Query 001162
Match_columns 1134
No_of_seqs 614 out of 4237
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 14:13:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001162.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001162hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 3.2E-86 1.1E-90 823.2 39.2 546 550-1118 200-768 (806)
2 1ypw_A Transitional endoplasmi 100.0 5.8E-61 2E-65 608.3 21.3 544 551-1117 201-767 (806)
3 4b4t_J 26S protease regulatory 100.0 1.4E-48 4.8E-53 449.1 21.9 247 838-1095 142-391 (405)
4 4b4t_I 26S protease regulatory 100.0 4.7E-48 1.6E-52 445.1 17.3 251 838-1099 176-429 (437)
5 4b4t_L 26S protease subunit RP 100.0 1.1E-46 3.8E-51 440.5 22.9 256 839-1105 176-434 (437)
6 4b4t_M 26S protease regulatory 100.0 1.8E-46 6.2E-51 438.4 23.2 250 838-1098 175-427 (434)
7 4b4t_H 26S protease regulatory 100.0 2.6E-46 9E-51 434.6 23.0 246 838-1094 203-451 (467)
8 4b4t_K 26S protease regulatory 100.0 3E-45 1E-49 427.9 24.3 251 838-1099 166-421 (428)
9 3cf2_A TER ATPase, transitiona 100.0 1.3E-40 4.5E-45 414.2 19.5 258 840-1097 200-463 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 100.0 5.8E-39 2E-43 366.5 26.8 273 839-1114 7-320 (322)
11 3cf0_A Transitional endoplasmi 100.0 9.8E-39 3.3E-43 361.5 24.3 274 839-1112 10-300 (301)
12 2x8a_A Nuclear valosin-contain 100.0 1.7E-38 5.8E-43 354.2 22.5 264 839-1102 5-273 (274)
13 3eie_A Vacuolar protein sortin 100.0 1.3E-37 4.4E-42 355.7 24.0 275 838-1115 12-320 (322)
14 2qp9_X Vacuolar protein sortin 100.0 3.7E-37 1.3E-41 356.4 24.1 273 839-1114 46-352 (355)
15 2zan_A Vacuolar protein sortin 100.0 2.2E-36 7.5E-41 359.9 23.2 273 839-1114 129-442 (444)
16 4b4t_J 26S protease regulatory 100.0 1.8E-35 6E-40 340.4 24.2 249 550-826 144-392 (405)
17 4b4t_I 26S protease regulatory 100.0 7.3E-35 2.5E-39 335.6 24.4 250 550-827 178-427 (437)
18 1wlf_A PEX1, peroxisome biogen 100.0 1.5E-35 5.1E-40 305.9 14.7 163 1-172 13-179 (179)
19 4b4t_M 26S protease regulatory 100.0 1.4E-34 4.7E-39 338.1 23.3 253 550-830 177-429 (434)
20 4b4t_L 26S protease subunit RP 100.0 4.6E-34 1.6E-38 334.0 24.5 249 550-826 177-425 (437)
21 4b4t_H 26S protease regulatory 100.0 5.3E-34 1.8E-38 331.6 23.4 248 550-825 205-452 (467)
22 4b4t_K 26S protease regulatory 100.0 2.1E-33 7.1E-38 328.1 25.6 247 550-824 168-415 (428)
23 1r6b_X CLPA protein; AAA+, N-t 100.0 1.3E-32 4.5E-37 349.6 30.5 455 552-1067 184-720 (758)
24 3b9p_A CG5977-PA, isoform A; A 100.0 3.8E-33 1.3E-37 314.8 21.3 275 839-1116 16-295 (297)
25 2ce7_A Cell division protein F 100.0 1.3E-32 4.5E-37 326.6 26.5 245 839-1095 11-258 (476)
26 3h4m_A Proteasome-activating n 100.0 1.2E-32 4.3E-37 308.5 22.8 265 839-1114 12-281 (285)
27 3hu3_A Transitional endoplasmi 100.0 3.5E-33 1.2E-37 334.3 19.3 257 841-1097 201-463 (489)
28 3d8b_A Fidgetin-like protein 1 100.0 5.2E-33 1.8E-37 322.1 19.5 273 839-1114 79-355 (357)
29 3pxi_A Negative regulator of g 100.0 1E-31 3.4E-36 341.0 28.3 444 552-1067 178-729 (758)
30 1lv7_A FTSH; alpha/beta domain 100.0 1.4E-31 4.7E-36 295.7 25.1 245 839-1095 7-254 (257)
31 3vfd_A Spastin; ATPase, microt 100.0 8.8E-32 3E-36 315.5 23.1 273 839-1114 110-386 (389)
32 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.9E-31 9.9E-36 293.2 17.1 244 840-1095 2-251 (262)
33 1qvr_A CLPB protein; coiled co 100.0 2.8E-30 9.7E-35 331.2 28.5 463 551-1068 167-825 (854)
34 2dhr_A FTSH; AAA+ protein, hex 100.0 7.8E-31 2.7E-35 313.1 20.6 245 839-1095 26-273 (499)
35 1ixz_A ATP-dependent metallopr 100.0 7E-30 2.4E-34 281.5 21.7 240 839-1090 11-253 (254)
36 3hu3_A Transitional endoplasmi 100.0 1.2E-28 4.1E-33 295.1 31.2 277 552-851 202-484 (489)
37 2r62_A Cell division protease 100.0 3.6E-31 1.2E-35 294.0 6.8 250 839-1100 6-260 (268)
38 1iy2_A ATP-dependent metallopr 100.0 1.9E-28 6.5E-33 273.9 22.3 240 839-1090 35-277 (278)
39 2x8a_A Nuclear valosin-contain 99.9 4.1E-27 1.4E-31 262.3 22.2 260 551-829 7-270 (274)
40 1xwi_A SKD1 protein; VPS4B, AA 99.9 1.5E-26 5.3E-31 263.8 26.3 226 551-796 9-234 (322)
41 3eie_A Vacuolar protein sortin 99.9 1.3E-26 4.3E-31 264.7 23.3 256 551-827 15-302 (322)
42 1ypw_A Transitional endoplasmi 99.9 3.1E-27 1.1E-31 299.6 18.2 257 840-1096 200-462 (806)
43 2qp9_X Vacuolar protein sortin 99.9 3.1E-26 1.1E-30 264.8 24.1 258 550-828 47-336 (355)
44 3cf0_A Transitional endoplasmi 99.9 1.7E-26 5.8E-31 261.1 18.4 259 551-826 12-284 (301)
45 2qz4_A Paraplegin; AAA+, SPG7, 99.9 2.5E-25 8.7E-30 245.5 21.8 250 551-827 3-253 (262)
46 2ce7_A Cell division protein F 99.9 4.5E-25 1.5E-29 262.0 25.4 248 550-826 12-259 (476)
47 3h4m_A Proteasome-activating n 99.9 7.5E-25 2.5E-29 245.2 23.5 248 551-826 14-261 (285)
48 1lv7_A FTSH; alpha/beta domain 99.9 1.9E-24 6.4E-29 238.5 24.3 246 550-824 8-253 (257)
49 2zan_A Vacuolar protein sortin 99.9 6E-25 2E-29 261.4 19.1 226 550-796 130-356 (444)
50 2c9o_A RUVB-like 1; hexameric 99.9 8.6E-26 2.9E-30 269.9 10.8 366 552-1093 35-437 (456)
51 3t15_A Ribulose bisphosphate c 99.9 4.6E-25 1.6E-29 248.3 13.4 175 873-1053 31-222 (293)
52 3b9p_A CG5977-PA, isoform A; A 99.9 1.7E-23 5.9E-28 235.7 24.0 259 550-827 17-276 (297)
53 3d8b_A Fidgetin-like protein 1 99.9 1.3E-23 4.3E-28 243.3 22.0 257 551-827 81-338 (357)
54 3vfd_A Spastin; ATPase, microt 99.9 3.1E-23 1.1E-27 242.9 23.2 257 550-826 111-368 (389)
55 2dhr_A FTSH; AAA+ protein, hex 99.9 2.3E-23 8E-28 248.7 21.7 247 550-826 27-274 (499)
56 1ixz_A ATP-dependent metallopr 99.9 1.1E-22 3.7E-27 224.0 22.8 241 550-820 12-253 (254)
57 2r62_A Cell division protease 99.9 6.7E-25 2.3E-29 243.4 3.0 252 551-829 8-259 (268)
58 1iy2_A ATP-dependent metallopr 99.9 9.1E-22 3.1E-26 219.7 22.9 241 550-820 36-277 (278)
59 2c9o_A RUVB-like 1; hexameric 99.9 5E-24 1.7E-28 254.6 -0.0 200 840-1057 33-262 (456)
60 3syl_A Protein CBBX; photosynt 99.8 7.1E-21 2.4E-25 215.3 13.5 214 845-1068 32-268 (309)
61 3cmw_A Protein RECA, recombina 99.8 5.8E-21 2E-25 252.1 11.4 151 839-990 1015-1218(1706)
62 3t15_A Ribulose bisphosphate c 99.8 1.8E-20 6.1E-25 210.9 13.0 184 585-783 31-222 (293)
63 1g41_A Heat shock protein HSLU 99.8 4.1E-19 1.4E-23 207.9 20.2 377 555-1091 16-431 (444)
64 3syl_A Protein CBBX; photosynt 99.8 5.6E-19 1.9E-23 199.7 15.2 220 555-797 32-267 (309)
65 3uk6_A RUVB-like 2; hexameric 99.8 1.7E-18 5.9E-23 200.7 18.8 218 841-1093 41-330 (368)
66 3m6a_A ATP-dependent protease 99.8 7.7E-19 2.6E-23 213.7 11.4 231 842-1095 79-343 (543)
67 1g41_A Heat shock protein HSLU 99.8 2E-19 6.7E-24 210.6 6.0 169 844-1021 15-188 (444)
68 1ofh_A ATP-dependent HSL prote 99.8 3.1E-18 1.1E-22 193.2 15.4 242 845-1093 16-299 (310)
69 3pfi_A Holliday junction ATP-d 99.7 6.9E-17 2.3E-21 185.1 22.8 216 839-1095 24-256 (338)
70 3hws_A ATP-dependent CLP prote 99.7 8.9E-18 3E-22 194.7 12.2 239 846-1090 17-346 (363)
71 1hqc_A RUVB; extended AAA-ATPa 99.7 1.5E-16 5E-21 181.0 20.4 235 839-1113 7-261 (324)
72 1d2n_A N-ethylmaleimide-sensit 99.7 1E-16 3.4E-21 178.2 18.5 174 873-1056 59-243 (272)
73 3uk6_A RUVB-like 2; hexameric 99.7 3.2E-16 1.1E-20 181.6 20.6 221 552-824 42-331 (368)
74 4akg_A Glutathione S-transfera 99.7 2.8E-16 9.7E-21 216.3 21.2 337 590-948 1267-1678(2695)
75 3pfi_A Holliday junction ATP-d 99.7 1.1E-15 3.8E-20 175.0 21.8 218 552-822 27-253 (338)
76 3pvs_A Replication-associated 99.7 8.7E-16 3E-20 182.1 19.6 226 840-1114 22-264 (447)
77 1um8_A ATP-dependent CLP prote 99.7 3.1E-16 1.1E-20 182.6 14.6 239 845-1091 22-363 (376)
78 1ofh_A ATP-dependent HSL prote 99.7 7.8E-16 2.7E-20 173.5 17.1 251 555-823 16-299 (310)
79 1d2n_A N-ethylmaleimide-sensit 99.7 9E-16 3.1E-20 170.4 16.1 206 555-789 34-246 (272)
80 2chg_A Replication factor C sm 99.6 7.3E-15 2.5E-19 156.2 20.8 200 840-1091 13-224 (226)
81 3hws_A ATP-dependent CLP prote 99.6 1.6E-15 5.4E-20 175.8 16.6 252 556-820 17-346 (363)
82 2z4s_A Chromosomal replication 99.6 4E-15 1.4E-19 176.5 17.8 193 878-1095 130-334 (440)
83 1hqc_A RUVB; extended AAA-ATPa 99.6 8E-15 2.7E-19 166.6 19.3 219 552-822 10-237 (324)
84 3m6a_A ATP-dependent protease 99.6 2E-15 6.8E-20 183.7 14.2 233 554-822 81-340 (543)
85 3te6_A Regulatory protein SIR3 99.6 3.4E-15 1.2E-19 168.2 14.8 198 877-1091 44-313 (318)
86 1jbk_A CLPB protein; beta barr 99.6 1.3E-15 4.4E-20 158.1 10.6 158 841-1021 19-194 (195)
87 2v1u_A Cell division control p 99.6 2.2E-14 7.7E-19 166.4 22.2 221 843-1093 18-276 (387)
88 2chg_A Replication factor C sm 99.6 2E-14 6.7E-19 152.8 19.9 208 552-821 15-224 (226)
89 1l8q_A Chromosomal replication 99.6 1.2E-14 3.9E-19 165.7 18.7 216 841-1092 8-239 (324)
90 4fcw_A Chaperone protein CLPB; 99.6 3.1E-15 1.1E-19 169.0 13.5 207 844-1069 17-285 (311)
91 1sxj_A Activator 1 95 kDa subu 99.6 2.2E-15 7.6E-20 182.6 12.9 201 838-1057 33-251 (516)
92 1r6b_X CLPA protein; AAA+, N-t 99.6 1.3E-14 4.6E-19 184.1 20.6 224 841-1093 183-433 (758)
93 3pxg_A Negative regulator of g 99.6 5.9E-15 2E-19 176.6 16.2 185 840-1062 176-385 (468)
94 1njg_A DNA polymerase III subu 99.6 2.5E-14 8.5E-19 153.9 19.6 202 840-1091 19-249 (250)
95 3te6_A Regulatory protein SIR3 99.6 7.7E-15 2.6E-19 165.3 15.9 226 556-820 22-312 (318)
96 1g8p_A Magnesium-chelatase 38 99.6 1.9E-14 6.6E-19 165.2 19.2 213 840-1092 20-321 (350)
97 1in4_A RUVB, holliday junction 99.6 1.1E-13 3.7E-18 158.5 24.3 235 840-1115 21-275 (334)
98 4akg_A Glutathione S-transfera 99.6 1.8E-13 6.2E-18 188.8 30.8 139 877-1027 1266-1433(2695)
99 2v1u_A Cell division control p 99.6 2.2E-14 7.4E-19 166.6 18.7 228 554-823 19-276 (387)
100 4fcw_A Chaperone protein CLPB; 99.6 3.3E-14 1.1E-18 160.6 19.3 215 555-797 18-283 (311)
101 3u61_B DNA polymerase accessor 99.6 1.8E-14 6.2E-19 164.0 17.0 174 839-1046 21-208 (324)
102 3bos_A Putative DNA replicatio 99.6 3.3E-14 1.1E-18 153.6 17.5 204 841-1091 25-241 (242)
103 3bos_A Putative DNA replicatio 99.6 5.1E-14 1.8E-18 152.1 18.2 185 589-821 51-241 (242)
104 1njg_A DNA polymerase III subu 99.6 5.1E-14 1.7E-18 151.5 17.5 205 553-820 22-248 (250)
105 3pvs_A Replication-associated 99.6 6E-14 2.1E-18 166.3 19.3 209 552-823 24-244 (447)
106 2r44_A Uncharacterized protein 99.6 6.3E-14 2.1E-18 160.1 18.7 211 842-1093 25-297 (331)
107 2chq_A Replication factor C sm 99.5 3.4E-14 1.1E-18 160.7 16.0 177 838-1045 11-195 (319)
108 2z4s_A Chromosomal replication 99.5 2.9E-14 9.8E-19 169.2 16.0 199 590-824 130-333 (440)
109 1sxj_D Activator 1 41 kDa subu 99.5 1E-13 3.4E-18 159.3 19.9 209 839-1093 32-263 (353)
110 2qby_B CDC6 homolog 3, cell di 99.5 1.1E-13 3.7E-18 161.0 20.0 212 844-1094 20-271 (384)
111 2qby_B CDC6 homolog 3, cell di 99.5 7.9E-14 2.7E-18 162.1 18.7 219 554-823 20-270 (384)
112 1qvr_A CLPB protein; coiled co 99.5 3.2E-14 1.1E-18 182.5 16.5 199 841-1062 167-392 (854)
113 3pxi_A Negative regulator of g 99.5 2.7E-14 9.4E-19 181.1 14.7 185 840-1062 176-385 (758)
114 3u61_B DNA polymerase accessor 99.5 1.5E-13 5E-18 156.5 19.1 188 552-789 24-220 (324)
115 1fnn_A CDC6P, cell division co 99.5 6.1E-13 2.1E-17 154.6 22.7 224 844-1098 17-279 (389)
116 1sxj_B Activator 1 37 kDa subu 99.5 2.6E-13 9E-18 153.6 19.1 174 839-1047 16-202 (323)
117 1l8q_A Chromosomal replication 99.5 1.4E-13 4.9E-18 156.6 16.2 198 590-823 37-240 (324)
118 2p65_A Hypothetical protein PF 99.5 4.2E-14 1.4E-18 146.3 10.5 151 841-1013 19-187 (187)
119 1iqp_A RFCS; clamp loader, ext 99.5 1.9E-13 6.4E-18 155.1 16.7 186 839-1056 20-213 (327)
120 1jr3_A DNA polymerase III subu 99.5 3.4E-13 1.1E-17 156.1 19.0 186 839-1059 11-225 (373)
121 1sxj_D Activator 1 41 kDa subu 99.5 2.8E-13 9.5E-18 155.6 17.3 215 552-821 35-261 (353)
122 1jbk_A CLPB protein; beta barr 99.5 5.2E-14 1.8E-18 145.9 10.0 163 552-750 20-194 (195)
123 2qby_A CDC6 homolog 1, cell di 99.5 2.4E-13 8.1E-18 157.6 16.6 220 843-1093 19-272 (386)
124 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 1.1E-13 3.9E-18 165.3 13.9 202 845-1087 23-280 (500)
125 2qby_A CDC6 homolog 1, cell di 99.5 5E-13 1.7E-17 154.8 19.0 226 554-823 20-272 (386)
126 1fnn_A CDC6P, cell division co 99.5 1.3E-12 4.3E-17 152.0 21.2 224 554-823 17-274 (389)
127 1um8_A ATP-dependent CLP prote 99.5 3.7E-13 1.3E-17 156.5 16.5 220 588-821 70-363 (376)
128 3pxg_A Negative regulator of g 99.5 7.7E-14 2.6E-18 166.9 10.7 191 552-793 178-386 (468)
129 1in4_A RUVB, holliday junction 99.5 2E-12 7E-17 147.9 21.7 217 553-822 24-249 (334)
130 1sxj_A Activator 1 95 kDa subu 99.5 3.7E-13 1.3E-17 163.0 15.6 203 551-788 36-255 (516)
131 1iqp_A RFCS; clamp loader, ext 99.4 1E-12 3.5E-17 149.0 17.7 192 552-789 23-216 (327)
132 1g8p_A Magnesium-chelatase 38 99.4 7.7E-13 2.6E-17 151.8 16.5 144 655-826 144-325 (350)
133 3vkg_A Dynein heavy chain, cyt 99.4 1.2E-12 4E-17 181.3 21.0 336 590-948 1304-1715(3245)
134 1jr3_A DNA polymerase III subu 99.4 2.2E-12 7.6E-17 149.2 19.2 191 552-790 14-226 (373)
135 2r44_A Uncharacterized protein 99.4 2.3E-12 8E-17 147.0 18.9 217 554-826 27-300 (331)
136 1sxj_B Activator 1 37 kDa subu 99.4 3E-12 1E-16 144.9 19.4 192 552-789 19-213 (323)
137 1sxj_E Activator 1 40 kDa subu 99.4 2.1E-12 7.1E-17 148.6 18.3 189 837-1059 7-241 (354)
138 2chq_A Replication factor C sm 99.4 5.9E-13 2E-17 150.4 12.8 192 552-789 15-208 (319)
139 3cmu_A Protein RECA, recombina 99.4 3.2E-12 1.1E-16 170.9 21.6 113 874-986 1423-1560(2050)
140 2bjv_A PSP operon transcriptio 99.4 1.3E-12 4.6E-17 144.2 14.6 205 552-792 4-240 (265)
141 1sxj_C Activator 1 40 kDa subu 99.4 3.7E-12 1.3E-16 146.0 17.6 207 839-1092 20-238 (340)
142 2p65_A Hypothetical protein PF 99.4 8E-13 2.7E-17 136.6 10.5 156 552-742 20-187 (187)
143 3cmw_A Protein RECA, recombina 99.4 1.3E-11 4.3E-16 163.9 23.4 113 876-988 1429-1566(1706)
144 1ojl_A Transcriptional regulat 99.4 9E-13 3.1E-17 148.7 10.3 188 845-1060 3-233 (304)
145 3f9v_A Minichromosome maintena 99.4 3.9E-13 1.3E-17 164.9 7.8 164 844-1027 295-492 (595)
146 1sxj_E Activator 1 40 kDa subu 99.4 5.7E-12 2E-16 144.9 16.1 192 552-790 12-242 (354)
147 2bjv_A PSP operon transcriptio 99.3 3.7E-12 1.3E-16 140.6 12.8 194 841-1061 3-239 (265)
148 1sxj_C Activator 1 40 kDa subu 99.3 1.1E-11 3.8E-16 142.0 16.3 187 553-785 24-212 (340)
149 1ojl_A Transcriptional regulat 99.3 4.2E-12 1.5E-16 143.2 12.5 202 555-792 3-235 (304)
150 1a5t_A Delta prime, HOLB; zinc 99.3 3.6E-11 1.2E-15 137.5 18.8 165 849-1048 7-199 (334)
151 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 9E-12 3.1E-16 149.0 13.0 194 591-817 42-280 (500)
152 2gno_A DNA polymerase III, gam 99.3 2.2E-11 7.6E-16 137.1 15.1 142 848-1025 1-152 (305)
153 1a5t_A Delta prime, HOLB; zinc 99.2 6.6E-11 2.3E-15 135.3 16.1 180 557-787 5-207 (334)
154 3cmu_A Protein RECA, recombina 99.2 1E-11 3.5E-16 166.1 9.0 115 874-988 728-867 (2050)
155 1w5s_A Origin recognition comp 99.2 2.7E-10 9.4E-15 133.4 19.9 231 554-822 22-292 (412)
156 3n70_A Transport activator; si 99.2 1.2E-11 4E-16 123.9 6.7 112 845-990 2-116 (145)
157 3co5_A Putative two-component 99.2 9.2E-12 3.1E-16 124.4 5.3 112 845-990 5-116 (143)
158 3k1j_A LON protease, ATP-depen 99.2 5.8E-11 2E-15 146.5 11.3 215 839-1092 36-374 (604)
159 3f9v_A Minichromosome maintena 99.1 3.4E-11 1.1E-15 147.8 6.4 140 590-756 327-492 (595)
160 3n70_A Transport activator; si 99.1 1.1E-10 3.8E-15 116.7 8.1 88 555-668 2-89 (145)
161 1w5s_A Origin recognition comp 99.1 2.3E-09 8E-14 125.4 20.2 224 844-1093 22-293 (412)
162 2krk_A 26S protease regulatory 99.1 1.3E-10 4.5E-15 105.2 7.0 78 1008-1096 7-84 (86)
163 3aji_B S6C, proteasome (prosom 99.1 1.2E-10 4.3E-15 104.8 6.5 81 1013-1105 2-82 (83)
164 2yuj_A Ubiquitin fusion degrad 99.1 2.3E-09 7.8E-14 109.4 15.6 151 12-170 39-190 (190)
165 3vlf_B 26S protease regulatory 99.0 3.5E-10 1.2E-14 103.0 8.3 77 1013-1100 2-78 (88)
166 3kw6_A 26S protease regulatory 99.0 4E-10 1.4E-14 100.3 8.2 75 1010-1095 1-75 (78)
167 3co5_A Putative two-component 99.0 1.1E-10 3.7E-15 116.6 4.9 84 555-668 5-88 (143)
168 3vkg_A Dynein heavy chain, cyt 98.9 2.7E-08 9.3E-13 138.5 24.6 134 591-751 605-750 (3245)
169 2gno_A DNA polymerase III, gam 98.9 3.6E-09 1.2E-13 119.0 12.4 130 591-754 19-152 (305)
170 3k1j_A LON protease, ATP-depen 98.9 2.2E-08 7.5E-13 123.5 18.2 139 655-821 201-373 (604)
171 2dzn_B 26S protease regulatory 98.8 1.1E-09 3.9E-14 98.3 2.9 79 1015-1104 1-80 (82)
172 3ec2_A DNA replication protein 98.7 8.3E-09 2.8E-13 106.7 6.7 98 840-949 6-112 (180)
173 2qen_A Walker-type ATPase; unk 98.7 4.6E-07 1.6E-11 103.0 21.7 188 554-787 12-248 (350)
174 2vhj_A Ntpase P4, P4; non- hyd 98.7 7.5E-09 2.6E-13 115.5 5.7 121 874-997 119-242 (331)
175 2kjq_A DNAA-related protein; s 98.7 3E-08 1E-12 99.6 8.4 104 878-1009 36-145 (149)
176 1ny5_A Transcriptional regulat 98.7 5.2E-08 1.8E-12 113.5 10.9 181 879-1090 161-384 (387)
177 1ny5_A Transcriptional regulat 98.6 6.2E-08 2.1E-12 112.9 11.1 202 555-792 138-370 (387)
178 3dzd_A Transcriptional regulat 98.6 7.2E-07 2.5E-11 103.0 18.5 201 555-792 130-361 (368)
179 2fna_A Conserved hypothetical 98.6 1.5E-06 5.2E-11 98.9 20.5 183 554-787 13-252 (357)
180 3tiw_A Transitional endoplasmi 98.5 2.7E-06 9.2E-11 87.8 17.8 158 2-169 25-185 (187)
181 3f8t_A Predicted ATPase involv 98.5 4E-07 1.4E-11 106.0 12.4 209 846-1093 215-483 (506)
182 2w58_A DNAI, primosome compone 98.5 1.3E-07 4.5E-12 99.4 7.4 70 879-950 55-128 (202)
183 3ec2_A DNA replication protein 98.5 1.4E-07 4.7E-12 97.4 7.3 77 587-667 35-112 (180)
184 2r2a_A Uncharacterized protein 98.5 2.2E-07 7.4E-12 97.8 8.4 128 879-1015 6-156 (199)
185 2fna_A Conserved hypothetical 98.5 1.3E-06 4.6E-11 99.4 15.6 185 843-1056 12-251 (357)
186 1svm_A Large T antigen; AAA+ f 98.5 1.4E-07 4.8E-12 108.8 6.9 119 874-1011 165-284 (377)
187 2kjq_A DNAA-related protein; s 98.4 7.6E-07 2.6E-11 89.3 11.1 61 589-667 35-95 (149)
188 1cz4_A VCP-like ATPase; double 98.4 1.2E-06 4.1E-11 90.6 11.7 150 13-173 21-177 (185)
189 2krk_A 26S protease regulatory 98.4 2.5E-07 8.6E-12 83.5 5.2 80 735-826 5-84 (86)
190 3dzd_A Transcriptional regulat 98.4 8.6E-07 3E-11 102.4 10.5 164 879-1059 153-358 (368)
191 2qen_A Walker-type ATPase; unk 98.4 5.9E-06 2E-10 93.8 17.4 188 842-1056 10-247 (350)
192 3kw6_A 26S protease regulatory 98.3 4.3E-07 1.5E-11 80.5 5.8 74 739-824 1-74 (78)
193 2qgz_A Helicase loader, putati 98.3 3.1E-07 1.1E-11 103.5 5.2 70 878-949 152-226 (308)
194 3qwz_A Transitional endoplasmi 98.3 4.6E-06 1.6E-10 87.7 13.6 161 3-173 29-192 (211)
195 2vhj_A Ntpase P4, P4; non- hyd 98.3 1.4E-06 4.7E-11 97.4 9.3 76 586-669 119-196 (331)
196 1jr3_D DNA polymerase III, del 98.3 7.8E-06 2.7E-10 93.3 15.1 165 591-790 19-190 (343)
197 2w58_A DNAI, primosome compone 98.2 2.5E-06 8.6E-11 89.5 9.8 73 590-667 54-127 (202)
198 2r2a_A Uncharacterized protein 98.2 1.4E-06 4.7E-11 91.7 6.7 131 591-743 6-155 (199)
199 1tue_A Replication protein E1; 98.2 2.4E-06 8.3E-11 89.1 7.3 29 587-615 55-83 (212)
200 3f8t_A Predicted ATPase involv 98.1 5.7E-06 2E-10 96.4 9.3 192 592-823 241-483 (506)
201 3aji_B S6C, proteasome (prosom 98.1 3.3E-06 1.1E-10 75.7 5.4 75 742-828 2-76 (83)
202 3vlf_B 26S protease regulatory 98.1 2.8E-06 9.5E-11 77.1 4.8 76 742-829 2-77 (88)
203 1jr3_D DNA polymerase III, del 98.0 4.6E-05 1.6E-09 86.9 15.9 143 878-1044 18-175 (343)
204 2qgz_A Helicase loader, putati 98.0 8.2E-06 2.8E-10 91.8 7.3 73 590-667 152-226 (308)
205 1ye8_A Protein THEP1, hypothet 97.9 4E-05 1.4E-09 79.1 11.5 27 880-906 2-28 (178)
206 1tf7_A KAIC; homohexamer, hexa 97.9 0.00039 1.3E-08 84.0 22.0 78 874-951 277-385 (525)
207 1tue_A Replication protein E1; 97.9 9.1E-06 3.1E-10 84.9 5.4 30 878-907 58-87 (212)
208 1zc1_A Ubiquitin fusion degrad 97.9 0.00012 4E-09 75.8 13.4 154 14-175 46-203 (208)
209 1u0j_A DNA replication protein 97.7 2.6E-05 8.7E-10 85.1 6.4 28 588-615 102-129 (267)
210 1svm_A Large T antigen; AAA+ f 97.7 3.9E-05 1.3E-09 88.4 6.8 119 586-740 165-284 (377)
211 1u0j_A DNA replication protein 97.6 8.3E-05 2.9E-09 81.1 8.5 27 878-904 104-130 (267)
212 1ye8_A Protein THEP1, hypothet 97.5 0.00027 9.4E-09 72.7 10.2 24 592-615 2-25 (178)
213 2w0m_A SSO2452; RECA, SSPF, un 97.5 0.00025 8.6E-09 75.3 9.7 38 874-911 19-59 (235)
214 2dzn_B 26S protease regulatory 97.5 3.1E-05 1E-09 69.2 2.0 69 744-824 1-69 (82)
215 3hr8_A Protein RECA; alpha and 97.5 0.00032 1.1E-08 80.1 10.3 113 874-986 57-194 (356)
216 2w0m_A SSO2452; RECA, SSPF, un 97.4 0.00052 1.8E-08 72.8 11.3 29 587-615 20-48 (235)
217 1n0w_A DNA repair protein RAD5 97.4 0.00022 7.7E-09 76.4 8.3 118 874-991 20-175 (243)
218 2cvh_A DNA repair and recombin 97.4 0.00087 3E-08 70.6 12.0 40 586-631 16-55 (220)
219 1xp8_A RECA protein, recombina 97.4 0.00041 1.4E-08 79.7 9.9 114 874-987 70-208 (366)
220 1n0w_A DNA repair protein RAD5 97.4 0.00088 3E-08 71.7 11.9 83 586-668 20-132 (243)
221 2zr9_A Protein RECA, recombina 97.3 0.00024 8.2E-09 81.2 7.6 78 874-951 57-153 (349)
222 2cvh_A DNA repair and recombin 97.3 0.00043 1.5E-08 73.0 8.6 40 874-913 16-55 (220)
223 3hr8_A Protein RECA; alpha and 97.2 0.002 6.9E-08 73.5 12.9 81 586-669 57-153 (356)
224 2zr9_A Protein RECA, recombina 97.2 0.00073 2.5E-08 77.2 8.9 80 586-668 57-152 (349)
225 1u94_A RECA protein, recombina 97.1 0.00087 3E-08 76.7 9.3 114 874-987 59-197 (356)
226 1xp8_A RECA protein, recombina 97.1 0.0019 6.6E-08 74.1 11.8 81 586-669 70-166 (366)
227 2z43_A DNA repair and recombin 97.1 0.00048 1.7E-08 77.9 6.6 114 874-987 103-255 (324)
228 1z6t_A APAF-1, apoptotic prote 97.1 0.0051 1.7E-07 75.2 16.0 178 553-784 123-327 (591)
229 2z43_A DNA repair and recombin 97.1 0.0014 4.9E-08 74.0 10.0 84 586-669 103-217 (324)
230 2orw_A Thymidine kinase; TMTK, 97.0 0.00033 1.1E-08 72.6 4.0 68 880-949 5-88 (184)
231 1z6t_A APAF-1, apoptotic prote 97.0 0.0081 2.8E-07 73.4 17.0 167 842-1047 122-321 (591)
232 1v5w_A DMC1, meiotic recombina 97.0 0.00085 2.9E-08 76.5 7.3 115 874-988 118-272 (343)
233 1u94_A RECA protein, recombina 97.0 0.0016 5.6E-08 74.4 9.5 80 586-669 59-155 (356)
234 2r8r_A Sensor protein; KDPD, P 97.0 0.0091 3.1E-07 63.3 14.3 67 879-949 7-96 (228)
235 1v5w_A DMC1, meiotic recombina 96.9 0.0025 8.7E-08 72.5 10.9 84 586-669 118-233 (343)
236 1qhx_A CPT, protein (chloramph 96.9 0.0012 4E-08 67.2 7.1 36 879-914 4-39 (178)
237 3upu_A ATP-dependent DNA helic 96.9 0.0015 5.2E-08 77.4 9.0 96 880-989 47-166 (459)
238 4a74_A DNA repair and recombin 96.9 0.00082 2.8E-08 71.3 5.9 40 874-913 21-69 (231)
239 2a5y_B CED-4; apoptosis; HET: 96.9 0.0075 2.6E-07 73.2 15.1 169 557-776 131-329 (549)
240 3io5_A Recombination and repai 96.9 0.0027 9.1E-08 70.7 9.9 111 874-985 25-167 (333)
241 2ehv_A Hypothetical protein PH 96.9 0.0021 7.2E-08 69.0 9.0 114 874-993 26-185 (251)
242 4a74_A DNA repair and recombin 96.8 0.0033 1.1E-07 66.5 10.1 30 586-615 21-50 (231)
243 2iut_A DNA translocase FTSK; n 96.8 0.0075 2.6E-07 72.4 14.1 140 591-751 215-420 (574)
244 2ehv_A Hypothetical protein PH 96.8 0.0041 1.4E-07 66.7 10.6 27 586-612 26-52 (251)
245 3lda_A DNA repair protein RAD5 96.8 0.0041 1.4E-07 72.1 11.1 84 586-669 174-287 (400)
246 3lda_A DNA repair protein RAD5 96.8 0.0022 7.4E-08 74.5 8.5 116 874-989 174-327 (400)
247 2dr3_A UPF0273 protein PH0284; 96.8 0.0059 2E-07 65.3 11.3 29 586-614 19-47 (247)
248 1pzn_A RAD51, DNA repair and r 96.7 0.0017 5.8E-08 74.2 6.9 40 874-913 127-175 (349)
249 3sfz_A APAF-1, apoptotic pepti 96.7 0.016 5.5E-07 76.9 16.9 178 553-782 123-325 (1249)
250 3io5_A Recombination and repai 96.7 0.0056 1.9E-07 68.1 10.3 81 587-669 26-125 (333)
251 3dm5_A SRP54, signal recogniti 96.7 0.0065 2.2E-07 71.1 11.4 72 878-949 100-194 (443)
252 2iut_A DNA translocase FTSK; n 96.7 0.006 2.1E-07 73.3 11.3 74 939-1022 345-420 (574)
253 2ius_A DNA translocase FTSK; n 96.6 0.017 5.9E-07 68.8 15.2 75 656-751 297-374 (512)
254 3sfz_A APAF-1, apoptotic pepti 96.6 0.021 7.1E-07 75.8 17.8 169 842-1047 122-321 (1249)
255 2zts_A Putative uncharacterize 96.6 0.0058 2E-07 65.4 10.0 28 586-613 26-53 (251)
256 1qhx_A CPT, protein (chloramph 96.6 0.0025 8.5E-08 64.8 6.7 25 591-615 4-28 (178)
257 2i1q_A DNA repair and recombin 96.6 0.0047 1.6E-07 69.6 9.3 29 586-614 94-122 (322)
258 1pzn_A RAD51, DNA repair and r 96.5 0.0083 2.8E-07 68.4 11.1 29 586-614 127-155 (349)
259 1vma_A Cell division protein F 96.5 0.0072 2.5E-07 67.5 10.4 98 562-665 79-196 (306)
260 2dr3_A UPF0273 protein PH0284; 96.5 0.0058 2E-07 65.3 9.2 39 874-912 19-60 (247)
261 3jvv_A Twitching mobility prot 96.5 0.0022 7.5E-08 73.4 5.6 97 879-993 124-234 (356)
262 2b8t_A Thymidine kinase; deoxy 96.4 0.005 1.7E-07 65.6 7.9 69 880-949 14-101 (223)
263 2eyu_A Twitching motility prot 96.4 0.0034 1.2E-07 68.6 6.8 72 876-947 23-108 (261)
264 3e1s_A Exodeoxyribonuclease V, 96.4 0.0017 5.8E-08 79.1 4.7 97 879-989 205-317 (574)
265 1nlf_A Regulatory protein REPA 96.4 0.014 4.9E-07 64.1 11.8 31 586-616 26-56 (279)
266 3trf_A Shikimate kinase, SK; a 96.4 0.0019 6.6E-08 66.1 4.4 32 878-909 5-36 (185)
267 2eyu_A Twitching motility prot 96.4 0.0023 7.9E-08 70.0 5.1 28 588-615 23-50 (261)
268 2ius_A DNA translocase FTSK; n 96.4 0.009 3.1E-07 71.2 10.4 75 938-1022 297-374 (512)
269 2orw_A Thymidine kinase; TMTK, 96.4 0.0026 8.9E-08 65.7 5.0 23 592-614 5-27 (184)
270 3bh0_A DNAB-like replicative h 96.4 0.026 9E-07 63.3 13.7 41 586-629 64-104 (315)
271 2i1q_A DNA repair and recombin 96.4 0.0025 8.6E-08 71.8 5.3 113 874-986 94-255 (322)
272 1cr0_A DNA primase/helicase; R 96.4 0.017 5.9E-07 64.0 12.0 31 586-616 31-61 (296)
273 3vaa_A Shikimate kinase, SK; s 96.4 0.0022 7.5E-08 66.8 4.5 33 877-909 24-56 (199)
274 2i3b_A HCR-ntpase, human cance 96.3 0.0063 2.2E-07 63.1 7.7 23 880-902 3-25 (189)
275 2fz4_A DNA repair protein RAD2 96.3 0.011 3.7E-07 63.5 9.9 33 880-912 110-142 (237)
276 1nlf_A Regulatory protein REPA 96.3 0.0067 2.3E-07 66.7 8.4 29 874-902 26-54 (279)
277 3vaa_A Shikimate kinase, SK; s 96.3 0.0019 6.5E-08 67.3 3.7 28 588-615 23-50 (199)
278 3jvv_A Twitching mobility prot 96.3 0.0021 7.2E-08 73.5 4.2 72 591-664 124-205 (356)
279 1gvn_B Zeta; postsegregational 96.3 0.0059 2E-07 67.7 7.6 38 877-914 32-69 (287)
280 3kl4_A SRP54, signal recogniti 96.3 0.01 3.4E-07 69.4 9.7 72 878-949 97-191 (433)
281 2r6a_A DNAB helicase, replicat 96.3 0.017 5.8E-07 68.3 11.9 30 586-615 199-228 (454)
282 2p5t_B PEZT; postsegregational 96.2 0.0053 1.8E-07 66.6 6.8 38 877-914 31-68 (253)
283 3dm5_A SRP54, signal recogniti 96.2 0.015 5.1E-07 68.0 10.8 75 589-666 99-193 (443)
284 2rhm_A Putative kinase; P-loop 96.2 0.0029 1E-07 65.1 4.4 32 877-908 4-35 (193)
285 2b8t_A Thymidine kinase; deoxy 96.2 0.015 5E-07 61.9 9.9 25 592-616 14-38 (223)
286 2px0_A Flagellar biosynthesis 96.2 0.027 9.2E-07 62.6 12.5 68 877-946 104-191 (296)
287 3trf_A Shikimate kinase, SK; a 96.2 0.0024 8.1E-08 65.5 3.6 26 590-615 5-30 (185)
288 2rhm_A Putative kinase; P-loop 96.2 0.0026 9E-08 65.4 3.9 28 588-615 3-30 (193)
289 2ewv_A Twitching motility prot 96.1 0.003 1E-07 72.8 4.5 75 587-664 133-218 (372)
290 3iij_A Coilin-interacting nucl 96.1 0.004 1.4E-07 63.6 5.0 31 878-908 11-41 (180)
291 1vma_A Cell division protein F 96.1 0.021 7.2E-07 63.8 11.2 72 877-948 103-197 (306)
292 2q6t_A DNAB replication FORK h 96.1 0.02 6.9E-07 67.5 11.7 42 586-629 196-237 (444)
293 3kb2_A SPBC2 prophage-derived 96.1 0.0032 1.1E-07 63.3 4.2 31 880-910 3-33 (173)
294 2p5t_B PEZT; postsegregational 96.1 0.0091 3.1E-07 64.8 7.8 40 587-632 29-68 (253)
295 1gvn_B Zeta; postsegregational 96.1 0.0076 2.6E-07 66.8 7.2 39 588-632 31-69 (287)
296 1via_A Shikimate kinase; struc 96.0 0.0037 1.3E-07 63.5 4.1 29 880-908 6-34 (175)
297 1y63_A LMAJ004144AAA protein; 96.0 0.0033 1.1E-07 64.6 3.6 31 878-908 10-41 (184)
298 3kl4_A SRP54, signal recogniti 96.0 0.014 4.7E-07 68.3 9.2 75 589-666 96-190 (433)
299 1cr0_A DNA primase/helicase; R 96.0 0.014 4.8E-07 64.7 8.9 37 874-910 31-71 (296)
300 1kag_A SKI, shikimate kinase I 96.0 0.0048 1.6E-07 62.3 4.7 29 879-907 5-33 (173)
301 3a4m_A L-seryl-tRNA(SEC) kinas 96.0 0.0087 3E-07 65.2 7.0 37 879-915 5-44 (260)
302 3a4m_A L-seryl-tRNA(SEC) kinas 95.9 0.01 3.6E-07 64.6 7.5 25 591-615 5-29 (260)
303 1y63_A LMAJ004144AAA protein; 95.9 0.0049 1.7E-07 63.4 4.6 26 590-615 10-36 (184)
304 4gp7_A Metallophosphoesterase; 95.9 0.0074 2.5E-07 61.3 5.8 20 878-897 9-28 (171)
305 3crm_A TRNA delta(2)-isopenten 95.9 0.0055 1.9E-07 68.7 5.3 36 880-915 7-42 (323)
306 2r6a_A DNAB helicase, replicat 95.9 0.015 5E-07 68.9 9.2 38 874-911 199-240 (454)
307 3iij_A Coilin-interacting nucl 95.9 0.0048 1.6E-07 62.9 4.4 26 590-615 11-36 (180)
308 1zuh_A Shikimate kinase; alpha 95.9 0.0045 1.6E-07 62.3 4.2 31 879-909 8-38 (168)
309 2r8r_A Sensor protein; KDPD, P 95.9 0.066 2.3E-06 56.8 13.1 27 591-617 7-33 (228)
310 2iyv_A Shikimate kinase, SK; t 95.9 0.005 1.7E-07 63.0 4.5 29 880-908 4-32 (184)
311 1zp6_A Hypothetical protein AT 95.9 0.0036 1.2E-07 64.3 3.5 38 877-914 8-45 (191)
312 2jv2_A Putative uncharacterize 95.9 0.012 4.3E-07 52.0 6.3 74 91-171 9-82 (83)
313 2ewv_A Twitching motility prot 95.9 0.0058 2E-07 70.3 5.4 73 875-947 133-219 (372)
314 3kb2_A SPBC2 prophage-derived 95.9 0.0044 1.5E-07 62.3 3.8 24 592-615 3-26 (173)
315 2px0_A Flagellar biosynthesis 95.8 0.028 9.7E-07 62.4 10.6 41 589-631 104-144 (296)
316 1zp6_A Hypothetical protein AT 95.8 0.0037 1.3E-07 64.2 2.9 28 587-614 6-33 (191)
317 2ze6_A Isopentenyl transferase 95.8 0.0049 1.7E-07 67.0 3.8 33 880-912 3-35 (253)
318 1g5t_A COB(I)alamin adenosyltr 95.8 0.02 6.7E-07 59.4 8.1 71 879-949 29-132 (196)
319 1aky_A Adenylate kinase; ATP:A 95.7 0.0062 2.1E-07 64.4 4.4 31 878-908 4-34 (220)
320 2cdn_A Adenylate kinase; phosp 95.7 0.0067 2.3E-07 63.1 4.6 32 878-909 20-51 (201)
321 1kag_A SKI, shikimate kinase I 95.7 0.007 2.4E-07 61.1 4.5 25 591-615 5-29 (173)
322 2zts_A Putative uncharacterize 95.7 0.012 4.2E-07 62.9 6.7 38 874-911 26-67 (251)
323 3crm_A TRNA delta(2)-isopenten 95.7 0.029 9.8E-07 62.9 9.8 25 591-615 6-30 (323)
324 2i3b_A HCR-ntpase, human cance 95.7 0.0069 2.4E-07 62.8 4.5 24 592-615 3-26 (189)
325 1ex7_A Guanylate kinase; subst 95.7 0.0086 3E-07 61.9 5.2 27 880-906 3-29 (186)
326 3lw7_A Adenylate kinase relate 95.7 0.0064 2.2E-07 61.0 4.1 29 880-909 3-31 (179)
327 1e6c_A Shikimate kinase; phosp 95.7 0.0064 2.2E-07 61.3 4.1 29 880-908 4-32 (173)
328 3umf_A Adenylate kinase; rossm 95.7 0.0058 2E-07 64.8 3.9 29 587-615 26-54 (217)
329 1via_A Shikimate kinase; struc 95.7 0.0056 1.9E-07 62.1 3.6 24 592-615 6-29 (175)
330 2iyv_A Shikimate kinase, SK; t 95.6 0.0054 1.9E-07 62.7 3.4 24 592-615 4-27 (184)
331 2q6t_A DNAB replication FORK h 95.6 0.025 8.4E-07 66.7 9.5 38 874-911 196-237 (444)
332 3be4_A Adenylate kinase; malar 95.6 0.0068 2.3E-07 64.0 4.2 31 879-909 6-36 (217)
333 3cm0_A Adenylate kinase; ATP-b 95.6 0.0064 2.2E-07 62.1 3.8 30 879-908 5-34 (186)
334 2vli_A Antibiotic resistance p 95.6 0.0061 2.1E-07 62.1 3.6 29 879-907 6-34 (183)
335 1knq_A Gluconate kinase; ALFA/ 95.6 0.0093 3.2E-07 60.4 4.9 26 590-615 8-33 (175)
336 2c95_A Adenylate kinase 1; tra 95.6 0.0076 2.6E-07 62.1 4.3 31 879-909 10-40 (196)
337 3dl0_A Adenylate kinase; phosp 95.6 0.0078 2.7E-07 63.3 4.4 30 880-909 2-31 (216)
338 1zuh_A Shikimate kinase; alpha 95.6 0.006 2.1E-07 61.4 3.4 25 591-615 8-32 (168)
339 3sr0_A Adenylate kinase; phosp 95.6 0.0073 2.5E-07 63.5 4.1 35 880-916 2-36 (206)
340 1tev_A UMP-CMP kinase; ploop, 95.6 0.0072 2.5E-07 62.0 4.0 30 879-908 4-33 (196)
341 1zd8_A GTP:AMP phosphotransfer 95.5 0.0076 2.6E-07 64.1 4.2 32 878-909 7-38 (227)
342 1w36_D RECD, exodeoxyribonucle 95.5 0.018 6.2E-07 70.6 8.2 24 879-902 165-188 (608)
343 2a5y_B CED-4; apoptosis; HET: 95.5 0.057 1.9E-06 65.4 12.5 166 847-1047 131-330 (549)
344 2cdn_A Adenylate kinase; phosp 95.5 0.0069 2.4E-07 63.0 3.8 26 590-615 20-45 (201)
345 3t61_A Gluconokinase; PSI-biol 95.5 0.0074 2.5E-07 62.8 4.0 25 591-615 19-43 (202)
346 3umf_A Adenylate kinase; rossm 95.5 0.0075 2.6E-07 63.9 4.1 40 876-917 27-66 (217)
347 1tev_A UMP-CMP kinase; ploop, 95.5 0.0073 2.5E-07 62.0 3.9 26 590-615 3-28 (196)
348 3t61_A Gluconokinase; PSI-biol 95.5 0.0094 3.2E-07 62.0 4.7 30 879-908 19-48 (202)
349 4eun_A Thermoresistant glucoki 95.5 0.01 3.4E-07 61.8 5.0 27 589-615 28-54 (200)
350 4gp7_A Metallophosphoesterase; 95.5 0.017 5.8E-07 58.6 6.5 22 587-608 6-27 (171)
351 1ak2_A Adenylate kinase isoenz 95.5 0.0086 2.9E-07 64.0 4.5 31 879-909 17-47 (233)
352 1ly1_A Polynucleotide kinase; 95.5 0.0081 2.8E-07 60.8 4.1 22 591-612 3-24 (181)
353 2c95_A Adenylate kinase 1; tra 95.5 0.008 2.7E-07 61.9 4.1 26 590-615 9-34 (196)
354 2pt7_A CAG-ALFA; ATPase, prote 95.5 0.0092 3.2E-07 67.5 4.8 72 877-948 170-251 (330)
355 2pt5_A Shikimate kinase, SK; a 95.5 0.009 3.1E-07 59.9 4.3 29 880-908 2-30 (168)
356 1aky_A Adenylate kinase; ATP:A 95.5 0.0083 2.8E-07 63.4 4.2 26 590-615 4-29 (220)
357 2ze6_A Isopentenyl transferase 95.5 0.0075 2.6E-07 65.5 3.9 24 592-615 3-26 (253)
358 3fb4_A Adenylate kinase; psych 95.5 0.0085 2.9E-07 62.9 4.2 30 880-909 2-31 (216)
359 3bgw_A DNAB-like replicative h 95.4 0.081 2.8E-06 62.2 13.0 41 586-629 193-233 (444)
360 1kht_A Adenylate kinase; phosp 95.4 0.0081 2.8E-07 61.4 3.8 26 591-616 4-29 (192)
361 1q57_A DNA primase/helicase; d 95.4 0.074 2.5E-06 63.6 12.8 42 586-629 238-279 (503)
362 3sr0_A Adenylate kinase; phosp 95.4 0.0072 2.4E-07 63.6 3.4 23 593-615 3-25 (206)
363 3lw7_A Adenylate kinase relate 95.4 0.0074 2.5E-07 60.5 3.4 23 592-615 3-25 (179)
364 1ly1_A Polynucleotide kinase; 95.4 0.0071 2.4E-07 61.3 3.2 27 880-906 4-31 (181)
365 3bh0_A DNAB-like replicative h 95.4 0.052 1.8E-06 60.9 10.6 38 874-911 64-104 (315)
366 1kht_A Adenylate kinase; phosp 95.4 0.0079 2.7E-07 61.6 3.6 25 879-903 4-28 (192)
367 1e6c_A Shikimate kinase; phosp 95.4 0.0083 2.8E-07 60.5 3.6 24 592-615 4-27 (173)
368 2bbw_A Adenylate kinase 4, AK4 95.4 0.0088 3E-07 64.4 4.0 26 590-615 27-52 (246)
369 3cm0_A Adenylate kinase; ATP-b 95.4 0.0099 3.4E-07 60.7 4.2 25 591-615 5-29 (186)
370 2bwj_A Adenylate kinase 5; pho 95.3 0.0096 3.3E-07 61.4 4.1 30 879-908 13-42 (199)
371 1qf9_A UMP/CMP kinase, protein 95.3 0.011 3.8E-07 60.5 4.4 26 590-615 6-31 (194)
372 1zd8_A GTP:AMP phosphotransfer 95.3 0.0084 2.9E-07 63.7 3.6 26 590-615 7-32 (227)
373 2bwj_A Adenylate kinase 5; pho 95.3 0.0093 3.2E-07 61.5 3.8 25 591-615 13-37 (199)
374 2ga8_A Hypothetical 39.9 kDa p 95.3 0.0059 2E-07 69.2 2.4 30 879-908 25-54 (359)
375 3tlx_A Adenylate kinase 2; str 95.3 0.011 3.7E-07 63.8 4.4 32 877-908 28-59 (243)
376 1qf9_A UMP/CMP kinase, protein 95.3 0.0098 3.3E-07 60.9 3.9 31 879-909 7-37 (194)
377 1knq_A Gluconate kinase; ALFA/ 95.3 0.011 3.8E-07 59.8 4.2 34 879-914 9-42 (175)
378 4eun_A Thermoresistant glucoki 95.3 0.012 4E-07 61.3 4.4 35 878-914 29-63 (200)
379 1nks_A Adenylate kinase; therm 95.3 0.0085 2.9E-07 61.4 3.3 25 592-616 3-27 (194)
380 1zak_A Adenylate kinase; ATP:A 95.2 0.01 3.5E-07 62.8 3.9 26 590-615 5-30 (222)
381 3e1s_A Exodeoxyribonuclease V, 95.2 0.014 4.7E-07 71.1 5.6 27 591-617 205-231 (574)
382 2pez_A Bifunctional 3'-phospho 95.2 0.015 5E-07 59.3 4.9 27 589-615 4-30 (179)
383 1zak_A Adenylate kinase; ATP:A 95.2 0.0094 3.2E-07 63.1 3.6 30 879-908 6-35 (222)
384 1ukz_A Uridylate kinase; trans 95.2 0.012 4E-07 61.2 4.3 31 879-909 16-46 (203)
385 3be4_A Adenylate kinase; malar 95.2 0.0093 3.2E-07 63.0 3.4 25 591-615 6-30 (217)
386 3tlx_A Adenylate kinase 2; str 95.2 0.011 3.9E-07 63.6 4.2 27 589-615 28-54 (243)
387 1ak2_A Adenylate kinase isoenz 95.2 0.012 4.2E-07 62.8 4.3 25 591-615 17-41 (233)
388 3uie_A Adenylyl-sulfate kinase 95.1 0.021 7.2E-07 59.3 6.0 37 878-914 25-64 (200)
389 1e4v_A Adenylate kinase; trans 95.1 0.012 4.1E-07 61.9 4.1 30 880-909 2-31 (214)
390 3rlf_A Maltose/maltodextrin im 95.1 0.015 5.1E-07 66.7 5.2 25 878-902 29-53 (381)
391 4g1u_C Hemin import ATP-bindin 95.1 0.024 8.1E-07 62.1 6.5 26 877-902 36-61 (266)
392 3uie_A Adenylyl-sulfate kinase 95.1 0.013 4.4E-07 61.0 4.2 28 588-615 23-50 (200)
393 3fb4_A Adenylate kinase; psych 95.1 0.0097 3.3E-07 62.5 3.2 23 593-615 3-25 (216)
394 1ukz_A Uridylate kinase; trans 95.1 0.013 4.6E-07 60.8 4.3 26 590-615 15-40 (203)
395 3gfo_A Cobalt import ATP-bindi 95.1 0.036 1.2E-06 60.9 7.8 26 877-902 33-58 (275)
396 3dl0_A Adenylate kinase; phosp 95.1 0.0093 3.2E-07 62.7 3.0 24 592-615 2-25 (216)
397 1g5t_A COB(I)alamin adenosyltr 95.0 0.07 2.4E-06 55.3 9.4 25 591-615 29-53 (196)
398 2pt5_A Shikimate kinase, SK; a 95.0 0.011 3.7E-07 59.4 3.2 24 592-615 2-25 (168)
399 2xau_A PRE-mRNA-splicing facto 95.0 0.039 1.3E-06 69.6 9.0 59 841-901 72-132 (773)
400 1s96_A Guanylate kinase, GMP k 95.0 0.048 1.6E-06 57.8 8.3 102 875-1001 13-151 (219)
401 3foz_A TRNA delta(2)-isopenten 95.0 0.014 4.9E-07 64.8 4.3 37 879-915 11-47 (316)
402 2plr_A DTMP kinase, probable t 95.0 0.014 4.7E-07 60.8 4.0 26 591-616 5-30 (213)
403 2vli_A Antibiotic resistance p 95.0 0.009 3.1E-07 60.8 2.5 25 591-615 6-30 (183)
404 2gxq_A Heat resistant RNA depe 95.0 0.047 1.6E-06 56.5 8.2 18 879-896 39-56 (207)
405 2v54_A DTMP kinase, thymidylat 95.0 0.016 5.6E-07 60.0 4.5 34 878-911 4-38 (204)
406 2pez_A Bifunctional 3'-phospho 94.9 0.018 6E-07 58.6 4.6 36 878-913 5-43 (179)
407 2pbr_A DTMP kinase, thymidylat 94.9 0.017 5.9E-07 59.1 4.6 31 880-910 2-35 (195)
408 2jaq_A Deoxyguanosine kinase; 94.9 0.014 4.8E-07 60.4 3.9 29 880-908 2-30 (205)
409 2xb4_A Adenylate kinase; ATP-b 94.9 0.015 5E-07 61.8 4.1 29 880-908 2-30 (223)
410 3fvq_A Fe(3+) IONS import ATP- 94.9 0.021 7.2E-07 65.0 5.6 25 878-902 30-54 (359)
411 3b6e_A Interferon-induced heli 94.9 0.041 1.4E-06 57.2 7.5 24 879-902 49-72 (216)
412 3rlf_A Maltose/maltodextrin im 94.9 0.11 3.8E-06 59.5 11.5 29 587-615 26-54 (381)
413 3a8t_A Adenylate isopentenyltr 94.8 0.031 1E-06 62.9 6.5 25 591-615 41-65 (339)
414 1cke_A CK, MSSA, protein (cyti 94.8 0.016 5.5E-07 61.2 4.1 30 879-908 6-35 (227)
415 4a1f_A DNAB helicase, replicat 94.8 0.05 1.7E-06 61.5 8.2 31 586-616 42-72 (338)
416 2wwf_A Thymidilate kinase, put 94.8 0.016 5.6E-07 60.4 4.0 27 590-616 10-36 (212)
417 3c8u_A Fructokinase; YP_612366 94.8 0.028 9.7E-07 58.8 5.8 27 589-615 21-47 (208)
418 1nks_A Adenylate kinase; therm 94.8 0.011 3.8E-07 60.4 2.5 34 880-913 3-39 (194)
419 2qor_A Guanylate kinase; phosp 94.8 0.017 5.8E-07 60.3 3.9 27 589-615 11-37 (204)
420 1kgd_A CASK, peripheral plasma 94.7 0.018 6.1E-07 58.9 4.0 25 591-615 6-30 (180)
421 2pbr_A DTMP kinase, thymidylat 94.7 0.021 7.2E-07 58.4 4.5 23 593-615 3-25 (195)
422 2jaq_A Deoxyguanosine kinase; 94.7 0.016 5.5E-07 59.9 3.6 24 592-615 2-25 (205)
423 2z0h_A DTMP kinase, thymidylat 94.7 0.022 7.4E-07 58.6 4.6 31 881-911 3-36 (197)
424 1nn5_A Similar to deoxythymidy 94.6 0.019 6.4E-07 60.0 4.0 27 590-616 9-35 (215)
425 2grj_A Dephospho-COA kinase; T 94.6 0.019 6.3E-07 59.7 3.8 33 593-633 15-47 (192)
426 2fz4_A DNA repair protein RAD2 94.6 0.052 1.8E-06 58.2 7.4 24 592-615 110-133 (237)
427 2yvu_A Probable adenylyl-sulfa 94.6 0.022 7.5E-07 58.3 4.3 28 589-616 12-39 (186)
428 3fvq_A Fe(3+) IONS import ATP- 94.6 0.15 5E-06 58.1 11.4 29 587-615 27-55 (359)
429 2j41_A Guanylate kinase; GMP, 94.6 0.02 6.7E-07 59.4 4.0 27 588-614 4-30 (207)
430 2j37_W Signal recognition part 94.6 0.1 3.5E-06 62.2 10.5 72 878-949 101-195 (504)
431 2ga8_A Hypothetical 39.9 kDa p 94.6 0.036 1.2E-06 62.7 6.2 25 591-615 25-49 (359)
432 2if2_A Dephospho-COA kinase; a 94.6 0.02 6.7E-07 59.5 3.9 29 880-909 3-31 (204)
433 1e4v_A Adenylate kinase; trans 94.5 0.016 5.4E-07 61.0 3.1 24 592-615 2-25 (214)
434 2pl3_A Probable ATP-dependent 94.5 0.1 3.5E-06 55.4 9.5 55 841-896 25-80 (236)
435 3nwj_A ATSK2; P loop, shikimat 94.5 0.024 8.2E-07 61.4 4.5 32 878-909 48-79 (250)
436 1cke_A CK, MSSA, protein (cyti 94.5 0.029 1E-06 59.1 5.1 25 591-615 6-30 (227)
437 2pt7_A CAG-ALFA; ATPase, prote 94.5 0.025 8.4E-07 64.0 4.7 70 590-665 171-250 (330)
438 2v3c_C SRP54, signal recogniti 94.5 0.068 2.3E-06 62.6 8.6 35 878-912 99-136 (432)
439 1tf7_A KAIC; homohexamer, hexa 94.5 0.095 3.2E-06 63.1 10.1 112 875-992 36-187 (525)
440 3r20_A Cytidylate kinase; stru 94.5 0.024 8.1E-07 60.7 4.3 30 879-908 10-39 (233)
441 2z0h_A DTMP kinase, thymidylat 94.5 0.028 9.6E-07 57.7 4.7 23 593-615 3-25 (197)
442 3e70_C DPA, signal recognition 94.4 0.14 4.8E-06 57.7 10.7 30 588-617 127-156 (328)
443 2oap_1 GSPE-2, type II secreti 94.4 0.03 1E-06 67.0 5.5 70 878-947 260-343 (511)
444 2xb4_A Adenylate kinase; ATP-b 94.4 0.027 9.3E-07 59.7 4.5 23 593-615 3-25 (223)
445 1jjv_A Dephospho-COA kinase; P 94.4 0.022 7.4E-07 59.3 3.7 28 880-908 4-31 (206)
446 2bbw_A Adenylate kinase 4, AK4 94.3 0.023 7.9E-07 61.1 3.9 30 878-907 27-56 (246)
447 3tui_C Methionine import ATP-b 94.3 0.18 6E-06 57.5 11.3 29 587-615 51-79 (366)
448 1p9r_A General secretion pathw 94.3 0.098 3.3E-06 60.9 9.4 71 591-664 168-245 (418)
449 2if2_A Dephospho-COA kinase; a 94.3 0.02 6.8E-07 59.5 3.2 23 592-615 3-25 (204)
450 2it1_A 362AA long hypothetical 94.3 0.21 7E-06 57.0 11.9 29 587-615 26-54 (362)
451 3tr0_A Guanylate kinase, GMP k 94.3 0.025 8.6E-07 58.6 4.0 25 590-614 7-31 (205)
452 2xxa_A Signal recognition part 94.3 0.16 5.6E-06 59.3 11.3 75 588-664 98-192 (433)
453 1z47_A CYSA, putative ABC-tran 94.3 0.028 9.6E-07 64.0 4.6 109 875-993 38-209 (355)
454 3ake_A Cytidylate kinase; CMP 94.3 0.027 9.3E-07 58.4 4.2 30 880-909 4-33 (208)
455 3tau_A Guanylate kinase, GMP k 94.2 0.023 7.7E-07 59.6 3.4 26 590-615 8-33 (208)
456 1ls1_A Signal recognition part 94.2 0.14 4.8E-06 56.7 10.1 72 878-949 98-192 (295)
457 1lvg_A Guanylate kinase, GMP k 94.2 0.024 8.3E-07 59.0 3.6 26 590-615 4-29 (198)
458 2plr_A DTMP kinase, probable t 94.2 0.034 1.2E-06 57.7 4.8 31 879-909 5-37 (213)
459 3ney_A 55 kDa erythrocyte memb 94.2 0.033 1.1E-06 58.0 4.5 76 866-944 7-118 (197)
460 3llm_A ATP-dependent RNA helic 94.2 0.14 4.7E-06 54.6 9.5 21 879-899 77-97 (235)
461 2v54_A DTMP kinase, thymidylat 94.1 0.025 8.7E-07 58.5 3.6 25 590-614 4-28 (204)
462 1m7g_A Adenylylsulfate kinase; 94.1 0.047 1.6E-06 57.1 5.7 37 878-914 25-65 (211)
463 1vt4_I APAF-1 related killer D 94.1 0.072 2.4E-06 68.0 8.1 43 557-613 131-173 (1221)
464 1xx6_A Thymidine kinase; NESG, 94.1 0.046 1.6E-06 56.6 5.5 68 880-949 10-93 (191)
465 2wwf_A Thymidilate kinase, put 94.1 0.014 4.7E-07 61.0 1.5 28 878-905 10-37 (212)
466 3e70_C DPA, signal recognition 94.1 0.09 3.1E-06 59.2 8.3 26 877-902 128-153 (328)
467 1t6n_A Probable ATP-dependent 94.1 0.18 6E-06 52.8 10.1 60 841-901 14-74 (220)
468 2grj_A Dephospho-COA kinase; T 94.1 0.031 1.1E-06 58.0 4.1 29 880-908 14-42 (192)
469 1w4r_A Thymidine kinase; type 94.1 0.091 3.1E-06 54.3 7.5 67 880-949 22-103 (195)
470 1m7g_A Adenylylsulfate kinase; 94.1 0.031 1E-06 58.6 4.1 28 588-615 23-50 (211)
471 3r20_A Cytidylate kinase; stru 94.1 0.039 1.3E-06 59.0 4.9 26 590-615 9-34 (233)
472 1w36_D RECD, exodeoxyribonucle 94.0 0.13 4.3E-06 63.1 10.1 25 591-615 165-189 (608)
473 1hv8_A Putative ATP-dependent 94.0 0.088 3E-06 59.3 8.2 33 879-911 45-82 (367)
474 3thx_B DNA mismatch repair pro 94.0 0.17 5.8E-06 64.5 11.5 27 587-613 670-696 (918)
475 1htw_A HI0065; nucleotide-bind 94.0 0.033 1.1E-06 55.8 4.1 29 587-615 30-58 (158)
476 3bgw_A DNAB-like replicative h 94.0 0.14 4.7E-06 60.3 10.0 38 874-911 193-233 (444)
477 3nwj_A ATSK2; P loop, shikimat 94.0 0.026 8.8E-07 61.1 3.5 25 591-615 49-73 (250)
478 3a8t_A Adenylate isopentenyltr 94.0 0.024 8.3E-07 63.8 3.3 35 880-914 42-76 (339)
479 3zvl_A Bifunctional polynucleo 94.0 0.047 1.6E-06 63.7 5.9 28 588-615 256-283 (416)
480 1w4r_A Thymidine kinase; type 94.0 0.079 2.7E-06 54.8 6.9 26 592-617 22-48 (195)
481 1vt4_I APAF-1 related killer D 94.0 0.13 4.4E-06 65.8 10.0 43 847-901 131-173 (1221)
482 2j37_W Signal recognition part 94.0 0.16 5.5E-06 60.4 10.5 75 589-666 100-194 (504)
483 2xxa_A Signal recognition part 94.0 0.15 5.1E-06 59.7 10.1 72 877-948 99-194 (433)
484 1uj2_A Uridine-cytidine kinase 94.0 0.04 1.4E-06 59.5 4.9 45 590-634 22-68 (252)
485 1uj2_A Uridine-cytidine kinase 93.9 0.042 1.4E-06 59.3 5.0 38 879-916 23-68 (252)
486 3tui_C Methionine import ATP-b 93.9 0.038 1.3E-06 63.0 4.7 25 878-902 54-78 (366)
487 1v43_A Sugar-binding transport 93.9 0.059 2E-06 61.7 6.3 107 875-993 34-205 (372)
488 1z6g_A Guanylate kinase; struc 93.9 0.031 1E-06 59.1 3.7 28 587-614 20-47 (218)
489 2yhs_A FTSY, cell division pro 93.9 0.1 3.4E-06 61.7 8.3 31 587-617 290-320 (503)
490 2qt1_A Nicotinamide riboside k 93.9 0.038 1.3E-06 57.6 4.3 27 588-614 19-45 (207)
491 1odf_A YGR205W, hypothetical 3 93.9 0.061 2.1E-06 59.5 6.2 27 589-615 30-56 (290)
492 2bdt_A BH3686; alpha-beta prot 93.9 0.029 9.8E-07 57.5 3.3 23 592-614 4-26 (189)
493 1ex7_A Guanylate kinase; subst 93.8 0.032 1.1E-06 57.5 3.7 25 591-615 2-26 (186)
494 3thx_B DNA mismatch repair pro 93.8 0.08 2.7E-06 67.5 8.0 108 878-994 673-800 (918)
495 2it1_A 362AA long hypothetical 93.8 0.056 1.9E-06 61.7 5.9 25 878-902 29-53 (362)
496 2yhs_A FTSY, cell division pro 93.8 0.13 4.4E-06 60.8 9.0 73 877-949 292-387 (503)
497 1zu4_A FTSY; GTPase, signal re 93.8 0.14 4.8E-06 57.5 9.0 41 587-630 102-142 (320)
498 1qde_A EIF4A, translation init 93.8 0.18 6.3E-06 52.8 9.5 54 841-895 14-68 (224)
499 1rz3_A Hypothetical protein rb 93.7 0.063 2.2E-06 55.8 5.7 27 589-615 21-47 (201)
500 2v9p_A Replication protein E1; 93.7 0.039 1.3E-06 61.4 4.3 29 586-614 122-150 (305)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.2e-86 Score=823.17 Aligned_cols=546 Identities=34% Similarity=0.541 Sum_probs=427.5
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
...+++++|++.++++|.+.+...+. .+++|..+|..+|+|||||||||||||+|||++|++++ .+++.++|
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~--~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg------~~~~~v~~ 271 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLR--HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG------AFFFLING 271 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHH--CCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT------CEEEEEEH
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHcc--CHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC------CeEEEEEh
Confidence 35688999999999999998765332 46789999999999999999999999999999999988 89999999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
.++.+.+.+..++.++.+|+.|.+++|+||||||+|.|++++....+ .....+...|+..|+.+.... +
T Consensus 272 ~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~----~~~~riv~~LL~~mdg~~~~~-------~ 340 (806)
T 3cf2_A 272 PEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG----EVERRIVSQLLTLMDGLKQRA-------H 340 (806)
T ss_dssp HHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCC----TTHHHHHHHHHTHHHHCCGGG-------C
T ss_pred HHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCC----hHHHHHHHHHHHHHhcccccC-------C
Confidence 99999999999999999999999999999999999999976544332 233577888889999876532 5
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
|+||++||+++.||++|+|+|||+++|+++.|+.++|.+||+.++.+..+. .+..+..+|..|+||+++||..+|++|+
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~GfsgaDL~~Lv~eA~ 419 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAA 419 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988765432 3345889999999999999999999999
Q ss_pred HHHhcccccCCC------ccccccccccchhhhHhhhhccccceeccccccccCCCCCCCCCCCChhHHHHHHHHHHhcC
Q 001162 790 HAAVGRYLHSDS------SFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELP 863 (1134)
Q Consensus 790 ~~a~~r~~~~~~------~~~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~~~~~~~~~~i~gl~~~k~~l~~~i~~~ 863 (1134)
..++.|...... .........++.+||..|+..+.|+.+++.....+ .+.|++++|++++++.|.+.+.+|
T Consensus 420 ~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p---~v~w~diggl~~~k~~l~e~v~~p 496 (806)
T 3cf2_A 420 LQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVP---QVTWEDIGGLEDVKRELQELVQYP 496 (806)
T ss_dssp HHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCC---CCCSTTCCSCHHHHHHHTTTTTTT
T ss_pred HHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCC---CCCHHHhCCHHHHHHHHHHHHHhh
Confidence 999877542110 01111235688999999999999999998766554 589999999999999999999999
Q ss_pred CCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEE
Q 001162 864 SKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFF 943 (1134)
Q Consensus 864 ~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfi 943 (1134)
+++++.|.+.+.++++|+|||||||||||++|+++|.+++.+|+.+++++++++|+|++++.++.+|+.|+..+||||||
T Consensus 497 ~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~Iifi 576 (806)
T 3cf2_A 497 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFF 576 (806)
T ss_dssp TTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEEC
T ss_pred hhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCC---CCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHH
Q 001162 944 DEFDSIAPKRGH---DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDI 1020 (1134)
Q Consensus 944 DEid~l~~~r~~---~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~I 1020 (1134)
||||+++++|+. +..+..+|++++||++||++...++|+||||||+|+.||+|++||||||+.|+|++|+.++|.+|
T Consensus 577 DEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~i 656 (806)
T 3cf2_A 577 DELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAI 656 (806)
T ss_dssp SCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHT
T ss_pred hhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHH
Confidence 999999999864 34567889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCC--------------CCCCCcccccHHHH
Q 001162 1021 LKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDS--------------NEPGKMPVITDALL 1086 (1134)
Q Consensus 1021 l~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~--------------~~~~~~~~it~e~l 1086 (1134)
|+.++++.++..++|++.||+.|+||||+||.++|++|++.|+++.+..... ......+.|+.+||
T Consensus 657 l~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df 736 (806)
T 3cf2_A 657 LKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHF 736 (806)
T ss_dssp TTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----CC
T ss_pred HHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHH
Confidence 9999999999999999999999999999999999999999999998753211 11223467999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhhcccch
Q 001162 1087 KSIASKARPSVSEAEKLRLYSIYGQFLDSKKS 1118 (1134)
Q Consensus 1087 ~~al~~~~ps~~~~~~~~~~~~~~~f~~~r~~ 1118 (1134)
..|++.++||++++++++|++|.++|..+|..
T Consensus 737 ~~al~~~~pSvs~~~l~~y~~~~~~f~~~~~~ 768 (806)
T 3cf2_A 737 EEAMRFARRSVSDNDIRKYEMFAQTLQQSRGF 768 (806)
T ss_dssp TTTC---------------CCCC---------
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHhcccCc
Confidence 99999999999999999999999999998854
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=5.8e-61 Score=608.29 Aligned_cols=544 Identities=33% Similarity=0.532 Sum_probs=432.6
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s 630 (1134)
..+.+++|.+.+++.+.+.+...+. .+.+|..+++.++.++||+||||||||++++++|+.++ .+++.++|.
T Consensus 201 v~~~di~G~~~~~~~l~e~i~~~l~--~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~------~~~i~v~~~ 272 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMVELPLR--HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG------AFFFLINGP 272 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHHHHHHH--CGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT------CEEEEEEHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhh--CHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC------CcEEEEEch
Confidence 4578999999999999998866332 45688899999999999999999999999999999886 778999999
Q ss_pred cccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcE
Q 001162 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1134)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1134)
.+.+...+.....+..+|+.+....|+++||||+|.+++.+... .......+...|..+++..... ..+
T Consensus 273 ~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~----~~~~~~~~~~~Ll~ll~g~~~~-------~~v 341 (806)
T 1ypw_A 273 EIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQR-------AHV 341 (806)
T ss_dssp HHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC----CSHHHHHHHHHHHHHHHSSCTT-------SCC
T ss_pred HhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc----cchHHHHHHHHHHHHhhhhccc-------ccE
Confidence 99988888899999999999999999999999999998643321 2233456777788888765432 258
Q ss_pred EEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHH
Q 001162 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 711 ~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~ 790 (1134)
++|++||+++.+++++++++||+..+.++.|+.++|.+|++.++....+. .+..+..++..++||+++|+..++..+..
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~g~dl~~l~~ea~~ 420 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAAL 420 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHhhcCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887654332 33347789999999999999999999988
Q ss_pred HHhcccccCCCc------cccccccccchhhhHhhhhccccceeccccccccCCCCCCCCCCCChhHHHHHHHHHHhcCC
Q 001162 791 AAVGRYLHSDSS------FEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPS 864 (1134)
Q Consensus 791 ~a~~r~~~~~~~------~~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~~~~~~~~~~i~gl~~~k~~l~~~i~~~~ 864 (1134)
.+..+....... ........++.+||..++....|...+...... +...|++++|++++++.|.+.+.++.
