No 350
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.71 E-value=8.3e-08 Score=116.35 Aligned_cols=206 Identities=15% Similarity=0.157 Sum_probs=124.2
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s 630 (1134)
..|.++.|....+.++.+.+..+... ..+|||+|++||||+++|++|...... ...+++.++|.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~-------------~~pVLI~GE~GTGKe~lA~~IH~~S~r---~~~pfv~inC~ 272 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARS-------------DATVLILGESGTGKELVAQAIHQLSGR---RDFPFVAINCG 272 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC-------------CCcEEEECCCCcCHHHHHHHHHHhcCc---CCCCEEEeccc
Confidence 44678899999999999988665432 256999999999999999999986432 22689999999
Q ss_pred cccccchhh-HHH------------HHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q 001162 631 RLSLEKGPI-IRQ------------ALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1134)
Q Consensus 631 ~l~~~~~~~-~~~------------~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~ 697 (1134)
.+....... +-. .-..+|+.+ ..+.|||||++.|- . .+...|.+.++.-
T Consensus 273 ~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp-----------~----~~Q~~Ll~~L~~~ 334 (526)
T TIGR02329 273 AIAESLLEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEMP-----------L----PLQTRLLRVLEER 334 (526)
T ss_pred cCChhHHHHHhcCCcccccccccccccccchhhc---CCceEEecChHhCC-----------H----HHHHHHHHHHhcC
Confidence 875322110 000 001122222 34689999999983 2 3333444444321
Q ss_pred c--cccccccCCCcEEEEEecCCC-C------CCChhhccCCCcc-ccccCCCCCH--HHHHHHHHHHhhh----cccCC
Q 001162 698 G--EKRKSSCGIGPIAFVASAQSL-E------KIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR----RSLEC 761 (1134)
Q Consensus 698 ~--~~~~~~~~~~~V~vIattn~~-~------~Ld~aL~~~gRF~-~~i~l~~P~~--eeR~~IL~~~l~~----~~l~~ 761 (1134)
. ..........++.+|++|+.. . .+.+.|.. |+. ..+++|+... ++...++..++.. .++.+
T Consensus 335 ~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 412 (526)
T TIGR02329 335 EVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPD 412 (526)
T ss_pred cEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 1 100001111246888888752 1 12222222 332 3456665543 4555566666553 23457
Q ss_pred CHHHHHH-------HhhhcCCCChhhHHHHHHHHHHHH
Q 001162 762 SDEILLD-------VASKCDGYDAYDLEILVDRTVHAA 792 (1134)
Q Consensus 762 ~~~~l~~-------la~~teG~s~~DL~~Lv~~a~~~a 792 (1134)
+++.+.. +..+..-.+.++|++++++++..+
T Consensus 413 ~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 413 SEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred CHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 7777766 776666668899999999987644
No 351
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.71 E-value=2.4e-07 Score=99.35 Aligned_cols=158 Identities=19% Similarity=0.305 Sum_probs=114.2
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCc----ee-------------------eEEEEEecccccccchhhHHHHHHHH
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKD----LV-------------------AHIVFVCCSRLSLEKGPIIRQALSNF 647 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~----~~-------------------~~~~~v~~s~l~~~~~~~~~~~l~~~ 647 (1134)
.|+|+|||+|+||-|.+.++.+++.--+- +. -+.+.++.++..... +-.++++
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~D----RvViQel 110 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYD----RVVIQEL 110 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCccc----HHHHHHH
Confidence 46999999999999999999998742100 00 112223333322222 2234444
Q ss_pred HHHHhhcC---------CeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCC
Q 001162 648 ISEALDHA---------PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS 718 (1134)
Q Consensus 648 f~~a~~~~---------PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~ 718 (1134)
+.+....+ -.+++|-|+|.|.. .....|.+.|+.|.. ++.+|..+|+
T Consensus 111 lKevAQt~qie~~~qr~fKvvvi~ead~LT~---------------dAQ~aLRRTMEkYs~---------~~RlIl~cns 166 (351)
T KOG2035|consen 111 LKEVAQTQQIETQGQRPFKVVVINEADELTR---------------DAQHALRRTMEKYSS---------NCRLILVCNS 166 (351)
T ss_pred HHHHHhhcchhhccccceEEEEEechHhhhH---------------HHHHHHHHHHHHHhc---------CceEEEEecC
Confidence 44443322 24999999999962 334567788888875 4789999999
Q ss_pred CCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChh
Q 001162 719 LEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAY 779 (1134)
Q Consensus 719 ~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~ 779 (1134)
...+-+++++ |.- .+.+|.|+.++...++...+.+.++.++.+.+..+|..++|-..+
T Consensus 167 ~SriIepIrS--RCl-~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRr 224 (351)
T KOG2035|consen 167 TSRIIEPIRS--RCL-FIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRR 224 (351)
T ss_pred cccchhHHhh--hee-EEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHH
Confidence 9999999999 543 689999999999999999999999999999999999998884333
No 352
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=1.7e-07 Score=107.80 Aligned_cols=151 Identities=21% Similarity=0.277 Sum_probs=105.1
Q ss_pred CCCCceEEEcCCCCchhHHHHHHHHHcCC------------------------cEEEEeCcccchhcccccHHHHHHHHH
Q 001162 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSL------------------------RFISVKGPELLNKYIGASEQAVRDIFS 931 (1134)
Q Consensus 876 ~~~~~vLL~GppGtGKT~lA~alA~~~~~------------------------~~i~i~~~el~~~~~G~se~~v~~lf~ 931 (1134)
+.+..+||+||+|+||+++|.++|+.+-. .+..+.+..- .. .-+-+.+|++.+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~--~I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KS--SLGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-cc--cCCHHHHHHHHH
Confidence 44567999999999999999999987621 1222222100 00 012345666665
Q ss_pred Hh----hhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCccccee
Q 001162 932 KA----TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLL 1007 (1134)
Q Consensus 932 ~A----~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i 1007 (1134)
.+ ..+...|++||++|+| .....|.||+.|+ ++..++++|.+|+.|+.+-|.+++ |+. .+
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrS--RCq-~~ 162 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALL-----------TDAAANALLKTLE--EPPENTWFFLACREPARLLATLRS--RCR-LH 162 (334)
T ss_pred HHhhccccCCceEEEEcchHhh-----------CHHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--ccc-cc
Confidence 44 3345579999999998 5678999999998 677889999999999999999999 665 57
Q ss_pred ecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHH
Q 001162 1008 FCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGA 1049 (1134)
Q Consensus 1008 ~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~ 1049 (1134)
.|++|+.++....+... .+++ ..+...+++.+.|-.+.
T Consensus 163 ~~~~~~~~~~~~~L~~~---~~~~-~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 163 YLAPPPEQYALTWLSRE---VTMS-QDALLAALRLSAGAPGA 200 (334)
T ss_pred cCCCCCHHHHHHHHHHc---cCCC-HHHHHHHHHHcCCCHHH
Confidence 99999998887776532 2322 22244556666665443
No 353
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.70 E-value=2.3e-07 Score=114.24 Aligned_cols=193 Identities=21% Similarity=0.183 Sum_probs=109.4
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchh
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK 917 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~ 917 (1134)
..++.+.|....-+.+.+.+.... ....++||+|++||||+++|+++.... +.+|+.++|..+-..
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 456778887777777666665332 234579999999999999999999876 579999999876321
Q ss_pred c-----ccccHH-------HHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc--c------
Q 001162 918 Y-----IGASEQ-------AVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V------ 977 (1134)
Q Consensus 918 ~-----~G~se~-------~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~--~------ 977 (1134)
. .|.... .-...|+.|.+ .+|||||++.|. ..+...|+..++.-. .
T Consensus 262 ~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~---GtL~ldei~~L~-----------~~~Q~~Ll~~l~~~~~~~~~~~~~ 327 (534)
T TIGR01817 262 LLESELFGHEKGAFTGAIAQRKGRFELADG---GTLFLDEIGEIS-----------PAFQAKLLRVLQEGEFERVGGNRT 327 (534)
T ss_pred HHHHHHcCCCCCccCCCCcCCCCcccccCC---CeEEEechhhCC-----------HHHHHHHHHHHhcCcEEECCCCce
Confidence 1 111100 00112344433 499999999983 345566666664311 1
Q ss_pred -cccEEEEEecCCCC-c------cchhhcCcCccc-ceeecCCCC--HHHHHHHHHHHHcc----CCCCCcccHHHH---
Q 001162 978 -LTGVFVFAATSRPD-L------LDAALLRPGRLD-RLLFCDFPS--PRERLDILKVISRK----LPLADDVDLEAI--- 1039 (1134)
Q Consensus 978 -~~~v~vIatTn~p~-~------ld~allrpgRfd-~~i~~~~p~--~~er~~Il~~~~~~----~~~~~~vd~~~L--- 1039 (1134)
...+-+|+||+..- . +.+.|.. |+. ..|.+|+.. .++...|++.++++ .+....++.+.+
T Consensus 328 ~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L 405 (534)
T TIGR01817 328 LKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVL 405 (534)
T ss_pred EeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 11367888877532 1 2223332 332 244555443 34455555555543 222223443333
Q ss_pred HHhccCCcHHHHHHHHHHHHH
Q 001162 1040 AHMTEGFSGADLQALLSDAQL 1060 (1134)
Q Consensus 1040 a~~t~g~sg~dl~~l~~~A~~ 1060 (1134)
..+.---+-++|++++..|+.
T Consensus 406 ~~~~WPGNvrEL~~v~~~a~~ 426 (534)
T TIGR01817 406 MSCKWPGNVRELENCLERTAT 426 (534)
T ss_pred HhCCCCChHHHHHHHHHHHHH
Confidence 333222234677777666554
No 354
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.70 E-value=4.2e-08 Score=113.32 Aligned_cols=140 Identities=23% Similarity=0.329 Sum_probs=87.8
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccc------ccchhhHHHHHHHHHHHHhh--cCC--eEE
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS------LEKGPIIRQALSNFISEALD--HAP--SIV 659 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~------~~~~~~~~~~l~~~f~~a~~--~~P--sIL 659 (1134)
.+++||-||||||||++++.+|+.++ ..+..+.|..-. |.+.-.....-...|....+ ... +++
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~------~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~il 116 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALG------LPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVIL 116 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhC------CCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEE
Confidence 37899999999999999999999998 677778876432 22211110000000000000 011 399
Q ss_pred EEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccc---ccCCCcEEEEEecC-----CCCCCChhhccCCC
Q 001162 660 IFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKS---SCGIGPIAFVASAQ-----SLEKIPQSLTSSGR 731 (1134)
Q Consensus 660 ~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~---~~~~~~V~vIattn-----~~~~Ld~aL~~~gR 731 (1134)
++|||+...+ .+...|+..|++..-.... .....++++|+|.| ....+++++++ |
T Consensus 117 l~DEInra~p---------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--R 179 (329)
T COG0714 117 LLDEINRAPP---------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--R 179 (329)
T ss_pred EEeccccCCH---------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--h
Confidence 9999987631 5566677777663321111 22345789999999 45568999999 9
Q ss_pred ccccccCCCCC-HHHHHHHHHH
Q 001162 732 FDFHVQLPAPA-ASERKAILEH 752 (1134)
Q Consensus 732 F~~~i~l~~P~-~eeR~~IL~~ 752 (1134)
|...+.++.|+ .++...++..
T Consensus 180 f~~~~~v~yp~~~~e~~~i~~~ 201 (329)
T COG0714 180 FLLRIYVDYPDSEEEERIILAR 201 (329)
T ss_pred EEEEEecCCCCchHHHHHHHHh
Confidence 98789999994 4444444443
No 355
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.69 E-value=4.8e-07 Score=108.01 Aligned_cols=233 Identities=20% Similarity=0.228 Sum_probs=140.8
Q ss_pred ccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhcc----CCceeeEEEEEecc
Q 001162 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEH----HKDLVAHIVFVCCS 630 (1134)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~----~~~~~~~~~~v~~s 630 (1134)
+|-+.+..+.+|-.++...+... .....+.+.|-||||||.+++.+.+.|.. +......++.||+-
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~----------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm 466 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQ----------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGL 466 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCC----------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcce
Confidence 45568888889888887766531 11235999999999999999999998762 22223556666665
Q ss_pred cccccc--------------hh--hHHHHHHHHHHHH-hhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001162 631 RLSLEK--------------GP--IIRQALSNFISEA-LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1134)
Q Consensus 631 ~l~~~~--------------~~--~~~~~l~~~f~~a-~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1134)
.+.+.. .. ..-..+...|... ....++||+|||+|.|+.. -...|.++
T Consensus 467 ~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr---------------~QdVlYn~ 531 (767)
T KOG1514|consen 467 RLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTR---------------SQDVLYNI 531 (767)
T ss_pred eecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcc---------------cHHHHHHH
Confidence 443311 00 0011233333311 2245789999999999831 12345555
Q ss_pred HHHhccccccccCCCcEEEEEecCCCCCCChhhcc---CCCcc-ccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHH
Q 001162 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTS---SGRFD-FHVQLPAPAASERKAILEHEIQRRSLECSDEILLDV 769 (1134)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~---~gRF~-~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~l 769 (1134)
++.....+. .++||+.+|..+. +..++. +.|++ .++.|.+++.+|..+|+...+... ..+..++++.+
T Consensus 532 fdWpt~~~s------KLvvi~IaNTmdl-PEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielv 603 (767)
T KOG1514|consen 532 FDWPTLKNS------KLVVIAIANTMDL-PERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELV 603 (767)
T ss_pred hcCCcCCCC------ceEEEEecccccC-HHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHH
Confidence 554332221 4788888886543 322221 11444 478999999999999999888764 23455555555
Q ss_pred hhhcCCC--ChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhccc
Q 001162 770 ASKCDGY--DAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (1134)
Q Consensus 770 a~~teG~--s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~ 824 (1134)
|..-... +.+-...+|++|...+-.+.. .+ .......+...++.+|+.++.
T Consensus 604 arkVAavSGDaRraldic~RA~Eia~~~~~-~~---k~~~~q~v~~~~v~~Ai~em~ 656 (767)
T KOG1514|consen 604 ARKVAAVSGDARRALDICRRAAEIAEERNV-KG---KLAVSQLVGILHVMEAINEML 656 (767)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhhhcc-cc---cccccceeehHHHHHHHHHHh
Confidence 5443333 345566788898887766643 11 111224567777777776654
No 356
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.66 E-value=1e-07 Score=104.29 Aligned_cols=181 Identities=18% Similarity=0.198 Sum_probs=118.1
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
...+.++++.++.+..+.+... ...-.|.|+|||||||||+...+.|+.+.........+..++.
T Consensus 37 P~~l~dv~~~~ei~st~~~~~~---------------~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelna 101 (360)
T KOG0990|consen 37 PPFLGIVIKQEPIWSTENRYSG---------------MPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNA 101 (360)
T ss_pred CchhhhHhcCCchhhHHHHhcc---------------CCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhc
Confidence 3445666667766666655411 1111279999999999999999999998742221112333444
Q ss_pred ccccccchhhHHHHHHHHHHHHhh-------cCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALD-------HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRK 702 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~-------~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~ 702 (1134)
++-.+-. ..+..+ ..|..+.. ..+..+++||+|.+.. ...+.|.+..+.+..
T Consensus 102 Sd~rgid--~vr~qi-~~fast~~~~~fst~~~fKlvILDEADaMT~---------------~AQnALRRviek~t~--- 160 (360)
T KOG0990|consen 102 SDDRGID--PVRQQI-HLFASTQQPTTYSTHAAFKLVILDEADAMTR---------------DAQNALRRVIEKYTA--- 160 (360)
T ss_pred cCccCCc--chHHHH-HHHHhhccceeccccCceeEEEecchhHhhH---------------HHHHHHHHHHHHhcc---
Confidence 4433322 222222 22333321 2567999999999862 234445555555543
Q ss_pred cccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCC
Q 001162 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG 775 (1134)
Q Consensus 703 ~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG 775 (1134)
++.++..+|++..+.|++++ ||. .+.|.+.+..+...++.+.++......+++....++...-|
T Consensus 161 ------n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~g 224 (360)
T KOG0990|consen 161 ------NTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVG 224 (360)
T ss_pred ------ceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHH
Confidence 36777888999999999999 876 78899999999999999888877777777766665554443
No 357
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.66 E-value=1.6e-07 Score=115.85 Aligned_cols=142 Identities=23% Similarity=0.255 Sum_probs=86.6
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHh---------hcCCeEEE
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL---------DHAPSIVI 660 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~---------~~~PsIL~ 660 (1134)
-+||||.|+||||||++++++++.+... .+++.+.+......-.+.+ .+...+.... ....++||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~----~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~ 89 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPI----MPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLY 89 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcC----CCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEe
Confidence 3689999999999999999999986521 2355555422111111111 0111111110 12236999
Q ss_pred EcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc---cc-cccccCCCcEEEEEecCCCC---CCChhhccCCCcc
Q 001162 661 FDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG---EK-RKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFD 733 (1134)
Q Consensus 661 IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~---~~-~~~~~~~~~V~vIattn~~~---~Ld~aL~~~gRF~ 733 (1134)
|||++.+-+ .+...|.+.|+.-. .+ ........++.+|+|+|..+ .+++.|.. ||.
T Consensus 90 lDEi~rl~~---------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~ 152 (589)
T TIGR02031 90 VDMANLLDD---------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLA 152 (589)
T ss_pred ccchhhCCH---------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hcc
Confidence 999998842 44555666665321 10 11111123689999999865 68889998 999
Q ss_pred ccccCC-CCCHHHHHHHHHHHh
Q 001162 734 FHVQLP-APAASERKAILEHEI 754 (1134)
Q Consensus 734 ~~i~l~-~P~~eeR~~IL~~~l 754 (1134)
.++.+. .|+.++|.+|++..+
T Consensus 153 l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 153 LHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred CeeecCCCCCHHHHHHHHHHHH
Confidence 877665 456788899887754
No 358
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.66 E-value=1.2e-07 Score=115.67 Aligned_cols=143 Identities=16% Similarity=0.208 Sum_probs=84.3
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEE---Eecccccccchhh-HHHHHHHHHH--HHhhcCCeEEEEc
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVF---VCCSRLSLEKGPI-IRQALSNFIS--EALDHAPSIVIFD 662 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~---v~~s~l~~~~~~~-~~~~l~~~f~--~a~~~~PsIL~ID 662 (1134)
...|+||+|+||||||++||++++..... .+.. .+|..+....... ..... .++ .......++++||
T Consensus 235 ~~~~vLL~G~pGtGKs~lar~l~~~~~r~-----~~~~~~~~~~~~l~~~~~~~~~~g~~--~~~~G~l~~A~~Gil~iD 307 (509)
T smart00350 235 GDINILLLGDPGTAKSQLLKYVEKTAPRA-----VYTTGKGSSAVGLTAAVTRDPETREF--TLEGGALVLADNGVCCID 307 (509)
T ss_pred ccceEEEeCCCChhHHHHHHHHHHHcCcc-----eEcCCCCCCcCCccccceEccCcceE--EecCccEEecCCCEEEEe
Confidence 34489999999999999999999976421 1111 1333332111000 00000 000 0011235699999
Q ss_pred ccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc---c-ccccccCCCcEEEEEecCCCC-------------CCChh
Q 001162 663 NLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG---E-KRKSSCGIGPIAFVASAQSLE-------------KIPQS 725 (1134)
Q Consensus 663 EiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~---~-~~~~~~~~~~V~vIattn~~~-------------~Ld~a 725 (1134)
|+|.+-. .....|.+.|+.-. . .........++.+|||+|+.+ .++++
T Consensus 308 Ei~~l~~---------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~ 372 (509)
T smart00350 308 EFDKMDD---------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAP 372 (509)
T ss_pred chhhCCH---------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChH
Confidence 9999841 33444555554321 1 111111223689999999853 48899
Q ss_pred hccCCCccccc-cCCCCCHHHHHHHHHHHhh
Q 001162 726 LTSSGRFDFHV-QLPAPAASERKAILEHEIQ 755 (1134)
Q Consensus 726 L~~~gRF~~~i-~l~~P~~eeR~~IL~~~l~ 755 (1134)
+++ ||+..+ .+..|+.+...+|+++.+.
T Consensus 373 lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 373 ILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred HhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 999 998765 4578999999999887653
No 359
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.65 E-value=5.9e-09 Score=101.03 Aligned_cols=109 Identities=27% Similarity=0.384 Sum_probs=59.4
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCc-ccch-hcccccHHHH-HHHHHHhhhcCC---eEEEEcCcccccCCC
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGP-ELLN-KYIGASEQAV-RDIFSKATAAAP---CLLFFDEFDSIAPKR 953 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~-el~~-~~~G~se~~v-~~lf~~A~~~~P---~VLfiDEid~l~~~r 953 (1134)
|+||.|+||+|||++|+++|+.++..|..|.+. ++.- ...|..--.- ...|+.. ..| .|+++|||.+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~--~GPif~~ill~DEiNra---- 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFR--PGPIFTNILLADEINRA---- 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEE--E-TT-SSEEEEETGGGS----
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEee--cChhhhceeeecccccC----
Confidence 689999999999999999999999999988774 4431 1111100000 0001000 011 39999999887
Q ss_pred CCCCCcchhhHHHhHhhhcccc---------cccccEEEEEecCCCCc-----cchhhcCcCcc
Q 001162 954 GHDNTGVTDRVVNQFLTELDGV---------EVLTGVFVFAATSRPDL-----LDAALLRPGRL 1003 (1134)
Q Consensus 954 ~~~~~~~~~rv~~~lL~~ld~~---------~~~~~v~vIatTn~p~~-----ld~allrpgRf 1003 (1134)
..++.+.+|..|... .-.+.++||||-|..+. ++.+++. ||
T Consensus 75 -------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 75 -------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp --------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred -------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 456778888887531 12345899999997664 7778877 66
No 360
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=3.9e-07 Score=103.64 Aligned_cols=156 Identities=24% Similarity=0.314 Sum_probs=104.3
Q ss_pred CCCCceEEEcCCCCchhHHHHHHHHHcCC---------------------cEEEEe-Ccccch-hc-ccccHHHHHHHHH
Q 001162 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSL---------------------RFISVK-GPELLN-KY-IGASEQAVRDIFS 931 (1134)
Q Consensus 876 ~~~~~vLL~GppGtGKT~lA~alA~~~~~---------------------~~i~i~-~~el~~-~~-~G~se~~v~~lf~ 931 (1134)
+.+..+||+||+|+||+++|.++|+.+-. .+..+. .++-.+ +. ..-.-+.+|++.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 34457999999999999999999986622 122221 010000 00 0012456777766
Q ss_pred Hhh----hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCccccee
Q 001162 932 KAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLL 1007 (1134)
Q Consensus 932 ~A~----~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i 1007 (1134)
.+. .+...|++||++|.| .....|.||+.|+ ++..+++||.+|+.++.+-|.+++ |+. .+
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLE--EPp~~~~fiL~~~~~~~lLpTIrS--RCq-~i 167 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAI-----------NRAACNALLKTLE--EPSPGRYLWLISAQPARLPATIRS--RCQ-RL 167 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhh-----------CHHHHHHHHHHhh--CCCCCCeEEEEECChhhCchHHHh--hhe-Ee
Confidence 553 234469999999998 5678899999998 666778888889999999999999 654 66
Q ss_pred ecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHH
Q 001162 1008 FCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQ 1052 (1134)
Q Consensus 1008 ~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~ 1052 (1134)
.|++|+.++....+... +++ ..+...++..+.|-.+.-+.
T Consensus 168 ~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 168 EFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred eCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHHHHH
Confidence 89999998887777532 332 22234566677766554443
No 361
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.63 E-value=3.8e-07 Score=94.60 Aligned_cols=126 Identities=19% Similarity=0.228 Sum_probs=75.8
Q ss_pred cccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccccc
Q 001162 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635 (1134)
Q Consensus 556 l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~ 635 (1134)
|+|.+..+.++++.++.+... +.+|||+|++||||+.+|++|..... ....+++.++|+.+...
T Consensus 1 liG~s~~m~~~~~~~~~~a~~-------------~~pVlI~GE~GtGK~~lA~~IH~~s~---r~~~pfi~vnc~~~~~~ 64 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS-------------DLPVLITGETGTGKELLARAIHNNSP---RKNGPFISVNCAALPEE 64 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS-------------TS-EEEECSTTSSHHHHHHHHHHCST---TTTS-EEEEETTTS-HH
T ss_pred CEeCCHHHHHHHHHHHHHhCC-------------CCCEEEEcCCCCcHHHHHHHHHHhhh---cccCCeEEEehhhhhcc
Confidence 457788899999988776542 36799999999999999999998432 22378999999987432
Q ss_pred chhhHHHHH---------------HHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--
Q 001162 636 KGPIIRQAL---------------SNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-- 698 (1134)
Q Consensus 636 ~~~~~~~~l---------------~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~-- 698 (1134)
.. ...+ ..+|+.| ..+.|||||++.|. . .+...|.+.++.-.
T Consensus 65 ~~---e~~LFG~~~~~~~~~~~~~~G~l~~A---~~GtL~Ld~I~~L~-----------~----~~Q~~Ll~~l~~~~~~ 123 (168)
T PF00158_consen 65 LL---ESELFGHEKGAFTGARSDKKGLLEQA---NGGTLFLDEIEDLP-----------P----ELQAKLLRVLEEGKFT 123 (168)
T ss_dssp HH---HHHHHEBCSSSSTTTSSEBEHHHHHT---TTSEEEEETGGGS------------H----HHHHHHHHHHHHSEEE
T ss_pred hh---hhhhhccccccccccccccCCceeec---cceEEeecchhhhH-----------H----HHHHHHHHHHhhchhc
Confidence 21 1100 1233333 34699999999984 2 33444445554321
Q ss_pred cccccccCCCcEEEEEecCC
Q 001162 699 EKRKSSCGIGPIAFVASAQS 718 (1134)
Q Consensus 699 ~~~~~~~~~~~V~vIattn~ 718 (1134)
.........-++.+|++|+.
T Consensus 124 ~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 124 RLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp CCTSSSEEE--EEEEEEESS
T ss_pred cccccccccccceEEeecCc
Confidence 11111111226899999884
No 362
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=5.5e-07 Score=98.94 Aligned_cols=91 Identities=22% Similarity=0.327 Sum_probs=61.2
Q ss_pred CeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc-cccccccCCCcEEEEEecC----CCCCCChhhccCC
Q 001162 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-EKRKSSCGIGPIAFVASAQ----SLEKIPQSLTSSG 730 (1134)
Q Consensus 656 PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~-~~~~~~~~~~~V~vIattn----~~~~Ld~aL~~~g 730 (1134)
-+|+||||||+++.... ..+. .-+...+.+-|+-+.++.. ....+......+.+||+.- .|.+|-|.|..
T Consensus 251 ~GIvFIDEIDKIa~~~~-~g~~--dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG-- 325 (444)
T COG1220 251 NGIVFIDEIDKIAKRGG-SGGP--DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG-- 325 (444)
T ss_pred cCeEEEehhhHHHhcCC-CCCC--CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--
Confidence 45999999999985433 1211 1223355666666665432 1122234445788998853 36677788876
Q ss_pred CccccccCCCCCHHHHHHHHH
Q 001162 731 RFDFHVQLPAPAASERKAILE 751 (1134)
Q Consensus 731 RF~~~i~l~~P~~eeR~~IL~ 751 (1134)
||+..+++...+.++...||.
T Consensus 326 RfPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 326 RFPIRVELDALTKEDFERILT 346 (444)
T ss_pred CCceEEEcccCCHHHHHHHHc
Confidence 999999999999999999885
No 363
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.62 E-value=2.4e-07 Score=114.32 Aligned_cols=132 Identities=20% Similarity=0.257 Sum_probs=90.8
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHcCC--cEEEEeCcccchhcccccH--HHHH--------HHHHHhhhcCCeEEEEcC
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAACSL--RFISVKGPELLNKYIGASE--QAVR--------DIFSKATAAAPCLLFFDE 945 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~~~--~~i~i~~~el~~~~~G~se--~~v~--------~lf~~A~~~~P~VLfiDE 945 (1134)
-.|+||.|+||||||++|++++..+.. +|+.+.....-+...|.-. ..++ .++..|.+ .+||+||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~---GvL~lDE 92 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPR---GVLYVDM 92 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCC---CcEeccc
Confidence 358999999999999999999998854 5888875333333334310 0000 01222222 4999999
Q ss_pred cccccCCCCCCCCcchhhHHHhHhhhccccc-----------ccccEEEEEecCCCC---ccchhhcCcCcccceeecC-
Q 001162 946 FDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-----------VLTGVFVFAATSRPD---LLDAALLRPGRLDRLLFCD- 1010 (1134)
Q Consensus 946 id~l~~~r~~~~~~~~~rv~~~lL~~ld~~~-----------~~~~v~vIatTn~p~---~ld~allrpgRfd~~i~~~- 1010 (1134)
++.+ ...+.+.|+..|+.-. ....+.||+|+|..+ .+.++|+. ||+..+.+.
T Consensus 93 i~rl-----------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~ 159 (589)
T TIGR02031 93 ANLL-----------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLED 159 (589)
T ss_pred hhhC-----------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCC
Confidence 9998 4567778888775311 113578888888765 58899999 999887665
Q ss_pred CCCHHHHHHHHHHHH
Q 001162 1011 FPSPRERLDILKVIS 1025 (1134)
Q Consensus 1011 ~p~~~er~~Il~~~~ 1025 (1134)
+|+.++|.+|++...
T Consensus 160 ~~~~~er~eil~~~~ 174 (589)
T TIGR02031 160 VASQDLRVEIVRRER 174 (589)
T ss_pred CCCHHHHHHHHHHHH
Confidence 457788999998765
No 364
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.62 E-value=3.7e-07 Score=105.03 Aligned_cols=168 Identities=18% Similarity=0.185 Sum_probs=96.1
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhc-----ccccH-------HHHHHHHHHhhhcCCeEEE
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY-----IGASE-------QAVRDIFSKATAAAPCLLF 942 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~-----~G~se-------~~v~~lf~~A~~~~P~VLf 942 (1134)
..++||+|++||||+++|+++.... +.+|+.++|..+-... .|... ..-..+|+.|.++ +||
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gG---tL~ 98 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERADGG---TLF 98 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCCCC---EEE
Confidence 4579999999999999999998766 4799999998653211 11110 0112345555544 999
Q ss_pred EcCcccccCCCCCCCCcchhhHHHhHhhhccccc--c-------cccEEEEEecCCCC-------ccchhhcCcCccc-c
Q 001162 943 FDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V-------LTGVFVFAATSRPD-------LLDAALLRPGRLD-R 1005 (1134)
Q Consensus 943 iDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~--~-------~~~v~vIatTn~p~-------~ld~allrpgRfd-~ 1005 (1134)
||||+.| ...+...|+..|+.-. . ..++-||++|+..- .+.+.|.. ||. .
T Consensus 99 Ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~ 165 (329)
T TIGR02974 99 LDELATA-----------SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLAFD 165 (329)
T ss_pred eCChHhC-----------CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hhcch
Confidence 9999998 3445566666654211 1 13477888887631 24455555 663 3
Q ss_pred eeecCCCC--HHHHHHHHHHHHcc----CCCC--CcccHHHHH---HhccCCcHHHHHHHHHHHHHH
Q 001162 1006 LLFCDFPS--PRERLDILKVISRK----LPLA--DDVDLEAIA---HMTEGFSGADLQALLSDAQLS 1061 (1134)
Q Consensus 1006 ~i~~~~p~--~~er~~Il~~~~~~----~~~~--~~vd~~~La---~~t~g~sg~dl~~l~~~A~~~ 1061 (1134)
.|.+|+.. .++...+++.++.+ .+.. ..++.+.+. .+.---+-++|++++..|+..
T Consensus 166 ~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~ 232 (329)
T TIGR02974 166 VITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYR 232 (329)
T ss_pred hcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 44554443 23444444544432 2222 234444333 332222346777777666554
No 365
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.62 E-value=3.4e-07 Score=111.58 Aligned_cols=165 Identities=19% Similarity=0.196 Sum_probs=99.9
Q ss_pred CCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCc-EEEE---eCcccch----
Q 001162 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-FISV---KGPELLN---- 916 (1134)
Q Consensus 845 ~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~-~i~i---~~~el~~---- 916 (1134)
.|.|++.+|..+.-.+..... +..-.....+...|+||+|+||||||++|+++++..... |+.. ++..+..
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~-~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVH-KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCc-cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 467888888777655543211 001111123344589999999999999999999987533 3221 1211211
Q ss_pred -hcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc-----------ccccEEEE
Q 001162 917 -KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-----------VLTGVFVF 984 (1134)
Q Consensus 917 -~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~-----------~~~~v~vI 984 (1134)
...|+.. .-...+..|.+ .+++|||++.+. ......|+..|+.-. -..++.||
T Consensus 283 ~~~~g~~~-~~~G~l~~A~~---Gil~iDEi~~l~-----------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~vi 347 (509)
T smart00350 283 DPETREFT-LEGGALVLADN---GVCCIDEFDKMD-----------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVL 347 (509)
T ss_pred ccCcceEE-ecCccEEecCC---CEEEEechhhCC-----------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEE
Confidence 1111100 00011223333 499999999983 334555666664311 12468899
Q ss_pred EecCCCC-------------ccchhhcCcCccccee-ecCCCCHHHHHHHHHHHHcc
Q 001162 985 AATSRPD-------------LLDAALLRPGRLDRLL-FCDFPSPRERLDILKVISRK 1027 (1134)
Q Consensus 985 atTn~p~-------------~ld~allrpgRfd~~i-~~~~p~~~er~~Il~~~~~~ 1027 (1134)
||+|..+ .+++++++ |||-++ ..+.|+.+...+|.+.++..
T Consensus 348 Aa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 348 AAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred EEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 9998542 48899999 999865 55789999999999887653
No 366
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=3.2e-07 Score=105.77 Aligned_cols=132 Identities=17% Similarity=0.190 Sum_probs=86.4
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhccCCce------------------eeEEEEEecccccccchhhHHHHHHHHHHH
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL------------------VAHIVFVCCSRLSLEKGPIIRQALSNFISE 650 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~~~~~~------------------~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~ 650 (1134)
.|..+||+||+|+|||++|+++|+.+...... ...+.++..+. .....+ .++++.+.