T Consensus 421 ~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~---~~v~~~di~gl~~vk~~l~~~v~~~~ 497 (806)
T 1ypw_A 421 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEV---PQVTWEDIGGLEDVKRELQELVQYPV 497 (806)
T ss_dssp HHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCC---CCCSSCSSSCCCCHHHHHHTTTTSSS
T ss_pred HHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCchhhhhhcccC---ccccccccccchhhhhhHHHHHHhhh
Confidence 877653321100 001123457788999999888887766554433 45899999999999999999999999
Q ss_pred CchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEc
Q 001162 865 KFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFD 944 (1134)
Q Consensus 865 ~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiD 944 (1134)
.++..+...++.++.++||+||||||||++|+++|++++.+|+.++++++.++|+|+++..++.+|+.|+...|||||||
T Consensus 498 ~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iD 577 (806)
T 1ypw_A 498 EHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFD 577 (806)
T ss_dssp SSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCS
T ss_pred hchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCC---CcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHH
Q 001162 945 EFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDIL 1021 (1134)
Q Consensus 945 Eid~l~~~r~~~~---~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il 1021 (1134)
|+|+++..|+... .+...+++++||++||++....+++||+|||+|+.||++++|||||++.|+|++|+.++|..||
T Consensus 578 Eid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il 657 (806)
T 1ypw_A 578 ELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAIL 657 (806)
T ss_dssp SHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHT
T ss_pred ChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHH
Confidence 9999999886543 2456899999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCC--------------CCCCCcccccHHHHH
Q 001162 1022 KVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDS--------------NEPGKMPVITDALLK 1087 (1134)
Q Consensus 1022 ~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~--------------~~~~~~~~it~e~l~ 1087 (1134)
+.++++.++..+++++.|++.++||+|+||.++|++|++.|+++.+..... ......+.|+.+||.
T Consensus 658 ~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~ 737 (806)
T 1ypw_A 658 KANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFE 737 (806)
T ss_dssp TTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC------------------------CCTTTTTTSSC
T ss_pred HHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccCccCHHHHH
Confidence 999999988889999999999999999999999999999999875432110 011223579999999
Q ss_pred HHHhhcCCCCcHHHHHHHHHHHHHhhcccc
Q 001162 1088 SIASKARPSVSEAEKLRLYSIYGQFLDSKK 1117 (1134)
Q Consensus 1088 ~al~~~~ps~~~~~~~~~~~~~~~f~~~r~ 1117 (1134)
.|++..+|+++++++.+|++|.++|...|+
T Consensus 738 ~a~~~~~~svs~~~~~~ye~~~~~~~~~~~ 767 (806)
T 1ypw_A 738 EAMRFARRSVSDNDIRKYEMFAQTLQQSRG 767 (806)
T ss_dssp CCCCC-------------------------
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999988775
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-48 Score=449.15 Aligned_cols=247 Identities=38% Similarity=0.614 Sum_probs=233.1
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchh
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 917 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~ 917 (1134)
.+.+.|+||||++++++.|++.+.+|+++|++|.+.|.++++|+|||||||||||++|+|+|++++.+|+.++++++.++
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk 221 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK 221 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCc---chhhHHHhHhhhcccccccccEEEEEecCCCCccc
Q 001162 918 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLD 994 (1134)
Q Consensus 918 ~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~---~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld 994 (1134)
|+|++++.++++|..|+..+||||||||+|+++++|+.+..+ ...+++++||++||++...++|+||||||+|+.||
T Consensus 222 ~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LD 301 (405)
T 4b4t_J 222 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILD 301 (405)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSC
T ss_pred ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCC
Confidence 999999999999999999999999999999999998665433 34678999999999999999999999999999999
Q ss_pred hhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 001162 995 AALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNE 1074 (1134)
Q Consensus 995 ~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~ 1074 (1134)
||++||||||+.|+|++|+.++|.+||+.+++++++..++|++.||+.|+||||+||+++|++|++.|+++
T Consensus 302 pAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~--------- 372 (405)
T 4b4t_J 302 PALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE--------- 372 (405)
T ss_dssp HHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT---------
T ss_pred HhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCcccccHHHHHHHHhhcCC
Q 001162 1075 PGKMPVITDALLKSIASKARP 1095 (1134)
Q Consensus 1075 ~~~~~~it~e~l~~al~~~~p 1095 (1134)
++..||.+||..|++++.+
T Consensus 373 --~~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 373 --RRIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp --TCSBCCHHHHHHHHHHHHH
T ss_pred --CCCCcCHHHHHHHHHHHhC
Confidence 2357999999999987644
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-48 Score=445.09 Aligned_cols=251 Identities=34% Similarity=0.576 Sum_probs=235.2
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchh
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 917 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~ 917 (1134)
.+.+.|+||||++++++.|++.+.+|++++++|...+.++++|+|||||||||||++|+|+|++++.+|+.++++++.++
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk 255 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQK 255 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCS
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhc
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCC---cchhhHHHhHhhhcccccccccEEEEEecCCCCccc
Q 001162 918 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNT---GVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLD 994 (1134)
Q Consensus 918 ~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~---~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld 994 (1134)
|+|++++.++.+|..|+..+||||||||+|+++++|+.+.. ....+++++||++||++...++|+||+|||+|+.||
T Consensus 256 ~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LD 335 (437)
T 4b4t_I 256 YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLD 335 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCC
T ss_pred cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcC
Confidence 99999999999999999999999999999999999865433 344688999999999999999999999999999999
Q ss_pred hhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 001162 995 AALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNE 1074 (1134)
Q Consensus 995 ~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~ 1074 (1134)
||++||||||+.|+|++|+.++|.+||+.+++++++..++|++.||..|+||||+||+++|++|++.|+++
T Consensus 336 pALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~--------- 406 (437)
T 4b4t_I 336 PALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE--------- 406 (437)
T ss_dssp TTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT---------
T ss_pred HHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCcccccHHHHHHHHhhcCCCCcH
Q 001162 1075 PGKMPVITDALLKSIASKARPSVSE 1099 (1134)
Q Consensus 1075 ~~~~~~it~e~l~~al~~~~ps~~~ 1099 (1134)
....||.+||..|++++.|+..+
T Consensus 407 --~~~~It~eDf~~Al~rv~~~~~~ 429 (437)
T 4b4t_I 407 --RRMQVTAEDFKQAKERVMKNKVE 429 (437)
T ss_dssp --TCSCBCHHHHHHHHHHHHHHHCC
T ss_pred --CCCccCHHHHHHHHHHHhCCCCh
Confidence 23569999999999887665443
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-46 Score=440.53 Aligned_cols=256 Identities=36% Similarity=0.608 Sum_probs=234.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
+.+.|+||||++++++.|++.+.+|++++++|...|+++++|+|||||||||||++|+++|++++.+|+.+++++++++|
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~ 255 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKY 255 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSS
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCC---cchhhHHHhHhhhcccccccccEEEEEecCCCCccch
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNT---GVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~---~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~ 995 (1134)
+|+++..++.+|..|+..+||||||||+|+++++|..+.. ....+++++||++||++...++|+||+|||+|+.|||
T Consensus 256 ~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDp 335 (437)
T 4b4t_L 256 IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDP 335 (437)
T ss_dssp SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCT
T ss_pred chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCH
Confidence 9999999999999999999999999999999999865433 3356789999999999999999999999999999999
Q ss_pred hhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 001162 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEP 1075 (1134)
Q Consensus 996 allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 1075 (1134)
|++||||||+.|+||+|+.++|.+||+.+++++++..++|++.||+.|+||||+||+++|++|++.|+++
T Consensus 336 AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~---------- 405 (437)
T 4b4t_L 336 ALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD---------- 405 (437)
T ss_dssp TTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT----------
T ss_pred HHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCcccccHHHHHHHHhhcCCCCcHHHHHHH
Q 001162 1076 GKMPVITDALLKSIASKARPSVSEAEKLRL 1105 (1134)
Q Consensus 1076 ~~~~~it~e~l~~al~~~~ps~~~~~~~~~ 1105 (1134)
+...||.+||..|++++.|+...+....|
T Consensus 406 -~~~~i~~~d~~~Al~~v~~~~k~e~~~e~ 434 (437)
T 4b4t_L 406 -DRDHINPDDLMKAVRKVAEVKKLEGTIEY 434 (437)
T ss_dssp -TCSSBCHHHHHHHHHHHHHTCC-------
T ss_pred -CCCCCCHHHHHHHHHHHHhccCcccchhh
Confidence 23469999999999988776655444333
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-46 Score=438.37 Aligned_cols=250 Identities=35% Similarity=0.550 Sum_probs=235.9
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchh
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 917 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~ 917 (1134)
.+.+.|+||||++++++.|++.+.+|++++++|.+.|.++++|+|||||||||||++|+|+|++++.+|+.++++++.++
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~ 254 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM 254 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSS
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCc---chhhHHHhHhhhcccccccccEEEEEecCCCCccc
Q 001162 918 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLD 994 (1134)
Q Consensus 918 ~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~---~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld 994 (1134)
|+|++++.++.+|..|+..+||||||||+|+++++|.....+ ...+++++||++||++...++|+||||||+|+.||
T Consensus 255 ~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD 334 (434)
T 4b4t_M 255 YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLD 334 (434)
T ss_dssp CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcC
Confidence 999999999999999999999999999999999998654432 34577899999999999999999999999999999
Q ss_pred hhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 001162 995 AALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNE 1074 (1134)
Q Consensus 995 ~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~ 1074 (1134)
||++||||||+.|+||+|+.++|.+||+.+++++++..++|++.||+.|+||||+||+++|++|++.|+++
T Consensus 335 ~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~--------- 405 (434)
T 4b4t_M 335 PALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRN--------- 405 (434)
T ss_dssp TTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHH---------
T ss_pred HhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCcccccHHHHHHHHhhcCCCCc
Q 001162 1075 PGKMPVITDALLKSIASKARPSVS 1098 (1134)
Q Consensus 1075 ~~~~~~it~e~l~~al~~~~ps~~ 1098 (1134)
+...|+.+||..|+++++|+.+
T Consensus 406 --~~~~i~~~Df~~Al~~v~~~~~ 427 (434)
T 4b4t_M 406 --GQSSVKHEDFVEGISEVQARKS 427 (434)
T ss_dssp --TCSSBCHHHHHHHHHSCSSSCC
T ss_pred --CCCCcCHHHHHHHHHHHhCCCC
Confidence 2346999999999999999765
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-46 Score=434.63 Aligned_cols=246 Identities=33% Similarity=0.574 Sum_probs=232.0
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchh
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 917 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~ 917 (1134)
.+.+.|+||||++++++.|++.+.+|+.++++|...|+++++|+|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk 282 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQK 282 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCc---chhhHHHhHhhhcccccccccEEEEEecCCCCccc
Q 001162 918 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLD 994 (1134)
Q Consensus 918 ~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~---~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld 994 (1134)
|+|++++.++.+|..|+..+||||||||+|+++++|+.+..+ ...++++++|.+||+.....+|+||+|||+|+.||
T Consensus 283 ~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LD 362 (467)
T 4b4t_H 283 YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLD 362 (467)
T ss_dssp SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBC
T ss_pred cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCC
Confidence 999999999999999999999999999999999998765433 34567899999999999999999999999999999
Q ss_pred hhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 001162 995 AALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNE 1074 (1134)
Q Consensus 995 ~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~ 1074 (1134)
||++||||||+.|+|++|+.++|.+||+.+++++++..++|++.||+.|+||||+||+++|++|++.|+++
T Consensus 363 pALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~--------- 433 (467)
T 4b4t_H 363 PALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA--------- 433 (467)
T ss_dssp HHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH---------
T ss_pred hhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCcccccHHHHHHHHhhcC
Q 001162 1075 PGKMPVITDALLKSIASKAR 1094 (1134)
Q Consensus 1075 ~~~~~~it~e~l~~al~~~~ 1094 (1134)
++..||.+||..|++++.
T Consensus 434 --~~~~it~~Df~~Al~kV~ 451 (467)
T 4b4t_H 434 --RRKVATEKDFLKAVDKVI 451 (467)
T ss_dssp --TCSSBCHHHHHHHHHHHH
T ss_pred --CCCccCHHHHHHHHHHHh
Confidence 234699999999998763
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-45 Score=427.90 Aligned_cols=251 Identities=37% Similarity=0.576 Sum_probs=234.3
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchh
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 917 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~ 917 (1134)
.+.+.|+||||++++++.|.+.+.+|++++++|...|.++++|+|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~ 245 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK 245 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCC---CcchhhHHHhHhhhcccccccccEEEEEecCCCCccc
Q 001162 918 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLD 994 (1134)
Q Consensus 918 ~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~---~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld 994 (1134)
|+|+++..++.+|..|+..+||||||||+|+++++|+... .....+++++||++|||+....+|+||||||+|+.||
T Consensus 246 ~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD 325 (428)
T 4b4t_K 246 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLD 325 (428)
T ss_dssp SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCC
T ss_pred ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcC
Confidence 9999999999999999999999999999999999985433 3445789999999999999999999999999999999
Q ss_pred hhhcCcCcccceeecC-CCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCC
Q 001162 995 AALLRPGRLDRLLFCD-FPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN 1073 (1134)
Q Consensus 995 ~allrpgRfd~~i~~~-~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~ 1073 (1134)
||++||||||+.|+|| +|+.++|..||+.+++++++..++|++.||..|+||||+||+++|++|++.|+++
T Consensus 326 ~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~-------- 397 (428)
T 4b4t_K 326 PALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK-------- 397 (428)
T ss_dssp HHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT--------
T ss_pred hhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC--------
Confidence 9999999999999996 8999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCcccccHHHHHHHHhh-cCCCCcH
Q 001162 1074 EPGKMPVITDALLKSIASK-ARPSVSE 1099 (1134)
Q Consensus 1074 ~~~~~~~it~e~l~~al~~-~~ps~~~ 1099 (1134)
++..|+.+||..|+.. .+++.+.
T Consensus 398 ---~~~~i~~~d~~~A~~~~~~~~~~~ 421 (428)
T 4b4t_K 398 ---NRYVILQSDLEEAYATQVKTDNTV 421 (428)
T ss_dssp ---TCSSBCHHHHHHHHHHHSCSCCCS
T ss_pred ---CCCCCCHHHHHHHHHHhhCccCCc
Confidence 2357999999999975 5665543
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.3e-40 Score=414.17 Aligned_cols=258 Identities=40% Similarity=0.650 Sum_probs=241.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcc
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~ 919 (1134)
.+.|+||+|++++++.|++.+.+|++++++|...+..+++|+|||||||||||++|+++|++++.+|+.++++++.++|.
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCT
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcC
Q 001162 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLR 999 (1134)
Q Consensus 920 G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allr 999 (1134)
|+++..++.+|+.|+..+||||||||+|+|+++|+........+++++|+++||++....+|+||+|||+|+.||++++|
T Consensus 280 gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR 359 (806)
T 3cf2_A 280 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRR 359 (806)
T ss_dssp THHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTS
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhC
Confidence 99999999999999999999999999999999998888888899999999999999988999999999999999999999
Q ss_pred cCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCC---
Q 001162 1000 PGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPG--- 1076 (1134)
Q Consensus 1000 pgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~--- 1076 (1134)
|||||+.|+++.|+.++|.+||+.+++++++..++|+..||..|+||+|+||.++|++|++.|+++...........
T Consensus 360 ~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~ 439 (806)
T 3cf2_A 360 FGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDA 439 (806)
T ss_dssp TTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSH
T ss_pred CcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999877543322111
Q ss_pred ---CcccccHHHHHHHHhhcCCCC
Q 001162 1077 ---KMPVITDALLKSIASKARPSV 1097 (1134)
Q Consensus 1077 ---~~~~it~e~l~~al~~~~ps~ 1097 (1134)
....++.+||..|+...+|+.
T Consensus 440 e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 440 EVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp HHHHHCEECTTHHHHHHSSSSCCC
T ss_pred hhhccceeeHHHHHHHHHhCCCcc
Confidence 234689999999999988754
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.8e-39 Score=366.53 Aligned_cols=273 Identities=29% Similarity=0.560 Sum_probs=246.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc-CCcEEEEeCcccchh
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-SLRFISVKGPELLNK 917 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~-~~~~i~i~~~el~~~ 917 (1134)
+.+.|++|+|++++++.|.+.+.+|++++++|.. ...+++++|||||||||||++|+++|+++ +.+|+.++++++.++
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~ 85 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 85 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh
Confidence 4589999999999999999999999999999874 35677899999999999999999999999 899999999999999
Q ss_pred cccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc-ccccEEEEEecCCCCccchh
Q 001162 918 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-VLTGVFVFAATSRPDLLDAA 996 (1134)
Q Consensus 918 ~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~-~~~~v~vIatTn~p~~ld~a 996 (1134)
|.|+++..++.+|..|+..+|+||||||+|+++++++........+++++++.+|+++. ...+++||+|||+|+.+|++
T Consensus 86 ~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~a 165 (322)
T 1xwi_A 86 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSA 165 (322)
T ss_dssp SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHH
Confidence 99999999999999999999999999999999999887777778899999999999876 36789999999999999999
Q ss_pred hcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCC---
Q 001162 997 LLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDS--- 1072 (1134)
Q Consensus 997 llrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~--- 1072 (1134)
++| ||+..+++++|+.++|.+||+.++++.+.. .+.+++.|++.++||+|+||.++|++|++.|+++.......
T Consensus 166 l~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~~ 243 (322)
T 1xwi_A 166 IRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKV 243 (322)
T ss_dssp HHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEE
T ss_pred HHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 999 999999999999999999999999887654 67889999999999999999999999999999997643100
Q ss_pred ---C--------------------------------CCCCcccccHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhc
Q 001162 1073 ---N--------------------------------EPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLD 1114 (1134)
Q Consensus 1073 ---~--------------------------------~~~~~~~it~e~l~~al~~~~ps~~~~~~~~~~~~~~~f~~ 1114 (1134)
. +....+.||.+||..|++.++||++.+++.+|++|+.+|..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~ 320 (322)
T 1xwi_A 244 RGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQ 320 (322)
T ss_dssp EEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTTCS
T ss_pred ccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcc
Confidence 0 00012579999999999999999999999999999999964
No 11
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=9.8e-39 Score=361.52 Aligned_cols=274 Identities=44% Similarity=0.763 Sum_probs=248.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
+.+.|++|+|++++++.|.+.+.+++.+++.|...+..++.++||+||||||||++|+++|++++.+|+.++++++.++|
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 89 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhh
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCC---CCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccch
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH---DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~---~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~ 995 (1134)
.|+++..++.+|..|+...|+||||||+|.+.+.++. +..+...+++++++..|+++....+++||+|||+++.+|+
T Consensus 90 ~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~ 169 (301)
T 3cf0_A 90 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDP 169 (301)
T ss_dssp HTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCG
T ss_pred cCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccCh
Confidence 9999999999999999999999999999999876643 2345667899999999998887788999999999999999
Q ss_pred hhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCC--
Q 001162 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN-- 1073 (1134)
Q Consensus 996 allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~-- 1073 (1134)
+++|+|||+..++|++|+.++|.+|++.++++.++..+++++.++..++||+|+||+++|++|++.|+.+.+......
T Consensus 170 al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~ 249 (301)
T 3cf0_A 170 AILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRER 249 (301)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999999998888889999999999999999999999999999998876321100
Q ss_pred ------------CCCCcccccHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh
Q 001162 1074 ------------EPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQF 1112 (1134)
Q Consensus 1074 ------------~~~~~~~it~e~l~~al~~~~ps~~~~~~~~~~~~~~~f 1112 (1134)
.....+.|+.+||..|++.++||++.+++.+|+.|..+|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~ 300 (301)
T 3cf0_A 250 ERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 300 (301)
T ss_dssp ----------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH
T ss_pred hcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 011235799999999999999999999999999999988
No 12
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.7e-38 Score=354.18 Aligned_cols=264 Identities=44% Similarity=0.767 Sum_probs=219.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
+.+.|+||+|++++++.|.+.+.+|+.+++.+...++.++.|++|+||||||||++++++|.+++..++.+++.++.++|
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhc
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALL 998 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~all 998 (1134)
.|+++..++.+|+.|+...|+++|+||+|.+++.|+....+...+++++++.+|++......++++++||+|+.+|++++
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~ 164 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAIL 164 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhc
Confidence 99999999999999988899999999999998776544444456889999999999988889999999999999999999
Q ss_pred CcCcccceeecCCCCHHHHHHHHHHHHcc---CCCCCcccHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHHhccCCC
Q 001162 999 RPGRLDRLLFCDFPSPRERLDILKVISRK---LPLADDVDLEAIAHMT--EGFSGADLQALLSDAQLSAVHEILNNIDSN 1073 (1134)
Q Consensus 999 rpgRfd~~i~~~~p~~~er~~Il~~~~~~---~~~~~~vd~~~La~~t--~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~ 1073 (1134)
||||||+.|++++|+.++|.+||+.+++. .++..+++++.+|..+ +||||+||.++|++|++.|+++........
T Consensus 165 r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~ 244 (274)
T 2x8a_A 165 RPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSG 244 (274)
T ss_dssp STTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC------
T ss_pred CcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999998854 3556789999999874 599999999999999999998865433222
Q ss_pred CCCCcccccHHHHHHHHhhcCCCCcHHHH
Q 001162 1074 EPGKMPVITDALLKSIASKARPSVSEAEK 1102 (1134)
Q Consensus 1074 ~~~~~~~it~e~l~~al~~~~ps~~~~~~ 1102 (1134)
.......|+.+||..|++.++||++.+++
T Consensus 245 ~~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 245 NEKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp -----CCBCHHHHHHHHTTCCCCC-----
T ss_pred ccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 22334579999999999999999988764
No 13
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.3e-37 Score=355.74 Aligned_cols=275 Identities=30% Similarity=0.550 Sum_probs=242.9
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchh
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 917 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~ 917 (1134)
.+.+.|++|+|++++++.|.+.+.+|..++++|.. +..++.++|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 90 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 90 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc
Confidence 34689999999999999999999999999988876 45677899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc-ccccEEEEEecCCCCccchh
Q 001162 918 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-VLTGVFVFAATSRPDLLDAA 996 (1134)
Q Consensus 918 ~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~-~~~~v~vIatTn~p~~ld~a 996 (1134)
|.|+++..++.+|..|+...|+||||||+|.+.++++........++.++++..|+++. ...+++||+|||+|+.+|++
T Consensus 91 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~a 170 (322)
T 3eie_A 91 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSA 170 (322)
T ss_dssp TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHH
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHH
Confidence 99999999999999999999999999999999998877777788999999999999885 56689999999999999999
Q ss_pred hcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCC---
Q 001162 997 LLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDS--- 1072 (1134)
Q Consensus 997 llrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~--- 1072 (1134)
++| ||+..++|++|+.++|.+||+.++++.+.. .+.+++.|+..++||+|+||.++|++|++.|+++.......
T Consensus 171 l~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~ 248 (322)
T 3eie_A 171 IRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDV 248 (322)
T ss_dssp HHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEEC
T ss_pred HHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 999 999999999999999999999999887754 67889999999999999999999999999999998654210
Q ss_pred -----------------------------CCCCCcccccHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhcc
Q 001162 1073 -----------------------------NEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDS 1115 (1134)
Q Consensus 1073 -----------------------------~~~~~~~~it~e~l~~al~~~~ps~~~~~~~~~~~~~~~f~~~ 1115 (1134)
.+....+.||.+||..|++.++||++.+++.+|++|+.+|...
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~ 320 (322)
T 3eie_A 249 STEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 320 (322)
T ss_dssp C----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC--
T ss_pred ccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC
Confidence 0011225799999999999999999999999999999999653
No 14
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=3.7e-37 Score=356.38 Aligned_cols=273 Identities=30% Similarity=0.555 Sum_probs=236.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
+...|++|+|++++++.|.+.+.+++.++++|.. +..++.++|||||||||||++|+++|++++.+|+.++++++.++|
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~ 124 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 124 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhh
Confidence 4588999999999999999999999999998886 456778999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccc-cccEEEEEecCCCCccchhh
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV-LTGVFVFAATSRPDLLDAAL 997 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~-~~~v~vIatTn~p~~ld~al 997 (1134)
.|.++..++.+|..|+...|+||||||+|.+.+.|+........++.++|+..|+++.. ..+++||+|||+|+.+|+++
T Consensus 125 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al 204 (355)
T 2qp9_X 125 MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAI 204 (355)
T ss_dssp ---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHH
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHH
Confidence 99999999999999999999999999999999988777777788999999999998754 56899999999999999999
Q ss_pred cCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCC----
Q 001162 998 LRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDS---- 1072 (1134)
Q Consensus 998 lrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~---- 1072 (1134)
+| ||+..+++++|+.++|.+||+.++++.+.. .+.+++.|++.++||+|+||.++|++|++.|+++.......
T Consensus 205 ~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 282 (355)
T 2qp9_X 205 RR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVS 282 (355)
T ss_dssp HH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEECC
T ss_pred Hc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 99 999999999999999999999999887653 67889999999999999999999999999999986543100
Q ss_pred ----------------------------CCCCCcccccHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhc
Q 001162 1073 ----------------------------NEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLD 1114 (1134)
Q Consensus 1073 ----------------------------~~~~~~~~it~e~l~~al~~~~ps~~~~~~~~~~~~~~~f~~ 1114 (1134)
......+.||.+||..|++.++||++.+++.+|++|..+|..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~~ 352 (355)
T 2qp9_X 283 TEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 352 (355)
T ss_dssp C-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC-
T ss_pred cccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 000123579999999999999999999999999999999964
No 15
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=2.2e-36 Score=359.91 Aligned_cols=273 Identities=28% Similarity=0.549 Sum_probs=236.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc-CCcEEEEeCcccchh
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-SLRFISVKGPELLNK 917 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~-~~~~i~i~~~el~~~ 917 (1134)
+...|++|+|++++++.|.+.+.+|+.++++|.. +..++.++||+||||||||++|+++|+++ +.+|+.++++++.++
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence 4589999999999999999999999988888774 34567899999999999999999999999 899999999999999
Q ss_pred cccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc-ccccEEEEEecCCCCccchh
Q 001162 918 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-VLTGVFVFAATSRPDLLDAA 996 (1134)
Q Consensus 918 ~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~-~~~~v~vIatTn~p~~ld~a 996 (1134)
|.|.++..++.+|..|+...|+||||||+|.+++.++........+++++|+..|+++. ...+++||+|||+|+.+|++
T Consensus 208 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~a 287 (444)
T 2zan_A 208 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSA 287 (444)
T ss_dssp ----CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHH
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHH
Confidence 99999999999999999999999999999999998887777778899999999999876 35789999999999999999
Q ss_pred hcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccC----
Q 001162 997 LLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNID---- 1071 (1134)
Q Consensus 997 llrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~---- 1071 (1134)
++| ||+..+++++|+.++|..||+.++++.+.. .+.+++.|+..++||+|+||.++|++|++.|+++......
T Consensus 288 l~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~~~ 365 (444)
T 2zan_A 288 IRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKV 365 (444)
T ss_dssp HHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEE
T ss_pred HHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 999 999999999999999999999999887653 6788999999999999999999999999999999764310
Q ss_pred --------------------C--------------CCCCCcccccHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhc
Q 001162 1072 --------------------S--------------NEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLD 1114 (1134)
Q Consensus 1072 --------------------~--------------~~~~~~~~it~e~l~~al~~~~ps~~~~~~~~~~~~~~~f~~ 1114 (1134)
. .+....+.||.+||..|++.++||++.+++.+|++|..+|..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~~~~~ 442 (444)
T 2zan_A 366 RGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQ 442 (444)
T ss_dssp CCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTSSCTT
T ss_pred ccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcC
Confidence 0 000123579999999999999999999999999999998854
No 16
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-35 Score=340.39 Aligned_cols=249 Identities=22% Similarity=0.345 Sum_probs=215.5
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
..++++++|++.+++++.+.+...+. .+++|..+|+++|+|+|||||||||||++|+++|.+++ .+++.+++
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~--~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~------~~f~~v~~ 215 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVK--HPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD------CKFIRVSG 215 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHH--CHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT------CEEEEEEG
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHh--CHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC------CCceEEEh
Confidence 45689999999999999998865332 57899999999999999999999999999999999998 89999999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
+.+...+.|+..+.++.+|..|..++||||||||+|.+++.+....+. .......+...|+..||.+... .+
T Consensus 216 s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~-~~~~~~~~l~~lL~~lDg~~~~-------~~ 287 (405)
T 4b4t_J 216 AELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGG-GDSEVQRTMLELLNQLDGFETS-------KN 287 (405)
T ss_dssp GGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSG-GGGHHHHHHHHHHHHHHTTTCC-------CC
T ss_pred HHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCC-CcHHHHHHHHHHHHhhhccCCC-------CC
Confidence 999999999999999999999999999999999999999766544333 2334456777888888877543 25
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
|+||+|||+++.||++|+|+|||+.+|+|+.|+.++|.+||+.++.+..+. .+.++..+|..|+||+|+||+.+|++|.
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G~SGADi~~l~~eA~ 366 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNGCSGADVKGVCTEAG 366 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988765443 2335899999999999999999999999
Q ss_pred HHHhcccccCCCccccccccccchhhhHhhhhccccc
Q 001162 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1134)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~ 826 (1134)
..|+.+ ....++.+||..|+..+.+.
T Consensus 367 ~~Air~-----------~~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 367 MYALRE-----------RRIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp HHHHHT-----------TCSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHc-----------CCCCcCHHHHHHHHHHHhCc
Confidence 988765 23568999999999877654
No 17
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-35 Score=335.58 Aligned_cols=250 Identities=20% Similarity=0.306 Sum_probs=215.3
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
..+|++++|++.++++|.+.+...+. .+++|..+|+++|+|+|||||||||||++|+++|.+++ .+++.+++
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~--~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~------~~fi~v~~ 249 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLT--HPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS------ATFLRIVG 249 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHH--CCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT------CEEEEEES
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHh--CHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC------CCEEEEEH
Confidence 56789999999999999998866332 56799999999999999999999999999999999998 89999999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
+.+...+.++..+.++.+|..|...+||||||||+|.+++.+....... .......+..|+..+|.+... .+
T Consensus 250 s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~-~~~~~~~l~~LL~~lDg~~~~-------~~ 321 (437)
T 4b4t_I 250 SELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGG-EREIQRTMLELLNQLDGFDDR-------GD 321 (437)
T ss_dssp GGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSS-CCHHHHHHHHHHHHHHHCCCS-------SS
T ss_pred HHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCc-cHHHHHHHHHHHHHhhCcCCC-------CC
Confidence 9999999999999999999999999999999999999998765544332 233445666777778876543 25
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
|+||+|||+++.||++|+|+|||+.+|+|+.|+.++|.+||+.++.+..+. .+.++..+|..|+||+|+||+.+|++|.
T Consensus 322 ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eA~ 400 (437)
T 4b4t_I 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-EDVNLETLVTTKDDLSGADIQAMCTEAG 400 (437)
T ss_dssp EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-SCCCHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998765443 2235889999999999999999999999
Q ss_pred HHHhcccccCCCccccccccccchhhhHhhhhccccce
Q 001162 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVA 827 (1134)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~ 827 (1134)
..|+.+ ....++.+||..|++.+.+..
T Consensus 401 ~~Air~-----------~~~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 401 LLALRE-----------RRMQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp HHHHHT-----------TCSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHc-----------CCCccCHHHHHHHHHHHhCCC
Confidence 988765 224689999999998876653
No 18
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=100.00 E-value=1.5e-35 Score=305.89 Aligned_cols=163 Identities=30% Similarity=0.539 Sum_probs=151.9
Q ss_pred CeeEEEEeCCcccceeeCCHHHHHHHhcccccCCCCceEEEEEEeCCCCeEEEEecCccC----CCCceEecHHHHhhcC
Q 001162 1 MELEVRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQRWVVAWSGATS----SSSFIEVARQFAECIS 76 (1134)
Q Consensus 1 m~~~v~~~~~~~~~~v~lp~~l~~~l~~~~~~~~~~q~~~~e~~~~~~~~~~~~w~g~~s----~~~~iei~~~~a~~~g 76 (1134)
|+++|+|++ .|+||||||+++++.|.. .|..+|||.++. +++|+||.|+.+ +.+.||||+.||+++|
T Consensus 13 ~~~~v~~~~-~~~~~vrL~~~~~~~L~~-------~~gd~VeI~g~~-~t~~~~w~~~~~~~d~~~~~I~Id~~~r~n~g 83 (179)
T 1wlf_A 13 AVVTVAFTN-ARDCFLHLPRRLVAQLHL-------LQNQAIEVASDH-QPTYLSWVEGRHFNDQSENVAEINRQVGQKLG 83 (179)
T ss_dssp EEEEEEEEC-CSSSCEEECHHHHHHTTC-------CTTCCEEEESSS-CCEEECEEECSSCC---CCEEEEEHHHHHHTT
T ss_pred EEEEEEEEC-CCCcEEECCHHHHHHcCC-------CCCcEEEEEeCC-eeEEEEEECCCCcccCCCCEEEECHHHHhHCC
Confidence 689999999 599999999999999983 578899999865 689999999876 2479999999999999
Q ss_pred CCCCCEEEEEEeeCCccceEEEEecCCcchHHHHHhcHHHHHHHHhcccceecCCCEEEEEecCceEEEEEEcccCCCCC
Q 001162 77 LADHTIVQVRVVSNVLKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKP 156 (1134)
Q Consensus 77 l~~~~~v~~~~~~~~~~~~~v~veP~t~dDwei~e~~a~~~e~~ll~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~ 156 (1134)
+.+|++|.|+.+.+++.|++|+|||+|+|||||+|+|++|||.+||+|+|+|++|++||+|+++++.++|+|+++.|+..
T Consensus 84 v~~Gd~V~V~~~~~~~~A~~V~laP~~~dD~ei~e~~a~~le~~Ll~QiR~v~~G~~i~v~~~g~~~i~f~V~~~~P~~~ 163 (179)
T 1wlf_A 84 LSSGDQVFLRPCSHVVSCQQVEVEPLSADDWEILELHAISLEQHLLDQIRIVFPKAVVPIWVDQQTYIFIQIVTLMPAAP 163 (179)
T ss_dssp CCTTCEEEEEECSCCEECSEEEEEESSHHHHHHHHHSCSSHHHHHHHHCCEECTTCEEEEESSSSCEEEEEEEEEESCCS
T ss_pred CCCCCEEEEEECCCCccceEEEEEcCCcCCeEEehhHHHHHHHHHhcCceeccCCCEEEEEecCCeEEEEEEEEeeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998999999999999778
Q ss_pred eEEccCCCEEEEeccC
Q 001162 157 VVQLVPGTEVAVAPKR 172 (1134)
Q Consensus 157 ~~~l~~~tev~vapk~ 172 (1134)
+++|+++|||+|+||+
T Consensus 164 ~v~It~~TeI~v~pk~ 179 (179)
T 1wlf_A 164 YGRLETNTKLLIQPKT 179 (179)
T ss_dssp SEECCTTCEEEECC--
T ss_pred eEEECCCcEEEEecCC
Confidence 9999999999999985
No 19
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-34 Score=338.13 Aligned_cols=253 Identities=20% Similarity=0.311 Sum_probs=216.7
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
..+|.+++|++.+++++.+.+...+. .+++|..+|+++|+|+|||||||||||++|+++|.+++ .+++.+++
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~--~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~------~~f~~v~~ 248 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMK--RADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN------ATFLKLAA 248 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHH--CSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEEG
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHh--CHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC------CCEEEEeh
Confidence 45689999999999999998765442 56799999999999999999999999999999999998 89999999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
+.+...+.+...+.++.+|..|..++||||||||+|.+++.+.+..... ..........|+..+|.+... .+
T Consensus 249 s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~-~~~~~~~~~~lL~~ldg~~~~-------~~ 320 (434)
T 4b4t_M 249 PQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSG-DREVQRTMLELLNQLDGFSSD-------DR 320 (434)
T ss_dssp GGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGT-THHHHHHHHHHHHHHTTSCSS-------CS
T ss_pred hhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCC-chHHHHHHHHHHHHhhccCCC-------CC
Confidence 9999999999999999999999999999999999999997765443332 233445667777888876543 25
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
|+||||||+++.||++|+|+|||+.+|+|+.|+.++|.+||+.++.+..+. .+..+..+|..|+||+|+||+.+|++|.
T Consensus 321 ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~sGADi~~l~~eA~ 399 (434)
T 4b4t_M 321 VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINWQELARSTDEFNGAQLKAVTVEAG 399 (434)
T ss_dssp SEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred EEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999988765432 2234889999999999999999999999
Q ss_pred HHHhcccccCCCccccccccccchhhhHhhhhccccceecc
Q 001162 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRD 830 (1134)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~lr~ 830 (1134)
..|+.+ ....++.+||..|+..+.|...+.
T Consensus 400 ~~a~r~-----------~~~~i~~~Df~~Al~~v~~~~~~~ 429 (434)
T 4b4t_M 400 MIALRN-----------GQSSVKHEDFVEGISEVQARKSKS 429 (434)
T ss_dssp HHHHHH-----------TCSSBCHHHHHHHHHSCSSSCCCC
T ss_pred HHHHHc-----------CCCCcCHHHHHHHHHHHhCCCCcC
Confidence 988765 224689999999999988765443
No 20
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-34 Score=334.00 Aligned_cols=249 Identities=20% Similarity=0.303 Sum_probs=214.9
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
..++++++|++.++++|.+.+...+. .+++|..+|+++|+|+|||||||||||++|+++|.+++ .+++.+++
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~--~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~------~~~~~v~~ 248 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLK--NPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG------ANFIFSPA 248 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHH--CHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEEG
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHh--CHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC------CCEEEEeh
Confidence 45689999999999999998866432 57899999999999999999999999999999999998 89999999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
+.+...+.+...+.++.+|..|..++||||||||+|.+++.+...... ...........|+..||.+... ++
T Consensus 249 s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~-~~~~~~~~l~~lL~~lDg~~~~-------~~ 320 (437)
T 4b4t_L 249 SGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS-ADREIQRTLMELLTQMDGFDNL-------GQ 320 (437)
T ss_dssp GGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCS-STTHHHHHHHHHHHHHHSSSCT-------TS
T ss_pred hhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCC-cchHHHHHHHHHHHHhhcccCC-------CC
Confidence 999999999999999999999999999999999999999766544332 2334456677788888876543 25
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
++||+|||+++.||++|+|+|||+.+|+|+.|+.++|.+||+.++.+.... .+.++..+|..|+||+|+||+.+|..|.
T Consensus 321 vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA~ 399 (437)
T 4b4t_L 321 TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEAG 399 (437)
T ss_dssp SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHHH
T ss_pred eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999998765432 3335889999999999999999999999
Q ss_pred HHHhcccccCCCccccccccccchhhhHhhhhccccc
Q 001162 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1134)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~ 826 (1134)
..|+.+ ....++.+||..|++.+.|.
T Consensus 400 ~~air~-----------~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 400 FFAIRD-----------DRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHHT-----------TCSSBCHHHHHHHHHHHHHT
T ss_pred HHHHHc-----------CCCCCCHHHHHHHHHHHHhc
Confidence 888765 22468999999999887664
No 21
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-34 Score=331.55 Aligned_cols=248 Identities=21% Similarity=0.267 Sum_probs=211.9
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
..+|.+++|++.++++|.+.+...+. .+++|..+|+++|+|+|||||||||||++|+++|.+++ .+++.+++
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~--~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~------~~fi~vs~ 276 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLL--SPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD------ATFIRVIG 276 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHH--CHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT------CEEEEEEG
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhc--CHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC------CCeEEEEh
Confidence 45688999999999999998765332 57899999999999999999999999999999999998 89999999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
+.+...+.+...+.++.+|..|..++||||||||+|.+++.+.+.... ...........++..||.+... .+
T Consensus 277 s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~-~~~~~~~~l~~lL~~lDg~~~~-------~~ 348 (467)
T 4b4t_H 277 SELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAG-GDNEVQRTMLELITQLDGFDPR-------GN 348 (467)
T ss_dssp GGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCG-GGGHHHHHHHHHHHHHHSSCCT-------TT
T ss_pred HHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCC-ccHHHHHHHHHHHHHhhccCCC-------Cc
Confidence 999999999999999999999999999999999999999766544332 2334445566677777765432 26
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
|+||+|||+++.||++|+|+|||+++|+|+.|+.++|.+||+.++.+..+. .+..+..+|..|+||+|+||+.+|++|.
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eAa 427 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAG 427 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988765443 2234789999999999999999999999
Q ss_pred HHHhcccccCCCccccccccccchhhhHhhhhcccc
Q 001162 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1134)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P 825 (1134)
..|+.+ ....++.+||..|++.+.+
T Consensus 428 ~~Air~-----------~~~~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 428 MFAIRA-----------RRKVATEKDFLKAVDKVIS 452 (467)
T ss_dssp HHHHHH-----------TCSSBCHHHHHHHHHHHHH
T ss_pred HHHHHc-----------CCCccCHHHHHHHHHHHhc
Confidence 988765 2246899999999987654
No 22
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-33 Score=328.06 Aligned_cols=247 Identities=20% Similarity=0.304 Sum_probs=213.6
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
..++.+++|++.++++|.+.+...+. .+++|..+|+++|+|+|||||||||||++|+++|.+++ .+++.+++
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~--~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~------~~~~~v~~ 239 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLV--QADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK------AAFIRVNG 239 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHH--CHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT------CEEEEEEG
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHh--CHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC------CCeEEEec
Confidence 45689999999999999998865442 57899999999999999999999999999999999998 89999999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
+.+.+.+.+...+.++.+|..|..++|||+||||+|.+++.+....... ......+...|+..||++.... +
T Consensus 240 ~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~-~~~~~r~l~~lL~~ldg~~~~~-------~ 311 (428)
T 4b4t_K 240 SEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGS-DREVQRILIELLTQMDGFDQST-------N 311 (428)
T ss_dssp GGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCC-CCHHHHHHHHHHHHHHHSCSSC-------S
T ss_pred chhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCC-ChHHHHHHHHHHHHhhCCCCCC-------C
Confidence 9999999999999999999999999999999999999998765444332 2344567778888899876432 5
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCC-CCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLP-APAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~-~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a 788 (1134)
|+||+|||+++.||++|+|+|||+.+|+|| +|+.++|.+||+.++.+..+. ++..+..+|..|+||+|+||+.+|++|
T Consensus 312 v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G~sgadi~~l~~eA 390 (428)
T 4b4t_K 312 VKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEA 390 (428)
T ss_dssp EEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred EEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999997 899999999999998765432 233589999999999999999999999
Q ss_pred HHHHhcccccCCCccccccccccchhhhHhhhhccc
Q 001162 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (1134)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~ 824 (1134)
...|+.+ ....++.+||..|+....
T Consensus 391 ~~~a~r~-----------~~~~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 391 GLRAVRK-----------NRYVILQSDLEEAYATQV 415 (428)
T ss_dssp HHHHHHT-----------TCSSBCHHHHHHHHHHHS
T ss_pred HHHHHHC-----------CCCCCCHHHHHHHHHHhh
Confidence 9988865 225689999999987643
No 23
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=1.3e-32 Score=349.56 Aligned_cols=455 Identities=15% Similarity=0.194 Sum_probs=310.1
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc----eeeEEEEE
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFV 627 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~----~~~~~~~v 627 (1134)
.+..++|.+..+..+++.+. ...+.++||+||||||||++++++++.+..... ....++.+
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~---------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLC---------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHT---------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred CCCCccCCHHHHHHHHHHHh---------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 46678899988888776542 123467999999999999999999998743211 12556777
Q ss_pred eccccc--ccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccccc
Q 001162 628 CCSRLS--LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC 705 (1134)
Q Consensus 628 ~~s~l~--~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~ 705 (1134)
++..+. ..+.+...+.+..+|..+....++||||||+|.+.+......+ .....+.|...+ .
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~------~~~~~~~L~~~l----~------ 312 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG------QVDAANLIKPLL----S------ 312 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSC------HHHHHHHHSSCS----S------
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcc------hHHHHHHHHHHH----h------
Confidence 777665 3456778888999999988778899999999999854322111 112233332221 1
Q ss_pred CCCcEEEEEecCCCC-----CCChhhccCCCccccccCCCCCHHHHHHHHHHHhhh----cccCCCHHHHHHHhhhcCC-
Q 001162 706 GIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDG- 775 (1134)
Q Consensus 706 ~~~~V~vIattn~~~-----~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~----~~l~~~~~~l~~la~~teG- 775 (1134)
.+.+.+|++|+.++ .++++|.+ ||. .+.|+.|+.+++.+|++.++.. +++.++++.+..++..+.|
T Consensus 313 -~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~ 388 (758)
T 1r6b_X 313 -SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKY 388 (758)
T ss_dssp -SCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred -CCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh
Confidence 12478888888643 46788998 998 7999999999999999987654 4567888888888877655
Q ss_pred ----CChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhccccceecccccccc----CCCCCCCCCCC
Q 001162 776 ----YDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSA----EGGRSGWDDVG 847 (1134)
Q Consensus 776 ----~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~----~~~~~~~~~i~ 847 (1134)
+.+..+..++++|+..+.... . ......++.+|+..++..++............ .....-..++.
T Consensus 389 i~~~~lp~~~i~lld~a~~~~~~~~--~-----~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~ 461 (758)
T 1r6b_X 389 INDRHLPDKAIDVIDEAGARARLMP--V-----SKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVF 461 (758)
T ss_dssp CTTSCTTHHHHHHHHHHHHHHHHSS--S-----CCCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSC
T ss_pred cccccCchHHHHHHHHHHHHHhccc--c-----cccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhhcc
Confidence 456678888888875443211 0 11234588899988887664321111100000 00001124578
Q ss_pred ChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchh----------
Q 001162 848 GLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK---------- 917 (1134)
Q Consensus 848 gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~---------- 917 (1134)
|++++++.+...+..... .-..+.++..++||+||||||||++|+++|+.++.+|+.++++++..+
T Consensus 462 g~~~~~~~l~~~i~~~~~----g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~ 537 (758)
T 1r6b_X 462 GQDKAIEALTEAIKMARA----GLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP 537 (758)
T ss_dssp SCHHHHHHHHHHHHHHHT----TCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCC
T ss_pred CHHHHHHHHHHHHHHHhc----ccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCC
Confidence 888888888776653100 000112344579999999999999999999999999999999988653
Q ss_pred --cccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc---------ccccEEEEEe
Q 001162 918 --YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---------VLTGVFVFAA 986 (1134)
Q Consensus 918 --~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~---------~~~~v~vIat 986 (1134)
|+|..+. ..+....+...++||||||||.+ ...+++.|++.|+.-. ...+++||+|
T Consensus 538 ~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~t 604 (758)
T 1r6b_X 538 PGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_dssp SCSHHHHHT--THHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEE
T ss_pred CCCcCcccc--chHHHHHHhCCCcEEEEeCcccc-----------CHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEe
Confidence 4443322 22344445566789999999987 4568899999887422 1246889999
Q ss_pred cCCCC-------------------------ccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccC-------CCC---
Q 001162 987 TSRPD-------------------------LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL-------PLA--- 1031 (1134)
Q Consensus 987 Tn~p~-------------------------~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~-------~~~--- 1031 (1134)
||.+. .++|+|++ ||+.++.|++|+.+++..|++.++++. ++.
T Consensus 605 sN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 682 (758)
T 1r6b_X 605 TNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEV 682 (758)
T ss_dssp ECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred cCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEe
Confidence 99854 57888988 999999999999999999999877632 111
Q ss_pred CcccHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHH
Q 001162 1032 DDVDLEAIAHMT--EGFSGADLQALLSDAQLSAVHEIL 1067 (1134)
Q Consensus 1032 ~~vd~~~La~~t--~g~sg~dl~~l~~~A~~~a~~~~~ 1067 (1134)
++..++.|+... .++..++++.+++.+...++.+.+
T Consensus 683 ~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~ 720 (758)
T 1r6b_X 683 SQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_dssp CHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHH
T ss_pred CHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHH
Confidence 222345555533 346688999999988887665543
No 24
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=3.8e-33 Score=314.76 Aligned_cols=275 Identities=31% Similarity=0.517 Sum_probs=229.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
+...|++++|++.+++.+.+.+.++..+++++...+ .++.++||+||||||||++|+++|++++.+|+.++++++.+.|
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 94 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKY 94 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcc
Confidence 457899999999999999999998888888776544 4567999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccccc---ccEEEEEecCCCCccch
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVL---TGVFVFAATSRPDLLDA 995 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~---~~v~vIatTn~p~~ld~ 995 (1134)
.|..+..++.+|..+....|+||||||+|.+...+.........++.++++..|++.... .+++||++||+|+.+|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~ 174 (297)
T 3b9p_A 95 VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDE 174 (297)
T ss_dssp CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCH
T ss_pred cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCH
Confidence 999999999999999999999999999999998876655666788899999999876543 57999999999999999
Q ss_pred hhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCC-C
Q 001162 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDS-N 1073 (1134)
Q Consensus 996 allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~-~ 1073 (1134)
+++| ||+..+++++|+.++|..|++.++++.+.. .+.+++.+++.+.||+|+||.++|+.|++.|+++....... .
T Consensus 175 ~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~ 252 (297)
T 3b9p_A 175 AALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCL 252 (297)
T ss_dssp HHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-------
T ss_pred HHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 9999 999999999999999999999998876543 45678899999999999999999999999998764322111 1
Q ss_pred CCCCcccccHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhccc
Q 001162 1074 EPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLDSK 1116 (1134)
Q Consensus 1074 ~~~~~~~it~e~l~~al~~~~ps~~~~~~~~~~~~~~~f~~~r 1116 (1134)
.......||.+||..|+..++||++.+++.+|++|...|.+.|
T Consensus 253 ~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~~ 295 (297)
T 3b9p_A 253 DISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGDIT 295 (297)
T ss_dssp -CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC-------
T ss_pred cccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCee
Confidence 1223467999999999999999999999999999999986543
No 25
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=1.3e-32 Score=326.63 Aligned_cols=245 Identities=38% Similarity=0.669 Sum_probs=219.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
+...|++|+|++++++.+.+.+.. +..+..+.+.+.+.+.++||+||||||||++|+++|.+++.+|+.++++++...|
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 357899999999999999998875 5677888889999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCC---CCcchhhHHHhHhhhcccccccccEEEEEecCCCCccch
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD---NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~---~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~ 995 (1134)
.|..+..++.+|..|+...||||||||+|.+.++|+.+ ......+++++|+.+|+++....+++||+|||+|+.+|+
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~ 169 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDP 169 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCG
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhch
Confidence 99999999999999999999999999999999887643 223345789999999998877789999999999999999
Q ss_pred hhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 001162 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEP 1075 (1134)
Q Consensus 996 allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 1075 (1134)
+++|||||++.+.|++|+.++|.+|++.++++.++..++++..++..+.||+|+||.++|++|++.|.++
T Consensus 170 allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~---------- 239 (476)
T 2ce7_A 170 ALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE---------- 239 (476)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT----------
T ss_pred hhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHc----------
Confidence 9999999999999999999999999999999988888999999999999999999999999999888643
Q ss_pred CCcccccHHHHHHHHhhcCC
Q 001162 1076 GKMPVITDALLKSIASKARP 1095 (1134)
Q Consensus 1076 ~~~~~it~e~l~~al~~~~p 1095 (1134)
+...|+.+||..|+..+.+
T Consensus 240 -~~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 240 -GRDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp -TCSSBCHHHHHHHHHHHC-
T ss_pred -CCCeecHHHHHHHHHHHhc
Confidence 2357999999999987643
No 26
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.2e-32 Score=308.50 Aligned_cols=265 Identities=40% Similarity=0.650 Sum_probs=224.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
+...|++++|++++++.|.+.+..++.+++.+...+..++.++||+||||||||++|+++|+.++.+++.++++++.+.|
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 91 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKF 91 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcc---hhhHHHhHhhhcccccccccEEEEEecCCCCccch
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGV---TDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~---~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~ 995 (1134)
.|..+..++.+|..++...|+||||||+|.+.+++.....+. ..+.+..++..+++.....+++||+|||.++.+|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~ 171 (285)
T 3h4m_A 92 IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDP 171 (285)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCH
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCH
Confidence 999999999999999999999999999999998876543332 34667777788877777788999999999999999
Q ss_pred hhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 001162 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEP 1075 (1134)
Q Consensus 996 allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 1075 (1134)
+++|++||+..+.|++|+.++|.+|++.+++...+..++++..++..+.|++++||+++|+.|...|+.+
T Consensus 172 ~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~---------- 241 (285)
T 3h4m_A 172 AILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE---------- 241 (285)
T ss_dssp HHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHT----------
T ss_pred HHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh----------
Confidence 9999999999999999999999999999999988888899999999999999999999999999988765
Q ss_pred CCcccccHHHHHHHHhhcCC--CCcHHHHHHHHHHHHHhhc
Q 001162 1076 GKMPVITDALLKSIASKARP--SVSEAEKLRLYSIYGQFLD 1114 (1134)
Q Consensus 1076 ~~~~~it~e~l~~al~~~~p--s~~~~~~~~~~~~~~~f~~ 1114 (1134)
....|+.+|+..|+..+.+ ......-.++..||+.|..
T Consensus 242 -~~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (285)
T 3h4m_A 242 -LRDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHH 281 (285)
T ss_dssp -TCSSBCHHHHHHHHHHHHHHHCCC----------------
T ss_pred -ccCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhcc
Confidence 2346999999999986532 1223445568889988854
No 27
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=3.5e-33 Score=334.32 Aligned_cols=257 Identities=40% Similarity=0.652 Sum_probs=236.2
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhccc
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIG 920 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~G 920 (1134)
..|++|+|++..++.|.+.+.+++.++++|...+..++.++||+||||||||++|+++|++++.+|+.++++++.+.|.|
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g 280 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTT
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCc
Q 001162 921 ASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRP 1000 (1134)
Q Consensus 921 ~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrp 1000 (1134)
+++..++.+|..|....|+||||||||.+.++++........+++++|+..|++.....+++||+|||+++.+|++++|+
T Consensus 281 ~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~ 360 (489)
T 3hu3_A 281 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 360 (489)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGST
T ss_pred hhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCC
Confidence 99999999999999999999999999999998877777778899999999999888888999999999999999999999
Q ss_pred CcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCC----
Q 001162 1001 GRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPG---- 1076 (1134)
Q Consensus 1001 gRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~---- 1076 (1134)
|||+..++|++|+.++|.+||+.+++.+++..++++..++..+.||+|+||.++|++|++.|+++.....+.....
T Consensus 361 gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~ 440 (489)
T 3hu3_A 361 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAE 440 (489)
T ss_dssp TSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHH
T ss_pred CcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchh
Confidence 9999999999999999999999999999988899999999999999999999999999999998865433222111
Q ss_pred --CcccccHHHHHHHHhhcCCCC
Q 001162 1077 --KMPVITDALLKSIASKARPSV 1097 (1134)
Q Consensus 1077 --~~~~it~e~l~~al~~~~ps~ 1097 (1134)
....||.+||..|++.++|+.
T Consensus 441 ~~~~~~vt~edf~~Al~~~~ps~ 463 (489)
T 3hu3_A 441 VMNSLAVTMDDFRWALSQSNPSA 463 (489)
T ss_dssp HHHHCCBCHHHHHHHHTSHHHHH
T ss_pred hcccCcCCHHHHHHHHHhCCchh
Confidence 123699999999999888853
No 28
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.2e-33 Score=322.05 Aligned_cols=273 Identities=29% Similarity=0.476 Sum_probs=232.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
+...|++++|++.+++.|.+.+.+++.++++|...+ .++.++||+||||||||++|+++|++++.+|+.++++++.+.|
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKW 157 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccc
Confidence 357899999999999999999998888887776543 5677999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccc--cccEEEEEecCCCCccchh
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV--LTGVFVFAATSRPDLLDAA 996 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~--~~~v~vIatTn~p~~ld~a 996 (1134)
.|..+..++.+|..|+...|+||||||+|.+.+.++.+......+++++++..|++... ..+++||+|||+++.+|++
T Consensus 158 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~ 237 (357)
T 3d8b_A 158 VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEA 237 (357)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHH
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHH
Confidence 99999999999999999999999999999999887766666778999999999997653 4679999999999999999
Q ss_pred hcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCC-CC
Q 001162 997 LLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDS-NE 1074 (1134)
Q Consensus 997 llrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~-~~ 1074 (1134)
++| ||+..+++++|+.++|.+|++.+++..+.. .+.+++.++..++||+|+||..+|+.|++.++++....... ..
T Consensus 238 l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~ 315 (357)
T 3d8b_A 238 ARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATIT 315 (357)
T ss_dssp HHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-------
T ss_pred HHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 999 999999999999999999999998876543 45678999999999999999999999999998864321111 11
Q ss_pred CCCcccccHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhc
Q 001162 1075 PGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLD 1114 (1134)
Q Consensus 1075 ~~~~~~it~e~l~~al~~~~ps~~~~~~~~~~~~~~~f~~ 1114 (1134)
......|+.+||..|+..++|+++.+++++|++|...|..
T Consensus 316 ~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~ 355 (357)
T 3d8b_A 316 PDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGC 355 (357)
T ss_dssp ---CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSC
T ss_pred ccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Confidence 2344689999999999999999999999999999999864
No 29
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=1e-31 Score=341.04 Aligned_cols=444 Identities=15% Similarity=0.216 Sum_probs=287.0
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCC----ceeeEEEEE
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVFV 627 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~----~~~~~~~~v 627 (1134)
.+..++|.+..+..+++.+.. ..+.++||+||||||||++|+++|+.+.... .....++.+
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~---------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSR---------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHC---------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCCccCchHHHHHHHHHHhC---------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 466789999998888775422 2346799999999999999999999984321 012456666
Q ss_pred ecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCC
Q 001162 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1134)
Q Consensus 628 ~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1134)
++ ...+.+.++..++.+|..+....|+||||| .. . ...+.|...++ .
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~----------~----~~~~~L~~~l~-----------~ 289 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA----------I----DASNILKPSLA-----------R 289 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------CCCTT-----------S
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc----------h----hHHHHHHHHHh-----------c
Confidence 66 333456666778889999988889999999 10 0 11122222222 1
Q ss_pred CcEEEEEecCCCC-----CCChhhccCCCccccccCCCCCHHHHHHHHHHHhhh----cccCCCHHHHHHHhhhc-----
Q 001162 708 GPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKC----- 773 (1134)
Q Consensus 708 ~~V~vIattn~~~-----~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~----~~l~~~~~~l~~la~~t----- 773 (1134)
+.+.+|++||..+ .++++|++ ||. .+.|+.|+.+++.+||+.+... .++.++++.+..++..+
T Consensus 290 ~~v~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~ 366 (758)
T 3pxi_A 290 GELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYIS 366 (758)
T ss_dssp SSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSC
T ss_pred CCEEEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccc
Confidence 2589999999888 68999999 995 7999999999999999987665 45678888888777765
Q ss_pred CCCChhhHHHHHHHHHHHHhcccccCCCcc--------------------------------------------------
Q 001162 774 DGYDAYDLEILVDRTVHAAVGRYLHSDSSF-------------------------------------------------- 803 (1134)
Q Consensus 774 eG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~-------------------------------------------------- 803 (1134)
+++.+.+...+++.|+..+..+........
T Consensus 367 ~~~~p~~ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 446 (758)
T 3pxi_A 367 DRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEK 446 (758)
T ss_dssp CSCTTHHHHHHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHH
T ss_pred cCcCCcHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677788888887755433211000000
Q ss_pred ccccccccchhhhHhhhhccccceeccccccccC----CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCC
Q 001162 804 EKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAE----GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRS 879 (1134)
Q Consensus 804 ~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~~----~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~ 879 (1134)
.......++.+++...+...+............. ....-..++.|++.+++.+.+.+...... ...+.++..
T Consensus 447 ~~~~~~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~----~~~~~~p~~ 522 (758)
T 3pxi_A 447 QGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAG----LKDPKRPIG 522 (758)
T ss_dssp HHCC---CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTT----CSCTTSCSE
T ss_pred hcccCcccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHcc----cCCCCCCce
Confidence 0001123444444444433332111000000000 00011246889999999888887643210 011223344
Q ss_pred ceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCC
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD 956 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~ 956 (1134)
++||+||||||||++|+++|+.+ +.+|+.++++++...+... ...++...+...++||||||||.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~------- 591 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLDAIEKA------- 591 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGS-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhCCCeEEEEeCcccc-------
Confidence 79999999999999999999987 6899999999998877654 122334445566789999999987
Q ss_pred CCcchhhHHHhHhhhccccc---------ccccEEEEEecCCCCc------------cchhhcCcCcccceeecCCCCHH
Q 001162 957 NTGVTDRVVNQFLTELDGVE---------VLTGVFVFAATSRPDL------------LDAALLRPGRLDRLLFCDFPSPR 1015 (1134)
Q Consensus 957 ~~~~~~rv~~~lL~~ld~~~---------~~~~v~vIatTn~p~~------------ld~allrpgRfd~~i~~~~p~~~ 1015 (1134)
...+.+.|++.|+.-. ...+++||+|||.+.. ++|+|++ ||+..+.|++|+.+
T Consensus 592 ----~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~ 665 (758)
T 3pxi_A 592 ----HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKK 665 (758)
T ss_dssp ----CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHH
T ss_pred ----CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHH
Confidence 4578889998887522 2346789999997543 6788888 99999999999999
Q ss_pred HHHHHHHHHHccC-------CCCCccc---HHHHHHh--ccCCcHHHHHHHHHHHHHHHHHHHH
Q 001162 1016 ERLDILKVISRKL-------PLADDVD---LEAIAHM--TEGFSGADLQALLSDAQLSAVHEIL 1067 (1134)
Q Consensus 1016 er~~Il~~~~~~~-------~~~~~vd---~~~La~~--t~g~sg~dl~~l~~~A~~~a~~~~~ 1067 (1134)
++..|++.++..+ +..-.++ .+.|+.. ...+..++|+++++.+...++.+.+
T Consensus 666 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~ 729 (758)
T 3pxi_A 666 HLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEEL 729 (758)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 9999998876542 2222233 4455442 2345678999999988887766554
No 30
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.98 E-value=1.4e-31 Score=295.75 Aligned_cols=245 Identities=37% Similarity=0.644 Sum_probs=215.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
+...|++++|++.+++.+.+.+.+ +.++..+...+...+.+++|+||||||||++|+++|++++.+++.++++++.+.+
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~ 85 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 85 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSC
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHh
Confidence 457899999999999999988775 5666777777888888999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCC---CcchhhHHHhHhhhcccccccccEEEEEecCCCCccch
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~---~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~ 995 (1134)
.|..+..++.+|+.|....|+++||||+|.+.+.++... .....+++++++..|++.....+++||+|||+++.+|+
T Consensus 86 ~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~ 165 (257)
T 1lv7_A 86 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP 165 (257)
T ss_dssp CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCG
T ss_pred hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCH
Confidence 999999999999999998999999999999988765432 22234788999999998887788999999999999999
Q ss_pred hhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 001162 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEP 1075 (1134)
Q Consensus 996 allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 1075 (1134)
+++|+|||++.++|++|+.++|.+|++.++++.++..++++..++..+.||+++||.++|+.|+..|..+
T Consensus 166 ~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~---------- 235 (257)
T 1lv7_A 166 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG---------- 235 (257)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT----------
T ss_pred HHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh----------
Confidence 9999999999999999999999999999999988888899999999999999999999999999888754
Q ss_pred CCcccccHHHHHHHHhhcCC
Q 001162 1076 GKMPVITDALLKSIASKARP 1095 (1134)
Q Consensus 1076 ~~~~~it~e~l~~al~~~~p 1095 (1134)
+...|+.+||..|++.+..
T Consensus 236 -~~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 236 -NKRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp -TCSSBCHHHHHHHHHHHTT
T ss_pred -CCCcccHHHHHHHHHHHhc
Confidence 2357999999999987653
No 31
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.98 E-value=8.8e-32 Score=315.51 Aligned_cols=273 Identities=32% Similarity=0.490 Sum_probs=225.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
....|++|+|++.+++.|.+.+.++..++++|...+ .++.++||+||||||||++|+++|.+++.+|+.++++++.+.|
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKY 188 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC----
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccc
Confidence 457899999999999999999998888777777655 4567999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccc--cccEEEEEecCCCCccchh
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV--LTGVFVFAATSRPDLLDAA 996 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~--~~~v~vIatTn~p~~ld~a 996 (1134)
.|..+..++.+|..|+...|+||||||||.|+..+.........++.++|+..|++... ..+++||+|||+++.+|++
T Consensus 189 ~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~ 268 (389)
T 3vfd_A 189 VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEA 268 (389)
T ss_dssp ---CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHH
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHH
Confidence 99999999999999999999999999999999888766677788999999999997764 4679999999999999999
Q ss_pred hcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCC-CC
Q 001162 997 LLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDS-NE 1074 (1134)
Q Consensus 997 llrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~-~~ 1074 (1134)
++| ||+..++|+.|+.++|.+||+.++...+.. .+.++..|+..++||++++|..+|+.|+..++++....... ..
T Consensus 269 l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~ 346 (389)
T 3vfd_A 269 VLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMS 346 (389)
T ss_dssp HHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCS
T ss_pred HHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccc
Confidence 999 999999999999999999999998876543 45578899999999999999999999999998875432221 11
Q ss_pred CCCcccccHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhc
Q 001162 1075 PGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLD 1114 (1134)
Q Consensus 1075 ~~~~~~it~e~l~~al~~~~ps~~~~~~~~~~~~~~~f~~ 1114 (1134)
......|+.+||..+++..+|+++.+.++.|++|..+|.+
T Consensus 347 ~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~ 386 (389)
T 3vfd_A 347 ASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGD 386 (389)
T ss_dssp SSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC-
T ss_pred hhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 2344679999999999999999999999999999999854
No 32
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.97 E-value=2.9e-31 Score=293.22 Aligned_cols=244 Identities=33% Similarity=0.598 Sum_probs=196.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcc
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~ 919 (1134)
...|++++|++++++.+.+.+.+ +.+++.+...+...+.++||+||||||||++|+++|++++.+++.++++++.+.|.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 47899999999999999998875 56677788888888999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCC----CcchhhHHHhHhhhcccccccccEEEEEecCCCCccch
Q 001162 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN----TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1134)
Q Consensus 920 G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~----~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~ 995 (1134)
|.++..++.+|..|....|+||||||+|.+..+++... .....+.++.++..|++.....+++||+|||.++.+|+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 99999999999999988999999999999988764432 23345678899999988777788999999999999999
Q ss_pred hhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCccc--HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCC
Q 001162 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVD--LEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN 1073 (1134)
Q Consensus 996 allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd--~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~ 1073 (1134)
+++|+|||+..++|++|+.++|.+|++.+++..++..+.+ ...++..+.||+|+||.++|+.|+..|+.+
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~-------- 232 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE-------- 232 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC------------
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc--------
Confidence 9999999999999999999999999999998887664433 478999999999999999999999887654
Q ss_pred CCCCcccccHHHHHHHHhhcCC
Q 001162 1074 EPGKMPVITDALLKSIASKARP 1095 (1134)
Q Consensus 1074 ~~~~~~~it~e~l~~al~~~~p 1095 (1134)
+...|+.+||..|++.+.+
T Consensus 233 ---~~~~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 233 ---GHTSVHTLNFEYAVERVLA 251 (262)
T ss_dssp -------CCBCCHHHHHHHHHH
T ss_pred ---CCCCCCHHHHHHHHHHhcc
Confidence 2246888999999877644
No 33
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.97 E-value=2.8e-30 Score=331.22 Aligned_cols=463 Identities=16% Similarity=0.236 Sum_probs=285.2
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc----eeeEEEE
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVF 626 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~----~~~~~~~ 626 (1134)
..+..++|.+..+..+++.+.. ..+.++||+||||||||++++++|+.+..... ....+++
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~---------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLR---------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHC---------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred CCCcccCCcHHHHHHHHHHHhc---------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 3466788899888877765421 22356999999999999999999999843110 1267888
Q ss_pred Eeccccc--ccchhhHHHHHHHHHHHHhhc-CCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccccc
Q 001162 627 VCCSRLS--LEKGPIIRQALSNFISEALDH-APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKS 703 (1134)
Q Consensus 627 v~~s~l~--~~~~~~~~~~l~~~f~~a~~~-~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~ 703 (1134)
++|+.+. ..+.+.....+..+|..+... .|.||||||+|.+.+.... ++. ..+.+.|...++.
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~-~g~------~~~~~~L~~~l~~------- 297 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA-EGA------VDAGNMLKPALAR------- 297 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------------HHHHHT-------
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc-cch------HHHHHHHHHHHhC-------
Confidence 9998876 345567788889999988764 6899999999999753222 111 1233444444432
Q ss_pred ccCCCcEEEEEecCCCC----CCChhhccCCCccccccCCCCCHHHHHHHHHHHhhh----cccCCCHHHHHHHhhhcC-
Q 001162 704 SCGIGPIAFVASAQSLE----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCD- 774 (1134)
Q Consensus 704 ~~~~~~V~vIattn~~~----~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~----~~l~~~~~~l~~la~~te- 774 (1134)
+.+.+|++|+..+ .++++|.+ ||. .+.|++|+.+++.+|++.++.. +++.++++.+..++..+.
T Consensus 298 ----~~i~~I~at~~~~~~~~~~d~aL~r--Rf~-~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r 370 (854)
T 1qvr_A 298 ----GELRLIGATTLDEYREIEKDPALER--RFQ-PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHR 370 (854)
T ss_dssp ----TCCCEEEEECHHHHHHHTTCTTTCS--CCC-CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHH
T ss_pred ----CCeEEEEecCchHHhhhccCHHHHh--CCc-eEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhh
Confidence 1367888888764 47899999 998 5999999999999999876653 356788888888877654
Q ss_pred ----CCChhhHHHHHHHHHHHHhccccc-----------------------CCCcc-c----------------------
Q 001162 775 ----GYDAYDLEILVDRTVHAAVGRYLH-----------------------SDSSF-E---------------------- 804 (1134)
Q Consensus 775 ----G~s~~DL~~Lv~~a~~~a~~r~~~-----------------------~~~~~-~---------------------- 804 (1134)
+|.+.....++++|+..+..+... ..... .
T Consensus 371 ~i~~~~lp~kai~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (854)
T 1qvr_A 371 YITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLR 450 (854)
T ss_dssp HCCSSCTHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHH
T ss_pred hcccccChHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777776544322100 00000 0
Q ss_pred ----------------------------------------------------------------cccccccchhhhHhhh
Q 001162 805 ----------------------------------------------------------------KHIKPTLVRDDFSQAM 820 (1134)
Q Consensus 805 ----------------------------------------------------------------~~~~~~lt~eDf~~Al 820 (1134)
......++.+++...+
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~v 530 (854)
T 1qvr_A 451 AEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIV 530 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhhhcccccccCCcCHHHHHHHH
Confidence 0001112223333322
Q ss_pred hccccceecccccccc----CCCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHH
Q 001162 821 HEFLPVAMRDITKTSA----EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVG 896 (1134)
Q Consensus 821 ~~~~P~~lr~v~~~~~----~~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~ 896 (1134)
...+............ ......+.+++|.+.+.+.+...+...... ...+.++..++||+||||||||++|+
T Consensus 531 ~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g----~~~~~~p~~~vLl~Gp~GtGKT~lA~ 606 (854)
T 1qvr_A 531 SRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAG----LKDPNRPIGSFLFLGPTGVGKTELAK 606 (854)
T ss_dssp HTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGG----CSCSSSCSEEEEEBSCSSSSHHHHHH
T ss_pred HHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhcc----cCCCCCCceEEEEECCCCCCHHHHHH
Confidence 2221100000000000 000011345788888888887776532100 00112344589999999999999999
Q ss_pred HHHHHc---CCcEEEEeCcccchh------------cccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcch
Q 001162 897 AAAAAC---SLRFISVKGPELLNK------------YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT 961 (1134)
Q Consensus 897 alA~~~---~~~~i~i~~~el~~~------------~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~ 961 (1134)
++|+.+ +.+|+.++|+++... |+|..+ ...+....+...++||||||+|.+ .
T Consensus 607 ~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l-----------~ 673 (854)
T 1qvr_A 607 TLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKA-----------H 673 (854)
T ss_dssp HHHHHHHSSGGGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCSSEEEEESSGGGS-----------C
T ss_pred HHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEeccccc-----------C
Confidence 999998 789999999887543 334332 123334445556689999999987 4
Q ss_pred hhHHHhHhhhccccc---------ccccEEEEEecCCC--------------------------CccchhhcCcCcccce
Q 001162 962 DRVVNQFLTELDGVE---------VLTGVFVFAATSRP--------------------------DLLDAALLRPGRLDRL 1006 (1134)
Q Consensus 962 ~rv~~~lL~~ld~~~---------~~~~v~vIatTn~p--------------------------~~ld~allrpgRfd~~ 1006 (1134)
..+.+.|++.|+.-. ...+++||+|||.+ ..+.|+|+. ||+.+
T Consensus 674 ~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~ 751 (854)
T 1qvr_A 674 PDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEI 751 (854)
T ss_dssp HHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBC
T ss_pred HHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeE
Confidence 578899999987432 23478899999973 124566666 99999
Q ss_pred eecCCCCHHHHHHHHHHHHccC-------CCC---CcccHHHHHHhcc--CCcHHHHHHHHHHHHHHHHHHHHh
Q 001162 1007 LFCDFPSPRERLDILKVISRKL-------PLA---DDVDLEAIAHMTE--GFSGADLQALLSDAQLSAVHEILN 1068 (1134)
Q Consensus 1007 i~~~~p~~~er~~Il~~~~~~~-------~~~---~~vd~~~La~~t~--g~sg~dl~~l~~~A~~~a~~~~~~ 1068 (1134)
+.|++|+.+++..|++.+++.. ++. ++..++.|+.... .++.++|+++++.+...++.+.+-
T Consensus 752 i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~ 825 (854)
T 1qvr_A 752 VVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKIL 825 (854)
T ss_dssp CBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876532 111 2223555666544 567899999999998887766554
No 34
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.97 E-value=7.8e-31 Score=313.13 Aligned_cols=245 Identities=40% Similarity=0.678 Sum_probs=219.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
+...|++++|+++++..+.+.+.. +..+..+.+.+...+.|+||+||||||||++|+++|.+++.+|+.++++++...|
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 457899999999999999998875 4566778888888889999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCC---CCcchhhHHHhHhhhcccccccccEEEEEecCCCCccch
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD---NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~---~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~ 995 (1134)
.|.....++.+|+.|+...|+|+||||+|.+...++.. ......+.+++++.+|++......++++++||+|+.+|+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 99999999999999988889999999999998876532 123345788999999999887788999999999999999
Q ss_pred hhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 001162 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEP 1075 (1134)
Q Consensus 996 allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 1075 (1134)
+++|||||++.+.|++|+.++|.+||+.++++.++..++++..+|..+.||+|+||+++|++|++.|.++
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~---------- 254 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE---------- 254 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTT----------
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh----------
Confidence 9999999999999999999999999999999888888999999999999999999999999998877532
Q ss_pred CCcccccHHHHHHHHhhcCC
Q 001162 1076 GKMPVITDALLKSIASKARP 1095 (1134)
Q Consensus 1076 ~~~~~it~e~l~~al~~~~p 1095 (1134)
+...|+.+||..|+..+.+
T Consensus 255 -~~~~It~~dl~~al~~v~~ 273 (499)
T 2dhr_A 255 -GRRKITMKDLEEAADRVMM 273 (499)
T ss_dssp -CCSSCCSHHHHHHHHHHTT
T ss_pred -CCCccCHHHHHHHHHHHhc
Confidence 2347999999999987654
No 35
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.97 E-value=7e-30 Score=281.55 Aligned_cols=240 Identities=41% Similarity=0.693 Sum_probs=210.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
+...|++++|+++++..+.+.... ...+..+...++..+.|++|+||||||||++++++|..++..++.+++.++...+
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 89 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 89 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHH
Confidence 457899999999999999988765 3456778888888888999999999999999999999999999999999998888
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCC---CCcchhhHHHhHhhhcccccccccEEEEEecCCCCccch
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD---NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~---~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~ 995 (1134)
.|.....++.+|+.+....|+++|+||+|.+...++.. ......+.+++++.+|++.+....++++++||+|+.+|+
T Consensus 90 ~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~ 169 (254)
T 1ixz_A 90 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 169 (254)
T ss_dssp TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCG
T ss_pred hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCH
Confidence 88888899999999988889999999999998766432 223345778999999998887778999999999999999
Q ss_pred hhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 001162 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEP 1075 (1134)
Q Consensus 996 allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 1075 (1134)
+++|+|||++.++++.|+.++|.+||+.+++..++..++++..++..++||+|+||.++|++|+..|..+
T Consensus 170 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~---------- 239 (254)
T 1ixz_A 170 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE---------- 239 (254)
T ss_dssp GGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT----------
T ss_pred HHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh----------
Confidence 9999999999999999999999999999998888888999999999999999999999999999887653
Q ss_pred CCcccccHHHHHHHH
Q 001162 1076 GKMPVITDALLKSIA 1090 (1134)
Q Consensus 1076 ~~~~~it~e~l~~al 1090 (1134)
....||.+||.+|+
T Consensus 240 -~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 240 -GRRKITMKDLEEAA 253 (254)
T ss_dssp -TCSSBCHHHHHHHT
T ss_pred -cCCCcCHHHHHHHh
Confidence 22469999999886
No 36
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.97 E-value=1.2e-28 Score=295.06 Aligned_cols=277 Identities=23% Similarity=0.339 Sum_probs=217.0
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~ 631 (1134)
.+.+++|.+..+..+.+.+...+. .+.+|..++..++.++||+||||||||++|+++++.++ .++++++|..
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~--~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~------~~fv~vn~~~ 273 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLR--HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG------AFFFLINGPE 273 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHH--CHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS------SEEEEEEHHH
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhh--CHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC------CCEEEEEchH
Confidence 467899999999999998865443 46788899999999999999999999999999999986 7899999999
Q ss_pred ccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEE
Q 001162 632 LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIA 711 (1134)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~ 711 (1134)
+.....+.....++.+|..+....|++|||||+|.+.+.+... .......+...|+..++..... .+++
T Consensus 274 l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~----~~~~~~~~~~~LL~~ld~~~~~-------~~v~ 342 (489)
T 3hu3_A 274 IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQR-------AHVI 342 (489)
T ss_dssp HHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC----CCHHHHHHHHHHHHHHHHSCTT-------SCEE
T ss_pred hhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc----cchHHHHHHHHHHHHhhccccC-------CceE
Confidence 9988888999999999999999999999999999998654322 2234457777888888865432 2599
Q ss_pred EEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHH
Q 001162 712 FVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1134)
Q Consensus 712 vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~ 791 (1134)
||++||.++.++++++++|||+..++++.|+.++|.+||+.++....+. .+..+..++..+.||+++|+..+|++|...
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~dL~~L~~~A~~~ 421 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQ 421 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988765443 333478899999999999999999999999
Q ss_pred HhcccccCCCc------cccccccccchhhhHhhhhccccceeccccccccCCCCCCCCCCCChhH
Q 001162 792 AVGRYLHSDSS------FEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTD 851 (1134)
Q Consensus 792 a~~r~~~~~~~------~~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~~~~~~~~~~i~gl~~ 851 (1134)
+..+....... ........++.+||..|+..+.|+.++++....| .+.|+||||...
T Consensus 422 a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p---~v~W~dig~~~~ 484 (489)
T 3hu3_A 422 AIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVP---QVTWEDIGGRSH 484 (489)
T ss_dssp HHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC------------------
T ss_pred HHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCC---CCCHHHcCCCcc
Confidence 98765321100 0011224689999999999999999998876665 499999999753
No 37
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.96 E-value=3.6e-31 Score=293.99 Aligned_cols=250 Identities=33% Similarity=0.605 Sum_probs=215.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
+...|++++|++.+++.+.+.+.. +.+++.|.+.+...+.++||+||||||||++|+++|++++.+|+.++++++.+.|
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 84 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMF 84 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhh
Confidence 457899999999999999998875 6778888888888889999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCC----CCcchhhHHHhHhhhcccccc-cccEEEEEecCCCCcc
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD----NTGVTDRVVNQFLTELDGVEV-LTGVFVFAATSRPDLL 993 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~----~~~~~~rv~~~lL~~ld~~~~-~~~v~vIatTn~p~~l 993 (1134)
.|.++..++.+|+.|....|+||||||+|.+...+..+ ......+++++++..|++... ..+++||+|||.++.+
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l 164 (268)
T 2r62_A 85 VGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEIL 164 (268)
T ss_dssp SSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTS
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhc
Confidence 99988888999999999899999999999998875321 122334678889999987654 3459999999999999
Q ss_pred chhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCC
Q 001162 994 DAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN 1073 (1134)
Q Consensus 994 d~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~ 1073 (1134)
|++++|+|||+..++|++|+.++|.+||+.+++..++..+++++.++..+.||+|+||.++|+.|+..|..+
T Consensus 165 d~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~-------- 236 (268)
T 2r62_A 165 DPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRN-------- 236 (268)
T ss_dssp CGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSS--------
T ss_pred CHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh--------
Confidence 999999999999999999999999999999999888888888999999999999999999999988766321
Q ss_pred CCCCcccccHHHHHHHHhhcCCCCcHH
Q 001162 1074 EPGKMPVITDALLKSIASKARPSVSEA 1100 (1134)
Q Consensus 1074 ~~~~~~~it~e~l~~al~~~~ps~~~~ 1100 (1134)
+...|+.+|+..++....|+...+
T Consensus 237 ---~~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 237 ---NQKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp ---CCCSCCHHHHHTSCTTCCCCCC--
T ss_pred ---ccCCcCHHHHHHHHHHHhhcchhh
Confidence 235799999999999998876544
No 38
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.96 E-value=1.9e-28 Score=273.94 Aligned_cols=240 Identities=41% Similarity=0.693 Sum_probs=209.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
+...|++++|++++++.+.+.... ...+..+...++..+.|++|+||||||||++++++|..++..++.+++.++...+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 113 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence 457899999999999999988765 3456778888888888999999999999999999999999999999999988888
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCC---CCcchhhHHHhHhhhcccccccccEEEEEecCCCCccch
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD---NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~---~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~ 995 (1134)
.|.....++.+|+.+....|+++|+||+|.+...+... ......+.+++++.+|++......++++++||+|+.+|+
T Consensus 114 ~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~ 193 (278)
T 1iy2_A 114 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 193 (278)
T ss_dssp TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCH
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCH
Confidence 88888889999999988889999999999998765432 122345778899999998877778999999999999999
Q ss_pred hhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 001162 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEP 1075 (1134)
Q Consensus 996 allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 1075 (1134)
+++|++||++.++|++|+.++|.+||+.+++...+..++++..++..++||+|+||.++|+.|+..|..+
T Consensus 194 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~---------- 263 (278)
T 1iy2_A 194 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE---------- 263 (278)
T ss_dssp HHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT----------
T ss_pred hHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh----------
Confidence 9999999999999999999999999999998888888899999999999999999999999998887643
Q ss_pred CCcccccHHHHHHHH
Q 001162 1076 GKMPVITDALLKSIA 1090 (1134)
Q Consensus 1076 ~~~~~it~e~l~~al 1090 (1134)
+...||.+||.+|+
T Consensus 264 -~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 264 -GRRKITMKDLEEAA 277 (278)
T ss_dssp -TCCSBCHHHHHHHT
T ss_pred -CCCCcCHHHHHHHh
Confidence 22469999999886
No 39
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.95 E-value=4.1e-27 Score=262.29 Aligned_cols=260 Identities=22% Similarity=0.301 Sum_probs=194.1
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s 630 (1134)
.++.+++|++..++++.+.+...+ ..+..+..+++..+.|++|+||||||||+|++++|..++ ..++.+++.
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~--~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~------~~~i~i~g~ 78 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPV--RNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG------LNFISVKGP 78 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHH--HSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT------CEEEEEETT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHh--hCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC------CCEEEEEcH
Confidence 357789999999999888764322 245678889999999999999999999999999999986 568889999
Q ss_pred cccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcE
Q 001162 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1134)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1134)
.+...+.+...+.+..+|+.+....|+++|+||+|.+++.+...... ....+.+.+...++...... .+
T Consensus 79 ~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~----~~~~~~~~~l~~Lsgg~~~~-------~~ 147 (274)
T 2x8a_A 79 ELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETG----ASVRVVNQLLTEMDGLEARQ-------QV 147 (274)
T ss_dssp TTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-------------CTTHHHHHHHHHHTCCSTT-------CE
T ss_pred HHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcch----HHHHHHHHHHHhhhcccccC-------CE
Confidence 98887788888889999999988899999999999987543321111 11234555666666543322 48
Q ss_pred EEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhc-ccCC-CHHHHHHHhhh--cCCCChhhHHHHHH
Q 001162 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRR-SLEC-SDEILLDVASK--CDGYDAYDLEILVD 786 (1134)
Q Consensus 711 ~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~-~l~~-~~~~l~~la~~--teG~s~~DL~~Lv~ 786 (1134)
++++++|.++.+|++++|+|||+..++++.|+.++|.+||+.++... .... .+..+..+|.. |+||+++||..+|+
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~ 227 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVR 227 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHH
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987642 2222 23357888886 45999999999999
Q ss_pred HHHHHHhcccccCCCccccccccccchhhhHhhhhccccceec
Q 001162 787 RTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMR 829 (1134)
Q Consensus 787 ~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~lr 829 (1134)
+|+..++.+...............++.+||..|+..+.|+..+
T Consensus 228 ~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~~~ 270 (274)
T 2x8a_A 228 EASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSISK 270 (274)
T ss_dssp HHHHHHHHHHC-----------CCBCHHHHHHHHTTCCCCC--
T ss_pred HHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcCCCCh
Confidence 9999988765422211112233579999999999999886543
No 40
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.5e-26 Score=263.79 Aligned_cols=226 Identities=20% Similarity=0.299 Sum_probs=188.3
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s 630 (1134)
.++++++|++..++.+.+.+...+. .+.+|.. +..+++++|||||||||||++|+++|+++.. .+++.++|+
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~--~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~-----~~~~~i~~~ 80 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIK--FPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANN-----STFFSISSS 80 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHH--CGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTS-----CEEEEEECC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHh--CHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCC-----CcEEEEEhH
Confidence 4578999999999999887754332 2344443 3566789999999999999999999999821 678899999
Q ss_pred cccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcE
Q 001162 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1134)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1134)
.+...+.+...+.++.+|..+...+|+||||||+|.+++.+... .......+...|+..++.+.... .++
T Consensus 81 ~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~ld~~~~~~------~~v 150 (322)
T 1xwi_A 81 DLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN----ESEAARRIKTEFLVQMQGVGVDN------DGI 150 (322)
T ss_dssp SSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC----CTTHHHHHHHHHHHHHHCSSSCC------TTE
T ss_pred HHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc----cchHHHHHHHHHHHHHhcccccC------CCE
Confidence 99888888888999999999999999999999999998654332 22334466777777777654211 259
Q ss_pred EEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHH
Q 001162 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 711 ~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~ 790 (1134)
+||++||.++.+++++++ ||+..++++.|+.++|.+|++.++......+++..+..++..++||+++||..+|++|+.
T Consensus 151 ~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~ 228 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALM 228 (322)
T ss_dssp EEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHT
T ss_pred EEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999877777789999999999999999999999999998
Q ss_pred HHhccc
Q 001162 791 AAVGRY 796 (1134)
Q Consensus 791 ~a~~r~ 796 (1134)
.++.+.
T Consensus 229 ~a~r~~ 234 (322)
T 1xwi_A 229 QPVRKV 234 (322)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887664
No 41
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.95 E-value=1.3e-26 Score=264.74 Aligned_cols=256 Identities=18% Similarity=0.291 Sum_probs=204.6
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s 630 (1134)
.++.+++|.+..++.+.+.+...+. .+.++.. +..++.++|||||||||||++|+++|++++ .+++.++|+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~--~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~------~~~~~v~~~ 85 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVK--FPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEAN------STFFSVSSS 85 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHH--CGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHT------CEEEEEEHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHh--CHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHC------CCEEEEchH
Confidence 4578999999999999887754332 2344444 456678899999999999999999999987 789999999
Q ss_pred cccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcE
Q 001162 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1134)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1134)
.+.+.+.+...+.++.+|..+....|+||||||+|.+.+.+..... .....+...++..++...... .++
T Consensus 86 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~----~~~~~~~~~ll~~l~~~~~~~------~~v 155 (322)
T 3eie_A 86 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGES----EASRRIKTELLVQMNGVGNDS------QGV 155 (322)
T ss_dssp HHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC----------CCTHHHHHHHHHHHGGGGTSC------CCE
T ss_pred HHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcc----hHHHHHHHHHHHHhccccccC------Cce
Confidence 9999999999999999999999999999999999999865433221 122356677777777654222 259
Q ss_pred EEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHH
Q 001162 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 711 ~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~ 790 (1134)
+||++||.++.+++++++ ||+..++++.|+.++|.+|++.++......+++..+..++..++||+++||..+|++|..
T Consensus 156 ~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~ 233 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALM 233 (322)
T ss_dssp EEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTT
T ss_pred EEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999887777889999999999999999999999999988
Q ss_pred HHhcccccCCC--------------------------------ccccccccccchhhhHhhhhccccce
Q 001162 791 AAVGRYLHSDS--------------------------------SFEKHIKPTLVRDDFSQAMHEFLPVA 827 (1134)
Q Consensus 791 ~a~~r~~~~~~--------------------------------~~~~~~~~~lt~eDf~~Al~~~~P~~ 827 (1134)
.++.+...... .........++.+||..|+....|+.
T Consensus 234 ~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~ 302 (322)
T 3eie_A 234 QPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV 302 (322)
T ss_dssp HHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSS
T ss_pred HHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCC
Confidence 88776432100 00011124589999999998887763
No 42
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.94 E-value=3.1e-27 Score=299.59 Aligned_cols=257 Identities=41% Similarity=0.649 Sum_probs=233.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcc
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~ 919 (1134)
.+.|++|+|++.+++.|.+.+.+++.++++|...+..++.++||+||||||||++|+++|.+++.+++.++++++.+.|.
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~ 279 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSST
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcC
Q 001162 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLR 999 (1134)
Q Consensus 920 G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allr 999 (1134)
|+.+..++.+|+.+....|+++||||+|.+.+.++........+++++++..|++......+++|+|||+++.+|+++.|
T Consensus 280 g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r 359 (806)
T 1ypw_A 280 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRR 359 (806)
T ss_dssp THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTS
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhc
Confidence 99999999999999999999999999999999887777777889999999999998888889999999999999999999
Q ss_pred cCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCC------
Q 001162 1000 PGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSN------ 1073 (1134)
Q Consensus 1000 pgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~------ 1073 (1134)
+|||++.+.++.|+.++|.+|++.+++++.+..++++..++..++||+++|+.++|.+|++.++++........
T Consensus 360 ~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~ 439 (806)
T 1ypw_A 360 FGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDA 439 (806)
T ss_dssp TTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCH
T ss_pred ccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhhccch
Confidence 99999999999999999999999999999988899999999999999999999999999999887654322110
Q ss_pred CCCCcccccHHHHHHHHhhcCCC
Q 001162 1074 EPGKMPVITDALLKSIASKARPS 1096 (1134)
Q Consensus 1074 ~~~~~~~it~e~l~~al~~~~ps 1096 (1134)
.......++.+|+..++....|+
T Consensus 440 ~~~~~~~v~~~d~~~al~~~~~s 462 (806)
T 1ypw_A 440 EVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp HHHTTCCCCTTHHHHHHHHSCCC
T ss_pred hhhhhhhhhhhhhhccccccCch
Confidence 00123457888999988877664
No 43
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.94 E-value=3.1e-26 Score=264.83 Aligned_cols=258 Identities=17% Similarity=0.285 Sum_probs=201.8
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
...+.+++|++..++.+.+.+...+. .+.+|.. +..++.++|||||||||||++|+++|++++ .+++.++|
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~--~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~------~~~~~v~~ 117 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVK--FPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEAN------STFFSVSS 117 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHH--CGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHT------CEEEEEEH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHh--CHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhC------CCEEEeeH
Confidence 34578999999999999887754322 2344554 456778899999999999999999999987 78999999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
..+...+.+...+.++.+|..+....|+||||||+|.+.+.+... .......+...|+..++.+.... .+
T Consensus 118 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~----~~~~~~~~~~~ll~~l~~~~~~~------~~ 187 (355)
T 2qp9_X 118 SDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG----ESEASRRIKTELLVQMNGVGNDS------QG 187 (355)
T ss_dssp HHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC----------CTHHHHHHHHHHHHHHHCC---------CC
T ss_pred HHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC----cchHHHHHHHHHHHHhhcccccC------CC
Confidence 999888888888899999999998999999999999998644322 22334566777777787654321 25
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
++||++||.++.+++++++ ||+..++++.|+.++|.+|++.++......+++..+..|+..++||+++||..+|++|+
T Consensus 188 v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~ 265 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDAL 265 (355)
T ss_dssp EEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999988777778889999999999999999999999999
Q ss_pred HHHhcccccCC-------C-------------------------ccccccccccchhhhHhhhhcccccee
Q 001162 790 HAAVGRYLHSD-------S-------------------------SFEKHIKPTLVRDDFSQAMHEFLPVAM 828 (1134)
Q Consensus 790 ~~a~~r~~~~~-------~-------------------------~~~~~~~~~lt~eDf~~Al~~~~P~~l 828 (1134)
..++.+..... . .........++.+||..|+..+.|+..
T Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~ 336 (355)
T 2qp9_X 266 MQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 336 (355)
T ss_dssp HHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCC
Confidence 99887632110 0 000011245889999999999888743
No 44
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.94 E-value=1.7e-26 Score=261.12 Aligned_cols=259 Identities=21% Similarity=0.307 Sum_probs=201.0
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s 630 (1134)
.++.+++|++..++.+.+.+...+. .++.|..++..++.++||+||||||||++|+++|+.++ .+++.++|.
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~--~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~------~~~i~v~~~ 83 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVE--HPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ------ANFISIKGP 83 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHH--CHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT------CEEEEECHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhh--CHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC------CCEEEEEhH
Confidence 4577899999999999988865332 46678888999999999999999999999999999986 788999999
Q ss_pred cccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcE
Q 001162 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1134)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1134)
.+...+.+...+.+..+|..+....|++|||||+|.+.+.+....+... .....+...|+..++.+... .++
T Consensus 84 ~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~-~~~~~~~~~lL~~l~~~~~~-------~~v 155 (301)
T 3cf0_A 84 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG-GAADRVINQILTEMDGMSTK-------KNV 155 (301)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSS-CSCCHHHHHHHHHHHSSCTT-------SSE
T ss_pred HHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcc-hHHHHHHHHHHHHhhcccCC-------CCE
Confidence 8876666666677889999999889999999999999864332211111 11124556666777754322 259
Q ss_pred EEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHH
Q 001162 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 711 ~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~ 790 (1134)
+||++||.++.++++++++|||+..++++.|+.++|.+|++.++....+. .+..+..++..++||+++||+.+|++|+.
T Consensus 156 ~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~~l~~~a~~ 234 (301)
T 3cf0_A 156 FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACK 234 (301)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred EEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998765543 23346788889999999999999999999
Q ss_pred HHhcccccCCCc-----------cc---cccccccchhhhHhhhhccccc
Q 001162 791 AAVGRYLHSDSS-----------FE---KHIKPTLVRDDFSQAMHEFLPV 826 (1134)
Q Consensus 791 ~a~~r~~~~~~~-----------~~---~~~~~~lt~eDf~~Al~~~~P~ 826 (1134)
.+..+....... .. ......++.+||..|+....|+
T Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s 284 (301)
T 3cf0_A 235 LAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 284 (301)
T ss_dssp HHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCS
T ss_pred HHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCC
Confidence 887664311000 00 0112468899999999887664
No 45
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.93 E-value=2.5e-25 Score=245.52 Aligned_cols=250 Identities=23% Similarity=0.289 Sum_probs=182.2
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s 630 (1134)
..|++++|.+..++.+.+.+..+.. +..+..++...+.++||+||||||||++|+++|++++ .+++.++|+
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~---~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~------~~~~~~~~~ 73 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKS---PERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ------VPFLAMAGA 73 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHC---CC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT------CCEEEEETT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHC---HHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC------CCEEEechH
Confidence 3577899999999988877655443 3457778888999999999999999999999999987 778999999
Q ss_pred cccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcE
Q 001162 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1134)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1134)
.+.....+.....+..+|..+....|+||||||+|.+.+.+...............+..++..++.... ..++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~-------~~~~ 146 (262)
T 2qz4_A 74 EFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT-------TDHV 146 (262)
T ss_dssp TTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT-------TCCE
T ss_pred HHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC-------CCCE
Confidence 998877777788889999999888899999999999975443221111111112334444445554322 1258
Q ss_pred EEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHH-HHHHhhhcCCCChhhHHHHHHHHH
Q 001162 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEI-LLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 711 ~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~-l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
++|+++|.++.++++++++|||+..++++.|+.++|.+|++.++...++....+. +..++..+.||+++|+..++++|+
T Consensus 147 ~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~ 226 (262)
T 2qz4_A 147 IVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAA 226 (262)
T ss_dssp EEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred EEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988777666553 578999999999999999999988
Q ss_pred HHHhcccccCCCccccccccccchhhhHhhhhccccce
Q 001162 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVA 827 (1134)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~ 827 (1134)
..+..+ ....++.+||..|+....+..
T Consensus 227 ~~a~~~-----------~~~~i~~~d~~~a~~~~~~~~ 253 (262)
T 2qz4_A 227 LHAARE-----------GHTSVHTLNFEYAVERVLAGT 253 (262)
T ss_dssp TC-------------------CCBCCHHHHHHHHHHHH
T ss_pred HHHHHc-----------CCCCCCHHHHHHHHHHhccCh
Confidence 766543 224688999999988776543
No 46
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.93 E-value=4.5e-25 Score=261.99 Aligned_cols=248 Identities=23% Similarity=0.311 Sum_probs=199.2
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
..+|.+++|.+..++++.+.+..+.. +..+..++...|+++||+||||||||++++++|.+++ .+++.++|
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~---~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~------~~f~~is~ 82 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKD---PSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN------VPFFHISG 82 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHC---THHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT------CCEEEEEG
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhC---hHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC------CCeeeCCH
Confidence 34688999999999999887765443 4567888899999999999999999999999999987 77889999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
+.+.....+.....++.+|..+....|+||||||+|.+.+.+....+. .........+.|+..++.+... .+
T Consensus 83 ~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g-~~~~~~~~l~~LL~~ld~~~~~-------~~ 154 (476)
T 2ce7_A 83 SDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGG-GHDEREQTLNQLLVEMDGFDSK-------EG 154 (476)
T ss_dssp GGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----------CHHHHHHHHHHHHHHHSCGG-------GT
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCc-CcHHHHHHHHHHHHHHhccCCC-------CC
Confidence 999888777778889999999999999999999999997644321111 1223345667777777765432 25
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
++||++||.++.++++++++|||+..+.++.|+.++|.+|++.++....+. .+..+..++..+.||+++||.++|++|+
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~-~~v~l~~la~~t~G~sgadL~~lv~~Aa 233 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA-EDVNLEIIAKRTPGFVGADLENLVNEAA 233 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc-chhhHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988765432 2233778999999999999999999998
Q ss_pred HHHhcccccCCCccccccccccchhhhHhhhhccccc
Q 001162 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1134)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~ 826 (1134)
..+..+ ....++.+||..|+....+.
T Consensus 234 l~A~~~-----------~~~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 234 LLAARE-----------GRDKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp HHHHHT-----------TCSSBCHHHHHHHHHHHC--
T ss_pred HHHHHc-----------CCCeecHHHHHHHHHHHhcC
Confidence 877643 22468999999999887654
No 47
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=7.5e-25 Score=245.24 Aligned_cols=248 Identities=23% Similarity=0.351 Sum_probs=200.4
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s 630 (1134)
..+.+++|.+..++.+.+.+...+. .+..+..++..++.++||+||||||||++|+++|+.++ .+++.++|.
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~------~~~~~v~~~ 85 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLK--HPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN------ATFIRVVGS 85 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHH--CHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT------CEEEEEEGG
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhh--CHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC------CCEEEEehH
Confidence 4578899999999999888765432 45678888889999999999999999999999999987 789999999
Q ss_pred cccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcE
Q 001162 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1134)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1134)
.+.....+.....+..+|..+....|+||||||+|.+.+.+.+....... .....+..+...++.+... .++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~-~~~~~l~~ll~~~~~~~~~-------~~~ 157 (285)
T 3h4m_A 86 ELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDR-EVQRTLMQLLAEMDGFDAR-------GDV 157 (285)
T ss_dssp GGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGG-HHHHHHHHHHHHHHTTCSS-------SSE
T ss_pred HHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccH-HHHHHHHHHHHHhhCCCCC-------CCE
Confidence 99988888888999999999999999999999999998654433222122 2223333333444433221 259
Q ss_pred EEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHH
Q 001162 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 711 ~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~ 790 (1134)
++|+|||.++.+++++++++||+..+.+++|+.++|.+|++.++....+. .+..+..++..+.||+++|+..++++|..
T Consensus 158 ~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~ 236 (285)
T 3h4m_A 158 KIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTEAGM 236 (285)
T ss_dssp EEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988765443 33347889999999999999999999998
Q ss_pred HHhcccccCCCccccccccccchhhhHhhhhccccc
Q 001162 791 AAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1134)
Q Consensus 791 ~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~ 826 (1134)
.+..+ ....++.+||.+|+....+.
T Consensus 237 ~a~~~-----------~~~~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 237 NAIRE-----------LRDYVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp HHHHT-----------TCSSBCHHHHHHHHHHHHHH
T ss_pred HHHHh-----------ccCcCCHHHHHHHHHHHHhc
Confidence 88765 22468999999998876543
No 48
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.93 E-value=1.9e-24 Score=238.50 Aligned_cols=246 Identities=21% Similarity=0.283 Sum_probs=190.7
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
...|++++|.+..++.+.+.+..+.. +..+..++...+.++||+||||||||++++++++.++ .+++.++|
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~------~~~~~i~~ 78 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLRE---PSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK------VPFFTISG 78 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHC---GGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT------CCEEEECS
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhC---HHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC------CCEEEEeH
Confidence 34678999999999988876655433 3456677788889999999999999999999999986 66889999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
+.+.....+...+.+..+|+.+....|+++||||+|.+.+.+...... ...........++..++.+... .+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~-------~~ 150 (257)
T 1lv7_A 79 SDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG-GHDEREQTLNQMLVEMDGFEGN-------EG 150 (257)
T ss_dssp CSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCC-TTCHHHHHHHHHHHHHHTCCSS-------SC
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCC-CchHHHHHHHHHHHHhhCcccC-------CC
Confidence 998877777777788999999988889999999999997643322111 1222334555666666654321 25
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
+++|++||.++.+++++.+++||+..++++.|+.++|.+|++.++....+. .+..+..++..++||+++||..+|++|.
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~-~~~~~~~la~~~~G~~~~dl~~l~~~a~ 229 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAA 229 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC-ccccHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999988764432 2334678899999999999999999999
Q ss_pred HHHhcccccCCCccccccccccchhhhHhhhhccc
Q 001162 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (1134)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~ 824 (1134)
..+..+ ....++.+||..|+....
T Consensus 230 ~~a~~~-----------~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 230 LFAARG-----------NKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHT-----------TCSSBCHHHHHHHHHHHT
T ss_pred HHHHHh-----------CCCcccHHHHHHHHHHHh
Confidence 887654 225689999999887653
No 49
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.92 E-value=6e-25 Score=261.43 Aligned_cols=226 Identities=21% Similarity=0.304 Sum_probs=175.6
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHh-ccCCceeeEEEEEe
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSL-EHHKDLVAHIVFVC 628 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l-~~~~~~~~~~~~v~ 628 (1134)
...+.+++|++..++.+.+.+...+. .+.+|.. +..+++++||+||||||||++|+++|+++ + .+++.++
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~--~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~------~~~~~v~ 200 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIK--FPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANN------STFFSIS 200 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHH--CTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCS------SEEEEEC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhh--CHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCC------CCEEEEe
Confidence 34678999999999988887643221 2233432 24567889999999999999999999997 3 6788999
Q ss_pred cccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCC
Q 001162 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1134)
Q Consensus 629 ~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1134)
|+.+...+.+.....++.+|..+....|+||||||+|.+++.+.... ......+.+.|+..++.+... ..
T Consensus 201 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~----~~~~~~~~~~lL~~l~~~~~~------~~ 270 (444)
T 2zan_A 201 SSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE----SEAARRIKTEFLVQMQGVGVD------ND 270 (444)
T ss_dssp CC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCC----CGGGHHHHHHHHTTTTCSSCC------CS
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCcc----ccHHHHHHHHHHHHHhCcccC------CC
Confidence 99988877777777788999999989999999999999986543321 222345666666666554321 13
Q ss_pred cEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHH
Q 001162 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1134)
Q Consensus 709 ~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a 788 (1134)
+++||++||.++.++++++| ||+..+.++.|+.++|.+|++.++...+..+++..+..++..++||+++||..+|++|
T Consensus 271 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a 348 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDA 348 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 59999999999999999999 9999999999999999999999998777777889999999999999999999999999
Q ss_pred HHHHhccc
Q 001162 789 VHAAVGRY 796 (1134)
Q Consensus 789 ~~~a~~r~ 796 (1134)
+..++.+.
T Consensus 349 ~~~a~r~~ 356 (444)
T 2zan_A 349 LMQPVRKV 356 (444)
T ss_dssp HTHHHHHH
T ss_pred HHHHHHHH
Confidence 98887654
No 50
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.92 E-value=8.6e-26 Score=269.92 Aligned_cols=366 Identities=16% Similarity=0.193 Sum_probs=229.0
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~ 631 (1134)
.+.+++|.+..++.+...+..+. .+..+++++||+||||||||++|+++|++++.. .+++.++|+.
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~----------~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~----~~~~~~~~~~ 100 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIK----------SKKMAGRAVLLAGPPGTGKTALALAIAQELGSK----VPFCPMVGSE 100 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHH----------TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT----SCEEEEEGGG
T ss_pred chhhccCHHHHHHHHHHHHHHHH----------hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC----ceEEEEeHHH
Confidence 46789999998887766554332 245567889999999999999999999998643 5788899999
Q ss_pred ccccchhhHHHHHHHHHHHH---hhcCCeEEEEcccchhccCCCCCCCCCCchhHH---------------HHHHHHHHH
Q 001162 632 LSLEKGPIIRQALSNFISEA---LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVI---------------ALTKFLVDI 693 (1134)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a---~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~---------------~l~~~L~~~ 693 (1134)
+...+.+.... +...|..+ ....|+||||||+|.+++.+............. .+...+.+.
T Consensus 101 ~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~ 179 (456)
T 2c9o_A 101 VYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFES 179 (456)
T ss_dssp GCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHH
T ss_pred HHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHH
Confidence 99888888877 89999999 778899999999999997654332111000000 111123333
Q ss_pred HHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccc--cccCCCCC--HHHHHHHHHHHhhhcccCCCHHHHHHH
Q 001162 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDF--HVQLPAPA--ASERKAILEHEIQRRSLECSDEILLDV 769 (1134)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~--~i~l~~P~--~eeR~~IL~~~l~~~~l~~~~~~l~~l 769 (1134)
++...-.. .+.++++++||.++.+++++.+++||+. .+.++.|+ .++|.+|++.+. ...+..+
T Consensus 180 l~~~~~~~-----~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~--------~~dl~~~ 246 (456)
T 2c9o_A 180 LQKERVEA-----GDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVT--------LHDLDVA 246 (456)
T ss_dssp HHHTTCCT-----TEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEE--------HHHHHHT
T ss_pred HhhccCCC-----CCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHH--------HHHHHHH
Confidence 33211111 1236666999999999999999999998 55666664 477888775433 2358889
Q ss_pred hhhcCCCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhccccceeccccccccCCCCCCCCCCCCh
Q 001162 770 ASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGL 849 (1134)
Q Consensus 770 a~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~~~~~~~~~~i~gl 849 (1134)
+..++| ++|+..+|........ ..+.. + + .
T Consensus 247 a~~t~g--gadl~~l~~~i~~p~~---------------~~I~~-~------------------------------l--r 276 (456)
T 2c9o_A 247 NARPQG--GQDILSMMGQLMKPKK---------------TEITD-K------------------------------L--R 276 (456)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred HHhCCC--hhHHHHHHhhhcccch---------------hhHHH-H------------------------------H--H
Confidence 999999 8998888753210000 00000 0 0 0
Q ss_pred hHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcccccHHHHHHH
Q 001162 850 TDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDI 929 (1134)
Q Consensus 850 ~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~G~se~~v~~l 929 (1134)
+.+.+.+.+ .
T Consensus 277 ~~I~~~l~~----------------------------------------------------------------------~ 286 (456)
T 2c9o_A 277 GEINKVVNK----------------------------------------------------------------------Y 286 (456)
T ss_dssp CHHHHHHHH----------------------------------------------------------------------H
T ss_pred HHHHHHHHH----------------------------------------------------------------------H
Confidence 011111111 1
Q ss_pred HHHhhh-cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEe---------cC---CCCccchh
Q 001162 930 FSKATA-AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAA---------TS---RPDLLDAA 996 (1134)
Q Consensus 930 f~~A~~-~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIat---------Tn---~p~~ld~a 996 (1134)
++.+.. ..|.|+||||+|.| ...+.+.|++.|+. +...++|++| |+ .|+.++|.
T Consensus 287 ~~~g~~~v~~~VliIDEa~~l-----------~~~a~~aLlk~lEe--~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~ 353 (456)
T 2c9o_A 287 IDQGIAELVPGVLFVDEVHML-----------DIECFTYLHRALES--SIAPIVIFASNRGNCVIRGTEDITSPHGIPLD 353 (456)
T ss_dssp HHTTSEEEEECEEEEESGGGC-----------BHHHHHHHHHHTTS--TTCCEEEEEECCSEEECBTTSSCEEETTCCHH
T ss_pred HHhccccccceEEEEechhhc-----------CHHHHHHHHHHhhc--cCCCEEEEecCCccccccccccccccccCChh
Confidence 111110 11359999999998 46789999999984 3344666565 33 26678999
Q ss_pred hcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhc-cCCcHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 001162 997 LLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMT-EGFSGADLQALLSDAQLSAVHEILNNIDSNE 1074 (1134)
Q Consensus 997 llrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t-~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~ 1074 (1134)
+++ ||.. +.|++|+.++..+|++..+...+.. ++..+..+++.+ .| +.+....+++.|...|..+
T Consensus 354 i~s--R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~--------- 420 (456)
T 2c9o_A 354 LLD--RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKIN--------- 420 (456)
T ss_dssp HHT--TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHT---------
T ss_pred HHh--hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhc---------
Confidence 999 8877 5999999999999999887644432 333456677777 65 6666667777776665432
Q ss_pred CCCcccccHHHHHHHHhhc
Q 001162 1075 PGKMPVITDALLKSIASKA 1093 (1134)
Q Consensus 1075 ~~~~~~it~e~l~~al~~~ 1093 (1134)
+...||.+|+..++...
T Consensus 421 --~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 421 --GKDSIEKEHVEEISELF 437 (456)
T ss_dssp --TCSSBCHHHHHHHHHHS
T ss_pred --CCCccCHHHHHHHHHHh
Confidence 33579999999998764
No 51
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.92 E-value=4.6e-25 Score=248.29 Aligned_cols=175 Identities=19% Similarity=0.315 Sum_probs=140.5
Q ss_pred CCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcccccHHHHHHHHHHh----hhcCCeEEEEcCccc
Q 001162 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKA----TAAAPCLLFFDEFDS 948 (1134)
Q Consensus 873 ~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~G~se~~v~~lf~~A----~~~~P~VLfiDEid~ 948 (1134)
.+.+++.++|||||||||||++|+++|++++.+|+.++++++.++|+|.++..++.+|+.| +...|+||||||||+
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 3556778999999999999999999999999999999999999999999999999999999 577899999999999
Q ss_pred ccCCCCCCC--CcchhhHHHhHhhhccccc-----------ccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHH
Q 001162 949 IAPKRGHDN--TGVTDRVVNQFLTELDGVE-----------VLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPR 1015 (1134)
Q Consensus 949 l~~~r~~~~--~~~~~rv~~~lL~~ld~~~-----------~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~ 1015 (1134)
++++++... .....++.+.|+..||+.. ...+++||+|||+++.+|++++|||||+..++ .|+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~ 188 (293)
T 3t15_A 111 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 188 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHH
T ss_pred hcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHH
Confidence 998654322 2245577899999988443 45679999999999999999999999999987 46999
Q ss_pred HHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHH
Q 001162 1016 ERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQA 1053 (1134)
Q Consensus 1016 er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~ 1053 (1134)
+|.+|++.++... +++.+.++..++||+|++|..
T Consensus 189 ~r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 189 DRIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 9999999887753 567899999999999998864
No 52
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.91 E-value=1.7e-23 Score=235.65 Aligned_cols=259 Identities=19% Similarity=0.258 Sum_probs=197.3
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
...+.+++|.+..++.+.+.+..... .+.++..++ .++.++||+||||||||++|+++|+.++ .+++.++|
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~--~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~------~~~~~i~~ 87 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSV--RPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECS------ATFLNISA 87 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHH--CGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTT------CEEEEEES
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhh--CHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhC------CCeEEeeH
Confidence 34577899999999998887744221 233444444 4567899999999999999999999986 78899999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
+.+.+...+...+.++.+|..+....|++|||||+|.+...+...... ....+...|+..++....... ...
T Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~----~~~~~~~~ll~~l~~~~~~~~----~~~ 159 (297)
T 3b9p_A 88 ASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHE----ASRRLKTEFLVEFDGLPGNPD----GDR 159 (297)
T ss_dssp TTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----C----CSHHHHHHHHHHHHHCC----------C
T ss_pred HHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcch----HHHHHHHHHHHHHhcccccCC----CCc
Confidence 999888877788888999999988999999999999998644322211 113455566666776543210 125
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
+++|++||.++.+++++++ ||+..+.++.|+.++|..|++.++...+..++++.+..++..++||+++|+..++++|.
T Consensus 160 v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~ 237 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAA 237 (297)
T ss_dssp EEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred EEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 8999999999999999999 99999999999999999999999887777788999999999999999999999999998
Q ss_pred HHHhcccccCC-CccccccccccchhhhHhhhhccccce
Q 001162 790 HAAVGRYLHSD-SSFEKHIKPTLVRDDFSQAMHEFLPVA 827 (1134)
Q Consensus 790 ~~a~~r~~~~~-~~~~~~~~~~lt~eDf~~Al~~~~P~~ 827 (1134)
..+..+..... ..........++.+||..|+....|+.
T Consensus 238 ~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~ 276 (297)
T 3b9p_A 238 LEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSV 276 (297)
T ss_dssp THHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSS
T ss_pred HHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCC
Confidence 88876542110 001111234689999999998876653
No 53
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.91 E-value=1.3e-23 Score=243.32 Aligned_cols=257 Identities=19% Similarity=0.259 Sum_probs=197.9
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s 630 (1134)
..+.+++|.+..++.+.+.+...+. .+.++...+ .++.++||+||||||||++|+++|+.++ ..++.++|+
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~--~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~------~~~~~i~~~ 151 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPML--RPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSG------ATFFSISAS 151 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHH--CTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTT------CEEEEEEGG
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhh--ChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcC------CeEEEEehH
Confidence 4577899999999999887754221 123344443 4567899999999999999999999986 789999999
Q ss_pred cccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcE
Q 001162 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1134)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1134)
.+...+.+.....++.+|..+....|+||||||+|.+.+.+.... ......+...|+..++...... ..++
T Consensus 152 ~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~----~~~~~~~~~~lL~~l~~~~~~~-----~~~v 222 (357)
T 3d8b_A 152 SLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE----HESSRRIKTEFLVQLDGATTSS-----EDRI 222 (357)
T ss_dssp GGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC----------CHHHHHHHHHHHHHHC----C-----CCCE
T ss_pred HhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCc----chHHHHHHHHHHHHHhcccccC-----CCCE
Confidence 999888888888899999999988999999999999986433211 2233455566666666543211 1259
Q ss_pred EEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHH
Q 001162 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 711 ~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~ 790 (1134)
+||++||.++.+++++++ ||...++++.|+.++|.+|++.++...+..++++.+..++..++||+++|+..+|+.|..
T Consensus 223 ~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~ 300 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASL 300 (357)
T ss_dssp EEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred EEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999887778899999999999999999999999999988
Q ss_pred HHhcccccCC-CccccccccccchhhhHhhhhccccce
Q 001162 791 AAVGRYLHSD-SSFEKHIKPTLVRDDFSQAMHEFLPVA 827 (1134)
Q Consensus 791 ~a~~r~~~~~-~~~~~~~~~~lt~eDf~~Al~~~~P~~ 827 (1134)
.++.+..... ..........++.+||..|+..+.|+.
T Consensus 301 ~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~ 338 (357)
T 3d8b_A 301 GPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSV 338 (357)
T ss_dssp HHHHHCCC----------CCCBCHHHHHHHHHHHGGGC
T ss_pred HHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCCCC
Confidence 7776432110 001112235689999999999888753
No 54
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.91 E-value=3.1e-23 Score=242.88 Aligned_cols=257 Identities=17% Similarity=0.235 Sum_probs=193.5
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
...|.+++|.+..++.+.+.+..... .+.++...+ .++.++||+||||||||++|+++|+.++ .+++.++|
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~--~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~------~~~~~v~~ 181 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSL--RPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESN------ATFFNISA 181 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHH--CTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTT------CEEEEECS
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhcc--CHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhc------CcEEEeeH
Confidence 45688999999999999887754321 233444554 3467899999999999999999999987 78999999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
+.+.+.+.+.....+..+|..+....|+||||||+|.++..+.... ......+...|+..++...... ...
T Consensus 182 ~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~----~~~~~~~~~~ll~~l~~~~~~~-----~~~ 252 (389)
T 3vfd_A 182 ASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGE----HDASRRLKTEFLIEFDGVQSAG-----DDR 252 (389)
T ss_dssp CCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC------------CTHHHHHHHHHHHHHHHC----------C
T ss_pred HHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCcc----chHHHHHHHHHHHHhhcccccC-----CCC
Confidence 9999888888888899999999999999999999999986433221 1223456666777777654321 125
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
++||++||.++.+++++++ ||...++++.|+.++|.+|++.++...+..++++.+..++..++||+++++..+++.|.
T Consensus 253 v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~ 330 (389)
T 3vfd_A 253 VLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAA 330 (389)
T ss_dssp EEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred EEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999 99989999999999999999999988888899999999999999999999999999998
Q ss_pred HHHhcccccCCC-ccccccccccchhhhHhhhhccccc
Q 001162 790 HAAVGRYLHSDS-SFEKHIKPTLVRDDFSQAMHEFLPV 826 (1134)
Q Consensus 790 ~~a~~r~~~~~~-~~~~~~~~~lt~eDf~~Al~~~~P~ 826 (1134)
..+..+...... .........++.+||..++....|+
T Consensus 331 ~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~s 368 (389)
T 3vfd_A 331 LGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRS 368 (389)
T ss_dssp THHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCCS
T ss_pred HHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCCC
Confidence 887766432110 1111223568899999988766553
No 55
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.90 E-value=2.3e-23 Score=248.67 Aligned_cols=247 Identities=21% Similarity=0.292 Sum_probs=196.3
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
..+|.+++|.+..+.++.+.+..+.. +..+..++...|.++||+||||||||+|++++|..+. .++++++|
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~---~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~------~~~i~i~g 97 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKN---PSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR------VPFITASG 97 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHC---GGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT------CCEEEEEG
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhc---hhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC------CCEEEEeh
Confidence 45688999999999888876655433 4567788888899999999999999999999999986 67889999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
+.+.....+.....+..+|+.+....|+++||||+|.+...+....+ .........++.++..++..... ..
T Consensus 98 ~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~-~~~~e~~~~l~~LL~~Ldg~~~~-------~~ 169 (499)
T 2dhr_A 98 SDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG-GGNDEREQTLNQLLVEMDGFEKD-------TA 169 (499)
T ss_dssp GGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTT-TSSHHHHHHHHHHHHHGGGCCSS-------CC
T ss_pred hHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcC-CCcHHHHHHHHHHHHHhcccccC-------cc
Confidence 99988777777888999999988788999999999999754332111 12233334555565656554321 24
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCH-HHHHHHhhhcCCCChhhHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSD-EILLDVASKCDGYDAYDLEILVDRT 788 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~-~~l~~la~~teG~s~~DL~~Lv~~a 788 (1134)
++++++||.++.+|++++|++||+..+.|+.|+.++|.+||+.++... .+++ ..+..++..+.||+++||+++|++|
T Consensus 170 viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~--~l~~dv~l~~lA~~t~G~~gadL~~lv~~A 247 (499)
T 2dhr_A 170 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK--PLAEDVDLALLAKRTPGFVGADLENLLNEA 247 (499)
T ss_dssp CEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS--CCCCSSTTHHHHTTSCSCCHHHHHHHHHHH
T ss_pred EEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC--CCChHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999877543 3333 3478899999999999999999999
Q ss_pred HHHHhcccccCCCccccccccccchhhhHhhhhccccc
Q 001162 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1134)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~ 826 (1134)
+..+..+ ....++.+||..|+....+.
T Consensus 248 a~~A~~~-----------~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 248 ALLAARE-----------GRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp HHHHTTT-----------CCSSCCSHHHHHHHHHHTTC
T ss_pred HHHHHHh-----------CCCccCHHHHHHHHHHHhcc
Confidence 8877643 22468999999999877654
No 56
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.90 E-value=1.1e-22 Score=223.96 Aligned_cols=241 Identities=21% Similarity=0.301 Sum_probs=183.0
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
..+|++++|.+..+.++.+....+. .+..+...+...+.|++|+||||||||+|++++++.+. ..++.+++
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~~~---~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~------~~~i~~~~ 82 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEFLK---NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR------VPFITASG 82 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHHHH---CHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT------CCEEEEEH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHH---CHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC------CCEEEeeH
Confidence 3457789999988887776554432 24567777888888999999999999999999999876 56788888
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
..+.....+...+.+..+|+.+....|+++++||+|.+...+....+ ............+...++..... ..
T Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~-~~~~~~~~~~~~ll~~l~g~~~~-------~~ 154 (254)
T 1ixz_A 83 SDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG-GGNDEREQTLNQLLVEMDGFEKD-------TA 154 (254)
T ss_dssp HHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC----------CHHHHHHHHHHHHHHHTCCTT-------CC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcccc-ccchHHHHHHHHHHHHHhCCCCC-------CC
Confidence 87766556666777889999988778999999999998754321111 11223334455555555543321 14
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHH-HHHHHhhhcCCCChhhHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE-ILLDVASKCDGYDAYDLEILVDRT 788 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~-~l~~la~~teG~s~~DL~~Lv~~a 788 (1134)
+++++++|.++.+|+++++++||+..++++.|+.++|.+|++.++... .+.++ .+..++..++||+++||+.+|++|
T Consensus 155 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~--~~~~~~~~~~la~~~~G~~~~dl~~~~~~a 232 (254)
T 1ixz_A 155 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK--PLAEDVDLALLAKRTPGFVGADLENLLNEA 232 (254)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS--CBCTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred EEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC--CCCcccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999877543 33333 478899999999999999999999
Q ss_pred HHHHhcccccCCCccccccccccchhhhHhhh
Q 001162 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAM 820 (1134)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al 820 (1134)
...+..+ ....++.+||.+++
T Consensus 233 ~~~a~~~-----------~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 233 ALLAARE-----------GRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHT-----------TCSSBCHHHHHHHT
T ss_pred HHHHHHh-----------cCCCcCHHHHHHHh
Confidence 8877644 22458899998775
No 57
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.89 E-value=6.7e-25 Score=243.44 Aligned_cols=252 Identities=22% Similarity=0.276 Sum_probs=183.6
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s 630 (1134)
..+.+++|.+..++.+.+.+..+. .+..+..++...+.++||+||||||||++|+++|+.++ .+++.++|+
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~------~~~~~v~~~ 78 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLK---YPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH------VPFFSMGGS 78 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHH---CHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT------CCCCCCCSC
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHH---ChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC------CCEEEechH
Confidence 356789999999998888665433 35567788888899999999999999999999999986 567778888
Q ss_pred cccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcE
Q 001162 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1134)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1134)
.+.....+.....++.+|..+....|+||||||+|.+.+.+..............+...|+..++..... ..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~------~~~v 152 (268)
T 2r62_A 79 SFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE------NAPV 152 (268)
T ss_dssp TTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS------CSCC
T ss_pred HHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC------CCCE
Confidence 8765544444444567788888788999999999999754321100000000001122233333332211 1258
Q ss_pred EEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHH
Q 001162 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 711 ~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~ 790 (1134)
++|++||.++.+++++.+++||+..++++.|+.++|.+|++.++....+. ++..+..++..++||+++|+..++++|..
T Consensus 153 ~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl~~l~~~a~~ 231 (268)
T 2r62_A 153 IVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLANIINEAAL 231 (268)
T ss_dssp EEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHHHHHHHHHHH
T ss_pred EEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988654332 23346789999999999999999999987
Q ss_pred HHhcccccCCCccccccccccchhhhHhhhhccccceec
Q 001162 791 AAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMR 829 (1134)
Q Consensus 791 ~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~lr 829 (1134)
.+..+ ....++.+||..++....|...+
T Consensus 232 ~a~~~-----------~~~~i~~~~~~~a~~~~~~~~~~ 259 (268)
T 2r62_A 232 LAGRN-----------NQKEVRQQHLKEAVERGIAGLEK 259 (268)
T ss_dssp TTSSS-----------CCCSCCHHHHHTSCTTCCCCCC-
T ss_pred HHHHh-----------ccCCcCHHHHHHHHHHHhhcchh
Confidence 66433 22468999999998887776443
No 58
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.88 E-value=9.1e-22 Score=219.72 Aligned_cols=241 Identities=21% Similarity=0.301 Sum_probs=181.6
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
..++++++|.+..+.++.+....+. ....+...+...+.+++|+||||||||+|+++++..+. ..++.+++
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~---~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~------~~~i~~~~ 106 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLK---NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR------VPFITASG 106 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHH---CHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT------CCEEEEEH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHH---CHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC------CCEEEecH
Confidence 4567899999988888776554432 23456777888888899999999999999999999876 56788888
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
..+.....+...+.+..+|+.+....|+++++||+|.+...+....+ ............+...++..... ..
T Consensus 107 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~-~~~~~~~~~~~~ll~~lsgg~~~-------~~ 178 (278)
T 1iy2_A 107 SDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG-GGNDEREQTLNQLLVEMDGFEKD-------TA 178 (278)
T ss_dssp HHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC---------CHHHHHHHHHHHHHHTTCCTT-------CC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccC-CcchHHHHHHHHHHHHHhCCCCC-------CC
Confidence 87766556666677888999988778999999999998753321111 11222233444444444433211 24
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHH-HHHHHhhhcCCCChhhHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE-ILLDVASKCDGYDAYDLEILVDRT 788 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~-~l~~la~~teG~s~~DL~~Lv~~a 788 (1134)
+++++++|.++.+|+++.+++||+..++++.|+.++|.+|++.++... .++++ .+..++..++||+++||+.+|++|
T Consensus 179 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~--~~~~~~~~~~la~~~~G~~~~dl~~l~~~a 256 (278)
T 1iy2_A 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK--PLAEDVDLALLAKRTPGFVGADLENLLNEA 256 (278)
T ss_dssp EEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS--CBCTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred EEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC--CCCcccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999887643 33333 478899999999999999999999
Q ss_pred HHHHhcccccCCCccccccccccchhhhHhhh
Q 001162 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAM 820 (1134)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al 820 (1134)
...+..+ ....++.+||.+|+
T Consensus 257 ~~~a~~~-----------~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 257 ALLAARE-----------GRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHT-----------TCCSBCHHHHHHHT
T ss_pred HHHHHHh-----------CCCCcCHHHHHHHh
Confidence 8877643 22458899998775
No 59
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.87 E-value=5e-24 Score=254.63 Aligned_cols=200 Identities=20% Similarity=0.296 Sum_probs=144.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcC--CcEEEEeCcccchh
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPELLNK 917 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~--~~~i~i~~~el~~~ 917 (1134)
...|++++|++++++.+...+... ..+..++.++||+||||||||++|+++|++++ .+|+.++++++.++
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104 (456)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred hhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence 356899999999999998877532 23445678999999999999999999999999 99999999999999
Q ss_pred cccccHHHHHHHHHHh---hhcCCeEEEEcCcccccCCCCCCCCc----chhhH---------------HHhHhhhcc--
Q 001162 918 YIGASEQAVRDIFSKA---TAAAPCLLFFDEFDSIAPKRGHDNTG----VTDRV---------------VNQFLTELD-- 973 (1134)
Q Consensus 918 ~~G~se~~v~~lf~~A---~~~~P~VLfiDEid~l~~~r~~~~~~----~~~rv---------------~~~lL~~ld-- 973 (1134)
|.|+++. ++++|+.| +...|+||||||+|+++++|+....+ ...++ .++++..|+
T Consensus 105 ~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~ 183 (456)
T 2c9o_A 105 EIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKE 183 (456)
T ss_dssp SSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHT
T ss_pred hhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhc
Confidence 9999998 99999999 78889999999999999988654221 11222 223443443
Q ss_pred cccccccEEEEEecCCCCccchhhcCcCcccc--eeecCCCC--HHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHH
Q 001162 974 GVEVLTGVFVFAATSRPDLLDAALLRPGRLDR--LLFCDFPS--PRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGA 1049 (1134)
Q Consensus 974 ~~~~~~~v~vIatTn~p~~ld~allrpgRfd~--~i~~~~p~--~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~ 1049 (1134)
++...+.++|++|||+++.+|++++|+||||+ .+++|.|+ .++|.+|++.+.. .|++.++..++| |+
T Consensus 184 ~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--ga 254 (456)
T 2c9o_A 184 RVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--GQ 254 (456)
T ss_dssp TCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC---------
T ss_pred cCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--hh
Confidence 33455668888999999999999999999999 66777775 4778777765443 268889999999 99
Q ss_pred HHHHHHHH
Q 001162 1050 DLQALLSD 1057 (1134)
Q Consensus 1050 dl~~l~~~ 1057 (1134)
|+.++|..
T Consensus 255 dl~~l~~~ 262 (456)
T 2c9o_A 255 DILSMMGQ 262 (456)
T ss_dssp --------
T ss_pred HHHHHHhh
Confidence 99999854
No 60
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.84 E-value=7.1e-21 Score=215.34 Aligned_cols=214 Identities=16% Similarity=0.215 Sum_probs=169.7
Q ss_pred CCCChhHHHHHHHHHHhcCCCchhHHhhCCC---CCCCceEEEcCCCCchhHHHHHHHHHc-------CCcEEEEeCccc
Q 001162 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPL---RLRSNVLLYGPPGCGKTHIVGAAAAAC-------SLRFISVKGPEL 914 (1134)
Q Consensus 845 ~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~---~~~~~vLL~GppGtGKT~lA~alA~~~-------~~~~i~i~~~el 914 (1134)
+++|++++++.+.+.+..+. .+..+...++ .+..++||+||||||||++|+++|+.+ ..+++.++++++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 69999999999999887643 3444444443 344579999999999999999999988 348999999999
Q ss_pred chhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCc--
Q 001162 915 LNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL-- 992 (1134)
Q Consensus 915 ~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~-- 992 (1134)
.+.|.|.++..++.+|..+. ++||||||+|.++..++. ......+++.|+..|+. ...+++||++||.++.
T Consensus 111 ~~~~~g~~~~~~~~~~~~~~---~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~--~~~~~~~i~~~~~~~~~~ 183 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMEN--NRDDLVVILAGYADRMEN 183 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHHT---TSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHH--CTTTCEEEEEECHHHHHH
T ss_pred hhhcccccHHHHHHHHHhcC---CCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhc--CCCCEEEEEeCChHHHHH
Confidence 99999999999999998873 569999999999865432 34467888999999973 3456888888887542
Q ss_pred ---cchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHh-------ccCCcHHHHHHHHHHHHHH
Q 001162 993 ---LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHM-------TEGFSGADLQALLSDAQLS 1061 (1134)
Q Consensus 993 ---ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~-------t~g~sg~dl~~l~~~A~~~ 1061 (1134)
++|++++ ||+..++|++|+.+++..|++.++++.++. .+..+..++.. ...-+++++.+++..|...
T Consensus 184 ~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~ 261 (309)
T 3syl_A 184 FFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLR 261 (309)
T ss_dssp HHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHH
Confidence 5799999 999999999999999999999999876643 22234555554 2223489999999999998
Q ss_pred HHHHHHh
Q 001162 1062 AVHEILN 1068 (1134)
Q Consensus 1062 a~~~~~~ 1068 (1134)
+..+.+.
T Consensus 262 ~~~r~~~ 268 (309)
T 3syl_A 262 QANRLFT 268 (309)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8888765
No 61
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.83 E-value=5.8e-21 Score=252.10 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=115.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCc----------hhHHhh------CCCC----------CCCc--eEEEcCCCCc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKF----------PNIFAQ------APLR----------LRSN--VLLYGPPGCG 890 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~----------~~~~~~------~~~~----------~~~~--vLL~GppGtG 890 (1134)
..+.|++++|++++|+.+.+.+++++.+ ++.|.. .|.. +++| +|+|||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 4589999999999999999999998844 445554 2222 3344 9999999999
Q ss_pred hhHHHHHHHHHc---CCcEEEEeCcccc------------hhcccc----cHHHHHHHHHHhhhcCCeEEEEcCcccccC
Q 001162 891 KTHIVGAAAAAC---SLRFISVKGPELL------------NKYIGA----SEQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1134)
Q Consensus 891 KT~lA~alA~~~---~~~~i~i~~~el~------------~~~~G~----se~~v~~lf~~A~~~~P~VLfiDEid~l~~ 951 (1134)
||++|+++|.+. |.+.+.|+..+.+ ++|+++ +|+.++.+|..|+...||+||+||+++|+|
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999999877 5666667666644 677788 899999999999999999999999999999
Q ss_pred CC---CCC---CCcchhhHHHhHhhhcccccccccEEEEEecCCC
Q 001162 952 KR---GHD---NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP 990 (1134)
Q Consensus 952 ~r---~~~---~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p 990 (1134)
.+ |.. +.+...|+++++|++|++.....+|+|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 83 221 2367789999999999999888999888 66663
No 62
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.82 E-value=1.8e-20 Score=210.85 Aligned_cols=184 Identities=13% Similarity=0.180 Sum_probs=132.4
Q ss_pred cCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHH----hhcCCeEEE
Q 001162 585 YHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEA----LDHAPSIVI 660 (1134)
Q Consensus 585 ~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a----~~~~PsIL~ 660 (1134)
.+..+|.++|||||||||||++|+++|++++ .++++++|+.+...+.+...+.+...|..+ ....|+|||
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~------~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~ 104 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMG------INPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLF 104 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHT------CCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEE
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhC------CCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 4577889999999999999999999999997 789999999999888888888899999888 577899999
Q ss_pred EcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc----cccccCCCcEEEEEecCCCCCCChhhccCCCccccc
Q 001162 661 FDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK----RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHV 736 (1134)
Q Consensus 661 IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~----~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i 736 (1134)
|||+|.+++..... .+.......+...|+.++|..... ........++++|+|||.++.++++++|++||+..+
T Consensus 105 iDEiD~~~~~~~~~--~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i 182 (293)
T 3t15_A 105 INDLDAGAGRMGGT--TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFY 182 (293)
T ss_dssp EECCC----------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEE
T ss_pred EechhhhcCCCCCC--ccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeE
Confidence 99999998632211 111112335667777887733200 000111236899999999999999999999999888
Q ss_pred cCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHH
Q 001162 737 QLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEI 783 (1134)
Q Consensus 737 ~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~ 783 (1134)
.+ |+.++|.+|++.++...++. ...++..++||+++++..
T Consensus 183 ~~--P~~~~r~~Il~~~~~~~~~~-----~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 183 WA--PTREDRIGVCTGIFRTDNVP-----AEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp EC--CCHHHHHHHHHHHHGGGCCC-----HHHHHHHHHHSCSCCHHH
T ss_pred eC--cCHHHHHHHHHHhccCCCCC-----HHHHHHHhCCCCcccHHH
Confidence 74 69999999999888765443 556777888999998864
No 63
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.81 E-value=4.1e-19 Score=207.93 Aligned_cols=377 Identities=16% Similarity=0.153 Sum_probs=178.1
Q ss_pred ccccchhhHHHHHHHHHHhcCCCchhhhhhcCC-CCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccc
Q 001162 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHL-PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (1134)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~-~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~ 633 (1134)
.++|.+.++..+...+..... ...++..++. .+++++||+||||||||++|+++|+.++ .+++.++|+.+.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~--r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~------~~~~~v~~~~~~ 87 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWR--RMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN------APFIKVEATKFT 87 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHH--HHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT------CCEEEEEGGGGC
T ss_pred HhCCHHHHHHHHHHHHHHHHh--hhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC------CCceeecchhhc
Confidence 567888888877666533211 1112222222 3567899999999999999999999997 788889998887
Q ss_pred c-cchh-hHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEE
Q 001162 634 L-EKGP-IIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIA 711 (1134)
Q Consensus 634 ~-~~~~-~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~ 711 (1134)
. .+.+ .....++.+|..+... +++||++.+... ..+ .....+...|+..||.+.... .+
T Consensus 88 ~~g~vG~d~e~~lr~lf~~a~~~----~~~De~d~~~~~---~~~----~~e~rvl~~LL~~~dg~~~~~-------~v- 148 (444)
T 1g41_A 88 EVGYVGKEVDSIIRDLTDSAMKL----VRQQEIAKNRAR---AED----VAEERILDALLPPAKNQWGEV-------EN- 148 (444)
T ss_dssp ----CCCCTHHHHHHHHHHHHHH----HHHHHHHSCC-------------------------------------------
T ss_pred ccceeeccHHHHHHHHHHHHHhc----chhhhhhhhhcc---chh----hHHHHHHHHHHHHhhcccccc-------cc-
Confidence 6 3555 4778888898887654 458888876421 111 122477888888888765321 22
Q ss_pred EEEe-cCCCCCCChhhccCCCccccccCCCCCHH-HHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 712 FVAS-AQSLEKIPQSLTSSGRFDFHVQLPAPAAS-ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 712 vIat-tn~~~~Ld~aL~~~gRF~~~i~l~~P~~e-eR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
+++ ||.++.++++|++++||++.|+++.|+.. .|.+|+.. .++. . .+.++..++....
T Consensus 149 -~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~----~g~~-------~--------~~~~~~~~~~~~~ 208 (444)
T 1g41_A 149 -HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAP----PGME-------E--------MTNQLQSLFQNLG 208 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhcC----CChH-------H--------HHHHHHHHHHhhc
Confidence 444 99999999999999999999999999987 78887653 1110 0 0111111111100
Q ss_pred HHHhcccccCCCccccccccccchhhhHhhhhccccceeccccccccCCCCCCCCCCCChhHHHHHHHHHHhcCCCchhH
Q 001162 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNI 869 (1134)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~~~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~ 869 (1134)
- . ......++..+ +++.|.
T Consensus 209 ~----~---------~~~~~~~~v~~------------------------------------a~~~l~------------ 227 (444)
T 1g41_A 209 S----D---------KTKKRKMKIKD------------------------------------ALKALI------------ 227 (444)
T ss_dssp ------------------------------------------------------------------CC------------
T ss_pred C----C---------CCcceeeeHHH------------------------------------HHHHHH------------
Confidence 0 0 00000011100 000000
Q ss_pred HhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccc
Q 001162 870 FAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSI 949 (1134)
Q Consensus 870 ~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l 949 (1134)
.+-..+.+ ..+...++.+++|..+ .|+|+||||++
T Consensus 228 ------------------------------------------~~e~~~l~-~~~~~~~~ai~~ae~~--~il~~DEidki 262 (444)
T 1g41_A 228 ------------------------------------------DDEAAKLI-NPEELKQKAIDAVEQN--GIVFIDEIDKI 262 (444)
T ss_dssp ------------------------------------------GGGSCSSC-CHHHHHHHHHHHHHHH--CEEEEETGGGG
T ss_pred ------------------------------------------HHHHHHcc-CHHHHHHHHHHHhccC--CeeeHHHHHHH
Confidence 00001111 2345566677777444 39999999999
Q ss_pred cCCCCCCCCcchh-hHHHhHhhhccccc--------ccccEEEEEec----CCCCccchhhcCcCcccceeecCCCCHHH
Q 001162 950 APKRGHDNTGVTD-RVVNQFLTELDGVE--------VLTGVFVFAAT----SRPDLLDAALLRPGRLDRLLFCDFPSPRE 1016 (1134)
Q Consensus 950 ~~~r~~~~~~~~~-rv~~~lL~~ld~~~--------~~~~v~vIatT----n~p~~ld~allrpgRfd~~i~~~~p~~~e 1016 (1134)
+.+.+.....+.. .+.+.||..||+.. ..++++||+|. +.|..+.|.|+. ||+.++.|+.++.++
T Consensus 263 ~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~--R~~i~i~l~~lt~~e 340 (444)
T 1g41_A 263 CKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAAD 340 (444)
T ss_dssp SCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHT--TCCEEEECCCCCHHH
T ss_pred hhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhc--ccceeeeCCCCCHHH
Confidence 8654322222222 36788999998742 45679999887 345445588887 999999999999999
Q ss_pred HHHHHH---H-H-------HccCCCC---CcccHHHHHHh-------ccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 001162 1017 RLDILK---V-I-------SRKLPLA---DDVDLEAIAHM-------TEGFSGADLQALLSDAQLSAVHEILNNIDSNEP 1075 (1134)
Q Consensus 1017 r~~Il~---~-~-------~~~~~~~---~~vd~~~La~~-------t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 1075 (1134)
..+|+. . + +...+.. .+-.+..|++. +....++-|+.++......+..+.... .
T Consensus 341 ~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~~-----~ 415 (444)
T 1g41_A 341 FERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDM-----N 415 (444)
T ss_dssp HHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGGC-----T
T ss_pred HHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhcccc-----C
Confidence 999994 1 1 1111221 22235555553 355667787777777666655443321 1
Q ss_pred CCcccccHHHHHHHHh
Q 001162 1076 GKMPVITDALLKSIAS 1091 (1134)
Q Consensus 1076 ~~~~~it~e~l~~al~ 1091 (1134)
.....||.+++...+.
T Consensus 416 ~~~~~i~~~~v~~~l~ 431 (444)
T 1g41_A 416 GQTVNIDAAYVADALG 431 (444)
T ss_dssp TCEEEECHHHHHHHHT
T ss_pred CCeEEEeHHHHHHhcC
Confidence 2456799999998774
No 64
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.79 E-value=5.6e-19 Score=199.73 Aligned_cols=220 Identities=15% Similarity=0.164 Sum_probs=165.5
Q ss_pred ccccchhhHHHHHHHHHHhcCCCchhhhhhcCC---CCCceEEEEcCCCccHHHHHHHHHHHhccCCc-eeeEEEEEecc
Q 001162 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHL---PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD-LVAHIVFVCCS 630 (1134)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~---~~p~~vLL~GppGtGKTtLaralA~~l~~~~~-~~~~~~~v~~s 630 (1134)
+++|++..++.+.+.+..... ...+..+|+ .++.++||+||||||||++|+++|+.+..... ...++++++|+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~---~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV---ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH---HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HccChHHHHHHHHHHHHHHHh---HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 588999999988887755431 223333333 33456999999999999999999999864321 12478899999
Q ss_pred cccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcE
Q 001162 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1134)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1134)
.+.+...+.....+..+|..+ .++||||||+|.+++.+.+. .. .......|...++.... ++
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~--~~----~~~~~~~Ll~~l~~~~~---------~~ 170 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNER--DY----GQEAIEILLQVMENNRD---------DL 170 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CC----THHHHHHHHHHHHHCTT---------TC
T ss_pred HhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcc--cc----cHHHHHHHHHHHhcCCC---------CE
Confidence 998888887777788888776 46799999999997432211 11 12556667777775321 47
Q ss_pred EEEEecCCCC-----CCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhh-------cCCCCh
Q 001162 711 AFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK-------CDGYDA 778 (1134)
Q Consensus 711 ~vIattn~~~-----~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~-------teG~s~ 778 (1134)
.+|++++..+ .++++|++ ||+.+++|++|+.+++.+|++.++...+..++++.+..++.. ....++
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~ 248 (309)
T 3syl_A 171 VVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANA 248 (309)
T ss_dssp EEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHH
T ss_pred EEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcH
Confidence 8888887643 25789999 999999999999999999999999988888999988888776 333468
Q ss_pred hhHHHHHHHHHHHHhcccc
Q 001162 779 YDLEILVDRTVHAAVGRYL 797 (1134)
Q Consensus 779 ~DL~~Lv~~a~~~a~~r~~ 797 (1134)
+++..++++++..+..+..
T Consensus 249 r~l~~~l~~a~~~~~~r~~ 267 (309)
T 3syl_A 249 RSIRNALDRARLRQANRLF 267 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999987777654
No 65
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.78 E-value=1.7e-18 Score=200.68 Aligned_cols=218 Identities=20% Similarity=0.232 Sum_probs=161.1
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC--cEEEEeCcccchhc
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--RFISVKGPELLNKY 918 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~--~~i~i~~~el~~~~ 918 (1134)
..|++++|.+.+++.+....... ..+..++.++||+||||||||++|+++|+.++. +|+.+++.++...+
T Consensus 41 ~~~~~ivG~~~~~~~l~~l~~~~--------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 112 (368)
T 3uk6_A 41 QASQGMVGQLAARRAAGVVLEMI--------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLE 112 (368)
T ss_dssp SEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSS
T ss_pred cchhhccChHHHHHHHHHHHHHH--------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcc
Confidence 44899999999998876655421 123344578999999999999999999999974 88999887754433
Q ss_pred c-------------------------------------------------cccHHHHHHHHHHhhh-----c----CCeE
Q 001162 919 I-------------------------------------------------GASEQAVRDIFSKATA-----A----APCL 940 (1134)
Q Consensus 919 ~-------------------------------------------------G~se~~v~~lf~~A~~-----~----~P~V 940 (1134)
. |.....++..|..+.. + .|+|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~v 192 (368)
T 3uk6_A 113 MSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGV 192 (368)
T ss_dssp SCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCE
T ss_pred cchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCce
Confidence 2 2224455666655432 1 2689
Q ss_pred EEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEec-----------CCCCccchhhcCcCcccceeec
Q 001162 941 LFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT-----------SRPDLLDAALLRPGRLDRLLFC 1009 (1134)
Q Consensus 941 LfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatT-----------n~p~~ld~allrpgRfd~~i~~ 1009 (1134)
|||||+|.+. ....+.|+..++. ....++++++. |.++.+++++++ ||.. +.|
T Consensus 193 l~IDEi~~l~-----------~~~~~~L~~~le~--~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~ 256 (368)
T 3uk6_A 193 LFIDEVHMLD-----------IESFSFLNRALES--DMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VST 256 (368)
T ss_dssp EEEESGGGSB-----------HHHHHHHHHHTTC--TTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEE
T ss_pred EEEhhccccC-----------hHHHHHHHHHhhC--cCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEe
Confidence 9999999983 4577788877763 23345555554 347779999999 8876 799
Q ss_pred CCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHH
Q 001162 1010 DFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKS 1088 (1134)
Q Consensus 1010 ~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~ 1088 (1134)
++|+.+++..|++..+...+.. ++..++.+++.+.+.+.+++.++|..|...|..+ +...||.+|+..
T Consensus 257 ~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~-----------~~~~It~~~v~~ 325 (368)
T 3uk6_A 257 TPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR-----------KGTEVQVDDIKR 325 (368)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT-----------TCSSBCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-----------CCCCCCHHHHHH
Confidence 9999999999999988765543 3344778888888678899999999988877543 335799999999
Q ss_pred HHhhc
Q 001162 1089 IASKA 1093 (1134)
Q Consensus 1089 al~~~ 1093 (1134)
++...
T Consensus 326 a~~~~ 330 (368)
T 3uk6_A 326 VYSLF 330 (368)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 99863
No 66
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.76 E-value=7.7e-19 Score=213.66 Aligned_cols=231 Identities=19% Similarity=0.225 Sum_probs=154.4
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccch-----
Q 001162 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN----- 916 (1134)
Q Consensus 842 ~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~----- 916 (1134)
.++++.|++++++.+.+.+....... . .++.+++|+||||||||++|+++|..++.++..+++..+..
T Consensus 79 l~~di~G~~~vk~~i~~~~~l~~~~~------~-~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 79 LDEEHHGLEKVKERILEYLAVQKLTK------S-LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHHHHSS------S-CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhcc------c-CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhh
Confidence 34568999999999987765321111 1 14568999999999999999999999999999999877543
Q ss_pred ----hcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccc-------------cc
Q 001162 917 ----KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV-------------LT 979 (1134)
Q Consensus 917 ----~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~-------------~~ 979 (1134)
.|+|.....+...|..|....| ||||||+|.+.+.+.. ...+.|+..||.... ..
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~-------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~ 223 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG-------DPSSAMLEVLDPEQNSSFSDHYIEETFDLS 223 (543)
T ss_dssp ------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCBCS
T ss_pred hHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc-------CHHHHHHHHHhhhhcceeecccCCeeeccc
Confidence 6788888888889998877766 9999999999765422 244567777764321 25
Q ss_pred cEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHH-----ccCCCC---CcccH---HHHHHhccC-Cc
Q 001162 980 GVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVIS-----RKLPLA---DDVDL---EAIAHMTEG-FS 1047 (1134)
Q Consensus 980 ~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~-----~~~~~~---~~vd~---~~La~~t~g-~s 1047 (1134)
+++||+|||+++.++++|++ ||+ +|.|+.|+.+++..|++.++ +..++. -.++. ..++....+ ..
T Consensus 224 ~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~ 300 (543)
T 3m6a_A 224 KVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAG 300 (543)
T ss_dssp SCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSS
T ss_pred ceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhc
Confidence 68999999999999999999 995 78999999999999998865 233332 12333 333432222 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhcCC
Q 001162 1048 GADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARP 1095 (1134)
Q Consensus 1048 g~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~~p 1095 (1134)
.++|++.+..+...+..+.+.. ......||.+++.+++...+.
T Consensus 301 vR~L~~~i~~~~~~aa~~~~~~-----~~~~~~It~~~l~~~Lg~~~~ 343 (543)
T 3m6a_A 301 VRSLERQLAAICRKAAKAIVAE-----ERKRITVTEKNLQDFIGKRIF 343 (543)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTT-----CCSCCEECTTTTHHHHCSCCS
T ss_pred hhHHHHHHHHHHHHHHHHHHhc-----CCcceecCHHHHHHHhCCccc
Confidence 4666666555555555554432 124467999999999865443
No 67
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.76 E-value=2e-19 Score=210.63 Aligned_cols=169 Identities=17% Similarity=0.215 Sum_probs=83.2
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchhHHhhCCC-CCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccch-hcccc
Q 001162 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPL-RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIGA 921 (1134)
Q Consensus 844 ~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~-~~~G~ 921 (1134)
++|+|++++|+.+...+..+.++..++..... .++.++||+||||||||++|+++|+.++.+|+.++++.+.+ +|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 36899999999999998776555544443322 24678999999999999999999999999999999999988 59995
Q ss_pred -cHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEe-cCCCCccchhhcC
Q 001162 922 -SEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAA-TSRPDLLDAALLR 999 (1134)
Q Consensus 922 -se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIat-Tn~p~~ld~allr 999 (1134)
.+..++.+|..|... +++||++.+.. .......++++++|+.+||++.....+ +++ ||+|+.||++|+|
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~---~~~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~r 165 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRA---RAEDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLRE 165 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhc---cchhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHc
Confidence 799999999998765 35899887643 344566789999999999998766655 444 9999999999999
Q ss_pred cCcccceeecCCCCHH-HHHHHH
Q 001162 1000 PGRLDRLLFCDFPSPR-ERLDIL 1021 (1134)
Q Consensus 1000 pgRfd~~i~~~~p~~~-er~~Il 1021 (1134)
|||||+.|+++.|+.. .|.+|+
T Consensus 166 ggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 166 GQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -----------------------
T ss_pred CCCcceEEEEcCCCCccchhhhh
Confidence 9999999999999987 788876
No 68
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.76 E-value=3.1e-18 Score=193.21 Aligned_cols=242 Identities=19% Similarity=0.249 Sum_probs=166.7
Q ss_pred CCCChhHHHHHHHHHHhcCCCchhHHhh-CCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccch-hccccc
Q 001162 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQ-APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIGAS 922 (1134)
Q Consensus 845 ~i~gl~~~k~~l~~~i~~~~~~~~~~~~-~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~-~~~G~s 922 (1134)
+++|++++++.+...+..+.....+... .+...+.++||+||||||||++|+++|+.++.+++.++++++.. .|+|..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 5889999999998877642111110000 00124568999999999999999999999999999999999876 677654
Q ss_pred -HHHHHHHHHHh-----hhcCCeEEEEcCcccccCCCCCCCCcch-hhHHHhHhhhccccc--------ccccEEEEEe-
Q 001162 923 -EQAVRDIFSKA-----TAAAPCLLFFDEFDSIAPKRGHDNTGVT-DRVVNQFLTELDGVE--------VLTGVFVFAA- 986 (1134)
Q Consensus 923 -e~~v~~lf~~A-----~~~~P~VLfiDEid~l~~~r~~~~~~~~-~rv~~~lL~~ld~~~--------~~~~v~vIat- 986 (1134)
+..+++++..+ ....++||||||+|.+.+.......... ..+.+.|+..|++.. ...+++||++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~ 175 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASG 175 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcC
Confidence 45577777643 1123579999999999876543322222 235678888887532 2346788888
Q ss_pred ---cCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHH----H-------HccCCCC---CcccHHHHHHhcc-----
Q 001162 987 ---TSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKV----I-------SRKLPLA---DDVDLEAIAHMTE----- 1044 (1134)
Q Consensus 987 ---Tn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~----~-------~~~~~~~---~~vd~~~La~~t~----- 1044 (1134)
++.+..+++++++ ||+..+.|++|+.+++.+|++. + ++..+.. ++..++.|++.+.