T Consensus 27 l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~-~~i~id----~ir~l~~~ 101 (329)
T PRK08058 27 LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDG-QSIKKD----QIRYLKEE 101 (329)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecccc-ccCCHH----HHHHHHHH
Confidence 34568999999999999999999997532200 01122222211 001122 34444433
Q ss_pred Hh----hcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhh
Q 001162 651 AL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSL 726 (1134)
Q Consensus 651 a~----~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL 726 (1134)
+. .....|++|||+|.+.. ...+.|+..+++... .+++|.+|+.++.+.+.+
T Consensus 102 ~~~~~~~~~~kvviI~~a~~~~~---------------~a~NaLLK~LEEPp~---------~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 102 FSKSGVESNKKVYIIEHADKMTA---------------SAANSLLKFLEEPSG---------GTTAILLTENKHQILPTI 157 (329)
T ss_pred HhhCCcccCceEEEeehHhhhCH---------------HHHHHHHHHhcCCCC---------CceEEEEeCChHhCcHHH
Confidence 32 12345999999999841 345567777776443 367777888888999999
Q ss_pred ccCCCccccccCCCCCHHHHHHHHHH
Q 001162 727 TSSGRFDFHVQLPAPAASERKAILEH 752 (1134)
Q Consensus 727 ~~~gRF~~~i~l~~P~~eeR~~IL~~ 752 (1134)
++ |.. .++|++|+.++..++|+.
T Consensus 158 rS--Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 158 LS--RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred Hh--hce-eeeCCCCCHHHHHHHHHH
Confidence 99 764 899999999998777753
No 367
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=5.8e-07 Score=102.94 Aligned_cols=202 Identities=18% Similarity=0.195 Sum_probs=126.6
Q ss_pred ccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccc
Q 001162 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1134)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~ 634 (1134)
.+.|.+..+..+.++++.-+. ...++.+.+.|-||||||.+..-+...+..... ...+++++|..+..
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle-----------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~-~~~~v~inc~sl~~ 218 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLE-----------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSK-SPVTVYINCTSLTE 218 (529)
T ss_pred CccchHHHHHHHHHHHHhhhh-----------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcc-cceeEEEeeccccc
Confidence 456788888888888876554 344577999999999999999877776653322 14568999986532
Q ss_pred cc--hh-------------hHHHHHHHHHHH-Hhhc-CCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q 001162 635 EK--GP-------------IIRQALSNFISE-ALDH-APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1134)
Q Consensus 635 ~~--~~-------------~~~~~l~~~f~~-a~~~-~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~ 697 (1134)
.. +. .........|+. .... .+-++++||+|.|+.... ..+..+ -.+..+
T Consensus 219 ~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~------------~vLy~l-Fewp~l 285 (529)
T KOG2227|consen 219 ASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ------------TVLYTL-FEWPKL 285 (529)
T ss_pred hHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc------------ceeeee-hhcccC
Confidence 11 00 011111222222 1222 366899999999973111 111111 122233
Q ss_pred ccccccccCCCcEEEEEecCCCCCCChhhc---c-CCCccccccCCCCCHHHHHHHHHHHhhhcccC-CCHHHHHHHhhh
Q 001162 698 GEKRKSSCGIGPIAFVASAQSLEKIPQSLT---S-SGRFDFHVQLPAPAASERKAILEHEIQRRSLE-CSDEILLDVASK 772 (1134)
Q Consensus 698 ~~~~~~~~~~~~V~vIattn~~~~Ld~aL~---~-~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~-~~~~~l~~la~~ 772 (1134)
... .+++||.+|..+.-|..|. . .+.-+..+.|++|+.++..+||+..+...... +-+.++..+|..
T Consensus 286 p~s--------r~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArK 357 (529)
T KOG2227|consen 286 PNS--------RIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARK 357 (529)
T ss_pred Ccc--------eeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 221 4899999998775443332 2 23445678999999999999999988764432 344568888888
Q ss_pred cCCCChhhHHHH---HHHHHH
Q 001162 773 CDGYDAYDLEIL---VDRTVH 790 (1134)
Q Consensus 773 teG~s~~DL~~L---v~~a~~ 790 (1134)
..|.+| |++.+ |++|+.
T Consensus 358 vaa~SG-DlRkaLdv~R~aiE 377 (529)
T KOG2227|consen 358 VAAPSG-DLRKALDVCRRAIE 377 (529)
T ss_pred hccCch-hHHHHHHHHHHHHH
Confidence 888777 66544 444443
No 368
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.60 E-value=4e-07 Score=111.31 Aligned_cols=192 Identities=18% Similarity=0.278 Sum_probs=107.4
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchh
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK 917 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~ 917 (1134)
..|+++.|....-+.+.+.+.... .....+||+|++||||+++|+++.... +.+|+.++|+.+-..
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A-----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~ 269 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLA-----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDD 269 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHH
Confidence 578888887765555554443211 123469999999999999999997765 468999999876321
Q ss_pred -----cccccH-------HHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccc--cc------
Q 001162 918 -----YIGASE-------QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV--EV------ 977 (1134)
Q Consensus 918 -----~~G~se-------~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~--~~------ 977 (1134)
..|... ..-..+|+.|.++ .|||||++.|. ..+...|+..+..- ..
T Consensus 270 ~~e~elFG~~~~~~~~~~~~~~g~~e~a~~G---tL~LdeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~ 335 (520)
T PRK10820 270 VVESELFGHAPGAYPNALEGKKGFFEQANGG---SVLLDEIGEMS-----------PRMQAKLLRFLNDGTFRRVGEDHE 335 (520)
T ss_pred HHHHHhcCCCCCCcCCcccCCCChhhhcCCC---EEEEeChhhCC-----------HHHHHHHHHHHhcCCcccCCCCcc
Confidence 112110 1112356666544 89999999983 34455555555321 11
Q ss_pred -cccEEEEEecCCCC--c-----cchhhcCcCcccceeecCCCCHHHHH----HHHHHHH----ccCCCC-CcccHHHHH
Q 001162 978 -LTGVFVFAATSRPD--L-----LDAALLRPGRLDRLLFCDFPSPRERL----DILKVIS----RKLPLA-DDVDLEAIA 1040 (1134)
Q Consensus 978 -~~~v~vIatTn~p~--~-----ld~allrpgRfd~~i~~~~p~~~er~----~Il~~~~----~~~~~~-~~vd~~~La 1040 (1134)
..++-||+||+.+- . +.+.|.. |+.. +.+..|...+|. .+++.++ .+.+.. ..+..+.+.
T Consensus 336 ~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~-~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~ 412 (520)
T PRK10820 336 VHVDVRVICATQKNLVELVQKGEFREDLYY--RLNV-LTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNT 412 (520)
T ss_pred eeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCe-eEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 12467888887642 1 2333444 5432 444555554444 3333333 333321 234445444
Q ss_pred Hhcc-CCc--HHHHHHHHHHHHH
Q 001162 1041 HMTE-GFS--GADLQALLSDAQL 1060 (1134)
Q Consensus 1041 ~~t~-g~s--g~dl~~l~~~A~~ 1060 (1134)
.... .+. -++|++++..|..
T Consensus 413 ~L~~y~WPGNvreL~nvl~~a~~ 435 (520)
T PRK10820 413 VLTRYGWPGNVRQLKNAIYRALT 435 (520)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHH
Confidence 4332 233 3666666655544
No 369
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.60 E-value=1.4e-07 Score=108.72 Aligned_cols=195 Identities=21% Similarity=0.240 Sum_probs=117.1
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc----CCcEEEEeCcccch
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGPELLN 916 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~----~~~~i~i~~~el~~ 916 (1134)
..+++++|-...-+.+.+.+.. + -+...++|++|++||||+.+|++|.... +.+||.+||+.+..
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~---~--------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKA---Y--------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHh---h--------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 4566777766655555555543 1 1334679999999999999999998543 57999999987643
Q ss_pred h-------------cccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc-------
Q 001162 917 K-------------YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE------- 976 (1134)
Q Consensus 917 ~-------------~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~------- 976 (1134)
. |.| ....-..+|+.|.++ +||+|||+.|-+ .....+++.||.-+
T Consensus 144 n~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~LP~-----------~~Q~kLl~~le~g~~~rvG~~ 208 (403)
T COG1221 144 NLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRLPP-----------EGQEKLLRVLEEGEYRRVGGS 208 (403)
T ss_pred CHHHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhCCH-----------hHHHHHHHHHHcCceEecCCC
Confidence 1 445 233345688888777 999999999844 35556777776421
Q ss_pred --ccccEEEEEecCC-C-Cccch--hhcCcCcccceeecCCCCH--HHHHHHHHH----HHccCCCCCcccHHHHHHhcc
Q 001162 977 --VLTGVFVFAATSR-P-DLLDA--ALLRPGRLDRLLFCDFPSP--RERLDILKV----ISRKLPLADDVDLEAIAHMTE 1044 (1134)
Q Consensus 977 --~~~~v~vIatTn~-p-~~ld~--allrpgRfd~~i~~~~p~~--~er~~Il~~----~~~~~~~~~~vd~~~La~~t~ 1044 (1134)
....|.+|+||+. + +.+-. .+.++ |+...|.+|+... +++..+.+. .+++++...-.+.....+...
T Consensus 209 ~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~ 287 (403)
T COG1221 209 QPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALL 287 (403)
T ss_pred CCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 1234778887775 2 22333 34431 4555556655443 333333333 344555443333322222222
Q ss_pred CC----cHHHHHHHHHHHHHHH
Q 001162 1045 GF----SGADLQALLSDAQLSA 1062 (1134)
Q Consensus 1045 g~----sg~dl~~l~~~A~~~a 1062 (1134)
.| +-++++++++.+...+
T Consensus 288 ~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 288 AYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred hCCCCCcHHHHHHHHHHHHHHh
Confidence 22 3478888888777665
No 370
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=8.2e-07 Score=100.95 Aligned_cols=129 Identities=19% Similarity=0.228 Sum_probs=95.4
Q ss_pred CCCCceEEEcCCCCchhHHHHHHHHHcCC-----------------------cEEEEeCcccchhcccccHHHHHHHHHH
Q 001162 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSL-----------------------RFISVKGPELLNKYIGASEQAVRDIFSK 932 (1134)
Q Consensus 876 ~~~~~vLL~GppGtGKT~lA~alA~~~~~-----------------------~~i~i~~~el~~~~~G~se~~v~~lf~~ 932 (1134)
+.+..+||+||.|+||+++|+++|+.+-. .|+.+.+.+ .++.+ +-+.+|++.+.
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~~ 99 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNRL 99 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHHH
Confidence 44567999999999999999999986621 233332211 01111 23556666554
Q ss_pred h----hhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceee
Q 001162 933 A----TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLF 1008 (1134)
Q Consensus 933 A----~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~ 1008 (1134)
+ ..+...|++||++|.| .....|.||+.|+ ++..++++|..|+.++.+-|.+++ |+. .+.
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTI~S--RCq-~~~ 163 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAM-----------NESASNALLKTLE--EPAPNCLFLLVTHNQKRLLPTIVS--RCQ-QWV 163 (319)
T ss_pred HhhCcccCCceEEEecchhhh-----------CHHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--cce-eEe
Confidence 4 2344579999999998 5678899999998 677889999999999999999999 664 678
Q ss_pred cCCCCHHHHHHHHHH
Q 001162 1009 CDFPSPRERLDILKV 1023 (1134)
Q Consensus 1009 ~~~p~~~er~~Il~~ 1023 (1134)
|++|+.++..+.+..
T Consensus 164 ~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 164 VTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999988877754
No 371
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.59 E-value=3.3e-07 Score=105.48 Aligned_cols=192 Identities=19% Similarity=0.198 Sum_probs=108.1
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchh--
Q 001162 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK-- 917 (1134)
Q Consensus 843 ~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~-- 917 (1134)
++++.|....-+.+.+.+.... ....++||+|++||||+++|+++.... +.+|+.++|..+-..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a-----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 4556676666565555554321 224579999999999999999998766 469999999876321
Q ss_pred ---cccccH-------HHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccc--cc-------c
Q 001162 918 ---YIGASE-------QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV--EV-------L 978 (1134)
Q Consensus 918 ---~~G~se-------~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~--~~-------~ 978 (1134)
+.|... ......|..|.++ .|||||+|.|. ..+...|+..++.- .. .
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~gG---tL~l~~i~~L~-----------~~~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERADGG---TLFLDELATAP-----------MLVQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHccccccccCCcccccCCchhccCCC---eEEeCChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceee
Confidence 112110 0112345555444 99999999983 34555666555421 11 1
Q ss_pred ccEEEEEecCCC-------CccchhhcCcCccc-ceeecCCCCH--HHHHHHHHHHHc----cCCCC--CcccHHHHHHh
Q 001162 979 TGVFVFAATSRP-------DLLDAALLRPGRLD-RLLFCDFPSP--RERLDILKVISR----KLPLA--DDVDLEAIAHM 1042 (1134)
Q Consensus 979 ~~v~vIatTn~p-------~~ld~allrpgRfd-~~i~~~~p~~--~er~~Il~~~~~----~~~~~--~~vd~~~La~~ 1042 (1134)
..+.||+||+.. ..+.+.|.. ||. ..|.+|+... ++...+++.++. +.+.. ..++.+.+...
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L 217 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETL 217 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence 247788887763 124455655 663 3445554432 334444554432 22221 23444444332
Q ss_pred c-cCCc--HHHHHHHHHHHHHH
Q 001162 1043 T-EGFS--GADLQALLSDAQLS 1061 (1134)
Q Consensus 1043 t-~g~s--g~dl~~l~~~A~~~ 1061 (1134)
. ..+. -++|++++..|...
T Consensus 218 ~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 218 LNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HhCCCCcHHHHHHHHHHHHHHh
Confidence 2 2233 46777777766543
No 372
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.59 E-value=1.2e-07 Score=98.23 Aligned_cols=111 Identities=25% Similarity=0.381 Sum_probs=71.6
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchh-----cccccH-------HHHHHHHHHhhhcCCeEEEE
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK-----YIGASE-------QAVRDIFSKATAAAPCLLFF 943 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~-----~~G~se-------~~v~~lf~~A~~~~P~VLfi 943 (1134)
.++||+|++||||+.+|+++.+.. +.+|+.++|+.+-.. ..|... ..-..+|+.|.++ +|||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGG---TLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTS---EEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccce---EEee
Confidence 579999999999999999999876 479999999876322 122211 1123678888777 9999
Q ss_pred cCcccccCCCCCCCCcchhhHHHhHhhhcccc--c-------ccccEEEEEecCCCCccchhhcCcCcccce
Q 001162 944 DEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV--E-------VLTGVFVFAATSRPDLLDAALLRPGRLDRL 1006 (1134)
Q Consensus 944 DEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~--~-------~~~~v~vIatTn~p~~ld~allrpgRfd~~ 1006 (1134)
|||+.| ...+...|+..|+.- . ..-++-||+||+.+ +...+. .|+|..-
T Consensus 100 d~I~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~--l~~~v~-~g~fr~d 157 (168)
T PF00158_consen 100 DEIEDL-----------PPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD--LEELVE-QGRFRED 157 (168)
T ss_dssp ETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS---HHHHHH-TTSS-HH
T ss_pred cchhhh-----------HHHHHHHHHHHHhhchhccccccccccccceEEeecCcC--HHHHHH-cCCChHH
Confidence 999999 445666777766521 1 11258888898863 333332 3555543
No 373
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=1.3e-06 Score=100.49 Aligned_cols=173 Identities=17% Similarity=0.188 Sum_probs=111.9
Q ss_pred cchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc------------------
Q 001162 558 WMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------------ 619 (1134)
Q Consensus 558 G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~------------------ 619 (1134)
|+....+.+.+.+.. ...+..+||+||+|+||+++|+++|+.+-....
T Consensus 6 Wl~~~~~~l~~~~~~--------------~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g 71 (334)
T PRK07993 6 WLRPDYEQLVGSYQA--------------GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAG 71 (334)
T ss_pred CChHHHHHHHHHHHc--------------CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 566666666654422 233466999999999999999999999853210
Q ss_pred eeeEEEEEecccc-cccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 001162 620 LVAHIVFVCCSRL-SLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 698 (1134)
Q Consensus 620 ~~~~~~~v~~s~l-~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~ 698 (1134)
..-.+.++....- ..-..+.++.....+........-.|++||++|.|.. ...+.|+..+++-.
T Consensus 72 ~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLEEPp 136 (334)
T PRK07993 72 THPDYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTD---------------AAANALLKTLEEPP 136 (334)
T ss_pred CCCCEEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCH---------------HHHHHHHHHhcCCC
Confidence 0011233322211 1123444554444443334334456999999999851 44566777777643
Q ss_pred cccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCC
Q 001162 699 EKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGY 776 (1134)
Q Consensus 699 ~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~ 776 (1134)
. +.++|..|..++.+.|.++| |.. .+.|++|+.++..+.|... ..++++....++..+.|-
T Consensus 137 ~---------~t~fiL~t~~~~~lLpTIrS--RCq-~~~~~~~~~~~~~~~L~~~-----~~~~~~~a~~~~~la~G~ 197 (334)
T PRK07993 137 E---------NTWFFLACREPARLLATLRS--RCR-LHYLAPPPEQYALTWLSRE-----VTMSQDALLAALRLSAGA 197 (334)
T ss_pred C---------CeEEEEEECChhhChHHHHh--ccc-cccCCCCCHHHHHHHHHHc-----cCCCHHHHHHHHHHcCCC
Confidence 2 47888888999999999999 766 7899999998888777532 124555555666677774
No 374
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.58 E-value=3.5e-07 Score=105.26 Aligned_cols=128 Identities=24% Similarity=0.314 Sum_probs=86.8
Q ss_pred eEEEEcCCCccHHHHHHHHHHHhccCCc------------------eeeEEEEEecccccccchhhHHHHHHHHHHHHhh
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSLEHHKD------------------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD 653 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l~~~~~------------------~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~ 653 (1134)
.+||+||||+|||++|.++|+.+..... ....+..++.++..... .....++++.+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhcc
Confidence 4999999999999999999999873221 11357777777766542 122333444333322
Q ss_pred ----cCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccC
Q 001162 654 ----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSS 729 (1134)
Q Consensus 654 ----~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~ 729 (1134)
...-|++|||+|.+.. ...+.+...++.... +..+|.+||.+..+-+.+++
T Consensus 104 ~~~~~~~kviiidead~mt~---------------~A~nallk~lEep~~---------~~~~il~~n~~~~il~tI~S- 158 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTE---------------DAANALLKTLEEPPK---------NTRFILITNDPSKILPTIRS- 158 (325)
T ss_pred CCCCCCceEEEeCcHHHHhH---------------HHHHHHHHHhccCCC---------CeEEEEEcCChhhccchhhh-
Confidence 2346999999999962 334556666665443 47888999999999999998
Q ss_pred CCccccccCCCCCHHHHHH
Q 001162 730 GRFDFHVQLPAPAASERKA 748 (1134)
Q Consensus 730 gRF~~~i~l~~P~~eeR~~ 748 (1134)
|.. .+.|++|+...+..
T Consensus 159 -Rc~-~i~f~~~~~~~~i~ 175 (325)
T COG0470 159 -RCQ-RIRFKPPSRLEAIA 175 (325)
T ss_pred -cce-eeecCCchHHHHHH
Confidence 654 78888755544443
No 375
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=1.4e-06 Score=99.28 Aligned_cols=156 Identities=13% Similarity=0.135 Sum_probs=101.2
Q ss_pred ccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCce----------------
Q 001162 557 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL---------------- 620 (1134)
Q Consensus 557 ~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~---------------- 620 (1134)
-|+....+.+...+.. ...+..+||+||+|+||+++|+++|+.+-.....
T Consensus 5 PW~~~~~~~l~~~~~~--------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~ 70 (325)
T PRK06871 5 PWLQPTYQQITQAFQQ--------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQA 70 (325)
T ss_pred cchHHHHHHHHHHHHc--------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhc
Confidence 3566666666554422 2234669999999999999999999998642110
Q ss_pred --eeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 001162 621 --VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 698 (1134)
Q Consensus 621 --~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~ 698 (1134)
.-.+.++....=..-..+.++.....+...+....-.|++||++|.|.. .-.+.|+..+++-.
T Consensus 71 g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~---------------~AaNaLLKtLEEPp 135 (325)
T PRK06871 71 GNHPDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTE---------------AAANALLKTLEEPR 135 (325)
T ss_pred CCCCCEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCH---------------HHHHHHHHHhcCCC
Confidence 0113333221101123344444333333333333446999999999851 44566777777643
Q ss_pred cccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHH
Q 001162 699 EKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHE 753 (1134)
Q Consensus 699 ~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~ 753 (1134)
. .+++|.+|+.++.+.|.++| |.. .+.|++|+.++..+.|...
T Consensus 136 ~---------~~~fiL~t~~~~~llpTI~S--RC~-~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 136 P---------NTYFLLQADLSAALLPTIYS--RCQ-TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred C---------CeEEEEEECChHhCchHHHh--hce-EEeCCCCCHHHHHHHHHHH
Confidence 2 47888899999999999999 765 8899999999988877653
No 376
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.58 E-value=8.2e-07 Score=98.54 Aligned_cols=188 Identities=20% Similarity=0.225 Sum_probs=112.1
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc---------CCcEEEEeCcccch--------------hc-cccc-HHHHHHHHHHh
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC---------SLRFISVKGPELLN--------------KY-IGAS-EQAVRDIFSKA 933 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~---------~~~~i~i~~~el~~--------------~~-~G~s-e~~v~~lf~~A 933 (1134)
.++||+|++|.|||++++.++... ..+++.+.++.--+ .| ...+ .+.-..+...-
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999755 24677776643211 01 0111 12222233344
Q ss_pred hhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccccccc--EEEEEecCCCCc--cchhhcCcCcccceeec
Q 001162 934 TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTG--VFVFAATSRPDL--LDAALLRPGRLDRLLFC 1009 (1134)
Q Consensus 934 ~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~--v~vIatTn~p~~--ld~allrpgRfd~~i~~ 1009 (1134)
+..++.+|+|||+|.+..... ...+.+-.+|+.| .+.-. ++.+||-.-... -|+.+.+ ||+.. .+
T Consensus 142 r~~~vrmLIIDE~H~lLaGs~-----~~qr~~Ln~LK~L---~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~~~-~L 210 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGSY-----RKQREFLNALKFL---GNELQIPIVGVGTREAYRALRTDPQLAS--RFEPF-EL 210 (302)
T ss_pred HHcCCcEEEeechHHHhcccH-----HHHHHHHHHHHHH---hhccCCCeEEeccHHHHHHhccCHHHHh--ccCCc-cC
Confidence 556677999999999864321 1222222333333 22222 444443322222 4788888 99754 45
Q ss_pred CCCCH-HHHHHHHHHHHccCCCC--CcccHH----HHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccc
Q 001162 1010 DFPSP-RERLDILKVISRKLPLA--DDVDLE----AIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVIT 1082 (1134)
Q Consensus 1010 ~~p~~-~er~~Il~~~~~~~~~~--~~vd~~----~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it 1082 (1134)
|.... ++...++..+.+.+++. ...... .|-..++|.. +++..++..|+..|++. +...||
T Consensus 211 p~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i-G~l~~ll~~aA~~AI~s-----------G~E~It 278 (302)
T PF05621_consen 211 PRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI-GELSRLLNAAAIAAIRS-----------GEERIT 278 (302)
T ss_pred CCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHhc-----------CCceec
Confidence 65543 45666777777766654 233333 4445677655 56778899999988864 556899
Q ss_pred HHHHHHH
Q 001162 1083 DALLKSI 1089 (1134)
Q Consensus 1083 ~e~l~~a 1089 (1134)
.+++...
T Consensus 279 ~~~l~~~ 285 (302)
T PF05621_consen 279 REILDKI 285 (302)
T ss_pred HHHHhhC
Confidence 9888863
No 377
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.58 E-value=8e-07 Score=109.25 Aligned_cols=202 Identities=14% Similarity=0.162 Sum_probs=109.0
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
...+.++.|.+..++++...+..... +..+..-++|+||||||||++++.+|+.++..... ..-.++|
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~----------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E--w~npv~~ 147 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVL----------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQE--WSNPTLP 147 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhccc----------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH--Hhhhhhh
Confidence 34467888888888887776644321 12233449999999999999999999987632110 0111222
Q ss_pred ccccc------------cchhhHHHHHHHHHHHHh----------hcCCeEEEEcccchhccCCCCCCCCCCchhHHHHH
Q 001162 630 SRLSL------------EKGPIIRQALSNFISEAL----------DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALT 687 (1134)
Q Consensus 630 s~l~~------------~~~~~~~~~l~~~f~~a~----------~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~ 687 (1134)
..... .........+..++..+. .....||||||++.++.. .. ..+
T Consensus 148 ~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r--------~~----~~l 215 (637)
T TIGR00602 148 DFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR--------DT----RAL 215 (637)
T ss_pred cccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh--------hH----HHH
Confidence 11110 000111233444444443 134569999999987621 00 112
Q ss_pred HHHHHHHHHhccccccccCCCcEEEEEecCCC------C-C------CChhhccCCCccccccCCCCCHHHHHHHHHHHh
Q 001162 688 KFLVDIMDEYGEKRKSSCGIGPIAFVASAQSL------E-K------IPQSLTSSGRFDFHVQLPAPAASERKAILEHEI 754 (1134)
Q Consensus 688 ~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~------~-~------Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l 754 (1134)
+.++.. .+.... ..++++|.+-+.. + . +.+++++..|.. +|.|++.+..+..+.|+..+
T Consensus 216 q~lLr~--~~~e~~-----~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl 287 (637)
T TIGR00602 216 HEILRW--KYVSIG-----RCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIV 287 (637)
T ss_pred HHHHHH--HhhcCC-----CceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHH
Confidence 222220 111111 1123333332211 0 1 335666533443 78999999999888888777
Q ss_pred hhcccC------C-CHHHHHHHhhhcCCCChhhHHHHHHH
Q 001162 755 QRRSLE------C-SDEILLDVASKCDGYDAYDLEILVDR 787 (1134)
Q Consensus 755 ~~~~l~------~-~~~~l~~la~~teG~s~~DL~~Lv~~ 787 (1134)
...... + +++.+..|+....| |++..+..
T Consensus 288 ~~E~~~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~ 323 (637)
T TIGR00602 288 TIEAKKNGEKIKVPKKTSVELLCQGCSG----DIRSAINS 323 (637)
T ss_pred HhhhhccccccccCCHHHHHHHHHhCCC----hHHHHHHH
Confidence 653221 2 35678888886666 65555543
No 378
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.58 E-value=2.3e-07 Score=107.11 Aligned_cols=193 Identities=25% Similarity=0.336 Sum_probs=119.7
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccch-
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN- 916 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~- 916 (1134)
.....|+|....-..+.+.++... .....||+.|.+||||..+|++|.+.. +.+|+.+||+.+-.
T Consensus 220 ~~~~~iIG~S~am~~ll~~i~~VA-----------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 220 LEVGGIIGRSPAMRQLLKEIEVVA-----------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred cccccceecCHHHHHHHHHHHHHh-----------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 456678888888888888777542 234579999999999999999999988 47999999976532
Q ss_pred ------------hcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccc--ccc--cc-
Q 001162 917 ------------KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDG--VEV--LT- 979 (1134)
Q Consensus 917 ------------~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~--~~~--~~- 979 (1134)
.|.|.... -+.-|+.|.++ -||+|||..|- -.+...||..|.. ++. .+
T Consensus 289 LlESELFGHeKGAFTGA~~~-r~GrFElAdGG---TLFLDEIGelP-----------L~lQaKLLRvLQegEieRvG~~r 353 (550)
T COG3604 289 LLESELFGHEKGAFTGAINT-RRGRFELADGG---TLFLDEIGELP-----------LALQAKLLRVLQEGEIERVGGDR 353 (550)
T ss_pred HHHHHHhcccccccccchhc-cCcceeecCCC---eEechhhccCC-----------HHHHHHHHHHHhhcceeecCCCc
Confidence 12232221 13456777666 99999999883 3455566655532 111 11
Q ss_pred ----cEEEEEecCCCCccchhhcCcCcccceee-------cCCCCHHHHH--------HHHHHHHccCCC-CCcccHHHH
Q 001162 980 ----GVFVFAATSRPDLLDAALLRPGRLDRLLF-------CDFPSPRERL--------DILKVISRKLPL-ADDVDLEAI 1039 (1134)
Q Consensus 980 ----~v~vIatTn~p~~ld~allrpgRfd~~i~-------~~~p~~~er~--------~Il~~~~~~~~~-~~~vd~~~L 1039 (1134)
.|-||||||+ .+-.++.. |+|-.-+| +..|-..+|. .+++.+.++++. ...++-+++
T Consensus 354 ~ikVDVRiIAATNR--DL~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al 430 (550)
T COG3604 354 TIKVDVRVIAATNR--DLEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEAL 430 (550)
T ss_pred eeEEEEEEEeccch--hHHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHH
Confidence 3889999998 33333333 55543222 2234433332 223333444454 223333333
Q ss_pred HHhc-cCCcH--HHHHHHHHHHHHHH
Q 001162 1040 AHMT-EGFSG--ADLQALLSDAQLSA 1062 (1134)
Q Consensus 1040 a~~t-~g~sg--~dl~~l~~~A~~~a 1062 (1134)
.... -+|.| +++++++..|++.|
T Consensus 431 ~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 431 ELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 3322 12554 89999999999877
No 379
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.57 E-value=4.1e-07 Score=94.01 Aligned_cols=122 Identities=23% Similarity=0.309 Sum_probs=77.4
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhccCCce-----------------eeEEEEEeccccc-ccchhhHHHHHHHHHHH
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-----------------VAHIVFVCCSRLS-LEKGPIIRQALSNFISE 650 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~~~~~~-----------------~~~~~~v~~s~l~-~~~~~~~~~~l~~~f~~ 650 (1134)
.|..+||+||+|+||+++|+++|+.+-..... ...+..++...-. .-..+. ++++...
T Consensus 18 l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~----ir~i~~~ 93 (162)
T PF13177_consen 18 LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQ----IREIIEF 93 (162)
T ss_dssp --SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHH----HHHHHHH
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHH----HHHHHHH
Confidence 34669999999999999999999987643221 2334455444321 122233 3333333
Q ss_pred Hh----hcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhh
Q 001162 651 AL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSL 726 (1134)
Q Consensus 651 a~----~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL 726 (1134)
+. .....|++|||+|.|. ....+.|+..+++... ++.+|.+|+.++.+.+.+
T Consensus 94 ~~~~~~~~~~KviiI~~ad~l~---------------~~a~NaLLK~LEepp~---------~~~fiL~t~~~~~il~TI 149 (162)
T PF13177_consen 94 LSLSPSEGKYKVIIIDEADKLT---------------EEAQNALLKTLEEPPE---------NTYFILITNNPSKILPTI 149 (162)
T ss_dssp CTSS-TTSSSEEEEEETGGGS----------------HHHHHHHHHHHHSTTT---------TEEEEEEES-GGGS-HHH
T ss_pred HHHHHhcCCceEEEeehHhhhh---------------HHHHHHHHHHhcCCCC---------CEEEEEEECChHHChHHH
Confidence 32 2345699999999985 2556778888887653 488999999999999999
Q ss_pred ccCCCccccccCCCC
Q 001162 727 TSSGRFDFHVQLPAP 741 (1134)
Q Consensus 727 ~~~gRF~~~i~l~~P 741 (1134)
+| |.. .+.|++.
T Consensus 150 ~S--Rc~-~i~~~~l 161 (162)
T PF13177_consen 150 RS--RCQ-VIRFRPL 161 (162)
T ss_dssp HT--TSE-EEEE---
T ss_pred Hh--hce-EEecCCC
Confidence 99 754 5666553
No 380
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.57 E-value=1.1e-07 Score=106.41 Aligned_cols=146 Identities=25% Similarity=0.391 Sum_probs=84.8
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHh-----------hcCCeE
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL-----------DHAPSI 658 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~-----------~~~PsI 658 (1134)
..++||+||+|||||++++.+-+.+.... .-+..++++.... ...++..++... ..+..|
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~---~~~~~~~~s~~Tt------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv 103 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDK---YLVITINFSAQTT------SNQLQKIIESKLEKRRGRVYGPPGGKKLV 103 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCC---EEEEEEES-TTHH------HHHHHHCCCTTECECTTEEEEEESSSEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccc---cceeEeeccCCCC------HHHHHHHHhhcEEcCCCCCCCCCCCcEEE
Confidence 36799999999999999998877654321 2244556554321 122222222211 123359
Q ss_pred EEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHH---hccccccccCCCcEEEEEecCCC---CCCChhhccCCCc
Q 001162 659 VIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE---YGEKRKSSCGIGPIAFVASAQSL---EKIPQSLTSSGRF 732 (1134)
Q Consensus 659 L~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~---~~~~~~~~~~~~~V~vIattn~~---~~Ld~aL~~~gRF 732 (1134)
+||||++... .+..+.+ ...+.|..+++. +...+..+....++.+||++++. ..++++|.| .|
T Consensus 104 ~fiDDlN~p~---~d~ygtq------~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f 172 (272)
T PF12775_consen 104 LFIDDLNMPQ---PDKYGTQ------PPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF 172 (272)
T ss_dssp EEEETTT-S------TTS--------HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE
T ss_pred EEecccCCCC---CCCCCCc------CHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he
Confidence 9999998754 3444443 334555555553 22223335555679999998863 246777876 56
Q ss_pred cccccCCCCCHHHHHHHHHHHhhh
Q 001162 733 DFHVQLPAPAASERKAILEHEIQR 756 (1134)
Q Consensus 733 ~~~i~l~~P~~eeR~~IL~~~l~~ 756 (1134)
. .+.++.|+.+....|+..++..