T Consensus 176 ~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 253 (310)
T 1ofh_A 176 AFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEK 253 (310)
T ss_dssp CCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHH
T ss_pred CcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccc
Confidence 4577889999998 9998899999999999999983 1 1122221 2333566666652
Q ss_pred --CCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhc
Q 001162 1045 --GFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 1093 (1134)
Q Consensus 1045 --g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~ 1093 (1134)
+.+.+.+.+++..+...+.-+... .......||.+|+..+++..
T Consensus 254 ~~~g~~R~l~~~l~~~~~~~~~~~~~-----~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 254 TENIGARRLHTVMERLMDKISFSASD-----MNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp SCCCTTHHHHHHHHHHSHHHHHHGGG-----CTTCEEEECHHHHHHHTCSS
T ss_pred ccccCcHHHHHHHHHHHHhhhcCCcc-----ccCCEEEEeeHHHHHHHHhh
Confidence 467888888888776655433221 11233469999999999764
No 69
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.74 E-value=6.9e-17 Score=185.11 Aligned_cols=216 Identities=19% Similarity=0.219 Sum_probs=160.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
.+..|++++|.+.+++.+...+..... .-.+..++||+||||||||++|+++|+.++.+|+.++++.+.
T Consensus 24 ~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~--- 92 (338)
T 3pfi_A 24 RPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE--- 92 (338)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC---
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc---
Confidence 346899999999999999888764311 113445899999999999999999999999999999997652
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc----------------ccccEE
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE----------------VLTGVF 982 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~----------------~~~~v~ 982 (1134)
....+..++... ..+++|||||||.+. ....+.|+..|+... ...+++
T Consensus 93 ---~~~~~~~~~~~~--~~~~vl~lDEi~~l~-----------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 93 ---KSGDLAAILTNL--SEGDILFIDEIHRLS-----------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp ---SHHHHHHHHHTC--CTTCEEEEETGGGCC-----------HHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred ---chhHHHHHHHhc--cCCCEEEEechhhcC-----------HHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 233445555442 456799999999983 345666666665322 012489
Q ss_pred EEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHH
Q 001162 983 VFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLS 1061 (1134)
Q Consensus 983 vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~ 1061 (1134)
+|++||+...+++++++ ||+..+.|++|+.+++..|++..++..++. .+..++.++..+.| +.+++.+++..+...
T Consensus 157 ~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~ 233 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDF 233 (338)
T ss_dssp EEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHH
T ss_pred EEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999999998876643 33346667775554 457777777766544
Q ss_pred HHHHHHhccCCCCCCCcccccHHHHHHHHhhcCC
Q 001162 1062 AVHEILNNIDSNEPGKMPVITDALLKSIASKARP 1095 (1134)
Q Consensus 1062 a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~~p 1095 (1134)
|... ....|+.+++..++.....
T Consensus 234 a~~~-----------~~~~i~~~~~~~~~~~~~~ 256 (338)
T 3pfi_A 234 ADVN-----------DEEIITEKRANEALNSLGV 256 (338)
T ss_dssp HHHT-----------TCSEECHHHHHHHHHHHTC
T ss_pred HHhh-----------cCCccCHHHHHHHHHHhCC
Confidence 4321 2346899999988876544
No 70
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.72 E-value=8.9e-18 Score=194.72 Aligned_cols=239 Identities=20% Similarity=0.268 Sum_probs=163.5
Q ss_pred CCChhHHHHHHHHHHhcCCCchhHHh--hCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccch-hccccc
Q 001162 846 VGGLTDIQNAIKEMIELPSKFPNIFA--QAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIGAS 922 (1134)
Q Consensus 846 i~gl~~~k~~l~~~i~~~~~~~~~~~--~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~-~~~G~s 922 (1134)
|+|++.+++.+...+........... .....++.++||+||||||||++|+++|+.++.+|+.++++++.. .|.|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 68999999999888753221111000 011125678999999999999999999999999999999999875 488876
Q ss_pred -HHHHHHHHHHh----hhcCCeEEEEcCcccccCCCCCCCCc---chhhHHHhHhhhccccc------------------
Q 001162 923 -EQAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVE------------------ 976 (1134)
Q Consensus 923 -e~~v~~lf~~A----~~~~P~VLfiDEid~l~~~r~~~~~~---~~~rv~~~lL~~ld~~~------------------ 976 (1134)
+..++.+|..+ ....++||||||+|++.+.+.....+ ...++.+.|+..|++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 66778888876 44567899999999998876543322 22348999999998431
Q ss_pred -ccccEEEEEecCCC----------C------------------------------c-----cchhhcCcCcccceeecC
Q 001162 977 -VLTGVFVFAATSRP----------D------------------------------L-----LDAALLRPGRLDRLLFCD 1010 (1134)
Q Consensus 977 -~~~~v~vIatTn~p----------~------------------------------~-----ld~allrpgRfd~~i~~~ 1010 (1134)
...++++|++++.. . . ++|+|+. ||+.++.|+
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~ 254 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLN 254 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecC
Confidence 12334455555432 0 1 5778887 999999999
Q ss_pred CCCHHHHHHHHHH----HHc-------cCCCC---CcccHHHHHH--hccCCcHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 001162 1011 FPSPRERLDILKV----ISR-------KLPLA---DDVDLEAIAH--MTEGFSGADLQALLSDAQLSAVHEILNNIDSNE 1074 (1134)
Q Consensus 1011 ~p~~~er~~Il~~----~~~-------~~~~~---~~vd~~~La~--~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~ 1074 (1134)
+|+.+++.+|++. +++ ..+.. .+..++.|+. ....+.+++|++++..+...++.+... .+
T Consensus 255 pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~----~~ 330 (363)
T 3hws_A 255 ELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPS----ME 330 (363)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTT----CC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhccc----cc
Confidence 9999999999986 222 11222 2223555654 334566789999998888777654321 11
Q ss_pred CCCcccccHHHHHHHH
Q 001162 1075 PGKMPVITDALLKSIA 1090 (1134)
Q Consensus 1075 ~~~~~~it~e~l~~al 1090 (1134)
......|+.+++.+.+
T Consensus 331 ~~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 331 DVEKVVIDESVIDGQS 346 (363)
T ss_dssp CSEEEECHHHHTTCCS
T ss_pred CCceeEEcHHHHhCcC
Confidence 1234578988888655
No 71
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.71 E-value=1.5e-16 Score=181.01 Aligned_cols=235 Identities=18% Similarity=0.245 Sum_probs=165.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
.+..|++++|.+..++.+...+.... .. .....++||+||||||||++|+++++.++.+|+.++++.+..
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~-------~~-~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~-- 76 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAK-------AR-KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK-- 76 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHH-------HH-CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS--
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHH-------cc-CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC--
Confidence 34678999999999999888776421 00 123468999999999999999999999999999999987532
Q ss_pred ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc----------------ccccEE
Q 001162 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE----------------VLTGVF 982 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~----------------~~~~v~ 982 (1134)
...+...|..+ ...+++|||||+|.+. ....+.|+..|+... ...++.
T Consensus 77 ----~~~l~~~l~~~-~~~~~~l~lDEi~~l~-----------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 77 ----PGDLAAILANS-LEEGDILFIDEIHRLS-----------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp ----HHHHHHHHTTT-CCTTCEEEETTTTSCC-----------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ----hHHHHHHHHHh-ccCCCEEEEECCcccc-----------cchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 23344444331 2456799999999884 234445555554321 113578
Q ss_pred EEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHH
Q 001162 983 VFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLS 1061 (1134)
Q Consensus 983 vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~ 1061 (1134)
+|++||+++.+++++.+ ||+..+.|++|+.+++..+++.++...+.. ++..++.++..+.|. .+++.++++.+...
T Consensus 141 ~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGT-MRVAKRLFRRVRDF 217 (324)
T ss_dssp EEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSC-HHHHHHHHHHHTTT
T ss_pred EEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC-HHHHHHHHHHHHHH
Confidence 99999999999999998 999899999999999999999988766543 333467778887654 56766666544322
Q ss_pred HHHHHHhccCCCCCCCcccccHHHHHHHHhhcCC---CCcHHHHHHHHHHHHHhh
Q 001162 1062 AVHEILNNIDSNEPGKMPVITDALLKSIASKARP---SVSEAEKLRLYSIYGQFL 1113 (1134)
Q Consensus 1062 a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~~p---s~~~~~~~~~~~~~~~f~ 1113 (1134)
|. ......|+.+++..++..... .....+...+..+...|.
T Consensus 218 a~-----------~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~ 261 (324)
T 1hqc_A 218 AQ-----------VAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFG 261 (324)
T ss_dssp ST-----------TTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSC
T ss_pred HH-----------HhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhc
Confidence 21 123346899999888865432 344556666666666653
No 72
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.71 E-value=1e-16 Score=178.16 Aligned_cols=174 Identities=22% Similarity=0.301 Sum_probs=128.5
Q ss_pred CCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhccccc----HHHHHHHHHHhhhcCCeEEEEcCccc
Q 001162 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGAS----EQAVRDIFSKATAAAPCLLFFDEFDS 948 (1134)
Q Consensus 873 ~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~G~s----e~~v~~lf~~A~~~~P~VLfiDEid~ 948 (1134)
.+..++.++||+||||||||++|+++|+.++.+|+.+++++. +.|.. ...++.+|+.+....++||||||+|.
T Consensus 59 ~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~ 135 (272)
T 1d2n_A 59 SDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---MIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIER 135 (272)
T ss_dssp CSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---CTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHH
T ss_pred cCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---hcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhh
Confidence 344566789999999999999999999999999999998763 34433 35778899998878889999999999
Q ss_pred ccCCCCCCCCcchhhHHHhHhhhccccc-ccccEEEEEecCCCCccch-hhcCcCcccceeecCCCCH-HHHHHHHHHHH
Q 001162 949 IAPKRGHDNTGVTDRVVNQFLTELDGVE-VLTGVFVFAATSRPDLLDA-ALLRPGRLDRLLFCDFPSP-RERLDILKVIS 1025 (1134)
Q Consensus 949 l~~~r~~~~~~~~~rv~~~lL~~ld~~~-~~~~v~vIatTn~p~~ld~-allrpgRfd~~i~~~~p~~-~er~~Il~~~~ 1025 (1134)
++..+..+ ......+++.|...+++.. ...+++||+|||.++.+++ .+.+ ||+..+.+|+++. ++...++.
T Consensus 136 l~~~~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~--- 209 (272)
T 1d2n_A 136 LLDYVPIG-PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALE--- 209 (272)
T ss_dssp HTTCBTTT-TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHH---
T ss_pred hhccCCCC-hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHH---
Confidence 97765422 2335567777777777654 3457889999999999988 5555 9999999887765 44444443
Q ss_pred ccCCCCCcccHHHHHHhccCC----cHHHHHHHHH
Q 001162 1026 RKLPLADDVDLEAIAHMTEGF----SGADLQALLS 1056 (1134)
Q Consensus 1026 ~~~~~~~~vd~~~La~~t~g~----sg~dl~~l~~ 1056 (1134)
+...+ .+.++..+++.+.|| +.+++.+++.
T Consensus 210 ~~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~ 243 (272)
T 1d2n_A 210 LLGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIE 243 (272)
T ss_dssp HHTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHH
T ss_pred hcCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHH
Confidence 33333 455688888888887 3444444443
No 73
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.70 E-value=3.2e-16 Score=181.62 Aligned_cols=221 Identities=17% Similarity=0.188 Sum_probs=153.7
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~ 631 (1134)
.|.+++|.+..+..+......+.. +..++.++||+||||||||++|+++++.+... .+++.++|..
T Consensus 42 ~~~~ivG~~~~~~~l~~l~~~~~~----------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~----~~~~~~~~~~ 107 (368)
T 3uk6_A 42 ASQGMVGQLAARRAAGVVLEMIRE----------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD----TPFTAIAGSE 107 (368)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHT----------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS----CCEEEEEGGG
T ss_pred chhhccChHHHHHHHHHHHHHHHc----------CCCCCCEEEEECCCCCCHHHHHHHHHHHhccc----CCcccccchh
Confidence 367888988877665443322221 23445789999999999999999999998632 3455666554
Q ss_pred ccccc-------------------------------------------------hhhHHHHHHHHHHHHhh----c----
Q 001162 632 LSLEK-------------------------------------------------GPIIRQALSNFISEALD----H---- 654 (1134)
Q Consensus 632 l~~~~-------------------------------------------------~~~~~~~l~~~f~~a~~----~---- 654 (1134)
+.... .+.....++..+..+.. .
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~ 187 (368)
T 3uk6_A 108 IFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAE 187 (368)
T ss_dssp GSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC--
T ss_pred hhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccc
Confidence 22111 11112223333333221 1
Q ss_pred -CCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEec-----------CCCCCC
Q 001162 655 -APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASA-----------QSLEKI 722 (1134)
Q Consensus 655 -~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIatt-----------n~~~~L 722 (1134)
.|+||||||+|.+.. ...+.|...++.... +++++++. +.+..+
T Consensus 188 ~~~~vl~IDEi~~l~~---------------~~~~~L~~~le~~~~---------~~~ii~t~~~~~~i~~t~~~~~~~l 243 (368)
T 3uk6_A 188 IIPGVLFIDEVHMLDI---------------ESFSFLNRALESDMA---------PVLIMATNRGITRIRGTSYQSPHGI 243 (368)
T ss_dssp -CBCEEEEESGGGSBH---------------HHHHHHHHHTTCTTC---------CEEEEEESCSEEECBTSSCEEETTC
T ss_pred ccCceEEEhhccccCh---------------HHHHHHHHHhhCcCC---------CeeeeecccceeeeeccCCCCcccC
Confidence 268999999999841 344555555543221 35555554 346789
Q ss_pred ChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcccccCCCc
Q 001162 723 PQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSS 802 (1134)
Q Consensus 723 d~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~ 802 (1134)
+++|++ ||.. +.|++|+.+++.+|++..+...+..++++.+..++..+.+.+++++..++++|+..|..+
T Consensus 244 ~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~------- 313 (368)
T 3uk6_A 244 PIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR------- 313 (368)
T ss_dssp CHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT-------
T ss_pred CHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-------
Confidence 999999 8875 899999999999999999988888899999999999998669999999999998877544
Q ss_pred cccccccccchhhhHhhhhccc
Q 001162 803 FEKHIKPTLVRDDFSQAMHEFL 824 (1134)
Q Consensus 803 ~~~~~~~~lt~eDf~~Al~~~~ 824 (1134)
+...++.+|+.+++..+.
T Consensus 314 ----~~~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 314 ----KGTEVQVDDIKRVYSLFL 331 (368)
T ss_dssp ----TCSSBCHHHHHHHHHHSB
T ss_pred ----CCCCCCHHHHHHHHHHhc
Confidence 235689999998887643
No 74
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.69 E-value=2.8e-16 Score=216.30 Aligned_cols=337 Identities=17% Similarity=0.163 Sum_probs=190.2
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHh-----------hcCCeE
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL-----------DHAPSI 658 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~-----------~~~PsI 658 (1134)
++++||+||||||||++|+.+...+. . ..+..++++..... ..+.+.+...+.... ...+.|
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~---~--~~~~~infsa~ts~--~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSS---L--YDVVGINFSKDTTT--EHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCS---S--CEEEEEECCTTCCH--HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCC---C--CceEEEEeecCCCH--HHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 47899999999999999966655431 1 55677887765432 222333332221111 123469
Q ss_pred EEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHH---hccccccccCCCcEEEEEecCCCC-----CCChhhccCC
Q 001162 659 VIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE---YGEKRKSSCGIGPIAFVASAQSLE-----KIPQSLTSSG 730 (1134)
Q Consensus 659 L~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~---~~~~~~~~~~~~~V~vIattn~~~-----~Ld~aL~~~g 730 (1134)
+||||+|... .+..+++ ...+.|...++. +......+....++.+|||+|++. .++++|.|
T Consensus 1340 lFiDEinmp~---~d~yg~q------~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR-- 1408 (2695)
T 4akg_A 1340 LFCDEINLPK---LDKYGSQ------NVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR-- 1408 (2695)
T ss_dssp EEEETTTCSC---CCSSSCC------HHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--
T ss_pred EEeccccccc---ccccCch------hHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--
Confidence 9999998743 2333333 234445555553 111111222234689999999984 79999999
Q ss_pred CccccccCCCCCHHHHHHHHHHHhhhcccC------CCHH-------HHHHHh-------hhcCCCChhhHHHHHHHHHH
Q 001162 731 RFDFHVQLPAPAASERKAILEHEIQRRSLE------CSDE-------ILLDVA-------SKCDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 731 RF~~~i~l~~P~~eeR~~IL~~~l~~~~l~------~~~~-------~l~~la-------~~teG~s~~DL~~Lv~~a~~ 790 (1134)
|| ..+.++.|+.+++..|+..++....-. +.+. ....+. +...-|+.|||..+++..+.
T Consensus 1409 rf-~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~ 1487 (2695)
T 4akg_A 1409 HA-AILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYT 1487 (2695)
T ss_dssp TE-EEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHH
T ss_pred ee-eEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHh
Confidence 88 589999999999999999887643110 1111 111111 12346788998877766554
Q ss_pred HHhcccccCC----------------CccccccccccchhhhHhhhhccccceeccccccc----cCCCCCCCCCCCChh
Q 001162 791 AAVGRYLHSD----------------SSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTS----AEGGRSGWDDVGGLT 850 (1134)
Q Consensus 791 ~a~~r~~~~~----------------~~~~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~----~~~~~~~~~~i~gl~ 850 (1134)
.......... .......+.....+.+...+....+.......... .+.....|.++. .+
T Consensus 1488 ~~~~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~f~~~~~~~~~~~~~~f~df~~~~Y~~v~-~~ 1566 (2695)
T 4akg_A 1488 AINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYLPNQDLGNISSTSLLFSGLLSLDFKEVN-KT 1566 (2695)
T ss_dssp HHHTSSCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHHHSCCSCCCCCSTTTCCEESSSSSSCEECC-HH
T ss_pred cCchhhhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccchhhhccCCceeeecCCCcceecC-HH
Confidence 3211100000 00000011111111122222222211100000000 000112355553 35
Q ss_pred HHHHHHHHHHhc---------------CCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccc
Q 001162 851 DIQNAIKEMIEL---------------PSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 915 (1134)
Q Consensus 851 ~~k~~l~~~i~~---------------~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~ 915 (1134)
++++.+.+.+.. ++.|.....+.-..|++|+||+|++||||++++|..|..++..++.+..+.-+
T Consensus 1567 ~l~~~l~~~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~~p~G~~LLvGvgGsGkqSltrLaa~i~~~~~fqi~~~~~Y 1646 (2695)
T 4akg_A 1567 DLVNFIEERFKTFCDEELEVPMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHS 1646 (2695)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHHSSSEEEEEECTTTSCHHHHHHHHHHHTTCEEECCCCCTTC
T ss_pred HHHHHHHHHHHHHHhhcCCceeeeHHHHHHHHHHHHHHHcCCCCCEEEECCCCCcHHHHHHHHHHHhCCeeEEEEeeCCC
Confidence 666666665542 12222333333346788999999999999999999999999999999876533
Q ss_pred hhcccccHHHHHHHHHHh-hhcCCeEEEEcCccc
Q 001162 916 NKYIGASEQAVRDIFSKA-TAAAPCLLFFDEFDS 948 (1134)
Q Consensus 916 ~~~~G~se~~v~~lf~~A-~~~~P~VLfiDEid~ 948 (1134)
+ ..+-...++.++..| -.++|.+++|+|.+-
T Consensus 1647 ~--~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi 1678 (2695)
T 4akg_A 1647 N--LSDFDMILKKAISDCSLKESRTCLIIDESNI 1678 (2695)
T ss_dssp C--HHHHHHHHHHHHHHHHHSCCCEEEEEETTTC
T ss_pred C--HHHHHHHHHHHHHHcCCCCCceEEEEecccc
Confidence 2 223457889999988 456778888887653
No 75
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.68 E-value=1.1e-15 Score=175.00 Aligned_cols=218 Identities=17% Similarity=0.236 Sum_probs=159.7
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~ 631 (1134)
.+.+++|.+..++.+...+...... ..++.++||+||||||||++|+++++.++ ..++.++|..
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~----------~~~~~~vll~G~~GtGKT~la~~ia~~~~------~~~~~~~~~~ 90 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKR----------NECLDHILFSGPAGLGKTTLANIISYEMS------ANIKTTAAPM 90 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHT----------TSCCCCEEEECSTTSSHHHHHHHHHHHTT------CCEEEEEGGG
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhc----------CCCCCeEEEECcCCCCHHHHHHHHHHHhC------CCeEEecchh
Confidence 5778899999998888877554211 23456799999999999999999999986 6688888877
Q ss_pred ccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc---------cc
Q 001162 632 LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK---------RK 702 (1134)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~---------~~ 702 (1134)
+.. .+. +...+.. ...+++|||||+|.+.. .....|...++..... ..
T Consensus 91 ~~~--~~~----~~~~~~~--~~~~~vl~lDEi~~l~~---------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~ 147 (338)
T 3pfi_A 91 IEK--SGD----LAAILTN--LSEGDILFIDEIHRLSP---------------AIEEVLYPAMEDYRLDIIIGSGPAAQT 147 (338)
T ss_dssp CCS--HHH----HHHHHHT--CCTTCEEEEETGGGCCH---------------HHHHHHHHHHHTSCC---------CCC
T ss_pred ccc--hhH----HHHHHHh--ccCCCEEEEechhhcCH---------------HHHHHHHHHHHhccchhhcccCccccc
Confidence 642 222 3333332 24678999999998841 3444555555543210 00
Q ss_pred cccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHH
Q 001162 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE 782 (1134)
Q Consensus 703 ~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~ 782 (1134)
......++.+|++||....++++|++ ||+..++|++|+.+++.+|++.++...+..++++.+..++..+.| +++.+.
T Consensus 148 ~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~ 224 (338)
T 3pfi_A 148 IKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIAL 224 (338)
T ss_dssp CCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHH
T ss_pred eecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHH
Confidence 00111248999999999999999999 998899999999999999999999888888899999999997766 688999
Q ss_pred HHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhc
Q 001162 783 ILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1134)
Q Consensus 783 ~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1134)
++++++...+... ....++.+++..++..
T Consensus 225 ~~l~~~~~~a~~~-----------~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 225 RLLKRVRDFADVN-----------DEEIITEKRANEALNS 253 (338)
T ss_dssp HHHHHHHHHHHHT-----------TCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-----------cCCccCHHHHHHHHHH
Confidence 9999887655422 1234777787776654
No 76
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.67 E-value=8.7e-16 Score=182.10 Aligned_cols=226 Identities=19% Similarity=0.273 Sum_probs=150.4
Q ss_pred CCCCCCCCChhHHH---HHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccch
Q 001162 840 RSGWDDVGGLTDIQ---NAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 916 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k---~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~ 916 (1134)
+..+++++|++.+. +.|...+... ...++||+||||||||++|+++|+.++.+|+.+++..
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~--- 85 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT--- 85 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT---
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc---
Confidence 46899999999998 6777766532 1147999999999999999999999999999998754
Q ss_pred hcccccHHHHHHHHHHhhh----cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEec-CCC-
Q 001162 917 KYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT-SRP- 990 (1134)
Q Consensus 917 ~~~G~se~~v~~lf~~A~~----~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatT-n~p- 990 (1134)
.....++.+|..+.. ..+.||||||+|.+... ..+.|+..|+. ..+++|++| ..+
T Consensus 86 ----~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~-----------~q~~LL~~le~----~~v~lI~att~n~~ 146 (447)
T 3pvs_A 86 ----SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS-----------QQDAFLPHIED----GTITFIGATTENPS 146 (447)
T ss_dssp ----CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT----TSCEEEEEESSCGG
T ss_pred ----CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH-----------HHHHHHHHHhc----CceEEEecCCCCcc
Confidence 334567777777643 46789999999998432 34456666653 335555555 344
Q ss_pred CccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCC-------C-CCcccHHHHHHhccCCcHHHHHHHHHHHHHHH
Q 001162 991 DLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLP-------L-ADDVDLEAIAHMTEGFSGADLQALLSDAQLSA 1062 (1134)
Q Consensus 991 ~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~-------~-~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a 1062 (1134)
..+++++++ |+. ++.|++|+.+++..+++..+.... + -++..++.|+..+.| +.+++.+++..+...+
T Consensus 147 ~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~a 222 (447)
T 3pvs_A 147 FELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMADMA 222 (447)
T ss_dssp GSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHS
T ss_pred cccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHhc
Confidence 458999999 776 678999999999999999887521 1 123336667777654 4555555555444322
Q ss_pred HHHHHhccCCCCCCCcccccHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhc
Q 001162 1063 VHEILNNIDSNEPGKMPVITDALLKSIASKARPSVSEAEKLRLYSIYGQFLD 1114 (1134)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~it~e~l~~al~~~~ps~~~~~~~~~~~~~~~f~~ 1114 (1134)
. ....+...||.+++.+++....+...... ..+....+.|.+
T Consensus 223 ~---------~~~~~~~~It~e~v~~~l~~~~~~~dk~g-d~~yd~isal~k 264 (447)
T 3pvs_A 223 E---------VDDSGKRVLKPELLTEIAGERSARFDNKG-DRFYDLISALHK 264 (447)
T ss_dssp C---------BCTTSCEECCHHHHHHHHTCCCCC---CC-HHHHHHHHHHHH
T ss_pred c---------cccCCCCccCHHHHHHHHhhhhhccCCcc-chHHHHHHHHHH
Confidence 0 01113357999999999977655433222 223444445544
No 77
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.66 E-value=3.1e-16 Score=182.61 Aligned_cols=239 Identities=21% Similarity=0.238 Sum_probs=152.2
Q ss_pred CCCChhHHHHHHHHHHhcCCCchhHHh-----------------hCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEE
Q 001162 845 DVGGLTDIQNAIKEMIELPSKFPNIFA-----------------QAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFI 907 (1134)
Q Consensus 845 ~i~gl~~~k~~l~~~i~~~~~~~~~~~-----------------~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i 907 (1134)
.|+|++++++.|...+........... .....+..++||+||||||||++|+++|+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 578999999999988743222211100 011234568999999999999999999999999999
Q ss_pred EEeCcccc-hhccccc-HHHHHHHHHHhh----hcCCeEEEEcCcccccCCCCCCCC---cchhhHHHhHhhhccccc--
Q 001162 908 SVKGPELL-NKYIGAS-EQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNT---GVTDRVVNQFLTELDGVE-- 976 (1134)
Q Consensus 908 ~i~~~el~-~~~~G~s-e~~v~~lf~~A~----~~~P~VLfiDEid~l~~~r~~~~~---~~~~rv~~~lL~~ld~~~-- 976 (1134)
.+++..+. ..|.|.. +..+..++..+. ...++||||||+|.+...++.... .....+.+.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998876 4666764 455667766542 345789999999999876543221 112348889999888531
Q ss_pred -----------------ccccEEEEEecCCCCc------------------------------------------cchhh
Q 001162 977 -----------------VLTGVFVFAATSRPDL------------------------------------------LDAAL 997 (1134)
Q Consensus 977 -----------------~~~~v~vIatTn~p~~------------------------------------------ld~al 997 (1134)
...++++|+|||. +. +.|+|
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~-~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAF-DGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp ---------------CEECTTCEEEEEECC-TTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCH-HHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 1245677777762 22 44666
Q ss_pred cCcCcccceeecCCCCHHHHHHHHHH----HHc-------cCCCC---CcccHHHHHHhcc--CCcHHHHHHHHHHHHHH
Q 001162 998 LRPGRLDRLLFCDFPSPRERLDILKV----ISR-------KLPLA---DDVDLEAIAHMTE--GFSGADLQALLSDAQLS 1061 (1134)
Q Consensus 998 lrpgRfd~~i~~~~p~~~er~~Il~~----~~~-------~~~~~---~~vd~~~La~~t~--g~sg~dl~~l~~~A~~~ 1061 (1134)
.+ ||+.++.|++++.++...|++. +++ ..+.. ++..++.|+.... ....+.+++++..+...
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 66 8888999999999999999962 211 11111 2223455665533 35678999998888877
Q ss_pred HHHHHHhccCCCCCCCcccccHHHHHHHHh
Q 001162 1062 AVHEILNNIDSNEPGKMPVITDALLKSIAS 1091 (1134)
Q Consensus 1062 a~~~~~~~~~~~~~~~~~~it~e~l~~al~ 1091 (1134)
++.+.... ......||.+++..+.+
T Consensus 339 ~~~~~~~~-----~~~~~~i~~~~v~~~~~ 363 (376)
T 1um8_A 339 IMFDLPKL-----KGSEVRITKDCVLKQAE 363 (376)
T ss_dssp HHHTGGGG-----TTSEEEECHHHHTTSSC
T ss_pred HHhhccCC-----CCCEEEEeHHHhcCCCC
Confidence 76654321 12345799999987654
No 78
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.66 E-value=7.8e-16 Score=173.53 Aligned_cols=251 Identities=17% Similarity=0.184 Sum_probs=161.7
Q ss_pred ccccchhhHHHHHHHHHHhc-CCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccc
Q 001162 555 SLSWMGTTASDVINRIKVLL-SPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (1134)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll-~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~ 633 (1134)
.++|.+.+++.+...+.... ........ . ....+.++||+||||||||++|+++++.++ .+++.++|+.+.
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~-~-~~~~~~~vll~G~~GtGKT~la~~la~~l~------~~~~~i~~~~~~ 87 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPL-R-HEVTPKNILMIGPTGVGKTEIARRLAKLAN------APFIKVEATKFT 87 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHH-H-HHCCCCCEEEECCTTSSHHHHHHHHHHHHT------CCEEEEEGGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccc-c-ccCCCceEEEECCCCCCHHHHHHHHHHHhC------CCEEEEcchhcc
Confidence 46788888888877664421 11000000 0 113456799999999999999999999986 678899998876
Q ss_pred c-cchh-hHHHHHHHHHHHH-----hhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc-ccccc
Q 001162 634 L-EKGP-IIRQALSNFISEA-----LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK-RKSSC 705 (1134)
Q Consensus 634 ~-~~~~-~~~~~l~~~f~~a-----~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~-~~~~~ 705 (1134)
. .+.+ .....+..++..+ ....++||||||+|.+.+... ..........+.+.|...++...-. .....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~---~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~ 164 (310)
T 1ofh_A 88 EVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGE---YSGADVSREGVQRDLLPLVEGSTVSTKHGMV 164 (310)
T ss_dssp SCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSS---CCSSHHHHHHHHHHHHHHHHCCEEEETTEEE
T ss_pred cCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccc---ccccchhHHHHHHHHHHHhcCCeEecccccc
Confidence 4 2222 2233455555432 112467999999999974321 1122223334566677777753100 00011
Q ss_pred CCCcEEEEEe----cCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHH----H-------hh--hcccCCCHHHHHH
Q 001162 706 GIGPIAFVAS----AQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEH----E-------IQ--RRSLECSDEILLD 768 (1134)
Q Consensus 706 ~~~~V~vIat----tn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~----~-------l~--~~~l~~~~~~l~~ 768 (1134)
...++++|++ ++.+..++++|.+ ||+..++|++|+.+++.+|++. + +. ...+.++++++..
T Consensus 165 ~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 242 (310)
T 1ofh_A 165 KTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKK 242 (310)
T ss_dssp ECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHH
T ss_pred cCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHH
Confidence 1225788888 4567789999998 9998899999999999999983 1 11 2224689999999
Q ss_pred HhhhcC-------CCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhcc
Q 001162 769 VASKCD-------GYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1134)
Q Consensus 769 la~~te-------G~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1134)
++..+. +.+++.+..++++++..+..+... .......++.+++..++...
T Consensus 243 l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~-----~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 243 IAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASD-----MNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGG-----CTTCEEEECHHHHHHHTCSS
T ss_pred HHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCcc-----ccCCEEEEeeHHHHHHHHhh
Confidence 988872 568999999999987665433211 01122358889988887653
No 79
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.65 E-value=9e-16 Score=170.43 Aligned_cols=206 Identities=16% Similarity=0.222 Sum_probs=140.6
Q ss_pred ccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc-cc
Q 001162 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR-LS 633 (1134)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~-l~ 633 (1134)
.+.|.+..+++++.....+.. .....+..++.++||+||||||||++|+++|+.++ .+++.++|.. +.
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~-----~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~------~~~~~i~~~~~~~ 102 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQ-----QTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN------FPFIKICSPDKMI 102 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHH-----HHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT------CSEEEEECGGGCT
T ss_pred CCCCccHHHHHHHHHHHHHHH-----HHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC------CCEEEEeCHHHhc
Confidence 455677777777765322211 11222355678899999999999999999999976 5677777754 44
Q ss_pred ccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEE
Q 001162 634 LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFV 713 (1134)
Q Consensus 634 ~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vI 713 (1134)
+.........+..+|..+....+++|||||+|.+++.+.... .....+.+.|...++..... ..++++|
T Consensus 103 g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-----~~~~~~l~~L~~~~~~~~~~------~~~~~ii 171 (272)
T 1d2n_A 103 GFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP-----RFSNLVLQALLVLLKKAPPQ------GRKLLII 171 (272)
T ss_dssp TCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT-----BCCHHHHHHHHHHTTCCCST------TCEEEEE
T ss_pred CCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh-----hHHHHHHHHHHHHhcCccCC------CCCEEEE
Confidence 444444556778888888777889999999999975432111 11235566666655543211 1258899
Q ss_pred EecCCCCCCCh-hhccCCCccccccCCCCCH-HHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCC----ChhhHHHHHHH
Q 001162 714 ASAQSLEKIPQ-SLTSSGRFDFHVQLPAPAA-SERKAILEHEIQRRSLECSDEILLDVASKCDGY----DAYDLEILVDR 787 (1134)
Q Consensus 714 attn~~~~Ld~-aL~~~gRF~~~i~l~~P~~-eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~----s~~DL~~Lv~~ 787 (1134)
++||.++.+++ .+.+ ||...+++|+++. ++...++.. . ..++++.+..++..+.|| +.+++.+++++
T Consensus 172 ~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~---~--~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~ 244 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALEL---L--GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEM 244 (272)
T ss_dssp EEESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHH---H--TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHH
T ss_pred EecCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHHh---c--CCCCHHHHHHHHHHhcCCCccccHHHHHHHHHH
Confidence 99999888877 5565 9988899987776 555555543 1 246788899999999998 56667777666
Q ss_pred HH
Q 001162 788 TV 789 (1134)
Q Consensus 788 a~ 789 (1134)
+.
T Consensus 245 a~ 246 (272)
T 1d2n_A 245 SL 246 (272)
T ss_dssp HT
T ss_pred Hh
Confidence 54
No 80
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.64 E-value=7.3e-15 Score=156.17 Aligned_cols=200 Identities=18% Similarity=0.189 Sum_probs=141.5
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc-----CCcEEEEeCccc
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPEL 914 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~-----~~~~i~i~~~el 914 (1134)
+..|+++.|.++..+.+.+.+... ...+++|+||||||||++|+++++.+ ...++.+++++.
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc
Confidence 467889999999999998887632 12359999999999999999999876 467888888764
Q ss_pred chhcccccHHHHHHHHHHhh------hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecC
Q 001162 915 LNKYIGASEQAVRDIFSKAT------AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATS 988 (1134)
Q Consensus 915 ~~~~~G~se~~v~~lf~~A~------~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn 988 (1134)
.+ ...++..+.... ...+.||||||+|.+.+ ...+.++..++. ...++.+|++||
T Consensus 80 ~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~--~~~~~~~i~~~~ 140 (226)
T 2chg_A 80 RG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEM--YSKSCRFILSCN 140 (226)
T ss_dssp TC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH-----------HHHHHHHHHHHH--TTTTEEEEEEES
T ss_pred cC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH-----------HHHHHHHHHHHh--cCCCCeEEEEeC
Confidence 32 122333332221 25678999999999832 345566666653 245677888999
Q ss_pred CCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH
Q 001162 989 RPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEIL 1067 (1134)
Q Consensus 989 ~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~ 1067 (1134)
.++.+++++.+ ||. .+.|++|+.+++.++++.++...+.. ++..+..++..+.| +.+.+.+++..++..+
T Consensus 141 ~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~----- 211 (226)
T 2chg_A 141 YVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG----- 211 (226)
T ss_dssp CGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC-----
T ss_pred ChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC-----
Confidence 99999999999 887 88999999999999999888655443 23345666766654 3344444444332211
Q ss_pred hccCCCCCCCcccccHHHHHHHHh
Q 001162 1068 NNIDSNEPGKMPVITDALLKSIAS 1091 (1134)
Q Consensus 1068 ~~~~~~~~~~~~~it~e~l~~al~ 1091 (1134)
..||.+|+.+++.
T Consensus 212 -----------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 -----------EVVDADTIYQITA 224 (226)
T ss_dssp -----------SCBCHHHHHHHHH
T ss_pred -----------ceecHHHHHHHhc
Confidence 3699999999885
No 81
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.64 E-value=1.6e-15 Score=175.79 Aligned_cols=252 Identities=16% Similarity=0.120 Sum_probs=160.8
Q ss_pred cccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccccc
Q 001162 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635 (1134)
Q Consensus 556 l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~ 635 (1134)
++|.+.+++.+...+..................++.++||+||||||||++|+++|+.++ .+++.++|..+...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~------~~~~~~~~~~l~~~ 90 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD------VPFTMADATTLTEA 90 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT------CCEEEEEHHHHTTC
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC------CCEEEechHHhccc
Confidence 577888888877766432210000000001123567899999999999999999999986 78899999887643
Q ss_pred -chhhH-HHHHHHHHHHH----hhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----ccc----
Q 001162 636 -KGPII-RQALSNFISEA----LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKR---- 701 (1134)
Q Consensus 636 -~~~~~-~~~l~~~f~~a----~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~---- 701 (1134)
+.+.. .+.+..+|..+ ....++||||||+|.+.+.+..... ........+.+.|+..+++.. ...
T Consensus 91 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~-~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~ 169 (363)
T 3hws_A 91 GYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSI-TRDVSGEGVQQALLKLIEGTVAAVPPQGGRKH 169 (363)
T ss_dssp HHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC----CHHHHHHHHHHHHHHHHCC------------
T ss_pred ccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccccccccc-ccccchHHHHHHHHHHhcCceeeccCcccccc
Confidence 34433 45667777665 3345789999999999754332221 122222347778888887321 000
Q ss_pred ----ccccCCCcEEEEEecCCC----------CC-----------------------------------CChhhccCCCc
Q 001162 702 ----KSSCGIGPIAFVASAQSL----------EK-----------------------------------IPQSLTSSGRF 732 (1134)
Q Consensus 702 ----~~~~~~~~V~vIattn~~----------~~-----------------------------------Ld~aL~~~gRF 732 (1134)
.......++.+|++++.. .. +.+.|.+ ||
T Consensus 170 ~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~ 247 (363)
T 3hws_A 170 PQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RL 247 (363)
T ss_dssp ----CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TC
T ss_pred CCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--cc
Confidence 001122345666666642 11 6777877 99
Q ss_pred cccccCCCCCHHHHHHHHHH----Hhh---------hcccCCCHHHHHHHhh--hcCCCChhhHHHHHHHHHHHHhcccc
Q 001162 733 DFHVQLPAPAASERKAILEH----EIQ---------RRSLECSDEILLDVAS--KCDGYDAYDLEILVDRTVHAAVGRYL 797 (1134)
Q Consensus 733 ~~~i~l~~P~~eeR~~IL~~----~l~---------~~~l~~~~~~l~~la~--~teG~s~~DL~~Lv~~a~~~a~~r~~ 797 (1134)
+.++.|++|+.+++.+|+.. ++. ...+.++++++..++. ....+.+++|++++++++..++.+..
T Consensus 248 ~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~ 327 (363)
T 3hws_A 248 PVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLP 327 (363)
T ss_dssp CEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTT
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999875 221 1234578999999986 44667789999999999998887653
Q ss_pred cCCCccccccccccchhhhHhhh
Q 001162 798 HSDSSFEKHIKPTLVRDDFSQAM 820 (1134)
Q Consensus 798 ~~~~~~~~~~~~~lt~eDf~~Al 820 (1134)
... ......++.+++.+.+
T Consensus 328 ~~~----~~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 328 SME----DVEKVVIDESVIDGQS 346 (363)
T ss_dssp TCC----CSEEEECHHHHTTCCS
T ss_pred ccc----CCceeEEcHHHHhCcC
Confidence 211 1122456666665443
No 82
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.62 E-value=4e-15 Score=176.52 Aligned_cols=193 Identities=14% Similarity=0.203 Sum_probs=137.7
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc-----CCcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCC
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~-----~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~ 952 (1134)
..+++||||||||||++|+++|+++ +.+++.+++.++...+.+.........|.......|+||||||+|.+..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 4589999999999999999999988 88999999988766554332221122333333336889999999998542
Q ss_pred CCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCc---cchhhcCcCccc--ceeecCCCCHHHHHHHHHHHHcc
Q 001162 953 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRK 1027 (1134)
Q Consensus 953 r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~---ld~allrpgRfd--~~i~~~~p~~~er~~Il~~~~~~ 1027 (1134)
......|+..++.....+..+|+++.+.+.. +++++++ ||. ..+.+++|+.++|..|++..++.
T Consensus 210 ---------~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~ 278 (440)
T 2z4s_A 210 ---------TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEI 278 (440)
T ss_dssp ---------HHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 1234455555544334445666665555655 7899999 775 78999999999999999988865
Q ss_pred CC--CCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhcCC
Q 001162 1028 LP--LADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARP 1095 (1134)
Q Consensus 1028 ~~--~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~~p 1095 (1134)
.+ ++.+ .++.|+..+.| +.+++.+++..+...|... + ..||.+++..+++...+
T Consensus 279 ~~~~i~~e-~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~-----------~-~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 279 EHGELPEE-VLNFVAENVDD-NLRRLRGAIIKLLVYKETT-----------G-KEVDLKEAILLLKDFIK 334 (440)
T ss_dssp HTCCCCTT-HHHHHHHHCCS-CHHHHHHHHHHHHHHHHHS-----------S-SCCCHHHHHHHTSTTTC
T ss_pred cCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh-----------C-CCCCHHHHHHHHHHHhh
Confidence 44 4343 37788888874 7888888888776655321 1 24999999999987653
No 83
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.61 E-value=8e-15 Score=166.61 Aligned_cols=219 Identities=15% Similarity=0.203 Sum_probs=154.0
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~ 631 (1134)
.+.+++|.+..+..+.+.+..... ....+.++||+||||||||++|+++++.++ ..+++++|..
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~----------~~~~~~~vll~G~~GtGKT~la~~i~~~~~------~~~~~~~~~~ 73 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKA----------RKEPLEHLLLFGPPGLGKTTLAHVIAHELG------VNLRVTSGPA 73 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHH----------HCSCCCCCEEECCTTCCCHHHHHHHHHHHT------CCEEEECTTT
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHc----------cCCCCCcEEEECCCCCCHHHHHHHHHHHhC------CCEEEEeccc
Confidence 467788998888887776644321 012346799999999999999999999986 6677888887
Q ss_pred ccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc-----ccc---
Q 001162 632 LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK-----RKS--- 703 (1134)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~-----~~~--- 703 (1134)
+.. .+ .+...+..+ ...+++|||||+|.+.. .....|...++..... ...
T Consensus 74 ~~~--~~----~l~~~l~~~-~~~~~~l~lDEi~~l~~---------------~~~~~L~~~l~~~~~~~v~~~~~~~~~ 131 (324)
T 1hqc_A 74 IEK--PG----DLAAILANS-LEEGDILFIDEIHRLSR---------------QAEEHLYPAMEDFVMDIVIGQGPAART 131 (324)
T ss_dssp CCS--HH----HHHHHHTTT-CCTTCEEEETTTTSCCH---------------HHHHHHHHHHHHSEEEECCSSSSSCCC
T ss_pred cCC--hH----HHHHHHHHh-ccCCCEEEEECCccccc---------------chHHHHHHHHHhhhhHHhccccccccc
Confidence 643 11 122223221 24678999999998741 2334455555543210 000
Q ss_pred -ccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHH
Q 001162 704 -SCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE 782 (1134)
Q Consensus 704 -~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~ 782 (1134)
.....++.+|++||....++++|.+ ||..++.|++|+.+++.++++.++...+..++++.+..++..+.| +++.+.
T Consensus 132 ~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~ 208 (324)
T 1hqc_A 132 IRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAK 208 (324)
T ss_dssp EEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHH
T ss_pred cccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHH
Confidence 0011247899999999999999998 998899999999999999999998877888999999999999876 678888
Q ss_pred HHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhc
Q 001162 783 ILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1134)
Q Consensus 783 ~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1134)
.+++++...+..+ ....++.+++..++..
T Consensus 209 ~~l~~~~~~a~~~-----------~~~~i~~~~~~~~~~~ 237 (324)
T 1hqc_A 209 RLFRRVRDFAQVA-----------GEEVITRERALEALAA 237 (324)
T ss_dssp HHHHHHTTTSTTT-----------SCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----------cCCCCCHHHHHHHHHH
Confidence 8888775433211 1234677777666543
No 84
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.61 E-value=2e-15 Score=183.66 Aligned_cols=233 Identities=19% Similarity=0.305 Sum_probs=151.2
Q ss_pred cccccchhhHHHHHHHHHH-hcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccc
Q 001162 554 SSLSWMGTTASDVINRIKV-LLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (1134)
Q Consensus 554 ~~l~G~~~~~~~i~~~l~~-ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l 632 (1134)
.+++|++.....+.+.+.. .++.. . ++.++||+||||||||++++++|+.+. .++..++|..+
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~---------~-~g~~vll~Gp~GtGKTtlar~ia~~l~------~~~~~i~~~~~ 144 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKS---------L-KGPILCLAGPPGVGKTSLAKSIAKSLG------RKFVRISLGGV 144 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSS---------C-CSCEEEEESSSSSSHHHHHHHHHHHHT------CEEEEECCCC-
T ss_pred HHhccHHHHHHHHHHHHHHHHhccc---------C-CCCEEEEECCCCCCHHHHHHHHHHhcC------CCeEEEEeccc
Confidence 3577888887777665532 22211 2 456799999999999999999999986 67778888765
Q ss_pred cc---------cchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc--
Q 001162 633 SL---------EKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR-- 701 (1134)
Q Consensus 633 ~~---------~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~-- 701 (1134)
.. .+.+...+.+...|..+....| |+||||+|.+.+... + .....|++.++......
T Consensus 145 ~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~---~--------~~~~~LL~~ld~~~~~~~~ 212 (543)
T 3m6a_A 145 RDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR---G--------DPSSAMLEVLDPEQNSSFS 212 (543)
T ss_dssp -------------------CHHHHHHTTCSSSE-EEEEEESSSCC--------------------CCGGGTCTTTTTBCC
T ss_pred chhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc---c--------CHHHHHHHHHhhhhcceee
Confidence 33 2334444556666776655555 999999999864211 0 12233444444322110
Q ss_pred ----ccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhh-----c-----ccCCCHHHHH
Q 001162 702 ----KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR-----R-----SLECSDEILL 767 (1134)
Q Consensus 702 ----~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~-----~-----~l~~~~~~l~ 767 (1134)
.......++++|+|+|.++.++++|++ ||. .++|++|+.+++.+|++.++.. . .+.++++.+.
T Consensus 213 ~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~ 289 (543)
T 3m6a_A 213 DHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAIL 289 (543)
T ss_dssp CSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHH
T ss_pred cccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHH
Confidence 000111468999999999999999999 996 7999999999999999987632 1 3457888888
Q ss_pred HHhhh-cCCCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhc
Q 001162 768 DVASK-CDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1134)
Q Consensus 768 ~la~~-teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1134)
.++.. +.....++|++.+++++..+..+.... ......++.+++..++..
T Consensus 290 ~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~-----~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 290 DIIRYYTREAGVRSLERQLAAICRKAAKAIVAE-----ERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp HHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTT-----CCSCCEECTTTTHHHHCS
T ss_pred HHHHhCChhhchhHHHHHHHHHHHHHHHHHHhc-----CCcceecCHHHHHHHhCC
Confidence 87764 444677888888888887766554321 123356888888877643
No 85
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.61 E-value=3.4e-15 Score=168.18 Aligned_cols=198 Identities=8% Similarity=0.057 Sum_probs=135.4
Q ss_pred CCCceEEEcCCCCchhHHHHHHHHHc----------CCcEEEEeCcccchh----------c------ccccHHHHHHHH
Q 001162 877 LRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVKGPELLNK----------Y------IGASEQAVRDIF 930 (1134)
Q Consensus 877 ~~~~vLL~GppGtGKT~lA~alA~~~----------~~~~i~i~~~el~~~----------~------~G~se~~v~~lf 930 (1134)
.+.+++|+||||||||++++++++++ ...++.+||..+.+. + .|.+...++.+|
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f 123 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYI 123 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 45689999999999999999999988 457899999775432 2 234567788899
Q ss_pred HHh--hhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCc----cchhhcCcCccc
Q 001162 931 SKA--TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL----LDAALLRPGRLD 1004 (1134)
Q Consensus 931 ~~A--~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~----ld~allrpgRfd 1004 (1134)
... ....+.|+||||+|.+. ..+++..++.... ....+++||+++|..+. +++++++ ||.
T Consensus 124 ~~~~~~~~~~~ii~lDE~d~l~----------~q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~ 189 (318)
T 3te6_A 124 TNVPKAKKRKTLILIQNPENLL----------SEKILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL--KAH 189 (318)
T ss_dssp HHSCGGGSCEEEEEEECCSSSC----------CTHHHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTT
T ss_pred HHhhhccCCceEEEEecHHHhh----------cchHHHHHHhccc--ccCCcEEEEEEecCcccchhhcchhhhc--cCC
Confidence 875 45668899999999996 2345566665432 23457899999998765 5667777 887
Q ss_pred -ceeecCCCCHHHHHHHHHHHHccCCCC------------------------------------CcccHHHHHHhccCCc
Q 001162 1005 -RLLFCDFPSPRERLDILKVISRKLPLA------------------------------------DDVDLEAIAHMTEGFS 1047 (1134)
Q Consensus 1005 -~~i~~~~p~~~er~~Il~~~~~~~~~~------------------------------------~~vd~~~La~~t~g~s 1047 (1134)
..|.|++|+.++..+|++..++...-. ++..++.+|+... ..
T Consensus 190 ~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA-~~ 268 (318)
T 3te6_A 190 FTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVA-NV 268 (318)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHH-HH
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHH-hh
Confidence 689999999999999999888653210 1222444455321 22
Q ss_pred HHHHH---HHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHh
Q 001162 1048 GADLQ---ALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIAS 1091 (1134)
Q Consensus 1048 g~dl~---~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~ 1091 (1134)
.+|++ .+|+.|...|-.+.+..... ..+...||.+++.++..
T Consensus 269 ~GD~R~Al~ilr~A~~~ae~e~~~k~~~--~~~~~~i~~~~~~~~~~ 313 (318)
T 3te6_A 269 SGSTEKAFKICEAAVEISKKDFVRKGGL--QKGKLVVSQEMVPRYFS 313 (318)
T ss_dssp HCSHHHHHHHHHHHHHHHHHHHHHHTTE--ETTEECCSEECCTHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhccCC--CCCcEEeeHHHHHHHHH
Confidence 34444 46777777776665543221 23456677666655543
No 86
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.61 E-value=1.3e-15 Score=158.10 Aligned_cols=158 Identities=26% Similarity=0.364 Sum_probs=117.3
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc----------CCcEEEEe
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~----------~~~~i~i~ 910 (1134)
..|+++.|.++..+.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++.++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred ccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 5688899999888888777543 234579999999999999999999986 78899999
Q ss_pred Ccccc--hhcccccHHHHHHHHHHh-hhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEec
Q 001162 911 GPELL--NKYIGASEQAVRDIFSKA-TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT 987 (1134)
Q Consensus 911 ~~el~--~~~~G~se~~v~~lf~~A-~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatT 987 (1134)
+.++. ..+.|.....++.++..+ +...|+||||||+|.+.+.+...... .+.+.+...+ ...++.+|++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~---~~~~~l~~~~----~~~~~~~i~~~ 158 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM---DAGNMLKPAL----ARGELHCVGAT 158 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CC---CCHHHHHHHH----HTTSCCEEEEE
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchH---HHHHHHHHhh----ccCCeEEEEeC
Confidence 88876 355666777888888866 34568899999999997654322111 2222333323 23467788888
Q ss_pred CCCC-----ccchhhcCcCcccceeecCCCCHHHHHHHH
Q 001162 988 SRPD-----LLDAALLRPGRLDRLLFCDFPSPRERLDIL 1021 (1134)
Q Consensus 988 n~p~-----~ld~allrpgRfd~~i~~~~p~~~er~~Il 1021 (1134)
+.++ .+|+++.+ ||+ .+.|++|+.+++.+|+
T Consensus 159 ~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 159 TLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 8876 57999999 998 6899999999998775
No 87
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.61 E-value=2.2e-14 Score=166.43 Aligned_cols=221 Identities=16% Similarity=0.117 Sum_probs=153.1
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc---------CCcEEEEeCcc
Q 001162 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---------SLRFISVKGPE 913 (1134)
Q Consensus 843 ~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~---------~~~~i~i~~~e 913 (1134)
.+++.|.+...+.+...+..... ...+.+++|+||||||||++|+++++.+ +..++.+++..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 36789999999988887653211 1335689999999999999999999988 88999999876
Q ss_pred cchh----------------cccccHHH-HHHHHHHhh-hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccc
Q 001162 914 LLNK----------------YIGASEQA-VRDIFSKAT-AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV 975 (1134)
Q Consensus 914 l~~~----------------~~G~se~~-v~~lf~~A~-~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~ 975 (1134)
..+. +.|.+... +..++.... ...|+||||||+|.+...+ ....++..++..++..
T Consensus 89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~~~ 162 (387)
T 2v1u_A 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRINQEL 162 (387)
T ss_dssp SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHGGGCC
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhchhhc
Confidence 4321 12333333 445555443 3448899999999995432 1335566666665433
Q ss_pred cccccEEEEEecCCC---CccchhhcCcCcccc-eeecCCCCHHHHHHHHHHHHcc----CCCCCcccHHHHHHhcc---
Q 001162 976 EVLTGVFVFAATSRP---DLLDAALLRPGRLDR-LLFCDFPSPRERLDILKVISRK----LPLADDVDLEAIAHMTE--- 1044 (1134)
Q Consensus 976 ~~~~~v~vIatTn~p---~~ld~allrpgRfd~-~i~~~~p~~~er~~Il~~~~~~----~~~~~~vd~~~La~~t~--- 1044 (1134)
....++.+|++||.+ +.+++++.+ ||.. .+.|++|+.+++.+|++..++. ..+ .+..++.+++.+.
T Consensus 163 ~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 239 (387)
T 2v1u_A 163 GDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVL-DPDVVPLCAALAAREH 239 (387)
T ss_dssp -----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTB-CSSHHHHHHHHHHSSS
T ss_pred CCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCC-CHHHHHHHHHHHHHhc
Confidence 214567888899887 668999998 8875 8999999999999999988764 222 2334677777776
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhc
Q 001162 1045 GFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 1093 (1134)
Q Consensus 1045 g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~ 1093 (1134)
| ..+.+.++|+.|+..|..+ +...|+.+|+..++...
T Consensus 240 G-~~r~~~~~l~~a~~~a~~~-----------~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 240 G-DARRALDLLRVAGEIAERR-----------REERVRREHVYSARAEI 276 (387)
T ss_dssp C-CHHHHHHHHHHHHHHHHHT-----------TCSCBCHHHHHHHHHHH
T ss_pred c-CHHHHHHHHHHHHHHHHHc-----------CCCCcCHHHHHHHHHHH
Confidence 5 3556667777776555321 23568999999888754
No 88
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.60 E-value=2e-14 Score=152.83 Aligned_cols=208 Identities=17% Similarity=0.206 Sum_probs=146.2
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~ 631 (1134)
.+.++.|.+..++.+.+.+... .+.++||+||+|||||++++++++.+.... ....++.++|+.
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~---------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-~~~~~~~~~~~~ 78 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERK---------------NIPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASD 78 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTT---------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGG-GGGGEEEEETTC
T ss_pred CHHHHcCcHHHHHHHHHHHhCC---------------CCCeEEEECCCCCCHHHHHHHHHHHHhccc-cccceEEecccc
Confidence 3556788888888777655321 123599999999999999999999874322 124566777765
Q ss_pred ccccchhhHHHHHHHHHHHH--hhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 632 LSLEKGPIIRQALSNFISEA--LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a--~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
..+. ......+....... ....+.+|+|||+|.+.+ ...+.|...++.... +
T Consensus 79 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~l~~~l~~~~~---------~ 132 (226)
T 2chg_A 79 ERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA---------------DAQAALRRTMEMYSK---------S 132 (226)
T ss_dssp TTCH--HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH---------------HHHHHHHHHHHHTTT---------T
T ss_pred ccCh--HHHHHHHHHHhcccCCCccCceEEEEeChhhcCH---------------HHHHHHHHHHHhcCC---------C
Confidence 4432 22222232222211 124678999999999842 223445555555321 4
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
+.+|++++.++.+++.+.+ ||. .+.+++|+.+++.++++..+...+..++++.+..++..+.| +++.+..++++++
T Consensus 133 ~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~ 208 (226)
T 2chg_A 133 CRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA 208 (226)
T ss_dssp EEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred CeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 7888899998899999998 887 89999999999999999998877888899999999988876 6777777777665
Q ss_pred HHHhcccccCCCccccccccccchhhhHhhhh
Q 001162 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMH 821 (1134)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~ 821 (1134)
..+ ..++.+|+.+++.
T Consensus 209 ~~~----------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 209 AIG----------------EVVDADTIYQITA 224 (226)
T ss_dssp HTC----------------SCBCHHHHHHHHH
T ss_pred hcC----------------ceecHHHHHHHhc
Confidence 321 2477888877653
No 89
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.60 E-value=1.2e-14 Score=165.72 Aligned_cols=216 Identities=16% Similarity=0.250 Sum_probs=144.8
Q ss_pred CCCCCCC-C--hhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCccc
Q 001162 841 SGWDDVG-G--LTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPEL 914 (1134)
Q Consensus 841 ~~~~~i~-g--l~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el 914 (1134)
..|++++ | .......+...+..+ .....+++|+||||||||++|+++++.+ +.+++.+++.++
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~-----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENL-----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTT-----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 4677764 3 344455555554432 1234589999999999999999999988 899999999988
Q ss_pred chhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCC---
Q 001162 915 LNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPD--- 991 (1134)
Q Consensus 915 ~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~--- 991 (1134)
...+.+.........|..+. ..++||||||+|.+..+ ......++..++.....+..+|+++++.|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~---------~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~ 146 (324)
T 1l8q_A 77 AQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGK---------ERTQIEFFHIFNTLYLLEKQIILASDRHPQKLD 146 (324)
T ss_dssp HHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTC---------HHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCT
T ss_pred HHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCC---------hHHHHHHHHHHHHHHHCCCeEEEEecCChHHHH
Confidence 76655443332223333332 24789999999998542 123344444444433445577777777766
Q ss_pred ccchhhcCcCccc--ceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHH---HHHH
Q 001162 992 LLDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLS---AVHE 1065 (1134)
Q Consensus 992 ~ld~allrpgRfd--~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~---a~~~ 1065 (1134)
.+++++.+ ||+ ..+.|++ +.+++..|++..+...++. ++..++.|+..+ | +.+++.+++..+... ++.
T Consensus 147 ~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~~~~~l~- 220 (324)
T 1l8q_A 147 GVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLKGFEGLE- 220 (324)
T ss_dssp TSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHHCHHHHH-
T ss_pred HhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHcCHHHhc-
Confidence 58999998 886 6789999 9999999999988765543 233467788887 4 567777777665544 111
Q ss_pred HHhccCCCCCCCcccc-cHHHHHHHHhh
Q 001162 1066 ILNNIDSNEPGKMPVI-TDALLKSIASK 1092 (1134)
Q Consensus 1066 ~~~~~~~~~~~~~~~i-t~e~l~~al~~ 1092 (1134)
. .....| |.+++.+++..
T Consensus 221 -~--------~~~~~i~t~~~i~~~~~~ 239 (324)
T 1l8q_A 221 -R--------KERKERDKLMQIVEFVAN 239 (324)
T ss_dssp -H--------HHHHHHHHHHHHHHHHHH
T ss_pred -c--------ccccCCCCHHHHHHHHHH
Confidence 0 012357 88888887754
No 90
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.60 E-value=3.1e-15 Score=169.03 Aligned_cols=207 Identities=18% Similarity=0.258 Sum_probs=144.8
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchh---
Q 001162 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK--- 917 (1134)
Q Consensus 844 ~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~--- 917 (1134)
.++.|++.+++.+...+.... ..-..+.++..++||+||||||||++|+++|+.+ +.+++.++++.+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~----~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRAR----AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHH----HTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHh----cCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 357889999888888776421 0001122344579999999999999999999988 567999999876432
Q ss_pred --cc-------cccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc---------ccc
Q 001162 918 --YI-------GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---------VLT 979 (1134)
Q Consensus 918 --~~-------G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~---------~~~ 979 (1134)
++ |.... ..+........++||||||+|.+ ...+.+.|+..|+... ...
T Consensus 93 ~~l~g~~~~~~~~~~~--~~~~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEG--GQLTEAVRRRPYSVILFDAIEKA-----------HPDVFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp HHHHCCCTTSTTTTTC--CHHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEECTTSCEEECT
T ss_pred HHhcCCCCcccccccc--chHHHHHHhCCCeEEEEeChhhc-----------CHHHHHHHHHHHhcCEEEcCCCCEEECC
Confidence 22 21110 12222333444589999999998 3467788888876432 113
Q ss_pred cEEEEEecCC--------------------------CCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccC-----
Q 001162 980 GVFVFAATSR--------------------------PDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL----- 1028 (1134)
Q Consensus 980 ~v~vIatTn~--------------------------p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~----- 1028 (1134)
+++||+|||. ...++++|++ ||+..+.|++|+.+++..|++.++++.
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~ 237 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLA 237 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6889999998 3457888988 999999999999999999999876542
Q ss_pred --CCC---CcccHHHHHHhcc--CCcHHHHHHHHHHHHHHHHHHHHhc
Q 001162 1029 --PLA---DDVDLEAIAHMTE--GFSGADLQALLSDAQLSAVHEILNN 1069 (1134)
Q Consensus 1029 --~~~---~~vd~~~La~~t~--g~sg~dl~~l~~~A~~~a~~~~~~~ 1069 (1134)
+.. .+..++.|+...- ..+.++|++++..+...++.+.+..
T Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~ 285 (311)
T 4fcw_A 238 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILA 285 (311)
T ss_dssp TTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHHH
T ss_pred hCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHHh
Confidence 122 2223555666544 5678999999999998877665543
No 91
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.60 E-value=2.2e-15 Score=182.55 Aligned_cols=201 Identities=16% Similarity=0.178 Sum_probs=130.8
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCC-chhHHhhCCC---CCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcc
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSK-FPNIFAQAPL---RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPE 913 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~-~~~~~~~~~~---~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~e 913 (1134)
+.+..|++++|.+.+++.+.+.+..... .+..+...+. .+..++||+||||||||++|+++|++++.+++.+++++
T Consensus 33 yrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~ 112 (516)
T 1sxj_A 33 YAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASD 112 (516)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTS
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3457899999999999999988874211 1122222222 24578999999999999999999999999999999998
Q ss_pred cchhcccccH-------HHHHHHHHHh-----hhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccE
Q 001162 914 LLNKYIGASE-------QAVRDIFSKA-----TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGV 981 (1134)
Q Consensus 914 l~~~~~G~se-------~~v~~lf~~A-----~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v 981 (1134)
+.+.+..... ..++.+|..+ ....++||||||+|.+.... ...++.|+..++. ....+
T Consensus 113 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~--------~~~l~~L~~~l~~--~~~~i 182 (516)
T 1sxj_A 113 VRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD--------RGGVGQLAQFCRK--TSTPL 182 (516)
T ss_dssp CCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS--------TTHHHHHHHHHHH--CSSCE
T ss_pred cchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh--------HHHHHHHHHHHHh--cCCCE
Confidence 7654322110 0122333333 23567899999999996531 1234555555542 22345
Q ss_pred EEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCC--CCCcccHHHHHHhccCCcHHHHHHHHHH
Q 001162 982 FVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLP--LADDVDLEAIAHMTEGFSGADLQALLSD 1057 (1134)
Q Consensus 982 ~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~--~~~~vd~~~La~~t~g~sg~dl~~l~~~ 1057 (1134)
++++++.....+. .+. |+...+.|++|+.+++.++++.++.+.+ ++.+ .++.|+..+. +|++.+++.
T Consensus 183 Ili~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s~----GdiR~~i~~ 251 (516)
T 1sxj_A 183 ILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN-VIDRLIQTTR----GDIRQVINL 251 (516)
T ss_dssp EEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHTT----TCHHHHHHH
T ss_pred EEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC----CcHHHHHHH
Confidence 5555444434444 344 4445889999999999999988776543 4333 3777777765 455554443
No 92
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.59 E-value=1.3e-14 Score=184.08 Aligned_cols=224 Identities=20% Similarity=0.216 Sum_probs=160.9
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc----------CCcEEEEe
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~----------~~~~i~i~ 910 (1134)
..+++++|.++..+.+.+.+.. +...++||+||||||||++|+++|..+ +..++.++
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred CCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 4788999999888888776653 234589999999999999999999987 67788888
Q ss_pred Ccccc--hhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecC
Q 001162 911 GPELL--NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATS 988 (1134)
Q Consensus 911 ~~el~--~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn 988 (1134)
...+. .+|.|..+..++.+|+.+....++||||||+|.+.+.++... ....+.+.|...++ ...+.+|++|+
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~--~~~~~~~~L~~~l~----~~~~~~I~at~ 323 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG--GQVDAANLIKPLLS----SGKIRVIGSTT 323 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSS--CHHHHHHHHSSCSS----SCCCEEEEEEC
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCc--chHHHHHHHHHHHh----CCCeEEEEEeC
Confidence 88876 468899999999999999888889999999999987644321 12334444444443 35677888888
Q ss_pred CCC-----ccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccC----CCC-CcccHHHHHHhccC-----CcHHHHHH
Q 001162 989 RPD-----LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL----PLA-DDVDLEAIAHMTEG-----FSGADLQA 1053 (1134)
Q Consensus 989 ~p~-----~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~----~~~-~~vd~~~La~~t~g-----~sg~dl~~ 1053 (1134)
.++ .+|+++.| ||+ .+.|+.|+.+++.+||+.+.+.. .+. .+..+..++..+.| +.+..+..
T Consensus 324 ~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~ 400 (758)
T 1r6b_X 324 YQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 400 (758)
T ss_dssp HHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHH
T ss_pred chHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHH
Confidence 653 37899999 998 68999999999999999876542 221 23335556655444 44556777
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhc
Q 001162 1054 LLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 1093 (1134)
Q Consensus 1054 l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~ 1093 (1134)
++.+|...+... . .......++.+|+..++...
T Consensus 401 lld~a~~~~~~~---~----~~~~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 401 VIDEAGARARLM---P----VSKRKKTVNVADIESVVARI 433 (758)
T ss_dssp HHHHHHHHHHHS---S----SCCCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc---c----ccccCCccCHHHHHHHHHHh
Confidence 777775433211 0 11234578999999998764
No 93
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.59 E-value=5.9e-15 Score=176.56 Aligned_cols=185 Identities=24% Similarity=0.341 Sum_probs=131.5
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc----------CCcEEEE
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISV 909 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~----------~~~~i~i 909 (1134)
+..+++++|.+...+.+.+.+.. +...++||+||||||||++|+++|..+ +.+|+.+
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred cCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 35788999999999988887653 223589999999999999999999986 7889999
Q ss_pred eCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCC
Q 001162 910 KGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSR 989 (1134)
Q Consensus 910 ~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~ 989 (1134)
+++ .+|.|+.+..++.+|..+....|.||||| + ...+.+.|+..|+ ...+.+|++||.
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD---------~------~~~a~~~L~~~L~----~g~v~vI~at~~ 300 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID---------A------AIDASNILKPSLA----RGELQCIGATTL 300 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC---------C--------------CCCTT----SSSCEEEEECCT
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe---------C------chhHHHHHHHhhc----CCCEEEEecCCH
Confidence 888 77889988999999999998889999999 0 1124455666664 346889999999
Q ss_pred CC-----ccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccC----CCC-CcccHHHHHHhccCCc-----HHHHHHH
Q 001162 990 PD-----LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL----PLA-DDVDLEAIAHMTEGFS-----GADLQAL 1054 (1134)
Q Consensus 990 p~-----~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~----~~~-~~vd~~~La~~t~g~s-----g~dl~~l 1054 (1134)
++ .+|+++.| ||. .+.|+.|+.+++..|++.++.+. ++. .+..+..++..+.+|. +.....+
T Consensus 301 ~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~l 377 (468)
T 3pxg_A 301 DEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDL 377 (468)
T ss_dssp TTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHH
T ss_pred HHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHH
Confidence 87 48999999 998 49999999999999999887653 221 3334566666655444 3466667
Q ss_pred HHHHHHHH
Q 001162 1055 LSDAQLSA 1062 (1134)
Q Consensus 1055 ~~~A~~~a 1062 (1134)
+.+|...+
T Consensus 378 l~~a~~~~ 385 (468)
T 3pxg_A 378 IDEAGSKV 385 (468)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776544
No 94
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.59 E-value=2.5e-14 Score=153.93 Aligned_cols=202 Identities=20% Similarity=0.250 Sum_probs=145.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC---------------
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~--------------- 904 (1134)
+..++++.|.+...+.+...+... ..+..++|+||||||||++|+++++.++.
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred CccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 457888999999999998877531 12346999999999999999999987743
Q ss_pred ---------cEEEEeCcccchhcccccHHHHHHHHHHhh----hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhh
Q 001162 905 ---------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1134)
Q Consensus 905 ---------~~i~i~~~el~~~~~G~se~~v~~lf~~A~----~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ 971 (1134)
.++.++... ......++.+++.+. ...|.+|||||+|.+ .....+.|+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l-----------~~~~~~~l~~~ 149 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----------SRHSFNALLKT 149 (250)
T ss_dssp HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-----------CHHHHHHHHHH
T ss_pred HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccc-----------cHHHHHHHHHH
Confidence 223333221 122345666666543 345789999999997 23466777777
Q ss_pred cccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHH
Q 001162 972 LDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGAD 1050 (1134)
Q Consensus 972 ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~d 1050 (1134)
++. ...++.+|++|+.++.+++++.+ |+ ..+.|++|+.+++.++++.++...+.. ++..++.+++.+.| ..+.
T Consensus 150 l~~--~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~ 223 (250)
T 1njg_A 150 LEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRD 223 (250)
T ss_dssp HHS--CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHH
T ss_pred Hhc--CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 763 24568888889998889999988 65 678999999999999999988765443 33346778888876 6777
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHh
Q 001162 1051 LQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIAS 1091 (1134)
Q Consensus 1051 l~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~ 1091 (1134)
+.+++..|... ....||.+++.+++.
T Consensus 224 ~~~~~~~~~~~---------------~~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 224 ALSLTDQAIAS---------------GDGQVSTQAVSAMLG 249 (250)
T ss_dssp HHHHHHHHHTT---------------TTSSBCHHHHHHHSC
T ss_pred HHHHHHHHHhc---------------cCceecHHHHHHHhC
Confidence 77777655211 012699999998863
No 95
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.59 E-value=7.7e-15 Score=165.32 Aligned_cols=226 Identities=11% Similarity=0.124 Sum_probs=150.1
Q ss_pred cccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCC----ceeeEEEEEeccc
Q 001162 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVFVCCSR 631 (1134)
Q Consensus 556 l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~----~~~~~~~~v~~s~ 631 (1134)
|.|+++.++.+...+...+. ...|.+++|+||||||||++++++++++.... .....+++++|..
T Consensus 22 L~~Re~E~~~i~~~L~~~i~-----------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~ 90 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM-----------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE 90 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC
T ss_pred cCCHHHHHHHHHHHHHHHhc-----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc
Confidence 55688899998888866553 33467799999999999999999999986322 1136789999977
Q ss_pred ccccc----------------hhhHHHHHHHHHHHH--hhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001162 632 LSLEK----------------GPIIRQALSNFISEA--LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1134)
Q Consensus 632 l~~~~----------------~~~~~~~l~~~f~~a--~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1134)
+...+ .+.....+...|... ....+.|++|||+|.|. .+ .++..|.++
T Consensus 91 ~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--------~q------~~L~~l~~~ 156 (318)
T 3te6_A 91 LAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--------SE------KILQYFEKW 156 (318)
T ss_dssp CC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--------CT------HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--------cc------hHHHHHHhc
Confidence 54321 122344567777764 34567899999999995 01 233333333
Q ss_pred HHHhccccccccCCCcEEEEEecCCCCC----CChhhccCCCcc-ccccCCCCCHHHHHHHHHHHhhhcc----------
Q 001162 694 MDEYGEKRKSSCGIGPIAFVASAQSLEK----IPQSLTSSGRFD-FHVQLPAPAASERKAILEHEIQRRS---------- 758 (1134)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~----Ld~aL~~~gRF~-~~i~l~~P~~eeR~~IL~~~l~~~~---------- 758 (1134)
.. ... .++.+|+++|..+. +++++++ ||. .+|.|++|+.+|..+|++..+....
T Consensus 157 ~~-~~~--------s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~ 225 (318)
T 3te6_A 157 IS-SKN--------SKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDK 225 (318)
T ss_dssp HH-CSS--------CCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTT
T ss_pred cc-ccC--------CcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccc
Confidence 22 111 25899999998764 3455666 776 5799999999999999998876531
Q ss_pred -------------------------cCCCHHHHHHHhhh---cCCCChhhHHHHHHHHHHHHhcccccCCCccccccccc
Q 001162 759 -------------------------LECSDEILLDVASK---CDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPT 810 (1134)
Q Consensus 759 -------------------------l~~~~~~l~~la~~---teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~ 810 (1134)
..++++++..+|.. ..| +.|-.-.+|++|+..+-.+....... ..+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~G-D~R~Al~ilr~A~~~ae~e~~~k~~~--~~~~~~ 302 (318)
T 3te6_A 226 KEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSG-STEKAFKICEAAVEISKKDFVRKGGL--QKGKLV 302 (318)
T ss_dssp CCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHHHHTTE--ETTEEC
T ss_pred ccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHHHHhccCC--CCCcEE
Confidence 13688888888874 444 56666778888887775543321111 123345
Q ss_pred cchhhhHhhh
Q 001162 811 LVRDDFSQAM 820 (1134)
Q Consensus 811 lt~eDf~~Al 820 (1134)
++.+.+.+.+
T Consensus 303 i~~~~~~~~~ 312 (318)
T 3te6_A 303 VSQEMVPRYF 312 (318)
T ss_dssp CSEECCTHHH
T ss_pred eeHHHHHHHH
Confidence 5555554443
No 96
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.59 E-value=1.9e-14 Score=165.18 Aligned_cols=213 Identities=20% Similarity=0.221 Sum_probs=133.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC-------c-------
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL-------R------- 905 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~-------~------- 905 (1134)
...|+++.|.+.+++.+......+ ...++||+||||||||++|+++|+.++. +
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~~-------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 86 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVE 86 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHCG-------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGG
T ss_pred CCCchhccChHHHHHHHHHHhhCC-------------CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccc
Confidence 467999999999887754443321 2347999999999999999999998863 1
Q ss_pred -------------------EEEEeCcccchhcccccHHHHHHHHHHh---------hhcCCeEEEEcCcccccCCCCCCC
Q 001162 906 -------------------FISVKGPELLNKYIGASEQAVRDIFSKA---------TAAAPCLLFFDEFDSIAPKRGHDN 957 (1134)
Q Consensus 906 -------------------~i~i~~~el~~~~~G~se~~v~~lf~~A---------~~~~P~VLfiDEid~l~~~r~~~~ 957 (1134)
++.+........+.|... +...+..+ ....++||||||+|.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~------- 157 (350)
T 1g8p_A 87 MIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLLE------- 157 (350)
T ss_dssp GSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC-------
T ss_pred cccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhCC-------
Confidence 222111111111112100 11222222 11235799999999983
Q ss_pred CcchhhHHHhHhhhcccc----c-------ccccEEEEEecCCCC-ccchhhcCcCcccceeecCCC-CHHHHHHHHHHH
Q 001162 958 TGVTDRVVNQFLTELDGV----E-------VLTGVFVFAATSRPD-LLDAALLRPGRLDRLLFCDFP-SPRERLDILKVI 1024 (1134)
Q Consensus 958 ~~~~~rv~~~lL~~ld~~----~-------~~~~v~vIatTn~p~-~ld~allrpgRfd~~i~~~~p-~~~er~~Il~~~ 1024 (1134)
..+.+.|+..|+.- . ...++++|+|||..+ .+++++++ ||+..+.+++| +.+++.+|++..
T Consensus 158 ----~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~ 231 (350)
T 1g8p_A 158 ----DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRR 231 (350)
T ss_dssp ----HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHH
Confidence 34556666665421 1 113688999999754 79999999 99988999998 677887888663
Q ss_pred Hc-------------------------------cCCCCCcccHHHHHHhccCC---cHHHHHHHHHHHHHHHHHHHHhcc
Q 001162 1025 SR-------------------------------KLPLADDVDLEAIAHMTEGF---SGADLQALLSDAQLSAVHEILNNI 1070 (1134)
Q Consensus 1025 ~~-------------------------------~~~~~~~vd~~~La~~t~g~---sg~dl~~l~~~A~~~a~~~~~~~~ 1070 (1134)
++ ...+ ++..++.|+....+. +.+.+.++++.|...|..+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-s~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~----- 305 (350)
T 1g8p_A 232 DTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEA-PNTALYDCAALCIALGSDGLRGELTLLRSARALAALE----- 305 (350)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBC-CHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHT-----
T ss_pred HhcccCchhhccccccchHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHc-----
Confidence 11 1122 222344555554332 4577777777666555322
Q ss_pred CCCCCCCcccccHHHHHHHHhh
Q 001162 1071 DSNEPGKMPVITDALLKSIASK 1092 (1134)
Q Consensus 1071 ~~~~~~~~~~it~e~l~~al~~ 1092 (1134)
+...|+.+|+..++..
T Consensus 306 ------~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 306 ------GATAVGRDHLKRVATM 321 (350)
T ss_dssp ------TCSBCCHHHHHHHHHH
T ss_pred ------CCCcCCHHHHHHHHHH
Confidence 2346999999998864
No 97
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.58 E-value=1.1e-13 Score=158.47 Aligned_cols=235 Identities=20% Similarity=0.270 Sum_probs=161.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcc
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~ 919 (1134)
...++++.|.+.+++.+...+..... .+ .++.+++|+||||||||++|+++|++++.++...+++.+..
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~--- 89 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKM-------RG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--- 89 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHH-------HT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS---
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHh-------cC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC---
Confidence 35778888888888888766643100 01 23457999999999999999999999999988887765432
Q ss_pred cccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc----------------ccccEEE
Q 001162 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE----------------VLTGVFV 983 (1134)
Q Consensus 920 G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~----------------~~~~v~v 983 (1134)
...+..++... ..++|+||||++.+.+ .+.+.++..|+... ....+.+
T Consensus 90 ---~~~l~~~~~~~--~~~~v~~iDE~~~l~~-----------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 90 ---QGDMAAILTSL--ERGDVLFIDEIHRLNK-----------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp ---HHHHHHHHHHC--CTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred ---HHHHHHHHHHc--cCCCEEEEcchhhcCH-----------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 23344444432 2457999999999853 12222332222110 1124677
Q ss_pred EEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHHH
Q 001162 984 FAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSA 1062 (1134)
Q Consensus 984 IatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a 1062 (1134)
+++|+++..+++++++ ||...+.+++|+.+++.+|++...+..++. ++.....++..+.|. .+++.++++.+...|
T Consensus 154 i~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~-~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 154 VGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGT-PRIAIRLTKRVRDML 230 (334)
T ss_dssp EEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTC-HHHHHHHHHHHHHHH
T ss_pred EEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCC-hHHHHHHHHHHHHHH
Confidence 7899999999999999 998889999999999999999988766554 233367778888764 577777787766555
Q ss_pred HHHHHhccCCCCCCCcccccHHHHHHHHhhcCC---CCcHHHHHHHHHHHHHhhcc
Q 001162 1063 VHEILNNIDSNEPGKMPVITDALLKSIASKARP---SVSEAEKLRLYSIYGQFLDS 1115 (1134)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~it~e~l~~al~~~~p---s~~~~~~~~~~~~~~~f~~~ 1115 (1134)
..+ +...||.+++..++..... ..+..+..-+..+...|..+
T Consensus 231 ~~~-----------~~~~It~~~v~~al~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 275 (334)
T 1in4_A 231 TVV-----------KADRINTDIVLKTMEVLNIDDEGLDEFDRKILKTIIEIYRGG 275 (334)
T ss_dssp HHH-----------TCSSBCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSTTC
T ss_pred HHc-----------CCCCcCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHhCCC
Confidence 432 1246999999999987543 23345555567777777443
No 98
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.58 E-value=1.8e-13 Score=188.77 Aligned_cols=139 Identities=17% Similarity=0.317 Sum_probs=98.3
Q ss_pred CCCceEEEcCCCCchhHHH-HHHHHHcCCcEEEEeCcccchhcccccHHHHHHHHHHh----h-----------hcCCeE
Q 001162 877 LRSNVLLYGPPGCGKTHIV-GAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKA----T-----------AAAPCL 940 (1134)
Q Consensus 877 ~~~~vLL~GppGtGKT~lA-~alA~~~~~~~i~i~~~el~~~~~G~se~~v~~lf~~A----~-----------~~~P~V 940 (1134)
.+.++||+||||||||++| ++++...+..++.++.+... +...+...++.. + .++++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~t------s~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDT------TTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTC------CHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCC------CHHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 3468999999999999999 55555557888888887643 233455555432 0 234579
Q ss_pred EEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccc--------cccEEEEEecCCCC-----ccchhhcCcCccccee
Q 001162 941 LFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV--------LTGVFVFAATSRPD-----LLDAALLRPGRLDRLL 1007 (1134)
Q Consensus 941 LfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~--------~~~v~vIatTn~p~-----~ld~allrpgRfd~~i 1007 (1134)
|||||++.....+ ......-+++.+++. ..++.. ..++.+|||||.|. .|+++++| || .++
T Consensus 1340 lFiDEinmp~~d~--yg~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi 1413 (2695)
T 4akg_A 1340 LFCDEINLPKLDK--YGSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AIL 1413 (2695)
T ss_dssp EEEETTTCSCCCS--SSCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEE
T ss_pred EEecccccccccc--cCchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEE
Confidence 9999999754332 222334455566552 223221 23589999999995 69999999 88 789
Q ss_pred ecCCCCHHHHHHHHHHHHcc
Q 001162 1008 FCDFPSPRERLDILKVISRK 1027 (1134)
Q Consensus 1008 ~~~~p~~~er~~Il~~~~~~ 1027 (1134)
+++.|+.+++..|+..+++.
T Consensus 1414 ~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1414 YLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp ECCCCTTTHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 99
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.58 E-value=2.2e-14 Score=166.56 Aligned_cols=228 Identities=18% Similarity=0.204 Sum_probs=151.6
Q ss_pred cccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCC---ceeeEEEEEecc
Q 001162 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCCS 630 (1134)
Q Consensus 554 ~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~---~~~~~~~~v~~s 630 (1134)
..+.|.+..++.+.+.+...+. ...+.+++|+||||||||++++++++.+.... .....+++++|.
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~-----------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR-----------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS-----------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 5678888888888775543321 23456799999999999999999999883210 012778899987
Q ss_pred cccccc-----------------hhhHHHHHHHHHHHHhh-cCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHH
Q 001162 631 RLSLEK-----------------GPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (1134)
Q Consensus 631 ~l~~~~-----------------~~~~~~~l~~~f~~a~~-~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~ 692 (1134)
...... .......+..++..... ..|.+|||||+|.+.... . ....+..
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~----------~---~~~~l~~ 154 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP----------G---GQDLLYR 154 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST----------T---HHHHHHH
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC----------C---CChHHHh
Confidence 643211 00122223344444332 347899999999986311 0 1122333
Q ss_pred HHHHhccccccccCCCcEEEEEecCCC---CCCChhhccCCCccc-cccCCCCCHHHHHHHHHHHhhh--cccCCCHHHH
Q 001162 693 IMDEYGEKRKSSCGIGPIAFVASAQSL---EKIPQSLTSSGRFDF-HVQLPAPAASERKAILEHEIQR--RSLECSDEIL 766 (1134)
Q Consensus 693 ~ld~~~~~~~~~~~~~~V~vIattn~~---~~Ld~aL~~~gRF~~-~i~l~~P~~eeR~~IL~~~l~~--~~l~~~~~~l 766 (1134)
+++...... ...++.+|+++|.. +.+++.+.+ ||.. .++|++|+.+++.+|++..+.. .+..++++.+
T Consensus 155 l~~~~~~~~----~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~ 228 (387)
T 2v1u_A 155 ITRINQELG----DRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVV 228 (387)
T ss_dssp HHHGGGCC---------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHH
T ss_pred HhhchhhcC----CCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHH
Confidence 333222100 01257899999887 678889988 8875 8999999999999999988864 3456778888
Q ss_pred HHHhhhcC---CCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhcc
Q 001162 767 LDVASKCD---GYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1134)
Q Consensus 767 ~~la~~te---G~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1134)
..++..+. | +++.+..+++++...+..+ ....++.+++..++...
T Consensus 229 ~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~-----------~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 229 PLCAALAAREHG-DARRALDLLRVAGEIAERR-----------REERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHT-----------TCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHc-----------CCCCcCHHHHHHHHHHH
Confidence 88888877 6 6788888999887665432 22457888888877654
No 100
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.58 E-value=3.3e-14 Score=160.60 Aligned_cols=215 Identities=15% Similarity=0.201 Sum_probs=146.7
Q ss_pred ccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccc
Q 001162 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1134)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~ 634 (1134)
.+.|.+.+++.+...+....... .....+..++||+||||||||++|+++++.+.... .+++.++|+.+..
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~------~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~---~~~~~~~~~~~~~ 88 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGL------KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRIDMTEYME 88 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTC------SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCG---GGEEEEEGGGCCS
T ss_pred hcCCHHHHHHHHHHHHHHHhcCC------CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCC---cceEEeecccccc
Confidence 45678888888888775432100 00122345799999999999999999999985322 4578889987654
Q ss_pred cchhhHHHHH------------HHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcccc-
Q 001162 635 EKGPIIRQAL------------SNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR- 701 (1134)
Q Consensus 635 ~~~~~~~~~l------------~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~- 701 (1134)
.... ...+ ..+........+++|||||+|.+.+ .+...|...++...-..
T Consensus 89 ~~~~--~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~---------------~~~~~Ll~~le~~~~~~~ 151 (311)
T 4fcw_A 89 KHAV--SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP---------------DVFNILLQMLDDGRLTDS 151 (311)
T ss_dssp TTHH--HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH---------------HHHHHHHHHHHHSEEECT
T ss_pred cccH--HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH---------------HHHHHHHHHHhcCEEEcC
Confidence 3210 0000 1111222223458999999998841 45556666666533111
Q ss_pred -ccccCCCcEEEEEecCC--------------------------CCCCChhhccCCCccccccCCCCCHHHHHHHHHHHh
Q 001162 702 -KSSCGIGPIAFVASAQS--------------------------LEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEI 754 (1134)
Q Consensus 702 -~~~~~~~~V~vIattn~--------------------------~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l 754 (1134)
.......++++|+|||. ...+++.|.+ ||+..+.+++|+.+++.+|++.++
T Consensus 152 ~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l 229 (311)
T 4fcw_A 152 HGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQM 229 (311)
T ss_dssp TSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHT
T ss_pred CCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHH
Confidence 11111235779999998 4467888887 999899999999999999999877
Q ss_pred hhc---------ccCCCHHHHHHHhhhcC--CCChhhHHHHHHHHHHHHhcccc
Q 001162 755 QRR---------SLECSDEILLDVASKCD--GYDAYDLEILVDRTVHAAVGRYL 797 (1134)
Q Consensus 755 ~~~---------~l~~~~~~l~~la~~te--G~s~~DL~~Lv~~a~~~a~~r~~ 797 (1134)
... ...++++.+..++.... .++.++|+.++++++..+..+.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 283 (311)
T 4fcw_A 230 SYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 283 (311)
T ss_dssp HHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHH
Confidence 642 35588999999998766 67899999999999987776543
No 101
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.57 E-value=1.8e-14 Score=163.98 Aligned_cols=174 Identities=16% Similarity=0.183 Sum_probs=128.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~ 918 (1134)
.+..|++++|.+++++.+...+... ..+..+|++||||||||++|+++|++++.+++.+++++.
T Consensus 21 rP~~~~~ivg~~~~~~~l~~~l~~~------------~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~---- 84 (324)
T 3u61_B 21 RPSTIDECILPAFDKETFKSITSKG------------KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC---- 84 (324)
T ss_dssp CCCSTTTSCCCHHHHHHHHHHHHTT------------CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC----
T ss_pred CCCCHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc----
Confidence 4568999999999999999887721 233467888999999999999999999999999998773
Q ss_pred ccccHHHHHHHHHHhhhc-----CCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCcc
Q 001162 919 IGASEQAVRDIFSKATAA-----APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL 993 (1134)
Q Consensus 919 ~G~se~~v~~lf~~A~~~-----~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~l 993 (1134)
| ...++..+..+... .+.||||||+|.+.. ....+.|+..|+. ...++.||++||.++.+
T Consensus 85 -~--~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~--~~~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 85 -K--IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEA--YSSNCSIIITANNIDGI 149 (324)
T ss_dssp -C--HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHH--HGGGCEEEEEESSGGGS
T ss_pred -C--HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHh--CCCCcEEEEEeCCcccc
Confidence 2 44556555543222 568999999999841 4466777777763 33567788899999999
Q ss_pred chhhcCcCcccceeecCCCCHHHHHHHHHHHH-------ccCCCC-Cc-ccHHHHHHhccCC
Q 001162 994 DAALLRPGRLDRLLFCDFPSPRERLDILKVIS-------RKLPLA-DD-VDLEAIAHMTEGF 1046 (1134)
Q Consensus 994 d~allrpgRfd~~i~~~~p~~~er~~Il~~~~-------~~~~~~-~~-vd~~~La~~t~g~ 1046 (1134)
++++++ ||. .+.|++|+.++|.+|++.+. +..++. ++ ..++.++..+.|.
T Consensus 150 ~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd 208 (324)
T 3u61_B 150 IKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPD 208 (324)
T ss_dssp CTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSC
T ss_pred CHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCC
Confidence 999999 885 68999999999877765443 222332 22 3466677766543
No 102
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.57 E-value=3.3e-14 Score=153.62 Aligned_cols=204 Identities=14% Similarity=0.108 Sum_probs=139.9
Q ss_pred CCCCCCCC---hhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcC---CcEEEEeCccc
Q 001162 841 SGWDDVGG---LTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS---LRFISVKGPEL 914 (1134)
Q Consensus 841 ~~~~~i~g---l~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~---~~~i~i~~~el 914 (1134)
..|+++.+ ...+.+.+......+ ...+++|+||||||||++|+++++++. .+++.+++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGD-------------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTC-------------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 56777765 345666666655431 345899999999999999999998774 78899999887
Q ss_pred chhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccE-EEEEecCCCC--
Q 001162 915 LNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGV-FVFAATSRPD-- 991 (1134)
Q Consensus 915 ~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v-~vIatTn~p~-- 991 (1134)
...+.. .+.. ...+.+|||||+|.+... ....+.++..++.......+ +|++++..++
T Consensus 92 ~~~~~~--------~~~~--~~~~~vliiDe~~~~~~~---------~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 92 ASISTA--------LLEG--LEQFDLICIDDVDAVAGH---------PLWEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp GGSCGG--------GGTT--GGGSSEEEEETGGGGTTC---------HHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred HHHHHH--------HHHh--ccCCCEEEEeccccccCC---------HHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 654321 1111 144679999999998532 11234455555443333444 6665555554
Q ss_pred -ccchhhcCcCccc--ceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH
Q 001162 992 -LLDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEIL 1067 (1134)
Q Consensus 992 -~ld~allrpgRfd--~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~ 1067 (1134)
.+++++.+ ||. ..+.|++|+.+++.++++.+++..++. .+..++.++..+.| +.+++.+++..+...|..+
T Consensus 153 ~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~-- 227 (242)
T 3bos_A 153 GFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVH-- 227 (242)
T ss_dssp TCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHH--
T ss_pred HHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHh--
Confidence 35688888 775 899999999999999999988765543 33346677777764 6788888888777665432
Q ss_pred hccCCCCCCCcccccHHHHHHHHh
Q 001162 1068 NNIDSNEPGKMPVITDALLKSIAS 1091 (1134)
Q Consensus 1068 ~~~~~~~~~~~~~it~e~l~~al~ 1091 (1134)
...||.+++.++++
T Consensus 228 ----------~~~It~~~v~~~l~ 241 (242)
T 3bos_A 228 ----------QRKLTIPFVKEMLR 241 (242)
T ss_dssp ----------TCCCCHHHHHHHHT
T ss_pred ----------CCCCcHHHHHHHhh
Confidence 13599999999874
No 103
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.56 E-value=5.1e-14 Score=152.11 Aligned_cols=185 Identities=16% Similarity=0.182 Sum_probs=130.1
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhc
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSII 668 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~ 668 (1134)
.+.+++|+||||||||++++++++.+.... ..+.+++|+.+........ . ....+.+|+|||+|.+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~--------~--~~~~~~vliiDe~~~~~ 117 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELE---RRSFYIPLGIHASISTALL--------E--GLEQFDLICIDDVDAVA 117 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEGGGGGGSCGGGG--------T--TGGGSSEEEEETGGGGT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEHHHHHHHHHHHH--------H--hccCCCEEEEecccccc
Confidence 357799999999999999999999886442 4577888887664432211 1 11457899999999984
Q ss_pred cCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcE-EEEEecCCCC---CCChhhccCCCcc--ccccCCCCC
Q 001162 669 SSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI-AFVASAQSLE---KIPQSLTSSGRFD--FHVQLPAPA 742 (1134)
Q Consensus 669 ~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V-~vIattn~~~---~Ld~aL~~~gRF~--~~i~l~~P~ 742 (1134)
. .. .....|...++...... .+ ++++++..+. .+.+.+.+ ||. ..+++++|+
T Consensus 118 ~---------~~----~~~~~l~~~l~~~~~~~-------~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~ 175 (242)
T 3bos_A 118 G---------HP----LWEEAIFDLYNRVAEQK-------RGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMM 175 (242)
T ss_dssp T---------CH----HHHHHHHHHHHHHHHHC-------SCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCC
T ss_pred C---------CH----HHHHHHHHHHHHHHHcC-------CCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCC
Confidence 2 11 11223333333332211 23 4444444443 34578888 775 789999999
Q ss_pred HHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhh
Q 001162 743 ASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMH 821 (1134)
Q Consensus 743 ~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~ 821 (1134)
.+++.+++..++...++.++++.+..++..+.| +.+++..++++++..+... ...++.+++.+++.
T Consensus 176 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~------------~~~It~~~v~~~l~ 241 (242)
T 3bos_A 176 DDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVH------------QRKLTIPFVKEMLR 241 (242)
T ss_dssp GGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHH------------TCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHh------------CCCCcHHHHHHHhh
Confidence 999999999999888888999999999998876 7899999999888766422 13488888877653
No 104
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.55 E-value=5.1e-14 Score=151.50 Aligned_cols=205 Identities=16% Similarity=0.241 Sum_probs=142.8
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCcee-----------
Q 001162 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV----------- 621 (1134)
Q Consensus 553 ~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~----------- 621 (1134)
+.++.|.+..++.+.+.+.. ...+..++|+||+|+|||++++++++.+.......
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~--------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSL--------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 87 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHH--------------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 55778888888887776533 12235699999999999999999999876322100
Q ss_pred -------eEEEEEecccccccchhhHHHHHHHHHHHHh----hcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHH
Q 001162 622 -------AHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFL 690 (1134)
Q Consensus 622 -------~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~----~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L 690 (1134)
..+..+++.. ......+..++..+. ...+.+|+|||+|.+.. ...+.|
T Consensus 88 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~---------------~~~~~l 146 (250)
T 1njg_A 88 EIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFNAL 146 (250)
T ss_dssp HHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH---------------HHHHHH
T ss_pred HHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH---------------HHHHHH
Confidence 0122222221 111223444444432 23578999999998731 233445
Q ss_pred HHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHh
Q 001162 691 VDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVA 770 (1134)
Q Consensus 691 ~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la 770 (1134)
...++... ..+.+|++++....+++.+.+ |+ ..+++++|+.+++.++++.++...+..++++.+..++
T Consensus 147 ~~~l~~~~---------~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~ 214 (250)
T 1njg_A 147 LKTLEEPP---------EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 214 (250)
T ss_dssp HHHHHSCC---------TTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred HHHHhcCC---------CceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 55554321 147888889988889998888 65 4899999999999999999988777888999999999
Q ss_pred hhcCCCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhh
Q 001162 771 SKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAM 820 (1134)
Q Consensus 771 ~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al 820 (1134)
..+.| +++.+..++++++..+ ...++.+++.+++
T Consensus 215 ~~~~G-~~~~~~~~~~~~~~~~---------------~~~i~~~~v~~~~ 248 (250)
T 1njg_A 215 RAAEG-SLRDALSLTDQAIASG---------------DGQVSTQAVSAML 248 (250)
T ss_dssp HHHTT-CHHHHHHHHHHHHTTT---------------TSSBCHHHHHHHS
T ss_pred HHcCC-CHHHHHHHHHHHHhcc---------------CceecHHHHHHHh
Confidence 99987 8999999988874211 1257888887765
No 105
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.55 E-value=6e-14 Score=166.29 Aligned_cols=209 Identities=17% Similarity=0.197 Sum_probs=142.3
Q ss_pred cccccccchhhH---HHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEe
Q 001162 552 NVSSLSWMGTTA---SDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (1134)
Q Consensus 552 ~~~~l~G~~~~~---~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~ 628 (1134)
++.+++|.+..+ ..+...+..- . ..++||+||||||||++|+++++.++ ..+..++
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~--------------~-~~~vLL~GppGtGKTtlAr~ia~~~~------~~f~~l~ 82 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAG--------------H-LHSMILWGPPGTGKTTLAEVIARYAN------ADVERIS 82 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHT--------------C-CCEEEEECSTTSSHHHHHHHHHHHTT------CEEEEEE
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcC--------------C-CcEEEEECCCCCcHHHHHHHHHHHhC------CCeEEEE
Confidence 456777777666 4444433221 1 15699999999999999999999986 6677777
Q ss_pred cccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCC
Q 001162 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1134)
Q Consensus 629 ~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1134)
+... ....++..+...........+.||||||+|.+... ....|+..++..
T Consensus 83 a~~~---~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~---------------~q~~LL~~le~~----------- 133 (447)
T 3pvs_A 83 AVTS---GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS---------------QQDAFLPHIEDG----------- 133 (447)
T ss_dssp TTTC---CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---------------------CCHHHHHTT-----------
T ss_pred eccC---CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH---------------HHHHHHHHHhcC-----------
Confidence 7543 23333443433333333456889999999998421 122344444431
Q ss_pred cEEEEEec--CCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhh-------cccCCCHHHHHHHhhhcCCCChh
Q 001162 709 PIAFVASA--QSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR-------RSLECSDEILLDVASKCDGYDAY 779 (1134)
Q Consensus 709 ~V~vIatt--n~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~-------~~l~~~~~~l~~la~~teG~s~~ 779 (1134)
.+++|++| |....++++|.+ |+. ++.|++|+.+++..+++..+.. .++.++++.+..++..+.| +.+
T Consensus 134 ~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R 209 (447)
T 3pvs_A 134 TITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DAR 209 (447)
T ss_dssp SCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHH
T ss_pred ceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHH
Confidence 25666665 444578999999 876 7889999999999999998876 4566899999999999776 788
Q ss_pred hHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhcc
Q 001162 780 DLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1134)
Q Consensus 780 DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1134)
.+.+++++++..+... ..+...|+.+++.+++...
T Consensus 210 ~lln~Le~a~~~a~~~---------~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 210 RALNTLEMMADMAEVD---------DSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHHHHHHHHSCBC---------TTSCEECCHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhcccc---------cCCCCccCHHHHHHHHhhh
Confidence 8999999887654311 0122458888888777543
No 106
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.55 E-value=6.3e-14 Score=160.07 Aligned_cols=211 Identities=18% Similarity=0.159 Sum_probs=137.4
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcc-cc-hhcc
Q 001162 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPE-LL-NKYI 919 (1134)
Q Consensus 842 ~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~e-l~-~~~~ 919 (1134)
.++++.|.+++++.+...+.. +.++||+||||||||++|+++|+.++.+++.+++.. .. ....
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred hccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 345788999998888776542 248999999999999999999999999999998742 11 1111
Q ss_pred cccHH-HHHHHHHHhhhcC---CeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccc---------cccccEEEEEe
Q 001162 920 GASEQ-AVRDIFSKATAAA---PCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV---------EVLTGVFVFAA 986 (1134)
Q Consensus 920 G~se~-~v~~lf~~A~~~~---P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~---------~~~~~v~vIat 986 (1134)
|.... .....| ..... .+||||||++.+. ..+.+.|+..|+.. ....+++|++|
T Consensus 90 g~~~~~~~~~~~--~~~~g~l~~~vl~iDEi~~~~-----------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat 156 (331)
T 2r44_A 90 GTMIYNQHKGNF--EVKKGPVFSNFILADEVNRSP-----------AKVQSALLECMQEKQVTIGDTTYPLDNPFLVLAT 156 (331)
T ss_dssp EEEEEETTTTEE--EEEECTTCSSEEEEETGGGSC-----------HHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEE
T ss_pred CceeecCCCCce--EeccCcccccEEEEEccccCC-----------HHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEe
Confidence 11000 000000 00112 2699999999873 34566666666531 12335788888
Q ss_pred cCCCC-----ccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-----------------------CcccHHH
Q 001162 987 TSRPD-----LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-----------------------DDVDLEA 1038 (1134)
Q Consensus 987 Tn~p~-----~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-----------------------~~vd~~~ 1038 (1134)
+|..+ .+++++++ ||+..+.+++|+.+++.+|++......... ++..++.
T Consensus 157 ~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~ 234 (331)
T 2r44_A 157 QNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKY 234 (331)
T ss_dssp ECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHH
T ss_pred cCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHH
Confidence 88543 28999999 999889999999999999999887643211 1111233
Q ss_pred HHHhc-------------------cCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhc
Q 001162 1039 IAHMT-------------------EGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 1093 (1134)
Q Consensus 1039 La~~t-------------------~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~ 1093 (1134)
++... .|.+.+.+.++++.|...|... ++..|+.+|+..++..+
T Consensus 235 i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~-----------g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 235 IIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFN-----------NRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp HHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHT-----------TCSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHc-----------CCCCCCHHHHHHHHHHH
Confidence 33221 1456777777777665544321 33568999999988643
No 107
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.55 E-value=3.4e-14 Score=160.66 Aligned_cols=177 Identities=18% Similarity=0.207 Sum_probs=127.3
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc-----CCcEEEEeCc
Q 001162 838 GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGP 912 (1134)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~-----~~~~i~i~~~ 912 (1134)
+.+..|++++|.+.+++.+...+... ...++||+||||||||++|+++|+.+ +.+++.++++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 77 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTTTTTT-------------CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETT
T ss_pred cCCCCHHHHhCCHHHHHHHHHHHhCC-------------CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCc
Confidence 44578999999999999888766421 12359999999999999999999986 4568889987
Q ss_pred ccchhcccccHHHHHHHHHHh--hhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCC
Q 001162 913 ELLNKYIGASEQAVRDIFSKA--TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP 990 (1134)
Q Consensus 913 el~~~~~G~se~~v~~lf~~A--~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p 990 (1134)
+..+ .......+....... ....+.||||||+|.+. ....+.|+..|+. ...++.+|++||.+
T Consensus 78 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~L~~~le~--~~~~~~~i~~~~~~ 142 (319)
T 2chq_A 78 DERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-----------ADAQAALRRTMEM--YSKSCRFILSCNYV 142 (319)
T ss_dssp STTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC-----------HHHHHTTGGGTSS--SSSSEEEEEEESCG
T ss_pred cccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC-----------HHHHHHHHHHHHh--cCCCCeEEEEeCCh
Confidence 6432 111122222222111 12457899999999983 3456778887763 34567888889999
Q ss_pred CccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccC
Q 001162 991 DLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEG 1045 (1134)
Q Consensus 991 ~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g 1045 (1134)
+.+++++.+ |+. .+.|++|+.+++..+++.++++.++. ++..++.++..+.|
T Consensus 143 ~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 195 (319)
T 2chq_A 143 SRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG 195 (319)
T ss_dssp GGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT
T ss_pred hhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 999999999 775 78999999999999999988876653 22335556655443
No 108
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.55 E-value=2.9e-14 Score=169.20 Aligned_cols=199 Identities=17% Similarity=0.242 Sum_probs=138.7
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhcc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIIS 669 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~ 669 (1134)
+.+++||||||||||+|++++++.+.... ....+++++|..+.......+.......|.......+.+|||||+|.+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~-~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~ 208 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG 208 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHC-CSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC
Confidence 46799999999999999999999884221 01567889988764332222222111223333333789999999999852
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCC---CChhhccCCCcc--ccccCCCCCHH
Q 001162 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAAS 744 (1134)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~---Ld~aL~~~gRF~--~~i~l~~P~~e 744 (1134)
. ......+. ..++.+... +..++|++.+.+.. +++.|++ ||. ..+.+++|+.+
T Consensus 209 ~---------~~~q~~l~----~~l~~l~~~-------~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e 266 (440)
T 2z4s_A 209 K---------TGVQTELF----HTFNELHDS-------GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEE 266 (440)
T ss_dssp C---------HHHHHHHH----HHHHHHHTT-------TCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHH
T ss_pred C---------hHHHHHHH----HHHHHHHHC-------CCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHH
Confidence 1 01222333 333333221 12556666555554 7899998 885 68999999999
Q ss_pred HHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhccc
Q 001162 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (1134)
Q Consensus 745 eR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~ 824 (1134)
+|.+|++..+...++.++++.+..++..+.| +.+++..+++++...+... + ..++.+++..++....
T Consensus 267 ~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~-----------~-~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 267 TRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT-----------G-KEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHS-----------S-SCCCHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh-----------C-CCCCHHHHHHHHHHHh
Confidence 9999999998888888999999999998876 8999999999988766422 1 2488888888887654
No 109
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=1e-13 Score=159.33 Aligned_cols=209 Identities=19% Similarity=0.191 Sum_probs=142.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcC------CcEEEEeCc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS------LRFISVKGP 912 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~------~~~i~i~~~ 912 (1134)
.+..|++++|.+++++.+...+... ...++||+||||||||++|+++|+.++ ..++.++++
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSA-------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCT-------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcC-------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 4568999999999999988876531 123599999999999999999999864 468888887
Q ss_pred ccchhcccccHHHHHHHHHHhh----------------hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc
Q 001162 913 ELLNKYIGASEQAVRDIFSKAT----------------AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE 976 (1134)
Q Consensus 913 el~~~~~G~se~~v~~lf~~A~----------------~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~ 976 (1134)
+..+ ...+++.+.... ...+.||||||+|.+. ....+.|+..|+..
T Consensus 99 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~-----------~~~~~~Ll~~le~~- 160 (353)
T 1sxj_D 99 DERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT-----------ADAQSALRRTMETY- 160 (353)
T ss_dssp SCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC-----------HHHHHHHHHHHHHT-
T ss_pred cccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC-----------HHHHHHHHHHHHhc-
Confidence 7421 122222222111 1345699999999984 23456777777633
Q ss_pred ccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHH
Q 001162 977 VLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALL 1055 (1134)
Q Consensus 977 ~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~ 1055 (1134)
...+.+|.+||.++.+++++++ |+. .+.|++|+.++...+++..++..++. ++..++.++..+.|. .+.+.+++
T Consensus 161 -~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~-~r~~~~~l 235 (353)
T 1sxj_D 161 -SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD-LRRGITLL 235 (353)
T ss_dssp -TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC-HHHHHHHH
T ss_pred -CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HHHHHHHH
Confidence 2345566688999999999998 776 78999999999999999888665542 334467788877764 34444444
Q ss_pred HHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhc
Q 001162 1056 SDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 1093 (1134)
Q Consensus 1056 ~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~ 1093 (1134)
+.++..+-.. .....||.+|+..++...
T Consensus 236 ~~~~~~~~~~----------~~~~~It~~~v~~~~~~~ 263 (353)
T 1sxj_D 236 QSASKGAQYL----------GDGKNITSTQVEELAGVV 263 (353)
T ss_dssp HHTHHHHHHH----------CSCCCCCHHHHHHHHTCC
T ss_pred HHHHHhcCCC----------ccCccccHHHHHHHhCCC
Confidence 4443332111 011258889988887643
No 110
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.54 E-value=1.1e-13 Score=160.96 Aligned_cols=212 Identities=17% Similarity=0.155 Sum_probs=146.0
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc-----------CCcEEEEeCc
Q 001162 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----------SLRFISVKGP 912 (1134)
Q Consensus 844 ~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~-----------~~~~i~i~~~ 912 (1134)
+++.|.++..+.+...+..... -..+.+++|+||||||||++|+++++++ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 6789999988888877653211 1234589999999999999999999987 8999999986
Q ss_pred ccc-h----------h-------ccccc-HHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhH-HHhHhhhc
Q 001162 913 ELL-N----------K-------YIGAS-EQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRV-VNQFLTEL 972 (1134)
Q Consensus 913 el~-~----------~-------~~G~s-e~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv-~~~lL~~l 972 (1134)
+.. + . +.|.+ ...+..++..+....+ ||||||+|.+.... ...+ +..++..+
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~-------~~~~~l~~l~~~~ 162 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRR-------GGDIVLYQLLRSD 162 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHST-------TSHHHHHHHHTSS
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCC-------CCceeHHHHhcCC
Confidence 543 1 1 11222 2334555555544444 99999999996431 1233 45555433
Q ss_pred ccccccccEEEEEecCCC---CccchhhcCcCcccceeecCCCCHHHHHHHHHHHHcc----CCCCCcccHHHHHHhccC
Q 001162 973 DGVEVLTGVFVFAATSRP---DLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRK----LPLADDVDLEAIAHMTEG 1045 (1134)
Q Consensus 973 d~~~~~~~v~vIatTn~p---~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~----~~~~~~vd~~~La~~t~g 1045 (1134)
.++.||++||.+ +.+++++.+ ||...+.|++|+.+++.+|++..++. ..+ .+..++.+++.+.+
T Consensus 163 ------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~i~~~~~~ 233 (384)
T 2qby_B 163 ------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTY-DDEILSYIAAISAK 233 (384)
T ss_dssp ------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSC-CSHHHHHHHHHHHT
T ss_pred ------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCc-CHHHHHHHHHHHHh
Confidence 678888899987 568999988 88779999999999999999988763 222 23346677777662
Q ss_pred Cc--HHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhcC
Q 001162 1046 FS--GADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKAR 1094 (1134)
Q Consensus 1046 ~s--g~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~~ 1094 (1134)
.+ .+.+.++|+.|...|. +...|+.+|+..++....
T Consensus 234 ~~G~~r~a~~~l~~a~~~a~-------------~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 234 EHGDARKAVNLLFRAAQLAS-------------GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp TCCCHHHHHHHHHHHHHHTT-------------SSSCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhc-------------CCCccCHHHHHHHHHHHh
Confidence 22 3444455665544331 235799999998887653
No 111
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.54 E-value=7.9e-14 Score=162.12 Aligned_cols=219 Identities=16% Similarity=0.205 Sum_probs=149.5
Q ss_pred cccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCC----ce-eeEEEEEe
Q 001162 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DL-VAHIVFVC 628 (1134)
Q Consensus 554 ~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~----~~-~~~~~~v~ 628 (1134)
.++.|.+..++.+.+.+..... ...+++++|+||||||||++++++++.+.... .. ...+++++
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~-----------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK-----------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT-----------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHHHc-----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 5678899999999887766543 23356799999999999999999999873210 01 26788999
Q ss_pred cccccccchhh-------------------HHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHH-HH
Q 001162 629 CSRLSLEKGPI-------------------IRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIAL-TK 688 (1134)
Q Consensus 629 ~s~l~~~~~~~-------------------~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l-~~ 688 (1134)
|....+..... ....+..++..+.... .+|+|||+|.+..... . .+ ..
T Consensus 89 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~-------~----~~~l~ 156 (384)
T 2qby_B 89 CREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRG-------G----DIVLY 156 (384)
T ss_dssp HHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTT-------S----HHHHH
T ss_pred CccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCC-------C----ceeHH
Confidence 87654111100 1223334444443333 3999999999963110 0 12 22
Q ss_pred HHHHHHHHhccccccccCCCcEEEEEecCCC---CCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhh--cccCCCH
Q 001162 689 FLVDIMDEYGEKRKSSCGIGPIAFVASAQSL---EKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR--RSLECSD 763 (1134)
Q Consensus 689 ~L~~~ld~~~~~~~~~~~~~~V~vIattn~~---~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~--~~l~~~~ 763 (1134)
.|.. .. .++.+|++++.. +.+++.+.+ ||...++|++|+.+++.+|++..+.. ....+++
T Consensus 157 ~l~~---~~----------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~ 221 (384)
T 2qby_B 157 QLLR---SD----------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD 221 (384)
T ss_dssp HHHT---SS----------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS
T ss_pred HHhc---CC----------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH
Confidence 2222 11 258899999886 678899988 88779999999999999999998764 2356788
Q ss_pred HHHHHHhhhcCC--CChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhcc
Q 001162 764 EILLDVASKCDG--YDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1134)
Q Consensus 764 ~~l~~la~~teG--~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1134)
+.+..++..+.+ .+++.+..+++++...+. ....++.+++..++...
T Consensus 222 ~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~-------------~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 222 EILSYIAAISAKEHGDARKAVNLLFRAAQLAS-------------GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-------------SSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc-------------CCCccCHHHHHHHHHHH
Confidence 888888888872 256677778888776553 12457888888877654
No 112
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.54 E-value=3.2e-14 Score=182.47 Aligned_cols=199 Identities=24% Similarity=0.341 Sum_probs=130.9
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc----------CCcEEEEe
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~----------~~~~i~i~ 910 (1134)
..+++++|.++..+.+.+.+.. +...++||+||||||||++|+++|+.+ +.+++.++
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred CCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 5788999999888887776542 233579999999999999999999987 88999999
Q ss_pred Ccccc--hhcccccHHHHHHHHHHhhhc-CCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEec
Q 001162 911 GPELL--NKYIGASEQAVRDIFSKATAA-APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT 987 (1134)
Q Consensus 911 ~~el~--~~~~G~se~~v~~lf~~A~~~-~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatT 987 (1134)
++.+. .+|.|+.+..++.+|..+... .|+||||||+|.+.+.+.... ...+.+.+...++ ...+.+|++|
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g---~~~~~~~L~~~l~----~~~i~~I~at 306 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG---AVDAGNMLKPALA----RGELRLIGAT 306 (854)
T ss_dssp C-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHH----TTCCCEEEEE
T ss_pred hHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc---hHHHHHHHHHHHh----CCCeEEEEec
Confidence 99987 578899999999999998764 789999999999986543321 1233344444442 3457788888
Q ss_pred CCCCc----cchhhcCcCcccceeecCCCCHHHHHHHHHHHHccC----CCC-CcccHHHHHHhc-----cCCcHHHHHH
Q 001162 988 SRPDL----LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL----PLA-DDVDLEAIAHMT-----EGFSGADLQA 1053 (1134)
Q Consensus 988 n~p~~----ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~----~~~-~~vd~~~La~~t-----~g~sg~dl~~ 1053 (1134)
+.++. +|+++.| ||+. +.|+.|+.+++..|++.++... ++. .+..+..++..+ ++|.+.....
T Consensus 307 ~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~ 383 (854)
T 1qvr_A 307 TLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAID 383 (854)
T ss_dssp CHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHH
T ss_pred CchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHH
Confidence 87753 7999999 9986 8999999999999998776532 221 222344555543 3455666666
Q ss_pred HHHHHHHHH
Q 001162 1054 LLSDAQLSA 1062 (1134)
Q Consensus 1054 l~~~A~~~a 1062 (1134)
++.+|+..+
T Consensus 384 lldea~a~~ 392 (854)
T 1qvr_A 384 LIDEAAARL 392 (854)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666543
No 113
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.53 E-value=2.7e-14 Score=181.07 Aligned_cols=185 Identities=25% Similarity=0.338 Sum_probs=131.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc----------CCcEEEE
Q 001162 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISV 909 (1134)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~----------~~~~i~i 909 (1134)
...+++++|.++..+.+.+.+.. +...++||+||||||||++|+++|+.+ +.+++.+
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 35788999999999998887653 233579999999999999999999997 7888888
Q ss_pred eCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCC
Q 001162 910 KGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSR 989 (1134)
Q Consensus 910 ~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~ 989 (1134)
++ ..+|.|+.+..++.+|..+....|+||||| . ...+.+.|+..|+ ...+.+|+|||.
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~-------------~~~~~~~L~~~l~----~~~v~~I~at~~ 300 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID--A-------------AIDASNILKPSLA----RGELQCIGATTL 300 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C---------------------CCCTT----SSSCEEEEECCT
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc--C-------------chhHHHHHHHHHh----cCCEEEEeCCCh
Confidence 87 567889999999999999998999999999 0 1124455666664 456888999998
Q ss_pred CC-----ccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCC----CC-CcccHHHHHHhc-----cCCcHHHHHHH
Q 001162 990 PD-----LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLP----LA-DDVDLEAIAHMT-----EGFSGADLQAL 1054 (1134)
Q Consensus 990 p~-----~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~----~~-~~vd~~~La~~t-----~g~sg~dl~~l 1054 (1134)
.+ .+|++++| ||. .|.|+.|+.+++..||+.+..... +. .+..+..++..+ +++.+.+...+
T Consensus 301 ~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~l 377 (758)
T 3pxi_A 301 DEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDL 377 (758)
T ss_dssp TTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHH
T ss_pred HHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHH
Confidence 88 59999999 994 699999999999999998776532 21 222344455443 35556666677
Q ss_pred HHHHHHHH
Q 001162 1055 LSDAQLSA 1062 (1134)
Q Consensus 1055 ~~~A~~~a 1062 (1134)
+.+|+..+
T Consensus 378 l~~a~~~~ 385 (758)
T 3pxi_A 378 IDEAGSKV 385 (758)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776544
No 114
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.53 E-value=1.5e-13 Score=156.47 Aligned_cols=188 Identities=20% Similarity=0.289 Sum_probs=132.8
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~ 631 (1134)
++.++.|.+..++.+.+.+.. ...|..+|++||||||||++++++|+.++ ..+++++++.
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~--------------~~~~~~~L~~G~~G~GKT~la~~la~~l~------~~~~~i~~~~ 83 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSK--------------GKIPHIILHSPSPGTGKTTVAKALCHDVN------ADMMFVNGSD 83 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHT--------------TCCCSEEEECSSTTSSHHHHHHHHHHHTT------EEEEEEETTT
T ss_pred CHHHHhCcHHHHHHHHHHHHc--------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhC------CCEEEEcccc
Confidence 467788888887777665541 23345688889999999999999999987 7889999877
Q ss_pred ccccchhhHHHHHHHHHHHHh-hcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcE
Q 001162 632 LSLEKGPIIRQALSNFISEAL-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1134)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a~-~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1134)
.. ...++..+........ ...+.||||||+|.+.+ . ...+.|...++.... .+
T Consensus 84 ~~---~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~----~~~~~L~~~le~~~~---------~~ 137 (324)
T 3u61_B 84 CK---IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------A----ESQRHLRSFMEAYSS---------NC 137 (324)
T ss_dssp CC---HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------H----HHHHHHHHHHHHHGG---------GC
T ss_pred cC---HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------H----HHHHHHHHHHHhCCC---------Cc
Confidence 43 2333332322221111 12568999999999841 1 234556666665432 37
Q ss_pred EEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHH-------hhhcccCCCH-HHHHHHhhhcCCCChhhHH
Q 001162 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHE-------IQRRSLECSD-EILLDVASKCDGYDAYDLE 782 (1134)
Q Consensus 711 ~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~-------l~~~~l~~~~-~~l~~la~~teG~s~~DL~ 782 (1134)
.+|+++|.+..+++++++ ||. .+.|++|+.++|.+|++.+ +...++.+++ +.+..++..+.| +.+++.
T Consensus 138 ~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~ 213 (324)
T 3u61_B 138 SIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTI 213 (324)
T ss_dssp EEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHH
T ss_pred EEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHH
Confidence 888999999999999999 886 7999999999977665543 3445677888 899999998776 556666
Q ss_pred HHHHHHH
Q 001162 783 ILVDRTV 789 (1134)
Q Consensus 783 ~Lv~~a~ 789 (1134)
+.++.++
T Consensus 214 ~~L~~~~ 220 (324)
T 3u61_B 214 GELDSYS 220 (324)
T ss_dssp HHHHHHG
T ss_pred HHHHHHh
Confidence 6666554
No 115
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.51 E-value=6.1e-13 Score=154.64 Aligned_cols=224 Identities=13% Similarity=0.087 Sum_probs=152.1
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc----CCcEEEEeCcccchh--
Q 001162 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGPELLNK-- 917 (1134)
Q Consensus 844 ~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~----~~~~i~i~~~el~~~-- 917 (1134)
+++.|.++..+.+...+.... . .......+++|+||||||||++++++++.+ +..++.+++....+.
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~------~-~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~ 89 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWL------R-NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTA 89 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHH------H-STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHH
T ss_pred CCCCChHHHHHHHHHHHHHHH------c-CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHH
Confidence 678999998888888765321 0 011111279999999999999999999988 678999997654321
Q ss_pred -------c-------ccccHHHH-HHHHHHhh-hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccc--cc
Q 001162 918 -------Y-------IGASEQAV-RDIFSKAT-AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV--LT 979 (1134)
Q Consensus 918 -------~-------~G~se~~v-~~lf~~A~-~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~--~~ 979 (1134)
. .|.+...+ ..+..... ...|.||||||+|.+ .......|+..++.... ..
T Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----------~~~~~~~L~~~~~~~~~~~~~ 158 (389)
T 1fnn_A 90 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----------APDILSTFIRLGQEADKLGAF 158 (389)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----------CHHHHHHHHHHTTCHHHHSSC
T ss_pred HHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----------chHHHHHHHHHHHhCCCCCcC
Confidence 0 12222222 22222222 345889999999998 24567777777765433 14
Q ss_pred cEEEEEecCCC---CccchhhcCcCcccc-eeecCCCCHHHHHHHHHHHHccC---CCCCcccHHHHHHhccC-------
Q 001162 980 GVFVFAATSRP---DLLDAALLRPGRLDR-LLFCDFPSPRERLDILKVISRKL---PLADDVDLEAIAHMTEG------- 1045 (1134)
Q Consensus 980 ~v~vIatTn~p---~~ld~allrpgRfd~-~i~~~~p~~~er~~Il~~~~~~~---~~~~~vd~~~La~~t~g------- 1045 (1134)
++.||++|+.+ +.+++.+.+ ||.. .+.|++++.++..++++..+... ...++..++.++..+.+
T Consensus 159 ~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 236 (389)
T 1fnn_A 159 RIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTN 236 (389)
T ss_dssp CEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTT
T ss_pred CEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCC
Confidence 78888888888 557888887 8875 79999999999999999887641 12233446777777732
Q ss_pred -CcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhcCCCCc
Q 001162 1046 -FSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKARPSVS 1098 (1134)
Q Consensus 1046 -~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~~ps~~ 1098 (1134)
-..+.+.++|+.|...|..+ +...|+.+|+..++........
T Consensus 237 ~G~~r~~~~~l~~a~~~a~~~-----------~~~~i~~~~v~~~~~~~~~~~~ 279 (389)
T 1fnn_A 237 RGDARLAIDILYRSAYAAQQN-----------GRKHIAPEDVRKSSKEVLFGIS 279 (389)
T ss_dssp SCCHHHHHHHHHHHHHHHHHT-----------TCSSCCHHHHHHHHHHHSCCCC
T ss_pred CCcHHHHHHHHHHHHHHHHHh-----------CCCCcCHHHHHHHHHHHhhhhH
Confidence 24566777788777665432 2346889999988877655443
No 116
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=2.6e-13 Score=153.58 Aligned_cols=174 Identities=17% Similarity=0.171 Sum_probs=129.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc-----CCcEEEEeCcc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPE 913 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~-----~~~~i~i~~~e 913 (1134)
.+..|+++.|.+.+.+.+...+... +. .++||+||||||||++|+++|+.+ +.+++.+++++
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~~------------~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 82 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKDG------------NM-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD 82 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHSC------------CC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHcC------------CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc
Confidence 3467889999999999998886531 22 249999999999999999999986 45688888876
Q ss_pred cchhcccccHHHHHHHHHHhh-------hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEe
Q 001162 914 LLNKYIGASEQAVRDIFSKAT-------AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAA 986 (1134)
Q Consensus 914 l~~~~~G~se~~v~~lf~~A~-------~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIat 986 (1134)
.. ....++++++... .+.+.||||||+|.+. ....+.|+..++. ...++.+|++
T Consensus 83 ~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~--~~~~~~~il~ 143 (323)
T 1sxj_B 83 DR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT-----------AGAQQALRRTMEL--YSNSTRFAFA 143 (323)
T ss_dssp CC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC-----------HHHHHTTHHHHHH--TTTTEEEEEE
T ss_pred cc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCC-----------HHHHHHHHHHHhc--cCCCceEEEE
Confidence 32 2345666665543 3347899999999983 2345667777753 3356777778
Q ss_pred cCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCc
Q 001162 987 TSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFS 1047 (1134)
Q Consensus 987 Tn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~s 1047 (1134)
|+.++.+++++.+ |+. .+.|++|+.+++.++++.+++..++. ++..++.++..+.|..
T Consensus 144 ~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~ 202 (323)
T 1sxj_B 144 CNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDM 202 (323)
T ss_dssp ESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCH
T ss_pred eCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 8989999999998 665 88999999999999999887654433 2334667777776543
No 117
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.50 E-value=1.4e-13 Score=156.64 Aligned_cols=198 Identities=13% Similarity=0.196 Sum_probs=133.2
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhcc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIIS 669 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~ 669 (1134)
+.+++|+||||||||++++++++.+... ...+++++|..+.....+.........|.... ..+.+|||||+|.+.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSADDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSG 112 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccC
Confidence 4679999999999999999999988432 16788899987654333333221122232222 3478999999999852
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCC---CCChhhccCCCcc--ccccCCCCCHH
Q 001162 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFD--FHVQLPAPAAS 744 (1134)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~---~Ld~aL~~~gRF~--~~i~l~~P~~e 744 (1134)
. ......+...+ +...... ..+++++++.+. .++++|.+ ||. ..++|++ +.+
T Consensus 113 ~---------~~~~~~l~~~l----~~~~~~~-------~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~ 169 (324)
T 1l8q_A 113 K---------ERTQIEFFHIF----NTLYLLE-------KQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNK 169 (324)
T ss_dssp C---------HHHHHHHHHHH----HHHHHTT-------CEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHH
T ss_pred C---------hHHHHHHHHHH----HHHHHCC-------CeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHH
Confidence 1 11222333333 3222111 256667766665 68899998 885 5789999 999
Q ss_pred HHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcccccCCCcccccccccc-chhhhHhhhhcc
Q 001162 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTL-VRDDFSQAMHEF 823 (1134)
Q Consensus 745 eR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~l-t~eDf~~Al~~~ 823 (1134)
++.+|++..+...++.++++.+..++..+ | +.+++..++++++... ...+. ......+ +.+++.+++..+
T Consensus 170 e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~~-~~~l~------~~~~~~i~t~~~i~~~~~~~ 240 (324)
T 1l8q_A 170 TRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLKG-FEGLE------RKERKERDKLMQIVEFVANY 240 (324)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHHC-HHHHH------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHcC-HHHhc------cccccCCCCHHHHHHHHHHH
Confidence 99999999998888899999999999999 4 7889999988877650 00000 0011346 677777766554
No 118
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.50 E-value=4.2e-14 Score=146.27 Aligned_cols=151 Identities=25% Similarity=0.339 Sum_probs=112.2
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc----------CCcEEEEe
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~----------~~~~i~i~ 910 (1134)
..++++.|.+...+.+.+.+.. ....+++|+||||||||++|+++++.+ +.+++.++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred cccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 4688899999888887776642 224579999999999999999999987 78899998
Q ss_pred Ccccch--hcccccHHHHHHHHHHhhhc-CCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEec
Q 001162 911 GPELLN--KYIGASEQAVRDIFSKATAA-APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT 987 (1134)
Q Consensus 911 ~~el~~--~~~G~se~~v~~lf~~A~~~-~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatT 987 (1134)
+..+.. .+.|.....++.++..+... .|.||||||+|.+.+.+.... ....+.+.+...++ ...+++|++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~--~~~~~~~~l~~~~~----~~~~~ii~~~ 159 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAE--GALDAGNILKPMLA----RGELRCIGAT 159 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCT--TSCCTHHHHHHHHH----TTCSCEEEEE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccc--cchHHHHHHHHHHh----cCCeeEEEec
Confidence 877653 35566677788888877554 688999999999986543111 11233444444443 3567888888
Q ss_pred CCCC-----ccchhhcCcCcccceeecCCCC
Q 001162 988 SRPD-----LLDAALLRPGRLDRLLFCDFPS 1013 (1134)
Q Consensus 988 n~p~-----~ld~allrpgRfd~~i~~~~p~ 1013 (1134)
+.++ .+|+++++ ||+. +.+++|+
T Consensus 160 ~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 160 TVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp CHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred CHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 8775 48999999 9995 8898885
No 119
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=1.9e-13 Score=155.08 Aligned_cols=186 Identities=18% Similarity=0.232 Sum_probs=129.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcC-----CcEEEEeCcc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-----LRFISVKGPE 913 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~-----~~~i~i~~~e 913 (1134)
.+..|++++|.+++++.+...+... ...++||+||||||||++|+++|+.+. ..++.+++++
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKTG-------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHT-------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHcC-------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc
Confidence 4568999999999999998877531 123599999999999999999999863 4588888876
Q ss_pred cchhcccccHHHHHHHHHHh--hhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCC
Q 001162 914 LLNKYIGASEQAVRDIFSKA--TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPD 991 (1134)
Q Consensus 914 l~~~~~G~se~~v~~lf~~A--~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~ 991 (1134)
..+. ......+....... ....+.||||||+|.+. ....+.|+..|+. ...++.+|++|+.++
T Consensus 87 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~L~~~le~--~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 87 ERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALT-----------QDAQQALRRTMEM--FSSNVRFILSCNYSS 151 (327)
T ss_dssp HHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----------HHHHHHHHHHHHH--TTTTEEEEEEESCGG
T ss_pred cCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-----------HHHHHHHHHHHHh--cCCCCeEEEEeCCcc
Confidence 4321 11111222221111 11457899999999983 3456677777763 345677788899999
Q ss_pred ccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHH
Q 001162 992 LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLS 1056 (1134)
Q Consensus 992 ~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~ 1056 (1134)
.+++++.+ |+. .+.|++|+.++...+++..++..++. ++..++.++..+.| +.+.+.++++
T Consensus 152 ~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~ 213 (327)
T 1iqp_A 152 KIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQ 213 (327)
T ss_dssp GSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred ccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 99999998 776 78999999999999999988766543 33345667776654 3333334443
No 120
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.49 E-value=3.4e-13 Score=156.14 Aligned_cols=186 Identities=22% Similarity=0.263 Sum_probs=134.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC--------------
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL-------------- 904 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~-------------- 904 (1134)
.+..|++++|.+.+.+.+...+... +.+..+||+||+|||||++|+++|+.++.
T Consensus 11 rp~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 78 (373)
T 1jr3_A 11 RPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 78 (373)
T ss_dssp CCCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHH
T ss_pred CCCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 3467899999999999998887531 22346899999999999999999998753
Q ss_pred ----------cEEEEeCcccchhcccccHHHHHHHHHHhh----hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhh
Q 001162 905 ----------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLT 970 (1134)
Q Consensus 905 ----------~~i~i~~~el~~~~~G~se~~v~~lf~~A~----~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~ 970 (1134)
.++.+++..- .....++.+++.+. .+.+.||||||+|.+. ....+.|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~Ll~ 141 (373)
T 1jr3_A 79 CREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLK 141 (373)
T ss_dssp HHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-----------HHHHHHHHH
T ss_pred HHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-----------HHHHHHHHH
Confidence 2334433210 11234667777664 3456899999999982 346677887
Q ss_pred hcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHH
Q 001162 971 ELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGA 1049 (1134)
Q Consensus 971 ~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~ 1049 (1134)
.++. ...++++|++|+.++.+.+++.+ |+ ..+.|++|+.++...+++.++++.++. ++..+..++..+.| +.+
T Consensus 142 ~le~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r 215 (373)
T 1jr3_A 142 TLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLR 215 (373)
T ss_dssp HHHS--CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHH
T ss_pred HHhc--CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHH
Confidence 7763 34567888888888889999998 66 678999999999999999888765543 23336677888865 566
Q ss_pred HHHHHHHHHH
Q 001162 1050 DLQALLSDAQ 1059 (1134)
Q Consensus 1050 dl~~l~~~A~ 1059 (1134)
++.+++..+.
T Consensus 216 ~~~~~l~~~~ 225 (373)
T 1jr3_A 216 DALSLTDQAI 225 (373)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 121
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=2.8e-13 Score=155.62 Aligned_cols=215 Identities=20% Similarity=0.223 Sum_probs=144.9
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~ 631 (1134)
.+.++.|.+..++.+...+ . ...+.++||+||||||||++++++++.+.........+..++|+.
T Consensus 35 ~~~~i~g~~~~~~~l~~~l----~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTL----K-----------SANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp STTTCCSCCTTHHHHHHHT----T-----------CTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred CHHHhhCCHHHHHHHHHHH----h-----------cCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 4667888888887765543 1 111234999999999999999999998752211113567778776
Q ss_pred ccccchhhHHHHHHHHHHH------------HhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc
Q 001162 632 LSLEKGPIIRQALSNFISE------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE 699 (1134)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~------------a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~ 699 (1134)
..+ .+.+...+...... .....+.||||||+|.+.+ ...+.|...++....
T Consensus 100 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~---------------~~~~~Ll~~le~~~~ 162 (353)
T 1sxj_D 100 ERG--ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA---------------DAQSALRRTMETYSG 162 (353)
T ss_dssp CCC--HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH---------------HHHHHHHHHHHHTTT
T ss_pred ccc--hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH---------------HHHHHHHHHHHhcCC
Confidence 532 22222222222111 0112456999999999842 233456666665432
Q ss_pred ccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChh
Q 001162 700 KRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAY 779 (1134)
Q Consensus 700 ~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~ 779 (1134)
...+|.++|.+..+.+.+++ |+. .+.|++|+.++...++...+...++.++++.+..++..+.| +++
T Consensus 163 ---------~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r 229 (353)
T 1sxj_D 163 ---------VTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLR 229 (353)
T ss_dssp ---------TEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHH
T ss_pred ---------CceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHH
Confidence 35677788888899999998 876 88999999999999999988877888999999999999887 577
Q ss_pred hHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhh
Q 001162 780 DLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMH 821 (1134)
Q Consensus 780 DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~ 821 (1134)
.+.++++.+...+-.. .....++.+|+..++.
T Consensus 230 ~~~~~l~~~~~~~~~~----------~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 230 RGITLLQSASKGAQYL----------GDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHHTHHHHHHH----------CSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCC----------ccCccccHHHHHHHhC
Confidence 7777777665433211 0112477788776554
No 122
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.49 E-value=5.2e-14 Score=145.93 Aligned_cols=163 Identities=16% Similarity=0.269 Sum_probs=111.7
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc----eeeEEEEE
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFV 627 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~----~~~~~~~v 627 (1134)
.+.++.|.+..++.+.+.+.. ..+.++||+||||||||++++++++.+..... ....++++
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~---------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQR---------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS---------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred cccccccchHHHHHHHHHHhc---------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 356778888888887775421 23467999999999999999999998743110 12677888
Q ss_pred eccccc--ccchhhHHHHHHHHHHHHh-hcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccc
Q 001162 628 CCSRLS--LEKGPIIRQALSNFISEAL-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 704 (1134)
Q Consensus 628 ~~s~l~--~~~~~~~~~~l~~~f~~a~-~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~ 704 (1134)
+|..+. ....+.....+..++..+. ...+.||+|||+|.+.+.... ... . .+.+.+...++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~-~~~--~----~~~~~l~~~~~~-------- 149 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA-DGA--M----DAGNMLKPALAR-------- 149 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------C--C----CCHHHHHHHHHT--------
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc-cch--H----HHHHHHHHhhcc--------
Confidence 887765 3344556667777777654 355789999999999743211 111 1 123333333332
Q ss_pred cCCCcEEEEEecCCCC-----CCChhhccCCCccccccCCCCCHHHHHHHH
Q 001162 705 CGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAIL 750 (1134)
Q Consensus 705 ~~~~~V~vIattn~~~-----~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL 750 (1134)
+++.+|++++... .+++++.+ ||. .+++++|+.+++.+|+
T Consensus 150 ---~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 ---GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ---TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred ---CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 1367888888765 68999999 998 6999999999998876
No 123
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=2.4e-13 Score=157.59 Aligned_cols=220 Identities=16% Similarity=0.176 Sum_probs=147.2
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc------CCcEEEEeCcccch
Q 001162 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC------SLRFISVKGPELLN 916 (1134)
Q Consensus 843 ~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~------~~~~i~i~~~el~~ 916 (1134)
.+++.|.++..+.+.+.+..... -..+..++|+||+|||||++++++++.+ +..++.+++.....
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~ 89 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT 89 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC
Confidence 36789999988888877653211 1234579999999999999999999988 88999999764321
Q ss_pred ------h----------cccccHH-HHHHHHHHhhhc-CCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccccc
Q 001162 917 ------K----------YIGASEQ-AVRDIFSKATAA-APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVL 978 (1134)
Q Consensus 917 ------~----------~~G~se~-~v~~lf~~A~~~-~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~ 978 (1134)
. ..|.+.. ....+++..... .|+||||||++.+.... ...++..++..++.. ..
T Consensus 90 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~-------~~~~l~~l~~~~~~~-~~ 161 (386)
T 2qby_A 90 PYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY-------NDDILYKLSRINSEV-NK 161 (386)
T ss_dssp HHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS-------CSTHHHHHHHHHHSC-CC
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC-------cCHHHHHHhhchhhc-CC
Confidence 1 1222233 344455444433 48999999999986431 134566666666543 34
Q ss_pred ccEEEEEecCCCC---ccchhhcCcCccc-ceeecCCCCHHHHHHHHHHHHccCC---CCCcccHHHHHHhcc---CCcH
Q 001162 979 TGVFVFAATSRPD---LLDAALLRPGRLD-RLLFCDFPSPRERLDILKVISRKLP---LADDVDLEAIAHMTE---GFSG 1048 (1134)
Q Consensus 979 ~~v~vIatTn~p~---~ld~allrpgRfd-~~i~~~~p~~~er~~Il~~~~~~~~---~~~~vd~~~La~~t~---g~sg 1048 (1134)
.++.+|++|+.++ .+++.+.+ ||. ..+.|++++.+++.+|++..+.... ...+...+.++..+. |. .
T Consensus 162 ~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~-~ 238 (386)
T 2qby_A 162 SKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGD-A 238 (386)
T ss_dssp --EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCC-H
T ss_pred CeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCC-H
Confidence 5688888888774 47888888 775 4899999999999999998765321 112233556666665 43 4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhc
Q 001162 1049 ADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 1093 (1134)
Q Consensus 1049 ~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~ 1093 (1134)
+.+..+|..|+..|..+ +...|+.+|+..++...
T Consensus 239 r~~~~ll~~a~~~a~~~-----------~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 239 RRALDLLRVSGEIAERM-----------KDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp HHHHHHHHHHHHHHHHT-----------TCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-----------CCCccCHHHHHHHHHHH
Confidence 45556777776554321 23468999998887654
No 124
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.48 E-value=1.1e-13 Score=165.35 Aligned_cols=202 Identities=18% Similarity=0.141 Sum_probs=124.6
Q ss_pred CCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcC--CcEEEEeCc-----ccchh
Q 001162 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGP-----ELLNK 917 (1134)
Q Consensus 845 ~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~--~~~i~i~~~-----el~~~ 917 (1134)
.+.|.+++++.+...+.. +.++||+||||||||++|+++|..++ .+|..+++. ++++.
T Consensus 23 ~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 467888888777665432 24899999999999999999999884 355555553 33333
Q ss_pred cccccHHHHHHHHHHhhhc---CCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccc--------cccccEEEEEe
Q 001162 918 YIGASEQAVRDIFSKATAA---APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV--------EVLTGVFVFAA 986 (1134)
Q Consensus 918 ~~G~se~~v~~lf~~A~~~---~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~--------~~~~~v~vIat 986 (1134)
+.+..... ...|..+..+ .++|||||||+.+ ...+.+.|+..|+.- ...+..++|+|
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~-----------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~A 155 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAA 155 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGC-----------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh-----------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhc
Confidence 33322111 2234333322 4679999999876 356777888877521 11222345667
Q ss_pred cCCCCc---cchhhcCcCcccceeecCCCCH-HHHHHHHHHHHc-------------------------cCCCCCcccHH
Q 001162 987 TSRPDL---LDAALLRPGRLDRLLFCDFPSP-RERLDILKVISR-------------------------KLPLADDVDLE 1037 (1134)
Q Consensus 987 Tn~p~~---ld~allrpgRfd~~i~~~~p~~-~er~~Il~~~~~-------------------------~~~~~~~vd~~ 1037 (1134)
||.+.. ..+++++ ||...+.+++|+. +++..|++.... ...++++ -.+
T Consensus 156 TN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~-v~e 232 (500)
T 3nbx_X 156 SNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDH-VFE 232 (500)
T ss_dssp ESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHH-HHH
T ss_pred cccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchH-HHH
Confidence 775322 4468999 9999999999987 778888876432 1112111 133
Q ss_pred HHHHhc---------cCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHH
Q 001162 1038 AIAHMT---------EGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLK 1087 (1134)
Q Consensus 1038 ~La~~t---------~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~ 1087 (1134)
.++... .|.|.+.+.++++.|...|..+ ++..++.+|+.
T Consensus 233 ~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~-----------gr~~Vt~eDv~ 280 (500)
T 3nbx_X 233 LIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFS-----------GRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHT-----------TCSBCCGGGGG
T ss_pred HHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhc-----------CCccccchHHH
Confidence 343332 4788888888877665555432 23456666666
No 125
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=5e-13 Score=154.84 Aligned_cols=226 Identities=18% Similarity=0.215 Sum_probs=148.6
Q ss_pred cccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccc
Q 001162 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (1134)
Q Consensus 554 ~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~ 633 (1134)
..+.|.+..++.+.+.+...+. ...+.+++|+||+|||||++++++++.+.........+++++|....
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~-----------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYR-----------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGG-----------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred CCCCChHHHHHHHHHHHHHHHc-----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 5678888888887765533221 23356799999999999999999999874221001678888876432
Q ss_pred cc-----------------chhhHHHHHHHHHHHHhhc-CCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHH
Q 001162 634 LE-----------------KGPIIRQALSNFISEALDH-APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMD 695 (1134)
Q Consensus 634 ~~-----------------~~~~~~~~l~~~f~~a~~~-~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld 695 (1134)
.. ........+..++...... .|.+|+|||+|.+..... . .+...+...++
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-------~----~~l~~l~~~~~ 157 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-------D----DILYKLSRINS 157 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-------S----THHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-------C----HHHHHHhhchh
Confidence 10 0001223334444443333 389999999999863210 1 23334444444
Q ss_pred HhccccccccCCCcEEEEEecCCC---CCCChhhccCCCcc-ccccCCCCCHHHHHHHHHHHhhhc--ccCCCHHHHHHH
Q 001162 696 EYGEKRKSSCGIGPIAFVASAQSL---EKIPQSLTSSGRFD-FHVQLPAPAASERKAILEHEIQRR--SLECSDEILLDV 769 (1134)
Q Consensus 696 ~~~~~~~~~~~~~~V~vIattn~~---~~Ld~aL~~~gRF~-~~i~l~~P~~eeR~~IL~~~l~~~--~l~~~~~~l~~l 769 (1134)
.... .++.+|++++.. +.+++.+.+ ||. ..++|++++.+++.+|+...+... ...++++.+..+
T Consensus 158 ~~~~--------~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l 227 (386)
T 2qby_A 158 EVNK--------SKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLC 227 (386)
T ss_dssp SCCC----------EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHH
T ss_pred hcCC--------CeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHH
Confidence 3211 148888888876 457778877 665 489999999999999999877642 246788888888
Q ss_pred hhhcC---CCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhcc
Q 001162 770 ASKCD---GYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1134)
Q Consensus 770 a~~te---G~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1134)
+..+. | +++.+..+++++...+... ....++.+++..++...
T Consensus 228 ~~~~~~~~G-~~r~~~~ll~~a~~~a~~~-----------~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 228 AALAAREHG-DARRALDLLRVSGEIAERM-----------KDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp HHHHHHTTC-CHHHHHHHHHHHHHHHHHT-----------TCSSCCHHHHHHHHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHhc-----------CCCccCHHHHHHHHHHH
Confidence 88876 5 6777778888887655432 22458888888877654
No 126
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.47 E-value=1.3e-12 Score=151.96 Aligned_cols=224 Identities=14% Similarity=0.094 Sum_probs=150.4
Q ss_pred cccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCc--eEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 001162 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPG--HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1134)
Q Consensus 554 ~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~--~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~ 631 (1134)
..+.|.+..++.+.+.+..... ...+. +++|+||||||||++++++++.+.... ...+++++|..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~-----------~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~i~~~~ 83 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLR-----------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT--TARFVYINGFI 83 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHH-----------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC--CCEEEEEETTT
T ss_pred CCCCChHHHHHHHHHHHHHHHc-----------CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc--CeeEEEEeCcc
Confidence 5688899999998888765432 12223 799999999999999999999985331 25688889866
Q ss_pred ccccc-----------------hhhHHHHHHHHHHHHh-hcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001162 632 LSLEK-----------------GPIIRQALSNFISEAL-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1134)
Q Consensus 632 l~~~~-----------------~~~~~~~l~~~f~~a~-~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1134)
..... .......+..+..... ...|.+|+|||+|.+. ......|...
T Consensus 84 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~---------------~~~~~~L~~~ 148 (389)
T 1fnn_A 84 YRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA---------------PDILSTFIRL 148 (389)
T ss_dssp CCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC---------------HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc---------------hHHHHHHHHH
Confidence 43210 0011111222222221 2458899999999872 1344445555
Q ss_pred HHHhccccccccCCCcEEEEEecCCC---CCCChhhccCCCccc-cccCCCCCHHHHHHHHHHHhhhc--ccCCCHHHHH
Q 001162 694 MDEYGEKRKSSCGIGPIAFVASAQSL---EKIPQSLTSSGRFDF-HVQLPAPAASERKAILEHEIQRR--SLECSDEILL 767 (1134)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~---~~Ld~aL~~~gRF~~-~i~l~~P~~eeR~~IL~~~l~~~--~l~~~~~~l~ 767 (1134)
++.+.... ..++.+|++++.+ +.+++.+.+ ||.. .++|++++.++..+++...+... ...++++.+.
T Consensus 149 ~~~~~~~~-----~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 221 (389)
T 1fnn_A 149 GQEADKLG-----AFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQ 221 (389)
T ss_dssp TTCHHHHS-----SCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHH
T ss_pred HHhCCCCC-----cCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHH
Confidence 44332100 0147888888877 567888877 7764 79999999999999999887642 2357889999
Q ss_pred HHhhhcC--------CCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhcc
Q 001162 768 DVASKCD--------GYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1134)
Q Consensus 768 ~la~~te--------G~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1134)
.++..+. +.+++.+..+++.+...+..+ ....++.+++..++...
T Consensus 222 ~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~-----------~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 222 MIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQN-----------GRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp HHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHT-----------TCSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHh-----------CCCCcCHHHHHHHHHHH
Confidence 9999884 236788888888887766433 22457788888776554
No 127
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.47 E-value=3.7e-13 Score=156.52 Aligned_cols=220 Identities=19% Similarity=0.191 Sum_probs=136.7
Q ss_pred CCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccc-cchh-hHHHHHHHHHHHHh----hcCCeEEEE
Q 001162 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL-EKGP-IIRQALSNFISEAL----DHAPSIVIF 661 (1134)
Q Consensus 588 ~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~-~~~~-~~~~~l~~~f~~a~----~~~PsIL~I 661 (1134)
.++.++||+||||||||++|+++|+.++ .+++.++|..+.. .+.+ .....+..++..+. ...++||||
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l~------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~i 143 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHLD------IPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFI 143 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTT------CCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEE
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHhC------CCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEE
Confidence 3456799999999999999999999986 6788899988752 2222 22344555554432 236789999
Q ss_pred cccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc----ccccc--------ccCCCcEEEEEecCC-----------
Q 001162 662 DNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKS--------SCGIGPIAFVASAQS----------- 718 (1134)
Q Consensus 662 DEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~--------~~~~~~V~vIattn~----------- 718 (1134)
||+|.+...+...... .......+.+.|+..++... ..... .....++.+|+++|.
T Consensus 144 DEi~~l~~~~~~~~~~-~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~ 222 (376)
T 1um8_A 144 DEIDKISRLSENRSIT-RDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRT 222 (376)
T ss_dssp ETGGGC---------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSC
T ss_pred cCHHHHhhhcCCCcee-cccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHh
Confidence 9999997532211100 00111135667777777421 00000 011234677777762
Q ss_pred ------------------------------CCCCChhhccCCCccccccCCCCCHHHHHHHHHH----Hhh---------
Q 001162 719 ------------------------------LEKIPQSLTSSGRFDFHVQLPAPAASERKAILEH----EIQ--------- 755 (1134)
Q Consensus 719 ------------------------------~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~----~l~--------- 755 (1134)
...+.+.|.+ ||+..+.|++++.++..+|+.. ++.
T Consensus 223 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~ 300 (376)
T 1um8_A 223 TQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMD 300 (376)
T ss_dssp SSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTT
T ss_pred cccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 0124566676 8888899999999999999862 211
Q ss_pred hcccCCCHHHHHHHhhhcC--CCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhh
Q 001162 756 RRSLECSDEILLDVASKCD--GYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMH 821 (1134)
Q Consensus 756 ~~~l~~~~~~l~~la~~te--G~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~ 821 (1134)
+..+.++++++..++.... .+..+.+..++++++..++.+.... ......++.+++..+.+
T Consensus 301 ~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~-----~~~~~~i~~~~v~~~~~ 363 (376)
T 1um8_A 301 EVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKL-----KGSEVRITKDCVLKQAE 363 (376)
T ss_dssp TCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGG-----TTSEEEECHHHHTTSSC
T ss_pred CceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHhhccCC-----CCCEEEEeHHHhcCCCC
Confidence 1245688999999988754 4679999999999998877664321 11234578888765443
No 128
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.46 E-value=7.7e-14 Score=166.90 Aligned_cols=191 Identities=16% Similarity=0.215 Sum_probs=133.3
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc----eeeEEEEE
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFV 627 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~----~~~~~~~v 627 (1134)
.++.++|.+..+..+++.+.. ..+.++||+||||||||++|+++|+.+..... ....++.+
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r---------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSR---------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHC---------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCCccCcHHHHHHHHHHHhc---------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 466789999988887775532 22367999999999999999999999843211 12567778
Q ss_pred ecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCC
Q 001162 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1134)
Q Consensus 628 ~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1134)
+|. +.+.+.....+..+|..+....|.||||| . . . ...+.|...++ .
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~--------~--~----~a~~~L~~~L~-----------~ 289 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A--------A--I----DASNILKPSLA-----------R 289 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------CCCTT-----------S
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C--------c--h----hHHHHHHHhhc-----------C
Confidence 877 44455556677888888888889999999 1 0 0 11222222221 1
Q ss_pred CcEEEEEecCCCC-----CCChhhccCCCccccccCCCCCHHHHHHHHHHHhhh----cccCCCHHHHHHHhhhcCCCC-
Q 001162 708 GPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDGYD- 777 (1134)
Q Consensus 708 ~~V~vIattn~~~-----~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~----~~l~~~~~~l~~la~~teG~s- 777 (1134)
+.+.+|++||..+ .++++|++ ||. .+.|+.|+.+++.+||+.++.. +++.++++.+..++..+.+|.
T Consensus 290 g~v~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~ 366 (468)
T 3pxg_A 290 GELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYIS 366 (468)
T ss_dssp SSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSC
T ss_pred CCEEEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc
Confidence 2488999999887 58999999 998 6999999999999999987765 567789999988888776654
Q ss_pred ----hhhHHHHHHHHHHHHh
Q 001162 778 ----AYDLEILVDRTVHAAV 793 (1134)
Q Consensus 778 ----~~DL~~Lv~~a~~~a~ 793 (1134)
+.....+++.|+..+.