T Consensus 173 ~-i~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 173 N-ILNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp E-EEE----TCCHHHHHHHHHHHH
T ss_pred E-EEEecCCChHHHHHHHHHHHhh
Confidence 4 7899999999999999887764
No 381
>PRK08116 hypothetical protein; Validated
Probab=98.56 E-value=1.5e-07 Score=105.14 Aligned_cols=129 Identities=20% Similarity=0.226 Sum_probs=78.9
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhcc----cccHHHHHHHHHHhhhcCCeEEEEcCccccc
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYI----GASEQAVRDIFSKATAAAPCLLFFDEFDSIA 950 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~~----G~se~~v~~lf~~A~~~~P~VLfiDEid~l~ 950 (1134)
..+++|+|++|||||+||.++|+++ +.+++.++.++++..+. +.......++++.... ..+|+|||++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~--~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVN--ADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcC--CCEEEEecccCCC
Confidence 3479999999999999999999986 78899999988776542 2121222334444332 3599999996531
Q ss_pred CCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCC-Cc----cchhhcCcCcc---cceeecCCCCHHHHHHHHH
Q 001162 951 PKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP-DL----LDAALLRPGRL---DRLLFCDFPSPRERLDILK 1022 (1134)
Q Consensus 951 ~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p-~~----ld~allrpgRf---d~~i~~~~p~~~er~~Il~ 1022 (1134)
..+.....|...++........ +|.|||.+ +. ++..+.+ |+ ...|.|.-++. |..+.+
T Consensus 192 ---------~t~~~~~~l~~iin~r~~~~~~-~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~--R~~~~~ 257 (268)
T PRK08116 192 ---------DTEWAREKVYNIIDSRYRKGLP-TIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY--RKEIAK 257 (268)
T ss_pred ---------CCHHHHHHHHHHHHHHHHCCCC-EEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh--hHHHHH
Confidence 1234455566666654333333 44467764 33 4566666 64 23455555553 444444
No 382
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.54 E-value=1.9e-06 Score=92.82 Aligned_cols=63 Identities=29% Similarity=0.393 Sum_probs=44.5
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcC--CcEEEEeCccc
Q 001162 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPEL 914 (1134)
Q Consensus 844 ~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~--~~~i~i~~~el 914 (1134)
.-++|++.+++..--.+.+. +. ..-..+++||.||||||||.+|-++++++| .+|..+.++++
T Consensus 38 ~g~vGQ~~AReAagiivdli-k~-------KkmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEv 102 (456)
T KOG1942|consen 38 AGFVGQENAREAAGIIVDLI-KS-------KKMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEV 102 (456)
T ss_pred cccccchhhhhhhhHHHHHH-Hh-------hhccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhh
Confidence 45788988888755444321 11 112356899999999999999999999996 56665555554
No 383
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.54 E-value=1.9e-08 Score=97.47 Aligned_cols=115 Identities=23% Similarity=0.257 Sum_probs=58.2
Q ss_pred eEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc------cccccchhhHHHHHHHHHHHH-hhcCCeEEEEccc
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS------RLSLEKGPIIRQALSNFISEA-LDHAPSIVIFDNL 664 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s------~l~~~~~~~~~~~l~~~f~~a-~~~~PsIL~IDEi 664 (1134)
|+||.|+||+|||++|+++|+.++ ..+..|.|. ++.|...-.... ..|... ..-...|+++|||
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~------~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEi 71 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLG------LSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEI 71 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--------EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETG
T ss_pred CEeeECCCccHHHHHHHHHHHHcC------CceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeeccc
Confidence 699999999999999999999988 445555552 222211111000 000000 0001249999999
Q ss_pred chhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc--cccccCCCcEEEEEecCCCC-----CCChhhccCCCc
Q 001162 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK--RKSSCGIGPIAFVASAQSLE-----KIPQSLTSSGRF 732 (1134)
Q Consensus 665 D~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~--~~~~~~~~~V~vIattn~~~-----~Ld~aL~~~gRF 732 (1134)
.+..+ +....|++.|.+..-. ........++.||||.|+.+ .++.+++. ||
T Consensus 72 Nrapp---------------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 72 NRAPP---------------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp GGS-H---------------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ccCCH---------------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 87642 5566677777654321 11122344689999999876 57777777 66
No 384
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.53 E-value=3.3e-07 Score=100.43 Aligned_cols=163 Identities=18% Similarity=0.162 Sum_probs=108.0
Q ss_pred cCCCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCc------EEEE
Q 001162 836 AEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------FISV 909 (1134)
Q Consensus 836 ~~~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~------~i~i 909 (1134)
..+.+..++++.+.+++...+.++...+ .-.|+|||||||||||+...+.|..+..+ +.++
T Consensus 33 ekyrP~~l~dv~~~~ei~st~~~~~~~~-------------~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lel 99 (360)
T KOG0990|consen 33 EKYRPPFLGIVIKQEPIWSTENRYSGMP-------------GLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLEL 99 (360)
T ss_pred cCCCCchhhhHhcCCchhhHHHHhccCC-------------CCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHh
Confidence 3455677888999999888888874432 11289999999999999999999887543 2233
Q ss_pred eCcccchhcccccHHHHHHHHHHhhh-------cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEE
Q 001162 910 KGPELLNKYIGASEQAVRDIFSKATA-------AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVF 982 (1134)
Q Consensus 910 ~~~el~~~~~G~se~~v~~lf~~A~~-------~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~ 982 (1134)
+.++=.+ ++- .+.--..|..++. ..+..+++||+|++ +..+.|+|-...+.+... +-
T Consensus 100 naSd~rg--id~-vr~qi~~fast~~~~~fst~~~fKlvILDEADaM-----------T~~AQnALRRviek~t~n--~r 163 (360)
T KOG0990|consen 100 NASDDRG--IDP-VRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM-----------TRDAQNALRRVIEKYTAN--TR 163 (360)
T ss_pred hccCccC--Ccc-hHHHHHHHHhhccceeccccCceeEEEecchhHh-----------hHHHHHHHHHHHHHhccc--eE
Confidence 3333111 111 1222345555542 36789999999998 556777777766544433 33
Q ss_pred EEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCC
Q 001162 983 VFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPL 1030 (1134)
Q Consensus 983 vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~ 1030 (1134)
|...+|.|..+.|++++ ||.+. .|.+-+...-..++..+......
T Consensus 164 F~ii~n~~~ki~pa~qs--Rctrf-rf~pl~~~~~~~r~shi~e~e~~ 208 (360)
T KOG0990|consen 164 FATISNPPQKIHPAQQS--RCTRF-RFAPLTMAQQTERQSHIRESEQK 208 (360)
T ss_pred EEEeccChhhcCchhhc--ccccC-CCCCCChhhhhhHHHHHHhcchh
Confidence 44457999999999998 76643 56666666666667766655443
No 385
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.52 E-value=1.6e-06 Score=103.62 Aligned_cols=202 Identities=15% Similarity=0.174 Sum_probs=129.3
Q ss_pred ceEEEcCCCCchhHHHHHHHHHc----------CCcEEEEeCcccch----------hcccccH------HHHHHHHHHh
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVKGPELLN----------KYIGASE------QAVRDIFSKA 933 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~----------~~~~i~i~~~el~~----------~~~G~se------~~v~~lf~~A 933 (1134)
.+.+.|-||||||.+++.+-+++ ...+++||+-.|.+ .+.|+.. ..+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 57788999999999999988855 36789999877643 2334432 2233334322
Q ss_pred -hhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCcc----chhhcCcCccc-cee
Q 001162 934 -TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL----DAALLRPGRLD-RLL 1007 (1134)
Q Consensus 934 -~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~l----d~allrpgRfd-~~i 1007 (1134)
....++||+|||.|.|..+ ...++.-|...-. ....+++||+..|..+.. .....+ |++ ..|
T Consensus 504 k~~~~~~VvLiDElD~Lvtr--------~QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~tRi 571 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTR--------SQDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSS--RLGLTRI 571 (767)
T ss_pred CCCCCCEEEEeccHHHHhcc--------cHHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhh--hccceee
Confidence 3455789999999999765 2334444443321 245578888888877663 333333 665 467
Q ss_pred ecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHH--HHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHH
Q 001162 1008 FCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGA--DLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDAL 1085 (1134)
Q Consensus 1008 ~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~--dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~ 1085 (1134)
.|.+|+..+..+|+...++....-..-..+-+|+.-...||. -...+|+.|...|-++.. .........++..|
T Consensus 572 ~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~----~~k~~~~q~v~~~~ 647 (767)
T KOG1514|consen 572 CFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNV----KGKLAVSQLVGILH 647 (767)
T ss_pred ecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcc----cccccccceeehHH
Confidence 899999999999999999877332222234344443334442 223468877777766543 11223345789999
Q ss_pred HHHHHhhcCCCC
Q 001162 1086 LKSIASKARPSV 1097 (1134)
Q Consensus 1086 l~~al~~~~ps~ 1097 (1134)
+.+|+..+..+.
T Consensus 648 v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 648 VMEAINEMLASP 659 (767)
T ss_pred HHHHHHHHhhhh
Confidence 999998764433
No 386
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=2.4e-06 Score=97.23 Aligned_cols=157 Identities=20% Similarity=0.246 Sum_probs=98.2
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhccCCcee---------------eEEEEE--eccccccc-chhhHHHHHHHHHHH
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV---------------AHIVFV--CCSRLSLE-KGPIIRQALSNFISE 650 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~---------------~~~~~v--~~s~l~~~-~~~~~~~~l~~~f~~ 650 (1134)
.|..+||+||+|+||+++|+++|+.+-...... -.+.++ ..+.-..+ ...-....++++.+.
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~ 104 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQK 104 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHH
Confidence 345699999999999999999999875332100 012222 11110000 001112334444444
Q ss_pred Hhh----cCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhh
Q 001162 651 ALD----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSL 726 (1134)
Q Consensus 651 a~~----~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL 726 (1134)
+.. ..-.|++||++|.|.. .-.+.|+..+++... ++++|.+++.++.+.|.+
T Consensus 105 ~~~~p~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLEEPp~---------~~~fiL~~~~~~~lLpTI 160 (319)
T PRK08769 105 LALTPQYGIAQVVIVDPADAINR---------------AACNALLKTLEEPSP---------GRYLWLISAQPARLPATI 160 (319)
T ss_pred HhhCcccCCcEEEEeccHhhhCH---------------HHHHHHHHHhhCCCC---------CCeEEEEECChhhCchHH
Confidence 322 2335999999999841 445667777777543 367788888899999999
Q ss_pred ccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCCh
Q 001162 727 TSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDA 778 (1134)
Q Consensus 727 ~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~ 778 (1134)
+| |.. .+.|++|+.++..+.|.. .+ +++.....++..+.|-.+
T Consensus 161 rS--RCq-~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 161 RS--RCQ-RLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPG 203 (319)
T ss_pred Hh--hhe-EeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHH
Confidence 99 765 889999999888877754 22 344444556666666433
No 387
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.50 E-value=6.8e-07 Score=107.77 Aligned_cols=199 Identities=15% Similarity=0.156 Sum_probs=117.1
Q ss_pred ccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccc
Q 001162 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1134)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~ 634 (1134)
.+.|....+..+.+.+..+.. ...+++|+|++||||+++|+++....... ..+++.++|..+..
T Consensus 140 ~lig~s~~~~~l~~~i~~~a~-------------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~---~~~~v~v~c~~~~~ 203 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIAP-------------SDITVLLLGESGTGKEVLARALHQLSDRK---DKRFVAINCAAIPE 203 (445)
T ss_pred ceeecCHHHHHHHHHHHHHhC-------------CCCCEEEECCCCcCHHHHHHHHHHhCCcC---CCCeEEEECCCCCh
Confidence 456666777777776654332 12569999999999999999999865322 25688999998743
Q ss_pred cchhhHHHHHHHHHHH---------------HhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc-
Q 001162 635 EKGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG- 698 (1134)
Q Consensus 635 ~~~~~~~~~l~~~f~~---------------a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~- 698 (1134)
... .. .+|.. ......+.|||||++.|. . .+...|.+.++.-.
T Consensus 204 ~~~---~~---~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~-----------~----~~q~~l~~~l~~~~~ 262 (445)
T TIGR02915 204 NLL---ES---ELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLP-----------L----NLQAKLLRFLQERVI 262 (445)
T ss_pred HHH---HH---HhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCC-----------H----HHHHHHHHHHhhCeE
Confidence 211 11 11211 111335799999999984 2 23333334433211
Q ss_pred -cccccccCCCcEEEEEecCCC-------CCCChhhccCCCcc-ccccCCCCCH--HHHHHHHHHHhhh----cc---cC
Q 001162 699 -EKRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR----RS---LE 760 (1134)
Q Consensus 699 -~~~~~~~~~~~V~vIattn~~-------~~Ld~aL~~~gRF~-~~i~l~~P~~--eeR~~IL~~~l~~----~~---l~ 760 (1134)
..+.......++.+|++++.. ..+.+.|.. |+. ..|++|+... ++...+++.++.. .+ ..
T Consensus 263 ~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~ 340 (445)
T TIGR02915 263 ERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKG 340 (445)
T ss_pred EeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--HhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCC
Confidence 000000111257888888753 233444433 332 3445555432 3333455544432 12 35
Q ss_pred CCHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 001162 761 CSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1134)
Q Consensus 761 ~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a 792 (1134)
++++.+..+..+..-.+.++|++++++|+..+
T Consensus 341 ~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 341 FTDDALRALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred CCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 78999999998887678999999999988544
No 388
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=1.1e-06 Score=100.96 Aligned_cols=138 Identities=19% Similarity=0.268 Sum_probs=90.6
Q ss_pred CCCceEEEEcCCCccHHHHHHHHHHHhccCCce-------------------eeEEEEEeccccc---------------
Q 001162 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-------------------VAHIVFVCCSRLS--------------- 633 (1134)
Q Consensus 588 ~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~-------------------~~~~~~v~~s~l~--------------- 633 (1134)
..|..+||+||+|+||+++|+++|+.+...... .-.+.++......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 445679999999999999999999998643210 0112223221100
Q ss_pred ---ccc-----hhhHHHHHHHHHHHHh----hcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc
Q 001162 634 ---LEK-----GPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR 701 (1134)
Q Consensus 634 ---~~~-----~~~~~~~l~~~f~~a~----~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~ 701 (1134)
+.. ..-.-..++++.+.+. ...-.|++||++|.+.. .-.+.|+..+++-..
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLEEPp~-- 161 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV---------------AAANALLKTLEEPPP-- 161 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH---------------HHHHHHHHHhcCCCc--
Confidence 000 0001123444444332 22345999999999852 445666666776432
Q ss_pred ccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHH
Q 001162 702 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEH 752 (1134)
Q Consensus 702 ~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~ 752 (1134)
++++|.+|++++.+.|.++| |.. .+.|++|+.++..+.|..
T Consensus 162 -------~t~fiL~t~~~~~LLpTI~S--Rcq-~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 162 -------GTVFLLVSARIDRLLPTILS--RCR-QFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred -------CcEEEEEECChhhCcHHHHh--cCE-EEEecCCCHHHHHHHHHH
Confidence 47889999999999999999 774 899999999999888865
No 389
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.49 E-value=1.9e-06 Score=92.50 Aligned_cols=171 Identities=14% Similarity=0.199 Sum_probs=115.4
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc-C--C------------
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-S--L------------ 904 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~-~--~------------ 904 (1134)
+..++.+.+.++....+..... . .--.|++||||+|+||.|.+.++-+++ | .
T Consensus 9 pksl~~l~~~~e~~~~Lksl~~-~------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~t 75 (351)
T KOG2035|consen 9 PKSLDELIYHEELANLLKSLSS-T------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTT 75 (351)
T ss_pred cchhhhcccHHHHHHHHHHhcc-c------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEec
Confidence 3456667777777777766544 1 111389999999999999999998877 2 1
Q ss_pred --------------cEEEEeCcccchhccccc-HHHHHHHHHHhhhcC---------CeEEEEcCcccccCCCCCCCCcc
Q 001162 905 --------------RFISVKGPELLNKYIGAS-EQAVRDIFSKATAAA---------PCLLFFDEFDSIAPKRGHDNTGV 960 (1134)
Q Consensus 905 --------------~~i~i~~~el~~~~~G~s-e~~v~~lf~~A~~~~---------P~VLfiDEid~l~~~r~~~~~~~ 960 (1134)
..+++++++ .|.- .--+.++++...+.. ..|++|-|+|.|
T Consensus 76 pS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L----------- 139 (351)
T KOG2035|consen 76 PSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL----------- 139 (351)
T ss_pred CCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-----------
Confidence 112333333 2322 234566666543322 369999999998
Q ss_pred hhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCc-ccHHHH
Q 001162 961 TDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADD-VDLEAI 1039 (1134)
Q Consensus 961 ~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~-vd~~~L 1039 (1134)
+..+...|-..|+.+... +-+|..+|....+-+++++ |+ ..|.+|.|+.++...++...+++.++.-. .-+..+
T Consensus 140 T~dAQ~aLRRTMEkYs~~--~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rI 214 (351)
T KOG2035|consen 140 TRDAQHALRRTMEKYSSN--CRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRI 214 (351)
T ss_pred hHHHHHHHHHHHHHHhcC--ceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHH
Confidence 566777888888755544 4444466877888889998 44 45789999999999999999988776532 224445
Q ss_pred HHhcc
Q 001162 1040 AHMTE 1044 (1134)
Q Consensus 1040 a~~t~ 1044 (1134)
|+.++
T Consensus 215 a~kS~ 219 (351)
T KOG2035|consen 215 AEKSN 219 (351)
T ss_pred HHHhc
Confidence 55443
No 390
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.48 E-value=5.2e-07 Score=98.07 Aligned_cols=185 Identities=21% Similarity=0.268 Sum_probs=96.7
Q ss_pred ccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccc-c-
Q 001162 557 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS-L- 634 (1134)
Q Consensus 557 ~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~-~- 634 (1134)
.|++..++.|.+.+.. .+...++|+||.|+|||+|++.+.+.+..... ..+++++.... .
T Consensus 2 ~gR~~el~~l~~~l~~---------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~---~~~y~~~~~~~~~~ 63 (234)
T PF01637_consen 2 FGREKELEKLKELLES---------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGY---KVVYIDFLEESNES 63 (234)
T ss_dssp -S-HHHHHHHHHCHHH-----------------SSEEEEEESTTSSHHHHHHHHHHHCT--EE---CCCHHCCTTBSHHH
T ss_pred CCHHHHHHHHHHHHHh---------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC---cEEEEecccchhhh
Confidence 3566666666654422 12366999999999999999999998742211 12222211100 0
Q ss_pred ---------------------------------cchhhHHHHHHHHHHHHhhc-CCeEEEEcccchhc-cCCCCCCCCCC
Q 001162 635 ---------------------------------EKGPIIRQALSNFISEALDH-APSIVIFDNLDSII-SSSSDPEGSQP 679 (1134)
Q Consensus 635 ---------------------------------~~~~~~~~~l~~~f~~a~~~-~PsIL~IDEiD~L~-~~~~~~~~~~~ 679 (1134)
.........+..++...... ...||+|||++.+. +..
T Consensus 64 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~-------- 135 (234)
T PF01637_consen 64 SLRSFIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE-------- 135 (234)
T ss_dssp HHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT--------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc--------
Confidence 00112233344555554433 34799999999996 211
Q ss_pred chhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCC------ChhhccCCCccccccCCCCCHHHHHHHHHHH
Q 001162 680 STSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI------PQSLTSSGRFDFHVQLPAPAASERKAILEHE 753 (1134)
Q Consensus 680 ~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L------d~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~ 753 (1134)
....+...|...++...... ++.+|.++...... ...+. +|+.. +.+++.+.++..+++...
T Consensus 136 --~~~~~~~~l~~~~~~~~~~~-------~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~ 203 (234)
T PF01637_consen 136 --EDKDFLKSLRSLLDSLLSQQ-------NVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKEL 203 (234)
T ss_dssp --TTHHHHHHHHHHHHH----T-------TEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHH
T ss_pred --chHHHHHHHHHHHhhccccC-------CceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHH
Confidence 11255666666666533221 24444444332111 11222 26765 999999999999999998
Q ss_pred hhhcccCC--CHHHHHHHhhhcCCCChhhH
Q 001162 754 IQRRSLEC--SDEILLDVASKCDGYDAYDL 781 (1134)
Q Consensus 754 l~~~~l~~--~~~~l~~la~~teG~s~~DL 781 (1134)
+... ..+ ++..+..+...+.|+ |+.|
T Consensus 204 ~~~~-~~~~~~~~~~~~i~~~~gG~-P~~l 231 (234)
T PF01637_consen 204 FKEL-IKLPFSDEDIEEIYSLTGGN-PRYL 231 (234)
T ss_dssp HHCC-------HHHHHHHHHHHTT--HHHH
T ss_pred HHHh-hcccCCHHHHHHHHHHhCCC-HHHH
Confidence 7765 544 888899999999995 4444
No 391
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.46 E-value=2.2e-06 Score=104.15 Aligned_cols=201 Identities=14% Similarity=0.119 Sum_probs=124.1
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccc
Q 001162 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (1134)
Q Consensus 553 ~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l 632 (1134)
+.++.|....+.++.+.+..+... ...+||+|++|||||++|+++...... ...+++.++|..+
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~~~-------------~~~vli~Ge~GtGK~~lA~~ih~~s~~---~~~~~i~i~c~~~ 200 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLSRS-------------SISVLINGESGTGKELVAHALHRHSPR---AKAPFIALNMAAI 200 (469)
T ss_pred cccceecCHHHHHHHHHHHHHhcc-------------CCeEEEEeCCCCcHHHHHHHHHhcCCC---CCCCeEeeeCCCC
Confidence 345677777888887777554322 256999999999999999999986432 2267899999887
Q ss_pred cccchhhHHHHHHHHHHHH---------------hhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q 001162 633 SLEKGPIIRQALSNFISEA---------------LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1134)
Q Consensus 633 ~~~~~~~~~~~l~~~f~~a---------------~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~ 697 (1134)
..... . ..+|... ....++.|||||+|.|.. .+...|.+.++.-
T Consensus 201 ~~~~~---~---~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~---------------~~q~~L~~~l~~~ 259 (469)
T PRK10923 201 PKDLI---E---SELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL---------------DVQTRLLRVLADG 259 (469)
T ss_pred CHHHH---H---HHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCH---------------HHHHHHHHHHhcC
Confidence 43211 1 1122211 112356899999999841 2333444444321
Q ss_pred c--cccccccCCCcEEEEEecCCC-------CCCChhhccCCCc-cccccCCCCCH--HHHHHHHHHHhhh----cc---
Q 001162 698 G--EKRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRF-DFHVQLPAPAA--SERKAILEHEIQR----RS--- 758 (1134)
Q Consensus 698 ~--~~~~~~~~~~~V~vIattn~~-------~~Ld~aL~~~gRF-~~~i~l~~P~~--eeR~~IL~~~l~~----~~--- 758 (1134)
. ..........++.+|++++.. ..+.+.|.. || ...|.+|+... ++...++..++.. .+
T Consensus 260 ~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~ 337 (469)
T PRK10923 260 QFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEA 337 (469)
T ss_pred cEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCC
Confidence 1 100000011247888888752 134455554 55 34556666543 4555666666542 12
Q ss_pred cCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 001162 759 LECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1134)
Q Consensus 759 l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a 792 (1134)
..++++.+..+..+..-.+.++|++++++++..+
T Consensus 338 ~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 338 KLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred CCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 2478899999999887778999999999988644
No 392
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.45 E-value=3.2e-06 Score=91.01 Aligned_cols=104 Identities=16% Similarity=0.191 Sum_probs=73.1
Q ss_pred CCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCC-------------CCC
Q 001162 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS-------------LEK 721 (1134)
Q Consensus 655 ~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~-------------~~~ 721 (1134)
-|+||||||++.|- ..-+.+|...++.-.. + ++|+++|+ |.-
T Consensus 296 vPGVLFIDEVhMLD---------------iEcFTyL~kalES~ia---------P-ivifAsNrG~~~irGt~d~~sPhG 350 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLD---------------IECFTYLHKALESPIA---------P-IVIFASNRGMCTIRGTEDILSPHG 350 (456)
T ss_pred cCcceEeeehhhhh---------------hHHHHHHHHHhcCCCC---------c-eEEEecCCcceeecCCcCCCCCCC
Confidence 48899999999873 1445566665553221 3 45555553 445
Q ss_pred CChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHH
Q 001162 722 IPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVD 786 (1134)
Q Consensus 722 Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~ 786 (1134)
+++.|.. |+- +|...+++.++..+|++...+..++.++++.+..++......+-+...+|+.
T Consensus 351 ip~dllD--Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~ 412 (456)
T KOG1942|consen 351 IPPDLLD--RLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLT 412 (456)
T ss_pred CCHHHhh--hee-EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcC
Confidence 6777777 654 6777888999999999999998899999999998887665555554444444
No 393
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.45 E-value=2.4e-06 Score=92.36 Aligned_cols=131 Identities=18% Similarity=0.217 Sum_probs=94.1
Q ss_pred CCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCC------------CCCC
Q 001162 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS------------LEKI 722 (1134)
Q Consensus 655 ~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~------------~~~L 722 (1134)
-|+||||||+|.|- ..-+.+|.+.++.-.. ++++++ ||+ |+-+
T Consensus 288 vpGVLFIDEvHMLD---------------IEcFsFlNrAlE~d~~---------Piiima-TNrgit~iRGTn~~SphGi 342 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLD---------------IECFSFLNRALENDMA---------PIIIMA-TNRGITRIRGTNYRSPHGI 342 (454)
T ss_pred ccceEEEeeehhhh---------------hHHHHHHHHHhhhccC---------cEEEEE-cCCceEEeecCCCCCCCCC
Confidence 38899999999873 1335566665554211 344444 442 5557
Q ss_pred ChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcccccCCCc
Q 001162 723 PQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSS 802 (1134)
Q Consensus 723 d~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~ 802 (1134)
|-.|.. |.- .|.-.+++.++..+||+..+....+.++++++..+.......+-+..-.|+..+...+..|.
T Consensus 343 P~D~lD--R~l-II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk------ 413 (454)
T KOG2680|consen 343 PIDLLD--RML-IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRK------ 413 (454)
T ss_pred cHHHhh--hhh-eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc------
Confidence 777776 654 77888999999999999999999999999999988888777777777788887777777662
Q ss_pred cccccccccchhhhHhhhhccc
Q 001162 803 FEKHIKPTLVRDDFSQAMHEFL 824 (1134)
Q Consensus 803 ~~~~~~~~lt~eDf~~Al~~~~ 824 (1134)
...+..+|+..+..-|.
T Consensus 414 -----~~~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 414 -----GKVVEVDDIERVYRLFL 430 (454)
T ss_pred -----CceeehhHHHHHHHHHh
Confidence 24566677777765543
No 394
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.44 E-value=9.6e-07 Score=103.79 Aligned_cols=190 Identities=23% Similarity=0.331 Sum_probs=113.2
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchh-
Q 001162 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK- 917 (1134)
Q Consensus 842 ~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~- 917 (1134)
...+++|....-+.+.+.+.... .....+|++|++||||..+|++|.+.. +.|||.+||..+-..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA-----------~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVA-----------PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 34567777777777776665321 233579999999999999999999877 469999999765321
Q ss_pred ------------cccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccc--ccc-----
Q 001162 918 ------------YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV--EVL----- 978 (1134)
Q Consensus 918 ------------~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~--~~~----- 978 (1134)
|.|...+. ...|+.|.++ .||||||..+ .-.+...||..|..- +..
T Consensus 208 ~ESELFGhekGAFTGA~~~r-~G~fE~A~GG---TLfLDEI~~m-----------pl~~Q~kLLRvLqe~~~~rvG~~~~ 272 (464)
T COG2204 208 LESELFGHEKGAFTGAITRR-IGRFEQANGG---TLFLDEIGEM-----------PLELQVKLLRVLQEREFERVGGNKP 272 (464)
T ss_pred HHHHhhcccccCcCCccccc-CcceeEcCCc---eEEeeccccC-----------CHHHHHHHHHHHHcCeeEecCCCcc
Confidence 22222221 2467777776 9999999988 345666677666421 111
Q ss_pred --ccEEEEEecCCCCccchhhcCcCcccc-------eeecCCCCHHHHH----HHHHHHH----ccCCCC-CcccHHHHH
Q 001162 979 --TGVFVFAATSRPDLLDAALLRPGRLDR-------LLFCDFPSPRERL----DILKVIS----RKLPLA-DDVDLEAIA 1040 (1134)
Q Consensus 979 --~~v~vIatTn~p~~ld~allrpgRfd~-------~i~~~~p~~~er~----~Il~~~~----~~~~~~-~~vd~~~La 1040 (1134)
-.|-||+|||+. +...+ ..|||-. ++.+..|...+|. .+++.++ +..+.. ..++-+.++
T Consensus 273 i~vdvRiIaaT~~d--L~~~v-~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~ 349 (464)
T COG2204 273 IKVDVRIIAATNRD--LEEEV-AAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALA 349 (464)
T ss_pred cceeeEEEeecCcC--HHHHH-HcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 148899999973 21111 2244432 4455566655554 3333333 333322 445555555
Q ss_pred Hhcc-CCcH--HHHHHHHHHHHH
Q 001162 1041 HMTE-GFSG--ADLQALLSDAQL 1060 (1134)
Q Consensus 1041 ~~t~-g~sg--~dl~~l~~~A~~ 1060 (1134)
.... .+.| ++|++++..++.
T Consensus 350 ~L~~y~WPGNVREL~N~ver~~i 372 (464)
T COG2204 350 ALLAYDWPGNVRELENVVERAVI 372 (464)
T ss_pred HHHhCCCChHHHHHHHHHHHHHh
Confidence 5432 2333 555555554443
No 395
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.44 E-value=1.8e-06 Score=106.51 Aligned_cols=49 Identities=27% Similarity=0.353 Sum_probs=41.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcC
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS 903 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~ 903 (1134)
+..|+++.|++++++.|...+... .+++|+||||||||++|+++++.+.
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~---------------~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQR---------------RHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhC---------------CeEEEECCCCCcHHHHHHHHHHHcC
Confidence 468999999999999888766531 3799999999999999999998774
No 396
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.42 E-value=1.8e-06 Score=98.55 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=48.4
Q ss_pred CCC-CCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC-------cEEEEeC
Q 001162 842 GWD-DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL-------RFISVKG 911 (1134)
Q Consensus 842 ~~~-~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~-------~~i~i~~ 911 (1134)
-|+ ++.|+++++..+.+.+..... .. -..+..++|+||||||||++|++||+.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~------g~-~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQ------GL-EERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHh------cC-CCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 455 899999999988887664321 11 123456899999999999999999999965 8888876
No 397
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2.3e-07 Score=107.35 Aligned_cols=47 Identities=30% Similarity=0.469 Sum_probs=39.6
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~ 902 (1134)
..|.||.|++..|+.+...... ..|+||+||||||||++|+.+...+
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAAG---------------gHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAAG---------------GHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHhc---------------CCcEEEecCCCCchHHhhhhhcccC
Confidence 4788999999999999776542 2489999999999999999887654
No 398
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=1.1e-06 Score=100.86 Aligned_cols=131 Identities=22% Similarity=0.227 Sum_probs=92.7
Q ss_pred CCCCceEEEcCCCCchhHHHHHHHHHcCC-------------------------cEEEEeCcccchhccc-----ccHHH
Q 001162 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSL-------------------------RFISVKGPELLNKYIG-----ASEQA 925 (1134)
Q Consensus 876 ~~~~~vLL~GppGtGKT~lA~alA~~~~~-------------------------~~i~i~~~el~~~~~G-----~se~~ 925 (1134)
+.+..+||+||+|+|||++|+.+|+.+.. .|+.+.+..-. ...| -.-+.
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 45567999999999999999999987631 24444431100 0011 13466
Q ss_pred HHHHHHHhhh----cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcC
Q 001162 926 VRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPG 1001 (1134)
Q Consensus 926 v~~lf~~A~~----~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpg 1001 (1134)
+|++.+.+.. +...|++||+++.+ .....+.+++.|+... .++.+|.+|+.++.+.+.+.+
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~L-----------d~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S-- 162 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESM-----------NLQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS-- 162 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhC-----------CHHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH--
Confidence 7887776642 44569999999998 4567888888887543 446666689999999999998
Q ss_pred cccceeecCCCCHHHHHHHHHH
Q 001162 1002 RLDRLLFCDFPSPRERLDILKV 1023 (1134)
Q Consensus 1002 Rfd~~i~~~~p~~~er~~Il~~ 1023 (1134)
|+ ..+.|++|+.++....|+.
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 55 4668899999888777753
No 399
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.40 E-value=1.5e-05 Score=91.75 Aligned_cols=231 Identities=19% Similarity=0.178 Sum_probs=137.8
Q ss_pred CCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc----C-CcEEEEeCcccc----
Q 001162 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----S-LRFISVKGPELL---- 915 (1134)
Q Consensus 845 ~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~----~-~~~i~i~~~el~---- 915 (1134)
.+.|-+.-...+++++..++. ...++.+.+.|-||||||.+...+-... . ...++++|-.+.