T Consensus 367 ~~~lp~~ai~ll~~a~~~~~ 386 (468)
T 3pxg_A 367 DRFLPDKAIDLIDEAGSKVR 386 (468)
T ss_dssp CSCTTHHHHHHHHHHHHHHH
T ss_pred cCcCCcHHHHHHHHHHHHHH
Confidence 4477788888775443
No 129
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.46 E-value=2e-12 Score=147.86 Aligned_cols=217 Identities=18% Similarity=0.228 Sum_probs=143.2
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccc
Q 001162 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (1134)
Q Consensus 553 ~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l 632 (1134)
+...+|.+..++.+...+..... ...++.+++|+||||+|||||++++|+.++ ..+...++.-+
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~----------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~------~~~~~~sg~~~ 87 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKM----------RGEVLDHVLLAGPPGLGKTTLAHIIASELQ------TNIHVTSGPVL 87 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHH----------HTCCCCCEEEESSTTSSHHHHHHHHHHHHT------CCEEEEETTTC
T ss_pred HHHccCcHHHHHHHHHHHHHHHh----------cCCCCCeEEEECCCCCcHHHHHHHHHHHhC------CCEEEEechHh
Confidence 44556666555554443322110 023346799999999999999999999986 33344443332
Q ss_pred cccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc-----ccc----
Q 001162 633 SLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK-----RKS---- 703 (1134)
Q Consensus 633 ~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~-----~~~---- 703 (1134)
.. ... +...+.. ...+.|+||||+|.+.+ ...+.|...++..... ...
T Consensus 88 ~~--~~~----l~~~~~~--~~~~~v~~iDE~~~l~~---------------~~~e~L~~~~~~~~~~i~~~~~~~~~~i 144 (334)
T 1in4_A 88 VK--QGD----MAAILTS--LERGDVLFIDEIHRLNK---------------AVEELLYSAIEDFQIDIMIGKGPSAKSI 144 (334)
T ss_dssp CS--HHH----HHHHHHH--CCTTCEEEEETGGGCCH---------------HHHHHHHHHHHTSCCCC-----------
T ss_pred cC--HHH----HHHHHHH--ccCCCEEEEcchhhcCH---------------HHHHHHHHHHHhcccceeeccCcccccc
Confidence 21 112 2222222 13467999999998852 1222333333322100 000
Q ss_pred ccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHH
Q 001162 704 SCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEI 783 (1134)
Q Consensus 704 ~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~ 783 (1134)
......+.++++++.+..+++.+++ ||...+.|++|+.+++.+|++......++.++++.+..++..+.| +++++..
T Consensus 145 ~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ 221 (334)
T 1in4_A 145 RIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIR 221 (334)
T ss_dssp ----CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHH
T ss_pred cccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHH
Confidence 0011246788899999999999999 998788999999999999999988777788999999999999888 6789999
Q ss_pred HHHHHHHHHhcccccCCCccccccccccchhhhHhhhhc
Q 001162 784 LVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1134)
Q Consensus 784 Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1134)
+++++...+..+ ....++.+++..++..
T Consensus 222 ll~~~~~~a~~~-----------~~~~It~~~v~~al~~ 249 (334)
T 1in4_A 222 LTKRVRDMLTVV-----------KADRINTDIVLKTMEV 249 (334)
T ss_dssp HHHHHHHHHHHH-----------TCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-----------CCCCcCHHHHHHHHHH
Confidence 999887666432 1235788888877765
No 130
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=3.7e-13 Score=163.01 Aligned_cols=203 Identities=17% Similarity=0.223 Sum_probs=131.7
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCchhhhhhcCC---CCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEE
Q 001162 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHL---PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (1134)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~---~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v 627 (1134)
.++.+++|.+..++.+.+.+...... .+..+...+. ++++++||+||||||||++|+++|++++ ..++++
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~-~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~------~~~i~i 108 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENS-KKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG------YDILEQ 108 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHH-HHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT------CEEEEE
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhh-chhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC------CCEEEE
Confidence 35778999999999888877542210 0011122222 3567899999999999999999999986 788999
Q ss_pred ecccccccchhhHHHH---------HHHHHHHH-----hhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001162 628 CCSRLSLEKGPIIRQA---------LSNFISEA-----LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1134)
Q Consensus 628 ~~s~l~~~~~~~~~~~---------l~~~f~~a-----~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1134)
+|+.+...... ... +..+|..+ ....+.||||||+|.+... . . .....|...
T Consensus 109 n~s~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~------~--~----~~l~~L~~~ 174 (516)
T 1sxj_A 109 NASDVRSKTLL--NAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG------D--R----GGVGQLAQF 174 (516)
T ss_dssp CTTSCCCHHHH--HHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTT------S--T----THHHHHHHH
T ss_pred eCCCcchHHHH--HHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchh------h--H----HHHHHHHHH
Confidence 99887643211 111 11122222 1246789999999998631 0 0 123344444
Q ss_pred HHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhc
Q 001162 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1134)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~t 773 (1134)
++... .++++|+++.....+++ ++ |+...+.|++|+.+++.+++...+...++.++++.+..++..+
T Consensus 175 l~~~~---------~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s 241 (516)
T 1sxj_A 175 CRKTS---------TPLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTT 241 (516)
T ss_dssp HHHCS---------SCEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHT
T ss_pred HHhcC---------CCEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 44321 13555555444334433 44 4455899999999999999999888878889999999999988
Q ss_pred CCCChhhHHHHHHHH
Q 001162 774 DGYDAYDLEILVDRT 788 (1134)
Q Consensus 774 eG~s~~DL~~Lv~~a 788 (1134)
.| +.+.+.++++.+
T Consensus 242 ~G-diR~~i~~L~~~ 255 (516)
T 1sxj_A 242 RG-DIRQVINLLSTI 255 (516)
T ss_dssp TT-CHHHHHHHHTHH
T ss_pred CC-cHHHHHHHHHHH
Confidence 76 445555555443
No 131
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.44 E-value=1e-12 Score=148.99 Aligned_cols=192 Identities=19% Similarity=0.231 Sum_probs=135.4
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~ 631 (1134)
.+.+++|.+..++.+.+.+..- . ..++||+||||||||++++++++.+.... ....++.++|+.
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~--------------~-~~~~ll~G~~G~GKT~la~~l~~~l~~~~-~~~~~~~~~~~~ 86 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTG--------------S-MPHLLFAGPPGVGKTTAALALARELFGEN-WRHNFLELNASD 86 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHT--------------C-CCEEEEESCTTSSHHHHHHHHHHHHHGGG-HHHHEEEEETTC
T ss_pred CHHHhhCCHHHHHHHHHHHHcC--------------C-CCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCceEEeeccc
Confidence 4667888888888777655321 1 23599999999999999999999874321 124467777765
Q ss_pred ccccchhhHHHHHHHHHHHH--hhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 632 LSLEKGPIIRQALSNFISEA--LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a--~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
..+ .......+....... ....+.+++|||+|.+.+ ...+.|...++.... .
T Consensus 87 ~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~L~~~le~~~~---------~ 140 (327)
T 1iqp_A 87 ERG--INVIREKVKEFARTKPIGGASFKIIFLDEADALTQ---------------DAQQALRRTMEMFSS---------N 140 (327)
T ss_dssp HHH--HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH---------------HHHHHHHHHHHHTTT---------T
T ss_pred cCc--hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH---------------HHHHHHHHHHHhcCC---------C
Confidence 432 122222233222111 113578999999999841 234455666665332 3
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
+.+|++++.+..+.+.+.+ |+. .+.|++|+.++..++++..+...++.++++.+..++..+.| +++.+..+++.+.
T Consensus 141 ~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 141 VRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp EEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 7788889998899999998 876 88999999999999999998888888999999999998876 6666666666543
No 132
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.44 E-value=7.7e-13 Score=151.82 Aligned_cols=144 Identities=16% Similarity=0.192 Sum_probs=97.6
Q ss_pred CCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHh----ccccccccCCCcEEEEEecCCCC-CCChhhccC
Q 001162 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY----GEKRKSSCGIGPIAFVASAQSLE-KIPQSLTSS 729 (1134)
Q Consensus 655 ~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~----~~~~~~~~~~~~V~vIattn~~~-~Ld~aL~~~ 729 (1134)
.+++|||||+|.+.+ .....|...++.- ...........++++|+++|..+ .++++|.+
T Consensus 144 ~~~vl~iDEi~~l~~---------------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~- 207 (350)
T 1g8p_A 144 NRGYLYIDECNLLED---------------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD- 207 (350)
T ss_dssp TTEEEEETTGGGSCH---------------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT-
T ss_pred CCCEEEEeChhhCCH---------------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh-
Confidence 368999999999841 3344555555541 11111111112589999999754 79999999
Q ss_pred CCccccccCCCC-CHHHHHHHHHHHh-----------------------------hhcccCCCHHHHHHHhhhcCCC---
Q 001162 730 GRFDFHVQLPAP-AASERKAILEHEI-----------------------------QRRSLECSDEILLDVASKCDGY--- 776 (1134)
Q Consensus 730 gRF~~~i~l~~P-~~eeR~~IL~~~l-----------------------------~~~~l~~~~~~l~~la~~teG~--- 776 (1134)
||+.++++++| +.+++.+|++..+ ....+.++++++..++....+.
T Consensus 208 -R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~ 286 (350)
T 1g8p_A 208 -RFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSD 286 (350)
T ss_dssp -TCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSC
T ss_pred -hcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 99888999999 6778878886621 1123468898888888776543
Q ss_pred ChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhccccc
Q 001162 777 DAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1134)
Q Consensus 777 s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~ 826 (1134)
+.+.+..+++.|...|..+ +...++.+|+..++......
T Consensus 287 ~~R~~~~ll~~a~~~A~~~-----------~~~~v~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 287 GLRGELTLLRSARALAALE-----------GATAVGRDHLKRVATMALSH 325 (350)
T ss_dssp SHHHHHHHHHHHHHHHHHT-----------TCSBCCHHHHHHHHHHHHGG
T ss_pred CccHHHHHHHHHHHHHHHc-----------CCCcCCHHHHHHHHHHHHhh
Confidence 5688889998887666433 22458889998887665444
No 133
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.44 E-value=1.2e-12 Score=181.28 Aligned_cols=336 Identities=14% Similarity=0.172 Sum_probs=183.2
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHh----h--------cCCe
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----D--------HAPS 657 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~----~--------~~Ps 657 (1134)
..++||+||||||||++++.....+. . ..++.++|+.-... ..+.+.+...++... + .+..
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~---~--~~~~~infS~~Tta--~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFP---D--FEVVSLNFSSATTP--ELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCT---T--EEEEEECCCTTCCH--HHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCC---C--CceEEEEeeCCCCH--HHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 36799999999999988866554332 1 45677888764431 222222221111000 0 1124
Q ss_pred EEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHH---hccccccccCCCcEEEEEecCCC-----CCCChhhccC
Q 001162 658 IVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE---YGEKRKSSCGIGPIAFVASAQSL-----EKIPQSLTSS 729 (1134)
Q Consensus 658 IL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~---~~~~~~~~~~~~~V~vIattn~~-----~~Ld~aL~~~ 729 (1134)
|+||||++... .+..|++ .....|..++|. +......+....++.+|||+|++ ..++++|.|
T Consensus 1377 VlFiDDiNmp~---~D~yGtQ------~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r- 1446 (3245)
T 3vkg_A 1377 VVFCDEINLPS---TDKYGTQ------RVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR- 1446 (3245)
T ss_dssp EEEETTTTCCC---CCTTSCC------HHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT-
T ss_pred EEEecccCCCC---ccccccc------cHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh-
Confidence 99999998643 3444444 344555555554 22222233344578999999987 468999998
Q ss_pred CCccccccCCCCCHHHHHHHHHHHhhhcc-----c-CCCHHHHH-------HH-------hhhcCCCChhhHHHHHHHHH
Q 001162 730 GRFDFHVQLPAPAASERKAILEHEIQRRS-----L-ECSDEILL-------DV-------ASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 730 gRF~~~i~l~~P~~eeR~~IL~~~l~~~~-----l-~~~~~~l~-------~l-------a~~teG~s~~DL~~Lv~~a~ 789 (1134)
||. .+.++.|+.++...|+..++.... + .+.+.... .+ ++...-|+.||+..+++..+
T Consensus 1447 -~F~-vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll 1524 (3245)
T 3vkg_A 1447 -HAP-ILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALL 1524 (3245)
T ss_dssp -TCC-EEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHH
T ss_pred -hce-EEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHH
Confidence 887 699999999999999877654321 0 01122111 11 11134578999988877655
Q ss_pred HHHhcccccCCCcc---------ccccccccchhh-------hHhhhhccccceecccccccc----CCCCCCCCCCCCh
Q 001162 790 HAAVGRYLHSDSSF---------EKHIKPTLVRDD-------FSQAMHEFLPVAMRDITKTSA----EGGRSGWDDVGGL 849 (1134)
Q Consensus 790 ~~a~~r~~~~~~~~---------~~~~~~~lt~eD-------f~~Al~~~~P~~lr~v~~~~~----~~~~~~~~~i~gl 849 (1134)
.............. .--.+.-++.+| +...+....+...... ...+ ......+.++ ..
T Consensus 1525 ~~~~~~~~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~~~~~~~F~~~~~~~-~~~pllf~~f~~~~Y~~v-~~ 1602 (3245)
T 3vkg_A 1525 EAIQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPSVNLDA-LKRPILYSNWLTKDYQPV-NR 1602 (3245)
T ss_dssp HHHHTSSCCCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHCTTSCGGG-GCSSCCCCSSCC----CC-CH
T ss_pred HhcCccccCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcchhhh-cccCcchhhhccccCccC-CH
Confidence 43111000000000 000001112222 2222222222110000 0000 0001123344 45
Q ss_pred hHHHHHHHHHHhcCC---------------CchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCccc
Q 001162 850 TDIQNAIKEMIELPS---------------KFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL 914 (1134)
Q Consensus 850 ~~~k~~l~~~i~~~~---------------~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el 914 (1134)
+++++.+.+.+.... .|--...+.-..|++|+||.|..|+||++++|..|..+|..++.+..+.-
T Consensus 1603 ~~l~~~l~~~L~~yn~~~~~m~LVlF~daleHv~RI~RIL~qp~GhaLLVGvgGSGkqSLtrLAa~i~~~~vfqi~i~k~ 1682 (3245)
T 3vkg_A 1603 SDLREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNN 1682 (3245)
T ss_dssp HHHHHHHHHHHHTTC------CCCCCHHHHHHHHHHHHHHTSTTCCEEEEESTTSSHHHHHHHHHHHTTCEEECCC----
T ss_pred HHHHHHHHHHHHHHHhcccCceEEeHHHHHHHHHHHHHHHccCCCCeEEecCCCCcHHHHHHHHHHHhCCeeEEEeeeCC
Confidence 666766666554211 11111222233578899999999999999999999999999999877653
Q ss_pred chhcccccHHHHHHHHHHh-hhcCCeEEEEcCccc
Q 001162 915 LNKYIGASEQAVRDIFSKA-TAAAPCLLFFDEFDS 948 (1134)
Q Consensus 915 ~~~~~G~se~~v~~lf~~A-~~~~P~VLfiDEid~ 948 (1134)
++ ..+-...++.++..| -.++|.+++|+|.+-
T Consensus 1683 Y~--~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi 1715 (3245)
T 3vkg_A 1683 YK--SSDFDDDLRMLLKRAGCKEEKICFIFDESNV 1715 (3245)
T ss_dssp CC--HHHHHHHHHHHHHHHHTSCCCEEEEEEGGGC
T ss_pred CC--HHHHHHHHHHHHHHHhcCCCCEEEEEecccc
Confidence 22 233457789999988 456788888987653
No 134
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.43 E-value=2.2e-12 Score=149.21 Aligned_cols=191 Identities=17% Similarity=0.245 Sum_probs=134.7
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCcee----------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV---------- 621 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~---------- 621 (1134)
.+.+++|.+..++.+.+.+.. ...+..+||+||+|||||++++++++.+.......
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~--------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 79 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSL--------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHH--------------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHH
T ss_pred chhhccCcHHHHHHHHHHHHh--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 356788888888877776532 12235689999999999999999999986422100
Q ss_pred --------eEEEEEecccccccchhhHHHHHHHHHHHHh----hcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHH
Q 001162 622 --------AHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKF 689 (1134)
Q Consensus 622 --------~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~----~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~ 689 (1134)
..+..+++..- ..... ++.++..+. ...+.|++|||+|.+.. ...+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~--~~~~~----~~~l~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~ 138 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAASR--TKVED----TRDLLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFNA 138 (373)
T ss_dssp HHHHTSCCSSCEEEETTCS--CCSSC----HHHHHHHTTSCCSSSSSEEEEEECGGGSCH---------------HHHHH
T ss_pred HHHhccCCCceEEeccccc--CCHHH----HHHHHHHHhhccccCCeEEEEEECcchhcH---------------HHHHH
Confidence 01233333321 11222 334444433 23468999999999841 23344
Q ss_pred HHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHH
Q 001162 690 LVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDV 769 (1134)
Q Consensus 690 L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~l 769 (1134)
|...++... ..+.+|++++.+..+.+.+.+ |+ ..+.|++|+.+++.++++..+...++.++++.+..+
T Consensus 139 Ll~~le~~~---------~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l 206 (373)
T 1jr3_A 139 LLKTLEEPP---------EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 (373)
T ss_dssp HHHHHHSCC---------SSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHH
T ss_pred HHHHHhcCC---------CceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 555555432 147888888888889999988 76 489999999999999999998888888999999999
Q ss_pred hhhcCCCChhhHHHHHHHHHH
Q 001162 770 ASKCDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 770 a~~teG~s~~DL~~Lv~~a~~ 790 (1134)
+..+.| +++++..+++++..
T Consensus 207 ~~~~~G-~~r~~~~~l~~~~~ 226 (373)
T 1jr3_A 207 ARAAEG-SLRDALSLTDQAIA 226 (373)
T ss_dssp HHHSSS-CHHHHHHHHHHHHH
T ss_pred HHHCCC-CHHHHHHHHHHHHH
Confidence 999977 78888888887753
No 135
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.42 E-value=2.3e-12 Score=147.01 Aligned_cols=217 Identities=14% Similarity=0.142 Sum_probs=137.9
Q ss_pred cccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc--
Q 001162 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR-- 631 (1134)
Q Consensus 554 ~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~-- 631 (1134)
..+.|.+..+..+...+.. ++++||+||||||||++|+++|+.++ ..+..++|..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~-----------------~~~vll~G~pGtGKT~la~~la~~~~------~~~~~i~~~~~~ 83 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICT-----------------GGHILLEGVPGLAKTLSVNTLAKTMD------LDFHRIQFTPDL 83 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHH-----------------TCCEEEESCCCHHHHHHHHHHHHHTT------CCEEEEECCTTC
T ss_pred cceeCcHHHHHHHHHHHHc-----------------CCeEEEECCCCCcHHHHHHHHHHHhC------CCeEEEecCCCC
Confidence 4566777766665544321 25799999999999999999999986 4566676632
Q ss_pred ----ccccchhhHHHHHHHHHHHHhhcC---CeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc--cc
Q 001162 632 ----LSLEKGPIIRQALSNFISEALDHA---PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK--RK 702 (1134)
Q Consensus 632 ----l~~~~~~~~~~~l~~~f~~a~~~~---PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~--~~ 702 (1134)
+.+....... ...+ ..... .+||||||+|.+.+ .....|...++...-. ..
T Consensus 84 ~~~~l~g~~~~~~~---~~~~--~~~~g~l~~~vl~iDEi~~~~~---------------~~~~~Ll~~l~~~~~~~~g~ 143 (331)
T 2r44_A 84 LPSDLIGTMIYNQH---KGNF--EVKKGPVFSNFILADEVNRSPA---------------KVQSALLECMQEKQVTIGDT 143 (331)
T ss_dssp CHHHHHEEEEEETT---TTEE--EEEECTTCSSEEEEETGGGSCH---------------HHHHHHHHHHHHSEEEETTE
T ss_pred ChhhcCCceeecCC---CCce--EeccCcccccEEEEEccccCCH---------------HHHHHHHHHHhcCceeeCCE
Confidence 1111000000 0000 00012 26999999998731 3445556666543210 00
Q ss_pred cccCCCcEEEEEecCCCC-----CCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhc--------------------
Q 001162 703 SSCGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRR-------------------- 757 (1134)
Q Consensus 703 ~~~~~~~V~vIattn~~~-----~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~-------------------- 757 (1134)
......++++|+|+|+.+ .++++|++ ||..++.+++|+.+++.+|++..+...
T Consensus 144 ~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~ 221 (331)
T 2r44_A 144 TYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNE 221 (331)
T ss_dssp EEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHH
T ss_pred EEECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHH
Confidence 011122578888888654 38999999 998889999999999999999876542
Q ss_pred --ccCCCHHHHHHHhhhc-------------------CCCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhh
Q 001162 758 --SLECSDEILLDVASKC-------------------DGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDF 816 (1134)
Q Consensus 758 --~l~~~~~~l~~la~~t-------------------eG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf 816 (1134)
++.++++.+..++... .|.+++.+..+++.|...|..+ +...++.+|+
T Consensus 222 ~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~-----------g~~~v~~~dv 290 (331)
T 2r44_A 222 INKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFN-----------NRDYVLPEDI 290 (331)
T ss_dssp HHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHT-----------TCSBCCHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHc-----------CCCCCCHHHH
Confidence 4557777776665432 2558888888888776555432 2245788999
Q ss_pred Hhhhhccccc
Q 001162 817 SQAMHEFLPV 826 (1134)
Q Consensus 817 ~~Al~~~~P~ 826 (1134)
..++......
T Consensus 291 ~~~~~~vl~~ 300 (331)
T 2r44_A 291 KEVAYDILNH 300 (331)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhHh
Confidence 8887665443
No 136
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.42 E-value=3e-12 Score=144.86 Aligned_cols=192 Identities=20% Similarity=0.240 Sum_probs=134.3
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~ 631 (1134)
.+.++.|.+..++.+.+.+.. ...+ ++||+||+|+|||++++++++.+.... ....+++++++.
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~--------------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~ 82 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKD--------------GNMP-HMIISGMPGIGKTTSVHCLAHELLGRS-YADGVLELNASD 82 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHS--------------CCCC-CEEEECSTTSSHHHHHHHHHHHHHGGG-HHHHEEEECTTS
T ss_pred CHHHHHCCHHHHHHHHHHHHc--------------CCCC-eEEEECcCCCCHHHHHHHHHHHhcCCc-ccCCEEEecCcc
Confidence 356778888888877665422 1223 399999999999999999999874221 124567778766
Q ss_pred ccccchhhHHHHHHHHHHH--Hh-hcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCC
Q 001162 632 LSLEKGPIIRQALSNFISE--AL-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1134)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~--a~-~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1134)
..+ ...++..+..+... .. ...+.+++|||+|.+.. ...+.|...++....
T Consensus 83 ~~~--~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~---------------~~~~~L~~~le~~~~--------- 136 (323)
T 1sxj_B 83 DRG--IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA---------------GAQQALRRTMELYSN--------- 136 (323)
T ss_dssp CCS--HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH---------------HHHHTTHHHHHHTTT---------
T ss_pred ccC--hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH---------------HHHHHHHHHHhccCC---------
Confidence 432 23333333222211 01 23478999999999842 223445555555321
Q ss_pred cEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHH
Q 001162 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1134)
Q Consensus 709 ~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a 788 (1134)
.+.+|++++.+..+.+.+.+ |+. .+.|++|+.+++.+++...+...++.++++.+..++..+.| +++.+..+++.+
T Consensus 137 ~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~ 212 (323)
T 1sxj_B 137 STRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQST 212 (323)
T ss_dssp TEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred CceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 36788888988999999998 765 89999999999999999988877888999999999998877 566666666655
Q ss_pred H
Q 001162 789 V 789 (1134)
Q Consensus 789 ~ 789 (1134)
.
T Consensus 213 ~ 213 (323)
T 1sxj_B 213 V 213 (323)
T ss_dssp H
T ss_pred H
Confidence 4
No 137
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.42 E-value=2.1e-12 Score=148.61 Aligned_cols=189 Identities=15% Similarity=0.203 Sum_probs=127.2
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHH-hcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc-CC----------
Q 001162 837 EGGRSGWDDVGGLTDIQNAIKEMI-ELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-SL---------- 904 (1134)
Q Consensus 837 ~~~~~~~~~i~gl~~~k~~l~~~i-~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~-~~---------- 904 (1134)
++.+..|++++|.+.+.+.+...+ .. + +.+ +++|+||+|||||++++++|+++ +.
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~~~-----------~-~~~-~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSDQP-----------R-DLP-HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTTCT-----------T-CCC-CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHhhC-----------C-CCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 345678999999999998887765 21 1 222 49999999999999999999954 21
Q ss_pred ------------------cEEEEeCcccchhcccccHHHHHHHHHHhh--------------hcCCeEEEEcCcccccCC
Q 001162 905 ------------------RFISVKGPELLNKYIGASEQAVRDIFSKAT--------------AAAPCLLFFDEFDSIAPK 952 (1134)
Q Consensus 905 ------------------~~i~i~~~el~~~~~G~se~~v~~lf~~A~--------------~~~P~VLfiDEid~l~~~ 952 (1134)
.++.+++++.. ......++++++.+. ...|.||+|||++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L--- 146 (354)
T 1sxj_E 74 QFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL--- 146 (354)
T ss_dssp ------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS---
T ss_pred eecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc---
Confidence 12333332210 011113555555442 236789999999986
Q ss_pred CCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-
Q 001162 953 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA- 1031 (1134)
Q Consensus 953 r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~- 1031 (1134)
.....+.++..|+.. ..++.+|.+|+.++.+.+++++ |+ ..+.|++|+.+++..+++.++++.++.
T Consensus 147 --------~~~~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (354)
T 1sxj_E 147 --------TKDAQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQL 213 (354)
T ss_dssp --------CHHHHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEE
T ss_pred --------CHHHHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCC
Confidence 234566777777643 3457777788999999999998 77 778999999999999999988765543
Q ss_pred C-cccHHHHHHhccCCcHHHHHHHHHHHH
Q 001162 1032 D-DVDLEAIAHMTEGFSGADLQALLSDAQ 1059 (1134)
Q Consensus 1032 ~-~vd~~~La~~t~g~sg~dl~~l~~~A~ 1059 (1134)
+ +..++.+++.+.| +.+++.+++..+.
T Consensus 214 ~~~~~l~~i~~~~~G-~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 214 ETKDILKRIAQASNG-NLRVSLLMLESMA 241 (354)
T ss_dssp CCSHHHHHHHHHHTT-CHHHHHHHHTHHH
T ss_pred CcHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 2 3446778877764 3444444444433
No 138
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.41 E-value=5.9e-13 Score=150.38 Aligned_cols=192 Identities=17% Similarity=0.234 Sum_probs=132.2
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~ 631 (1134)
.+.++.|.+..++.+.+.+ .. .. ..++||+||||||||++++++++.+.... ....++.++|+.
T Consensus 15 ~~~~~~g~~~~~~~l~~~l----~~----------~~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~ 78 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYV----ER----------KN-IPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASD 78 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTT----TT----------TC-CCCEEEESSSSSSHHHHHHHHHHHHHTTC-HHHHCEEEETTS
T ss_pred CHHHHhCCHHHHHHHHHHH----hC----------CC-CCeEEEECcCCcCHHHHHHHHHHHhcCCc-ccCCeEEEeCcc
Confidence 4667888887776654432 21 11 23499999999999999999999874221 124567788877
Q ss_pred ccccchhhHHHHHHHHHHHH-h-hcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCc
Q 001162 632 LSLEKGPIIRQALSNFISEA-L-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1134)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a-~-~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1134)
..+. ......+....... . ...+.+++|||+|.+.. ...+.|...++... ..
T Consensus 79 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~L~~~le~~~---------~~ 132 (319)
T 2chq_A 79 ERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA---------------DAQAALRRTMEMYS---------KS 132 (319)
T ss_dssp TTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH---------------HHHHTTGGGTSSSS---------SS
T ss_pred ccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH---------------HHHHHHHHHHHhcC---------CC
Confidence 5432 22223333322111 1 14478999999999841 22233333333221 24
Q ss_pred EEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 001162 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1134)
Q Consensus 710 V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~ 789 (1134)
+.+|+++|.+..+.+.+.+ |+. .+.|++|+.+++.+++...+...++.++++.+..++..+.| +.+.+..+++.+.
T Consensus 133 ~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~ 208 (319)
T 2chq_A 133 CRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA 208 (319)
T ss_dssp EEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHH
T ss_pred CeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 7888899999999999998 776 89999999999999999999888888999999999987766 5666666666543
No 139
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.41 E-value=3.2e-12 Score=170.91 Aligned_cols=113 Identities=22% Similarity=0.326 Sum_probs=85.8
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccch----hccc------------ccHHHHHHHHHHhh
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN----KYIG------------ASEQAVRDIFSKAT 934 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~----~~~G------------~se~~v~~lf~~A~ 934 (1134)
++.++.+++|+||||||||+||.++|.+. |.....++..+.++ +..| ..++.++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 46778899999999999999999998765 56677777665431 2223 44677788888889
Q ss_pred hcCCeEEEEcCcccccCCC---CC-CCCcc--hhhHHHhHhhhcccccccccEEEEEe
Q 001162 935 AAAPCLLFFDEFDSIAPKR---GH-DNTGV--TDRVVNQFLTELDGVEVLTGVFVFAA 986 (1134)
Q Consensus 935 ~~~P~VLfiDEid~l~~~r---~~-~~~~~--~~rv~~~lL~~ld~~~~~~~v~vIat 986 (1134)
..+|++|||||++.+.+.+ +. +.... ..|+++++|.+|.+.....+++||++
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~t 1560 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 1560 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 9999999999999998842 11 11122 47899999999999888888888854
No 140
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.40 E-value=1.3e-12 Score=144.17 Aligned_cols=205 Identities=15% Similarity=0.119 Sum_probs=125.9
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~ 631 (1134)
+|.+++|.+..+..+.+.+..+.. .+.++||+||||||||++|+++++.+.... .++++++|+.
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~-------------~~~~vll~G~~GtGKt~la~~i~~~~~~~~---~~~~~v~~~~ 67 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAP-------------LDKPVLIIGERGTGKELIASRLHYLSSRWQ---GPFISLNCAA 67 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTT-------------SCSCEEEECCTTSCHHHHHHHHHHTSTTTT---SCEEEEEGGG
T ss_pred ccccceeCCHHHHHHHHHHHHHhC-------------CCCCEEEECCCCCcHHHHHHHHHHhcCccC---CCeEEEecCC
Confidence 466788899999998888766542 236799999999999999999999764322 5688899998
Q ss_pred ccccchhh-H----HHHH-------HHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc-
Q 001162 632 LSLEKGPI-I----RQAL-------SNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG- 698 (1134)
Q Consensus 632 l~~~~~~~-~----~~~l-------~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~- 698 (1134)
+....... + ...+ ...+.. ..+++|||||+|.+.. .....|...++...
T Consensus 68 ~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~---------------~~q~~Ll~~l~~~~~ 129 (265)
T 2bjv_A 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPM---------------MVQEKLLRVIEYGEL 129 (265)
T ss_dssp SCHHHHHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCH---------------HHHHHHHHHHHHCEE
T ss_pred CChhHHHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCH---------------HHHHHHHHHHHhCCe
Confidence 74221100 0 0000 011222 2357999999999841 23344555555421
Q ss_pred -cccccccCCCcEEEEEecCCC-------CCCChhhccCCCcc-ccccCCCCCH--HHHHHHHHHHhhh----ccc----
Q 001162 699 -EKRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR----RSL---- 759 (1134)
Q Consensus 699 -~~~~~~~~~~~V~vIattn~~-------~~Ld~aL~~~gRF~-~~i~l~~P~~--eeR~~IL~~~l~~----~~l---- 759 (1134)
..........++.+|+++|.. ..+.+.|.+ ||. ..+.+|+... ++...+++.++.. .+.
T Consensus 130 ~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~ 207 (265)
T 2bjv_A 130 ERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFP 207 (265)
T ss_dssp CCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred ecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCccc
Confidence 000000011247889999873 246788887 885 3566776654 5566665555432 232
Q ss_pred CCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 001162 760 ECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1134)
Q Consensus 760 ~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a 792 (1134)
.++++.+..+.......+.++|++++++++..+
T Consensus 208 ~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 208 GFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp CBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 578999998887765557889999999987654
No 141
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=3.7e-12 Score=145.99 Aligned_cols=207 Identities=16% Similarity=0.219 Sum_probs=136.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcC-----CcEEEEeCcc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-----LRFISVKGPE 913 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~-----~~~i~i~~~e 913 (1134)
.+..|+++.|.+.+.+.|...+... +. .+++|+||||||||++|+++|+.+. ..++.+++++
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~g------------~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 86 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDEG------------KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD 86 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTT------------CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcC------------CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc
Confidence 4568899999999999988876631 11 2599999999999999999999863 3577787765
Q ss_pred cchhcccccHHHHHHHHHHhh------hcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEec
Q 001162 914 LLNKYIGASEQAVRDIFSKAT------AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT 987 (1134)
Q Consensus 914 l~~~~~G~se~~v~~lf~~A~------~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatT 987 (1134)
.. | ...+++.+.... ...+.|++|||+|.+. ....+.|+..|+. ....+.+|.+|
T Consensus 87 ~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~--~~~~~~~il~~ 147 (340)
T 1sxj_C 87 DR----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-----------NAAQNALRRVIER--YTKNTRFCVLA 147 (340)
T ss_dssp CC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-----------HHHHHHHHHHHHH--TTTTEEEEEEE
T ss_pred cc----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhc--CCCCeEEEEEe
Confidence 32 1 234444443322 1236899999999983 3456778877763 33456667788
Q ss_pred CCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHH
Q 001162 988 SRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA-DDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEI 1066 (1134)
Q Consensus 988 n~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~-~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~ 1066 (1134)
|.++.+.+++++ |+. .+.|++++.++..++++.+++..++. ++.....++..+ ++|++.+++.....
T Consensus 148 n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s----~G~~r~~~~~l~~~----- 215 (340)
T 1sxj_C 148 NYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELS----NGDMRRVLNVLQSC----- 215 (340)
T ss_dssp SCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHH----TTCHHHHHHHTTTT-----
T ss_pred cCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHH-----
Confidence 999999999999 775 67899999999999998888544432 222344555544 44544433211100
Q ss_pred HhccCCCCCCCcccccHHHHHHHHhh
Q 001162 1067 LNNIDSNEPGKMPVITDALLKSIASK 1092 (1134)
Q Consensus 1067 ~~~~~~~~~~~~~~it~e~l~~al~~ 1092 (1134)
. ......+...||.+++..++..
T Consensus 216 ~---~~~~~~~~~~it~~~v~~~~~~ 238 (340)
T 1sxj_C 216 K---ATLDNPDEDEISDDVIYECCGA 238 (340)
T ss_dssp T---TTTCSSSCCCBCHHHHHHHTTC
T ss_pred H---HhcCCcccccccHHHHHHHhCC
Confidence 0 0001112235888888776654
No 142
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.38 E-value=8e-13 Score=136.58 Aligned_cols=156 Identities=16% Similarity=0.278 Sum_probs=105.9
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCc----eeeEEEEE
Q 001162 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFV 627 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~----~~~~~~~v 627 (1134)
.+.++.|.+..++.+.+.+.. ..+.++||+||||||||++++++++.+..... ....++++
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~---------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR---------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS---------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred ccchhhcchHHHHHHHHHHhC---------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 356778888888877765421 22467999999999999999999998843110 12567788
Q ss_pred eccccc--ccchhhHHHHHHHHHHHHhhc-CCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccc
Q 001162 628 CCSRLS--LEKGPIIRQALSNFISEALDH-APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 704 (1134)
Q Consensus 628 ~~s~l~--~~~~~~~~~~l~~~f~~a~~~-~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~ 704 (1134)
+|..+. ....+.....+..++..+... .|.+|+|||+|.+.+.+...+.. . .+.+.|...++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~--~----~~~~~l~~~~~~-------- 150 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGA--L----DAGNILKPMLAR-------- 150 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTS--C----CTHHHHHHHHHT--------
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccc--h----HHHHHHHHHHhc--------
Confidence 887664 234455566677777776554 67899999999997433211111 1 233344444432
Q ss_pred cCCCcEEEEEecCCCC-----CCChhhccCCCccccccCCCCC
Q 001162 705 CGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPA 742 (1134)
Q Consensus 705 ~~~~~V~vIattn~~~-----~Ld~aL~~~gRF~~~i~l~~P~ 742 (1134)
+.+.+|++++.++ .+++++++ ||. .+.+++|+
T Consensus 151 ---~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 151 ---GELRCIGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp ---TCSCEEEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred ---CCeeEEEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 1377888888765 68999999 998 58999886
No 143
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.37 E-value=1.3e-11 Score=163.86 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=80.8
Q ss_pred CCCCceEEEcCCCCchhHHHHHHHH---HcCCcEEEEeCcccch----------------hcccccHHHHHHHHHHhhhc
Q 001162 876 RLRSNVLLYGPPGCGKTHIVGAAAA---ACSLRFISVKGPELLN----------------KYIGASEQAVRDIFSKATAA 936 (1134)
Q Consensus 876 ~~~~~vLL~GppGtGKT~lA~alA~---~~~~~~i~i~~~el~~----------------~~~G~se~~v~~lf~~A~~~ 936 (1134)
+..+-+.+|||+|||||++|-.++. ..|.....++..+-++ .+....|+.+.-+...++..
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~ 1508 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 1508 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcC
Confidence 3445599999999999999866653 3377888887754322 13344578888888888999
Q ss_pred CCeEEEEcCcccccCCCCC------CCCcchhhHHHhHhhhcccccccccEEEEEecC
Q 001162 937 APCLLFFDEFDSIAPKRGH------DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATS 988 (1134)
Q Consensus 937 ~P~VLfiDEid~l~~~r~~------~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn 988 (1134)
+|++|+||.+.+|.|+..- ..-+...|++++-|.-|.+.-...++.+|.+.-
T Consensus 1509 ~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~ 1566 (1706)
T 3cmw_A 1509 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1566 (1706)
T ss_dssp CCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCcEEEEeec
Confidence 9999999999999987532 234456688888888877766666666665443
No 144
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.37 E-value=9e-13 Score=148.75 Aligned_cols=188 Identities=18% Similarity=0.215 Sum_probs=112.0
Q ss_pred CCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchh----
Q 001162 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK---- 917 (1134)
Q Consensus 845 ~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~---- 917 (1134)
+++|.....+.+.+.+.... ....++||+||||||||++|++++..+ +.+|+.++|+.+...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 46777777776666655321 234589999999999999999999976 578999999876431
Q ss_pred ---------cccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc---------ccc
Q 001162 918 ---------YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---------VLT 979 (1134)
Q Consensus 918 ---------~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~---------~~~ 979 (1134)
|.|... .....|+.|.. ++||||||+.+. ..+...|+..|+... ...
T Consensus 72 ~lfg~~~g~~tg~~~-~~~g~~~~a~~---g~L~LDEi~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 136 (304)
T 1ojl_A 72 ELFGHEKGAFTGADK-RREGRFVEADG---GTLFLDEIGDIS-----------PLMQVRLLRAIQEREVQRVGSNQTISV 136 (304)
T ss_dssp HHTCCCSSCCC---C-CCCCHHHHHTT---SEEEEESCTTCC-----------HHHHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred HhcCccccccCchhh-hhcCHHHhcCC---CEEEEeccccCC-----------HHHHHHHHHHHhcCEeeecCCcccccC
Confidence 112111 12345555543 599999999983 245566666665322 123
Q ss_pred cEEEEEecCCC--C-----ccchhhcCcCccc-ceeecCCCC--HHHHHHHHHHHHcc----CCCC-Cccc---HHHHHH
Q 001162 980 GVFVFAATSRP--D-----LLDAALLRPGRLD-RLLFCDFPS--PRERLDILKVISRK----LPLA-DDVD---LEAIAH 1041 (1134)
Q Consensus 980 ~v~vIatTn~p--~-----~ld~allrpgRfd-~~i~~~~p~--~~er~~Il~~~~~~----~~~~-~~vd---~~~La~ 1041 (1134)
++.||+|||.+ + .+++.|.. ||. ..|.+|+.. .++...+++.+++. .+.. ..++ ++.|..
T Consensus 137 ~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~ 214 (304)
T 1ojl_A 137 DVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH 214 (304)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH
T ss_pred CeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc
Confidence 47888899975 1 13455555 664 224555554 34555566655432 2211 2334 344444
Q ss_pred hccCCcHHHHHHHHHHHHH
Q 001162 1042 MTEGFSGADLQALLSDAQL 1060 (1134)
Q Consensus 1042 ~t~g~sg~dl~~l~~~A~~ 1060 (1134)
+.-.-+.+++.+++..|..
T Consensus 215 ~~wpGnvReL~~~l~~~~~ 233 (304)
T 1ojl_A 215 YDWPGNIRELENAIERAVV 233 (304)
T ss_dssp CCCSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 4322234666776665544
No 145
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.36 E-value=3.9e-13 Score=164.87 Aligned_cols=164 Identities=16% Similarity=0.207 Sum_probs=103.7
Q ss_pred CCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEE----eCcccchhc-
Q 001162 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISV----KGPELLNKY- 918 (1134)
Q Consensus 844 ~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i----~~~el~~~~- 918 (1134)
..+.|++.+++.+...+... ..........+...++||+||||||||++|+++|+.++..++.. ++.++....
T Consensus 295 ~~I~G~e~vk~al~~~l~~g--~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG--VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC--CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhCC--CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 35789999888874443321 11111112233445899999999999999999999987665442 222222211
Q ss_pred ----ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc-----------ccccEEE
Q 001162 919 ----IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-----------VLTGVFV 983 (1134)
Q Consensus 919 ----~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~-----------~~~~v~v 983 (1134)
.|.... -...+..|. .+|+||||||.+. ....+.|+..|+.-. ...++.|
T Consensus 373 ~~~~~g~~~~-~~G~l~~A~---~gil~IDEid~l~-----------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~v 437 (595)
T 3f9v_A 373 REKGTGEYYL-EAGALVLAD---GGIAVIDEIDKMR-----------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAV 437 (595)
T ss_dssp SGGGTSSCSE-EECHHHHHS---SSEECCTTTTCCC-----------SHHHHHHHHHHHSSSEEEESSSSEEEECCCCEE
T ss_pred eccccccccc-cCCeeEecC---CCcEEeehhhhCC-----------HhHhhhhHHHHhCCEEEEecCCcEEEecCceEE
Confidence 111100 011233343 3599999999983 345667777775321 1246889
Q ss_pred EEecCCCC-------------ccchhhcCcCcccce-eecCCCCHHHHHHHHHHHHcc
Q 001162 984 FAATSRPD-------------LLDAALLRPGRLDRL-LFCDFPSPRERLDILKVISRK 1027 (1134)
Q Consensus 984 IatTn~p~-------------~ld~allrpgRfd~~-i~~~~p~~~er~~Il~~~~~~ 1027 (1134)
|||||.+. .+++++++ |||.. +..+.|+.+ ...|.+.+++.
T Consensus 438 IaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 438 IAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp EEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred EEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 99999886 79999999 99854 456677777 88888877654
No 146
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.35 E-value=5.7e-12 Score=144.90 Aligned_cols=192 Identities=20% Similarity=0.303 Sum_probs=126.3
Q ss_pred cccccccchhhHHHHHHHHHHhc-CCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCC-cee--------
Q 001162 552 NVSSLSWMGTTASDVINRIKVLL-SPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK-DLV-------- 621 (1134)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll-~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~-~~~-------- 621 (1134)
+|.++.|.+..++.+.+ .+ .. ...+. ++|+||+|+||||+++++++.+.... +..
T Consensus 12 ~~~~~vg~~~~~~~l~~----~~~~~----------~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKS----LSDQP----------RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp SGGGCCSCHHHHHHHHT----TTTCT----------TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred CHHHhcCCHHHHHHHHH----HHhhC----------CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 45677787766654433 22 11 12234 99999999999999999999753211 100
Q ss_pred --------------eEEEEEecccccccchhhHHHHHHHHHHHHh--------------hcCCeEEEEcccchhccCCCC
Q 001162 622 --------------AHIVFVCCSRLSLEKGPIIRQALSNFISEAL--------------DHAPSIVIFDNLDSIISSSSD 673 (1134)
Q Consensus 622 --------------~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~--------------~~~PsIL~IDEiD~L~~~~~~ 673 (1134)
..++.++++........ .+++.+..+. ...|.|++|||++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~----- 147 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSDMGNNDRI----VIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT----- 147 (354)
T ss_dssp ---------CCEECSSEEEECCC----CCHH----HHHHHHHHHTTTTC------------CCEEEEEECTTSSC-----
T ss_pred ccccccceeeeecccceEEecHhhcCCcchH----HHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC-----
Confidence 01223333222111111 1233333321 2367799999999863
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHH
Q 001162 674 PEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHE 753 (1134)
Q Consensus 674 ~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~ 753 (1134)
. ...+.|...++.... ...+|.+|+.++.+.+.+++ |+ ..+.|++|+.+++.++++..
T Consensus 148 ------~----~~~~~L~~~le~~~~---------~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~ 205 (354)
T 1sxj_E 148 ------K----DAQAALRRTMEKYSK---------NIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDV 205 (354)
T ss_dssp ------H----HHHHHHHHHHHHSTT---------TEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHH
T ss_pred ------H----HHHHHHHHHHHhhcC---------CCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHH
Confidence 1 234455566665432 36788888988999999998 77 58999999999999999999
Q ss_pred hhhcccCCC-HHHHHHHhhhcCCCChhhHHHHHHHHHH
Q 001162 754 IQRRSLECS-DEILLDVASKCDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 754 l~~~~l~~~-~~~l~~la~~teG~s~~DL~~Lv~~a~~ 790 (1134)
+...++.++ ++.+..++..+.| +.+++..+++.+..
T Consensus 206 ~~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 206 VTNERIQLETKDILKRIAQASNG-NLRVSLLMLESMAL 242 (354)
T ss_dssp HHHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHH
T ss_pred HHHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 888888888 9999999998877 67777777776653
No 147
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.34 E-value=3.7e-12 Score=140.62 Aligned_cols=194 Identities=19% Similarity=0.181 Sum_probs=113.0
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcC---CcEEEEeCcccchh
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS---LRFISVKGPELLNK 917 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~---~~~i~i~~~el~~~ 917 (1134)
..|++++|.+...+.+.+.+.... ....++||+||||||||++|+++++.+. .+|+.++++++...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 357788898888877776665321 1235899999999999999999999875 68999999876321
Q ss_pred -----cccccHHH-------HHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc---------
Q 001162 918 -----YIGASEQA-------VRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--------- 976 (1134)
Q Consensus 918 -----~~G~se~~-------v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~--------- 976 (1134)
..|..... ....|..|. +.+|||||+|.+. ..+...|+..|+...
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~a~---~~~l~lDEi~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~ 137 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAP-----------MMVQEKLLRVIEYGELERVGGSQP 137 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHHTT---TSEEEEESGGGSC-----------HHHHHHHHHHHHHCEECCCCC--C
T ss_pred HHHHHhcCCcccccccccccccchhhhcC---CcEEEEechHhcC-----------HHHHHHHHHHHHhCCeecCCCccc
Confidence 11211100 112344443 4699999999983 345566666665311
Q ss_pred ccccEEEEEecCCC-C------ccchhhcCcCcccc-eeecCCCCH--HHHHHHHHHHHc----cCCCC--CcccHHHHH
Q 001162 977 VLTGVFVFAATSRP-D------LLDAALLRPGRLDR-LLFCDFPSP--RERLDILKVISR----KLPLA--DDVDLEAIA 1040 (1134)
Q Consensus 977 ~~~~v~vIatTn~p-~------~ld~allrpgRfd~-~i~~~~p~~--~er~~Il~~~~~----~~~~~--~~vd~~~La 1040 (1134)
...++.||+|||.+ . .++++|.+ ||.. .+.+|+... ++...+++.+++ ..+.. ..++.+.+.
T Consensus 138 ~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~ 215 (265)
T 2bjv_A 138 LQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARE 215 (265)
T ss_dssp EECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHH
T ss_pred ccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHH
Confidence 12357788888874 2 25677877 8863 455655543 455555544432 23332 134444443
Q ss_pred Hhc-cCC--cHHHHHHHHHHHHHH
Q 001162 1041 HMT-EGF--SGADLQALLSDAQLS 1061 (1134)
Q Consensus 1041 ~~t-~g~--sg~dl~~l~~~A~~~ 1061 (1134)
... .++ +.+++.+++..+...
T Consensus 216 ~L~~~~~~gn~reL~~~l~~~~~~ 239 (265)
T 2bjv_A 216 TLLNYRWPGNIRELKNVVERSVYR 239 (265)
T ss_dssp HHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHh
Confidence 332 223 456777777766543
No 148
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.33 E-value=1.1e-11 Score=142.04 Aligned_cols=187 Identities=18% Similarity=0.263 Sum_probs=126.1
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccc
Q 001162 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (1134)
Q Consensus 553 ~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l 632 (1134)
+.++.|.+..++.+...+.. ...| |+||+||||||||++++++|+.+..... ...+..++++..
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~--------------g~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~-~~~~~~~~~~~~ 87 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDE--------------GKLP-HLLFYGPPGTGKTSTIVALAREIYGKNY-SNMVLELNASDD 87 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHT--------------TCCC-CEEEECSSSSSHHHHHHHHHHHHHTTSH-HHHEEEECTTSC
T ss_pred HHHhcCcHHHHHHHHHHHhc--------------CCCc-eEEEECCCCCCHHHHHHHHHHHHcCCCc-cceEEEEcCccc
Confidence 55666777666665554321 1222 4999999999999999999999753221 134566676653
Q ss_pred cccchhhHHHHHHHHHHHH--hhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcE
Q 001162 633 SLEKGPIIRQALSNFISEA--LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1134)
Q Consensus 633 ~~~~~~~~~~~l~~~f~~a--~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1134)
.+ ...++..+..+.+.. ....+.|++|||+|.+.. ...+.|...++.... ..
T Consensus 88 ~~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~---------------~~~~~L~~~le~~~~---------~~ 141 (340)
T 1sxj_C 88 RG--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN---------------AAQNALRRVIERYTK---------NT 141 (340)
T ss_dssp CS--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH---------------HHHHHHHHHHHHTTT---------TE
T ss_pred cc--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH---------------HHHHHHHHHHhcCCC---------Ce
Confidence 22 233333333322111 112367999999999841 224455666665432 36
Q ss_pred EEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHH
Q 001162 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILV 785 (1134)
Q Consensus 711 ~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv 785 (1134)
.+|.++|.+..+.+.+++ |+. .+.|++++.++..+++...+...++.++++.+..++..+.| +.+.+..++
T Consensus 142 ~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G-~~r~~~~~l 212 (340)
T 1sxj_C 142 RFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVL 212 (340)
T ss_dssp EEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHT
T ss_pred EEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 677888999999999999 876 78999999999999999988777788899999999988776 344433333
No 149
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.32 E-value=4.2e-12 Score=143.22 Aligned_cols=202 Identities=15% Similarity=0.186 Sum_probs=128.2
Q ss_pred ccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccc
Q 001162 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1134)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~ 634 (1134)
++.|.+..+.++.+.+..+.. .+.++||+||||||||++|++++....... .+++.++|..+..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~-------------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~---~~~v~v~~~~~~~ 66 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAP-------------SDATVLIHGDSGTGKELVARALHACSARSD---RPLVTLNCAALNE 66 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCS-------------TTSCEEEESCTTSCHHHHHHHHHHHSSCSS---SCCCEEECSSCCH
T ss_pred CcEECCHHHHHHHHHHHHHhC-------------CCCcEEEECCCCchHHHHHHHHHHhCcccC---CCeEEEeCCCCCh
Confidence 467788888988888766542 236799999999999999999999764222 5688899987643
Q ss_pred cchhh---------HHH---HHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--cc
Q 001162 635 EKGPI---------IRQ---ALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EK 700 (1134)
Q Consensus 635 ~~~~~---------~~~---~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~--~~ 700 (1134)
..... ... .....|..+ .+++|||||+|.+.. .....|...++... ..
T Consensus 67 ~l~~~~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~---------------~~q~~Ll~~l~~~~~~~~ 128 (304)
T 1ojl_A 67 SLLESELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISP---------------LMQVRLLRAIQEREVQRV 128 (304)
T ss_dssp HHHHHHHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCH---------------HHHHHHHHHHHSSBCCBT
T ss_pred HHHHHHhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCH---------------HHHHHHHHHHhcCEeeec
Confidence 11100 000 011223333 347999999998841 23344555555422 10
Q ss_pred cccccCCCcEEEEEecCCC-------CCCChhhccCCCcc-ccccCCCCC--HHHHHHHHHHHhhhc-------ccCCCH
Q 001162 701 RKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPA--ASERKAILEHEIQRR-------SLECSD 763 (1134)
Q Consensus 701 ~~~~~~~~~V~vIattn~~-------~~Ld~aL~~~gRF~-~~i~l~~P~--~eeR~~IL~~~l~~~-------~l~~~~ 763 (1134)
........++.+|++||.. ..+.+.|.. ||. ..+++|++. .++...+++.++... ...+++
T Consensus 129 g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~ 206 (304)
T 1ojl_A 129 GSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTP 206 (304)
T ss_dssp TBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCH
T ss_pred CCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCH
Confidence 0001112257899999874 234566666 664 335677666 466666777665431 245889
Q ss_pred HHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 001162 764 EILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1134)
Q Consensus 764 ~~l~~la~~teG~s~~DL~~Lv~~a~~~a 792 (1134)
+.+..+.......+.++|++++++++..+
T Consensus 207 ~a~~~L~~~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 207 QAMDLLIHYDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp HHHHHHHHCCCSSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHhC
Confidence 99999998874557899999999987543
No 150
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.30 E-value=3.6e-11 Score=137.45 Aligned_cols=165 Identities=19% Similarity=0.231 Sum_probs=116.9
Q ss_pred hhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC------------------------
Q 001162 849 LTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------------------------ 904 (1134)
Q Consensus 849 l~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~------------------------ 904 (1134)
++++.+.+...+... +.+..+||+||||+|||++|+++|+.+..
T Consensus 7 ~~~~~~~l~~~i~~~------------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 7 LRPDFEKLVASYQAG------------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp GHHHHHHHHHHHHTT------------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHcC------------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 455555665554421 33456999999999999999999998742
Q ss_pred cEEEEeCcccchhcccccHHHHHHHHHHhhh----cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccccccc
Q 001162 905 RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTG 980 (1134)
Q Consensus 905 ~~i~i~~~el~~~~~G~se~~v~~lf~~A~~----~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~ 980 (1134)
+++.+++.+- + .+...+.++++++.+.. +.+.|++|||+|.+ .....|.|++.|+ ++..+
T Consensus 75 d~~~~~~~~~-~--~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l-----------~~~a~naLLk~lE--ep~~~ 138 (334)
T 1a5t_A 75 DYYTLAPEKG-K--NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALL-----------TDAAANALLKTLE--EPPAE 138 (334)
T ss_dssp TEEEECCCTT-C--SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGB-----------CHHHHHHHHHHHT--SCCTT
T ss_pred CEEEEecccc-C--CCCCHHHHHHHHHHHhhccccCCcEEEEECchhhc-----------CHHHHHHHHHHhc--CCCCC
Confidence 3444444210 0 01234567888887743 34689999999998 3456788999997 45567
Q ss_pred EEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcH
Q 001162 981 VFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSG 1048 (1134)
Q Consensus 981 v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg 1048 (1134)
+++|.+|+.++.+.+++++ |+. .+.|++|+.++..++++... .+ ++.....+++.+.|..+
T Consensus 139 ~~~Il~t~~~~~l~~ti~S--Rc~-~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G~~r 199 (334)
T 1a5t_A 139 TWFFLATREPERLLATLRS--RCR-LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAGSPG 199 (334)
T ss_dssp EEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTTCHH
T ss_pred eEEEEEeCChHhCcHHHhh--cce-eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCCHH
Confidence 8888889999999999999 664 68999999999999988765 22 33345667777765443
No 151
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.29 E-value=9e-12 Score=148.99 Aligned_cols=194 Identities=12% Similarity=0.081 Sum_probs=115.2
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc-----ccccchhhHHHHHHHHHHHHhhc---CCeEEEEc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR-----LSLEKGPIIRQALSNFISEALDH---APSIVIFD 662 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~-----l~~~~~~~~~~~l~~~f~~a~~~---~PsIL~ID 662 (1134)
+++||+||||||||++|+++|+.+... .++.++.|.. +.+........ -...|..+... .++|||||
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~~----~~f~~~~~~~~t~~dL~G~~~~~~~~-~~g~~~~~~~g~l~~~~IL~ID 116 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQNA----RAFEYLMTRFSTPEEVFGPLSIQALK-DEGRYERLTSGYLPEAEIVFLD 116 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSSC----CEEEEECCTTCCHHHHHCCBC-----------CBCCTTSGGGCSEEEEE
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhhh----hHHHHHHHhcCCHHHhcCcccHHHHh-hchhHHhhhccCCCcceeeeHH
Confidence 679999999999999999999987422 3455555542 22211110000 01112211111 46799999
Q ss_pred ccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccc-cccccCCCcEEEEEecCCCCC---CChhhccCCCccccccC
Q 001162 663 NLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK-RKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFDFHVQL 738 (1134)
Q Consensus 663 EiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~-~~~~~~~~~V~vIattn~~~~---Ld~aL~~~gRF~~~i~l 738 (1134)
|++.+. ......|...|+...-. .+.....+..++|++||.... ..+++.+ ||...+.+
T Consensus 117 EI~r~~---------------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v 179 (500)
T 3nbx_X 117 EIWKAG---------------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD--RMLIRLWL 179 (500)
T ss_dssp SGGGCC---------------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEEC
T ss_pred hHhhhc---------------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH--HHHHHHHH
Confidence 998763 14555666666542211 001111112245777775322 3358888 99888999
Q ss_pred CCCCH-HHHHHHHHHHhhh-----------------------cccCCCHHHHHHHhhhc---------CCCChhhHHHHH
Q 001162 739 PAPAA-SERKAILEHEIQR-----------------------RSLECSDEILLDVASKC---------DGYDAYDLEILV 785 (1134)
Q Consensus 739 ~~P~~-eeR~~IL~~~l~~-----------------------~~l~~~~~~l~~la~~t---------eG~s~~DL~~Lv 785 (1134)
++|+. +++.+|++..... ..+.++++.+.+++... .|.+++.+..++
T Consensus 180 ~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~ll 259 (500)
T 3nbx_X 180 DKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAI 259 (500)
T ss_dssp CSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHH
T ss_pred HHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHH
Confidence 99987 7888998764321 13456777766665544 477899988888
Q ss_pred HHHHHHHhcccccCCCccccccccccchhhhH
Q 001162 786 DRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFS 817 (1134)
Q Consensus 786 ~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~ 817 (1134)
+.|...|..+ +...++.+|+.
T Consensus 260 r~A~A~A~l~-----------gr~~Vt~eDv~ 280 (500)
T 3nbx_X 260 RLLQASAFFS-----------GRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHT-----------TCSBCCGGGGG
T ss_pred HHHHHHHhhc-----------CCccccchHHH
Confidence 8776555433 22446777766
No 152
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=2.2e-11 Score=137.14 Aligned_cols=142 Identities=16% Similarity=0.183 Sum_probs=108.7
Q ss_pred ChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc------CCcEEEEeCcccchhcccc
Q 001162 848 GLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC------SLRFISVKGPELLNKYIGA 921 (1134)
Q Consensus 848 gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~------~~~~i~i~~~el~~~~~G~ 921 (1134)
|++++.+.|...+... + ..++|||||||||||++|+++|+.+ ..+++.++++. . ..
T Consensus 1 g~~~~~~~L~~~i~~~------------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~--~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E--NI 62 (305)
T ss_dssp ---CHHHHHHHHHHTC------------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S--CB
T ss_pred ChHHHHHHHHHHHHCC------------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---C--CC
Confidence 5667777777776532 1 3479999999999999999999874 45788887652 1 12
Q ss_pred cHHHHHHHHHHhhhc----CCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhh
Q 001162 922 SEQAVRDIFSKATAA----APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAAL 997 (1134)
Q Consensus 922 se~~v~~lf~~A~~~----~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~al 997 (1134)
.-+.+|++++.+... ...|+||||+|.+ .....|.|++.|+ ++...+++|.+|+.|+.+.|++
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~l-----------t~~a~naLLk~LE--ep~~~t~fIl~t~~~~kl~~tI 129 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERM-----------TQQAANAFLKALE--EPPEYAVIVLNTRRWHYLLPTI 129 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGB-----------CHHHHHHTHHHHH--SCCTTEEEEEEESCGGGSCHHH
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHh-----------CHHHHHHHHHHHh--CCCCCeEEEEEECChHhChHHH
Confidence 345688888887532 2479999999998 3456889999997 4556677777888899999999
Q ss_pred cCcCcccceeecCCCCHHHHHHHHHHHH
Q 001162 998 LRPGRLDRLLFCDFPSPRERLDILKVIS 1025 (1134)
Q Consensus 998 lrpgRfd~~i~~~~p~~~er~~Il~~~~ 1025 (1134)
++ | .+.|++|+.++...+++..+
T Consensus 130 ~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 130 KS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred Hc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99 7 88999999999999998776
No 153
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.24 E-value=6.6e-11 Score=135.30 Aligned_cols=180 Identities=16% Similarity=0.178 Sum_probs=118.6
Q ss_pred ccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCce----------------
Q 001162 557 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL---------------- 620 (1134)
Q Consensus 557 ~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~---------------- 620 (1134)
.|++..++.+.+.+.. ...+..+||+||+|+|||++|+++|+.+......
T Consensus 5 pw~~~~~~~l~~~i~~--------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~ 70 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQA--------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQA 70 (334)
T ss_dssp GGGHHHHHHHHHHHHT--------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHH
T ss_pred CchHHHHHHHHHHHHc--------------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhc
Confidence 3566666665554421 2334569999999999999999999998643210
Q ss_pred --eeEEEEEecccc-cccchhhHHHHHHHHHHHHhh----cCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHH
Q 001162 621 --VAHIVFVCCSRL-SLEKGPIIRQALSNFISEALD----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1134)
Q Consensus 621 --~~~~~~v~~s~l-~~~~~~~~~~~l~~~f~~a~~----~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1134)
...+..++...- ..... ..++++++.+.. ....|++|||+|.+.. ...+.|+..
T Consensus 71 ~~~~d~~~~~~~~~~~~~~i----~~ir~l~~~~~~~~~~~~~kvviIdead~l~~---------------~a~naLLk~ 131 (334)
T 1a5t_A 71 GTHPDYYTLAPEKGKNTLGV----DAVREVTEKLNEHARLGGAKVVWVTDAALLTD---------------AAANALLKT 131 (334)
T ss_dssp TCCTTEEEECCCTTCSSBCH----HHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH---------------HHHHHHHHH
T ss_pred CCCCCEEEEeccccCCCCCH----HHHHHHHHHHhhccccCCcEEEEECchhhcCH---------------HHHHHHHHH
Confidence 012344443210 01112 234455555432 3467999999999841 224455565
Q ss_pred HHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhc
Q 001162 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1134)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~t 773 (1134)
+++.. ..+++|.+|+.++.+.+.+++ |+. .+.|++|+.++..+++.... .++++.+..++..+
T Consensus 132 lEep~---------~~~~~Il~t~~~~~l~~ti~S--Rc~-~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s 194 (334)
T 1a5t_A 132 LEEPP---------AETWFFLATREPERLLATLRS--RCR-LHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLS 194 (334)
T ss_dssp HTSCC---------TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHT
T ss_pred hcCCC---------CCeEEEEEeCChHhCcHHHhh--cce-eeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHc
Confidence 65432 147888888889999999999 765 79999999999999988754 46788888888888
Q ss_pred CCCChhhHHHHHHH
Q 001162 774 DGYDAYDLEILVDR 787 (1134)
Q Consensus 774 eG~s~~DL~~Lv~~ 787 (1134)
.| +++.+..+++.
T Consensus 195 ~G-~~r~a~~~l~~ 207 (334)
T 1a5t_A 195 AG-SPGAALALFQG 207 (334)
T ss_dssp TT-CHHHHHHTTSS
T ss_pred CC-CHHHHHHHhcc
Confidence 77 55555555443
No 154
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.21 E-value=1e-11 Score=166.14 Aligned_cols=115 Identities=19% Similarity=0.319 Sum_probs=81.5
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhc----cc--------ccHHHHHHHHHHhhh---
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY----IG--------ASEQAVRDIFSKATA--- 935 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~----~G--------~se~~v~~lf~~A~~--- 935 (1134)
|+.++.-++|+|+||+|||++|..+|..+ +.+++.++..+..... .| .++..+.+++..++.
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 57788889999999999999999999866 4579999887655443 23 122234555555543
Q ss_pred -cCCeEEEEcCcccccC-C----C-CCCCCcchhhHHHhHhhhcccccccccEEEEEecC
Q 001162 936 -AAPCLLFFDEFDSIAP-K----R-GHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATS 988 (1134)
Q Consensus 936 -~~P~VLfiDEid~l~~-~----r-~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn 988 (1134)
..|++||||.+..+.+ . + +....+...|.+++++..|..+....++.||++..
T Consensus 808 ~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Q 867 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 6799999999999986 2 2 11112344677888888888877777777776543
No 155
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.21 E-value=2.7e-10 Score=133.36 Aligned_cols=231 Identities=21% Similarity=0.206 Sum_probs=142.2
Q ss_pred cccccchhhHHHHHHHH-HHhcCCCchhhhhhcCCCCCceEEE--EcCCCccHHHHHHHHHHHhccCC---ceeeEEEEE
Q 001162 554 SSLSWMGTTASDVINRI-KVLLSPDSGLWFSTYHLPLPGHILI--HGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFV 627 (1134)
Q Consensus 554 ~~l~G~~~~~~~i~~~l-~~ll~~~~~~~~~~~~~~~p~~vLL--~GppGtGKTtLaralA~~l~~~~---~~~~~~~~v 627 (1134)
..+.|.+..++.+.+.+ ....... ...+.+++| +||+|+|||+|++.+++.+.... .....++++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~---------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGA---------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSS---------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCC---------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 46788999999988877 6544310 023467999 99999999999999999875310 012567888
Q ss_pred eccccccc--------------------chhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHH
Q 001162 628 CCSRLSLE--------------------KGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALT 687 (1134)
Q Consensus 628 ~~s~l~~~--------------------~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~ 687 (1134)
+|...... ........+...+. ....|.+|+|||+|.+..... .. ....
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~llvlDe~~~l~~~~~-----~~----~~~l 161 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLY--VENHYLLVILDEFQSMLSSPR-----IA----AEDL 161 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHH--HHTCEEEEEEESTHHHHSCTT-----SC----HHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH--hcCCeEEEEEeCHHHHhhccC-----cc----hHHH
Confidence 87532110 00111122222222 124588999999999863100 01 1333
Q ss_pred HHHHHHHHHhccccccccCCCcEEEEEecCCCC---CCC---hhhccCCCccccccCCCCCHHHHHHHHHHHhhhcc--c
Q 001162 688 KFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIP---QSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRS--L 759 (1134)
Q Consensus 688 ~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~---~Ld---~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~--l 759 (1134)
..+...+....... ...++.+|++++.++ .++ +.+.+ +|...+.+++++.++..+++...+.... .
T Consensus 162 ~~l~~~~~~~~~~~----~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~ 235 (412)
T 1w5s_A 162 YTLLRVHEEIPSRD----GVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDT 235 (412)
T ss_dssp HHHHTHHHHSCCTT----SCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTT
T ss_pred HHHHHHHHhcccCC----CCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC
Confidence 33444444432000 002578888887554 233 45555 5555599999999999999987765322 2
Q ss_pred CCCHHHHHHHhhhcC------CCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhc
Q 001162 760 ECSDEILLDVASKCD------GYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1134)
Q Consensus 760 ~~~~~~l~~la~~te------G~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1134)
.++++.+..++..+. | .++.+..+++.+...+..+ ....++.+++..++..
T Consensus 236 ~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~-----------~~~~i~~~~v~~~~~~ 292 (412)
T 1w5s_A 236 VWEPRHLELISDVYGEDKGGDG-SARRAIVALKMACEMAEAM-----------GRDSLSEDLVRKAVSE 292 (412)
T ss_dssp SCCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHT-----------TCSSCCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHc-----------CCCCCCHHHHHHHHHH
Confidence 467888888998888 6 6778888888877655432 1134666777666544
No 156
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.20 E-value=1.2e-11 Score=123.90 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=78.2
Q ss_pred CCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhcccc
Q 001162 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA 921 (1134)
Q Consensus 845 ~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~~G~ 921 (1134)
+++|.....+.+.+.+.... ....++||+||||||||++|+++++.. +.+|+ ++++.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 45666666666666554321 234579999999999999999999987 78999 999886543
Q ss_pred cHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCC
Q 001162 922 SEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP 990 (1134)
Q Consensus 922 se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p 990 (1134)
......|..|.. ++|||||+|.+. ......|+..|.. ...++.+|+|||.+
T Consensus 66 --~~~~~~~~~a~~---g~l~ldei~~l~-----------~~~q~~Ll~~l~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALAQG---GTLVLSHPEHLT-----------REQQYHLVQLQSQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHHTT---SCEEEECGGGSC-----------HHHHHHHHHHHHS--SSCSSCEEEEESSC
T ss_pred --hhhhcHHHHcCC---cEEEEcChHHCC-----------HHHHHHHHHHHhh--cCCCEEEEEECCcC
Confidence 234556776654 499999999983 3455666666632 23456778888875
No 157
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.19 E-value=9.2e-12 Score=124.37 Aligned_cols=112 Identities=17% Similarity=0.181 Sum_probs=79.4
Q ss_pred CCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcccccHH
Q 001162 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQ 924 (1134)
Q Consensus 845 ~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~G~se~ 924 (1134)
+++|.+...+.+.+.+.... ....++||+||||||||++|++++...+ +|+.++++++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 46677777777777665321 2235799999999999999999999888 99999998875543
Q ss_pred HHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCC
Q 001162 925 AVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP 990 (1134)
Q Consensus 925 ~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p 990 (1134)
...+|+.|.. .+|||||+|.+. ......++..|+... ..++.+|+|||++
T Consensus 67 -~~~~~~~a~~---~~l~lDei~~l~-----------~~~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 -PMELLQKAEG---GVLYVGDIAQYS-----------RNIQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp -HHHHHHHTTT---SEEEEEECTTCC-----------HHHHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred -hhhHHHhCCC---CeEEEeChHHCC-----------HHHHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 4667777654 599999999983 234556666665322 3457777788764
No 158
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.16 E-value=5.8e-11 Score=146.51 Aligned_cols=215 Identities=20% Similarity=0.203 Sum_probs=130.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCC---cEEEEeCcccc
Q 001162 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL---RFISVKGPELL 915 (1134)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~---~~i~i~~~el~ 915 (1134)
.+..|+++.|.+.+.+.+...+.. ..+++|+||||||||++|+++|..+.. ..+.+.+...-
T Consensus 36 rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~ 100 (604)
T 3k1j_A 36 PEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED 100 (604)
T ss_dssp CSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC
T ss_pred cccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc
Confidence 456788999999999888777652 247999999999999999999998742 22222211110
Q ss_pred --hhcc------------------------------------------------------cccHHHHHHHHHH-------
Q 001162 916 --NKYI------------------------------------------------------GASEQAVRDIFSK------- 932 (1134)
Q Consensus 916 --~~~~------------------------------------------------------G~se~~v~~lf~~------- 932 (1134)
..++ .........+|..
T Consensus 101 ~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~ 180 (604)
T 3k1j_A 101 ENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQ 180 (604)
T ss_dssp TTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC-
T ss_pred ccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhh
Confidence 0000 0000001112210
Q ss_pred ----------------hhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccccc-------------------c
Q 001162 933 ----------------ATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-------------------V 977 (1134)
Q Consensus 933 ----------------A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~-------------------~ 977 (1134)
.....+.+|||||++.+. ..+.+.|+..|+.-. .
T Consensus 181 ~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~-----------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~ 249 (604)
T 3k1j_A 181 SGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLS-----------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPV 249 (604)
T ss_dssp ---CCCCGGGGEECCHHHHTTTSEEEETTGGGSC-----------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCE
T ss_pred cCCccccccccccCceeeecCCCEEEEechhhCC-----------HHHHHHHHHHHHcCcEEecccccccccccCCCCcc
Confidence 011244699999999982 345566666664211 1
Q ss_pred cccEEEEEecCCC--CccchhhcCcCccc---ceeecCCC---CHHHHHHHHHHHHccCC---CCCccc---HHHHHHhc
Q 001162 978 LTGVFVFAATSRP--DLLDAALLRPGRLD---RLLFCDFP---SPRERLDILKVISRKLP---LADDVD---LEAIAHMT 1043 (1134)
Q Consensus 978 ~~~v~vIatTn~p--~~ld~allrpgRfd---~~i~~~~p---~~~er~~Il~~~~~~~~---~~~~vd---~~~La~~t 1043 (1134)
..++.||+|||+. +.++++|++ ||+ ..+.|+.. +.+....+++.+.+... ....++ +..|.+..
T Consensus 250 p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~ 327 (604)
T 3k1j_A 250 PCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREA 327 (604)
T ss_dssp ECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHH
T ss_pred ceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHH
Confidence 1257789999986 569999999 886 45565432 35556666655443211 111233 44444432
Q ss_pred ---cCC------cHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhh
Q 001162 1044 ---EGF------SGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASK 1092 (1134)
Q Consensus 1044 ---~g~------sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~ 1092 (1134)
.|. +.+++.++++.|...|..+ ....|+.+|+.+|+..
T Consensus 328 ~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~-----------~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 328 QKRAGRKGHLTLRLRDLGGIVRAAGDIAVKK-----------GKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHTTCSTTEEECCHHHHHHHHHHHHHHHHHT-----------TCSSBCHHHHHHHHHH
T ss_pred hhhhccccccccCHHHHHHHHHHHHHHHHhc-----------CcccccHHHHHHHHHh
Confidence 443 5789999999876655322 3357999999999954
No 159
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.12 E-value=3.4e-11 Score=147.76 Aligned_cols=140 Identities=16% Similarity=0.189 Sum_probs=83.8
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEE----EecccccccchhhH-HHH---HHHHHHHHhhcCCeEEEE
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVF----VCCSRLSLEKGPII-RQA---LSNFISEALDHAPSIVIF 661 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~----v~~s~l~~~~~~~~-~~~---l~~~f~~a~~~~PsIL~I 661 (1134)
..++||+||||||||++|+++|+.+.. .... .++..+.+...... ... -...+..| ..+|+||
T Consensus 327 ~~~vLL~GppGtGKT~LAr~la~~~~r------~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A---~~gil~I 397 (595)
T 3f9v_A 327 DIHILIIGDPGTAKSQMLQFISRVAPR------AVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA---DGGIAVI 397 (595)
T ss_dssp SCCEEEEESSCCTHHHHHHSSSTTCSC------EECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH---SSSEECC
T ss_pred CcceEEECCCchHHHHHHHHHHHhCCC------ceecCCCccccccccceeeeccccccccccCCeeEec---CCCcEEe
Confidence 347999999999999999999998752 1111 22333322111100 000 00111222 3479999
Q ss_pred cccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhcc----ccccccCCCcEEEEEecCCCC-------------CCCh
Q 001162 662 DNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE----KRKSSCGIGPIAFVASAQSLE-------------KIPQ 724 (1134)
Q Consensus 662 DEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~----~~~~~~~~~~V~vIattn~~~-------------~Ld~ 724 (1134)
||+|.+.+ .....|.+.|+...- .........++.+|+|+|+.. .+++
T Consensus 398 DEid~l~~---------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~ 462 (595)
T 3f9v_A 398 DEIDKMRD---------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPP 462 (595)
T ss_dssp TTTTCCCS---------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCS
T ss_pred ehhhhCCH---------------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCH
Confidence 99998741 334556666664221 011111123578999999876 8899
Q ss_pred hhccCCCccccc-cCCCCCHHHHHHHHHHHhhh
Q 001162 725 SLTSSGRFDFHV-QLPAPAASERKAILEHEIQR 756 (1134)
Q Consensus 725 aL~~~gRF~~~i-~l~~P~~eeR~~IL~~~l~~ 756 (1134)
+|++ ||+..+ ..+.|+.+ ...|+++.+..