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle---------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLE---------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CccchHHHHHHHHHHHHhhhh---------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 456666666677776655432 2345678999999999999887665433 2 245888887542
Q ss_pred ------hhc-----ccccHHHHHHHHHHh-h-hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEE
Q 001162 916 ------NKY-----IGASEQAVRDIFSKA-T-AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVF 982 (1134)
Q Consensus 916 ------~~~-----~G~se~~v~~lf~~A-~-~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~ 982 (1134)
+.+ .+.++......|+.- . ...+-|+++||+|.|..+.. +++.++. +++. ....+++
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~--------~vLy~lF-ewp~-lp~sr~i 291 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ--------TVLYTLF-EWPK-LPNSRII 291 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc--------ceeeeeh-hccc-CCcceee
Confidence 111 122334444555543 2 22467999999999974421 1222221 2222 2456788
Q ss_pred EEEecCCCCccchhhcC----cCcccceeecCCCCHHHHHHHHHHHHccCCCCCc--ccHHHHHHhccCCcHHHHHHH--
Q 001162 983 VFAATSRPDLLDAALLR----PGRLDRLLFCDFPSPRERLDILKVISRKLPLADD--VDLEAIAHMTEGFSGADLQAL-- 1054 (1134)
Q Consensus 983 vIatTn~p~~ld~allr----pgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~--vd~~~La~~t~g~sg~dl~~l-- 1054 (1134)
+||..|..|+-|-.|-| .+--.+.+.|++|+.++..+|++..+........ ..++-.|+...|.|| |++.+
T Consensus 292 LiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRkaLd 370 (529)
T KOG2227|consen 292 LIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKALD 370 (529)
T ss_pred eeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHHHH
Confidence 88999988886655443 2334578999999999999999999887765432 346666777776664 66543
Q ss_pred -HHHHHHHHHHHHHhccCCC-----CCCCcccccHHHHHHHHhhcCC
Q 001162 1055 -LSDAQLSAVHEILNNIDSN-----EPGKMPVITDALLKSIASKARP 1095 (1134)
Q Consensus 1055 -~~~A~~~a~~~~~~~~~~~-----~~~~~~~it~e~l~~al~~~~p 1095 (1134)
|+.|...|=.+........ .+.....|-.+|+..++..+--
T Consensus 371 v~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~ 417 (529)
T KOG2227|consen 371 VCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDG 417 (529)
T ss_pred HHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhcc
Confidence 4443333322221111110 1112234557888877766543
No 400
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=2.9e-06 Score=97.34 Aligned_cols=134 Identities=19% Similarity=0.255 Sum_probs=87.8
Q ss_pred CCCceEEEEcCCCccHHHHHHHHHHHhccCCc-------------------eeeEEEEEecccc---cc-----cchhhH
Q 001162 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD-------------------LVAHIVFVCCSRL---SL-----EKGPII 640 (1134)
Q Consensus 588 ~~p~~vLL~GppGtGKTtLaralA~~l~~~~~-------------------~~~~~~~v~~s~l---~~-----~~~~~~ 640 (1134)
..|..+||+||+|+|||++|+.+|+.+..... ..-.+.+++...- .+ -..+.
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~- 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDA- 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHH-
Confidence 34566999999999999999999999853211 0123445544221 11 12233
Q ss_pred HHHHHHHHHHHh----hcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEec
Q 001162 641 RQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASA 716 (1134)
Q Consensus 641 ~~~l~~~f~~a~----~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIatt 716 (1134)
++++.+.+. .....|+++|+++.+-. ...+.++..+++... .+.+|.+|
T Consensus 98 ---iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~---------------~a~naLLk~LEep~~---------~~~~Ilvt 150 (325)
T PRK08699 98 ---VREIIDNVYLTSVRGGLRVILIHPAESMNL---------------QAANSLLKVLEEPPP---------QVVFLLVS 150 (325)
T ss_pred ---HHHHHHHHhhCcccCCceEEEEechhhCCH---------------HHHHHHHHHHHhCcC---------CCEEEEEe
Confidence 444444433 23345999999998841 345556666666532 25677788
Q ss_pred CCCCCCChhhccCCCccccccCCCCCHHHHHHHHHH
Q 001162 717 QSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEH 752 (1134)
Q Consensus 717 n~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~ 752 (1134)
+.++.+.+.+++ |.. .+.|++|+.++..+.|..
T Consensus 151 h~~~~ll~ti~S--Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 151 HAADKVLPTIKS--RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred CChHhChHHHHH--Hhh-hhcCCCCCHHHHHHHHHh
Confidence 888899999988 654 889999999988877754
No 401
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.40 E-value=1.4e-05 Score=86.63 Aligned_cols=64 Identities=22% Similarity=0.373 Sum_probs=46.1
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcC--CcEEEEeCcccc
Q 001162 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPELL 915 (1134)
Q Consensus 844 ~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~--~~~i~i~~~el~ 915 (1134)
+-++|+-.++++.--.+.. -+.|.-..+.+|+.|+||||||.+|-.+|+.+| .+|..+.+++++
T Consensus 40 ~GmVGQ~~AR~Aagvi~km--------i~egkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~ 105 (454)
T KOG2680|consen 40 EGMVGQVKARKAAGVILKM--------IREGKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIY 105 (454)
T ss_pred ccchhhHHHHHHhHHHHHH--------HHcCcccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceee
Confidence 3467777777765444432 122333456899999999999999999999997 478777777664
No 402
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.40 E-value=2.2e-06 Score=102.89 Aligned_cols=143 Identities=21% Similarity=0.290 Sum_probs=88.0
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcC----CcEEEE------eC
Q 001162 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS----LRFISV------KG 911 (1134)
Q Consensus 842 ~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~----~~~i~i------~~ 911 (1134)
.+.++.|...+++.+.-.. ....+++|+||||||||++++.++..+. ...+++ .+
T Consensus 189 d~~~v~Gq~~~~~al~laa---------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEITA---------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred CeEEEECcHHHHhhhheec---------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 4555666666655542211 2345799999999999999999997652 111111 11
Q ss_pred c-----c-----cch--------hcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcc
Q 001162 912 P-----E-----LLN--------KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELD 973 (1134)
Q Consensus 912 ~-----e-----l~~--------~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld 973 (1134)
. . |.+ ..+|.....-...+..|.++ +||+||++.+ ...+...|+..|+
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~-----------~~~~~~~L~~~LE 319 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEF-----------ERRTLDALREPIE 319 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhC-----------CHHHHHHHHHHHH
Confidence 0 0 100 01221111122456666665 9999999876 4466777777664
Q ss_pred ccc-----------ccccEEEEEecCCCC---------------------ccchhhcCcCcccceeecCCCCHH
Q 001162 974 GVE-----------VLTGVFVFAATSRPD---------------------LLDAALLRPGRLDRLLFCDFPSPR 1015 (1134)
Q Consensus 974 ~~~-----------~~~~v~vIatTn~p~---------------------~ld~allrpgRfd~~i~~~~p~~~ 1015 (1134)
.-. ...++.+|+|+|... .+..+++. |||-.+.++.|+.+
T Consensus 320 ~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 320 SGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred cCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 311 123588999998742 36678888 99999999988644
No 403
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.39 E-value=1.7e-06 Score=105.69 Aligned_cols=192 Identities=25% Similarity=0.261 Sum_probs=109.2
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchh--
Q 001162 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK-- 917 (1134)
Q Consensus 843 ~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~-- 917 (1134)
..+++|.....+.+.+.+.... ....++||+|++||||+++|+++.... +.+|+.++|..+-..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a-----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA-----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 4456777766666666655321 224579999999999999999999875 479999999876321
Q ss_pred ---cccccH-------HHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc--c-------c
Q 001162 918 ---YIGASE-------QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V-------L 978 (1134)
Q Consensus 918 ---~~G~se-------~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~--~-------~ 978 (1134)
..|... ......|+.|.++ .|||||||.|. ..+...|+..++.-. . .
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~gG---tL~ldeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 320 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELADGG---TLFLDEIGELP-----------LALQAKLLRVLQYGEIQRVGSDRSLR 320 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcCCC---EEEecChhhCC-----------HHHHHHHHHHHhcCCEeeCCCCccee
Confidence 112110 0011245555544 89999999983 345556666554211 1 1
Q ss_pred ccEEEEEecCCCCc-------cchhhcCcCcccceeecCCCCHHHH----HHHHHHHHc----cCCC-CCcccHH---HH
Q 001162 979 TGVFVFAATSRPDL-------LDAALLRPGRLDRLLFCDFPSPRER----LDILKVISR----KLPL-ADDVDLE---AI 1039 (1134)
Q Consensus 979 ~~v~vIatTn~p~~-------ld~allrpgRfd~~i~~~~p~~~er----~~Il~~~~~----~~~~-~~~vd~~---~L 1039 (1134)
..+-||++|++.-. +.+.|.. |+. .+.+..|...+| ..+++.+++ +.+. ...++.+ .|
T Consensus 321 ~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L 397 (509)
T PRK05022 321 VDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAAL 397 (509)
T ss_pred cceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 24778888876421 2233332 332 233445554444 334444433 2221 1233433 34
Q ss_pred HHhccCCcHHHHHHHHHHHHHHH
Q 001162 1040 AHMTEGFSGADLQALLSDAQLSA 1062 (1134)
Q Consensus 1040 a~~t~g~sg~dl~~l~~~A~~~a 1062 (1134)
..+.---+-++|++++..|+..+
T Consensus 398 ~~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 398 LAYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred HhCCCCCcHHHHHHHHHHHHHhc
Confidence 43332234588888888776654
No 404
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.39 E-value=6.2e-06 Score=94.27 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=42.5
Q ss_pred ccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhcc
Q 001162 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEH 616 (1134)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~ 616 (1134)
++.|+++.++++++.+...... . ....+.++|+|||||||||+|++|++.++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g--------~-~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQG--------L-EERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhc--------C-CCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7899999999999988664421 1 123455899999999999999999999864
No 405
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.38 E-value=4e-06 Score=106.30 Aligned_cols=194 Identities=24% Similarity=0.332 Sum_probs=111.2
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchh
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK 917 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~ 917 (1134)
..++++.|.....+.+.+.+.... ....++||+|++|||||++|+++.... +.+|+.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a-----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA-----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 356678888777777766665321 223579999999999999999998865 579999999875321
Q ss_pred -----ccc--------ccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc--c-----
Q 001162 918 -----YIG--------ASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V----- 977 (1134)
Q Consensus 918 -----~~G--------~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~--~----- 977 (1134)
..| .... ....|+.|.+ .+||||||+.+. ..+...|+..|+.-. .
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~-~~g~le~a~~---GtL~Ldei~~L~-----------~~~Q~~L~~~l~~~~~~~~g~~~ 506 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQ-RIGRFELADK---SSLFLDEVGDMP-----------LELQPKLLRVLQEQEFERLGSNK 506 (686)
T ss_pred HhhhhhcCcccccccccccc-hhhHHHhcCC---CeEEEechhhCC-----------HHHHHHHHHHHHhCCEEeCCCCC
Confidence 112 1111 1234555554 499999999983 345556666654211 1
Q ss_pred --cccEEEEEecCCCC--ccchhhcCcC---cccceeecCCCCHHHHHH----HHHHHHcc----CCCC-Cccc---HHH
Q 001162 978 --LTGVFVFAATSRPD--LLDAALLRPG---RLDRLLFCDFPSPRERLD----ILKVISRK----LPLA-DDVD---LEA 1038 (1134)
Q Consensus 978 --~~~v~vIatTn~p~--~ld~allrpg---Rfd~~i~~~~p~~~er~~----Il~~~~~~----~~~~-~~vd---~~~ 1038 (1134)
..++-+|++|+..- .+....+++. |+. .+.+..|...+|.+ +++.++++ .+.. ..+. +..
T Consensus 507 ~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~ 585 (686)
T PRK15429 507 IIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRT 585 (686)
T ss_pred cccceEEEEEeCCCCHHHHHHcCcccHHHHhccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 13477888887642 1222222211 222 23455565555543 44444332 2221 1233 344
Q ss_pred HHHhccCCcHHHHHHHHHHHHHH
Q 001162 1039 IAHMTEGFSGADLQALLSDAQLS 1061 (1134)
Q Consensus 1039 La~~t~g~sg~dl~~l~~~A~~~ 1061 (1134)
|..+.---+-++|++++..|...
T Consensus 586 L~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 586 LSNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHh
Confidence 44433223347888887777654
No 406
>PRK15115 response regulator GlrR; Provisional
Probab=98.38 E-value=5.9e-06 Score=99.62 Aligned_cols=222 Identities=21% Similarity=0.284 Sum_probs=115.6
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhcc-----cccH-------HHHHHHHHHhhhcCCeEEEE
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYI-----GASE-------QAVRDIFSKATAAAPCLLFF 943 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~~-----G~se-------~~v~~lf~~A~~~~P~VLfi 943 (1134)
..++++|++|||||++|+++.... +.+|+.++|..+-.... |... .....+|+.|. ...|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAE---GGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECC---CCEEEE
Confidence 469999999999999999999876 47999999987632211 1100 00011233333 349999
Q ss_pred cCcccccCCCCCCCCcchhhHHHhHhhhccccc--c-------cccEEEEEecCCCCccchhhcCcCcccc-------ee
Q 001162 944 DEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V-------LTGVFVFAATSRPDLLDAALLRPGRLDR-------LL 1007 (1134)
Q Consensus 944 DEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~--~-------~~~v~vIatTn~p~~ld~allrpgRfd~-------~i 1007 (1134)
||+|.|. ......|+..|+.-. . ..++.+|+||+.. +...+.+ |+|.. .+
T Consensus 235 ~~i~~l~-----------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~~-~~f~~~l~~~l~~~ 300 (444)
T PRK15115 235 DEIGDMP-----------APLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMAR-GEFREDLYYRLNVV 300 (444)
T ss_pred EccccCC-----------HHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHHc-CCccHHHHHhhcee
Confidence 9999984 345556665554211 0 1257888888863 4333333 55532 23
Q ss_pred ecCCCCHHHHHH----HHHHHHccC----CC-CCccc---HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 001162 1008 FCDFPSPRERLD----ILKVISRKL----PL-ADDVD---LEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEP 1075 (1134)
Q Consensus 1008 ~~~~p~~~er~~----Il~~~~~~~----~~-~~~vd---~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 1075 (1134)
.+..|...+|.+ +++.++++. +. ...++ +..|..+.-.-+.+++++++..|...+
T Consensus 301 ~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~------------- 367 (444)
T PRK15115 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT------------- 367 (444)
T ss_pred eecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC-------------
Confidence 445566666542 334444322 11 11233 333444332233466666665544321
Q ss_pred CCcccccHHHHHHHHhhc---CCCCcH--HHHHHHHHHHHHhhcccchhhhh-chhcccccccc
Q 001162 1076 GKMPVITDALLKSIASKA---RPSVSE--AEKLRLYSIYGQFLDSKKSVAAQ-SRDAKGKRATL 1133 (1134)
Q Consensus 1076 ~~~~~it~e~l~~al~~~---~ps~~~--~~~~~~~~~~~~f~~~r~~~~~~-~~~~~~~~~~~ 1133 (1134)
....|+.+++...+... .++... ++. .-..|.......+++...+ ...+++ |+||
T Consensus 368 -~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~-E~~~i~~al~~~~gn~~~aA~~Lgis-r~tL 428 (444)
T PRK15115 368 -SSPVISDALVEQALEGENTALPTFVEARNQF-ELNYLRKLLQITKGNVTHAARMAGRN-RTEF 428 (444)
T ss_pred -CCCccChhhhhhhhcccccccccHHHHHHHH-HHHHHHHHHHHhCCCHHHHHHHhCCC-HHHH
Confidence 12357777776544311 111111 222 2234445555545444433 344776 7665
No 407
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=5.7e-06 Score=94.17 Aligned_cols=137 Identities=14% Similarity=0.203 Sum_probs=89.8
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhccCCce-----------------eeEEEEEecccc-cccchhhHHHHHHHHHHH
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-----------------VAHIVFVCCSRL-SLEKGPIIRQALSNFISE 650 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~~~~~~-----------------~~~~~~v~~s~l-~~~~~~~~~~~l~~~f~~ 650 (1134)
.+..+||+||.|+||+++|+++|+.+-..... .-.+..+....- ..-..+.++.....+...
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~ 103 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQES 103 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhC
Confidence 34669999999999999999999987532210 012333332210 111233333322222122
Q ss_pred HhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCC
Q 001162 651 ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSG 730 (1134)
Q Consensus 651 a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~g 730 (1134)
.....-.|++||++|.+.. ...+.|+..+++-.. ++++|..|+.++.+.|.++|
T Consensus 104 ~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLEEPp~---------~t~fiL~t~~~~~lLpTI~S-- 157 (319)
T PRK06090 104 SQLNGYRLFVIEPADAMNE---------------SASNALLKTLEEPAP---------NCLFLLVTHNQKRLLPTIVS-- 157 (319)
T ss_pred cccCCceEEEecchhhhCH---------------HHHHHHHHHhcCCCC---------CeEEEEEECChhhChHHHHh--
Confidence 2223346999999999841 445667777776443 47888888999999999999
Q ss_pred CccccccCCCCCHHHHHHHHHH
Q 001162 731 RFDFHVQLPAPAASERKAILEH 752 (1134)
Q Consensus 731 RF~~~i~l~~P~~eeR~~IL~~ 752 (1134)
|.. .+.|++|+.++..+.|..
T Consensus 158 RCq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 158 RCQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred cce-eEeCCCCCHHHHHHHHHH
Confidence 765 889999999988887754
No 408
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.34 E-value=3.4e-06 Score=102.29 Aligned_cols=200 Identities=14% Similarity=0.122 Sum_probs=121.9
Q ss_pred ccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccc
Q 001162 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1134)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~ 634 (1134)
.+.|....+.++.+.+..+... ...+++.|.+||||+++|+++.+..... ..+++.++|..+..
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~~-------------~~~vli~Ge~GtGK~~~A~~ih~~~~~~---~~~~~~~~c~~~~~ 198 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSRS-------------DITVLINGESGTGKELVARALHRHSPRA---NGPFIALNMAAIPK 198 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhCc-------------CCeEEEECCCCCCHHHHHHHHHHhCCCC---CCCeEEEeCCCCCH
Confidence 4566777777777776553321 2569999999999999999999864322 26788999988743
Q ss_pred cchhhHHHHHHHHHHH---------------HhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc-
Q 001162 635 EKGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG- 698 (1134)
Q Consensus 635 ~~~~~~~~~l~~~f~~---------------a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~- 698 (1134)
... .. .+|.. .....++.|||||++.|. . .+...|.+.++...
T Consensus 199 ~~~---~~---~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~-----------~----~~q~~ll~~l~~~~~ 257 (463)
T TIGR01818 199 DLI---ES---ELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMP-----------L----DAQTRLLRVLADGEF 257 (463)
T ss_pred HHH---HH---HhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCC-----------H----HHHHHHHHHHhcCcE
Confidence 221 11 11110 111235789999999984 1 22333333333211
Q ss_pred -cccccccCCCcEEEEEecCCC-------CCCChhhccCCCcc-ccccCCCCC--HHHHHHHHHHHhhhc----c---cC
Q 001162 699 -EKRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPA--ASERKAILEHEIQRR----S---LE 760 (1134)
Q Consensus 699 -~~~~~~~~~~~V~vIattn~~-------~~Ld~aL~~~gRF~-~~i~l~~P~--~eeR~~IL~~~l~~~----~---l~ 760 (1134)
..+.......++.+|++++.. ..+.+.|.. |+. .+|++|+.. .++...++..++... + ..
T Consensus 258 ~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~ 335 (463)
T TIGR01818 258 YRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKL 335 (463)
T ss_pred EECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCC
Confidence 000000111246788888752 123334443 443 367777776 566777776665432 2 34
Q ss_pred CCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHh
Q 001162 761 CSDEILLDVASKCDGYDAYDLEILVDRTVHAAV 793 (1134)
Q Consensus 761 ~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~ 793 (1134)
++++.+..+..+.--.+.++|++++++++..+.
T Consensus 336 ~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~ 368 (463)
T TIGR01818 336 LDPEALERLKQLRWPGNVRQLENLCRWLTVMAS 368 (463)
T ss_pred cCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 789999999988766678999999999986553
No 409
>PF13173 AAA_14: AAA domain
Probab=98.34 E-value=1.8e-06 Score=85.58 Aligned_cols=120 Identities=22% Similarity=0.286 Sum_probs=71.5
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccC
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1134)
+.++|+||.|+||||+++.+++.+. ....+.++++.+.......... +.+.+.......+.+|||||++.+-
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~-- 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP-- 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc--
Confidence 3489999999999999999998865 1156788888776542211111 2233332222366899999998872
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCC----ChhhccCCCccccccCCCCCHHH
Q 001162 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI----PQSLTSSGRFDFHVQLPAPAASE 745 (1134)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L----d~aL~~~gRF~~~i~l~~P~~ee 745 (1134)
.....+..+.|... ++.+|.|+.....+ ...+. ||.. .+++.|.+..|
T Consensus 75 --------------~~~~~lk~l~d~~~----------~~~ii~tgS~~~~l~~~~~~~l~--gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 --------------DWEDALKFLVDNGP----------NIKIILTGSSSSLLSKDIAESLA--GRVI-EIELYPLSFRE 126 (128)
T ss_pred --------------cHHHHHHHHHHhcc----------CceEEEEccchHHHhhcccccCC--CeEE-EEEECCCCHHH
Confidence 23444444455331 23444444433322 23333 3655 77888888765
No 410
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.33 E-value=7.2e-06 Score=99.24 Aligned_cols=198 Identities=15% Similarity=0.185 Sum_probs=115.6
Q ss_pred ccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccc
Q 001162 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1134)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~ 634 (1134)
.+.|....+.++.+.+..+... ..++|++|++||||+++|+++...... ...+++.++|..+..
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a~~-------------~~~vli~Ge~GtGK~~lA~~ih~~s~~---~~~~~~~i~c~~~~~ 207 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIALS-------------QASVLISGESGTGKELIARAIHYNSRR---AKGPFIKVNCAALPE 207 (457)
T ss_pred ceecccHHHhHHHHHHHHHcCC-------------CcEEEEEcCCCccHHHHHHHHHHhCCC---CCCCeEEEECCCCCH
Confidence 4556666777777766554432 256999999999999999999885432 226789999998753
Q ss_pred cchhhHHHHHHHHHHH---------------HhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHh--
Q 001162 635 EKGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY-- 697 (1134)
Q Consensus 635 ~~~~~~~~~l~~~f~~---------------a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~-- 697 (1134)
... . ..+|.. ......++|||||+|.+.. .+...|...++.-
T Consensus 208 ~~~---~---~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~---------------~~q~~L~~~l~~~~~ 266 (457)
T PRK11361 208 SLL---E---SELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPL---------------VLQAKLLRILQEREF 266 (457)
T ss_pred HHH---H---HHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCH---------------HHHHHHHHHHhcCcE
Confidence 211 1 111211 1112356999999999842 2233344444321
Q ss_pred ccccccccCCCcEEEEEecCCC-------CCCChhhccCCCccccccCCCCCHHHH----HHHHHHHhhhc----c---c
Q 001162 698 GEKRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFDFHVQLPAPAASER----KAILEHEIQRR----S---L 759 (1134)
Q Consensus 698 ~~~~~~~~~~~~V~vIattn~~-------~~Ld~aL~~~gRF~~~i~l~~P~~eeR----~~IL~~~l~~~----~---l 759 (1134)
...........++.+|++++.. ..+.+.|.. |+. .+.+..|...+| ..++..++... + .
T Consensus 267 ~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~-~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~ 343 (457)
T PRK11361 267 ERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RLN-VIHLILPPLRDRREDISLLANHFLQKFSSENQRDII 343 (457)
T ss_pred EeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCC
Confidence 1101101111257889888752 122333332 332 334444444333 33444444321 1 3
Q ss_pred CCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 001162 760 ECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1134)
Q Consensus 760 ~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a 792 (1134)
.++++.+..+..+.--.+.++|++++++++..+
T Consensus 344 ~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 344 DIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred CcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC
Confidence 578999999998887778999999999987543
No 411
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.33 E-value=1e-05 Score=100.20 Aligned_cols=102 Identities=15% Similarity=0.164 Sum_probs=64.3
Q ss_pred cEEEEEecCCC--CCCChhhccCCCcc---ccccCC---CCCHHHHHHHHHHH---hhhc--ccCCCHHHHHHHhhh---
Q 001162 709 PIAFVASAQSL--EKIPQSLTSSGRFD---FHVQLP---APAASERKAILEHE---IQRR--SLECSDEILLDVASK--- 772 (1134)
Q Consensus 709 ~V~vIattn~~--~~Ld~aL~~~gRF~---~~i~l~---~P~~eeR~~IL~~~---l~~~--~l~~~~~~l~~la~~--- 772 (1134)
.+.+|++++.. ..+++.|++ ||+ ..+.|+ +.+.+.|.++++.+ ++.. ...++++.+..+...
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 57899999874 578999999 888 555443 33456666555433 3333 224677776655432
Q ss_pred -cC-----CCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhcc
Q 001162 773 -CD-----GYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1134)
Q Consensus 773 -te-----G~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1134)
.+ -.+.+++..+++.|...|..+ ....++.+|+.+|++..
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~-----------~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSS-----------GKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhc-----------CCceecHHHHHHHHHHH
Confidence 11 124688999999885544322 23568899999887543
No 412
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.2e-05 Score=100.79 Aligned_cols=137 Identities=15% Similarity=0.178 Sum_probs=88.0
Q ss_pred cccccchhhHHHHHHHHHHhcCCCchhhhhhcCC-CCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc-
Q 001162 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHL-PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR- 631 (1134)
Q Consensus 554 ~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~-~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~- 631 (1134)
..+.|.++++..|.+.+...... ++. .+...+||.||.|+|||-||+++|..+-... -.++.+|++.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~g--------l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse---~~~IriDmse~ 630 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAG--------LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSE---ENFIRLDMSEF 630 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcc--------cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCc---cceEEechhhh
Confidence 46788888888888877543311 111 3566799999999999999999999985332 4578888885
Q ss_pred -----cccc---chhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--ccc
Q 001162 632 -----LSLE---KGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKR 701 (1134)
Q Consensus 632 -----l~~~---~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~--~~~ 701 (1134)
+.+. +.+.. ....+.+..+...-+||+|||||..-+ .+++.|+.++|... +..
T Consensus 631 ~evskligsp~gyvG~e--~gg~LteavrrrP~sVVLfdeIEkAh~---------------~v~n~llq~lD~GrltDs~ 693 (898)
T KOG1051|consen 631 QEVSKLIGSPPGYVGKE--EGGQLTEAVKRRPYSVVLFEEIEKAHP---------------DVLNILLQLLDRGRLTDSH 693 (898)
T ss_pred hhhhhccCCCcccccch--hHHHHHHHHhcCCceEEEEechhhcCH---------------HHHHHHHHHHhcCccccCC
Confidence 3222 12221 122333333334447999999998631 45666667776532 222
Q ss_pred ccccCCCcEEEEEecCC
Q 001162 702 KSSCGIGPIAFVASAQS 718 (1134)
Q Consensus 702 ~~~~~~~~V~vIattn~ 718 (1134)
+......+++||+|+|.
T Consensus 694 Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 694 GREVDFKNAIFIMTSNV 710 (898)
T ss_pred CcEeeccceEEEEeccc
Confidence 23344568999999875
No 413
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.32 E-value=6.9e-07 Score=89.76 Aligned_cols=81 Identities=20% Similarity=0.393 Sum_probs=57.0
Q ss_pred cchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccch
Q 001162 558 WMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKG 637 (1134)
Q Consensus 558 G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~ 637 (1134)
|....+.++.+++..+.... .+|||+|++||||+++|++++..... ....++.++|..+.
T Consensus 2 G~S~~~~~l~~~l~~~a~~~-------------~pvli~GE~GtGK~~~A~~lh~~~~~---~~~~~~~~~~~~~~---- 61 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSS-------------SPVLITGEPGTGKSLLARALHRYSGR---ANGPFIVIDCASLP---- 61 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSS-------------S-EEEECCTTSSHHHHHHCCHHTTTT---CCS-CCCCCHHCTC----
T ss_pred CCCHHHHHHHHHHHHHhCCC-------------CcEEEEcCCCCCHHHHHHHHHhhcCc---cCCCeEEechhhCc----
Confidence 56677888888887665432 56999999999999999999996542 22455666777644
Q ss_pred hhHHHHHHHHHHHHhhcCCeEEEEcccchhc
Q 001162 638 PIIRQALSNFISEALDHAPSIVIFDNLDSII 668 (1134)
Q Consensus 638 ~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~ 668 (1134)
.++++.+ .++.|||+|+|.+-
T Consensus 62 -------~~~l~~a---~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 62 -------AELLEQA---KGGTLYLKNIDRLS 82 (138)
T ss_dssp -------HHHHHHC---TTSEEEEECGCCS-
T ss_pred -------HHHHHHc---CCCEEEECChHHCC
Confidence 2344443 66799999999984
No 414
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.30 E-value=3.1e-06 Score=102.04 Aligned_cols=165 Identities=19% Similarity=0.217 Sum_probs=91.2
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhc-----cccc-------HHHHHHHHHHhhhcCCeEEEE
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY-----IGAS-------EQAVRDIFSKATAAAPCLLFF 943 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~-----~G~s-------e~~v~~lf~~A~~~~P~VLfi 943 (1134)
.+++++|++||||+++|+++.... +.+|+.++|..+.... .|.. .......|..|. ..+|||
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~l 239 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAH---GGTLFL 239 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECC---CCEEEE
Confidence 479999999999999999998876 4689999998763221 1100 000112233333 349999
Q ss_pred cCcccccCCCCCCCCcchhhHHHhHhhhccccc--c-------cccEEEEEecCCCC-------ccchhhcCcCccccee
Q 001162 944 DEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V-------LTGVFVFAATSRPD-------LLDAALLRPGRLDRLL 1007 (1134)
Q Consensus 944 DEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~--~-------~~~v~vIatTn~p~-------~ld~allrpgRfd~~i 1007 (1134)
||++.|. ..+...|+..++.-. . ..++-||+||+..- .+.+.|.. |+. .+
T Consensus 240 ~~i~~l~-----------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~ 305 (445)
T TIGR02915 240 DEIGDLP-----------LNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EI 305 (445)
T ss_pred echhhCC-----------HHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cc
Confidence 9999983 345566666554211 1 11467777887642 12333332 332 23
Q ss_pred ecCCCCHHHHHH----HHHHHHcc----CCCC-Cccc---HHHHHHhccCCcHHHHHHHHHHHHH
Q 001162 1008 FCDFPSPRERLD----ILKVISRK----LPLA-DDVD---LEAIAHMTEGFSGADLQALLSDAQL 1060 (1134)
Q Consensus 1008 ~~~~p~~~er~~----Il~~~~~~----~~~~-~~vd---~~~La~~t~g~sg~dl~~l~~~A~~ 1060 (1134)
.+..|...+|.+ +++.++++ .+.. ..++ +..|..+.---+-++|++++..|..
T Consensus 306 ~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~ 370 (445)
T TIGR02915 306 SITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVI 370 (445)
T ss_pred eecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 445555555543 44444332 2211 2233 3334443322335777777776654
No 415
>PRK15115 response regulator GlrR; Provisional
Probab=98.30 E-value=8.9e-06 Score=98.09 Aligned_cols=196 Identities=15% Similarity=0.237 Sum_probs=114.0
Q ss_pred cccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccccc
Q 001162 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635 (1134)
Q Consensus 556 l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~ 635 (1134)
+.|....+..+.+.+..+... ...++|+|++|||||++|+++.+..... ..+++.++|..+...
T Consensus 136 lig~s~~~~~~~~~~~~~a~~-------------~~~vli~Ge~GtGk~~lA~~ih~~s~r~---~~~f~~i~c~~~~~~ 199 (444)
T PRK15115 136 IVTRSPLMLRLLEQARMVAQS-------------DVSVLINGQSGTGKEILAQAIHNASPRA---SKPFIAINCGALPEQ 199 (444)
T ss_pred ccccCHHHHHHHHHHHhhccC-------------CCeEEEEcCCcchHHHHHHHHHHhcCCC---CCCeEEEeCCCCCHH
Confidence 455556666666665443321 2459999999999999999999865322 267999999987432
Q ss_pred chhhHHHHHHHHHHHH---------------hhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--
Q 001162 636 KGPIIRQALSNFISEA---------------LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-- 698 (1134)
Q Consensus 636 ~~~~~~~~l~~~f~~a---------------~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~-- 698 (1134)
..+ . .+|... .....+.|||||+|.|.. .....|...++.-.
T Consensus 200 ~~~---~---~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~---------------~~q~~L~~~l~~~~~~ 258 (444)
T PRK15115 200 LLE---S---ELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPA---------------PLQVKLLRVLQERKVR 258 (444)
T ss_pred HHH---H---HhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCCH---------------HHHHHHHHHHhhCCEE
Confidence 211 1 122111 112356999999999842 23333444443211
Q ss_pred cccccccCCCcEEEEEecCCCCCCChhhccCCCccc-------cccCCCCCHHHH----HHHHHHHhhhc----c---cC
Q 001162 699 EKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDF-------HVQLPAPAASER----KAILEHEIQRR----S---LE 760 (1134)
Q Consensus 699 ~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~-------~i~l~~P~~eeR----~~IL~~~l~~~----~---l~ 760 (1134)
..........++.+|++|+. ++...+ ..|+|.. .+.+..|...+| ..+++.++... + ..
T Consensus 259 ~~g~~~~~~~~~rii~~~~~--~l~~~~-~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~ 335 (444)
T PRK15115 259 PLGSNRDIDIDVRIISATHR--DLPKAM-ARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRA 335 (444)
T ss_pred eCCCCceeeeeEEEEEeCCC--CHHHHH-HcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCC
Confidence 00000011125788888874 233222 2234411 234444444444 33545554421 1 24
Q ss_pred CCHHHHHHHhhhcCCCChhhHHHHHHHHHHH
Q 001162 761 CSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1134)
Q Consensus 761 ~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~ 791 (1134)
++++.+..+..+....+.++|++++++++..
T Consensus 336 ~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 336 FSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred cCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 7899999999988667899999999998754
No 416
>PRK08116 hypothetical protein; Validated
Probab=98.30 E-value=1.8e-06 Score=96.52 Aligned_cols=72 Identities=24% Similarity=0.368 Sum_probs=46.1
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhH----HHHHHHHHHHHhhcCCeEEEEcccc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII----RQALSNFISEALDHAPSIVIFDNLD 665 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~----~~~l~~~f~~a~~~~PsIL~IDEiD 665 (1134)
+.+++|+|++|||||+||.++++++.... ..+++++...+........ .....++++.. ....+|+|||++
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~---~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg 188 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG---VPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLG 188 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEeccc
Confidence 35699999999999999999999986442 5677777766532211110 01111223222 345699999995
Q ss_pred h
Q 001162 666 S 666 (1134)
Q Consensus 666 ~ 666 (1134)
.
T Consensus 189 ~ 189 (268)
T PRK08116 189 A 189 (268)
T ss_pred C
Confidence 4
No 417
>PF05729 NACHT: NACHT domain
Probab=98.30 E-value=4.5e-06 Score=85.71 Aligned_cols=145 Identities=16% Similarity=0.228 Sum_probs=81.7
Q ss_pred eEEEEcCCCccHHHHHHHHHHHhccCCcee---eEEEEEecccccccchh-hHHHHHHHH-----------H-HHHhhcC
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLV---AHIVFVCCSRLSLEKGP-IIRQALSNF-----------I-SEALDHA 655 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l~~~~~~~---~~~~~v~~s~l~~~~~~-~~~~~l~~~-----------f-~~a~~~~ 655 (1134)
-++|+|+||+|||++++.++..+....... ..++++.+......... .+...+... + ..+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 379999999999999999999886554322 34555666555432211 122222111 1 1122345
Q ss_pred CeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCC--CChhhccCCCcc
Q 001162 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK--IPQSLTSSGRFD 733 (1134)
Q Consensus 656 PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~--Ld~aL~~~gRF~ 733 (1134)
..+|+||.+|.+...... .....+...+..++..... .++.++.|+++... +...+.. .
T Consensus 82 ~~llilDglDE~~~~~~~-------~~~~~~~~~l~~l~~~~~~--------~~~~liit~r~~~~~~~~~~~~~----~ 142 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-------QERQRLLDLLSQLLPQALP--------PGVKLIITSRPRAFPDLRRRLKQ----A 142 (166)
T ss_pred ceEEEEechHhcccchhh-------hHHHHHHHHHHHHhhhccC--------CCCeEEEEEcCChHHHHHHhcCC----C
Confidence 568999999998631111 1112344445555544111 12445555554222 2222222 1
Q ss_pred ccccCCCCCHHHHHHHHHHHhh
Q 001162 734 FHVQLPAPAASERKAILEHEIQ 755 (1134)
Q Consensus 734 ~~i~l~~P~~eeR~~IL~~~l~ 755 (1134)
..+.+++.+.+++.++++.++.
T Consensus 143 ~~~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 143 QILELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred cEEEECCCCHHHHHHHHHHHhh
Confidence 4688999999999999998875
No 418
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.30 E-value=4e-06 Score=96.02 Aligned_cols=158 Identities=18% Similarity=0.263 Sum_probs=105.4
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeC---------
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKG--------- 911 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~--------- 911 (1134)
..+.-++|++.++..|.-....| .-.|+|+.|+.|||||+++|+||..+.---+.+.|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P-------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDP-------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred cchhhhcCchHHHHHHhhhhccc-------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 45667899999998886543332 23589999999999999999999988422111122
Q ss_pred ----cc-------------------cchhcccccHHHH------HH------------HHHHhhhcCCeEEEEcCccccc
Q 001162 912 ----PE-------------------LLNKYIGASEQAV------RD------------IFSKATAAAPCLLFFDEFDSIA 950 (1134)
Q Consensus 912 ----~e-------------------l~~~~~G~se~~v------~~------------lf~~A~~~~P~VLfiDEid~l~ 950 (1134)
.+ +++.=.|.+++.+ .. ++.+|.. .||+|||+..|
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnR---GIlYvDEvnlL- 156 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANR---GILYVDEVNLL- 156 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccC---CEEEEeccccc-
Confidence 00 1111124444421 11 1222322 49999999888
Q ss_pred CCCCCCCCcchhhHHHhHhhhccc---------c--cccccEEEEEecCCCC-ccchhhcCcCcccceeecCCC-CHHHH
Q 001162 951 PKRGHDNTGVTDRVVNQFLTELDG---------V--EVLTGVFVFAATSRPD-LLDAALLRPGRLDRLLFCDFP-SPRER 1017 (1134)
Q Consensus 951 ~~r~~~~~~~~~rv~~~lL~~ld~---------~--~~~~~v~vIatTn~p~-~ld~allrpgRfd~~i~~~~p-~~~er 1017 (1134)
.+.+++.||..+.. + ..--++++|||+|--+ .|-|.|+. ||+..+....| +.++|
T Consensus 157 ----------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~r 224 (423)
T COG1239 157 ----------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEER 224 (423)
T ss_pred ----------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHH
Confidence 67788999887642 1 1223588998888543 28899998 99999988766 57899
Q ss_pred HHHHHHHHcc
Q 001162 1018 LDILKVISRK 1027 (1134)
Q Consensus 1018 ~~Il~~~~~~ 1027 (1134)
.+|.+..+..
T Consensus 225 v~Ii~r~~~f 234 (423)
T COG1239 225 VEIIRRRLAF 234 (423)
T ss_pred HHHHHHHHHh
Confidence 9999876654
No 419
>PRK08181 transposase; Validated
Probab=98.28 E-value=1e-06 Score=98.09 Aligned_cols=71 Identities=30% Similarity=0.495 Sum_probs=51.3
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhcccc-cHHHHHHHHHHhhhcCCeEEEEcCccccc
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA-SEQAVRDIFSKATAAAPCLLFFDEFDSIA 950 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~~G~-se~~v~~lf~~A~~~~P~VLfiDEid~l~ 950 (1134)
..+++|+||||||||+||.++|.++ |..++.++.++++..+... .+.....++... ..+.+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc
Confidence 3579999999999999999999754 7788888888887754211 112233344443 345799999998764
No 420
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.28 E-value=1.7e-06 Score=99.18 Aligned_cols=109 Identities=16% Similarity=0.242 Sum_probs=66.1
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhcccc---cHHHHHHHHHHhhhcCCeEEEEcCcccccCC
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA---SEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~~G~---se~~v~~lf~~A~~~~P~VLfiDEid~l~~~ 952 (1134)
.+++|+||+|||||+||.++|+++ |..++.++.++++..+... ........++... ...+|+|||++....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~~- 260 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEKI- 260 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCCC-
Confidence 689999999999999999999987 7788999998887644211 1111112233333 336999999987632
Q ss_pred CCCCCCcchhhHHHhHhhhcccccccccEEEEEecCC-CCc----cchhhcC
Q 001162 953 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSR-PDL----LDAALLR 999 (1134)
Q Consensus 953 r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~-p~~----ld~allr 999 (1134)
.......|...++.......-+|| |||. |+. +++.+.+
T Consensus 261 --------t~~~~~~Lf~iin~R~~~~k~tIi-TSNl~~~el~~~~~eri~S 303 (329)
T PRK06835 261 --------TEFSKSELFNLINKRLLRQKKMII-STNLSLEELLKTYSERISS 303 (329)
T ss_pred --------CHHHHHHHHHHHHHHHHCCCCEEE-ECCCCHHHHHHHHhHHHHH
Confidence 223334444444433333333444 6665 333 3445554
No 421
>PRK12377 putative replication protein; Provisional
Probab=98.27 E-value=1e-06 Score=96.82 Aligned_cols=69 Identities=23% Similarity=0.387 Sum_probs=49.1
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhcccc--cHHHHHHHHHHhhhcCCeEEEEcCcccc
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA--SEQAVRDIFSKATAAAPCLLFFDEFDSI 949 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~~G~--se~~v~~lf~~A~~~~P~VLfiDEid~l 949 (1134)
.+++|+||||||||+||.++|+++ |..++.++.++++...... ......++++.. ....+|+|||++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 579999999999999999999987 6778888888877643211 001122344443 34469999999765
No 422
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.24 E-value=5.7e-06 Score=100.45 Aligned_cols=77 Identities=23% Similarity=0.220 Sum_probs=54.2
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhc------cc----------------------cc
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY------IG----------------------AS 922 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~------~G----------------------~s 922 (1134)
|+.+...+|+.||||+|||+++-.++... |.+.+.++..|-...+ .| ..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 56677789999999999999987777644 5566666654422110 01 11
Q ss_pred HHHHHHHHHHhhhcCCeEEEEcCccccc
Q 001162 923 EQAVRDIFSKATAAAPCLLFFDEFDSIA 950 (1134)
Q Consensus 923 e~~v~~lf~~A~~~~P~VLfiDEid~l~ 950 (1134)
+..+..+.+.....+|.+++||-+..+.
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 4556677777777889999999988774
No 423
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.23 E-value=2e-05 Score=95.71 Aligned_cols=168 Identities=17% Similarity=0.165 Sum_probs=93.4
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhc-----ccccHH-------HHHHHHHHhhhcCCeEEE
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY-----IGASEQ-------AVRDIFSKATAAAPCLLF 942 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~-----~G~se~-------~v~~lf~~A~~~~P~VLf 942 (1134)
...+++.|++|||||++|+++.... +.+|+.++|+.+-... .|.... .....|+.|. ...||
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~---~Gtl~ 237 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQAD---GGTLF 237 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeECC---CCEEE
Confidence 3469999999999999999999876 4799999998763211 111100 0011233333 34899
Q ss_pred EcCcccccCCCCCCCCcchhhHHHhHhhhccccc--c-------cccEEEEEecCCCC-------ccchhhcCcCccc-c
Q 001162 943 FDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V-------LTGVFVFAATSRPD-------LLDAALLRPGRLD-R 1005 (1134)
Q Consensus 943 iDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~--~-------~~~v~vIatTn~p~-------~ld~allrpgRfd-~ 1005 (1134)
|||++.|. ..+...|+..++.-. . .-.+-||+||+..- .+.+.|.. ||. .
T Consensus 238 l~~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~ 304 (469)
T PRK10923 238 LDEIGDMP-----------LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVI 304 (469)
T ss_pred EeccccCC-----------HHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhcce
Confidence 99999984 345556666554211 0 12467777877532 23445554 552 3
Q ss_pred eeecCCCC--HHHHHHHHHHHHcc----CCCC-Cccc---HHHHHHhccCCcHHHHHHHHHHHHHH
Q 001162 1006 LLFCDFPS--PRERLDILKVISRK----LPLA-DDVD---LEAIAHMTEGFSGADLQALLSDAQLS 1061 (1134)
Q Consensus 1006 ~i~~~~p~--~~er~~Il~~~~~~----~~~~-~~vd---~~~La~~t~g~sg~dl~~l~~~A~~~ 1061 (1134)
.|.+|+.. .++...+++.++++ .+.. ..+. +..|.++.---+-++|++++..|...
T Consensus 305 ~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~ 370 (469)
T PRK10923 305 RVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVM 370 (469)
T ss_pred eecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 44454443 23444455555432 2211 1223 33444433223347777777766543
No 424
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.22 E-value=1e-06 Score=93.11 Aligned_cols=46 Identities=28% Similarity=0.392 Sum_probs=31.2
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 553 ~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
|.++.|.+..+..+.-.. . | +.|+||+||||||||++|+.+...|-
T Consensus 2 f~dI~GQe~aKrAL~iAA---a-----------G---~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAA---A-----------G---GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp TCCSSSTHHHHHHHHHHH---H-----------C---C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhhhcCcHHHHHHHHHHH---c-----------C---CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 567788877665543211 1 1 36899999999999999999998764
No 425
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=98.22 E-value=7.5e-06 Score=102.89 Aligned_cols=396 Identities=14% Similarity=0.087 Sum_probs=187.7
Q ss_pred CCCCceEEEEcCCCccHHHHHH-HHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhc-----------
Q 001162 587 LPLPGHILIHGPPGSGKTSLAK-AVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDH----------- 654 (1134)
Q Consensus 587 ~~~p~~vLL~GppGtGKTtLar-alA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~----------- 654 (1134)
+...++++++||||+|||+|.- ++-.++- ..+++++.+.-.... ..+.-+-+.....
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~------~ev~~~Nfs~~t~T~-----s~ls~Ler~t~yy~~tg~~~l~PK 1559 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELI------TEVKYFNFSTCTMTP-----SKLSVLERETEYYPNTGVVRLYPK 1559 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhh------eeeeEEeeccccCCH-----HHHHHHHhhceeeccCCeEEEccC
Confidence 3445889999999999999753 4444332 667777765432211 1121111111100
Q ss_pred ---CCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHH---hccccccccCCCcEEEEEecCCCCCCC-----
Q 001162 655 ---APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE---YGEKRKSSCGIGPIAFVASAQSLEKIP----- 723 (1134)
Q Consensus 655 ---~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~---~~~~~~~~~~~~~V~vIattn~~~~Ld----- 723 (1134)
.-.|||.|||. | |. .....+ +. +.-++..++++ +..-...+.+..++++.|+||++.+..
T Consensus 1560 ~~vK~lVLFcDeIn-L-p~-~~~y~~--~~----vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~ 1630 (3164)
T COG5245 1560 PVVKDLVLFCDEIN-L-PY-GFEYYP--PT----VIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYY 1630 (3164)
T ss_pred cchhheEEEeeccC-C-cc-ccccCC--Cc----eEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccH
Confidence 11289999998 3 21 222222 11 12223333333 333334466667899999999976543
Q ss_pred hhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccC------CCHHHHH--------------HHhhhcCCCChhhHHH
Q 001162 724 QSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLE------CSDEILL--------------DVASKCDGYDAYDLEI 783 (1134)
Q Consensus 724 ~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~------~~~~~l~--------------~la~~teG~s~~DL~~ 783 (1134)
..+.+ -...+.+..|.-.....|...++.+--+. +++.... .......||+|+||..
T Consensus 1631 eRf~r---~~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR 1707 (3164)
T COG5245 1631 ERFIR---KPVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTR 1707 (3164)
T ss_pred HHHhc---CceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHH
Confidence 33333 12346777898888888888666542211 1111111 1112226899999988
Q ss_pred HHHHHHHHHhcccccCCCcc----------------ccccccccchhhhHhhhhccccceeccccccccCCCCCCCCCC-
Q 001162 784 LVDRTVHAAVGRYLHSDSSF----------------EKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDV- 846 (1134)
Q Consensus 784 Lv~~a~~~a~~r~~~~~~~~----------------~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~~~~~~~~~~i- 846 (1134)
.++.....+-.+......+. -........+.++.+.... ..++............+.+|
T Consensus 1708 ~lr~i~~yaeT~~~t~~~slI~~wy~ea~r~~~dRLV~qkE~st~~q~ly~~~~~----~~~e~~~g~i~e~~I~fS~Il 1783 (3164)
T COG5245 1708 SLRAIFGYAETRIDTPDVSLIIDWYCEAIREKIDRLVQQKESSTSRQDLYDFGLR----AIREMIAGHIGEAEITFSMIL 1783 (3164)
T ss_pred HHHHHHhHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH----hhhhhhhcccchhhhhHHHHH
Confidence 88765554433311000000 0000011111111111100 11100000000001122222
Q ss_pred -CChhHH-HHHHHHHHhc-------------------CCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCc
Q 001162 847 -GGLTDI-QNAIKEMIEL-------------------PSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR 905 (1134)
Q Consensus 847 -~gl~~~-k~~l~~~i~~-------------------~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~ 905 (1134)
-|++.+ ++.+.-.++. .+.|--.+++.-...++|.++.|..|+||+.+.+++|..-+.+
T Consensus 1784 ~~g~~~l~k~dl~~fvEe~~K~F~sshl~v~~V~~~~~l~HiLr~~R~l~~vggh~~l~g~~~~g~~~~~efvcwlN~~~ 1863 (3164)
T COG5245 1784 FFGMACLLKKDLAVFVEEVRKIFGSSHLDVEAVAYKDALLHILRSRRGLLVVGGHGVLKGVLIRGACDAREFVCWLNPRN 1863 (3164)
T ss_pred hccHHHHhhhhHHHHHHHHHHHhcccCCCCceeeeHHHHHHHHHHHHHHHHhccchhhhhhhhhhhHHHHHHHHHhCccc
Confidence 122221 1122211110 0011111222223456789999999999999999999887888
Q ss_pred EEEEeCcccchhcccccHHHHHHHHHHh-hhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEE
Q 001162 906 FISVKGPELLNKYIGASEQAVRDIFSKA-TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVF 984 (1134)
Q Consensus 906 ~i~i~~~el~~~~~G~se~~v~~lf~~A-~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vI 984 (1134)
++++.+..-. .+|+-+..++...-.+ -.+....+||||--.+- ..+|..|..+-....+.-+
T Consensus 1864 m~e~~~hr~~--~~~Df~d~lk~~~~~~~~~~~r~Cl~I~Esi~~e---------------s~fLe~~N~LL~n~~~~~l 1926 (3164)
T COG5245 1864 MREIFGHRDE--LTGDFRDSLKVQDLRRNIHGGRECLFIFESIPVE---------------SSFLEDFNPLLDNNRFLCL 1926 (3164)
T ss_pred hhhhhccccc--chhhHHHHHHHHHHhccccCCceEEEEecCCccc---------------hHHHHHhhhhhhccccchh
Confidence 8777664321 1344444444443333 23344678888743221 1222222222223345555
Q ss_pred EecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHH-ccCC
Q 001162 985 AATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVIS-RKLP 1029 (1134)
Q Consensus 985 atTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~-~~~~ 1029 (1134)
...|.-..|...++.-.|+ .-...-++++..+++-... +.++
T Consensus 1927 f~gne~~~I~~nlr~~~es---~~L~~dTe~tlt~vFl~~~~~Nl~ 1969 (3164)
T COG5245 1927 FSGNERIRIPENLRFVFES---TSLEKDTEATLTRVFLVYMEENLP 1969 (3164)
T ss_pred ccchhHHHHHHHHHhhhhc---cccccCCHHHHHHHHHHHHHhcCC
Confidence 5556555565555432222 2223346778888876543 4443
No 426
>PRK06526 transposase; Provisional
Probab=98.21 E-value=1.8e-06 Score=95.69 Aligned_cols=71 Identities=25% Similarity=0.396 Sum_probs=48.4
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhcccc-cHHHHHHHHHHhhhcCCeEEEEcCccccc
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA-SEQAVRDIFSKATAAAPCLLFFDEFDSIA 950 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~~G~-se~~v~~lf~~A~~~~P~VLfiDEid~l~ 950 (1134)
+.+++|+||||||||++|.+++.++ |..+..++.++++...... ....+...+... ..+.+|+|||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 4589999999999999999998865 6677777777766543211 111222233322 346799999999764
No 427
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.20 E-value=2.5e-06 Score=85.74 Aligned_cols=86 Identities=24% Similarity=0.381 Sum_probs=56.6
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHcC---CcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCC
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAACS---LRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRG 954 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~~---~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~ 954 (1134)
...+||+|++||||+++|+++....+ .+|+.+++..+- .++++.+.. ..|||+|+|.|
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a~~---gtL~l~~i~~L----- 81 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQAKG---GTLYLKNIDRL----- 81 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHCTT---SEEEEECGCCS-----
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHcCC---CEEEECChHHC-----
Confidence 35799999999999999999998775 366666665532 456777644 49999999998
Q ss_pred CCCCcchhhHHHhHhhhcccccccccEEEEEecCC
Q 001162 955 HDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSR 989 (1134)
Q Consensus 955 ~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~ 989 (1134)
.......|+..++..+ ..++-+|++++.
T Consensus 82 ------~~~~Q~~L~~~l~~~~-~~~~RlI~ss~~ 109 (138)
T PF14532_consen 82 ------SPEAQRRLLDLLKRQE-RSNVRLIASSSQ 109 (138)
T ss_dssp -------HHHHHHHHHHHHHCT-TTTSEEEEEECC
T ss_pred ------CHHHHHHHHHHHHhcC-CCCeEEEEEeCC
Confidence 3345555555555333 233444444443
No 428
>PRK06921 hypothetical protein; Provisional
Probab=98.19 E-value=2.5e-06 Score=95.25 Aligned_cols=68 Identities=22% Similarity=0.328 Sum_probs=46.5
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc----CCcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCccc
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDS 948 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~----~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~ 948 (1134)
..+++|+||||||||+|+.++|+++ |..++.+...+++...... .......++.. ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 4579999999999999999999976 5677788877765532111 11222233333 2346999999954
No 429
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.19 E-value=4.8e-06 Score=90.53 Aligned_cols=162 Identities=22% Similarity=0.314 Sum_probs=88.5
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHcCC---cEEEEeCcccc-----hhc------------------------------c
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAACSL---RFISVKGPELL-----NKY------------------------------I 919 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~~~---~~i~i~~~el~-----~~~------------------------------~ 919 (1134)
...++++||.|+|||++++.+.+.... ..+.+...+.. ... .
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 457999999999999999999998832 11111110000 000 0
Q ss_pred cccHHHHHHHHHHhhhc-CCeEEEEcCccccc-CCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCcc----
Q 001162 920 GASEQAVRDIFSKATAA-APCLLFFDEFDSIA-PKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL---- 993 (1134)
Q Consensus 920 G~se~~v~~lf~~A~~~-~P~VLfiDEid~l~-~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~l---- 993 (1134)
......+..+++..... ...||+|||++.+. ..+ ........+...++......++.+|.+++.....
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~ 173 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFL 173 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc------chHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhh
Confidence 12245566666665443 34899999999997 211 1345566666666653334444444444332221
Q ss_pred --chhhcCcCcccceeecCCCCHHHHHHHHHHHHccC-CC-CCcccHHHHHHhccCCcH
Q 001162 994 --DAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL-PL-ADDVDLEAIAHMTEGFSG 1048 (1134)
Q Consensus 994 --d~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~-~~-~~~vd~~~La~~t~g~sg 1048 (1134)
...+.. |+.. +.+++.+.++..++++...++. .+ .++.+++.+...+.|..+
T Consensus 174 ~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 174 DDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp -TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HH
T ss_pred cccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHH
Confidence 122333 7777 9999999999999999987665 11 256677888888887654
No 430
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.18 E-value=2.2e-05 Score=95.00 Aligned_cols=165 Identities=21% Similarity=0.280 Sum_probs=90.3
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhc-----ccccHH-------HHHHHHHHhhhcCCeEEEE
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY-----IGASEQ-------AVRDIFSKATAAAPCLLFF 943 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~-----~G~se~-------~v~~lf~~A~~~~P~VLfi 943 (1134)
..++++|++||||+++|+++.... +.+|+.++|..+-... .|.... .-...|..|.+ .+|||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~---gtl~l 243 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANE---GTLLL 243 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCC---CEEEE
Confidence 479999999999999999998765 5799999998763221 111000 00123333333 49999
Q ss_pred cCcccccCCCCCCCCcchhhHHHhHhhhccccc--c-------cccEEEEEecCCCCccchhhcCcCcccc-------ee
Q 001162 944 DEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V-------LTGVFVFAATSRPDLLDAALLRPGRLDR-------LL 1007 (1134)
Q Consensus 944 DEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~--~-------~~~v~vIatTn~p~~ld~allrpgRfd~-------~i 1007 (1134)
||++.|. ..+...|+..++.-. . ..++.||+||+..-. .+.+.|+|.. .+
T Consensus 244 d~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~---~~~~~g~~~~~l~~~l~~~ 309 (457)
T PRK11361 244 DEIGEMP-----------LVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQ---AMVKEGTFREDLFYRLNVI 309 (457)
T ss_pred echhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHH---HHHHcCCchHHHHHHhccc
Confidence 9999984 345556666554311 1 124778888876321 2222334433 23
Q ss_pred ecCCCCHHHHHH----HHHHHHccC----CCC-CcccHH---HHHHhccCCcHHHHHHHHHHHHH
Q 001162 1008 FCDFPSPRERLD----ILKVISRKL----PLA-DDVDLE---AIAHMTEGFSGADLQALLSDAQL 1060 (1134)
Q Consensus 1008 ~~~~p~~~er~~----Il~~~~~~~----~~~-~~vd~~---~La~~t~g~sg~dl~~l~~~A~~ 1060 (1134)
.+..|...+|.+ +...++.+. +.. ..++.+ .|..+.---+-+++++++..|..
T Consensus 310 ~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~ 374 (457)
T PRK11361 310 HLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVV 374 (457)
T ss_pred eecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHH
Confidence 455566555532 333333321 111 123333 33333322334777777666553
No 431
>PF03152 UFD1: Ubiquitin fusion degradation protein UFD1; InterPro: IPR004854 Post-translational ubiquitin-protein conjugates are recognised for degradation by the ubiquitin fusion degradation (UFD) pathway. Several proteins involved in this pathway have been identified []. This family includes UFD1, a 40kDa protein that is essential for vegetative cell viability []. The human UFD1 gene is expressed at high levels during embryogenesis, especially in the eyes and in the inner ear primordia and is thought to be important in the determination of ectoderm-derived structures, including neural crest cells. In addition, this gene is deleted in the CATCH-22 (cardiac defects, abnormal facies, thymic hypoplasia, cleft palate and hypocalcaemia with deletions on chromosome 22) syndrome. This clinical syndrome is associated with a variety of developmental defects, all characterised by microdeletions on 22q11.2. Two such developmental defects are the DiGeorge syndrome OMIM:188400, and the velo-cardio- facial syndrome OMIM:145410. Several of the abnormalities associated with these conditions are thought to be due to defective neural crest cell differentiation []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1ZC1_A 2YUJ_A.
Probab=98.18 E-value=2.2e-05 Score=81.10 Aligned_cols=150 Identities=16% Similarity=0.202 Sum_probs=111.4
Q ss_pred cceeeCCHHHHHHHhcccccCCCCceEEEEEEeC-CCCeEEEEecCccCCCCceEecHHHHhhcCCCCCCEEEEEEeeCC
Q 001162 13 NCFVSLPLKLIETLESTRSAHLLPQVLSLELRSR-SNQRWVVAWSGATSSSSFIEVARQFAECISLADHTIVQVRVVSNV 91 (1134)
Q Consensus 13 ~~~v~lp~~l~~~l~~~~~~~~~~q~~~~e~~~~-~~~~~~~~w~g~~s~~~~iei~~~~a~~~gl~~~~~v~~~~~~~~ 91 (1134)
+.=|-||++..+.|.+.+.. .-+..+|+.. .++.+|+|=-..++..++|-+.+-+.+.|||++|+.|.|+ ..+.
T Consensus 25 gdKiiLP~s~L~~L~~~~~~----~P~~F~i~n~~~~~~th~GVlEFsA~eG~i~lP~wmm~~L~l~~g~~V~v~-~~~L 99 (176)
T PF03152_consen 25 GDKIILPPSALDELSRLNIP----YPMLFEISNPDNGKRTHCGVLEFSAEEGTIYLPPWMMQNLGLQEGDIVRVE-YVSL 99 (176)
T ss_dssp TTEEEE-HHHHHHHHHTT------SS-EEEEEETTTTEEEEEEEEEE--CTTEEEE-CHHHHHHT--TTEEEEEE-EEE-
T ss_pred CCeEEcCHHHHHHHHhccCC----CCEEEEEecCCCCcEEEEEEEEeEcCCCeEEeCccHHhhcCCCCCCEEEEE-EeEC
Confidence 34578999999999986542 3467777765 4467999988887778899999999999999999999999 5799
Q ss_pred ccceEEEEecCCcchHHHHHhcHHHHHHHHhcccceecCCCEEEEEecCceEEEEEEcccCCCCCeEEccCCCEEEEec
Q 001162 92 LKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVVQLVPGTEVAVAP 170 (1134)
Q Consensus 92 ~~~~~v~veP~t~dDwei~e~~a~~~e~~ll~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~l~~~tev~vap 170 (1134)
|.++.|.+.|.+.+=.+ |+-+-..||.+| .+--+++.|.++.+.- ++..-.|.|..+.|+..+..+..|-||=++|
T Consensus 100 Pkgt~vkLqP~~~~F~~-i~n~KavLE~~L-r~ystLT~Gd~I~i~~-~~~~y~l~V~e~kP~~aV~IidTDl~vDf~~ 175 (176)
T PF03152_consen 100 PKGTFVKLQPQSSDFLD-ISNPKAVLERAL-RNYSTLTKGDTISIEY-NNKTYELDVVEVKPENAVSIIDTDLEVDFEP 175 (176)
T ss_dssp ---SEEEEEESCHHHHC-SS-HHHHHHHHH-CC-SEEETTSEEEEEC-TTEEEEEEEEEECSSSCEE-SSS-SEEEE--
T ss_pred CCCCEEEEeECCCcccc-ccchHHHHHhhc-ccCceeecCCEEEEEe-CCEEEEEEEEEEcCCCEEEEEeCceEEEecC
Confidence 99999999999875444 566667899999 8899999999999996 6677799999999999889999999987766
No 432
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.17 E-value=1.7e-06 Score=90.82 Aligned_cols=100 Identities=20% Similarity=0.372 Sum_probs=60.2
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhcccc-cHHHHHHHHHHhhhcCCeEEEEcCcccccCCC
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA-SEQAVRDIFSKATAAAPCLLFFDEFDSIAPKR 953 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~~G~-se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r 953 (1134)
..+++|+||||||||++|.++|+++ |..+..++.++|+...-.. ......+.++.... ..+|+|||+....
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~~~--- 121 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGYEP--- 121 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTSS----
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEecccccceee---
Confidence 4689999999999999999999866 7889999999987654211 01122334444433 3699999996532
Q ss_pred CCCCCcchhhHHHhHhhhcccccccccEEEEEecCCC
Q 001162 954 GHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP 990 (1134)
Q Consensus 954 ~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p 990 (1134)
..+...+.|...++..... +-.|| |||..
T Consensus 122 ------~~~~~~~~l~~ii~~R~~~-~~tIi-TSN~~ 150 (178)
T PF01695_consen 122 ------LSEWEAELLFEIIDERYER-KPTII-TSNLS 150 (178)
T ss_dssp --------HHHHHCTHHHHHHHHHT--EEEE-EESS-
T ss_pred ------ecccccccchhhhhHhhcc-cCeEe-eCCCc
Confidence 1233445555555544333 33333 88853
No 433
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.17 E-value=4.8e-05 Score=92.16 Aligned_cols=201 Identities=15% Similarity=0.272 Sum_probs=108.1
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEE-Eeccc
Q 001162 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVF-VCCSR 631 (1134)
Q Consensus 553 ~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~-v~~s~ 631 (1134)
+.+|......++++...+...+.. ..+.+-+||+|||||||||+++.+|++++-. +.. .+...
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~~~----------~~~~~iLlLtGP~G~GKtttv~~La~elg~~------v~Ew~np~~ 81 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMFSG----------SSPKRILLLTGPSGCGKTTTVKVLAKELGFE------VQEWINPVS 81 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHhcc----------CCCcceEEEECCCCCCHHHHHHHHHHHhCCe------eEEecCCCC
Confidence 445555667777887777654321 2233458899999999999999999998722 111 11111
Q ss_pred ----------cccc--chh---hHHHHHHHH-HHHHhh-----------cCCeEEEEcccchhccCCCCCCCCCCchhHH
Q 001162 632 ----------LSLE--KGP---IIRQALSNF-ISEALD-----------HAPSIVIFDNLDSIISSSSDPEGSQPSTSVI 684 (1134)
Q Consensus 632 ----------l~~~--~~~---~~~~~l~~~-f~~a~~-----------~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~ 684 (1134)
+.+. ..+ .....+.++ +..+.. ..+.||+|||+=.++. ... .
T Consensus 82 ~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~----------~~~-~ 150 (519)
T PF03215_consen 82 FRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFH----------RDT-S 150 (519)
T ss_pred ccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccc----------hhH-H
Confidence 0000 000 001112222 111111 2466999999965541 111 2
Q ss_pred HHHHHHHHHHHHhccccccccCCCcEEEEEe-cCC------CC--------CCChhhccCCCccccccCCCCCHHHHHHH
Q 001162 685 ALTKFLVDIMDEYGEKRKSSCGIGPIAFVAS-AQS------LE--------KIPQSLTSSGRFDFHVQLPAPAASERKAI 749 (1134)
Q Consensus 685 ~l~~~L~~~ld~~~~~~~~~~~~~~V~vIat-tn~------~~--------~Ld~aL~~~gRF~~~i~l~~P~~eeR~~I 749 (1134)
.+...|..++.. ... .++++|.| +.. .. -+++.+....+. .+|.|.+-+..-...-
T Consensus 151 ~f~~~L~~~l~~----~~~----~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKa 221 (519)
T PF03215_consen 151 RFREALRQYLRS----SRC----LPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKA 221 (519)
T ss_pred HHHHHHHHHHHc----CCC----CCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHH
Confidence 444444443332 111 15777776 111 11 245555553344 3788988888777777
Q ss_pred HHHHhhhc-----c-cCCC--HHHHHHHhhhcCCCChhhHHHHHHHHHHHHh
Q 001162 750 LEHEIQRR-----S-LECS--DEILLDVASKCDGYDAYDLEILVDRTVHAAV 793 (1134)
Q Consensus 750 L~~~l~~~-----~-l~~~--~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~ 793 (1134)
|+..+... + .... ...++.|+..+.| ||+..+...-..+.
T Consensus 222 L~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 222 LKRILKKEARSSSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHHHHhhhhcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 77666543 1 1222 3458888887666 88877766554444
No 434
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.16 E-value=3.4e-06 Score=93.43 Aligned_cols=100 Identities=20% Similarity=0.270 Sum_probs=63.8
Q ss_pred CCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhcc-----cccHHHHHHHHHHhhhcCCeEEEEcCccc
Q 001162 877 LRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYI-----GASEQAVRDIFSKATAAAPCLLFFDEFDS 948 (1134)
Q Consensus 877 ~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~~-----G~se~~v~~lf~~A~~~~P~VLfiDEid~ 948 (1134)
.+.+++|+||||+|||+||.|+|+++ |..++.+..++++.... |..+..+... . ....+|+|||+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~---l--~~~dlLIiDDlG~ 178 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE---L--KKVDLLIIDDIGY 178 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH---h--hcCCEEEEecccC
Confidence 34689999999999999999999877 78899999999876532 2222222222 2 2346999999987
Q ss_pred ccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCc
Q 001162 949 IAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL 992 (1134)
Q Consensus 949 l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ 992 (1134)
.-. ....-+.+...+......... +.|||.+..