T Consensus 463 aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 463 TILS--RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp SSGG--GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred HHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 9999 997544 55666666 77887776653
No 160
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.10 E-value=1.1e-10 Score=116.72 Aligned_cols=88 Identities=15% Similarity=0.170 Sum_probs=63.1
Q ss_pred ccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccc
Q 001162 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1134)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~ 634 (1134)
++.|.+..+.++.+.+..+.. .+.++||+||||||||++|+++++...... .+++ ++|..+..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~-------------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~---~~~v-~~~~~~~~ 64 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE-------------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQ---GEFV-YRELTPDN 64 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT-------------CCSCEEEESSTTSSHHHHHHHHHHSSTTTT---SCCE-EEECCTTT
T ss_pred CceeCCHHHHHHHHHHHHHhC-------------CCCCEEEECCCCCCHHHHHHHHHHhCCccC---CCEE-EECCCCCc
Confidence 466788889998888766543 236699999999999999999999753222 4566 99988765
Q ss_pred cchhhHHHHHHHHHHHHhhcCCeEEEEcccchhc
Q 001162 635 EKGPIIRQALSNFISEALDHAPSIVIFDNLDSII 668 (1134)
Q Consensus 635 ~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~ 668 (1134)
.. .....+..+ .+++|||||+|.+.
T Consensus 65 ~~------~~~~~~~~a---~~g~l~ldei~~l~ 89 (145)
T 3n70_A 65 AP------QLNDFIALA---QGGTLVLSHPEHLT 89 (145)
T ss_dssp SS------CHHHHHHHH---TTSCEEEECGGGSC
T ss_pred ch------hhhcHHHHc---CCcEEEEcChHHCC
Confidence 41 123344444 34699999999984
No 161
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.09 E-value=2.3e-09 Score=125.40 Aligned_cols=224 Identities=14% Similarity=0.096 Sum_probs=136.7
Q ss_pred CCCCChhHHHHHHHHHH-hcCCCchhHHhhCCCCCCCceEE--EcCCCCchhHHHHHHHHHc---------CCcEEEEeC
Q 001162 844 DDVGGLTDIQNAIKEMI-ELPSKFPNIFAQAPLRLRSNVLL--YGPPGCGKTHIVGAAAAAC---------SLRFISVKG 911 (1134)
Q Consensus 844 ~~i~gl~~~k~~l~~~i-~~~~~~~~~~~~~~~~~~~~vLL--~GppGtGKT~lA~alA~~~---------~~~~i~i~~ 911 (1134)
+.+.|-++..+.+.+.+ ..... . ....+..+++ +||||+|||++++.+++.+ +..++.+++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~------~-~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLS------G-AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 94 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHT------S-SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred CCCCChHHHHHHHHHHHhHHHhc------C-CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC
Confidence 56788888777777766 42110 0 0012347889 9999999999999999876 557788886
Q ss_pred cccch------hc---c-------cccHHH-HHHHHHHh-hhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcc
Q 001162 912 PELLN------KY---I-------GASEQA-VRDIFSKA-TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELD 973 (1134)
Q Consensus 912 ~el~~------~~---~-------G~se~~-v~~lf~~A-~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld 973 (1134)
....+ .. . |.+... ...+.... ....|.||+|||+|.+...+. ....++..++..++
T Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-----~~~~~l~~l~~~~~ 169 (412)
T 1w5s_A 95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-----IAAEDLYTLLRVHE 169 (412)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-----SCHHHHHHHHTHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-----cchHHHHHHHHHHH
Confidence 43211 10 1 222222 22332222 235588999999999864311 12345555555554
Q ss_pred ccc-cc--ccEEEEEecCCCCc---cc---hhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCC---CCcccHHHHHH
Q 001162 974 GVE-VL--TGVFVFAATSRPDL---LD---AALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPL---ADDVDLEAIAH 1041 (1134)
Q Consensus 974 ~~~-~~--~~v~vIatTn~p~~---ld---~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~---~~~vd~~~La~ 1041 (1134)
... .. .++.||++|+.++. ++ +.+.+ ||...+.+++++.++..++++..+..... ..+.....++.
T Consensus 170 ~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 247 (412)
T 1w5s_A 170 EIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISD 247 (412)
T ss_dssp HSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHH
T ss_pred hcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 322 12 57888888877663 55 66767 66656999999999999999876653211 12334566777
Q ss_pred hcc------CCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhc
Q 001162 1042 MTE------GFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 1093 (1134)
Q Consensus 1042 ~t~------g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~ 1093 (1134)
.+. |. ...+..+++.|...|..+ +...++.+++..++...
T Consensus 248 ~~~~~~~~~G~-p~~~~~l~~~a~~~a~~~-----------~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 248 VYGEDKGGDGS-ARRAIVALKMACEMAEAM-----------GRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp HHCGGGTSCCC-HHHHHHHHHHHHHHHHHT-----------TCSSCCHHHHHHHHHHC
T ss_pred HHHHhccCCCc-HHHHHHHHHHHHHHHHHc-----------CCCCCCHHHHHHHHHHH
Confidence 777 64 456667777666544321 12346666666665443
No 162
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.08 E-value=1.3e-10 Score=105.17 Aligned_cols=78 Identities=29% Similarity=0.439 Sum_probs=71.2
Q ss_pred ecCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHH
Q 001162 1008 FCDFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLK 1087 (1134)
Q Consensus 1008 ~~~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~ 1087 (1134)
+-.+|+.++|.+||+.+++++++..++|++.||..|+||||+||.++|++|++.|+++. ...|+.+||.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~-----------~~~I~~~df~ 75 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------RVHVTQEDFE 75 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT-----------CSEECHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc-----------CCCCCHHHHH
Confidence 34689999999999999999999899999999999999999999999999999998763 3579999999
Q ss_pred HHHhhcCCC
Q 001162 1088 SIASKARPS 1096 (1134)
Q Consensus 1088 ~al~~~~ps 1096 (1134)
.|++.++|.
T Consensus 76 ~Al~~v~p~ 84 (86)
T 2krk_A 76 MAVAKVMQK 84 (86)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHccC
Confidence 999988774
No 163
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.07 E-value=1.2e-10 Score=104.82 Aligned_cols=81 Identities=21% Similarity=0.286 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhh
Q 001162 1013 SPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASK 1092 (1134)
Q Consensus 1013 ~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~ 1092 (1134)
+.++|.+||+.+++++++..++|++.||..|+||||+||.++|++|++.|+++ ....|+.+||..|++.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~-----------~~~~i~~~df~~Al~~ 70 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRE-----------NRYIVLAKDFEKAYKT 70 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTS-----------CCSSBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-----------ccCCcCHHHHHHHHHH
Confidence 67899999999999999889999999999999999999999999999998764 2357999999999999
Q ss_pred cCCCCcHHHHHHH
Q 001162 1093 ARPSVSEAEKLRL 1105 (1134)
Q Consensus 1093 ~~ps~~~~~~~~~ 1105 (1134)
++|+++ +++..|
T Consensus 71 ~~ps~~-~~l~~y 82 (83)
T 3aji_B 71 VIKKDE-QEHEFY 82 (83)
T ss_dssp HCC----------
T ss_pred HccCch-HHHHhc
Confidence 999998 555433
No 164
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=2.3e-09 Score=109.40 Aligned_cols=151 Identities=15% Similarity=0.157 Sum_probs=131.9
Q ss_pred ccceeeCCHHHHHHHhcccccCCCCceEEEEEEeCCC-CeEEEEecCccCCCCceEecHHHHhhcCCCCCCEEEEEEeeC
Q 001162 12 ENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSN-QRWVVAWSGATSSSSFIEVARQFAECISLADHTIVQVRVVSN 90 (1134)
Q Consensus 12 ~~~~v~lp~~l~~~l~~~~~~~~~~q~~~~e~~~~~~-~~~~~~w~g~~s~~~~iei~~~~a~~~gl~~~~~v~~~~~~~ 90 (1134)
.+-=|-||++..+.|.+.+.. --...||++... +..|+||-..++..+.|.+.+-+.++|||.+|+.|.|+.. +
T Consensus 39 ~GdKI~LP~SaL~~L~~~~i~----~Pm~F~l~n~~~~r~th~GVlEFsA~EG~i~lP~wmm~~L~l~~gd~V~v~~~-~ 113 (190)
T 2yuj_A 39 KGGKIIMPPSALDQLSRLNIT----YPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESV-N 113 (190)
T ss_dssp TTTEEECCHHHHHHHHHTTCC----SSCEEEEEETTTTEEEEEEEEECCCBTTBEECCSHHHHHHTCCTTEEEEEEEE-C
T ss_pred CCCeEECcHHHHHHHHHCCCC----cCeEEEEecCCCCceEEEEEEEEecCCCeEEeCHHHHHhcCCCCCCEEEEEEe-e
Confidence 344578999999999876543 236778887643 4799999999888899999999999999999999999965 8
Q ss_pred CccceEEEEecCCcchHHHHHhcHHHHHHHHhcccceecCCCEEEEEecCceEEEEEEcccCCCCCeEEccCCCEEEEec
Q 001162 91 VLKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVVQLVPGTEVAVAP 170 (1134)
Q Consensus 91 ~~~~~~v~veP~t~dDwei~e~~a~~~e~~ll~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~l~~~tev~vap 170 (1134)
.|.++.|.++|+++|-|+| +-+-+.||.+|-+... ++.|.++++|- ++..-+|.|..+.|+..+..+..|-||=++|
T Consensus 114 LPkgt~vklqP~~~~Fl~i-~npKavLE~~Lrnfst-LT~Gd~I~I~~-~~~~y~l~V~e~kP~~aV~IidTDl~vDf~p 190 (190)
T 2yuj_A 114 LQVATYSKFQPQSPDFLDI-TNPKAVLENALRNFAC-LTTGDVIAINY-NEKIYELRVMETKPDKAVSIIECDMNVDFDA 190 (190)
T ss_dssp CCCCSEEEEEESSHHHHHS-SCHHHHHHHHHTTCCE-ECTTCEEEEES-SSCEEEEEEEEESSSSSEECSSCCCEEEECC
T ss_pred cCCCcEEEEEECCcccccc-ccHHHHHHHHHhcCcc-cccCCEEEEEe-CCEEEEEEEEEEcCCCeEEEEeCCEEEEecC
Confidence 9999999999999999997 8999999999987554 99999999998 5688899999999998899999999998877
No 165
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.04 E-value=3.5e-10 Score=102.97 Aligned_cols=77 Identities=17% Similarity=0.272 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhh
Q 001162 1013 SPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASK 1092 (1134)
Q Consensus 1013 ~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~ 1092 (1134)
+.++|.+||+.+++++++..++|++.||..|+||||+||.++|++|++.|+++. ...|+.+||..|++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~-----------~~~i~~~df~~Al~~ 70 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR-----------RKVATEKDFLKAVDK 70 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS-----------CSSBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc-----------cccCCHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999872 246999999999999
Q ss_pred cCCCCcHH
Q 001162 1093 ARPSVSEA 1100 (1134)
Q Consensus 1093 ~~ps~~~~ 1100 (1134)
+.++....
T Consensus 71 v~~~~~~~ 78 (88)
T 3vlf_B 71 VISGYKKF 78 (88)
T ss_dssp HTC-----
T ss_pred HhcCcccc
Confidence 99887654
No 166
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.04 E-value=4e-10 Score=100.25 Aligned_cols=75 Identities=31% Similarity=0.464 Sum_probs=68.5
Q ss_pred CCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHH
Q 001162 1010 DFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSI 1089 (1134)
Q Consensus 1010 ~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~a 1089 (1134)
|+|+.++|.+||+.+++++++..++|++.||..|+||||+||.++|++|++.|+++ +...|+.+||..|
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~-----------~~~~i~~~d~~~A 69 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE-----------RRVHVTQEDFEMA 69 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT-----------TCSEECHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-----------CCCCCCHHHHHHH
Confidence 68999999999999999999888999999999999999999999999999999876 2357999999999
Q ss_pred HhhcCC
Q 001162 1090 ASKARP 1095 (1134)
Q Consensus 1090 l~~~~p 1095 (1134)
++.+..
T Consensus 70 l~~v~~ 75 (78)
T 3kw6_A 70 VAKVMQ 75 (78)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 987643
No 167
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.03 E-value=1.1e-10 Score=116.56 Aligned_cols=84 Identities=8% Similarity=0.092 Sum_probs=60.9
Q ss_pred ccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccc
Q 001162 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1134)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~ 634 (1134)
+++|.+..+.++.+.+..+.. .+.++||+||||||||++|+++++... ++++++|..+..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~-------------~~~~vll~G~~GtGKt~lA~~i~~~~~-------~~~~~~~~~~~~ 64 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK-------------RTSPVFLTGEAGSPFETVARYFHKNGT-------PWVSPARVEYLI 64 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT-------------CSSCEEEEEETTCCHHHHHGGGCCTTS-------CEECCSSTTHHH
T ss_pred CceeCCHHHHHHHHHHHHHhC-------------CCCcEEEECCCCccHHHHHHHHHHhCC-------CeEEechhhCCh
Confidence 456788888888888765442 235699999999999999999998643 678889987653
Q ss_pred cchhhHHHHHHHHHHHHhhcCCeEEEEcccchhc
Q 001162 635 EKGPIIRQALSNFISEALDHAPSIVIFDNLDSII 668 (1134)
Q Consensus 635 ~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~ 668 (1134)
.. ....+..+ .+++|||||+|.+.
T Consensus 65 ~~-------~~~~~~~a---~~~~l~lDei~~l~ 88 (143)
T 3co5_A 65 DM-------PMELLQKA---EGGVLYVGDIAQYS 88 (143)
T ss_dssp HC-------HHHHHHHT---TTSEEEEEECTTCC
T ss_pred Hh-------hhhHHHhC---CCCeEEEeChHHCC
Confidence 22 33445544 35799999999884
No 168
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.94 E-value=2.7e-08 Score=138.45 Aligned_cols=134 Identities=16% Similarity=0.226 Sum_probs=89.6
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchhccC
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1134)
.+..+.||+|||||.+++.+|+.++ .+++.++|+.-... .. +..+|..+.. .++..+|||++++-
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lg------r~~~vfnC~~~~d~--~~----~g~i~~G~~~-~GaW~cfDEfNrl~-- 669 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLG------RFVLVFCCDEGFDL--QA----MSRIFVGLCQ-CGAWGCFDEFNRLE-- 669 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT------CCEEEEECSSCCCH--HH----HHHHHHHHHH-HTCEEEEETTTSSC--
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhC------CeEEEEeCCCCCCH--HH----HHHHHhhHhh-cCcEEEehhhhcCC--
Confidence 3467999999999999999999999 78889999874432 12 3333433332 34688999999873
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccc--------cccccCCCcEEEEEecCC----CCCCChhhccCCCccccccC
Q 001162 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEK--------RKSSCGIGPIAFVASAQS----LEKIPQSLTSSGRFDFHVQL 738 (1134)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~--------~~~~~~~~~V~vIattn~----~~~Ld~aL~~~gRF~~~i~l 738 (1134)
.+....+..++..+...+... +........+.+++|.|+ ...+++.|+. ||- .+.+
T Consensus 670 ---------~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lFr-~v~m 737 (3245)
T 3vkg_A 670 ---------ERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LFR-SMAM 737 (3245)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TEE-EEEC
T ss_pred ---------HHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hcE-EEEE
Confidence 222233444444333332221 111112235788889884 4579999998 885 7999
Q ss_pred CCCCHHHHHHHHH
Q 001162 739 PAPAASERKAILE 751 (1134)
Q Consensus 739 ~~P~~eeR~~IL~ 751 (1134)
..||.+...+|+-
T Consensus 738 ~~Pd~~~i~ei~L 750 (3245)
T 3vkg_A 738 IKPDREMIAQVML 750 (3245)
T ss_dssp CSCCHHHHHHHHH
T ss_pred eCCCHHHHHHHHH
Confidence 9999999888864
No 169
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.92 E-value=3.6e-09 Score=119.02 Aligned_cols=130 Identities=12% Similarity=0.087 Sum_probs=90.7
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhc----CCeEEEEcccch
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDH----APSIVIFDNLDS 666 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~----~PsIL~IDEiD~ 666 (1134)
.++|||||||+|||++++++|+.+.........+..++++.- ....+ .++++++.+... ...|+||||+|.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-~~~id----~ir~li~~~~~~p~~~~~kvviIdead~ 93 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-NIGID----DIRTIKDFLNYSPELYTRKYVIVHDCER 93 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-CBCHH----HHHHHHHHHTSCCSSSSSEEEEETTGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-CCCHH----HHHHHHHHHhhccccCCceEEEeccHHH
Confidence 569999999999999999999875311101134566665421 11222 244555555422 246999999999
Q ss_pred hccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHH
Q 001162 667 IISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASER 746 (1134)
Q Consensus 667 L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR 746 (1134)
+.. ...+.|+..+++... .+++|.+|+.++.+.+.+++ | .++|++|+.++.
T Consensus 94 lt~---------------~a~naLLk~LEep~~---------~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i 144 (305)
T 2gno_A 94 MTQ---------------QAANAFLKALEEPPE---------YAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEF 144 (305)
T ss_dssp BCH---------------HHHHHTHHHHHSCCT---------TEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHH
T ss_pred hCH---------------HHHHHHHHHHhCCCC---------CeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHH
Confidence 841 234566777776432 36778888888999999999 7 889999999999
Q ss_pred HHHHHHHh
Q 001162 747 KAILEHEI 754 (1134)
Q Consensus 747 ~~IL~~~l 754 (1134)
.+.+...+
T Consensus 145 ~~~L~~~~ 152 (305)
T 2gno_A 145 RDLVKEKI 152 (305)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998766
No 170
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.88 E-value=2.2e-08 Score=123.47 Aligned_cols=139 Identities=17% Similarity=0.229 Sum_probs=86.8
Q ss_pred CCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccc------------cccCCCcEEEEEecCCC--C
Q 001162 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRK------------SSCGIGPIAFVASAQSL--E 720 (1134)
Q Consensus 655 ~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~------------~~~~~~~V~vIattn~~--~ 720 (1134)
.+++|||||+|.+.+ .....|++.++...-... ......++.+|+++|+. +
T Consensus 201 ~~gvL~LDEi~~l~~---------------~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~ 265 (604)
T 3k1j_A 201 HKGVLFIDEIATLSL---------------KMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVD 265 (604)
T ss_dssp TTSEEEETTGGGSCH---------------HHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHH
T ss_pred CCCEEEEechhhCCH---------------HHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHh
Confidence 467999999999731 344555555553211000 00011257899999975 6
Q ss_pred CCChhhccCCCcc---ccccCCCC---CHHHHHHHHHHHhhh-----cccCCCHHHHHHHhhhc---CCC------Chhh
Q 001162 721 KIPQSLTSSGRFD---FHVQLPAP---AASERKAILEHEIQR-----RSLECSDEILLDVASKC---DGY------DAYD 780 (1134)
Q Consensus 721 ~Ld~aL~~~gRF~---~~i~l~~P---~~eeR~~IL~~~l~~-----~~l~~~~~~l~~la~~t---eG~------s~~D 780 (1134)
.++++|++ ||. ..+.|+.. +.+.+..+++.+... ....++++.+..+.... .|- +.++
T Consensus 266 ~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~ 343 (604)
T 3k1j_A 266 KMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRD 343 (604)
T ss_dssp HSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHH
T ss_pred hcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHH
Confidence 79999999 886 34555432 345566666544432 12467888888777654 442 6899
Q ss_pred HHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhh
Q 001162 781 LEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMH 821 (1134)
Q Consensus 781 L~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~ 821 (1134)
+.++++.|...|..+ ....++.+|+..|+.
T Consensus 344 l~~llr~A~~~A~~~-----------~~~~I~~edv~~A~~ 373 (604)
T 3k1j_A 344 LGGIVRAAGDIAVKK-----------GKKYVEREDVIEAVK 373 (604)
T ss_dssp HHHHHHHHHHHHHHT-----------TCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-----------CcccccHHHHHHHHH
Confidence 999999987666433 224577888877764
No 171
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.82 E-value=1.1e-09 Score=98.27 Aligned_cols=79 Identities=25% Similarity=0.284 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHccCCCCCcccHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhc-
Q 001162 1015 RERLDILKVISRKLPLADDVDLEAIAHMTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA- 1093 (1134)
Q Consensus 1015 ~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~- 1093 (1134)
++|.+||+.+++++++..++|++.||..|+||||+||.++|++|++.|+++. ...|+.+||..|+..+
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~-----------~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN-----------RYVILQSDLEEAYATQV 69 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT-----------CSEECHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------cCCcCHHHHHHHHHHHH
Confidence 4789999999999988889999999999999999999999999999998862 3579999999999998
Q ss_pred CCCCcHHHHHH
Q 001162 1094 RPSVSEAEKLR 1104 (1134)
Q Consensus 1094 ~ps~~~~~~~~ 1104 (1134)
+++.+++++..
T Consensus 70 ~~~~~~~~~~~ 80 (82)
T 2dzn_B 70 KTDNTVDKFDF 80 (82)
T ss_dssp C----------
T ss_pred cCcCChHHHHh
Confidence 57777666543
No 172
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.74 E-value=8.3e-09 Score=106.70 Aligned_cols=98 Identities=16% Similarity=0.191 Sum_probs=60.5
Q ss_pred CCCCCCCCC----hhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc----CCcEEEEeC
Q 001162 840 RSGWDDVGG----LTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKG 911 (1134)
Q Consensus 840 ~~~~~~i~g----l~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~----~~~~i~i~~ 911 (1134)
+..|+++.+ +..+.+.+.+++.. .....+.+++|+||||||||++++++++.+ |..++.++.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHN----------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHS----------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHh----------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 356666654 33444444444432 223345689999999999999999999877 667777888
Q ss_pred cccchhcccccHH-HHHHHHHHhhhcCCeEEEEcCcccc
Q 001162 912 PELLNKYIGASEQ-AVRDIFSKATAAAPCLLFFDEFDSI 949 (1134)
Q Consensus 912 ~el~~~~~G~se~-~v~~lf~~A~~~~P~VLfiDEid~l 949 (1134)
.++...+...... ....+++. -..|.+|+|||++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 76 KDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred HHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 7776543211000 00012222 235789999999854
No 173
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.73 E-value=4.6e-07 Score=103.04 Aligned_cols=188 Identities=13% Similarity=0.137 Sum_probs=115.6
Q ss_pred cccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccc
Q 001162 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (1134)
Q Consensus 554 ~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~ 633 (1134)
..+.|.+..++.+.+.+.. .+.++|+||+|+|||+|++.+++.++ +++++|....
T Consensus 12 ~~~~gR~~el~~L~~~l~~-----------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--------~~~~~~~~~~ 66 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN-----------------YPLTLLLGIRRVGKSSLLRAFLNERP--------GILIDCRELY 66 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH-----------------CSEEEEECCTTSSHHHHHHHHHHHSS--------EEEEEHHHHH
T ss_pred HhcCChHHHHHHHHHHHhc-----------------CCeEEEECCCcCCHHHHHHHHHHHcC--------cEEEEeeccc
Confidence 4567888888887765432 14699999999999999999998752 4566664321
Q ss_pred c-----cc-----------------------------------hhhHHHHHHHHHHHHhhcCCeEEEEcccchhccCCCC
Q 001162 634 L-----EK-----------------------------------GPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSD 673 (1134)
Q Consensus 634 ~-----~~-----------------------------------~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~ 673 (1134)
. .. .......+..+...+....|.+|+|||++.+....
T Consensus 67 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~-- 144 (350)
T 2qen_A 67 AERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG-- 144 (350)
T ss_dssp HTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT--
T ss_pred ccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC--
Confidence 0 00 01112222222222222348999999999985210
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCC---------ChhhccCCCccccccCCCCCHH
Q 001162 674 PEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI---------PQSLTSSGRFDFHVQLPAPAAS 744 (1134)
Q Consensus 674 ~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L---------d~aL~~~gRF~~~i~l~~P~~e 744 (1134)
. .....+...|....+... ++.+|.++.....+ ...+. +|+...+.+++.+.+
T Consensus 145 ~------~~~~~~~~~L~~~~~~~~----------~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~ 206 (350)
T 2qen_A 145 S------RGGKELLALFAYAYDSLP----------NLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKD 206 (350)
T ss_dssp T------TTTHHHHHHHHHHHHHCT----------TEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHH
T ss_pred c------cchhhHHHHHHHHHHhcC----------CeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHH
Confidence 0 001134455555554421 35566555432111 11122 255568899999999
Q ss_pred HHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHH
Q 001162 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (1134)
Q Consensus 745 eR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~ 787 (1134)
+..+++...+...+..++++.+..+...+.|+ |.-+..++..
T Consensus 207 e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~-P~~l~~~~~~ 248 (350)
T 2qen_A 207 TSVEFLKRGFREVNLDVPENEIEEAVELLDGI-PGWLVVFGVE 248 (350)
T ss_dssp HHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC-HHHHHHHHHH
Confidence 99999998777666677888889999999985 5556555543
No 174
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.71 E-value=7.5e-09 Score=115.55 Aligned_cols=121 Identities=21% Similarity=0.259 Sum_probs=80.0
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHcCC--cEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccC
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--RFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~~~--~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~ 951 (1134)
++.++..++|+||||||||++|..+|...|. .|+.....+.++.|....+..+..+++...... +||||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 3445556899999999999999999987554 466663355555555555666666776666554 999999999966
Q ss_pred CCCC-CCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhh
Q 001162 952 KRGH-DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAAL 997 (1134)
Q Consensus 952 ~r~~-~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~al 997 (1134)
.... ...+...+.+.+++..|.++....++.+|++|| |...|+++
T Consensus 197 ~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 5432 112223566788888887766666788888888 55555554
No 175
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.68 E-value=3e-08 Score=99.57 Aligned_cols=104 Identities=14% Similarity=0.206 Sum_probs=67.6
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCC
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRG 954 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~ 954 (1134)
...++|+||+|+|||+++++++..+ |...+.+++.++... +....|.+|+|||++.+...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~-- 98 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE-- 98 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH--
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH--
Confidence 4579999999999999999999987 777888998887543 11235789999999886332
Q ss_pred CCCCcchhhHHHhHhhhcccccccccE-EEEEecCCCCccc--hhhcCcCcccceeec
Q 001162 955 HDNTGVTDRVVNQFLTELDGVEVLTGV-FVFAATSRPDLLD--AALLRPGRLDRLLFC 1009 (1134)
Q Consensus 955 ~~~~~~~~rv~~~lL~~ld~~~~~~~v-~vIatTn~p~~ld--~allrpgRfd~~i~~ 1009 (1134)
. ...+...++........ +|+++...|..+. +.+.+ ||..-+.+
T Consensus 99 ------~---~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~~ 145 (149)
T 2kjq_A 99 ------E---QALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLVY 145 (149)
T ss_dssp ------H---HHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEEC
T ss_pred ------H---HHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHH--HHhcCeeE
Confidence 1 22333333332333333 5554443455432 77777 77654444
No 176
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.66 E-value=5.2e-08 Score=113.49 Aligned_cols=181 Identities=18% Similarity=0.237 Sum_probs=107.5
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcC---CcEEEEeCcccchh-------------cccccHHHHHHHHHHhhhcCCeEEE
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACS---LRFISVKGPELLNK-------------YIGASEQAVRDIFSKATAAAPCLLF 942 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~---~~~i~i~~~el~~~-------------~~G~se~~v~~lf~~A~~~~P~VLf 942 (1134)
..++++|++||||+++|+++..... .+|+.++|+.+-.. |.|.... ....|+.|.++ +||
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~-~~g~~~~a~~g---tlf 236 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS-KEGFFELADGG---TLF 236 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSC-BCCHHHHTTTS---EEE
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccc-cCCceeeCCCc---EEE
Confidence 4689999999999999999998774 78999999876321 2222211 23567777665 999
Q ss_pred EcCcccccCCCCCCCCcchhhHHHhHhhhccccc---------ccccEEEEEecCCCCc-------cchhhcCcCccc-c
Q 001162 943 FDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---------VLTGVFVFAATSRPDL-------LDAALLRPGRLD-R 1005 (1134)
Q Consensus 943 iDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~---------~~~~v~vIatTn~p~~-------ld~allrpgRfd-~ 1005 (1134)
||||+.+ ...+...|+..|+.-. ....+.||+|||+.-. +.+.|.. |+. .
T Consensus 237 ldei~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~ 303 (387)
T 1ny5_A 237 LDEIGEL-----------SLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RLGVI 303 (387)
T ss_dssp EESGGGC-----------CHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTE
T ss_pred EcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCC
Confidence 9999998 3456666776665311 1124778899987421 1222222 332 2
Q ss_pred eeecCCCC--HHHHHHHHHHHHc----cCCCC-CcccHHHHHHhc-cCCcH--HHHHHHHHHHHHHHHHHHHhccCCCCC
Q 001162 1006 LLFCDFPS--PRERLDILKVISR----KLPLA-DDVDLEAIAHMT-EGFSG--ADLQALLSDAQLSAVHEILNNIDSNEP 1075 (1134)
Q Consensus 1006 ~i~~~~p~--~~er~~Il~~~~~----~~~~~-~~vd~~~La~~t-~g~sg--~dl~~l~~~A~~~a~~~~~~~~~~~~~ 1075 (1134)
.|.+|+.. .++...+.+.+++ +.+.. ..++.+.+.... ..+.| ++|++++..|...+
T Consensus 304 ~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~------------- 370 (387)
T 1ny5_A 304 EIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS------------- 370 (387)
T ss_dssp EEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC-------------
T ss_pred eecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC-------------
Confidence 23444432 2444455555443 33322 234544444433 33554 58888777665532
Q ss_pred CCcccccHHHHHHHH
Q 001162 1076 GKMPVITDALLKSIA 1090 (1134)
Q Consensus 1076 ~~~~~it~e~l~~al 1090 (1134)
....|+.+|+...+
T Consensus 371 -~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 371 -EGKFIDRGELSCLV 384 (387)
T ss_dssp -CSSEECHHHHHHHC
T ss_pred -CCCcCcHHHCcHhh
Confidence 12468888887544
No 177
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.65 E-value=6.2e-08 Score=112.85 Aligned_cols=202 Identities=13% Similarity=0.157 Sum_probs=121.2
Q ss_pred ccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccc
Q 001162 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1134)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~ 634 (1134)
.+.|....+.++.+.+..+... ...+||+|++|||||++|++++....... .+++.++|..+..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~-------------~~~vli~Ge~GtGK~~lAr~ih~~s~r~~---~~fv~v~~~~~~~ 201 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCA-------------ECPVLITGESGVGKEVVARLIHKLSDRSK---EPFVALNVASIPR 201 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTC-------------CSCEEEECSTTSSHHHHHHHHHHHSTTTT---SCEEEEETTTSCH
T ss_pred hhhhccHHhhHHHHHHHHhcCC-------------CCCeEEecCCCcCHHHHHHHHHHhcCCCC---CCeEEEecCCCCH
Confidence 4566677788888877664432 25589999999999999999998754322 5788999987643
Q ss_pred cchhh---------HHH---HHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--cc
Q 001162 635 EKGPI---------IRQ---ALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EK 700 (1134)
Q Consensus 635 ~~~~~---------~~~---~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~--~~ 700 (1134)
..... ... .-...|+.| ..++|||||++.+- . .+...|.+.++.-. ..
T Consensus 202 ~~~~~elfg~~~g~~tga~~~~~g~~~~a---~~gtlfldei~~l~-----------~----~~q~~Ll~~l~~~~~~~~ 263 (387)
T 1ny5_A 202 DIFEAELFGYEKGAFTGAVSSKEGFFELA---DGGTLFLDEIGELS-----------L----EAQAKLLRVIESGKFYRL 263 (387)
T ss_dssp HHHHHHHHCBCTTSSTTCCSCBCCHHHHT---TTSEEEEESGGGCC-----------H----HHHHHHHHHHHHSEECCB
T ss_pred HHHHHHhcCCCCCCCCCcccccCCceeeC---CCcEEEEcChhhCC-----------H----HHHHHHHHHHhcCcEEeC
Confidence 21100 000 001123333 24699999999983 2 33444555554321 11
Q ss_pred cccccCCCcEEEEEecCCC-------CCCChhhccCCCcc-ccccCCCCCH--HHHHHHHHHHhhhc----c---cCCCH
Q 001162 701 RKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQRR----S---LECSD 763 (1134)
Q Consensus 701 ~~~~~~~~~V~vIattn~~-------~~Ld~aL~~~gRF~-~~i~l~~P~~--eeR~~IL~~~l~~~----~---l~~~~ 763 (1134)
........++.+|++||.. ..+.+.|.. |+. ..+++|+... ++...++..++... + ..+++
T Consensus 264 g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~ 341 (387)
T 1ny5_A 264 GGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTK 341 (387)
T ss_dssp TCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECH
T ss_pred CCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCH
Confidence 1111112257899999862 122333332 332 2345555543 56666666655431 2 23788
Q ss_pred HHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 001162 764 EILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1134)
Q Consensus 764 ~~l~~la~~teG~s~~DL~~Lv~~a~~~a 792 (1134)
+.+..+..+..-.+.++|++++++++..+
T Consensus 342 ~a~~~l~~~~wpGNvreL~~~i~~~~~~~ 370 (387)
T 1ny5_A 342 SAQELLLSYPWYGNVRELKNVIERAVLFS 370 (387)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 89998888775557889999999988644
No 178
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.61 E-value=7.2e-07 Score=103.04 Aligned_cols=201 Identities=14% Similarity=0.160 Sum_probs=123.2
Q ss_pred ccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccc
Q 001162 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1134)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~ 634 (1134)
.+.|....+.++.+.+..+.... ..+|++|++||||+++|+++........ .++.++|..+..
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~~-------------~~vli~GesGtGKe~lAr~ih~~s~r~~----~fv~vnc~~~~~ 192 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKSK-------------APVLITGESGTGKEIVARLIHRYSGRKG----AFVDLNCASIPQ 192 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTSC-------------SCEEEECCTTSSHHHHHHHHHHHHCCCS----CEEEEESSSSCT
T ss_pred cccccchHHHHHHhhhhhhhccc-------------hhheEEeCCCchHHHHHHHHHHhccccC----CcEEEEcccCCh
Confidence 45667777777777665544322 4599999999999999999998765332 288999998754
Q ss_pred cchhhH---------HH---HHHHHHHHHhhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhc--cc
Q 001162 635 EKGPII---------RQ---ALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EK 700 (1134)
Q Consensus 635 ~~~~~~---------~~---~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~--~~ 700 (1134)
...... .. .-...|+.| ..+.|||||++.+- . .+...|+..++.-. ..
T Consensus 193 ~~~~~~lfg~~~g~~tga~~~~~g~~~~a---~~gtlfldei~~l~-----------~----~~Q~~Ll~~l~~~~~~~~ 254 (368)
T 3dzd_A 193 ELAESELFGHEKGAFTGALTRKKGKLELA---DQGTLFLDEVGELD-----------Q----RVQAKLLRVLETGSFTRL 254 (368)
T ss_dssp TTHHHHHHEECSCSSSSCCCCEECHHHHT---TTSEEEEETGGGSC-----------H----HHHHHHHHHHHHSEECCB
T ss_pred HHHHHHhcCccccccCCcccccCChHhhc---CCCeEEecChhhCC-----------H----HHHHHHHHHHHhCCcccC
Confidence 322110 00 001123333 34689999999983 1 34445555555321 11
Q ss_pred cccccCCCcEEEEEecCCC-------CCCChhhccCCCcc-ccccCCCCCH--HHHHHHHHHHhhhc----c---cCCCH
Q 001162 701 RKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQRR----S---LECSD 763 (1134)
Q Consensus 701 ~~~~~~~~~V~vIattn~~-------~~Ld~aL~~~gRF~-~~i~l~~P~~--eeR~~IL~~~l~~~----~---l~~~~ 763 (1134)
.......-++.+|++||.. ..+.+.|.. |+. ..+++|+... ++...++..++... + ..+++
T Consensus 255 g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~ 332 (368)
T 3dzd_A 255 GGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSE 332 (368)
T ss_dssp TCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCH
T ss_pred CCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 1101111257889998851 122233333 333 2466777765 67777777665432 2 34889
Q ss_pred HHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 001162 764 EILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1134)
Q Consensus 764 ~~l~~la~~teG~s~~DL~~Lv~~a~~~a 792 (1134)
+.+..+..+..-.+.++|++++++++..+
T Consensus 333 ~a~~~L~~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 333 ETKEYLMKQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp HHHHHHHTCCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 99999998875557899999999987543
No 179
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.59 E-value=1.5e-06 Score=98.93 Aligned_cols=183 Identities=17% Similarity=0.166 Sum_probs=107.6
Q ss_pred cccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccc
Q 001162 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (1134)
Q Consensus 554 ~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~ 633 (1134)
..+.|.+..++.+.+ + . . +.++|+||+|+|||+|++.+++.+. ..+.+++|....
T Consensus 13 ~~~~gR~~el~~L~~-l----~-----------~---~~v~i~G~~G~GKT~L~~~~~~~~~------~~~~~~~~~~~~ 67 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-L----R-----------A---PITLVLGLRRTGKSSIIKIGINELN------LPYIYLDLRKFE 67 (357)
T ss_dssp GGSCCCHHHHHHHHH-T----C-----------S---SEEEEEESTTSSHHHHHHHHHHHHT------CCEEEEEGGGGT
T ss_pred HHhcChHHHHHHHHH-h----c-----------C---CcEEEECCCCCCHHHHHHHHHHhcC------CCEEEEEchhhc
Confidence 456778877776654 3 1 1 3699999999999999999999875 235677766431
Q ss_pred ---ccchh----hH---------------------------------------HHHHHHHHHHHhhc--CCeEEEEcccc
Q 001162 634 ---LEKGP----II---------------------------------------RQALSNFISEALDH--APSIVIFDNLD 665 (1134)
Q Consensus 634 ---~~~~~----~~---------------------------------------~~~l~~~f~~a~~~--~PsIL~IDEiD 665 (1134)
..... .+ ...+..++...... .|.+|+|||++
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~ 147 (357)
T 2fna_A 68 ERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQ 147 (357)
T ss_dssp TCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGG
T ss_pred cccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHH
Confidence 00000 00 00122233322221 48899999999
Q ss_pred hhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCC---------hhhccCCCccccc
Q 001162 666 SIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIP---------QSLTSSGRFDFHV 736 (1134)
Q Consensus 666 ~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld---------~aL~~~gRF~~~i 736 (1134)
.+... .. . .+...+....+... ++.+|.+++....+. ..+. +|+...+
T Consensus 148 ~~~~~----~~---~----~~~~~l~~~~~~~~----------~~~~i~~g~~~~~l~~~l~~~~~~~~l~--~r~~~~i 204 (357)
T 2fna_A 148 ELVKL----RG---V----NLLPALAYAYDNLK----------RIKFIMSGSEMGLLYDYLRVEDPESPLF--GRAFSTV 204 (357)
T ss_dssp GGGGC----TT---C----CCHHHHHHHHHHCT----------TEEEEEEESSHHHHHHHTTTTCTTSTTT--TCCCEEE
T ss_pred Hhhcc----Cc---h----hHHHHHHHHHHcCC----------CeEEEEEcCchHHHHHHHhccCCCCccc--cCcccee
Confidence 98531 00 0 12233333333321 356666665432111 1122 2555688
Q ss_pred cCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHH
Q 001162 737 QLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (1134)
Q Consensus 737 ~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~ 787 (1134)
.+++++.++..+++...+...+...++. ..+...|.|+ |.-+..++..
T Consensus 205 ~l~~l~~~e~~~~l~~~~~~~~~~~~~~--~~i~~~t~G~-P~~l~~~~~~ 252 (357)
T 2fna_A 205 ELKPFSREEAIEFLRRGFQEADIDFKDY--EVVYEKIGGI-PGWLTYFGFI 252 (357)
T ss_dssp EECCCCHHHHHHHHHHHHHHHTCCCCCH--HHHHHHHCSC-HHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCCCcH--HHHHHHhCCC-HHHHHHHHHH
Confidence 9999999999999998776544444443 7788888885 5556665544
No 180
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=98.52 E-value=2.7e-06 Score=87.82 Aligned_cols=158 Identities=19% Similarity=0.231 Sum_probs=126.0
Q ss_pred eeEEEEeCCcccceeeCCHHHHHHHhcccccCCCCceEEEEEEeCCC-CeEEEEecCccCCCCceEecHHHHhhcCCCCC
Q 001162 2 ELEVRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSN-QRWVVAWSGATSSSSFIEVARQFAECISLADH 80 (1134)
Q Consensus 2 ~~~v~~~~~~~~~~v~lp~~l~~~l~~~~~~~~~~q~~~~e~~~~~~-~~~~~~w~g~~s~~~~iei~~~~a~~~gl~~~ 80 (1134)
.|.|.=...-.++.|+|++.....|.-. +-+ .|+|....+ ..+...|.+.....+.|-||...=+.+|...|
T Consensus 25 ~l~V~ea~~~D~givrl~p~~m~~Lgl~------~GD-~V~I~Gkr~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iG 97 (187)
T 3tiw_A 25 RLIVDEAINEDNSVVSLSQPKMDELQLF------RGD-TVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLG 97 (187)
T ss_dssp EEEEEECSSCCTTEEEECHHHHHHHTCC------TTC-EEEEECSTTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTT
T ss_pred eEEEcccccCCCcEEEECHHHHHHcCCC------CCC-EEEEECCCCCeEEEEEEECCCCCCCEEEeCHHHHhhcCCCCC
Confidence 3455444444588999999999998842 233 578876543 47788899876666899999999999999999
Q ss_pred CEEEEEEeeCCccceEEEEecCCcchHHHHHhc--HHHHHHHHhcccceecCCCEEEEEecCceEEEEEEcccCCCCCeE
Q 001162 81 TIVQVRVVSNVLKATLVTIEPLTEDDWEVLELN--SEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVV 158 (1134)
Q Consensus 81 ~~v~~~~~~~~~~~~~v~veP~t~dDwei~e~~--a~~~e~~ll~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~ 158 (1134)
+.|.|+.+.+++.|+.|.+.|. .|..+-+.-+ ..||...|+..-|.|..|..|++-. ....+.|+|+++.|+ .++
T Consensus 98 D~V~V~~~~~v~~A~~V~LaP~-~~~i~~i~~~~~~~~lk~~l~~~~rpV~~GD~i~v~~-~~~~v~f~Vv~t~P~-~~v 174 (187)
T 3tiw_A 98 DVISIQPCPDVKYGKRIHVLPI-DDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRG-GMRAVEFKVVETDPS-PYC 174 (187)
T ss_dssp CEEEEEECTTCEECSEEEEEEC-CCC-----CCHHHHTHHHHHTTTCCEEETTCEEEEEC-SSSEEEEEEEEEESS-SEE
T ss_pred CEEEEEECCCCCCceEEEEecc-ccchhhccchhHHHHHHHHhccCCceeeCCCEEEEcc-CCCEEEEEEEEecCC-CCE
Confidence 9999999889999999999996 4556634333 7899999998889999999999987 455789999999996 699
Q ss_pred EccCCCEEEEe
Q 001162 159 QLVPGTEVAVA 169 (1134)
Q Consensus 159 ~l~~~tev~va 169 (1134)
.++++|+|.+.
T Consensus 175 ~V~~~T~I~~e 185 (187)
T 3tiw_A 175 IVAPDTVIHCE 185 (187)
T ss_dssp ECCTTCEEECC
T ss_pred EECCCcEEEec
Confidence 99999999863
No 181
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.51 E-value=4e-07 Score=106.02 Aligned_cols=209 Identities=16% Similarity=0.114 Sum_probs=117.5
Q ss_pred CCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHH-HHHcCCcEEEEeC--c---ccchhc-
Q 001162 846 VGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAA-AAACSLRFISVKG--P---ELLNKY- 918 (1134)
Q Consensus 846 i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~al-A~~~~~~~i~i~~--~---el~~~~- 918 (1134)
|.|++.+|+.|.-.+...-.. .+...|+||.|+||| ||++|+++ ++.+....+ ..+ + .+....
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~f-t~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVY-VDLRRTELTDLTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEE-EEGGGCCHHHHSEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEE-ecCCCCCccCceEEEE
Confidence 778899988887665532111 223348999999999 99999999 776543222 221 1 011000
Q ss_pred --ccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccc-------ccccccEEEEEecCC
Q 001162 919 --IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDG-------VEVLTGVFVFAATSR 989 (1134)
Q Consensus 919 --~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~-------~~~~~~v~vIatTn~ 989 (1134)
.| .. .-...+..|.++ |+|+|||+.+ .......|+..|+. ..-..++.||||+|.
T Consensus 285 ~~tG-~~-~~~G~l~LAdgG---vl~lDEIn~~-----------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP 348 (506)
T 3f8t_A 285 EDRG-WA-LRAGAAVLADGG---ILAVDHLEGA-----------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINP 348 (506)
T ss_dssp ESSS-EE-EEECHHHHTTTS---EEEEECCTTC-----------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECC
T ss_pred cCCC-cc-cCCCeeEEcCCC---eeehHhhhhC-----------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCc
Confidence 01 00 001234455554 9999999987 44566677776652 212346899999997
Q ss_pred CC-----------ccchhhcCcCccccee-ecCCCCHHHHH---------HHHH---HHHc--cC-CCCCcccHHHHHH-
Q 001162 990 PD-----------LLDAALLRPGRLDRLL-FCDFPSPRERL---------DILK---VISR--KL-PLADDVDLEAIAH- 1041 (1134)
Q Consensus 990 p~-----------~ld~allrpgRfd~~i-~~~~p~~~er~---------~Il~---~~~~--~~-~~~~~vd~~~La~- 1041 (1134)
.+ .|.+++++ |||-.+ ..+.|+.+.-. +.++ .+.+ .. +.-.+...+.+..
T Consensus 349 ~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~ 426 (506)
T 3f8t_A 349 GEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHW 426 (506)
T ss_dssp CC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHH
T ss_pred ccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHH
Confidence 65 57889999 998755 34555543311 1111 1222 11 1111111111211
Q ss_pred ----------------hccCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHhhc
Q 001162 1042 ----------------MTEGFSGADLQALLSDAQLSAVHEILNNIDSNEPGKMPVITDALLKSIASKA 1093 (1134)
Q Consensus 1042 ----------------~t~g~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~e~l~~al~~~ 1093 (1134)
..-|.|.+.+.++++-|.-.|..+ .+..++.+|+..|+.-+
T Consensus 427 y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~-----------gR~~V~~eDV~~Ai~L~ 483 (506)
T 3f8t_A 427 YETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMR-----------LSDDVEPEDVDIAAELV 483 (506)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHT-----------TCSEECHHHHHHHHHHH
T ss_pred HHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHc-----------CcCCCCHHHHHHHHHHH
Confidence 123677788888887666655443 34578999999888644
No 182
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.49 E-value=1.3e-07 Score=99.36 Aligned_cols=70 Identities=23% Similarity=0.319 Sum_probs=48.7
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhccccc-HHHHHHHHHHhhhcCCeEEEEcCccccc
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGAS-EQAVRDIFSKATAAAPCLLFFDEFDSIA 950 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~~G~s-e~~v~~lf~~A~~~~P~VLfiDEid~l~ 950 (1134)
.+++|+||||||||++|++++..+ +.+++.++++++...+.... ...+..++..... +.+|||||++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 689999999999999999999987 67888899887765432211 0012233333332 3599999997753
No 183
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.49 E-value=1.4e-07 Score=97.41 Aligned_cols=77 Identities=22% Similarity=0.287 Sum_probs=45.1
Q ss_pred CCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHH-HHHHHHHHHhhcCCeEEEEcccc
Q 001162 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ-ALSNFISEALDHAPSIVIFDNLD 665 (1134)
Q Consensus 587 ~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~-~l~~~f~~a~~~~PsIL~IDEiD 665 (1134)
...+.+++|+||+|||||+|++++++.+....+ ..+.++++..+.......... .....+.. ...|.+|+|||++
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~ 110 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG--IRGYFFDTKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLG 110 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC--CCCCEEEHHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC--CeEEEEEHHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCC
Confidence 344577999999999999999999998841111 234445555443211110000 00011111 2368899999997
Q ss_pred hh
Q 001162 666 SI 667 (1134)
Q Consensus 666 ~L 667 (1134)
..
T Consensus 111 ~~ 112 (180)
T 3ec2_A 111 SE 112 (180)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 184
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.47 E-value=2.2e-07 Score=97.83 Aligned_cols=128 Identities=19% Similarity=0.219 Sum_probs=79.0
Q ss_pred CceEEEcCCCCchhHHHHHHHHH--------cC-CcEEEEeCcccchhcc----------cccHH--HHHHHHHHh--hh
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAA--------CS-LRFISVKGPELLNKYI----------GASEQ--AVRDIFSKA--TA 935 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~--------~~-~~~i~i~~~el~~~~~----------G~se~--~v~~lf~~A--~~ 935 (1134)
.-.|++|+||||||++|..++.. .| .+++..+..++.-.++ ..... ....+++.+ ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 35789999999999999886544 24 5566666666543222 11111 112333332 23
Q ss_pred cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHH
Q 001162 936 AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPR 1015 (1134)
Q Consensus 936 ~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~ 1015 (1134)
+..+||+|||++.+++.+..... ..+ ++..+.. ....+.-||.+|+.++.+|.+++. |++..++++.|...
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e--~~r----ll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~~ 156 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSK--IPE----NVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKMG 156 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCC--CCH----HHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECSSC
T ss_pred cCceEEEEEChhhhccCccccch--hHH----HHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcccC
Confidence 45679999999999876532211 123 3444432 223344556667779999999988 99999998876433
No 185
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.47 E-value=1.3e-06 Score=99.39 Aligned_cols=185 Identities=15% Similarity=0.113 Sum_probs=109.2
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccc-----h-
Q 001162 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-----N- 916 (1134)
Q Consensus 843 ~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~-----~- 916 (1134)
-..+.|-++..+.|.+ +.. ..++++||+|+|||++++.+++..+..++.+++...- +
T Consensus 12 ~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISY 74 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCH
T ss_pred HHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCH
Confidence 3456777776666666 431 3799999999999999999999987778888775420 0
Q ss_pred --------------------------hccc-------c-------cHHHHHHHHHHhhhc--CCeEEEEcCcccccCCCC
Q 001162 917 --------------------------KYIG-------A-------SEQAVRDIFSKATAA--APCLLFFDEFDSIAPKRG 954 (1134)
Q Consensus 917 --------------------------~~~G-------~-------se~~v~~lf~~A~~~--~P~VLfiDEid~l~~~r~ 954 (1134)
...| . ....+..+++..... .|.+|+|||++.+....
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~- 153 (357)
T 2fna_A 75 KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR- 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT-
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC-
Confidence 0000 0 011234444433322 38999999999985410
Q ss_pred CCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchh-----h--cCcCcccceeecCCCCHHHHHHHHHHHHcc
Q 001162 955 HDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAA-----L--LRPGRLDRLLFCDFPSPRERLDILKVISRK 1027 (1134)
Q Consensus 955 ~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~a-----l--lrpgRfd~~i~~~~p~~~er~~Il~~~~~~ 1027 (1134)
... ....+..+... ..++.+|.|++....+... . .-.||+...+.+++.+.++..++++..+..
T Consensus 154 --~~~-~~~~l~~~~~~------~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~ 224 (357)
T 2fna_A 154 --GVN-LLPALAYAYDN------LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQE 224 (357)
T ss_dssp --TCC-CHHHHHHHHHH------CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_pred --chh-HHHHHHHHHHc------CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHH
Confidence 111 11222222221 1345555566543222211 0 012466678899999999999999887654
Q ss_pred CCCCCcccHHHHHHhccCCcHHHHHHHHH
Q 001162 1028 LPLADDVDLEAIAHMTEGFSGADLQALLS 1056 (1134)
Q Consensus 1028 ~~~~~~vd~~~La~~t~g~sg~dl~~l~~ 1056 (1134)
.+...+ +...+...+.|+.. -++.++.
T Consensus 225 ~~~~~~-~~~~i~~~t~G~P~-~l~~~~~ 251 (357)
T 2fna_A 225 ADIDFK-DYEVVYEKIGGIPG-WLTYFGF 251 (357)
T ss_dssp HTCCCC-CHHHHHHHHCSCHH-HHHHHHH
T ss_pred cCCCCC-cHHHHHHHhCCCHH-HHHHHHH
Confidence 333322 23778888888754 3444443
No 186
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.45 E-value=1.4e-07 Score=108.80 Aligned_cols=119 Identities=18% Similarity=0.202 Sum_probs=77.9
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccC-C
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAP-K 952 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~-~ 952 (1134)
+.+++..++|+||||+|||+++++++...+..++.+..++-. ....+. ......++|+||++.+.. .
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~------~~~~lg------~~~q~~~~l~dd~~~~~~~~ 232 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR------LNFELG------VAIDQFLVVFEDVKGTGGES 232 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT------HHHHHG------GGTTCSCEEETTCCCSTTTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh------HHHHHH------HhcchhHHHHHHHHHHHHHH
Confidence 556677899999999999999999999988877664443210 000111 112335789999999875 3
Q ss_pred CCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhhcCcCcccceeecCC
Q 001162 953 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDF 1011 (1134)
Q Consensus 953 r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~ 1011 (1134)
|+........ ....+...++| .+.|+.+||+++.+ +++++|||++..++...
T Consensus 233 r~l~~~~~~~-~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 233 RDLPSGQGIN-NLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTCCCCSHHH-HHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred hhccccCcch-HHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 3221111110 11333444443 35567789999999 79999999998877754
No 187
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.44 E-value=7.6e-07 Score=89.26 Aligned_cols=61 Identities=15% Similarity=0.275 Sum_probs=46.2
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccchh
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSI 667 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L 667 (1134)
+...++|+||+|+|||+|++++++.+.... ..++++++..+... +....|.+|+|||++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g---~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAG---KNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTT---CCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcC---CcEEEEcHHHhhHH---------------HHHhCCCEEEEeCcccc
Confidence 346799999999999999999999885321 34677887776644 11245789999999875
No 188
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=98.40 E-value=1.2e-06 Score=90.64 Aligned_cols=150 Identities=17% Similarity=0.153 Sum_probs=120.5
Q ss_pred cceeeCCHHHHHHHhcccccCCCCceEEEEEEeCCCCeEEEEecCccCC--CCceEecHHHHhhcCCCCCCEEEEEEeeC
Q 001162 13 NCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQRWVVAWSGATSS--SSFIEVARQFAECISLADHTIVQVRVVSN 90 (1134)
Q Consensus 13 ~~~v~lp~~l~~~l~~~~~~~~~~q~~~~e~~~~~~~~~~~~w~g~~s~--~~~iei~~~~a~~~gl~~~~~v~~~~~~~ 90 (1134)
.+-|+|++.....|.-. +-+ .|+|.. .+.+....|.+.... .+.|-||..+-+.+|+..|+.|.|+. .+
T Consensus 21 r~ivrl~p~~m~~Lgl~------~GD-~V~I~G-~r~t~a~v~~~~~ed~~~g~Irid~~~R~N~gv~iGD~V~V~~-~~ 91 (185)
T 1cz4_A 21 MSRVRLDESSRRLLDAE------IGD-VVEIEK-VRKTVGRVYRARPEDENKGIVRIDSVMRNNCGASIGDKVKVRK-VR 91 (185)
T ss_dssp SSEEEECHHHHHTTCCC------TTC-EEEEES-SSEEEEEEEECSSTTTTTSEEECCHHHHHHHTCCTTCEEEEEE-EC
T ss_pred CCEEEECHHHHHHcCCC------CCC-EEEEEc-CCeEEEEEEEcCcCcCCCCEEEeCHHHHhccCCCCCCEEEEEE-CC
Confidence 58999999999888742 233 367764 345788899886543 47999999999999999999999999 67
Q ss_pred CccceEEEEecCCc--chHHHHHhcHHHHHHHHhcccceecCCCEEEEEe---cCceEEEEEEcccCCCCCeEEccCCCE
Q 001162 91 VLKATLVTIEPLTE--DDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWL---HGRTIITFHVVSTFPKKPVVQLVPGTE 165 (1134)
Q Consensus 91 ~~~~~~v~veP~t~--dDwei~e~~a~~~e~~ll~Q~r~v~~~~~~~~~~---~~~~~~~~~v~~~~p~~~~~~l~~~te 165 (1134)
++.|+.|.+.|.+- ++-++-+.-..||...|+. |.|..|..|++-+ .++|.+.|+|+++.|+..+++++++|+
T Consensus 92 ~~~A~~V~l~P~~~~~~~~~~~~~~~~~l~~~l~~--rpv~~Gd~v~v~~~~~~g~~~~~f~Vv~t~P~~~~v~Vt~~T~ 169 (185)
T 1cz4_A 92 TEIAKKVTLAPIIRKDQRLKFGEGIEEYVQRALIR--RPMLEQDNISVPGLTLAGQTGLLFKVVKTLPSKVPVEIGEETK 169 (185)
T ss_dssp CCBCSEEEEEEECSTTCCSCCCSSHHHHHHHHHTT--CEECTTCEECCSSCCCSSCCCCEEEEEEESSSSSCEECCTTCE
T ss_pred CCCccEEEEecccccccccccccchHHHHHHHHCC--CcccCCCEEEEeeeccCCCeEEEEEEEEEcCCCceEEEcCCeE
Confidence 99999999999851 2223223336999999999 7899999999875 555689999999999766899999999
Q ss_pred EEEeccCC
Q 001162 166 VAVAPKRR 173 (1134)
Q Consensus 166 v~vapk~r 173 (1134)
|.+.+++-
T Consensus 170 I~i~~~p~ 177 (185)
T 1cz4_A 170 IEIREEPA 177 (185)
T ss_dssp EEECSCCS
T ss_pred EEECCccc
Confidence 99987554
No 189
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.38 E-value=2.5e-07 Score=83.54 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=66.6
Q ss_pred cccCCCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcccccCCCccccccccccchh
Q 001162 735 HVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRD 814 (1134)
Q Consensus 735 ~i~l~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~e 814 (1134)
+-+-.+||.++|.+||+.++.+..+. ++.++..||..|+||+|+||..+|+.|...++.+. ...++.+
T Consensus 5 ~~~~~~Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~-----------~~~I~~~ 72 (86)
T 2krk_A 5 HHHHSHPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------RVHVTQE 72 (86)
T ss_dssp SCCCCCCCHHHHHHHHHHHTTTSEEC-TTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT-----------CSEECHH
T ss_pred CCCCCCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc-----------CCCCCHH
Confidence 34567999999999999999876543 34458899999999999999999999999998762 2569999
Q ss_pred hhHhhhhccccc
Q 001162 815 DFSQAMHEFLPV 826 (1134)
Q Consensus 815 Df~~Al~~~~P~ 826 (1134)
||..|+....|.
T Consensus 73 df~~Al~~v~p~ 84 (86)
T 2krk_A 73 DFEMAVAKVMQK 84 (86)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHccC
Confidence 999999887663
No 190
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.36 E-value=8.6e-07 Score=102.39 Aligned_cols=164 Identities=18% Similarity=0.247 Sum_probs=94.7
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCC--cEEEEeCcccchh-------------cccccHHHHHHHHHHhhhcCCeEEEE
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSL--RFISVKGPELLNK-------------YIGASEQAVRDIFSKATAAAPCLLFF 943 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~--~~i~i~~~el~~~-------------~~G~se~~v~~lf~~A~~~~P~VLfi 943 (1134)
..+|++|++||||+++|+++....+. .|+.++|+.+-.. |.|.... -...|+.|.++ +|||
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~-~~g~~~~a~~g---tlfl 228 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTR-KKGKLELADQG---TLFL 228 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCC-EECHHHHTTTS---EEEE
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccc-cCChHhhcCCC---eEEe
Confidence 46999999999999999999988754 3999999875321 1222111 12457777665 9999
Q ss_pred cCcccccCCCCCCCCcchhhHHHhHhhhccccc--c-------cccEEEEEecCCCCc-------cchhhcCcCcccc-e
Q 001162 944 DEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V-------LTGVFVFAATSRPDL-------LDAALLRPGRLDR-L 1006 (1134)
Q Consensus 944 DEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~--~-------~~~v~vIatTn~p~~-------ld~allrpgRfd~-~ 1006 (1134)
|||+.| ...+...|+..|+.-. . .-.+-+|+|||+.-. +.+.|.. |+.. .
T Consensus 229 dei~~l-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~ 295 (368)
T 3dzd_A 229 DEVGEL-----------DQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQ 295 (368)
T ss_dssp ETGGGS-----------CHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEE
T ss_pred cChhhC-----------CHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeE
Confidence 999998 3456667777665211 1 114668888886311 1223333 3332 3
Q ss_pred eecCCCCH--HHHHHHHHHHHcc----CCCC-CcccHHHHHHhcc-CCc--HHHHHHHHHHHH
Q 001162 1007 LFCDFPSP--RERLDILKVISRK----LPLA-DDVDLEAIAHMTE-GFS--GADLQALLSDAQ 1059 (1134)
Q Consensus 1007 i~~~~p~~--~er~~Il~~~~~~----~~~~-~~vd~~~La~~t~-g~s--g~dl~~l~~~A~ 1059 (1134)
|.+|+... ++...+++.++++ .+.. ..++.+.+..... .+. -+++++++..|.
T Consensus 296 i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~ 358 (368)
T 3dzd_A 296 IYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAV 358 (368)
T ss_dssp EECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHH
T ss_pred EeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 55665544 5555555555432 2222 2344444444332 232 355555555443
No 191
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.36 E-value=5.9e-06 Score=93.83 Aligned_cols=188 Identities=19% Similarity=0.196 Sum_probs=109.3
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccc------
Q 001162 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL------ 915 (1134)
Q Consensus 842 ~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~------ 915 (1134)
.-..+.|-++..+.|.+.+.. + ..++++||+|+|||++++.+++..+ ++.+++....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHI 72 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCB
T ss_pred ChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCC
Confidence 334577888877777776542 1 4799999999999999999999886 6666654321
Q ss_pred ------h---hcc-----------------c-------cc-HHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcch
Q 001162 916 ------N---KYI-----------------G-------AS-EQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT 961 (1134)
Q Consensus 916 ------~---~~~-----------------G-------~s-e~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~ 961 (1134)
. ... | .. ...++.+.+.+....|.+|+|||++.+..... ...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~----~~~ 148 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS----RGG 148 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT----TTT
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc----cch
Confidence 0 000 0 01 11122222223323489999999999853100 001
Q ss_pred hhHHHhHhhhcccccccccEEEEEecCCCCccch---------hhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCC-
Q 001162 962 DRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA---------ALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLA- 1031 (1134)
Q Consensus 962 ~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~---------allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~- 1031 (1134)
..+...+...++. ..++.+|.|++....+.. .+ .||+...+.+++.+.++..++++..+...+..
T Consensus 149 ~~~~~~L~~~~~~---~~~~~~il~g~~~~~l~~~l~~~~~~~~l--~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~ 223 (350)
T 2qen_A 149 KELLALFAYAYDS---LPNLKIILTGSEVGLLHDFLKITDYESPL--YGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV 223 (350)
T ss_dssp HHHHHHHHHHHHH---CTTEEEEEEESSHHHHHHHHCTTCTTSTT--TTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC
T ss_pred hhHHHHHHHHHHh---cCCeEEEEECCcHHHHHHHHhhcCCCCcc--ccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 2233333222221 135555555544221111 12 24666788999999999999998876654432
Q ss_pred CcccHHHHHHhccCCcHHHHHHHHH
Q 001162 1032 DDVDLEAIAHMTEGFSGADLQALLS 1056 (1134)
Q Consensus 1032 ~~vd~~~La~~t~g~sg~dl~~l~~ 1056 (1134)
.+.....+...+.|+.. -++.++.
T Consensus 224 ~~~~~~~i~~~tgG~P~-~l~~~~~ 247 (350)
T 2qen_A 224 PENEIEEAVELLDGIPG-WLVVFGV 247 (350)
T ss_dssp CHHHHHHHHHHHTTCHH-HHHHHHH
T ss_pred CHHHHHHHHHHhCCCHH-HHHHHHH
Confidence 33346677788888764 3444443
No 192
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.34 E-value=4.3e-07 Score=80.48 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=62.6
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHh
Q 001162 739 PAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQ 818 (1134)
Q Consensus 739 ~~P~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~ 818 (1134)
|+|+.++|.+||+.++.+..+. ++..+..+|..|+||+|+||..+|+.|...++.+ ....++.+||..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~-~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~-----------~~~~i~~~d~~~ 68 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRE-----------RRVHVTQEDFEM 68 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT-----------TCSEECHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-----------CCCCCCHHHHHH
Confidence 6899999999999998875542 3446899999999999999999999999999876 235699999999
Q ss_pred hhhccc
Q 001162 819 AMHEFL 824 (1134)
Q Consensus 819 Al~~~~ 824 (1134)
|+..+.
T Consensus 69 Al~~v~ 74 (78)
T 3kw6_A 69 AVAKVM 74 (78)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987654
No 193
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.31 E-value=3.1e-07 Score=103.46 Aligned_cols=70 Identities=19% Similarity=0.277 Sum_probs=47.8
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc----CCcEEEEeCcccchhccccc-HHHHHHHHHHhhhcCCeEEEEcCcccc
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGPELLNKYIGAS-EQAVRDIFSKATAAAPCLLFFDEFDSI 949 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~----~~~~i~i~~~el~~~~~G~s-e~~v~~lf~~A~~~~P~VLfiDEid~l 949 (1134)
..+++|+||||||||++|.++|.++ |.+++.+++++++..+.+.. ...+..++.... .+.+|||||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 4689999999999999999999865 47888888888766543321 111222233322 3469999999765
No 194
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=98.31 E-value=4.6e-06 Score=87.69 Aligned_cols=161 Identities=18% Similarity=0.189 Sum_probs=127.7
Q ss_pred eEEEEeCCcccceeeCCHHHHHHHhcccccCCCCceEEEEEEeCCC-CeEEEEecCccCCCCceEecHHHHhhcCCCCCC
Q 001162 3 LEVRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSN-QRWVVAWSGATSSSSFIEVARQFAECISLADHT 81 (1134)
Q Consensus 3 ~~v~~~~~~~~~~v~lp~~l~~~l~~~~~~~~~~q~~~~e~~~~~~-~~~~~~w~g~~s~~~~iei~~~~a~~~gl~~~~ 81 (1134)
|.|.=...-.++.|+|++.....|.-. +-+ .|+|....+ ..+...|.+.....+.|-||...=+.+|+..|+
T Consensus 29 l~V~ea~~~Drgivrl~p~~m~~Lgl~------~GD-~V~I~Gkr~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD 101 (211)
T 3qwz_A 29 LIVDEAINEDNSVVSLSQPKMDELQLF------RGD-TVLLKGXKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGD 101 (211)
T ss_dssp EEEEECSCCCTTEEEECHHHHHHHTCC------BTC-EEEEECSTTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTC
T ss_pred eEEcccccCCCcEEEECHHHHHHcCCC------CCC-EEEEeCCCCCcEEEEEEeCCCCCCCEEEeCHHHHhhcCCCCCC
Confidence 444443334489999999999998842 223 578876543 477888987666668999999999999999999
Q ss_pred EEEEEEeeCCccceEEEEecCCcchHHHHHh--cHHHHHHHHhcccceecCCCEEEEEecCceEEEEEEcccCCCCCeEE
Q 001162 82 IVQVRVVSNVLKATLVTIEPLTEDDWEVLEL--NSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVVQ 159 (1134)
Q Consensus 82 ~v~~~~~~~~~~~~~v~veP~t~dDwei~e~--~a~~~e~~ll~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~ 159 (1134)
.|.|+.+.+++.|+.|.+.|.+ |+.+-+.- -..||...|+.--|.|..|..|++-. .+..+.|+|+++.|+ .++.
T Consensus 102 ~V~V~~~~~v~~A~~V~LaP~~-~~i~~i~~~~~~~~lk~~l~~~~rPV~~GD~i~v~~-~~~~v~f~Vv~t~P~-g~vi 178 (211)
T 3qwz_A 102 VISIQPCPDVKYGKRIHVLPID-DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRG-GMRAVEFXVVETDPS-PYCI 178 (211)
T ss_dssp EEEEEECTTCCBCSEEEEEEBG-GGCTTCCSCHHHHTTHHHHTTCCEEEETTCEEECCC-TTSCCEEEEEEEESS-SEEE
T ss_pred EEEEEECCCCCCceEEEEeccC-cchhccCchhHHHHHHHHHhhCCceeecCCEEEEcc-CCcEEEEEEEeecCC-CCEE
Confidence 9999999899999999999953 34442222 26889999998889999999998875 445689999999996 5999
Q ss_pred ccCCCEEEEeccCC
Q 001162 160 LVPGTEVAVAPKRR 173 (1134)
Q Consensus 160 l~~~tev~vapk~r 173 (1134)
++++|+|.+..++=
T Consensus 179 V~~~T~I~~~~~pv 192 (211)
T 3qwz_A 179 VAPDTVIHCEGEPI 192 (211)
T ss_dssp ECTTCEEECCSCCB
T ss_pred ECCCcEEEEcCccc
Confidence 99999999976543
No 195
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.28 E-value=1.4e-06 Score=97.40 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=46.8
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec--ccccccchhhHHHHHHHHHHHHhhcCCeEEEEcc
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC--SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDN 663 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~--s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDE 663 (1134)
|++++..++|+||||||||+|+..+|...+ ..+.+++. .+.........+..+..+++...... +|+||+
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G------~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDs 190 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALG------GKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDS 190 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHH------TTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEEC
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCC------CCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEec
Confidence 345556689999999999999999998732 11223333 22111111334455555555554433 999999
Q ss_pred cchhcc
Q 001162 664 LDSIIS 669 (1134)
Q Consensus 664 iD~L~~ 669 (1134)
++.+..
T Consensus 191 I~aL~~ 196 (331)
T 2vhj_A 191 LKNVIG 196 (331)
T ss_dssp CTTTC-
T ss_pred cccccc
Confidence 999864
No 196
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.25 E-value=7.8e-06 Score=93.35 Aligned_cols=165 Identities=12% Similarity=0.063 Sum_probs=107.6
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccch-hcc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDS-IIS 669 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~-L~~ 669 (1134)
..+|||||+|.||++.++.+++.+.........++.++. ...++..+..+-.........|++|||+|. +..
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~ 91 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-------NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNA 91 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-------TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCT
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-------CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCCh
Confidence 469999999999999999999987532211122333331 123333332222222224467999999988 631
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCC------CCCChhhccCCCccccccCCCCCH
Q 001162 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSL------EKIPQSLTSSGRFDFHVQLPAPAA 743 (1134)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~------~~Ld~aL~~~gRF~~~i~l~~P~~ 743 (1134)
...+.|...++.... .+++|.+++.. ..+.+.+.+ |. ..+.+.+++.
T Consensus 92 ---------------~~~~aLl~~le~p~~---------~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~ 144 (343)
T 1jr3_D 92 ---------------AINEQLLTLTGLLHD---------DLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQ 144 (343)
T ss_dssp ---------------THHHHHHHHHTTCBT---------TEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCT
T ss_pred ---------------HHHHHHHHHHhcCCC---------CeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCH
Confidence 123445555554332 24444444432 345667776 54 3788999999
Q ss_pred HHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHH
Q 001162 744 SERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1134)
Q Consensus 744 eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~ 790 (1134)
++....++..+...++.++++.+..++..++| +.+++.+.++..+.
T Consensus 145 ~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l 190 (343)
T 1jr3_D 145 AQLPRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSL 190 (343)
T ss_dssp THHHHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHH
Confidence 99999999999989999999999999998877 67777777776654
No 197
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.24 E-value=2.5e-06 Score=89.50 Aligned_cols=73 Identities=22% Similarity=0.312 Sum_probs=45.6
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHH-HHHHHHHHHHhhcCCeEEEEcccchh
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR-QALSNFISEALDHAPSIVIFDNLDSI 667 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~-~~l~~~f~~a~~~~PsIL~IDEiD~L 667 (1134)
+.+++|+||+|||||+++++++..+.... ..+.+++|..+......... ..+...+.... .+.+|+|||++..
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~ 127 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRN---VSSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAE 127 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTT---CCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 36799999999999999999999885432 45667777654321111000 00112222222 3469999999765
No 198
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.20 E-value=1.4e-06 Score=91.68 Aligned_cols=131 Identities=20% Similarity=0.231 Sum_probs=74.9
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhcc----CCceeeEEEEEecccccccch----------hh-----HHHHHHHHHHHH
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEH----HKDLVAHIVFVCCSRLSLEKG----------PI-----IRQALSNFISEA 651 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~----~~~~~~~~~~v~~s~l~~~~~----------~~-----~~~~l~~~f~~a 651 (1134)
.-.|++|+||||||++|...+..... ..+. ..+.+.++.++..... .. ....+.+++..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~-r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~- 83 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGI-RRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK- 83 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSC-CCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCc-eEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-
Confidence 35899999999999999887655410 1110 2333455554432111 00 01122222211
Q ss_pred hhcCCeEEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCC
Q 001162 652 LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGR 731 (1134)
Q Consensus 652 ~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gR 731 (1134)
....++||+|||++.+.+.+.+. .... .++ ..+..... ..+.+|.++++++.++..++. |
T Consensus 84 ~~~~~~vliIDEAq~l~~~~~~~--~e~~----rll----~~l~~~r~--------~~~~iil~tq~~~~l~~~lr~--r 143 (199)
T 2r2a_A 84 PENIGSIVIVDEAQDVWPARSAG--SKIP----ENV----QWLNTHRH--------QGIDIFVLTQGPKLLDQNLRT--L 143 (199)
T ss_dssp GGGTTCEEEETTGGGTSBCCCTT--CCCC----HHH----HGGGGTTT--------TTCEEEEEESCGGGBCHHHHT--T
T ss_pred cccCceEEEEEChhhhccCcccc--chhH----HHH----HHHHhcCc--------CCeEEEEECCCHHHHhHHHHH--H
Confidence 23457899999999997543211 1111 111 22221111 136778888889999999998 9
Q ss_pred ccccccCCCCCH
Q 001162 732 FDFHVQLPAPAA 743 (1134)
Q Consensus 732 F~~~i~l~~P~~ 743 (1134)
+..++++++|..
T Consensus 144 i~~~~~l~~~~~ 155 (199)
T 2r2a_A 144 VRKHYHIASNKM 155 (199)
T ss_dssp EEEEEEEEECSS
T ss_pred hheEEEEcCccc
Confidence 999998887643
No 199
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.16 E-value=2.4e-06 Score=89.14 Aligned_cols=29 Identities=17% Similarity=0.422 Sum_probs=25.8
Q ss_pred CCCCceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 587 ~~~p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.|..+++|||||||||||++|.++|+.+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45557799999999999999999999985
No 200
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.08 E-value=5.7e-06 Score=96.38 Aligned_cols=192 Identities=17% Similarity=0.095 Sum_probs=104.1
Q ss_pred eEEEEcCCCccHHHHHHHH-HHHhccCCceeeEEEEEec--c---cccccchhh--HHHHHHHHHHHHhhcCCeEEEEcc
Q 001162 592 HILIHGPPGSGKTSLAKAV-AKSLEHHKDLVAHIVFVCC--S---RLSLEKGPI--IRQALSNFISEALDHAPSIVIFDN 663 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaral-A~~l~~~~~~~~~~~~v~~--s---~l~~~~~~~--~~~~l~~~f~~a~~~~PsIL~IDE 663 (1134)
|+||.|+||| ||++++++ ++.+.. ..++.. + .+.+...+. .. .-...+..| ..+++|+||
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR-------~~ft~g~~ss~~gLt~s~r~~tG~~-~~~G~l~LA---dgGvl~lDE 308 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPR-------GVYVDLRRTELTDLTAVLKEDRGWA-LRAGAAVLA---DGGILAVDH 308 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSS-------EEEEEGGGCCHHHHSEEEEESSSEE-EEECHHHHT---TTSEEEEEC
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCC-------eEEecCCCCCccCceEEEEcCCCcc-cCCCeeEEc---CCCeeehHh
Confidence 7999999999 99999999 665421 111111 0 011000000 00 000111222 236999999
Q ss_pred cchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCC-----------CCChhhccCCCc
Q 001162 664 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE-----------KIPQSLTSSGRF 732 (1134)
Q Consensus 664 iD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~-----------~Ld~aL~~~gRF 732 (1134)
++.+-+ .....|.+.|+.-.-.-.+..-..++.||||+|+.+ .|++++++ ||
T Consensus 309 In~~~~---------------~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RF 371 (506)
T 3f8t_A 309 LEGAPE---------------PHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HF 371 (506)
T ss_dssp CTTCCH---------------HHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TC
T ss_pred hhhCCH---------------HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--he
Confidence 998731 445566666664221000011223689999999865 68889999 99
Q ss_pred cccc-cCCCCCHHHH---------HHHHHHH---hh--hcccCCCHHHHHHHhh-----------------hcCCCChhh
Q 001162 733 DFHV-QLPAPAASER---------KAILEHE---IQ--RRSLECSDEILLDVAS-----------------KCDGYDAYD 780 (1134)
Q Consensus 733 ~~~i-~l~~P~~eeR---------~~IL~~~---l~--~~~l~~~~~~l~~la~-----------------~teG~s~~D 780 (1134)
+..+ .+..|+.+.- .+.++.+ ++ .....+++++..++.. ..-|.+++.