T Consensus 179 ~~~---------~~~~~~~~~q~I~~r~~~~~~--~~tsN~~~~ 211 (254)
T COG1484 179 EPF---------SQEEADLLFQLISRRYESRSL--IITSNLSFG 211 (254)
T ss_pred ccC---------CHHHHHHHHHHHHHHHhhccc--eeecCCChH
Confidence 522 222223333334332323333 668887543
No 435
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.15 E-value=2.4e-06 Score=93.71 Aligned_cols=69 Identities=19% Similarity=0.361 Sum_probs=51.4
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhcccc---cHHHHHHHHHHhhhcCCeEEEEcCcccc
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA---SEQAVRDIFSKATAAAPCLLFFDEFDSI 949 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~~G~---se~~v~~lf~~A~~~~P~VLfiDEid~l 949 (1134)
.+++|+|+||||||+||.++|.++ |..++.++.++++..+.+. ......++++... ..++|+|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 489999999999999999999987 7788889998887643321 1122234444433 4579999999886
No 436
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.15 E-value=5.5e-06 Score=103.84 Aligned_cols=164 Identities=15% Similarity=0.133 Sum_probs=95.0
Q ss_pred CCCChhHHHHHHHHHHhcCCCchhHHh--------hCCCCCCCceEEEcCCCCchhHHHHHHHHHcC-------CcEEEE
Q 001162 845 DVGGLTDIQNAIKEMIELPSKFPNIFA--------QAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-------LRFISV 909 (1134)
Q Consensus 845 ~i~gl~~~k~~l~~~i~~~~~~~~~~~--------~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~-------~~~i~i 909 (1134)
.|.|.+.+|+.+.-.+........-+. ...++-..++||.|.||||||.+|+++++... .++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 467888888877555433221100000 02235556899999999999999999998653 334443
Q ss_pred eCcccch-h--cccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc----------
Q 001162 910 KGPELLN-K--YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---------- 976 (1134)
Q Consensus 910 ~~~el~~-~--~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~---------- 976 (1134)
.+..... . ..|+.. .-...+..|.+ .+++|||++.+. ......|+..|+.-.
T Consensus 531 gLTa~~~~~d~~tG~~~-le~GaLvlAdg---GtL~IDEidkms-----------~~~Q~aLlEaMEqqtIsI~KaGi~~ 595 (915)
T PTZ00111 531 GLTASIKFNESDNGRAM-IQPGAVVLANG---GVCCIDELDKCH-----------NESRLSLYEVMEQQTVTIAKAGIVA 595 (915)
T ss_pred cccchhhhcccccCccc-ccCCcEEEcCC---CeEEecchhhCC-----------HHHHHHHHHHHhCCEEEEecCCcce
Confidence 3332211 0 001100 00012223333 399999999983 344455666664311
Q ss_pred -ccccEEEEEecCCC-----------Cc--cchhhcCcCccccee-ecCCCCHHHHHHHHHHHH
Q 001162 977 -VLTGVFVFAATSRP-----------DL--LDAALLRPGRLDRLL-FCDFPSPRERLDILKVIS 1025 (1134)
Q Consensus 977 -~~~~v~vIatTn~p-----------~~--ld~allrpgRfd~~i-~~~~p~~~er~~Il~~~~ 1025 (1134)
-..++-||||+|.. +. +.++|++ |||-++ ..+.|+.+.=..|-++++
T Consensus 596 tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 596 TLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred ecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHH
Confidence 12468899999863 12 6789999 999775 567777766555554444
No 437
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.15 E-value=2.3e-05 Score=95.02 Aligned_cols=168 Identities=19% Similarity=0.198 Sum_probs=92.7
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhc-----ccccHH-------HHHHHHHHhhhcCCeEEEE
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY-----IGASEQ-------AVRDIFSKATAAAPCLLFF 943 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~-----~G~se~-------~v~~lf~~A~~~~P~VLfi 943 (1134)
.++++.|.+||||+++|+++.... +.+|+.++|..+-... .|.... .....|..| ....|||
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 234 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQA---DGGTLFL 234 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEEC---CCCeEEE
Confidence 469999999999999999998875 5799999998763211 111000 001122232 2458999
Q ss_pred cCcccccCCCCCCCCcchhhHHHhHhhhccccc--c-------cccEEEEEecCCCC-------ccchhhcCcCccc-ce
Q 001162 944 DEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V-------LTGVFVFAATSRPD-------LLDAALLRPGRLD-RL 1006 (1134)
Q Consensus 944 DEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~--~-------~~~v~vIatTn~p~-------~ld~allrpgRfd-~~ 1006 (1134)
||++.|.. .+...|+..++.-. . ..++-||++|+..- .+.+.|.. |+. ..
T Consensus 235 ~ei~~l~~-----------~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~ 301 (463)
T TIGR01818 235 DEIGDMPL-----------DAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIR 301 (463)
T ss_pred EchhhCCH-----------HHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcce
Confidence 99999843 34455555553211 0 11466777776532 13334443 443 25
Q ss_pred eecCCCC--HHHHHHHHHHHHccC----CCC-CcccHHHHHHhc-cCCc--HHHHHHHHHHHHHHH
Q 001162 1007 LFCDFPS--PRERLDILKVISRKL----PLA-DDVDLEAIAHMT-EGFS--GADLQALLSDAQLSA 1062 (1134)
Q Consensus 1007 i~~~~p~--~~er~~Il~~~~~~~----~~~-~~vd~~~La~~t-~g~s--g~dl~~l~~~A~~~a 1062 (1134)
|++|+.. .++...+++.+++.. +.. ..++.+.+.... .++. -++|++++..|...+
T Consensus 302 i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 302 IHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred ecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 5555554 455555665554332 211 233433333322 2344 377777777666543
No 438
>PRK09183 transposase/IS protein; Provisional
Probab=98.15 E-value=3.5e-06 Score=93.81 Aligned_cols=72 Identities=26% Similarity=0.444 Sum_probs=50.9
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhcccc-cHHHHHHHHHHhhhcCCeEEEEcCccccc
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA-SEQAVRDIFSKATAAAPCLLFFDEFDSIA 950 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~~G~-se~~v~~lf~~A~~~~P~VLfiDEid~l~ 950 (1134)
..+++|+||||||||++|.+++... |..+..+++.++...+... ....+..+|... ...+.+++|||++.+.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 4579999999999999999998653 6778888888876543211 111234455443 2456799999998753
No 439
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.14 E-value=3.6e-06 Score=95.74 Aligned_cols=70 Identities=19% Similarity=0.336 Sum_probs=50.9
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhccccc-HHHHHHHHHHhhhcCCeEEEEcCcccc
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGAS-EQAVRDIFSKATAAAPCLLFFDEFDSI 949 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~~G~s-e~~v~~lf~~A~~~~P~VLfiDEid~l 949 (1134)
..|++|+||+|||||+||.|+|+++ |..+..+..++|+..+.... ...+.+.++..+ ...+|+|||++.-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 4689999999999999999999988 77888888888765542110 112334444443 3469999999764
No 440
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.14 E-value=1.9e-05 Score=96.81 Aligned_cols=78 Identities=22% Similarity=0.182 Sum_probs=49.7
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchh--------------c--------cc------cc
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK--------------Y--------IG------AS 922 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~--------------~--------~G------~s 922 (1134)
|+.....++++|+||+|||+++..++.+. |.+.+.++..+-... + .. ..
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 45666778999999999999998877543 666666654321110 0 00 01
Q ss_pred HHHHHHHHHHhhhcCCeEEEEcCcccccC
Q 001162 923 EQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1134)
Q Consensus 923 e~~v~~lf~~A~~~~P~VLfiDEid~l~~ 951 (1134)
+..+..+.+.....+|.+++||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 22333444445567788999999988754
No 441
>PF13173 AAA_14: AAA domain
Probab=98.12 E-value=7.4e-06 Score=81.16 Aligned_cols=69 Identities=17% Similarity=0.325 Sum_probs=47.9
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcC--CcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccc
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSI 949 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~--~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l 949 (1134)
..++++||.|||||++++.+++.+. .+++.++..+.........+ +.+.+.......+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4589999999999999999998876 78888888775432111111 223333322225679999999987
No 442
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.12 E-value=7.8e-06 Score=98.68 Aligned_cols=26 Identities=46% Similarity=0.735 Sum_probs=22.9
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
..+++|+||||||||++++.++..+.
T Consensus 211 g~~vlliG~pGsGKTtlar~l~~llp 236 (499)
T TIGR00368 211 GHNLLLFGPPGSGKTMLASRLQGILP 236 (499)
T ss_pred CCEEEEEecCCCCHHHHHHHHhcccC
Confidence 36799999999999999999998653
No 443
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.10 E-value=3.2e-05 Score=88.76 Aligned_cols=84 Identities=19% Similarity=0.245 Sum_probs=59.4
Q ss_pred CeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHh----ccccccccCCCcEEEEEecCCCC-CCChhhccCC
Q 001162 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY----GEKRKSSCGIGPIAFVASAQSLE-KIPQSLTSSG 730 (1134)
Q Consensus 656 PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~----~~~~~~~~~~~~V~vIattn~~~-~Ld~aL~~~g 730 (1134)
.+||++||+..|. .++...|++.+..- ....-...-.-++++|||+|+.+ .|-+-|+.
T Consensus 145 RGIlYvDEvnlL~---------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD-- 207 (423)
T COG1239 145 RGILYVDEVNLLD---------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD-- 207 (423)
T ss_pred CCEEEEecccccc---------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--
Confidence 3599999998773 26777777776542 11111122334799999999854 57788888
Q ss_pred CccccccCCCC-CHHHHHHHHHHHhhh
Q 001162 731 RFDFHVQLPAP-AASERKAILEHEIQR 756 (1134)
Q Consensus 731 RF~~~i~l~~P-~~eeR~~IL~~~l~~ 756 (1134)
||...+.+..| +.++|.+|+++.+..
T Consensus 208 Rfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 208 RFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred hhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 99999988766 568999999876654
No 444
>PF14516 AAA_35: AAA-like domain
Probab=98.08 E-value=0.00025 Score=82.00 Aligned_cols=179 Identities=17% Similarity=0.185 Sum_probs=104.7
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHH---------------------------
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ--------------------------- 642 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~--------------------------- 642 (1134)
+..+.|.||..+|||++...+.+.+.... ..+++++|..+.........+
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~---~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~ 107 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQG---YRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEI 107 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCC---CEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhc
Confidence 45689999999999999999998886443 567788887654321111111
Q ss_pred ----HHHHHHHHH---hhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEe
Q 001162 643 ----ALSNFISEA---LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVAS 715 (1134)
Q Consensus 643 ----~l~~~f~~a---~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIat 715 (1134)
.+...|++. ....|-||+|||+|.++.. ......++..|..+.+.... ...+ ..+.+|.+
T Consensus 108 ~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~---------~~~~~dF~~~LR~~~~~~~~-~~~~---~~L~li~~ 174 (331)
T PF14516_consen 108 GSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEY---------PQIADDFFGLLRSWYEQRKN-NPIW---QKLRLILA 174 (331)
T ss_pred CChhhHHHHHHHHHHhcCCCCEEEEEechhhhccC---------cchHHHHHHHHHHHHHhccc-Cccc---ceEEEEEe
Confidence 112222221 1136789999999999731 11122445555444442221 1111 12333333
Q ss_pred cCCCCCCChh-hccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHh
Q 001162 716 AQSLEKIPQS-LTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAV 793 (1134)
Q Consensus 716 tn~~~~Ld~a-L~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~ 793 (1134)
......+... -.+|..+...+.++..+.+|...+++.+ +...++..++.+...|.|... |++.++....
T Consensus 175 ~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~----~~~~~~~~~~~l~~~tgGhP~-----Lv~~~~~~l~ 244 (331)
T PF14516_consen 175 GSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRY----GLEFSQEQLEQLMDWTGGHPY-----LVQKACYLLV 244 (331)
T ss_pred cCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhh----hccCCHHHHHHHHHHHCCCHH-----HHHHHHHHHH
Confidence 3222222222 2344455567899999999988877654 556777779999999999643 5555554443
No 445
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=2e-05 Score=88.18 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=82.7
Q ss_pred CCCCceEEEcCCCCchhHHHHHHHHHcCC----------------cEEEEeCcccchhcccccHHHHHHHHHHhh----h
Q 001162 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSL----------------RFISVKGPELLNKYIGASEQAVRDIFSKAT----A 935 (1134)
Q Consensus 876 ~~~~~vLL~GppGtGKT~lA~alA~~~~~----------------~~i~i~~~el~~~~~G~se~~v~~lf~~A~----~ 935 (1134)
+.+..+||+||.|+||+.+|.++|..+-. .+..+.+.. .++. -+-+.+|++.+.+. .
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~--I~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRL--HSIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCc--CcHHHHHHHHHHHhhCccC
Confidence 34557999999999999999999987632 122221110 0000 12445666665542 3
Q ss_pred cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCC
Q 001162 936 AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFP 1012 (1134)
Q Consensus 936 ~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p 1012 (1134)
+...|++||++|.+ +..+.|.||+.|+ ++..++++|..|+.++.+-|.+++ |+. .+.|+++
T Consensus 94 ~~~kv~ii~~ad~m-----------t~~AaNaLLK~LE--EPp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRM-----------TLDAISAFLKVLE--DPPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred CCceEEEEechhhc-----------CHHHHHHHHHHhh--cCCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 44579999999998 5678899999998 677788888899999999999998 554 4456543
No 446
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.06 E-value=3.6e-05 Score=93.18 Aligned_cols=171 Identities=17% Similarity=0.245 Sum_probs=94.3
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCCcEEEEe-Ccccc------hhccccc---------HHHHHHH-HHHhhh------
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVK-GPELL------NKYIGAS---------EQAVRDI-FSKATA------ 935 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~-~~el~------~~~~G~s---------e~~v~~l-f~~A~~------ 935 (1134)
.-+||+||||||||++++++|+++|..+.+-. +..+. ..|.+.. ...+.++ +..++.
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~ 125 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMS 125 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 45788999999999999999999998887643 22211 1111111 0122222 222221
Q ss_pred -----cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccc-cEEEEEe-cCC------C-C-------ccc
Q 001162 936 -----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLT-GVFVFAA-TSR------P-D-------LLD 994 (1134)
Q Consensus 936 -----~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~-~v~vIat-Tn~------p-~-------~ld 994 (1134)
..+.||+|||+=.++.. . ..++-+.|...+.. ... .++||.+ +.. . . .+.
T Consensus 126 g~~~~~~~kvILVEDlPN~~~~----~---~~~f~~~L~~~l~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~ 196 (519)
T PF03215_consen 126 GSNSSSNKKVILVEDLPNVFHR----D---TSRFREALRQYLRS--SRCLPLVFIISETESLSGDNSYRSNSFTAERLFP 196 (519)
T ss_pred CCCcCCCceEEEeeccccccch----h---HHHHHHHHHHHHHc--CCCCCEEEEEecccccCCCCcccccchhhhhccC
Confidence 24679999998765432 1 13333333333332 122 5555555 111 1 1 245
Q ss_pred hhhcCcCcccceeecCCCCHHHHHHHHHHHHccC-----C---CCCccc-HHHHHHhccCCcHHHHHHHHHHHHHHHH
Q 001162 995 AALLRPGRLDRLLFCDFPSPRERLDILKVISRKL-----P---LADDVD-LEAIAHMTEGFSGADLQALLSDAQLSAV 1063 (1134)
Q Consensus 995 ~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~-----~---~~~~vd-~~~La~~t~g~sg~dl~~l~~~A~~~a~ 1063 (1134)
+.++.-.++ ..|.|-+-...-...-|+.++... + .....+ ++.|+.. +++||+.++..-.+.+.
T Consensus 197 ~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~----s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 197 KEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAES----SNGDIRSAINNLQFWCL 269 (519)
T ss_pred HHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHh----cCchHHHHHHHHHHHhc
Confidence 555542233 467887777777666676665433 1 111122 4455543 45899998887777666
No 447
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.06 E-value=1.3e-05 Score=79.19 Aligned_cols=98 Identities=20% Similarity=0.279 Sum_probs=59.8
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc--------CCcEEEEeCcccch----------hc----cc-ccHHH-HHHHHHHh
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC--------SLRFISVKGPELLN----------KY----IG-ASEQA-VRDIFSKA 933 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~--------~~~~i~i~~~el~~----------~~----~G-~se~~-v~~lf~~A 933 (1134)
...++++||||+|||++++.++..+ ..+++.++++...+ .+ .+ .+... ...+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3578999999999999999999987 77888888765431 00 01 22333 33333444
Q ss_pred hhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEec
Q 001162 934 TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT 987 (1134)
Q Consensus 934 ~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatT 987 (1134)
......+|+|||+|.+. ...+++.+...++ ...-.++++|+.
T Consensus 84 ~~~~~~~lviDe~~~l~----------~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF----------SDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH----------THHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC----------CHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 44444599999999984 1556666666555 222345555544
No 448
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=0.00011 Score=83.29 Aligned_cols=125 Identities=12% Similarity=0.113 Sum_probs=89.9
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHcCC-------------cEEEEeCcccchhcccccHHHHHHHHHHhh-----hcCCe
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAACSL-------------RFISVKGPELLNKYIGASEQAVRDIFSKAT-----AAAPC 939 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~~~-------------~~i~i~~~el~~~~~G~se~~v~~lf~~A~-----~~~P~ 939 (1134)
+..+||+|+.|+||+.+|+.+|+.+-. +++.++.. +.- -+-+.++++.+... .+...
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~--i~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKD--LSKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCc--CCHHHHHHHHHHhccCCcccCCce
Confidence 346889999999999999999987611 23333210 010 12356667666552 13567
Q ss_pred EEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHH
Q 001162 940 LLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLD 1019 (1134)
Q Consensus 940 VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~ 1019 (1134)
|++||++|.+ .....|.||+.|+ ++.+.+++|.+|+.++.+-|.+++ |+ ..+.|++++.++...
T Consensus 93 vvII~~~e~m-----------~~~a~NaLLK~LE--EPp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~~l~~ 156 (299)
T PRK07132 93 ILIIKNIEKT-----------SNSLLNALLKTIE--EPPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQKILA 156 (299)
T ss_pred EEEEeccccc-----------CHHHHHHHHHHhh--CCCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHHHHHH
Confidence 9999999887 4567889999998 456677777777788889899988 44 468999999988877
Q ss_pred HHHH
Q 001162 1020 ILKV 1023 (1134)
Q Consensus 1020 Il~~ 1023 (1134)
.+..
T Consensus 157 ~l~~ 160 (299)
T PRK07132 157 KLLS 160 (299)
T ss_pred HHHH
Confidence 6654
No 449
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=4.6e-05 Score=85.27 Aligned_cols=126 Identities=13% Similarity=0.191 Sum_probs=78.6
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhccCC----------ceeeEEEEEecccc-cccchhhHHHHHHHHHHHHhhcCCe
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHK----------DLVAHIVFVCCSRL-SLEKGPIIRQALSNFISEALDHAPS 657 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~~~~----------~~~~~~~~v~~s~l-~~~~~~~~~~~l~~~f~~a~~~~Ps 657 (1134)
.+..+||+||+|+||+++|.++|+.+-... ...-.+..+....- ..-..+.++.....+..........
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCce
Confidence 346699999999999999999999885421 00111222322111 0112333333222222222223345
Q ss_pred EEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCcccccc
Q 001162 658 IVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQ 737 (1134)
Q Consensus 658 IL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~ 737 (1134)
|++||++|.+.. ...+.|+..+++... ++++|..|+.++.+.|.++| |.. .+.
T Consensus 98 v~ii~~ad~mt~---------------~AaNaLLK~LEEPp~---------~~~fiL~~~~~~~ll~TI~S--Rcq-~~~ 150 (290)
T PRK05917 98 IYIIHEADRMTL---------------DAISAFLKVLEDPPQ---------HGVIILTSAKPQRLPPTIRS--RSL-SIH 150 (290)
T ss_pred EEEEechhhcCH---------------HHHHHHHHHhhcCCC---------CeEEEEEeCChhhCcHHHHh--cce-EEE
Confidence 999999999852 445667777776543 47888888889999999998 765 667
Q ss_pred CCCC
Q 001162 738 LPAP 741 (1134)
Q Consensus 738 l~~P 741 (1134)
|+++
T Consensus 151 ~~~~ 154 (290)
T PRK05917 151 IPME 154 (290)
T ss_pred ccch
Confidence 7765
No 450
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.03 E-value=2.6e-05 Score=77.03 Aligned_cols=79 Identities=24% Similarity=0.424 Sum_probs=46.1
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhccCCc--eeeEEEEEecccccc----------------cchhhHHHHHHHHHHHH
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKD--LVAHIVFVCCSRLSL----------------EKGPIIRQALSNFISEA 651 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~~~~~--~~~~~~~v~~s~l~~----------------~~~~~~~~~l~~~f~~a 651 (1134)
.+.++++||+|+|||++++.+++.+..... ....+++++|..... ............+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 356999999999999999999998742100 015667777754331 00011223333333333
Q ss_pred hhcCCeEEEEcccchhc
Q 001162 652 LDHAPSIVIFDNLDSII 668 (1134)
Q Consensus 652 ~~~~PsIL~IDEiD~L~ 668 (1134)
..+...+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 43444599999999973
No 451
>PRK12377 putative replication protein; Provisional
Probab=98.03 E-value=2.3e-05 Score=86.31 Aligned_cols=72 Identities=19% Similarity=0.338 Sum_probs=45.9
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHH--HHHHHHHHHHhhcCCeEEEEcccchh
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR--QALSNFISEALDHAPSIVIFDNLDSI 667 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~--~~l~~~f~~a~~~~PsIL~IDEiD~L 667 (1134)
.+++|+||||||||+||.++|+.+.... ..+.+++..++......... ....+.+... ....+|+|||++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g---~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKG---RSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 5799999999999999999999986433 34566666554432111100 0111222222 45679999999764
No 452
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.02 E-value=3.4e-05 Score=92.97 Aligned_cols=196 Identities=16% Similarity=0.227 Sum_probs=110.8
Q ss_pred cccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccccc
Q 001162 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635 (1134)
Q Consensus 556 l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~ 635 (1134)
+.|....+..+.+.+..+.. ....++++|.+||||+++++++...... ...+++.++|..+...
T Consensus 141 lig~s~~~~~~~~~i~~~~~-------------~~~~vli~ge~g~gk~~~a~~ih~~s~~---~~~~~i~~~c~~~~~~ 204 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVAP-------------SEATVLIHGDSGTGKELVARAIHASSAR---SEKPLVTLNCAALNES 204 (441)
T ss_pred eEecCHHHHHHHHHHhhccC-------------CCCeEEEEecCCCCHHHHHHHHHHcCCC---CCCCeeeeeCCCCCHH
Confidence 44555566666665533322 2356999999999999999999886432 2268999999976432
Q ss_pred chhhHHHHHHHHHHH---------------HhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--
Q 001162 636 KGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-- 698 (1134)
Q Consensus 636 ~~~~~~~~l~~~f~~---------------a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~-- 698 (1134)
. +.. .+|.. .....+++|||||+|.|.. .....|...++.-.
T Consensus 205 ~---~~~---~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~---------------~~q~~l~~~l~~~~~~ 263 (441)
T PRK10365 205 L---LES---ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP---------------MMQVRLLRAIQEREVQ 263 (441)
T ss_pred H---HHH---HhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCH---------------HHHHHHHHHHccCcEE
Confidence 1 111 11111 0112467999999999842 22233333333211
Q ss_pred cccccccCCCcEEEEEecCCCCCCChhhccCCCcc---------ccccCCCCCH--HHHHHHHHHHhhhc----c---cC
Q 001162 699 EKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFD---------FHVQLPAPAA--SERKAILEHEIQRR----S---LE 760 (1134)
Q Consensus 699 ~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~---------~~i~l~~P~~--eeR~~IL~~~l~~~----~---l~ 760 (1134)
..........++.+|++|+.. +. .+...|+|. ..+.+|+... ++...+++.++... + ..
T Consensus 264 ~~~~~~~~~~~~rii~~t~~~--~~-~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~ 340 (441)
T PRK10365 264 RVGSNQTISVDVRLIAATHRD--LA-AEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKG 340 (441)
T ss_pred eCCCCceeeeceEEEEeCCCC--HH-HHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCC
Confidence 000000011246788777652 11 112223332 2344444432 34445555555431 1 34
Q ss_pred CCHHHHHHHhhhcCCCChhhHHHHHHHHHHH
Q 001162 761 CSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1134)
Q Consensus 761 ~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~ 791 (1134)
++++.+..+....--.+.++|++++++++..
T Consensus 341 ~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 341 FTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred cCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 7889999998887656889999999998754
No 453
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.01 E-value=1.1e-05 Score=97.29 Aligned_cols=99 Identities=25% Similarity=0.359 Sum_probs=61.2
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhcc-----cccHH-------HHHHHHHHhhhcCCeEEE
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYI-----GASEQ-------AVRDIFSKATAAAPCLLF 942 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~~-----G~se~-------~v~~lf~~A~~~~P~VLf 942 (1134)
...++++|.+||||+++|+++.... +.+|+.++|..+..... |.... .....|..| ...+||
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ 238 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA---DGGTLF 238 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeEC---CCCEEE
Confidence 3569999999999999999998765 47899999987532211 11000 001122233 345999
Q ss_pred EcCcccccCCCCCCCCcchhhHHHhHhhhccccc--c-------cccEEEEEecCCC
Q 001162 943 FDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V-------LTGVFVFAATSRP 990 (1134)
Q Consensus 943 iDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~--~-------~~~v~vIatTn~p 990 (1134)
|||+|.|.+ .....++..++.-. . ..++-+|+||+.+
T Consensus 239 ldei~~l~~-----------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~ 284 (441)
T PRK10365 239 LDEIGDISP-----------MMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD 284 (441)
T ss_pred EeccccCCH-----------HHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCC
Confidence 999999843 34455555554211 0 1135677777663
No 454
>PRK08181 transposase; Validated
Probab=98.01 E-value=1.9e-05 Score=88.00 Aligned_cols=74 Identities=24% Similarity=0.403 Sum_probs=47.5
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhH-HHHHHHHHHHHhhcCCeEEEEcccchhc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII-RQALSNFISEALDHAPSIVIFDNLDSII 668 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~-~~~l~~~f~~a~~~~PsIL~IDEiD~L~ 668 (1134)
..+++|+||||||||+|+.+++.++.... ..+.+++..++........ ...+...+... ..+.+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g---~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENG---WRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcC---CceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc
Confidence 36799999999999999999999875332 4566676655543221110 01122233322 456799999998763
No 455
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.00 E-value=9.5e-05 Score=83.04 Aligned_cols=128 Identities=12% Similarity=0.174 Sum_probs=85.6
Q ss_pred CCCCceEEEcCCCCchhHHHHHHHHHcCCc-------E---------EEEeCcccchhc-ccc--cHHHHHHHHHHhh--
Q 001162 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------F---------ISVKGPELLNKY-IGA--SEQAVRDIFSKAT-- 934 (1134)
Q Consensus 876 ~~~~~vLL~GppGtGKT~lA~alA~~~~~~-------~---------i~i~~~el~~~~-~G~--se~~v~~lf~~A~-- 934 (1134)
+.+..+||+|| +||+++|+.+|..+-.. + ..-+-+|+.--. .|. .-+.+|++.+.+.
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 44567999996 68999999999865211 0 000112221100 021 2456777766553
Q ss_pred --hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCC
Q 001162 935 --AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFP 1012 (1134)
Q Consensus 935 --~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p 1012 (1134)
.+...|++||++|.+ .....|.||+.|+ ++..++++|.+|+.++.+-|.+++ |+ ..+.|+.
T Consensus 100 p~~~~~kV~II~~ad~m-----------~~~AaNaLLKtLE--EPp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~- 162 (290)
T PRK07276 100 GYEGKQQVFIIKDADKM-----------HVNAANSLLKVIE--EPQSEIYIFLLTNDENKVLPTIKS--RT-QIFHFPK- 162 (290)
T ss_pred cccCCcEEEEeehhhhc-----------CHHHHHHHHHHhc--CCCCCeEEEEEECChhhCchHHHH--cc-eeeeCCC-
Confidence 234479999999998 5678899999998 667778888899999999999999 55 4567765
Q ss_pred CHHHHHHHHH
Q 001162 1013 SPRERLDILK 1022 (1134)
Q Consensus 1013 ~~~er~~Il~ 1022 (1134)
+.++..+++.
T Consensus 163 ~~~~~~~~L~ 172 (290)
T PRK07276 163 NEAYLIQLLE 172 (290)
T ss_pred cHHHHHHHHH
Confidence 5555555554
No 456
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.99 E-value=4.6e-05 Score=91.73 Aligned_cols=132 Identities=19% Similarity=0.265 Sum_probs=75.6
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccc---cc---------------chh-hHHHHH-----
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS---LE---------------KGP-IIRQAL----- 644 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~---~~---------------~~~-~~~~~l----- 644 (1134)
...+++|+||||+|||++++.++..+..... -..+++..+. +. .-. .....+
T Consensus 209 ~G~~llliG~~GsGKTtLak~L~gllpp~~g----~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~ 284 (506)
T PRK09862 209 GGHNLLLIGPPGTGKTMLASRINGLLPDLSN----EEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAI 284 (506)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccCCCCCC----cEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCce
Confidence 3467999999999999999999987642211 1111111110 00 000 000000
Q ss_pred --HHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----cccccccCCCcEEEEEecCC
Q 001162 645 --SNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQS 718 (1134)
Q Consensus 645 --~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~V~vIattn~ 718 (1134)
...+..| ..++|||||++.+- ..+...|.+.|+.-. .......-..++.+|+|+|+
T Consensus 285 ~~pG~l~~A---~gGvLfLDEi~e~~---------------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP 346 (506)
T PRK09862 285 PGPGEISLA---HNGVLFLDELPEFE---------------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNP 346 (506)
T ss_pred ehhhHhhhc---cCCEEecCCchhCC---------------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecC
Confidence 0122222 34699999998763 145556666664322 11111112346899999997
Q ss_pred CC---------------------CCChhhccCCCccccccCCCCCHH
Q 001162 719 LE---------------------KIPQSLTSSGRFDFHVQLPAPAAS 744 (1134)
Q Consensus 719 ~~---------------------~Ld~aL~~~gRF~~~i~l~~P~~e 744 (1134)
.. .++..++. ||+.++.+++|+.+
T Consensus 347 ~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 347 SPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred ccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 42 36667777 99999999988643
No 457
>PRK06526 transposase; Provisional
Probab=97.99 E-value=9.3e-06 Score=89.97 Aligned_cols=74 Identities=19% Similarity=0.289 Sum_probs=45.0
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhh-HHHHHHHHHHHHhhcCCeEEEEcccchhc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPI-IRQALSNFISEALDHAPSIVIFDNLDSII 668 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~-~~~~l~~~f~~a~~~~PsIL~IDEiD~L~ 668 (1134)
+.+++|+||||||||+|+.+++.++.... ..+.++.+..+....... ..+.+...+... ..+.+|+|||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g---~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAG---HRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCC---CchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 46799999999999999999998875332 334445554432211100 001122222222 356799999998763
No 458
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=4.2e-05 Score=83.82 Aligned_cols=121 Identities=10% Similarity=0.073 Sum_probs=83.1
Q ss_pred CCCCceEEEcCCCCchhHHHHHHHHHcCCc--------------EEEEeCcccchhcc---cccHHHHHHHHHHhh----
Q 001162 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSLR--------------FISVKGPELLNKYI---GASEQAVRDIFSKAT---- 934 (1134)
Q Consensus 876 ~~~~~vLL~GppGtGKT~lA~alA~~~~~~--------------~i~i~~~el~~~~~---G~se~~v~~lf~~A~---- 934 (1134)
.++..+||+||.|+||..+|.++|+.+-.. +..-+-+|+.--+. .-..+.+|++.+...
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 355679999999999999999999866211 00011122211000 112345566555431
Q ss_pred -hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCC
Q 001162 935 -AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFP 1012 (1134)
Q Consensus 935 -~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p 1012 (1134)
.+...|++||++|.+ ...+.|.||+.++ ++..++++|..|+.++.+-|.+++ |+.. +.|+.+
T Consensus 85 e~~~~KV~II~~ae~m-----------~~~AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--RCq~-~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL-----------NKQSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--RCVQ-YVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhh-----------CHHHHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--heee-eecCCh
Confidence 234579999999998 5678899999998 677889999999999999999999 6543 456555
No 459
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.98 E-value=9.5e-05 Score=83.55 Aligned_cols=160 Identities=19% Similarity=0.313 Sum_probs=85.0
Q ss_pred CceEEEEcCCCccHHHHHHHHHHH--hccCCceeeEEEEEecccccc--------------c-----chhhHHHHHHHHH
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKS--LEHHKDLVAHIVFVCCSRLSL--------------E-----KGPIIRQALSNFI 648 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~--l~~~~~~~~~~~~v~~s~l~~--------------~-----~~~~~~~~l~~~f 648 (1134)
.+-+.|+|++|+|||+||+.+++. ...... .++.++++.-.. . ....... +...+
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~---~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~l 94 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFD---GVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEE-LQDQL 94 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCT---EEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHH-HHHHH
T ss_pred eEEEEEEcCCcCCcceeeeecccccccccccc---ccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 466999999999999999999987 333222 233444332110 0 1112222 22333
Q ss_pred HHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhcc
Q 001162 649 SEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTS 728 (1134)
Q Consensus 649 ~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~ 728 (1134)
.......+.+|+|||++... . ...+...+.... .+..+|.||.... +-..+..
T Consensus 95 ~~~L~~~~~LlVlDdv~~~~----------------~-~~~l~~~~~~~~---------~~~kilvTTR~~~-v~~~~~~ 147 (287)
T PF00931_consen 95 RELLKDKRCLLVLDDVWDEE----------------D-LEELREPLPSFS---------SGSKILVTTRDRS-VAGSLGG 147 (287)
T ss_dssp HHHHCCTSEEEEEEEE-SHH----------------H-H-------HCHH---------SS-EEEEEESCGG-GGTTHHS
T ss_pred hhhhccccceeeeeeecccc----------------c-cccccccccccc---------ccccccccccccc-ccccccc
Confidence 33334558999999997642 1 111211111111 0245666776533 2222221
Q ss_pred CCCccccccCCCCCHHHHHHHHHHHhhhcc---cCCCHHHHHHHhhhcCCCChhhHHHH
Q 001162 729 SGRFDFHVQLPAPAASERKAILEHEIQRRS---LECSDEILLDVASKCDGYDAYDLEIL 784 (1134)
Q Consensus 729 ~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~---l~~~~~~l~~la~~teG~s~~DL~~L 784 (1134)
-...++++..+.++-.++|........ ....++....++..|.|. |-.+..+
T Consensus 148 ---~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 148 ---TDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp ---CEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred ---cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 145789999999999999998865443 112234567888888874 5445444
No 460
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.97 E-value=0.00013 Score=79.69 Aligned_cols=133 Identities=22% Similarity=0.279 Sum_probs=76.3
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccC
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1134)
.+-.++||+|||||.+++.+|+.++ .+++.++|+..... .. +.++|.-+.. ..+.+.|||++.|-
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG------~~~~vfnc~~~~~~--~~----l~ril~G~~~-~GaW~cfdefnrl~-- 97 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALG------RFVVVFNCSEQMDY--QS----LSRILKGLAQ-SGAWLCFDEFNRLS-- 97 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--------EEEEETTSSS-H--HH----HHHHHHHHHH-HT-EEEEETCCCSS--
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhC------CeEEEecccccccH--HH----HHHHHHHHhh-cCchhhhhhhhhhh--
Confidence 4567899999999999999999999 88999999985532 23 3344433322 34689999999883
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhcccccc-------ccCCCcEEEEEecCC----CCCCChhhccCCCccccccCC
Q 001162 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKS-------SCGIGPIAFVASAQS----LEKIPQSLTSSGRFDFHVQLP 739 (1134)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~-------~~~~~~V~vIattn~----~~~Ld~aL~~~gRF~~~i~l~ 739 (1134)
.+....+.+.+..+.+.+..+... ..-.....+..|.|+ ...+|+.|+. .| +.+.+.
T Consensus 98 ---------~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~ 165 (231)
T PF12774_consen 98 ---------EEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMM 165 (231)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--
T ss_pred ---------HHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEe
Confidence 233334555555555544332211 001113445556653 3568888886 44 488898
Q ss_pred CCCHHHHHHHH
Q 001162 740 APAASERKAIL 750 (1134)
Q Consensus 740 ~P~~eeR~~IL 750 (1134)
.||.....+++
T Consensus 166 ~PD~~~I~ei~ 176 (231)
T PF12774_consen 166 VPDLSLIAEIL 176 (231)
T ss_dssp S--HHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 99987766665
No 461
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.97 E-value=4.2e-05 Score=84.03 Aligned_cols=72 Identities=14% Similarity=0.339 Sum_probs=47.3
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhH---HHHHHHHHHHHhhcCCeEEEEcccchh
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII---RQALSNFISEALDHAPSIVIFDNLDSI 667 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~---~~~l~~~f~~a~~~~PsIL~IDEiD~L 667 (1134)
.+++|+|+||||||+|+.++|..+.... ..+.+++..++........ ......+++.. ...++|+|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRG---KSVLIITVADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCC
Confidence 4799999999999999999999986432 4566777666543211111 01112333332 35679999999765
No 462
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.96 E-value=1.4e-05 Score=100.27 Aligned_cols=147 Identities=16% Similarity=0.083 Sum_probs=81.3
Q ss_pred CCCceEEEEcCCCccHHHHHHHHHHHhccCC-ceeeEEEEEecccccccchhhHHHHHHHHHHH---HhhcCCeEEEEcc
Q 001162 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHK-DLVAHIVFVCCSRLSLEKGPIIRQALSNFISE---ALDHAPSIVIFDN 663 (1134)
Q Consensus 588 ~~p~~vLL~GppGtGKTtLaralA~~l~~~~-~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~---a~~~~PsIL~IDE 663 (1134)
....||||+|+||||||.+|+++++...... .....+..++|....... +... ..+.-+ ......++++|||
T Consensus 490 RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~-d~~t---G~~~le~GaLvlAdgGtL~IDE 565 (915)
T PTZ00111 490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFN-ESDN---GRAMIQPGAVVLANGGVCCIDE 565 (915)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhc-cccc---CcccccCCcEEEcCCCeEEecc
Confidence 3445799999999999999999998543111 000122233333221100 0000 000000 0112346999999
Q ss_pred cchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----cccccccCCCcEEEEEecCCCC-------------CCChhh
Q 001162 664 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE-------------KIPQSL 726 (1134)
Q Consensus 664 iD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~V~vIattn~~~-------------~Ld~aL 726 (1134)
+|.+-. .....|.+.|+.-. ..........++.|||++|+.. .+++.|
T Consensus 566 idkms~---------------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~L 630 (915)
T PTZ00111 566 LDKCHN---------------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSL 630 (915)
T ss_pred hhhCCH---------------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHH
Confidence 999831 33344555554321 1111111223689999999852 367889
Q ss_pred ccCCCccccc-cCCCCCHHHHHHHHHHHhh
Q 001162 727 TSSGRFDFHV-QLPAPAASERKAILEHEIQ 755 (1134)
Q Consensus 727 ~~~gRF~~~i-~l~~P~~eeR~~IL~~~l~ 755 (1134)
++ ||+..+ -++.|+.+.=..|..+.+.
T Consensus 631 LS--RFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 631 FT--RFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred hh--hhcEEEEecCCCChHHHHHHHHHHHH
Confidence 99 998665 5577777665666555554
No 463
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.90 E-value=0.00016 Score=84.72 Aligned_cols=175 Identities=18% Similarity=0.219 Sum_probs=93.4
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCccc-------------chhcccccHHHHHHHHHHhh------------
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL-------------LNKYIGASEQAVRDIFSKAT------------ 934 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el-------------~~~~~G~se~~v~~lf~~A~------------ 934 (1134)
-+||+||+|||||+.++.+++++|..+++-.-+-. ...+++..-..+.....++.
T Consensus 112 iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~ 191 (634)
T KOG1970|consen 112 ILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDL 191 (634)
T ss_pred EEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhccccc
Confidence 47889999999999999999999988877652211 11111111122233334441
Q ss_pred hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcC------cCcccceee
Q 001162 935 AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLR------PGRLDRLLF 1008 (1134)
Q Consensus 935 ~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allr------pgRfd~~i~ 1008 (1134)
...|.+||+||+=..+.. + ..+.+...|.++-......-|++|.-+..++..++..+. ..|++ .|.
T Consensus 192 ~~~~~liLveDLPn~~~~---d----~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~Is 263 (634)
T KOG1970|consen 192 RTDKKLILVEDLPNQFYR---D----DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NIS 263 (634)
T ss_pred ccCceEEEeeccchhhhh---h----hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcc-eEe
Confidence 234669999998766543 1 223333344333222222334444333333443332222 12444 457
Q ss_pred cCCCCHHHHHHHHHHHHccCCCCCc----ccHHHHHHhccCCcHHHHHHHHHHHHHHHH
Q 001162 1009 CDFPSPRERLDILKVISRKLPLADD----VDLEAIAHMTEGFSGADLQALLSDAQLSAV 1063 (1134)
Q Consensus 1009 ~~~p~~~er~~Il~~~~~~~~~~~~----vd~~~La~~t~g~sg~dl~~l~~~A~~~a~ 1063 (1134)
|-+-...-....|+.+++....... -+...+-.+.. -+|+||+.++..-++-+.
T Consensus 264 FNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~-~s~GDIRsAInsLQlsss 321 (634)
T KOG1970|consen 264 FNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQ-GSGGDIRSAINSLQLSSS 321 (634)
T ss_pred ecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHH-hcCccHHHHHhHhhhhcc
Confidence 7776777777777776654432211 11223333333 357899987776666543
No 464
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.90 E-value=1.9e-05 Score=88.46 Aligned_cols=138 Identities=20% Similarity=0.328 Sum_probs=77.0
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHcC-Cc--EEEEeCcccchhcccccHHHHHHHHHHh-----------hhcCCeEEEE
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAACS-LR--FISVKGPELLNKYIGASEQAVRDIFSKA-----------TAAAPCLLFF 943 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~~-~~--~i~i~~~el~~~~~G~se~~v~~lf~~A-----------~~~~P~VLfi 943 (1134)
..++||+||+|||||++++..-..+. .. ...++.+.. .+...+..+++.. ..++.+|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 45799999999999999988776553 22 233444321 1222333333221 1234479999
Q ss_pred cCcccccCCCCCCCCcchhhHHHhHhhhccccc--------ccccEEEEEecCCCC---ccchhhcCcCcccceeecCCC
Q 001162 944 DEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--------VLTGVFVFAATSRPD---LLDAALLRPGRLDRLLFCDFP 1012 (1134)
Q Consensus 944 DEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~--------~~~~v~vIatTn~p~---~ld~allrpgRfd~~i~~~~p 1012 (1134)
||+..-.+.. ..+.-.-+++.+++.. .|.. .-.++.++||++.+. .+++.++| .| .++.++.|
T Consensus 107 DDlN~p~~d~--ygtq~~iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~p 180 (272)
T PF12775_consen 107 DDLNMPQPDK--YGTQPPIELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPYP 180 (272)
T ss_dssp ETTT-S---T--TS--HHHHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE----
T ss_pred cccCCCCCCC--CCCcCHHHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEecCC
Confidence 9998765432 1111122344444322 1211 223588888887432 37888887 55 47899999
Q ss_pred CHHHHHHHHHHHHcc
Q 001162 1013 SPRERLDILKVISRK 1027 (1134)
Q Consensus 1013 ~~~er~~Il~~~~~~ 1027 (1134)
+.++...|+..++..
T Consensus 181 ~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 181 SDESLNTIFSSILQS 195 (272)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhh
Confidence 999999999887764
No 465
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.88 E-value=5.2e-05 Score=87.03 Aligned_cols=72 Identities=22% Similarity=0.325 Sum_probs=46.5
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhh-H--HHHHHHHHHHHhhcCCeEEEEcccchh
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPI-I--RQALSNFISEALDHAPSIVIFDNLDSI 667 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~-~--~~~l~~~f~~a~~~~PsIL~IDEiD~L 667 (1134)
.+++|+||+|||||+|+.++|+++.... ..+++++...+....... . .......++.. ....+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g---~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG---KSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC---CeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCC
Confidence 6799999999999999999999986433 467778776654321110 0 00011112222 34579999999765
No 466
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.88 E-value=8e-05 Score=82.78 Aligned_cols=209 Identities=16% Similarity=0.196 Sum_probs=118.9
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s 630 (1134)
..|..+.+....+..++.+.+.+...+ ..+||.|.+||||-.+||++..... ....+++.++|.
T Consensus 201 ~~F~~~v~~S~~mk~~v~qA~k~AmlD-------------APLLI~GeTGTGKdLlAkaCH~~S~---R~~~pFlalNCA 264 (511)
T COG3283 201 SGFEQIVAVSPKMKHVVEQAQKLAMLD-------------APLLITGETGTGKDLLAKACHLASP---RHSKPFLALNCA 264 (511)
T ss_pred cchHHHhhccHHHHHHHHHHHHhhccC-------------CCeEEecCCCchHHHHHHHHhhcCc---ccCCCeeEeecC
Confidence 346677777788888887775543322 4489999999999999999877432 233789999998
Q ss_pred cccccchhh-H------HHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccc
Q 001162 631 RLSLEKGPI-I------RQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKS 703 (1134)
Q Consensus 631 ~l~~~~~~~-~------~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~ 703 (1134)
.+.....+. + .+--..+|+.|. .+-+|+|||..+. +..+.+++++|.+.- +......
T Consensus 265 ~lPe~~aEsElFG~apg~~gk~GffE~An---gGTVlLDeIgEmS-----------p~lQaKLLRFL~DGt--FRRVGee 328 (511)
T COG3283 265 SLPEDAAESELFGHAPGDEGKKGFFEQAN---GGTVLLDEIGEMS-----------PRLQAKLLRFLNDGT--FRRVGED 328 (511)
T ss_pred CCchhHhHHHHhcCCCCCCCccchhhhcc---CCeEEeehhhhcC-----------HHHHHHHHHHhcCCc--eeecCCc
Confidence 875432211 0 011123444443 3479999997763 333445555554321 1111111
Q ss_pred ccCCCcEEEEEecCCCC--CCChhhccCC---CccccccCCCCCHHHH----HHHHHH----Hhhhccc---CCCHHHHH
Q 001162 704 SCGIGPIAFVASAQSLE--KIPQSLTSSG---RFDFHVQLPAPAASER----KAILEH----EIQRRSL---ECSDEILL 767 (1134)
Q Consensus 704 ~~~~~~V~vIattn~~~--~Ld~aL~~~g---RF~~~i~l~~P~~eeR----~~IL~~----~l~~~~l---~~~~~~l~ 767 (1134)
-.-.-+|.||++|+..= .....-.|.. |.. ++.+..|...+| .-+.+. +..+.++ .++++.+.
T Consensus 329 ~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLN-VLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~ 407 (511)
T COG3283 329 HEVHVDVRVICATQVNLVELVQKGKFREDLFYRLN-VLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLT 407 (511)
T ss_pred ceEEEEEEEEecccccHHHHHhcCchHHHHHHHhh-eeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHH
Confidence 11123689999987521 1111111111 222 444444443333 222232 2333332 36777888
Q ss_pred HHhhhcCCCChhhHHHHHHHHHHHH
Q 001162 768 DVASKCDGYDAYDLEILVDRTVHAA 792 (1134)
Q Consensus 768 ~la~~teG~s~~DL~~Lv~~a~~~a 792 (1134)
.+..+..-.+-+.|++.+-+|+...
T Consensus 408 ~L~~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 408 VLTRYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred HHHHcCCCccHHHHHHHHHHHHHHh
Confidence 8888776667899999988887544
No 467
>PRK09183 transposase/IS protein; Provisional
Probab=97.87 E-value=3.5e-05 Score=85.81 Aligned_cols=76 Identities=22% Similarity=0.333 Sum_probs=48.0
Q ss_pred CCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchh-hHHHHHHHHHHHHhhcCCeEEEEcccch
Q 001162 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGP-IIRQALSNFISEALDHAPSIVIFDNLDS 666 (1134)
Q Consensus 588 ~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~-~~~~~l~~~f~~a~~~~PsIL~IDEiD~ 666 (1134)
....+++|+||||||||+|+.+++..+...+ ..+.++++..+...... .....+...+... ...+.+++|||++.
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G---~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~ 175 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAG---IKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGY 175 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEccccc
Confidence 3346799999999999999999988754322 44566666555422111 0111233344432 24678999999976
Q ss_pred h
Q 001162 667 I 667 (1134)
Q Consensus 667 L 667 (1134)
.
T Consensus 176 ~ 176 (259)
T PRK09183 176 L 176 (259)
T ss_pred C
Confidence 5
No 468
>PRK06921 hypothetical protein; Provisional
Probab=97.86 E-value=6.3e-05 Score=84.07 Aligned_cols=72 Identities=22% Similarity=0.260 Sum_probs=45.4
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccch
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDS 666 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~ 666 (1134)
..+++|+|++|+|||+|+.++|+++..... ..++++....+........ ..+...+.. .....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g--~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKG--VPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcC--ceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 467999999999999999999999864312 4566776554432211111 111222222 24567999999954
No 469
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=97.84 E-value=0.00017 Score=97.48 Aligned_cols=333 Identities=15% Similarity=0.222 Sum_probs=167.0
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHH---hhcCC----eEEEEcc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEA---LDHAP----SIVIFDN 663 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a---~~~~P----sIL~IDE 663 (1134)
..++++||+|+|||.++........... .+. ++.+...+. ......+...++.- .+..| .++|+||
T Consensus 128 k~~~~~g~~g~gk~~~~~~~~~~~~~~~---~~~--~~fs~~ts~--~~~q~~~~~~~~k~~~~~~~~~~~~~~~~f~dd 200 (1395)
T KOG3595|consen 128 KPVLLVGPTGTGKTVLVLSELRSLQDRE---VYL--LNFSSVTSS--ELLQEIIESKLDKRRSGNYGPPLGKKLVLFVDD 200 (1395)
T ss_pred CeEEEEcCCCCCeeeehHHHHHhcccch---heE--EeeeeeccH--HHHHHHHHHHHHHhcccCCCCCCCceeEEEEec
Confidence 5599999999999999988877654211 111 222222111 11111111111111 11222 3899999
Q ss_pred cchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCC----CCChhhccCCCccccccCC
Q 001162 664 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE----KIPQSLTSSGRFDFHVQLP 739 (1134)
Q Consensus 664 iD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~----~Ld~aL~~~gRF~~~i~l~ 739 (1134)
+..-. .+..+.+.. ..+.+.+.+....+......+...-++.++++++.+. .+++.+.+ .|. .+.+.
T Consensus 201 inmp~---~~~yg~q~~---~~~lrq~~e~~g~~~~~~~~~~~i~~i~~~~a~~~~~~gr~~i~~r~~r--~f~-~~~~~ 271 (1395)
T KOG3595|consen 201 INMPA---LDKYGDQPP---IELLRQMLEHGGFYDRKKSEWVEIENVQLVGAMNPPGGGRNDITERFLR--HFL-IVSLN 271 (1395)
T ss_pred cCCch---hhhcCCccH---HHHHHHHHHhceeecccccceeEEeeeEEEeecCCCCCccCcccHHHHH--Hee-eEeeC
Confidence 98754 233444332 2444444444433443334455566899999999632 45666665 454 67889
Q ss_pred CCCHHHHHHHHHHHhhhcccCCCHHH---HHHHhh------------hc-------CCCChhhH----------------
Q 001162 740 APAASERKAILEHEIQRRSLECSDEI---LLDVAS------------KC-------DGYDAYDL---------------- 781 (1134)
Q Consensus 740 ~P~~eeR~~IL~~~l~~~~l~~~~~~---l~~la~------------~t-------eG~s~~DL---------------- 781 (1134)
.|+.+....|+..++....- ..+.. ...++. .. .=|+.+|+
T Consensus 272 ~~~~~sl~~if~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~hyv~~lrd~~r~~~~i~~~~~~~~~ 350 (1395)
T KOG3595|consen 272 YPSQESLTQIFNTILTGHLR-FAPAFRTSIEPIVNASVDFYPKVQENFLPTPSKSHYVFNLRDLSRVVQGILLAVSEALL 350 (1395)
T ss_pred CCChhhHHHHHHHHHhcccC-ccHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCcceeeechhhhhhheeehcccCcHhhc
Confidence 99999999999887765422 11111 111111 11 11334443
Q ss_pred --HHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhccccceec---cccccccCCCCCCCCCCCChhHHHHHH
Q 001162 782 --EILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMR---DITKTSAEGGRSGWDDVGGLTDIQNAI 856 (1134)
Q Consensus 782 --~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~lr---~v~~~~~~~~~~~~~~i~gl~~~k~~l 856 (1134)
..+++-++|.+.+-+... .-...+.....+.+...+........+ .............|.++...+.+...+
T Consensus 351 ~~~~l~~~~~~e~~rv~~dr---lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~ 427 (1395)
T KOG3595|consen 351 TLEDLIRLWVHEAIRVFADR---LVDDEDRQWFDKKLQEVLLKLFEADSLQMPLLYGDFRSESHKIYEEVLSVELLRGVL 427 (1395)
T ss_pred cHHHHHHHHHHHHHHhhhhh---cccHHHHHHHHHHHHHHHHHHhhhhhhcCCceeeecccccccccCchHhHHHHHHHH
Confidence 344444455444322110 000011111122222222111111100 000000000013466666667666666
Q ss_pred HHHHhcCC----------------CchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhccc
Q 001162 857 KEMIELPS----------------KFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIG 920 (1134)
Q Consensus 857 ~~~i~~~~----------------~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~G 920 (1134)
........ .|-....+.-..++++.++.|-.|+||+++.+..+...+..++.+.....++. .
T Consensus 428 ~~~l~~~~~~~~~~~~lvlf~~~~~h~~ri~ril~~~~g~~llvgv~g~gkqsl~r~~~~~~~~~~fq~~~~~~y~~--~ 505 (1395)
T KOG3595|consen 428 EAYLKQFNIEEIRPMHLVLFRDAIEHVLRIDRILRQPRGHALLVGVGGSGKQSLTRLAAFINGLSVFQIEITRSYNI--E 505 (1395)
T ss_pred HHHHHHHhhhccCCCceeeeHHHhhhhhhhHHHhcCCCccEEEeecCCCCcccHHHHHHhhccccceeeeccccCcH--H
Confidence 55544221 01111111223578899999999999999999999999999888876554321 1
Q ss_pred ccHHHHHHHHHHhhhcC-CeEEEEcC
Q 001162 921 ASEQAVRDIFSKATAAA-PCLLFFDE 945 (1134)
Q Consensus 921 ~se~~v~~lf~~A~~~~-P~VLfiDE 945 (1134)
.-...++.+...|...+ ..++.++|
T Consensus 506 ~~~~dl~~~~r~~g~~~~~~~f~~~~ 531 (1395)
T KOG3595|consen 506 DFREDLKAILRKAGLKNKETVFILTD 531 (1395)
T ss_pred HHHHHHHHHHHHhccCCCceEEeech
Confidence 22345556666653333 33444555
No 470
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.84 E-value=8.4e-05 Score=91.30 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=83.6
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcC--CcEEEEeCcccchhccccc--HHHH--------HHHHHHhhhcCCeEEEEcCc
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPELLNKYIGAS--EQAV--------RDIFSKATAAAPCLLFFDEF 946 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~--~~~i~i~~~el~~~~~G~s--e~~v--------~~lf~~A~~~~P~VLfiDEi 946 (1134)
.|+++.|+.||||++++++++..+. .+|+.+-.+--....+|.- +..+ ..++..|.. .|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 5899999999999999999999885 4777665443333334432 1111 122333333 39999999
Q ss_pred ccccCCCCCCCCcchhhHHHhHhhhcccc-----------cccccEEEEEecCCC---CccchhhcCcCcccceeecCCC
Q 001162 947 DSIAPKRGHDNTGVTDRVVNQFLTELDGV-----------EVLTGVFVFAATSRP---DLLDAALLRPGRLDRLLFCDFP 1012 (1134)
Q Consensus 947 d~l~~~r~~~~~~~~~rv~~~lL~~ld~~-----------~~~~~v~vIatTn~p---~~ld~allrpgRfd~~i~~~~p 1012 (1134)
..+ .+.+++.|+..|+.- ..-.++++|++-|.. ..+.++++. ||+..+.++.+
T Consensus 103 n~~-----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~ 169 (584)
T PRK13406 103 ERL-----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGL 169 (584)
T ss_pred ccC-----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCC
Confidence 887 567899999988631 111357788763321 228889999 99999999988
Q ss_pred CHHH
Q 001162 1013 SPRE 1016 (1134)
Q Consensus 1013 ~~~e 1016 (1134)
+..+
T Consensus 170 ~~~~ 173 (584)
T PRK13406 170 ALRD 173 (584)
T ss_pred ChHH
Confidence 7654
No 471
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.82 E-value=3.5e-05 Score=80.86 Aligned_cols=73 Identities=25% Similarity=0.392 Sum_probs=43.9
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhH-HHHHHHHHHHHhhcCCeEEEEcccch
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII-RQALSNFISEALDHAPSIVIFDNLDS 666 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~-~~~l~~~f~~a~~~~PsIL~IDEiD~ 666 (1134)
.+.+++|+||+|||||+||.++++++-... ..+.+++..++...-.... .....+.+... ....+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g---~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l--~~~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKG---YSVLFITASDLLDELKQSRSDGSYEELLKRL--KRVDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEEEHHHHHHHHHCCHCCTTHCHHHHHH--HTSSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCC---cceeEeecCceeccccccccccchhhhcCcc--ccccEecccccce
Confidence 347899999999999999999999875433 5567777766532111000 00112222222 3457999999954
No 472
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.82 E-value=0.00013 Score=89.71 Aligned_cols=200 Identities=14% Similarity=0.128 Sum_probs=113.7
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEE----ecccccccchhhHHHHHHHH---HHH--HhhcCCeEEEE
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV----CCSRLSLEKGPIIRQALSNF---ISE--ALDHAPSIVIF 661 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v----~~s~l~~~~~~~~~~~l~~~---f~~--a~~~~PsIL~I 661 (1134)
+||||-|++|||||+++++++..+... .+++.+ .-..+.|. .++...+..- ++. ......+||||
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~----~p~r~~p~~~t~~~L~Gg--~Dl~~~l~~g~~~~~pGlla~Ah~GvL~l 99 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAG----TPLRRLPPGIADDRLLGG--LDLAATLRAGRPVAQRGLLAEADGGVLVL 99 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCC----CCcccCCCCCcHHHccCC--chHHhHhhcCCcCCCCCceeeccCCEEEe
Confidence 679999999999999999999987532 122222 22233332 2222222110 000 00112369999
Q ss_pred cccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----cccccccCCCcEEEEEecCCC---CCCChhhccCCCccc
Q 001162 662 DNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSL---EKIPQSLTSSGRFDF 734 (1134)
Q Consensus 662 DEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~V~vIattn~~---~~Ld~aL~~~gRF~~ 734 (1134)
||+..+- ..+...|.+-|+.-. .......-..++++|++.+.. ..+++.++. ||+.
T Consensus 100 De~n~~~---------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l 162 (584)
T PRK13406 100 AMAERLE---------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAF 162 (584)
T ss_pred cCcccCC---------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEE
Confidence 9998773 156677777776421 111112223468899974432 348888998 9999
Q ss_pred cccCCCCCHHHH-------HHHHHHHhhhcccCCCHHHHHHHhhhcC--CC-ChhhHHHHHHHHHHHHhcccccCCCccc
Q 001162 735 HVQLPAPAASER-------KAILEHEIQRRSLECSDEILLDVASKCD--GY-DAYDLEILVDRTVHAAVGRYLHSDSSFE 804 (1134)
Q Consensus 735 ~i~l~~P~~eeR-------~~IL~~~l~~~~l~~~~~~l~~la~~te--G~-s~~DL~~Lv~~a~~~a~~r~~~~~~~~~ 804 (1134)
++.++.++..+. .+|....-.-....+++..+.+++..+. |. +.+-...+++-|...|.-+
T Consensus 163 ~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~--------- 233 (584)
T PRK13406 163 HLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALA--------- 233 (584)
T ss_pred EEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHc---------
Confidence 999998876542 2333322111356678888777665542 33 4455555555444444322
Q ss_pred cccccccchhhhHhhhhccc
Q 001162 805 KHIKPTLVRDDFSQAMHEFL 824 (1134)
Q Consensus 805 ~~~~~~lt~eDf~~Al~~~~ 824 (1134)
+...++.+|+..|..-..
T Consensus 234 --Gr~~V~~~dv~~Aa~lvL 251 (584)
T PRK13406 234 --GRTAVEEEDLALAARLVL 251 (584)
T ss_pred --CCCCCCHHHHHHHHHHHH
Confidence 234577777776654433
No 473
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.82 E-value=0.0001 Score=79.49 Aligned_cols=81 Identities=22% Similarity=0.269 Sum_probs=54.0
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccch-----------------------hhHHH
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKG-----------------------PIIRQ 642 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~-----------------------~~~~~ 642 (1134)
|++...-++|+||||||||+++..++....... ..++++++..+..... .....
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g---~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 84 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQG---KKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGV 84 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHH
Confidence 566666699999999999999999887654322 4677888765211110 11112
Q ss_pred HHHHHHHHHhhcCCeEEEEcccchhcc
Q 001162 643 ALSNFISEALDHAPSIVIFDNLDSIIS 669 (1134)
Q Consensus 643 ~l~~~f~~a~~~~PsIL~IDEiD~L~~ 669 (1134)
.+..+...+.++.+++|+||-+..+..
T Consensus 85 ~~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 85 AIQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 244444445566889999999998863
No 474
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.78 E-value=0.00068 Score=73.20 Aligned_cols=176 Identities=20% Similarity=0.328 Sum_probs=104.3
Q ss_pred eEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccc-------------h---h-hHHHHHHHHHHHHh-h
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK-------------G---P-IIRQALSNFISEAL-D 653 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~-------------~---~-~~~~~l~~~f~~a~-~ 653 (1134)
-+.++|+-|||||++.|++...+..+.. .+++++.-.+.... . . ..++.-+.+..... .
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~---~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g 129 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQV---AVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKG 129 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCce---EEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhC
Confidence 4889999999999999987777653332 22555543322110 0 1 11222222222222 2
Q ss_pred cCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccC----
Q 001162 654 HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSS---- 729 (1134)
Q Consensus 654 ~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~---- 729 (1134)
..|-++++||++.+.. +.. .....|.+..+.... .-.+++||-. .+.+.++.+
T Consensus 130 ~r~v~l~vdEah~L~~-----------~~l-e~Lrll~nl~~~~~~-------~l~ivL~Gqp----~L~~~lr~~~l~e 186 (269)
T COG3267 130 KRPVVLMVDEAHDLND-----------SAL-EALRLLTNLEEDSSK-------LLSIVLIGQP----KLRPRLRLPVLRE 186 (269)
T ss_pred CCCeEEeehhHhhhCh-----------hHH-HHHHHHHhhcccccC-------ceeeeecCCc----ccchhhchHHHHh
Confidence 4568999999998852 111 222223222222211 1124555432 233333321
Q ss_pred --CCccccccCCCCCHHHHHHHHHHHhhhcccC---CCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhc
Q 001162 730 --GRFDFHVQLPAPAASERKAILEHEIQRRSLE---CSDEILLDVASKCDGYDAYDLEILVDRTVHAAVG 794 (1134)
Q Consensus 730 --gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~---~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~ 794 (1134)
.|+...++++|.+.++-...++..++..+.. ++++.+..+.....|| |+-+.+++..|...++.
T Consensus 187 ~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~-P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 187 LEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGI-PRLINNLATLALDAAYS 255 (269)
T ss_pred hhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccc-hHHHHHHHHHHHHHHHH
Confidence 2787668999999999999999988875432 5777888899888984 66777777777766653
No 475
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.78 E-value=6.3e-05 Score=76.71 Aligned_cols=72 Identities=18% Similarity=0.285 Sum_probs=48.3
Q ss_pred eEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhc----------------------ccc--cHHHHHHHHHHh
Q 001162 881 VLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY----------------------IGA--SEQAVRDIFSKA 933 (1134)
Q Consensus 881 vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~----------------------~G~--se~~v~~lf~~A 933 (1134)
++++||||+|||+++..++... +.+++.++........ .+. .....+..+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 5667766664432210 011 111122334555
Q ss_pred hhcCCeEEEEcCcccccCC
Q 001162 934 TAAAPCLLFFDEFDSIAPK 952 (1134)
Q Consensus 934 ~~~~P~VLfiDEid~l~~~ 952 (1134)
....|.+++|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 6677889999999998654
No 476
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.78 E-value=0.00033 Score=76.88 Aligned_cols=195 Identities=18% Similarity=0.205 Sum_probs=107.8
Q ss_pred cccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEE-EEEeccccc-
Q 001162 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHI-VFVCCSRLS- 633 (1134)
Q Consensus 556 l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~-~~v~~s~l~- 633 (1134)
|.|.--+.+.|++.++..+.... -..|--+=|+|++||||..+++.||+.+.........+ .++....+.
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~--------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~ 155 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPN--------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPH 155 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCC--------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCC
Confidence 34566677777777766543221 12234466999999999999999999876433221111 111111221
Q ss_pred ccchhhHHHHHHHH-HHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEE
Q 001162 634 LEKGPIIRQALSNF-ISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAF 712 (1134)
Q Consensus 634 ~~~~~~~~~~l~~~-f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~v 712 (1134)
..+.+.-+..++.+ .+.+...+.+++++||+|+|-+ .+.+.+...+|.+....+.. ...-++
T Consensus 156 ~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~---------------gLld~lkpfLdyyp~v~gv~--frkaIF 218 (344)
T KOG2170|consen 156 ASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPP---------------GLLDVLKPFLDYYPQVSGVD--FRKAIF 218 (344)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCH---------------hHHHHHhhhhcccccccccc--ccceEE
Confidence 22223333333333 3344456778999999999852 67777777777554322111 123455
Q ss_pred EEecCCCC-----------------------CCChhh-----------------ccCCCccccccCCCCCHHHHHHHHHH
Q 001162 713 VASAQSLE-----------------------KIPQSL-----------------TSSGRFDFHVQLPAPAASERKAILEH 752 (1134)
Q Consensus 713 Iattn~~~-----------------------~Ld~aL-----------------~~~gRF~~~i~l~~P~~eeR~~IL~~ 752 (1134)
|.-+|.-. ++.+.| .+..+++..|.|.|.++.....-++.
T Consensus 219 IfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~ 298 (344)
T KOG2170|consen 219 IFLSNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRA 298 (344)
T ss_pred EEEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHH
Confidence 65555311 111111 11224455566666666666666666
Q ss_pred HhhhcccCCCHHHHHHHhhhcCC
Q 001162 753 EIQRRSLECSDEILLDVASKCDG 775 (1134)
Q Consensus 753 ~l~~~~l~~~~~~l~~la~~teG 775 (1134)
.+.++++..+.+.++.++....-
T Consensus 299 el~~rg~~~d~~~~erva~~l~f 321 (344)
T KOG2170|consen 299 ELRKRGLAPDQDFVERVANSLSF 321 (344)
T ss_pred HHHhcccccchHHHHHHHHhhcc
Confidence 66666665566666666655443
No 477
>PRK06851 hypothetical protein; Provisional
Probab=97.78 E-value=0.0003 Score=81.32 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=28.8
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCc
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGP 912 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~ 912 (1134)
+-++|.|+||||||++++.++.++ |..+...-|+
T Consensus 215 ~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~ 251 (367)
T PRK06851 215 NRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCG 251 (367)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 358999999999999999999877 7777777775
No 478
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.75 E-value=0.00018 Score=78.49 Aligned_cols=63 Identities=27% Similarity=0.380 Sum_probs=50.0
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcccccHHHHHHHHHHh-hhcCCeEEEEcCcccc
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKA-TAAAPCLLFFDEFDSI 949 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~G~se~~v~~lf~~A-~~~~P~VLfiDEid~l 949 (1134)
.+-.++||+|||||.+++.+|+.+|..++..+|++-. ....+.++|.=+ ..+ +.+.|||+++|
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~------~~~~l~ril~G~~~~G--aW~cfdefnrl 96 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM------DYQSLSRILKGLAQSG--AWLCFDEFNRL 96 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHHT---EEEEETCCCS
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc------cHHHHHHHHHHHhhcC--chhhhhhhhhh
Confidence 4677899999999999999999999999999999854 345677777644 444 69999999998
No 479
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.72 E-value=7.2e-05 Score=71.68 Aligned_cols=23 Identities=35% Similarity=0.725 Sum_probs=20.6
Q ss_pred eEEEcCCCCchhHHHHHHHHHcC
Q 001162 881 VLLYGPPGCGKTHIVGAAAAACS 903 (1134)
Q Consensus 881 vLL~GppGtGKT~lA~alA~~~~ 903 (1134)
|.|+||||+|||++|+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998774
No 480
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.72 E-value=0.00015 Score=73.85 Aligned_cols=74 Identities=28% Similarity=0.420 Sum_probs=46.6
Q ss_pred EEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccccc------------------------chhhHHHHHHHHH
Q 001162 593 ILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE------------------------KGPIIRQALSNFI 648 (1134)
Q Consensus 593 vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~------------------------~~~~~~~~l~~~f 648 (1134)
++|+||||+|||++++.++..+.... ..+.++++...... .............
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~---~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKG---GKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAE 78 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcC---CEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHH
Confidence 78999999999999999999875422 34555554322110 0011111122233
Q ss_pred HHHhhcCCeEEEEcccchhcc
Q 001162 649 SEALDHAPSIVIFDNLDSIIS 669 (1134)
Q Consensus 649 ~~a~~~~PsIL~IDEiD~L~~ 669 (1134)
..+....|.+++|||+..+..
T Consensus 79 ~~~~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 79 RLRERGGDDLIILDELTRLVR 99 (165)
T ss_pred HHHhCCCCEEEEEEcHHHHHH
Confidence 445556789999999998863
No 481
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.71 E-value=0.0001 Score=84.01 Aligned_cols=74 Identities=16% Similarity=0.239 Sum_probs=46.3
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHH-HHHHHHHHHHhhcCCeEEEEcccchh
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR-QALSNFISEALDHAPSIVIFDNLDSI 667 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~-~~l~~~f~~a~~~~PsIL~IDEiD~L 667 (1134)
...|++|+||+|||||+|+.++|+++.... ..+.++....+...-..... ..+...+... ....+|+|||+..-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g---~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKG---VSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 346899999999999999999999986433 34555555544322111110 1122333332 35679999999653
No 482
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.70 E-value=0.0016 Score=76.61 Aligned_cols=51 Identities=27% Similarity=0.401 Sum_probs=34.6
Q ss_pred ccccchhhHHHHHHHHHH--hcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 555 SLSWMGTTASDVINRIKV--LLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~--ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
+|.-...-++++.+.+.. ...+ ....+-+||+||+||||||.++.++++++
T Consensus 83 eLAVHkkKI~eVk~WL~~~~~~~~----------~l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 83 ELAVHKKKISEVKQWLKQVAEFTP----------KLGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred HHhhhHHhHHHHHHHHHHHHHhcc----------CCCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 333345566677666652 1111 11123489999999999999999999988
No 483
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.0012 Score=74.76 Aligned_cols=147 Identities=14% Similarity=0.120 Sum_probs=91.8
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCC-------ceeeEEEEEecccccccchhhHHHHHHHHHHHHh----h-cCCeE
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHK-------DLVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----D-HAPSI 658 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~-------~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~----~-~~PsI 658 (1134)
..+||+|+.|.||+.+++.+++.+-... .....+..++... ..-..+. ++++.+... . ....|
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g-~~i~vd~----Ir~l~~~~~~~~~~~~~~Kv 93 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD-KDLSKSE----FLSAINKLYFSSFVQSQKKI 93 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC-CcCCHHH----HHHHHHHhccCCcccCCceE
Confidence 5589999999999999999999973211 1111233333111 1112223 334444332 1 24569
Q ss_pred EEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccC
Q 001162 659 VIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQL 738 (1134)
Q Consensus 659 L~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l 738 (1134)
++||++|.+. ....+.|+..+++... .+++|..|+.++.+-+.+++ |.. .++|
T Consensus 94 vII~~~e~m~---------------~~a~NaLLK~LEEPp~---------~t~~il~~~~~~kll~TI~S--Rc~-~~~f 146 (299)
T PRK07132 94 LIIKNIEKTS---------------NSLLNALLKTIEEPPK---------DTYFLLTTKNINKVLPTIVS--RCQ-VFNV 146 (299)
T ss_pred EEEecccccC---------------HHHHHHHHHHhhCCCC---------CeEEEEEeCChHhChHHHHh--CeE-EEEC
Confidence 9999998874 1345567777776443 36677667677889899888 654 8899
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCC
Q 001162 739 PAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG 775 (1134)
Q Consensus 739 ~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG 775 (1134)
.+++.++..+.|... + ++++....+|..+.|
T Consensus 147 ~~l~~~~l~~~l~~~----~--~~~~~a~~~a~~~~~ 177 (299)
T PRK07132 147 KEPDQQKILAKLLSK----N--KEKEYNWFYAYIFSN 177 (299)
T ss_pred CCCCHHHHHHHHHHc----C--CChhHHHHHHHHcCC
Confidence 999999888776542 2 444544455555554
No 484
>PF05729 NACHT: NACHT domain
Probab=97.68 E-value=0.00029 Score=72.16 Aligned_cols=142 Identities=13% Similarity=0.175 Sum_probs=71.7
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCC---------cEEEEeCcccchh------------cccccHHHHHHHH-HHhhhcC
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSL---------RFISVKGPELLNK------------YIGASEQAVRDIF-SKATAAA 937 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~---------~~i~i~~~el~~~------------~~G~se~~v~~lf-~~A~~~~ 937 (1134)
-++++|+||+|||++++.++..+.. -++.+.+.++... ........+...+ ..+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 3789999999999999999976621 1233333332110 0111111222212 2234455
Q ss_pred CeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHH
Q 001162 938 PCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRER 1017 (1134)
Q Consensus 938 P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er 1017 (1134)
..+|+||.+|.+...............+..++.. .....- -++| |+. +..... +.+...-...+.+++.+.+++
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~-~lii-t~r-~~~~~~-~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ--ALPPGV-KLII-TSR-PRAFPD-LRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhh--ccCCCC-eEEE-EEc-CChHHH-HHHhcCCCcEEEECCCCHHHH
Confidence 6799999999996532210011112223333322 011222 2333 332 222211 222001115678889999999
Q ss_pred HHHHHHHHcc
Q 001162 1018 LDILKVISRK 1027 (1134)
Q Consensus 1018 ~~Il~~~~~~ 1027 (1134)
.++++.+++.
T Consensus 156 ~~~~~~~f~~ 165 (166)
T PF05729_consen 156 KQYLRKYFSN 165 (166)
T ss_pred HHHHHHHhhc
Confidence 9999887653
No 485
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.66 E-value=0.0014 Score=78.60 Aligned_cols=31 Identities=32% Similarity=0.324 Sum_probs=25.4
Q ss_pred CCCCceEEEEcCCCccHHHHHHHHHHHhccC
Q 001162 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (1134)
Q Consensus 587 ~~~p~~vLL~GppGtGKTtLaralA~~l~~~ 617 (1134)
+.+..-+=|.|.+|||||++++++...+...
T Consensus 32 v~~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 32 VEPGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 4445558899999999999999999987644
No 486
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.00015 Score=80.48 Aligned_cols=75 Identities=21% Similarity=0.358 Sum_probs=47.4
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHH-HHHHHHHHHhhcCCeEEEEcccchh
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ-ALSNFISEALDHAPSIVIFDNLDSI 667 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~-~l~~~f~~a~~~~PsIL~IDEiD~L 667 (1134)
.+.+++|+||||+|||+||-|++.++. ..+ ..+.++...++...-...... .....+... -....+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g--~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAG--ISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcC--CeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCc
Confidence 457899999999999999999999987 333 567777766654322111110 111111110 134569999999664
No 487
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.65 E-value=0.0004 Score=77.38 Aligned_cols=98 Identities=24% Similarity=0.382 Sum_probs=70.1
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchh-----cccccH--HHHHHHHHHhhhcCCeEEEEcCccc
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK-----YIGASE--QAVRDIFSKATAAAPCLLFFDEFDS 948 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~-----~~G~se--~~v~~lf~~A~~~~P~VLfiDEid~ 948 (1134)
..+|+.|.+||||-.+|++-.... ..+|+.+||+.+-.. ..|... +.-..+|+.|.++ -+|+|||..
T Consensus 228 APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgE 304 (511)
T COG3283 228 APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGE 304 (511)
T ss_pred CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhh
Confidence 359999999999999999887655 589999999765321 122221 3345789998877 889999988
Q ss_pred ccCCCCCCCCcchhhHHHhHhhhcccc---------cccccEEEEEecCCC
Q 001162 949 IAPKRGHDNTGVTDRVVNQFLTELDGV---------EVLTGVFVFAATSRP 990 (1134)
Q Consensus 949 l~~~r~~~~~~~~~rv~~~lL~~ld~~---------~~~~~v~vIatTn~p 990 (1134)
+ ..++...||..|..- +..-.|-||+||..+
T Consensus 305 m-----------Sp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~n 344 (511)
T COG3283 305 M-----------SPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVN 344 (511)
T ss_pred c-----------CHHHHHHHHHHhcCCceeecCCcceEEEEEEEEeccccc
Confidence 8 446777777776421 112248899999764
No 488
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.63 E-value=0.00014 Score=89.45 Aligned_cols=141 Identities=23% Similarity=0.301 Sum_probs=76.6
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccc--ccchhhHHHHH-HHHHHHHh---hcCCeEEEEccc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS--LEKGPIIRQAL-SNFISEAL---DHAPSIVIFDNL 664 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~--~~~~~~~~~~l-~~~f~~a~---~~~PsIL~IDEi 664 (1134)
-||||.|.||||||.|.+.+++.+-. -++.+...-. |-.....+... .+|.-+|. -..++|+.|||+
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~aPr-------~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEf 392 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLAPR-------GVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEF 392 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhCCc-------eEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEec
Confidence 57999999999999999999987541 2233222111 11111111100 01111111 134679999999
Q ss_pred chhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----cccccccCCCcEEEEEecCCCC-------------CCChhhc
Q 001162 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE-------------KIPQSLT 727 (1134)
Q Consensus 665 D~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~V~vIattn~~~-------------~Ld~aL~ 727 (1134)
|++- + .-...+.+.|+... ...-.........++|++|+.. .+++.|+
T Consensus 393 dKm~----~-----------~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lL 457 (682)
T COG1241 393 DKMN----E-----------EDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLL 457 (682)
T ss_pred cCCC----h-----------HHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHH
Confidence 9873 1 22334445555321 1110011112467888998754 3678899
Q ss_pred cCCCccccccC-CCCCHHHHHHHHHHHhh
Q 001162 728 SSGRFDFHVQL-PAPAASERKAILEHEIQ 755 (1134)
Q Consensus 728 ~~gRF~~~i~l-~~P~~eeR~~IL~~~l~ 755 (1134)
+ |||..|-+ ..|+.+.-..|..+.+.
T Consensus 458 S--RFDLifvl~D~~d~~~D~~ia~hil~ 484 (682)
T COG1241 458 S--RFDLIFVLKDDPDEEKDEEIAEHILD 484 (682)
T ss_pred h--hCCeeEEecCCCCccchHHHHHHHHH
Confidence 9 99977644 56666544444444433
No 489
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.61 E-value=0.00037 Score=77.45 Aligned_cols=141 Identities=18% Similarity=0.282 Sum_probs=79.4
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccc-------------------ccchhhHHHHHHHHHHHH
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS-------------------LEKGPIIRQALSNFISEA 651 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~-------------------~~~~~~~~~~l~~~f~~a 651 (1134)
..+++.||.|+|||++....... .+..+...-++.+|..-.. ....+.+...+..++...
T Consensus 50 nsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L 128 (408)
T KOG2228|consen 50 NSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEAL 128 (408)
T ss_pred CceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHH
Confidence 56999999999999997655544 2222222233333332111 111122223333333333
Q ss_pred hh-----cCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCC---CC
Q 001162 652 LD-----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IP 723 (1134)
Q Consensus 652 ~~-----~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~---Ld 723 (1134)
.. ..+-|+++||+|.+++- .. +. .+.+++|-.... ..|+.+||.|.+.+- +.
T Consensus 129 ~~~~~~t~~~ViFIldEfDlf~~h----------~r-Qt---llYnlfDisqs~------r~Piciig~Ttrld~lE~LE 188 (408)
T KOG2228|consen 129 KKGDETTSGKVIFILDEFDLFAPH----------SR-QT---LLYNLFDISQSA------RAPICIIGVTTRLDILELLE 188 (408)
T ss_pred hcCCCCCCceEEEEeehhhccccc----------hh-hH---HHHHHHHHHhhc------CCCeEEEEeeccccHHHHHH
Confidence 22 12346777999998731 11 12 344455543321 237999999988665 45
Q ss_pred hhhccCCCcccc-ccC-CCCCHHHHHHHHHHHh
Q 001162 724 QSLTSSGRFDFH-VQL-PAPAASERKAILEHEI 754 (1134)
Q Consensus 724 ~aL~~~gRF~~~-i~l-~~P~~eeR~~IL~~~l 754 (1134)
....+ ||... |.+ |....++...|++..+
T Consensus 189 KRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 189 KRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 67777 99866 444 4445788888888776
No 490
>PHA00729 NTP-binding motif containing protein
Probab=97.57 E-value=0.00014 Score=78.44 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=23.1
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCC
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSL 904 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~ 904 (1134)
+++++|+||||||++|.++|..++.
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~ 43 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFW 43 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 7999999999999999999998763
No 491
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.57 E-value=4.1e-05 Score=88.88 Aligned_cols=140 Identities=22% Similarity=0.305 Sum_probs=75.1
Q ss_pred CCCCCceEEEcCCCCchhHHHHHHHHHcCCc-EEEEeCcccch-------hcccccHHHHHHHHHHhhhcCCeEEEEcCc
Q 001162 875 LRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-FISVKGPELLN-------KYIGASEQAVRDIFSKATAAAPCLLFFDEF 946 (1134)
Q Consensus 875 ~~~~~~vLL~GppGtGKT~lA~alA~~~~~~-~i~i~~~el~~-------~~~G~se~~v~~lf~~A~~~~P~VLfiDEi 946 (1134)
..+++|+.|||++|+|||+|.-++...+... -..+.-.+++. .+.|.. ..+..+.+.... .-.+|+|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~-~~l~~va~~l~~-~~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQD-DPLPQVADELAK-ESRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCC-ccHHHHHHHHHh-cCCEEEEeee
Confidence 4568899999999999999999998877531 11111111111 111111 122233222222 2249999999
Q ss_pred ccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCC-CccchhhcCcCcccceeecCCCCHHHHHHHHHHHH
Q 001162 947 DSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP-DLLDAALLRPGRLDRLLFCDFPSPRERLDILKVIS 1025 (1134)
Q Consensus 947 d~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p-~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~ 1025 (1134)
+---. ...-++..|+..| -..++++|+|+|++ +.|-+.=+.+.||-. -.++++..+
T Consensus 137 ~V~Di--------aDAmil~rLf~~l----~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp-----------~I~~l~~~~ 193 (362)
T PF03969_consen 137 QVTDI--------ADAMILKRLFEAL----FKRGVVLVATSNRPPEDLYKNGLQRERFLP-----------FIDLLKRRC 193 (362)
T ss_pred eccch--------hHHHHHHHHHHHH----HHCCCEEEecCCCChHHHcCCcccHHHHHH-----------HHHHHHhce
Confidence 75311 1223444555444 13679999999984 444322222123321 145566666
Q ss_pred ccCCCCCcccHHHH
Q 001162 1026 RKLPLADDVDLEAI 1039 (1134)
Q Consensus 1026 ~~~~~~~~vd~~~L 1039 (1134)
.-+.++..+|....
T Consensus 194 ~vv~ld~~~DyR~~ 207 (362)
T PF03969_consen 194 DVVELDGGVDYRRR 207 (362)
T ss_pred EEEEecCCCchhhh
Confidence 66666666665443
No 492
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.55 E-value=0.00028 Score=84.48 Aligned_cols=171 Identities=16% Similarity=0.231 Sum_probs=86.6
Q ss_pred ccccchhhHHHHHHHHHHhcCCCchhhhhhcC-CCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccc-
Q 001162 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYH-LPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL- 632 (1134)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~-~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l- 632 (1134)
++.|++..+..++=+| +.-. ...+...| ....-||||+|.||||||.+.+.+++.+... +|.+...-
T Consensus 430 sIye~edvKkglLLqL---fGGt-~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg-------~yTSGkGsS 498 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQL---FGGT-RKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRG-------VYTSGKGSS 498 (804)
T ss_pred hhhcccchhhhHHHHH---hcCC-cccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcc-------eeecCCccc
Confidence 4566777776654332 2111 11122222 2333579999999999999999999986522 11221110
Q ss_pred -cccchhhHH-HHHHHHHHHH---hhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHH----hcccccc
Q 001162 633 -SLEKGPIIR-QALSNFISEA---LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE----YGEKRKS 703 (1134)
Q Consensus 633 -~~~~~~~~~-~~l~~~f~~a---~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~----~~~~~~~ 703 (1134)
.|.....++ ..-+++.-+. .....+|..|||+|++- + .....|.+.|+. +....--
T Consensus 499 avGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~----d-----------StrSvLhEvMEQQTvSIAKAGII 563 (804)
T KOG0478|consen 499 AVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMS----D-----------STRSVLHEVMEQQTLSIAKAGII 563 (804)
T ss_pred hhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhh----H-----------HHHHHHHHHHHHhhhhHhhccee
Confidence 000000000 0001111111 11235689999999983 1 112233333332 1111100
Q ss_pred ccCCCcEEEEEecCCCC-------------CCChhhccCCCccccc-cCCCCCHHHHHHHHHHH
Q 001162 704 SCGIGPIAFVASAQSLE-------------KIPQSLTSSGRFDFHV-QLPAPAASERKAILEHE 753 (1134)
Q Consensus 704 ~~~~~~V~vIattn~~~-------------~Ld~aL~~~gRF~~~i-~l~~P~~eeR~~IL~~~ 753 (1134)
..-.....|+|++|+.+ .|+|.|++ ||+.++ -+..||+..=..|..+.
T Consensus 564 ~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~Hi 625 (804)
T KOG0478|consen 564 ASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHI 625 (804)
T ss_pred eeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHH
Confidence 11112467999999643 36899999 999665 56777776444444443
No 493
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.55 E-value=0.00018 Score=77.47 Aligned_cols=116 Identities=18% Similarity=0.228 Sum_probs=67.0
Q ss_pred CCCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchh--------c----c-----------cccHHHH
Q 001162 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK--------Y----I-----------GASEQAV 926 (1134)
Q Consensus 873 ~~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~--------~----~-----------G~se~~v 926 (1134)
-|+....-++++||||||||+++..++... +.+.+.++..++... + . .+....+
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 356666779999999999999998887543 567788877652100 0 0 0001124
Q ss_pred HHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecC
Q 001162 927 RDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATS 988 (1134)
Q Consensus 927 ~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn 988 (1134)
..+.+.+....|++|+||-+..++.....+......+.+..++..|..+....++.++.|..
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 44444455557899999999998642111111111223333444444444555677776644
No 494
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=2.5e-05 Score=90.77 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=36.9
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHh
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSL 614 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l 614 (1134)
.+.|.++.|.+.++..+.-.. . ...|+||+||||||||++|+.+...|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA--A---------------GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA--A---------------GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH--h---------------cCCcEEEecCCCCchHHhhhhhcccC
Confidence 567899999988776553311 1 13679999999999999999888765
No 495
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.55 E-value=0.0006 Score=79.29 Aligned_cols=236 Identities=14% Similarity=0.166 Sum_probs=0.0
Q ss_pred cccchhhhHhhhhccccceeccccccccCCCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCC
Q 001162 809 PTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPG 888 (1134)
Q Consensus 809 ~~lt~eDf~~Al~~~~P~~lr~v~~~~~~~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppG 888 (1134)
..+..+.|.++-..|+-....++-..+....+..+++ ......|...+.+. ....++++.||+|
T Consensus 156 ~~~Dl~~~~~~R~~FT~dEWid~LlrSiG~~P~~~~~----r~k~~~L~rl~~fv------------e~~~Nli~lGp~G 219 (449)
T TIGR02688 156 SEVDLDYYKEGRKEFTLEEWIDVLIRSIGYEPEGFEA----RQKLLLLARLLPLV------------EPNYNLIELGPKG 219 (449)
T ss_pred CcCCHHHHHHHHhhcCHHHHHHHHHHhcCCCcccCCh----HHHHHHHHhhHHHH------------hcCCcEEEECCCC
Q ss_pred CchhHHHHHHHHH----cCCcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhH
Q 001162 889 CGKTHIVGAAAAA----CSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRV 964 (1134)
Q Consensus 889 tGKT~lA~alA~~----~~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv 964 (1134)
||||++|.+++.. .| -.++.++|+..........+ ..+.+|+|||+..+ .....+.+
T Consensus 220 TGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~~~~lg~v---------~~~DlLI~DEvgyl-------p~~~~~~~ 280 (449)
T TIGR02688 220 TGKSYIYNNLSPYVILISG---GTITVAKLFYNISTRQIGLV---------GRWDVVAFDEVATL-------KFAKPKEL 280 (449)
T ss_pred CCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHHHHHHhhh---------ccCCEEEEEcCCCC-------cCCchHHH
Q ss_pred HHhHhhhccc---------ccccccEEEEEecC---------------CCCcc-chhhcCcCccccee---ecCCCCHHH
Q 001162 965 VNQFLTELDG---------VEVLTGVFVFAATS---------------RPDLL-DAALLRPGRLDRLL---FCDFPSPRE 1016 (1134)
Q Consensus 965 ~~~lL~~ld~---------~~~~~~v~vIatTn---------------~p~~l-d~allrpgRfd~~i---~~~~p~~~e 1016 (1134)
+..|-..|.. ......++++|-++ -|+.+ |.|++. ||.-.| .+|...++-
T Consensus 281 v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~~v~~~~~~~~Lf~~lP~~~~DsAflD--RiH~yiPGWeipk~~~e~ 358 (449)
T TIGR02688 281 IGILKNYMESGSFTRGDETKSSDASFVFLGNVPLTSEHMVKNSDLFSPLPEFMRDSAFLD--RIHGYLPGWEIPKIRKEM 358 (449)
T ss_pred HHHHHHHHHhCceeccceeeeeeeEEEEEcccCCcchhhcCcccccccCChhhhhhHHHH--hhhccCCCCcCccCCHHH
Q ss_pred -------HHHHHHHHHccCCCCCccc-HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHH
Q 001162 1017 -------RLDILKVISRKLPLADDVD-LEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKS 1088 (1134)
Q Consensus 1017 -------r~~Il~~~~~~~~~~~~vd-~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~ 1088 (1134)
..+.|-.+++.+--..-.+ .+...+...+.+++|..+ ++.-....+.-+.-..+ +|.+++++
T Consensus 359 ~t~~yGl~~DylsE~l~~lR~~~~~~~~~~~~~l~~~~~~RD~~a-V~kt~SgllKLL~P~~~---------~~~ee~~~ 428 (449)
T TIGR02688 359 FSNGYGFVVDYFAEALRELREREYADIVDRHFSLSPNLNTRDVIA-VKKTFSGLMKILFPHGT---------ITKEEFTE 428 (449)
T ss_pred cccCCcchHHHHHHHHHHHHhhHHHHhhhhheecCCCcchhhHHH-HHHHHHHHHHHhCCCCC---------CCHHHHHH
Q ss_pred HHh
Q 001162 1089 IAS 1091 (1134)
Q Consensus 1089 al~ 1091 (1134)
.++
T Consensus 429 ~l~ 431 (449)
T TIGR02688 429 CLE 431 (449)
T ss_pred HHH
No 496
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.52 E-value=0.00071 Score=91.00 Aligned_cols=177 Identities=16% Similarity=0.195 Sum_probs=94.2
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc--
Q 001162 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS-- 630 (1134)
Q Consensus 553 ~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s-- 630 (1134)
+.+++|++..++++...+. . .....+-+-|+|++|+||||||++++..+...... .++++..
T Consensus 183 ~~~~vG~~~~l~~l~~lL~----l---------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g---~vfv~~~~v 246 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLH----L---------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQS---SVFIDRAFI 246 (1153)
T ss_pred cccccchHHHHHHHHHHHc----c---------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCe---EEEeecccc
Confidence 4567888888877765431 1 12234568999999999999999999887543221 1122210
Q ss_pred -----cccc----cc---hhhHHHHHHH-------------HHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHH
Q 001162 631 -----RLSL----EK---GPIIRQALSN-------------FISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIA 685 (1134)
Q Consensus 631 -----~l~~----~~---~~~~~~~l~~-------------~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~ 685 (1134)
.... .. .....+.+.. .+......++.+|+|||++.. .
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-----------------~ 309 (1153)
T PLN03210 247 SKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-----------------D 309 (1153)
T ss_pred ccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-----------------H
Confidence 0000 00 0000111111 112222345678999998643 2
Q ss_pred HHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCH--
Q 001162 686 LTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSD-- 763 (1134)
Q Consensus 686 l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~-- 763 (1134)
..+.+....+.+ +. +-.||.||...+.+ .....+..++++.|+.++-.+++..++-+.... .+
T Consensus 310 ~l~~L~~~~~~~--------~~-GsrIIiTTrd~~vl-----~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~ 374 (1153)
T PLN03210 310 VLDALAGQTQWF--------GS-GSRIIVITKDKHFL-----RAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGF 374 (1153)
T ss_pred HHHHHHhhCccC--------CC-CcEEEEEeCcHHHH-----HhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHH
Confidence 223333222211 11 23556666643322 212355678899999999999998765432211 22
Q ss_pred -HHHHHHhhhcCCCC
Q 001162 764 -EILLDVASKCDGYD 777 (1134)
Q Consensus 764 -~~l~~la~~teG~s 777 (1134)
+....++..+.|..
T Consensus 375 ~~l~~~iv~~c~GLP 389 (1153)
T PLN03210 375 MELASEVALRAGNLP 389 (1153)
T ss_pred HHHHHHHHHHhCCCc
Confidence 23456777777753
No 497
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0012 Score=74.15 Aligned_cols=133 Identities=17% Similarity=0.218 Sum_probs=81.3
Q ss_pred CCCceEEEEcCCCccHHHHHHHHHHHhccCCce------------------eeEEEEEecccccccchhhHHHHHHHHHH
Q 001162 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL------------------VAHIVFVCCSRLSLEKGPIIRQALSNFIS 649 (1134)
Q Consensus 588 ~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~------------------~~~~~~v~~s~l~~~~~~~~~~~l~~~f~ 649 (1134)
..+..+||+|| +||+++|+.+|+.+-..... .-.+..+.... ..-..+.++..+..+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~-~~I~idqIR~l~~~~~~ 98 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQG-QVIKTDTIRELVKNFSQ 98 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCC-CcCCHHHHHHHHHHHhh
Confidence 33466999996 68999999999987532210 01122222211 01122334433333222
Q ss_pred HHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccC
Q 001162 650 EALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSS 729 (1134)
Q Consensus 650 ~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~ 729 (1134)
........|++||++|.+.. .-.+.|+..+++-.. ++++|.+|++++.+.|.++|
T Consensus 99 ~p~~~~~kV~II~~ad~m~~---------------~AaNaLLKtLEEPp~---------~t~~iL~t~~~~~lLpTI~S- 153 (290)
T PRK07276 99 SGYEGKQQVFIIKDADKMHV---------------NAANSLLKVIEEPQS---------EIYIFLLTNDENKVLPTIKS- 153 (290)
T ss_pred CcccCCcEEEEeehhhhcCH---------------HHHHHHHHHhcCCCC---------CeEEEEEECChhhCchHHHH-
Confidence 22223346999999999852 345566666666432 47888888889999999999
Q ss_pred CCccccccCCCCCHHHHHHHHH
Q 001162 730 GRFDFHVQLPAPAASERKAILE 751 (1134)
Q Consensus 730 gRF~~~i~l~~P~~eeR~~IL~ 751 (1134)
|.. .++|++ +.++..+++.
T Consensus 154 -Rcq-~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 154 -RTQ-IFHFPK-NEAYLIQLLE 172 (290)
T ss_pred -cce-eeeCCC-cHHHHHHHHH
Confidence 765 788866 5666555554
No 498
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.49 E-value=0.00077 Score=74.01 Aligned_cols=125 Identities=10% Similarity=0.076 Sum_probs=77.6
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhccCCce----------------eeEEEEEecccccccchhhHHHHHHHHHHHHh
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEAL 652 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~~~~~~----------------~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~ 652 (1134)
+|..+||+||+|+||..+|.++|+.+-..... .-.+.++.... ..-..+.++...+.+...+.
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~-~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK-NPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc-ccCCHHHHHHHHHHHccCch
Confidence 45669999999999999999999987532110 01122221111 11223333433332222221
Q ss_pred h-cCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCC
Q 001162 653 D-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGR 731 (1134)
Q Consensus 653 ~-~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gR 731 (1134)
. ....|++||++|.+.. ...+.|+..+++-.. ++++|..|+.++.+.+.++| |
T Consensus 85 e~~~~KV~II~~ae~m~~---------------~AaNaLLK~LEEPp~---------~t~fiLit~~~~~lLpTI~S--R 138 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK---------------QSANSLLKLIEEPPK---------NTYGIFTTRNENNILNTILS--R 138 (261)
T ss_pred hcCCCEEEEeccHhhhCH---------------HHHHHHHHhhcCCCC---------CeEEEEEECChHhCchHhhh--h
Confidence 1 2346999999999851 445666676766432 47888899999999999999 7
Q ss_pred ccccccCCCC
Q 001162 732 FDFHVQLPAP 741 (1134)
Q Consensus 732 F~~~i~l~~P 741 (1134)
.. .+.++.+
T Consensus 139 Cq-~~~~~~~ 147 (261)
T PRK05818 139 CV-QYVVLSK 147 (261)
T ss_pred ee-eeecCCh
Confidence 54 5667666
No 499
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.49 E-value=0.00015 Score=86.99 Aligned_cols=165 Identities=24% Similarity=0.352 Sum_probs=99.5
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc--CCcEEEEeCcccch-------------hcccccHHHHHHHHHHhhhcCCeEEE
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC--SLRFISVKGPELLN-------------KYIGASEQAVRDIFSKATAAAPCLLF 942 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~--~~~~i~i~~~el~~-------------~~~G~se~~v~~lf~~A~~~~P~VLf 942 (1134)
...+++.|.|||||-.+|+++-+.. ..+|+.+||..+-. .+.|...+..+..++.|.++ .||
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gG---tlF 412 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGG---TLF 412 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCC---ccH
Confidence 3469999999999999999998766 47899999975532 12333445556667777666 999
Q ss_pred EcCcccccCCCCCCCCcchhhHHHhHhhhccc--------ccccccEEEEEecCCCCccchhhcCcCcccceee------
Q 001162 943 FDEFDSIAPKRGHDNTGVTDRVVNQFLTELDG--------VEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLF------ 1008 (1134)
Q Consensus 943 iDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~--------~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~------ 1008 (1134)
+|||..| .-.+...||..|.. -...=.|-||+||+++= ..|.+-|||..-+|
T Consensus 413 ldeIgd~-----------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~ 478 (606)
T COG3284 413 LDEIGDM-----------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAF 478 (606)
T ss_pred HHHhhhc-----------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcCe
Confidence 9999887 33455666665532 12111377899998743 35566677765444
Q ss_pred -cCCCCHHHHH---HHHHHHHccC-CCCCcccHHHHHHhc-cCCc--HHHHHHHHHHHH
Q 001162 1009 -CDFPSPRERL---DILKVISRKL-PLADDVDLEAIAHMT-EGFS--GADLQALLSDAQ 1059 (1134)
Q Consensus 1009 -~~~p~~~er~---~Il~~~~~~~-~~~~~vd~~~La~~t-~g~s--g~dl~~l~~~A~ 1059 (1134)
+..|...+|. ..+..++++. ...-..+-+.++... ..+. -+++.+++..++
T Consensus 479 ~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~ 537 (606)
T COG3284 479 VITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLA 537 (606)
T ss_pred eeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 3455554443 3444443322 222233444444322 1233 366666655444
No 500
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.47 E-value=0.0019 Score=71.01 Aligned_cols=97 Identities=15% Similarity=0.169 Sum_probs=55.3
Q ss_pred CCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcccc----
Q 001162 846 VGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGA---- 921 (1134)
Q Consensus 846 i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~G~---- 921 (1134)
+-|+.-+++.+-..+...... ..-+.|.-+=|+|++||||..+++.||+.+-..- -.+.++..|++.
T Consensus 84 lfGQHla~~~Vv~alk~~~~n------~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~G---l~S~~V~~fvat~hFP 154 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWAN------PNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGG---LRSPFVHHFVATLHFP 154 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcC------CCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcc---ccchhHHHhhhhccCC
Confidence 456666666666555532221 1122334466889999999999999998662100 012222222211
Q ss_pred --------cHHHHHHHHHHhhhcCCeEEEEcCcccccC
Q 001162 922 --------SEQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1134)
Q Consensus 922 --------se~~v~~lf~~A~~~~P~VLfiDEid~l~~ 951 (1134)
.++.-+.+-..++.-+.++++|||+|.|-+
T Consensus 155 ~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~ 192 (344)
T KOG2170|consen 155 HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPP 192 (344)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCH
Confidence 122233444445556667999999999943
Done!