T Consensus 372 DLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~ 451 (506)
T 3f8t_A 372 DLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQ 451 (506)
T ss_dssp SEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHH
T ss_pred eeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHH
Confidence 7544 4455554321 1222222 22 1134466665333221 134678899
Q ss_pred HHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhcc
Q 001162 781 LEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1134)
Q Consensus 781 L~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1134)
+..+++-|-..|..+ ....++.+|...|+.-+
T Consensus 452 leaLiRlA~A~A~L~-----------gR~~V~~eDV~~Ai~L~ 483 (506)
T 3f8t_A 452 LESVERLAKAHARMR-----------LSDDVEPEDVDIAAELV 483 (506)
T ss_dssp HHHHHHHHHHHHHHT-----------TCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-----------CcCCCCHHHHHHHHHHH
Confidence 999998777666554 23568888988876543
No 201
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.07 E-value=3.3e-06 Score=75.69 Aligned_cols=75 Identities=15% Similarity=0.203 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhh
Q 001162 742 AASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMH 821 (1134)
Q Consensus 742 ~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~ 821 (1134)
|.++|.+||+.++.+..+. ++..+..+|..|+||+|+||..+|+.|...++.+. ...++.+||..|+.
T Consensus 2 d~~~R~~Il~~~l~~~~~~-~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------~~~i~~~df~~Al~ 69 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLS-EEVDLEDYVARPDKISGADINSICQESGMLAVREN-----------RYIVLAKDFEKAYK 69 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBC-TTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC-----------CSSBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------cCCcCHHHHHHHHH
Confidence 6789999999998765543 34458899999999999999999999999887662 25699999999999
Q ss_pred cccccee
Q 001162 822 EFLPVAM 828 (1134)
Q Consensus 822 ~~~P~~l 828 (1134)
.+.|+..
T Consensus 70 ~~~ps~~ 76 (83)
T 3aji_B 70 TVIKKDE 76 (83)
T ss_dssp HHCC---
T ss_pred HHccCch
Confidence 9888643
No 202
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.06 E-value=2.8e-06 Score=77.10 Aligned_cols=76 Identities=13% Similarity=0.132 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhh
Q 001162 742 AASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMH 821 (1134)
Q Consensus 742 ~~eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~ 821 (1134)
|.++|.+||+.++.+..+. ++.++..||..|+||+|+||..+|+.|...++.+. ...++.+||..|+.
T Consensus 2 d~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~-----------~~~i~~~df~~Al~ 69 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR-----------RKVATEKDFLKAVD 69 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBC-SCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS-----------CSSBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCC-CccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc-----------cccCCHHHHHHHHH
Confidence 5689999999988775543 34468999999999999999999999999998762 24589999999999
Q ss_pred ccccceec
Q 001162 822 EFLPVAMR 829 (1134)
Q Consensus 822 ~~~P~~lr 829 (1134)
...+...+
T Consensus 70 ~v~~~~~~ 77 (88)
T 3vlf_B 70 KVISGYKK 77 (88)
T ss_dssp HHTC----
T ss_pred HHhcCccc
Confidence 88776443
No 203
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.05 E-value=4.6e-05 Score=86.93 Aligned_cols=143 Identities=16% Similarity=0.090 Sum_probs=91.2
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc---CC-cEEEEeCcccchhcccccHHHHHHHHHHhh----hcCCeEEEEcCccc-
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SL-RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDS- 948 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~---~~-~~i~i~~~el~~~~~G~se~~v~~lf~~A~----~~~P~VLfiDEid~- 948 (1134)
...+|||||+|+||++.++.+++.+ +. ++..+.. -| +..++++++.+. .+...|++|||+|.
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~k 88 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSI-------DP--NTDWNAIFSLCQAMSLFASRQTLLLLLPENG 88 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEEC-------CT--TCCHHHHHHHHHHHHHCCSCEEEEEECCSSC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEe-------cC--CCCHHHHHHHhcCcCCccCCeEEEEECCCCC
Confidence 4579999999999999999998865 32 2222211 11 123455665553 24467999999998
Q ss_pred ccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCC-----CCccchhhcCcCcccceeecCCCCHHHHHHHHHH
Q 001162 949 IAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSR-----PDLLDAALLRPGRLDRLLFCDFPSPRERLDILKV 1023 (1134)
Q Consensus 949 l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~-----p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~ 1023 (1134)
+. ....+.|+..++... .+.++|+++++. ...+-+++.+ |. ..+.|.+++..+....++.
T Consensus 89 l~-----------~~~~~aLl~~le~p~-~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 89 PN-----------AAINEQLLTLTGLLH-DDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp CC-----------TTHHHHHHHHHTTCB-TTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHHHHH
T ss_pred CC-----------hHHHHHHHHHHhcCC-CCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHHHHH
Confidence 62 346677888776432 233444444432 2346778887 44 5788999999999999999
Q ss_pred HHccCCCC-CcccHHHHHHhcc
Q 001162 1024 ISRKLPLA-DDVDLEAIAHMTE 1044 (1134)
Q Consensus 1024 ~~~~~~~~-~~vd~~~La~~t~ 1044 (1134)
.+++.++. ++..+..|+..+.
T Consensus 154 ~~~~~g~~i~~~a~~~l~~~~~ 175 (343)
T 1jr3_D 154 RAKQLNLELDDAANQVLCYCYE 175 (343)
T ss_dssp HHHHTTCEECHHHHHHHHHSST
T ss_pred HHHHcCCCCCHHHHHHHHHHhc
Confidence 88877653 2222444555443
No 204
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.96 E-value=8.2e-06 Score=91.84 Aligned_cols=73 Identities=16% Similarity=0.291 Sum_probs=43.9
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhc-cCCceeeEEEEEecccccccchhhH-HHHHHHHHHHHhhcCCeEEEEcccchh
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLE-HHKDLVAHIVFVCCSRLSLEKGPII-RQALSNFISEALDHAPSIVIFDNLDSI 667 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~-~~~~~~~~~~~v~~s~l~~~~~~~~-~~~l~~~f~~a~~~~PsIL~IDEiD~L 667 (1134)
+.+++|+||||||||+|++++|..+. ... ..+.++++..+........ ...+...+... ..+.+|||||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g---~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKG---VSTTLLHFPSFAIDVKNAISNGSVKEEIDAV--KNVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSC---CCEEEEEHHHHHHHHHCCCC----CCTTHHH--HTSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcC---CcEEEEEHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 46799999999999999999999876 433 4466677654422110000 00011112211 24569999999754
No 205
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.94 E-value=4e-05 Score=79.05 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=23.6
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCcE
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLRF 906 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~~ 906 (1134)
.+.|.||+|+||||+++.++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999886544
No 206
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.93 E-value=0.00039 Score=84.02 Aligned_cols=78 Identities=23% Similarity=0.210 Sum_probs=51.9
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccc----h----------------------hccc--cc
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL----N----------------------KYIG--AS 922 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~----~----------------------~~~G--~s 922 (1134)
++.+..-+++.||+|+|||+|++.++... |.+.+.+...+-. . .+.. ..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 45566678999999999999999998754 4455555432210 0 0000 12
Q ss_pred HHHHHHHHHHhhhcCCeEEEEcCcccccC
Q 001162 923 EQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1134)
Q Consensus 923 e~~v~~lf~~A~~~~P~VLfiDEid~l~~ 951 (1134)
.+..+.++..+....|.+|+||-+..+..
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~ 385 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALAR 385 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTS
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHh
Confidence 34566677777888999999996666643
No 207
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.88 E-value=9.1e-06 Score=84.86 Aligned_cols=30 Identities=17% Similarity=0.198 Sum_probs=26.2
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHcCCcEE
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFI 907 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~~~~~i 907 (1134)
..++|||||||||||++|.++|+.++..++
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 457999999999999999999999876543
No 208
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=97.87 E-value=0.00012 Score=75.80 Aligned_cols=154 Identities=10% Similarity=0.097 Sum_probs=128.2
Q ss_pred ceeeCCHHHHHHHhcccccCCCCceEEEEEEeCC-CCeEEEEecCccCCCCceEecHHHHhhcCCCCCCEEEEEEeeCCc
Q 001162 14 CFVSLPLKLIETLESTRSAHLLPQVLSLELRSRS-NQRWVVAWSGATSSSSFIEVARQFAECISLADHTIVQVRVVSNVL 92 (1134)
Q Consensus 14 ~~v~lp~~l~~~l~~~~~~~~~~q~~~~e~~~~~-~~~~~~~w~g~~s~~~~iei~~~~a~~~gl~~~~~v~~~~~~~~~ 92 (1134)
-=|-||++..+.|.+.+.. --...||+... ++..|+|=-..++..+.|=+.+-+.+.|||.+|+.|.|+- .+.|
T Consensus 46 dKIiLP~SaL~~L~~~~i~----~Pm~F~l~n~~~~~~th~GVlEF~A~EG~v~lP~wmm~~L~l~~gd~V~i~~-~~LP 120 (208)
T 1zc1_A 46 GKIFLPPSALSKLSMLNIR----YPMLFKLTANETGRVTHGGVLEFIAEEGRVYLPQWMMETLGIQPGSLLQISS-TDVP 120 (208)
T ss_dssp SEEEECHHHHHHHHHTTCC----SSCCEEEECTTTCCEEEEEEEEECCSSCEEEECHHHHHHHTCCTTCEEEEEE-EECC
T ss_pred CeEECCHHHHHHHHHCCCC----cCEEEEEEeCCCCCEEEEEEEEEEcCCCeEEcCHHHHHhcCCCCCCEEEEEE-eEcC
Confidence 3477999999999986543 23556776543 3578999777777778999999999999999999999995 4799
Q ss_pred cceEEEEecCCcchHHHHHhcHHHHHHHHhcccceecCCCEEEEEecCceEEEEEEcccCCCC---CeEEccCCCEEEEe
Q 001162 93 KATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKK---PVVQLVPGTEVAVA 169 (1134)
Q Consensus 93 ~~~~v~veP~t~dDwei~e~~a~~~e~~ll~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~---~~~~l~~~tev~va 169 (1134)
.++.|.+.|.+.|=|+| +-+-..||..|- +--+++.|.++.++- ++..-.|.|..+.|+. .+..+..|-||=++
T Consensus 121 kgt~vklqP~~~~Fldi-~npKavLE~~LR-nfstLT~Gd~I~i~~-~~~~y~l~V~e~kP~~~~~aV~IidTDleVDf~ 197 (208)
T 1zc1_A 121 LGQFVKLEPQSVDFLDI-SDPKAVLENVLR-NFSTLTVDDVIEISY-NGKTFKIKILEVKPESSSKSICVIETDLVTDFA 197 (208)
T ss_dssp CCSEEEEECCHHHHHTS-SCHHHHHHHHHH-HCSCEESSSEEEEEE-TTEEEEEEEEEEECSSTTCEECCSSSCSEEEEC
T ss_pred CCCEEEEeECccccccc-cCHHHHHHHHhh-cCccccCCCEEEEEe-CCEEEEEEEEEEcCCCCCceEEEEeCceEEEec
Confidence 99999999999887765 666779999987 599999999999997 5677899999999997 78889999999988
Q ss_pred ccCCCC
Q 001162 170 PKRRKN 175 (1134)
Q Consensus 170 pk~r~~ 175 (1134)
|-..-.
T Consensus 198 ~p~~y~ 203 (208)
T 1zc1_A 198 PPVGYV 203 (208)
T ss_dssp CCCCCC
T ss_pred CCCCCc
Confidence 865443
No 209
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.75 E-value=2.6e-05 Score=85.12 Aligned_cols=28 Identities=32% Similarity=0.564 Sum_probs=24.4
Q ss_pred CCCceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 588 PLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 588 ~~p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
++.++++||||||||||++++++|+.+.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3356799999999999999999999754
No 210
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.67 E-value=3.9e-05 Score=88.42 Aligned_cols=119 Identities=19% Similarity=0.242 Sum_probs=71.1
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchhhHHHHHHHHHHHHhhcCCeEEEEcccc
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLD 665 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD 665 (1134)
+++++..++|+||+|+||||+++++++.++ ..++.++... . .... .+. ...+..++++||++
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~------g~~~~~~~~~---~---~~~~----~lg--~~~q~~~~l~dd~~ 226 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCG------GKALNVNLPL---D---RLNF----ELG--VAIDQFLVVFEDVK 226 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC------CEEECCSSCT---T---THHH----HHG--GGTTCSCEEETTCC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcC------CcEEEEeccc---h---hHHH----HHH--HhcchhHHHHHHHH
Confidence 567778899999999999999999999764 2222222111 1 1111 111 22344578999999
Q ss_pred hhcc-CCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCC
Q 001162 666 SIIS-SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPA 740 (1134)
Q Consensus 666 ~L~~-~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~ 740 (1134)
.+.. .+.-..+ ... .....+.+.+++ .+.+++++|+++.+ +++.+++|++..+....
T Consensus 227 ~~~~~~r~l~~~----~~~-~~~~~l~~~ldG------------~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 227 GTGGESRDLPSG----QGI-NNLDNLRDYLDG------------SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp CSTTTTTTCCCC----SHH-HHHHTTHHHHHC------------SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHHHHHhhcccc----Ccc-hHHHHHHHHhcC------------CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 8863 1111110 110 011223333332 25678889999999 78888889987766644
No 211
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.64 E-value=8.3e-05 Score=81.08 Aligned_cols=27 Identities=37% Similarity=0.661 Sum_probs=24.3
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHcCC
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAACSL 904 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~~~ 904 (1134)
..+++||||||||||++|.++|+.++.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 468999999999999999999998654
No 212
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.54 E-value=0.00027 Score=72.72 Aligned_cols=24 Identities=46% Similarity=0.812 Sum_probs=22.0
Q ss_pred eEEEEcCCCccHHHHHHHHHHHhc
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.+.|.||+|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999875
No 213
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.50 E-value=0.00025 Score=75.30 Aligned_cols=38 Identities=26% Similarity=0.148 Sum_probs=28.7
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeC
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKG 911 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~ 911 (1134)
++.++.-++|+||+|+|||++++.++... +..++.++.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 34555678999999999999999999654 456655554
No 214
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.49 E-value=3.1e-05 Score=69.17 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhhcccCCCHHHHHHHhhhcCCCChhhHHHHHHHHHHHHhcccccCCCccccccccccchhhhHhhhhcc
Q 001162 744 SERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1134)
Q Consensus 744 eeR~~IL~~~l~~~~l~~~~~~l~~la~~teG~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1134)
++|.+||+.++.+..+. ++.++..+|..|+||+|+||..+|+.|...++.+. ...++.+||..|+...
T Consensus 1 ~~R~~Il~~~l~~~~~~-~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~-----------~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN-----------RYVILQSDLEEAYATQ 68 (82)
T ss_dssp -------------CEEC-TTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT-----------CSEECHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------cCCcCHHHHHHHHHHH
Confidence 47899999888765442 23358899999999999999999999999998762 2469999999999887
Q ss_pred c
Q 001162 824 L 824 (1134)
Q Consensus 824 ~ 824 (1134)
.
T Consensus 69 ~ 69 (82)
T 2dzn_B 69 V 69 (82)
T ss_dssp C
T ss_pred H
Confidence 4
No 215
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.45 E-value=0.00032 Score=80.09 Aligned_cols=113 Identities=19% Similarity=0.248 Sum_probs=69.7
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhc----cc-----------c-cHHHHHHHHHHhh
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY----IG-----------A-SEQAVRDIFSKAT 934 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~----~G-----------~-se~~v~~lf~~A~ 934 (1134)
|+.+..-++++||||+|||+|+..+|..+ +.+++.++..+..... +| . .++.+..+-...+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45556678999999999999999998764 6678888876532210 01 1 1222222222334
Q ss_pred hcCCeEEEEcCcccccCCC------CCCCCcchhhHHHhHhhhcccccccccEEEEEe
Q 001162 935 AAAPCLLFFDEFDSIAPKR------GHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAA 986 (1134)
Q Consensus 935 ~~~P~VLfiDEid~l~~~r------~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIat 986 (1134)
...|.+++||.+..+.+.. +..+.....+.+.+++..|..+....++.||.+
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 5778999999999988621 111112234667777777766555555555543
No 216
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.44 E-value=0.00052 Score=72.82 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 587 ~~~p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
++++..++|+||+|+|||+|++.++..+.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45556689999999999999999997653
No 217
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.43 E-value=0.00022 Score=76.43 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=63.5
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHH--c-------CCcEEEEeCcccch--------hcccc---------------
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAA--C-------SLRFISVKGPELLN--------KYIGA--------------- 921 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~--~-------~~~~i~i~~~el~~--------~~~G~--------------- 921 (1134)
++.+..-++|+||||+|||++++.+|.. . +...+.++..+... ...|.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4555667899999999999999999984 3 45677777655210 00111
Q ss_pred cHHH----HHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchh--hHHHhHhhhcccccccccEEEEEecCCCC
Q 001162 922 SEQA----VRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD--RVVNQFLTELDGVEVLTGVFVFAATSRPD 991 (1134)
Q Consensus 922 se~~----v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~--rv~~~lL~~ld~~~~~~~v~vIatTn~p~ 991 (1134)
+... +..+.+.+....|.+|+|||+..+....-.+...... +.+..++..|..+....++.||.++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 175 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence 1111 2223344455679999999999886532111011121 12444444444333333555555665433
No 218
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.37 E-value=0.00087 Score=70.58 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=29.9
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~ 631 (1134)
|+++..-++|+||||+|||++++.++...+ ..+.+++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~------~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSG------KKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHC------SEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcC------CcEEEEECCC
Confidence 456666689999999999999999998211 4566666543
No 219
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.37 E-value=0.00041 Score=79.68 Aligned_cols=114 Identities=18% Similarity=0.274 Sum_probs=68.4
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhc----cc-----------ccHHHHHHHHH-Hhh
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY----IG-----------ASEQAVRDIFS-KAT 934 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~----~G-----------~se~~v~~lf~-~A~ 934 (1134)
|+++..-++++||||+|||++|..+|..+ +.+++.++...-.... .| .+...+..+++ ..+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 45566679999999999999998888654 6677777765432211 11 11222333333 234
Q ss_pred hcCCeEEEEcCcccccCCCCCCC------CcchhhHHHhHhhhcccccccccEEEEEec
Q 001162 935 AAAPCLLFFDEFDSIAPKRGHDN------TGVTDRVVNQFLTELDGVEVLTGVFVFAAT 987 (1134)
Q Consensus 935 ~~~P~VLfiDEid~l~~~r~~~~------~~~~~rv~~~lL~~ld~~~~~~~v~vIatT 987 (1134)
...+++|+||.+..+.+....+. .+...+.+.+++..|..+....++.||++.
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 56789999999999986322110 012235566677666554444555555543
No 220
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.35 E-value=0.00088 Score=71.70 Aligned_cols=83 Identities=11% Similarity=0.065 Sum_probs=50.6
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHHhccCC---ceeeEEEEEecccccc------------c---------------
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCCSRLSL------------E--------------- 635 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~---~~~~~~~~v~~s~l~~------------~--------------- 635 (1134)
|+++..-++|+||||+|||++++.++....... .....+++++...... .
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 355556699999999999999999998632211 0114566776654100 0
Q ss_pred chhhHHHHHHHHHHHHhhcCCeEEEEcccchhc
Q 001162 636 KGPIIRQALSNFISEALDHAPSIVIFDNLDSII 668 (1134)
Q Consensus 636 ~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~ 668 (1134)
........+..+......+.|.+|+||++..+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~ 132 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALY 132 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGG
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHH
Confidence 011111222333344444679999999998876
No 221
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.34 E-value=0.00024 Score=81.21 Aligned_cols=78 Identities=22% Similarity=0.261 Sum_probs=51.5
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchh----cccc-----------c-HHHHHHHHHHhh
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK----YIGA-----------S-EQAVRDIFSKAT 934 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~----~~G~-----------s-e~~v~~lf~~A~ 934 (1134)
|+.+..-++++||||+|||++|..++..+ +.+++.++...-... ..|. + ++.+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45566679999999999999999888654 567777776543221 1121 1 222222222334
Q ss_pred hcCCeEEEEcCcccccC
Q 001162 935 AAAPCLLFFDEFDSIAP 951 (1134)
Q Consensus 935 ~~~P~VLfiDEid~l~~ 951 (1134)
...|.+|+||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56799999999999975
No 222
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.31 E-value=0.00043 Score=72.97 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=32.9
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcc
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPE 913 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~e 913 (1134)
++.++.-++|+||||+|||+++..+|...+.+.+.++..+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4556667899999999999999999986677888887654
No 223
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.19 E-value=0.002 Score=73.46 Aligned_cols=81 Identities=17% Similarity=0.160 Sum_probs=51.1
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccc----------------cchhhHHHHHHHHHH
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL----------------EKGPIIRQALSNFIS 649 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~----------------~~~~~~~~~l~~~f~ 649 (1134)
|+++..-++|+||||+|||+|+..++..+.... ..+.+++...... .........+..+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~g---g~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMG---GVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 455566699999999999999999998865332 3356666654211 001122232322222
Q ss_pred HHhhcCCeEEEEcccchhcc
Q 001162 650 EALDHAPSIVIFDNLDSIIS 669 (1134)
Q Consensus 650 ~a~~~~PsIL~IDEiD~L~~ 669 (1134)
......+.+++||.+..+++
T Consensus 134 l~~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHTSCCSEEEEECTTTCCC
T ss_pred HhhhcCCCeEEehHhhhhcC
Confidence 23346789999999988874
No 224
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.16 E-value=0.00073 Score=77.19 Aligned_cols=80 Identities=23% Similarity=0.197 Sum_probs=50.1
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccccc--------c--------hhhHHHHHHHHHH
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE--------K--------GPIIRQALSNFIS 649 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~--------~--------~~~~~~~l~~~f~ 649 (1134)
|+++..-++|+||||+|||+|+..++..+.... ..+.+++....... . .....+.+..+..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g---~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAG---GIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 455666699999999999999999987764332 34556665432110 0 0112222322222
Q ss_pred HHhhcCCeEEEEcccchhc
Q 001162 650 EALDHAPSIVIFDNLDSII 668 (1134)
Q Consensus 650 ~a~~~~PsIL~IDEiD~L~ 668 (1134)
.+....|.+|+||++..+.
T Consensus 134 l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp HHTTTCCSEEEEECGGGCC
T ss_pred HHhcCCCCEEEEcChHhhc
Confidence 3334679999999999887
No 225
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.14 E-value=0.00087 Score=76.66 Aligned_cols=114 Identities=21% Similarity=0.333 Sum_probs=67.5
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchh----ccc-----------ccHHHHHHHHHH-hh
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK----YIG-----------ASEQAVRDIFSK-AT 934 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~----~~G-----------~se~~v~~lf~~-A~ 934 (1134)
|+.+..-++++|+||+|||++|..+|..+ +.+++.++...-... ..| .+...+.++++. ++
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 45566679999999999999999888754 667888877432211 011 122333444433 34
Q ss_pred hcCCeEEEEcCcccccCCCC---C--CC-CcchhhHHHhHhhhcccccccccEEEEEec
Q 001162 935 AAAPCLLFFDEFDSIAPKRG---H--DN-TGVTDRVVNQFLTELDGVEVLTGVFVFAAT 987 (1134)
Q Consensus 935 ~~~P~VLfiDEid~l~~~r~---~--~~-~~~~~rv~~~lL~~ld~~~~~~~v~vIatT 987 (1134)
...+.+|+||.+..+.+... . +. .+...+.+.+++..|..+....++.||.+.
T Consensus 139 ~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~n 197 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 197 (356)
T ss_dssp HTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred ccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 56789999999999975311 0 00 011224556666666544444455555443
No 226
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.10 E-value=0.0019 Score=74.07 Aligned_cols=81 Identities=21% Similarity=0.185 Sum_probs=50.9
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccc----------------hhhHHHHHHHHHH
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK----------------GPIIRQALSNFIS 649 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~----------------~~~~~~~l~~~f~ 649 (1134)
|+++..-++|+|+||+|||+++..++..+.... ..+.+++........ .......+..+..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g---~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAG---GTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCC---CeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 456666799999999999999999988764322 346666654321110 0112222222222
Q ss_pred HHhhcCCeEEEEcccchhcc
Q 001162 650 EALDHAPSIVIFDNLDSIIS 669 (1134)
Q Consensus 650 ~a~~~~PsIL~IDEiD~L~~ 669 (1134)
......+.+|+||.+..+.+
T Consensus 147 l~~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp HHTTTCCSEEEEECTTTCCC
T ss_pred HHhcCCCCEEEEeChHHhcc
Confidence 23346789999999999874
No 227
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.09 E-value=0.00048 Score=77.87 Aligned_cols=114 Identities=16% Similarity=0.218 Sum_probs=67.3
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHc---------CCcEEEEeCcccch--------hcccc---------------
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---------SLRFISVKGPELLN--------KYIGA--------------- 921 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~---------~~~~i~i~~~el~~--------~~~G~--------------- 921 (1134)
|+.+..-++++||||+|||++|..+|..+ +.+.+.++...-+. .-.|.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 45566679999999999999999999865 56778887665210 00111
Q ss_pred -cH---HHHHHHHHHhhh-cCCeEEEEcCcccccCCCCCCCCcchh--hHHHhHhhhcccccccccEEEEEec
Q 001162 922 -SE---QAVRDIFSKATA-AAPCLLFFDEFDSIAPKRGHDNTGVTD--RVVNQFLTELDGVEVLTGVFVFAAT 987 (1134)
Q Consensus 922 -se---~~v~~lf~~A~~-~~P~VLfiDEid~l~~~r~~~~~~~~~--rv~~~lL~~ld~~~~~~~v~vIatT 987 (1134)
.+ ..+..+....+. ..+.+|+||.+..+....-.+.....+ ..+.+++..|..+....++.||.+.
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~n 255 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITN 255 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEc
Confidence 11 122233334444 678999999999986421111111122 2456666666555444455555543
No 228
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.07 E-value=0.0051 Score=75.22 Aligned_cols=178 Identities=15% Similarity=0.194 Sum_probs=93.1
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHh---ccCCceeeEEEEEec
Q 001162 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSL---EHHKDLVAHIVFVCC 629 (1134)
Q Consensus 553 ~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l---~~~~~~~~~~~~v~~ 629 (1134)
...++|++..++.+.+.+... ....+-++|+|++|+|||+||+.+++.. ..... ..+..+++
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~-------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~--~~v~wv~~ 187 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL-------------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFP--GGVHWVSV 187 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS-------------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCT--TCEEEEEE
T ss_pred CCeecccHHHHHHHHHHHhcc-------------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCC--CceEEEEC
Confidence 446788998888887755221 1123569999999999999999997532 11110 11333333
Q ss_pred ccccc----------------------cchhhHHHHHHHHHHHHhh-cCCeEEEEcccchhccCCCCCCCCCCchhHHHH
Q 001162 630 SRLSL----------------------EKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIAL 686 (1134)
Q Consensus 630 s~l~~----------------------~~~~~~~~~l~~~f~~a~~-~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l 686 (1134)
+.... ............+...... ..|.+|+|||++... .
T Consensus 188 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~----------------~- 250 (591)
T 1z6t_A 188 GKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW----------------V- 250 (591)
T ss_dssp ESCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH----------------H-
T ss_pred CCCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH----------------H-
Confidence 22100 0001111111111111111 268899999996421 1
Q ss_pred HHHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccc-cCCCCCHHHHHHHHHHHhhhcccCCCHHH
Q 001162 687 TKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHV-QLPAPAASERKAILEHEIQRRSLECSDEI 765 (1134)
Q Consensus 687 ~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i-~l~~P~~eeR~~IL~~~l~~~~l~~~~~~ 765 (1134)
++.+.. +..||.||........ +. +.. ..+ .+.+.+.++-.++|...+... ....++.
T Consensus 251 -------l~~l~~---------~~~ilvTsR~~~~~~~-~~--~~~-~~v~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~ 309 (591)
T 1z6t_A 251 -------LKAFDS---------QCQILLTTRDKSVTDS-VM--GPK-YVVPVESSLGKEKGLEILSLFVNMK-KADLPEQ 309 (591)
T ss_dssp -------HHTTCS---------SCEEEEEESCGGGGTT-CC--SCE-EEEECCSSCCHHHHHHHHHHHHTSC-GGGSCTH
T ss_pred -------HHHhcC---------CCeEEEECCCcHHHHh-cC--CCc-eEeecCCCCCHHHHHHHHHHHhCCC-cccccHH
Confidence 111211 2566777765432111 11 111 122 235789999999998776432 1112345
Q ss_pred HHHHhhhcCCCChhhHHHH
Q 001162 766 LLDVASKCDGYDAYDLEIL 784 (1134)
Q Consensus 766 l~~la~~teG~s~~DL~~L 784 (1134)
...++..|+|. |--|+.+
T Consensus 310 ~~~i~~~~~G~-PLal~~~ 327 (591)
T 1z6t_A 310 AHSIIKECKGS-PLVVSLI 327 (591)
T ss_dssp HHHHHHHHTTC-HHHHHHH
T ss_pred HHHHHHHhCCC-cHHHHHH
Confidence 77899999885 5444443
No 229
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.06 E-value=0.0014 Score=74.01 Aligned_cols=84 Identities=14% Similarity=0.161 Sum_probs=52.4
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHHhccCC---ceeeEEEEEeccccc-cc-----------c--------------
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCCSRLS-LE-----------K-------------- 636 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~---~~~~~~~~v~~s~l~-~~-----------~-------------- 636 (1134)
|+++..-++|+||||+|||+++..+|....... .....+.+++..... .. .
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 456666799999999999999999998753220 012467777766521 00 0
Q ss_pred -hhhHHHHHHHHHHHHhh-cCCeEEEEcccchhcc
Q 001162 637 -GPIIRQALSNFISEALD-HAPSIVIFDNLDSIIS 669 (1134)
Q Consensus 637 -~~~~~~~l~~~f~~a~~-~~PsIL~IDEiD~L~~ 669 (1134)
.......+..+...... ..+.+|+||.+..+..
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 01111223333334444 6789999999998873
No 230
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.03 E-value=0.00033 Score=72.55 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=37.9
Q ss_pred ceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccchhc--------ccc-----cHHHHHHHHHHhhhcCCeEEEE
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY--------IGA-----SEQAVRDIFSKATAAAPCLLFF 943 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~~~--------~G~-----se~~v~~lf~~A~~~~P~VLfi 943 (1134)
-.+++||+|+|||+++..++..+ +.+.+.+.... -..| .|. ......++++.+. ..+.+|||
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~-d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviI 82 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI-DSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFI 82 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC------CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc-ccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEE
Confidence 47899999999999986665543 55555443220 0011 010 0011233444333 24679999
Q ss_pred cCcccc
Q 001162 944 DEFDSI 949 (1134)
Q Consensus 944 DEid~l 949 (1134)
||++.+
T Consensus 83 DE~Q~~ 88 (184)
T 2orw_A 83 DEVQFF 88 (184)
T ss_dssp CCGGGS
T ss_pred ECcccC
Confidence 999886
No 231
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.01 E-value=0.0081 Score=73.41 Aligned_cols=167 Identities=17% Similarity=0.173 Sum_probs=91.5
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHH-------c--CCcEEEEeCc
Q 001162 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAA-------C--SLRFISVKGP 912 (1134)
Q Consensus 842 ~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~-------~--~~~~i~i~~~ 912 (1134)
....++|-+...+.|.+.+.... ...+-++++||+|+|||++|..+++. . +.-++.+...
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~-----------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK-----------GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST-----------TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCeecccHHHHHHHHHHHhccc-----------CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 34568899988888888765320 11245889999999999999988642 2 2233444332
Q ss_pred c---cchhc------cc----------ccHHHHHHHHHHh-hh-cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhh
Q 001162 913 E---LLNKY------IG----------ASEQAVRDIFSKA-TA-AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1134)
Q Consensus 913 e---l~~~~------~G----------~se~~v~~lf~~A-~~-~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ 971 (1134)
+ ++..+ .+ .....+...+... .. .+|.+|+||+++.. ..+..
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----------------~~l~~ 253 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----------------WVLKA 253 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----------------HHHHT
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----------------HHHHH
Confidence 1 11110 11 1122233333322 22 26899999999752 12222
Q ss_pred cccccccccEEEEEecCCCCccchhhcCcCcccceeec---CCCCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCc
Q 001162 972 LDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFC---DFPSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFS 1047 (1134)
Q Consensus 972 ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~---~~p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~s 1047 (1134)
+ ..+..||.||..+.... .. . + ..+.+ ++.+.++-.++|...+..-.-........|++.++|..
T Consensus 254 l-----~~~~~ilvTsR~~~~~~-~~-~-~---~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 254 F-----DSQCQILLTTRDKSVTD-SV-M-G---PKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP 321 (591)
T ss_dssp T-----CSSCEEEEEESCGGGGT-TC-C-S---CEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH
T ss_pred h-----cCCCeEEEECCCcHHHH-hc-C-C---CceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc
Confidence 2 12345555665433221 11 1 1 22333 46788888888887765311111234677888888775
No 232
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.98 E-value=0.00085 Score=76.52 Aligned_cols=115 Identities=15% Similarity=0.158 Sum_probs=66.7
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHc---------CCcEEEEeCcccch--------hcccc---------------
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---------SLRFISVKGPELLN--------KYIGA--------------- 921 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~---------~~~~i~i~~~el~~--------~~~G~--------------- 921 (1134)
|+.++.-++++||||+|||++|..+|... +...+.++...-+. ...|.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 45566668999999999999999999862 56777777655211 00111
Q ss_pred -cH---HHHHHHHHHhhh--cCCeEEEEcCcccccCCCCCCCCcchh--hHHHhHhhhcccccccccEEEEEecC
Q 001162 922 -SE---QAVRDIFSKATA--AAPCLLFFDEFDSIAPKRGHDNTGVTD--RVVNQFLTELDGVEVLTGVFVFAATS 988 (1134)
Q Consensus 922 -se---~~v~~lf~~A~~--~~P~VLfiDEid~l~~~r~~~~~~~~~--rv~~~lL~~ld~~~~~~~v~vIatTn 988 (1134)
.+ ..+..+....+. ..+.+|+||.+..+....-.+.....+ ..+.+++..|..+....++.||.++.
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 11 112222333444 678899999999987421000011122 23566666665555445555655543
No 233
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.97 E-value=0.0016 Score=74.37 Aligned_cols=80 Identities=20% Similarity=0.229 Sum_probs=50.3
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccc----------------hhhHHHHHHHHHH
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK----------------GPIIRQALSNFIS 649 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~----------------~~~~~~~l~~~f~ 649 (1134)
|+++..-++|+|+||+|||+|+..++..+.... ..+.+++........ ...... +...+.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g---~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~-~~~~~~ 134 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ-ALEICD 134 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHH-HHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHH-HHHHHH
Confidence 456667799999999999999999998764332 346667664321100 001122 222222
Q ss_pred -HHhhcCCeEEEEcccchhcc
Q 001162 650 -EALDHAPSIVIFDNLDSIIS 669 (1134)
Q Consensus 650 -~a~~~~PsIL~IDEiD~L~~ 669 (1134)
......+.+|+||.+..+.+
T Consensus 135 ~l~~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHHHTCCSEEEEECGGGCCC
T ss_pred HHHhccCCCEEEEcCHHHhcc
Confidence 22346789999999998863
No 234
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.95 E-value=0.0091 Score=63.34 Aligned_cols=67 Identities=34% Similarity=0.456 Sum_probs=42.3
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCc--------ccchh----------cccc--cHHHHHHHHHHhhh
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGP--------ELLNK----------YIGA--SEQAVRDIFSKATA 935 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~--------el~~~----------~~G~--se~~v~~lf~~A~~ 935 (1134)
..+++.|+||||||+++-.+|..+ |..++.+... .+... |.|. .+..+..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~---- 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK---- 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH----
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh----
Confidence 468999999999999998888765 6666555442 12111 1111 1223333332
Q ss_pred cCCeEEEEcCcccc
Q 001162 936 AAPCLLFFDEFDSI 949 (1134)
Q Consensus 936 ~~P~VLfiDEid~l 949 (1134)
..|.++++||+...
T Consensus 83 ~~pdlvIVDElG~~ 96 (228)
T 2r8r_A 83 AAPSLVLVDELAHT 96 (228)
T ss_dssp HCCSEEEESCTTCB
T ss_pred cCCCEEEEeCCCCC
Confidence 46899999998765
No 235
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.95 E-value=0.0025 Score=72.53 Aligned_cols=84 Identities=12% Similarity=0.103 Sum_probs=51.7
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHHhccCC---ceeeEEEEEecccccc-c--------------------------
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCCSRLSL-E-------------------------- 635 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~---~~~~~~~~v~~s~l~~-~-------------------------- 635 (1134)
|+++..-++|+||||+|||+++..+|....... .....+++++...... .
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 456556689999999999999999998743210 0124677777765211 0
Q ss_pred chhhHHHHHHHHHHHHhh--cCCeEEEEcccchhcc
Q 001162 636 KGPIIRQALSNFISEALD--HAPSIVIFDNLDSIIS 669 (1134)
Q Consensus 636 ~~~~~~~~l~~~f~~a~~--~~PsIL~IDEiD~L~~ 669 (1134)
........+..+...... ..+.+|+||.+..+..
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 011111222223333444 5688999999998873
No 236
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.92 E-value=0.0012 Score=67.25 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=31.0
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCccc
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL 914 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el 914 (1134)
.-++|.|+||+||||+++++|..++.+++.++..++
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 358999999999999999999999999887765433
No 237
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.91 E-value=0.0015 Score=77.45 Aligned_cols=96 Identities=17% Similarity=0.233 Sum_probs=55.6
Q ss_pred ceEEEcCCCCchhHHHHHHHHHc---CC-cEEEEeCcccc----hhcccccHHHHHHHHHHh----------------hh
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAAC---SL-RFISVKGPELL----NKYIGASEQAVRDIFSKA----------------TA 935 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~---~~-~~i~i~~~el~----~~~~G~se~~v~~lf~~A----------------~~ 935 (1134)
.+++.|+||||||+++.+++..+ +. .++.+....-. ....|.....+..++... ..
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~ 126 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDL 126 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccc
Confidence 79999999999999999998766 33 44444332211 111111112233333211 01
Q ss_pred cCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCC
Q 001162 936 AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSR 989 (1134)
Q Consensus 936 ~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~ 989 (1134)
....+|++||+..+ ....+..++..+. ....++++|-.+.
T Consensus 127 ~~~~~iiiDE~~~~-----------~~~~~~~l~~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 127 AKCRVLICDEVSMY-----------DRKLFKILLSTIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp SSCSEEEESCGGGC-----------CHHHHHHHHHHSC---TTCEEEEEECTTS
T ss_pred cCCCEEEEECchhC-----------CHHHHHHHHHhcc---CCCEEEEECCHHH
Confidence 23469999999876 2345556665553 4556777775554
No 238
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.90 E-value=0.00082 Score=71.29 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=30.3
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHc---------CCcEEEEeCcc
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---------SLRFISVKGPE 913 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~---------~~~~i~i~~~e 913 (1134)
++.+..-+.|.||+|+|||++++.++... +...+.++..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 45556668999999999999999999844 33466666644
No 239
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.89 E-value=0.0075 Score=73.16 Aligned_cols=169 Identities=15% Similarity=0.143 Sum_probs=93.1
Q ss_pred ccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHH----HhccCCceeeEEEEEecccc
Q 001162 557 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAK----SLEHHKDLVAHIVFVCCSRL 632 (1134)
Q Consensus 557 ~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~----~l~~~~~~~~~~~~v~~s~l 632 (1134)
.|++..+++|.+.+..-- ....+.+.|+|+.|+|||+||+.+++ ...... -....++.+.-
T Consensus 131 ~GR~~~~~~l~~~L~~~~------------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F---~~~~wv~vs~~ 195 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC------------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINY---DSIVWLKDSGT 195 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT------------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTB---SEEEEEECCCC
T ss_pred CCchHHHHHHHHHHhccc------------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccC---CcEEEEEECCC
Confidence 389999999888773321 11235689999999999999999997 232222 23344444432
Q ss_pred cccch-----------------------hh-HHHHHHHHHHHHhhcC-CeEEEEcccchhccCCCCCCCCCCchhHHHHH
Q 001162 633 SLEKG-----------------------PI-IRQALSNFISEALDHA-PSIVIFDNLDSIISSSSDPEGSQPSTSVIALT 687 (1134)
Q Consensus 633 ~~~~~-----------------------~~-~~~~l~~~f~~a~~~~-PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~ 687 (1134)
..... .. ....+...+...-... +.+|+|||++... .+
T Consensus 196 ~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~----------------~~- 258 (549)
T 2a5y_B 196 APKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE----------------TI- 258 (549)
T ss_dssp STTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH----------------HH-
T ss_pred CCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch----------------hh-
Confidence 10000 00 0011222233332343 7899999997641 11
Q ss_pred HHHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCCCCHHHHHHHHHHHhhhccc-CCCHHHH
Q 001162 688 KFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSL-ECSDEIL 766 (1134)
Q Consensus 688 ~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~~~l~~~~l-~~~~~~l 766 (1134)
.+. ... +..||.||+...-. .... .....+.+++.+.++-.++|......... ....+..
T Consensus 259 -~~~----~~~----------gs~ilvTTR~~~v~-~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~ 319 (549)
T 2a5y_B 259 -RWA----QEL----------RLRCLVTTRDVEIS-NAAS---QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVL 319 (549)
T ss_dssp -HHH----HHT----------TCEEEEEESBGGGG-GGCC---SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHH
T ss_pred -ccc----ccC----------CCEEEEEcCCHHHH-HHcC---CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHH
Confidence 111 111 24567777653221 1111 12346889999999999999876432211 1112346
Q ss_pred HHHhhhcCCC
Q 001162 767 LDVASKCDGY 776 (1134)
Q Consensus 767 ~~la~~teG~ 776 (1134)
..|+..|.|.
T Consensus 320 ~~I~~~c~Gl 329 (549)
T 2a5y_B 320 NKTIELSSGN 329 (549)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhCCC
Confidence 7788888884
No 240
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.88 E-value=0.0027 Score=70.71 Aligned_cols=111 Identities=12% Similarity=0.166 Sum_probs=64.3
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHc-----CCcEEEEeCcccchh----ccc-----------ccHHHH-HHHHHH
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNK----YIG-----------ASEQAV-RDIFSK 932 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~-----~~~~i~i~~~el~~~----~~G-----------~se~~v-~~lf~~ 932 (1134)
|+.+. -++++||||+|||+|+-.++..+ +..++.++..+-+.. -.| .+...+ -.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 44555 58999999999999976665433 677888887653221 011 111222 223322
Q ss_pred ---hhhcCCeEEEEcCcccccCCCCC-CC-----Cc--chhhHHHhHhhhcccccccccEEEEE
Q 001162 933 ---ATAAAPCLLFFDEFDSIAPKRGH-DN-----TG--VTDRVVNQFLTELDGVEVLTGVFVFA 985 (1134)
Q Consensus 933 ---A~~~~P~VLfiDEid~l~~~r~~-~~-----~~--~~~rv~~~lL~~ld~~~~~~~v~vIa 985 (1134)
.+...|.+|+||-+..++++..- +. .+ ...|.++++|..|-++....++.+|.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~ 167 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIA 167 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 35678999999999999864211 11 01 23466777766655444444554443
No 241
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.87 E-value=0.0021 Score=68.99 Aligned_cols=114 Identities=25% Similarity=0.193 Sum_probs=61.8
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHH--HH--cCCcEEEEeCcccch------hcccc----------------------
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAA--AA--CSLRFISVKGPELLN------KYIGA---------------------- 921 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA--~~--~~~~~i~i~~~el~~------~~~G~---------------------- 921 (1134)
++.++.-+.|.||+|+|||++++.++ .. .+...+.+...+... ..+|.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 34556678999999999999999998 33 244445554432110 00110
Q ss_pred --------------cHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEec
Q 001162 922 --------------SEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT 987 (1134)
Q Consensus 922 --------------se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatT 987 (1134)
.+.....+........|.+|++||.-++..... ......+.+..++..+ .. .++.||.+|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~--d~~~~~~~l~~l~~~l---~~-~g~tii~vt 179 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE--EERKIREVLLKLNTIL---LE-MGVTTILTT 179 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS--SGGGHHHHHHHHHHHH---HH-HCCEEEEEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC--CHHHHHHHHHHHHHHH---HH-CCCeEEEEE
Confidence 112223333444567899999999987753211 1112233355555554 22 245555677
Q ss_pred CCCCcc
Q 001162 988 SRPDLL 993 (1134)
Q Consensus 988 n~p~~l 993 (1134)
...+..
T Consensus 180 H~~~~~ 185 (251)
T 2ehv_A 180 EAPDPQ 185 (251)
T ss_dssp CCC---
T ss_pred CCCCCC
Confidence 765554
No 242
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.85 E-value=0.0033 Score=66.54 Aligned_cols=30 Identities=30% Similarity=0.369 Sum_probs=25.0
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
++++..-+.|+||+|+|||||++.++..+.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 355556699999999999999999998653
No 243
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.84 E-value=0.0075 Score=72.45 Aligned_cols=140 Identities=16% Similarity=0.261 Sum_probs=84.5
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccC-CceeeEEEEEecccc--c---------c---cchhhHHHHHHH---------
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHH-KDLVAHIVFVCCSRL--S---------L---EKGPIIRQALSN--------- 646 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~-~~~~~~~~~v~~s~l--~---------~---~~~~~~~~~l~~--------- 646 (1134)
.|+|+.|.+|+|||++++.+...+... ......++.+|+... . . .........+..
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg~eLs~~~~lPHl~~~Vvtd~~~a~~~L~~lv~EMerR~ 294 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEMERRY 294 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSSHHHHTTTTCTTBSSSCBCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCChhhhHhhcCCCcccceeeCCHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999987765422 222366778887631 0 0 011111111111
Q ss_pred -HHHHH-----------h---------------------------hcCC-eEEEEcccchhccCCCCCCCCCCchhHHHH
Q 001162 647 -FISEA-----------L---------------------------DHAP-SIVIFDNLDSIISSSSDPEGSQPSTSVIAL 686 (1134)
Q Consensus 647 -~f~~a-----------~---------------------------~~~P-sIL~IDEiD~L~~~~~~~~~~~~~~~~~~l 686 (1134)
+|... . ..-| -+|+|||++.++.... ..+
T Consensus 295 ~ll~~~gvrni~~Yn~~~~~~~~~G~~~~dp~~~~~~~~~~~~~~~~lP~ivvVIDE~~~L~~~~~-----------~~~ 363 (574)
T 2iut_A 295 RLMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMMMIVG-----------KKV 363 (574)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHTTCCCBCTTCCCCSTTCCCCBCCCCCEEEEEESCCTTHHHHTC-----------HHH
T ss_pred HHHHHcCCccHHHHHHHHHHHhhcccccccccccccccccccccccCCCcEEEEEeCHHHHhhhhh-----------HHH
Confidence 11110 0 0123 4899999998863110 123
Q ss_pred HHHHHHHHHHhccccccccCCCcEEEEEecCCCC--CCChhhccCCCccccccCCCCCHHHHHHHHH
Q 001162 687 TKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE--KIPQSLTSSGRFDFHVQLPAPAASERKAILE 751 (1134)
Q Consensus 687 ~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~--~Ld~aL~~~gRF~~~i~l~~P~~eeR~~IL~ 751 (1134)
...+..+...-.. -+|.+|.+|+++. .++..++. -|...|.|...+..+...||.
T Consensus 364 ~~~L~~Iar~GRa--------~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 364 EELIARIAQKARA--------AGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp HHHHHHHHHHCTT--------TTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHHHHHHHS
T ss_pred HHHHHHHHHHHhh--------CCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHHHHHhcC
Confidence 3334333332211 1488999999887 78888887 788888898888888877764
No 244
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.80 E-value=0.0041 Score=66.68 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=23.0
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHH
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAK 612 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~ 612 (1134)
++++..-+.|.||+|+|||||++.++.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 355566699999999999999999983
No 245
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.79 E-value=0.0041 Score=72.15 Aligned_cols=84 Identities=10% Similarity=0.050 Sum_probs=50.2
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHHhccCC---ceeeEEEEEecccccc-c-----------c--------------
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCCSRLSL-E-----------K-------------- 636 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~---~~~~~~~~v~~s~l~~-~-----------~-------------- 636 (1134)
|+++..-++|+||||+|||+|++.++-...... .....+++++...... . .
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 456666799999999999999998775432110 0124567777654210 0 0
Q ss_pred -hhhHHHHHHHHHHHHhhcCCeEEEEcccchhcc
Q 001162 637 -GPIIRQALSNFISEALDHAPSIVIFDNLDSIIS 669 (1134)
Q Consensus 637 -~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~ 669 (1134)
.......+..+........|.+|+||++-.++.
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 001112223333334446799999999988764
No 246
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.77 E-value=0.0022 Score=74.49 Aligned_cols=116 Identities=13% Similarity=0.167 Sum_probs=64.8
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHc---------CCcEEEEeCcccch--------hccccc--------------
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---------SLRFISVKGPELLN--------KYIGAS-------------- 922 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~---------~~~~i~i~~~el~~--------~~~G~s-------------- 922 (1134)
|+.+..-++|+||||||||+|++.++-.. +...+.++..+.+. .-+|..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 55666679999999999999999776332 34577777655211 001111
Q ss_pred -----HHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcch--hhHHHhHhhhcccccccccEEEEEecCC
Q 001162 923 -----EQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT--DRVVNQFLTELDGVEVLTGVFVFAATSR 989 (1134)
Q Consensus 923 -----e~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~--~rv~~~lL~~ld~~~~~~~v~vIatTn~ 989 (1134)
...+..+........|.+|+||++-.++...-.+..+.. .+.+.+++..|..+....++.||.++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 112222333334567899999999988754221111112 2334556655555444445555555544
No 247
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.75 E-value=0.0059 Score=65.29 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=23.8
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHHh
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSL 614 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~l 614 (1134)
|+++..-++|+||||+|||+++..++..+
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45556668999999999999988887654
No 248
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.71 E-value=0.0017 Score=74.16 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=31.9
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHc---------CCcEEEEeCcc
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---------SLRFISVKGPE 913 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~---------~~~~i~i~~~e 913 (1134)
++.+..-+.|+||||+|||+|++.++..+ +...+.++..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 45556678999999999999999999876 24667777654
No 249
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.66 E-value=0.016 Score=76.89 Aligned_cols=178 Identities=12% Similarity=0.134 Sum_probs=97.1
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhcc-CCceeeEEEEEeccc
Q 001162 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEH-HKDLVAHIVFVCCSR 631 (1134)
Q Consensus 553 ~~~l~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~-~~~~~~~~~~v~~s~ 631 (1134)
...++|++..++++.+.+... ...++-+.|+|+.|+|||+||+.+++.... .......+..++.+.
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~-------------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKL-------------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTT-------------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CceeccHHHHHHHHHHHHhhc-------------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 445788999998888865321 112355899999999999999988865311 111112233444433
Q ss_pred cccc---------------------chhhHHHHHHHHHHHHhhc--CCeEEEEcccchhccCCCCCCCCCCchhHHHHHH
Q 001162 632 LSLE---------------------KGPIIRQALSNFISEALDH--APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTK 688 (1134)
Q Consensus 632 l~~~---------------------~~~~~~~~l~~~f~~a~~~--~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~ 688 (1134)
.... ........+...+...... ++.+|+|||++... .
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~----------------~--- 250 (1249)
T 3sfz_A 190 QDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW----------------V--- 250 (1249)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH----------------H---
T ss_pred cCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH----------------H---
Confidence 1100 0000011122222222222 37899999997531 1
Q ss_pred HHHHHHHHhccccccccCCCcEEEEEecCCCCCCChhhccCCCccccccCCC-CCHHHHHHHHHHHhhhcccCCCHHHHH
Q 001162 689 FLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPA-PAASERKAILEHEIQRRSLECSDEILL 767 (1134)
Q Consensus 689 ~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~Ld~aL~~~gRF~~~i~l~~-P~~eeR~~IL~~~l~~~~l~~~~~~l~ 767 (1134)
++.+.. +..||.||+...-.... . .....+.+++ ++.++-.++|..+..... .-.++...
T Consensus 251 -----~~~~~~---------~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-~~~~~~~~ 311 (1249)
T 3sfz_A 251 -----LKAFDN---------QCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKK-EDLPAEAH 311 (1249)
T ss_dssp -----HTTTCS---------SCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCS-TTCCTHHH
T ss_pred -----HHhhcC---------CCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCCh-hhCcHHHH
Confidence 111111 24677777755432111 1 1234567775 899999999987664322 22234577
Q ss_pred HHhhhcCCCChhhHH
Q 001162 768 DVASKCDGYDAYDLE 782 (1134)
Q Consensus 768 ~la~~teG~s~~DL~ 782 (1134)
.|++.+.|. |--|+
T Consensus 312 ~i~~~~~gl-PLal~ 325 (1249)
T 3sfz_A 312 SIIKECKGS-PLVVS 325 (1249)
T ss_dssp HHHHHTTTC-HHHHH
T ss_pred HHHHHhCCC-HHHHH
Confidence 889999885 43343
No 250
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.66 E-value=0.0056 Score=68.13 Aligned_cols=81 Identities=15% Similarity=0.132 Sum_probs=48.7
Q ss_pred CCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccc--------cc--------hhhHHHHHHHHHHH
Q 001162 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL--------EK--------GPIIRQALSNFISE 650 (1134)
Q Consensus 587 ~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~--------~~--------~~~~~~~l~~~f~~ 650 (1134)
+++. -++|+||||+|||+|+-.++..+.... ....+.|+++..-.. -. ....++....+.+.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g-~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQY-PDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHC-TTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcC-CCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 4444 689999999999999887776654320 014567777654211 00 01222220122222
Q ss_pred ---HhhcCCeEEEEcccchhcc
Q 001162 651 ---ALDHAPSIVIFDNLDSIIS 669 (1134)
Q Consensus 651 ---a~~~~PsIL~IDEiD~L~~ 669 (1134)
.....|.+|+||-+..+.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHhhccCceEEEEeccccccc
Confidence 2456799999999999974
No 251
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.66 E-value=0.0065 Score=71.08 Aligned_cols=72 Identities=14% Similarity=0.076 Sum_probs=50.5
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccch-------------------hccc-ccHHHHHHHHHHhh
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN-------------------KYIG-ASEQAVRDIFSKAT 934 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~-------------------~~~G-~se~~v~~lf~~A~ 934 (1134)
+.-+++.|++|+||||++..+|..+ |..+..+.+..+.. .+.+ .....+++.++.++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4568899999999999999998766 66676666543211 1112 23344567788888
Q ss_pred hcCCeEEEEcCcccc
Q 001162 935 AAAPCLLFFDEFDSI 949 (1134)
Q Consensus 935 ~~~P~VLfiDEid~l 949 (1134)
...+.+++||.+..+
T Consensus 180 ~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRH 194 (443)
T ss_dssp HTTCSEEEEECCCCS
T ss_pred hCCCCEEEEECCCcc
Confidence 777899999988554
No 252
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.65 E-value=0.006 Score=73.27 Aligned_cols=74 Identities=16% Similarity=0.302 Sum_probs=51.2
Q ss_pred eEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCC--ccchhhcCcCcccceeecCCCCHHH
Q 001162 939 CLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPD--LLDAALLRPGRLDRLLFCDFPSPRE 1016 (1134)
Q Consensus 939 ~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~--~ld~allrpgRfd~~i~~~~p~~~e 1016 (1134)
-+|+|||++.++... ...+ ...+..+-..-..-++.+|.+|.+|. .++..++. .|...|.|...+..+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~-~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~D 414 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKV-EELIARIAQKARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKID 414 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHH-HHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHH
T ss_pred EEEEEeCHHHHhhhh-------hHHH-HHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHH
Confidence 589999999886431 1122 22222222122345788899999998 68888877 888889999999888
Q ss_pred HHHHHH
Q 001162 1017 RLDILK 1022 (1134)
Q Consensus 1017 r~~Il~ 1022 (1134)
...|+.
T Consensus 415 sr~ILd 420 (574)
T 2iut_A 415 SRTILD 420 (574)
T ss_dssp HHHHHS
T ss_pred HHHhcC
Confidence 877774
No 253
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.65 E-value=0.017 Score=68.77 Aligned_cols=75 Identities=12% Similarity=0.275 Sum_probs=48.3
Q ss_pred Ce-EEEEcccchhccCCCCCCCCCCchhHHHHHHHHHHHHHHhccccccccCCCcEEEEEecCCCC--CCChhhccCCCc
Q 001162 656 PS-IVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE--KIPQSLTSSGRF 732 (1134)
Q Consensus 656 Ps-IL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~--~Ld~aL~~~gRF 732 (1134)
|. +++|||+..++.. ....+...+..+...-.. -++.+|.+|+++. .++..++. .|
T Consensus 297 P~ivlvIDE~~~ll~~-----------~~~~~~~~l~~Lar~gRa--------~GI~LIlaTQrp~~dvl~~~i~~--n~ 355 (512)
T 2ius_A 297 PYIVVLVDEFADLMMT-----------VGKKVEELIARLAQKARA--------AGIHLVLATQRPSVDVITGLIKA--NI 355 (512)
T ss_dssp CEEEEEEETHHHHHHH-----------HHHHHHHHHHHHHHHCGG--------GTEEEEEEESCCCTTTSCHHHHH--HC
T ss_pred CcEEEEEeCHHHHHhh-----------hhHHHHHHHHHHHHHhhh--------CCcEEEEEecCCccccccHHHHh--hc
Confidence 54 8999999877620 011233333333222111 1478888888876 57877777 77
Q ss_pred cccccCCCCCHHHHHHHHH
Q 001162 733 DFHVQLPAPAASERKAILE 751 (1134)
Q Consensus 733 ~~~i~l~~P~~eeR~~IL~ 751 (1134)
...+.|...+..+...|+.
T Consensus 356 ~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 356 PTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp CEEEEECCSSHHHHHHHHS
T ss_pred CCeEEEEcCCHHHHHHhcC
Confidence 7788888888888887774
No 254
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.64 E-value=0.021 Score=75.81 Aligned_cols=169 Identities=14% Similarity=0.110 Sum_probs=96.7
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc-------CCcEEEEeCccc
Q 001162 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-------SLRFISVKGPEL 914 (1134)
Q Consensus 842 ~~~~i~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~-------~~~~i~i~~~el 914 (1134)
....++|.++..+.|.+.+...- ...+-+.++|++|+|||+||+.+++.. ...++.++.+..
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~-----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLN-----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTT-----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CCceeccHHHHHHHHHHHHhhcc-----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 34567899998888888774321 112357899999999999999888642 223334443331
Q ss_pred ch------------h---------cccccHHHHHHHHHHhhhc--CCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhh
Q 001162 915 LN------------K---------YIGASEQAVRDIFSKATAA--APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1134)
Q Consensus 915 ~~------------~---------~~G~se~~v~~lf~~A~~~--~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ 971 (1134)
.. . ........+.+.+...... ++.+|+||+++.. ..+..
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~-----------------~~~~~ 253 (1249)
T 3sfz_A 191 DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP-----------------WVLKA 253 (1249)
T ss_dssp CHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH-----------------HHHTT
T ss_pred CchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH-----------------HHHHh
Confidence 00 0 0011223334444433333 3789999999753 11111
Q ss_pred cccccccccEEEEEecCCCCccchhhcCcCcccceeecCC-CCHHHHHHHHHHHHccCCCCCcccHHHHHHhccCCc
Q 001162 972 LDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDF-PSPRERLDILKVISRKLPLADDVDLEAIAHMTEGFS 1047 (1134)
Q Consensus 972 ld~~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~-p~~~er~~Il~~~~~~~~~~~~vd~~~La~~t~g~s 1047 (1134)
+ . .+.-||.||..+...... . .....+.+++ .+.++-.++|........-........|++.+.|..
T Consensus 254 ~---~--~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 254 F---D--NQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSP 321 (1249)
T ss_dssp T---C--SSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCH
T ss_pred h---c--CCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCH
Confidence 2 2 234455577755433211 1 2235566765 788888889987764432222233667888888775
No 255
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.61 E-value=0.0058 Score=65.42 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=22.8
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHH
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKS 613 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~ 613 (1134)
|+++..-++|+|+||+|||+++..+|..
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4555566999999999999999887654
No 256
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.61 E-value=0.0025 Score=64.77 Aligned_cols=25 Identities=20% Similarity=0.500 Sum_probs=23.2
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
..|+|+|+||+||||+++++++.++
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4599999999999999999999986
No 257
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.58 E-value=0.0047 Score=69.55 Aligned_cols=29 Identities=28% Similarity=0.260 Sum_probs=24.5
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHHh
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSL 614 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~l 614 (1134)
|+++..-++|+|+||+|||+++..+|...
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45556668999999999999999999764
No 258
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.54 E-value=0.0083 Score=68.42 Aligned_cols=29 Identities=31% Similarity=0.362 Sum_probs=25.6
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHHh
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSL 614 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~l 614 (1134)
++++..-+.|+||+|+|||+|++.++..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46666679999999999999999999986
No 259
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.53 E-value=0.0072 Score=67.54 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccc-----
Q 001162 562 TASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK----- 636 (1134)
Q Consensus 562 ~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~----- 636 (1134)
..+-+.+.+...+.+..+ ..+...++.-++|+|++|+||||++..+|..+.... ..+..+++.......
T Consensus 79 ~~~~~~~~l~~~l~~~~~---~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g---~kV~lv~~D~~r~~a~eqL~ 152 (306)
T 1vma_A 79 ALESLKEIILEILNFDTK---LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG---KSVVLAAADTFRAAAIEQLK 152 (306)
T ss_dssp HHHHHHHHHHHHTCSCCC---CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEECTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCC---CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcC---CEEEEEccccccHHHHHHHH
Confidence 334455555555543321 112234556699999999999999999999886432 234445554322110
Q ss_pred ---------------hhhHHHHHHHHHHHHhhcCCeEEEEcccc
Q 001162 637 ---------------GPIIRQALSNFISEALDHAPSIVIFDNLD 665 (1134)
Q Consensus 637 ---------------~~~~~~~l~~~f~~a~~~~PsIL~IDEiD 665 (1134)
.+.......+.+..+....+.+++||+.-
T Consensus 153 ~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 153 IWGERVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred HHHHHcCCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 01111222334444555778999999763
No 260
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.52 E-value=0.0058 Score=65.33 Aligned_cols=39 Identities=31% Similarity=0.175 Sum_probs=28.9
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCc
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGP 912 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~ 912 (1134)
|+.++.-++++||||+|||+++..+|... +...+.++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 45566678999999999999988776543 5566666543
No 261
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.46 E-value=0.0022 Score=73.35 Aligned_cols=97 Identities=20% Similarity=0.328 Sum_probs=61.0
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc----CCcEEEEeCc-ccch---------hcccccHHHHHHHHHHhhhcCCeEEEEc
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGP-ELLN---------KYIGASEQAVRDIFSKATAAAPCLLFFD 944 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~----~~~~i~i~~~-el~~---------~~~G~se~~v~~lf~~A~~~~P~VLfiD 944 (1134)
..+++.||+|+||||+.++++..+ +..++.+.-+ ++.. ...+.....+.+.+..|-...|.+|++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 458899999999999999998865 3455544322 2211 1112222345567888888899999999
Q ss_pred CcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCcc
Q 001162 945 EFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL 993 (1134)
Q Consensus 945 Eid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~l 993 (1134)
|.-. .+....++... ..+..|+.|+...+.+
T Consensus 204 Ep~d-------------~e~~~~~~~~~-----~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 204 EMRD-------------LETIRLALTAA-----ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCCS-------------HHHHHHHHHHH-----HTTCEEEEEESCSSHH
T ss_pred CCCC-------------HHHHHHHHHHH-----hcCCEEEEEEccChHH
Confidence 9831 23333334332 1244577788877654
No 262
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.45 E-value=0.005 Score=65.57 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=42.6
Q ss_pred ceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcc-------cchhcccccH-----HHHHHHHHHhhh----cCCeE
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPE-------LLNKYIGASE-----QAVRDIFSKATA----AAPCL 940 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~e-------l~~~~~G~se-----~~v~~lf~~A~~----~~P~V 940 (1134)
-++++||+|+|||+++..++..+ |.+++.++... +.+. .|... ....++++.++. ..+.+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 46778999999999888777655 56666664322 2221 12110 112345555443 45889
Q ss_pred EEEcCcccc
Q 001162 941 LFFDEFDSI 949 (1134)
Q Consensus 941 LfiDEid~l 949 (1134)
|+|||+.-+
T Consensus 93 ViIDEaQ~l 101 (223)
T 2b8t_A 93 IGIDEVQFF 101 (223)
T ss_dssp EEECSGGGS
T ss_pred EEEecCccC
Confidence 999999865
No 263
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.44 E-value=0.0034 Score=68.59 Aligned_cols=72 Identities=24% Similarity=0.475 Sum_probs=45.9
Q ss_pred CCCCceEEEcCCCCchhHHHHHHHHHc----CCcEEEEeCc-ccc---------hhcccccHHHHHHHHHHhhhcCCeEE
Q 001162 876 RLRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGP-ELL---------NKYIGASEQAVRDIFSKATAAAPCLL 941 (1134)
Q Consensus 876 ~~~~~vLL~GppGtGKT~lA~alA~~~----~~~~i~i~~~-el~---------~~~~G~se~~v~~lf~~A~~~~P~VL 941 (1134)
.+..-+++.||+|+||||++++++..+ ...++....+ ++. ...+|.....++..+..|-...|.+|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 445568899999999999999999865 2333332211 111 00112122345667777767789999
Q ss_pred EEcCcc
Q 001162 942 FFDEFD 947 (1134)
Q Consensus 942 fiDEid 947 (1134)
++||.-
T Consensus 103 llDEp~ 108 (261)
T 2eyu_A 103 FVGEMR 108 (261)
T ss_dssp EESCCC
T ss_pred EeCCCC
Confidence 999983
No 264
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.42 E-value=0.0017 Score=79.11 Aligned_cols=97 Identities=22% Similarity=0.262 Sum_probs=57.3
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccch----hcccccHHHHHHHHHHh---------hhcCCeEEE
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN----KYIGASEQAVRDIFSKA---------TAAAPCLLF 942 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~----~~~G~se~~v~~lf~~A---------~~~~P~VLf 942 (1134)
..+++.||||||||+++.+++..+ +.+++.+....-.. ...|.....+..++... ......+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 468999999999999999998754 56665554322111 11111112223333111 112347999
Q ss_pred EcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCC
Q 001162 943 FDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSR 989 (1134)
Q Consensus 943 iDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~ 989 (1134)
|||+..+ ....+..++..+ ....+++++|-.+.
T Consensus 285 IDEasml-----------~~~~~~~Ll~~~---~~~~~lilvGD~~Q 317 (574)
T 3e1s_A 285 VDEVSMM-----------GDALMLSLLAAV---PPGARVLLVGDTDQ 317 (574)
T ss_dssp ECCGGGC-----------CHHHHHHHHTTS---CTTCEEEEEECTTS
T ss_pred EcCccCC-----------CHHHHHHHHHhC---cCCCEEEEEecccc
Confidence 9999876 334566666555 34556888876655
No 265
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.42 E-value=0.014 Score=64.10 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=25.7
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHHhcc
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEH 616 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~l~~ 616 (1134)
|++...-++|+||+|+|||||++.++..+..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4555566999999999999999999987653
No 266
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.42 E-value=0.0019 Score=66.14 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=28.4
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHcCCcEEEE
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i 909 (1134)
...++|.||||||||++|+.+|+.+|.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 34699999999999999999999999988754
No 267
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.39 E-value=0.0023 Score=69.97 Aligned_cols=28 Identities=32% Similarity=0.568 Sum_probs=24.1
Q ss_pred CCCceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 588 PLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 588 ~~p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
++...++|.||+|+||||+++++++.+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 3445689999999999999999999875
No 268
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.38 E-value=0.009 Score=71.22 Aligned_cols=75 Identities=20% Similarity=0.375 Sum_probs=50.2
Q ss_pred Ce-EEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCC--ccchhhcCcCcccceeecCCCCH
Q 001162 938 PC-LLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPD--LLDAALLRPGRLDRLLFCDFPSP 1014 (1134)
Q Consensus 938 P~-VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~--~ld~allrpgRfd~~i~~~~p~~ 1014 (1134)
|. +|+|||+..+... .... +..++..+-.....-++.+|.+|.+|. .++..++. .|...|.|...+.
T Consensus 297 P~ivlvIDE~~~ll~~-------~~~~-~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~ 366 (512)
T 2ius_A 297 PYIVVLVDEFADLMMT-------VGKK-VEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSK 366 (512)
T ss_dssp CEEEEEEETHHHHHHH-------HHHH-HHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSH
T ss_pred CcEEEEEeCHHHHHhh-------hhHH-HHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCH
Confidence 54 8999999887531 0112 223333332112333688888999987 47777776 7888889999999
Q ss_pred HHHHHHHH
Q 001162 1015 RERLDILK 1022 (1134)
Q Consensus 1015 ~er~~Il~ 1022 (1134)
.+...|+.
T Consensus 367 ~dsr~ilg 374 (512)
T 2ius_A 367 IDSRTILD 374 (512)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 98888875
No 269
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.36 E-value=0.0026 Score=65.70 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=19.0
Q ss_pred eEEEEcCCCccHHHHHHHHHHHh
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSL 614 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l 614 (1134)
-++++||+|+||||++..++..+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999986666554
No 270
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.35 E-value=0.026 Score=63.27 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=30.6
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
|+++..-++|.|+||+|||+++..+|....... .++.+++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEEC
Confidence 456666699999999999999999997764332 34555554
No 271
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.35 E-value=0.0025 Score=71.80 Aligned_cols=113 Identities=14% Similarity=0.169 Sum_probs=65.0
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHc---------------C----CcEEEEeCcccch-h----c---ccc-----
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---------------S----LRFISVKGPELLN-K----Y---IGA----- 921 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~---------------~----~~~i~i~~~el~~-~----~---~G~----- 921 (1134)
|+++..-++++||||+|||++|..+|... | .+++.++...-+. . + .|.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 44556678999999999999999998753 3 5677777654310 0 0 111
Q ss_pred ----------c-HH---HHHHHHHHhhh-cCCeEEEEcCcccccCCCCCCCCcchh--hHHHhHhhhcccccccccEEEE
Q 001162 922 ----------S-EQ---AVRDIFSKATA-AAPCLLFFDEFDSIAPKRGHDNTGVTD--RVVNQFLTELDGVEVLTGVFVF 984 (1134)
Q Consensus 922 ----------s-e~---~v~~lf~~A~~-~~P~VLfiDEid~l~~~r~~~~~~~~~--rv~~~lL~~ld~~~~~~~v~vI 984 (1134)
+ +. .+..+....+. ..+.+|+||.+..+....-.+.....+ ..+.+++..|..+....++.||
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi 253 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVL 253 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 1 11 12223333444 568899999999986421111111122 2456666666555444555555
Q ss_pred Ee
Q 001162 985 AA 986 (1134)
Q Consensus 985 at 986 (1134)
.+
T Consensus 254 ~~ 255 (322)
T 2i1q_A 254 VT 255 (322)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 272
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.35 E-value=0.017 Score=63.95 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=26.2
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHHhcc
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEH 616 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~l~~ 616 (1134)
++++..-++|.||||+|||||++.++..+..
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4566667999999999999999999988753
No 273
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.35 E-value=0.0022 Score=66.84 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=28.8
Q ss_pred CCCceEEEcCCCCchhHHHHHHHHHcCCcEEEE
Q 001162 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (1134)
Q Consensus 877 ~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i 909 (1134)
+...++|.|||||||||+++.+|+.++..++..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 345799999999999999999999999888653
No 274
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.32 E-value=0.0063 Score=63.10 Aligned_cols=23 Identities=43% Similarity=0.801 Sum_probs=20.9
Q ss_pred ceEEEcCCCCchhHHHHHHHHHc
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAAC 902 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~ 902 (1134)
.+.|.||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999876
No 275
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.32 E-value=0.011 Score=63.51 Aligned_cols=33 Identities=30% Similarity=0.268 Sum_probs=28.7
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCc
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGP 912 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~ 912 (1134)
.++++||+|+|||.+|.+++...+...+.+.+.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 489999999999999999999888777777665
No 276
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.32 E-value=0.0067 Score=66.72 Aligned_cols=29 Identities=24% Similarity=0.226 Sum_probs=23.8
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHc
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~ 902 (1134)
++....-++|+||+|+|||+++..++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44556678999999999999999998643
No 277
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.32 E-value=0.0019 Score=67.34 Aligned_cols=28 Identities=39% Similarity=0.527 Sum_probs=24.5
Q ss_pred CCCceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 588 PLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 588 ~~p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.++..++|+|+|||||||+++.+++.++
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3446799999999999999999999986
No 278
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.29 E-value=0.0021 Score=73.48 Aligned_cols=72 Identities=25% Similarity=0.381 Sum_probs=43.1
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEe-cccccc---------cchhhHHHHHHHHHHHHhhcCCeEEE
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC-CSRLSL---------EKGPIIRQALSNFISEALDHAPSIVI 660 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~-~s~l~~---------~~~~~~~~~l~~~f~~a~~~~PsIL~ 660 (1134)
+.++|.||+|+||||++++++..+..... ..++.+. .-.+.. ...+.-...+...+..+....|.+|+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~--~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKY--HHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCC--CEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCC--cEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 56999999999999999999998753211 1112111 111100 00000001234466666678999999
Q ss_pred Eccc
Q 001162 661 FDNL 664 (1134)
Q Consensus 661 IDEi 664 (1134)
+||.
T Consensus 202 lDEp 205 (356)
T 3jvv_A 202 VGEM 205 (356)
T ss_dssp ESCC
T ss_pred cCCC
Confidence 9998
No 279
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.27 E-value=0.0059 Score=67.66 Aligned_cols=38 Identities=26% Similarity=0.348 Sum_probs=30.8
Q ss_pred CCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCccc
Q 001162 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL 914 (1134)
Q Consensus 877 ~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el 914 (1134)
.+.-++|.||||+||||+|+.++..++..++.+++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 34568899999999999999999998656677776444
No 280
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.26 E-value=0.01 Score=69.42 Aligned_cols=72 Identities=15% Similarity=0.102 Sum_probs=47.3
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccch----------h------c---ccc-cHHHHHHHHHHhh
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN----------K------Y---IGA-SEQAVRDIFSKAT 934 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~----------~------~---~G~-se~~v~~lf~~A~ 934 (1134)
+.-+++.||+|+||||++..+|..+ |..+..+.+.-+.. . | .+. .....+..+..+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 4568889999999999999998765 66666665432110 0 1 111 1223445666666
Q ss_pred hcCCeEEEEcCcccc
Q 001162 935 AAAPCLLFFDEFDSI 949 (1134)
Q Consensus 935 ~~~P~VLfiDEid~l 949 (1134)
...+.+++||....+
T Consensus 177 ~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTCSEEEEEECCCS
T ss_pred hcCCCEEEEECCCCc
Confidence 667899999988654
No 281
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.25 E-value=0.017 Score=68.28 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=25.9
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
|+++..-++|.|+||+|||+++..+|..+.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 566666799999999999999999998765
No 282
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.23 E-value=0.0053 Score=66.65 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=32.4
Q ss_pred CCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCccc
Q 001162 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL 914 (1134)
Q Consensus 877 ~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el 914 (1134)
.+..++|.|+||+||||+|+.++..++..++.+++..+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34568999999999999999999999877777777665
No 283
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.21 E-value=0.015 Score=68.03 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=51.3
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccccc--------------------chhhHHHHHHHHH
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE--------------------KGPIIRQALSNFI 648 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~--------------------~~~~~~~~l~~~f 648 (1134)
+|.-++++|++|+||||++..+|..+.... ..+..++|..+... ........+.+.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G---~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al 175 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRG---YKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGV 175 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCC---CeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHH
Confidence 356799999999999999999999886543 34555666543211 1112334455667
Q ss_pred HHHhhcCCeEEEEcccch
Q 001162 649 SEALDHAPSIVIFDNLDS 666 (1134)
Q Consensus 649 ~~a~~~~PsIL~IDEiD~ 666 (1134)
..+......+++||..-.
T Consensus 176 ~~a~~~~~DvVIIDTaGr 193 (443)
T 3dm5_A 176 DYFKSKGVDIIIVDTAGR 193 (443)
T ss_dssp HHHHHTTCSEEEEECCCC
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 777776788999998744
No 284
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.20 E-value=0.0029 Score=65.05 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=27.7
Q ss_pred CCCceEEEcCCCCchhHHHHHHHHHcCCcEEE
Q 001162 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (1134)
Q Consensus 877 ~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~ 908 (1134)
.+.-++|.|+||+||||+++.++..++..++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 34568999999999999999999999887655
No 285
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.20 E-value=0.015 Score=61.94 Aligned_cols=25 Identities=32% Similarity=0.239 Sum_probs=21.0
Q ss_pred eEEEEcCCCccHHHHHHHHHHHhcc
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSLEH 616 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l~~ 616 (1134)
-++++||+|+||||++..++..+..
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~ 38 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEY 38 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3788999999999999888877643
No 286
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.20 E-value=0.027 Score=62.61 Aligned_cols=68 Identities=16% Similarity=0.238 Sum_probs=42.9
Q ss_pred CCCceEEEcCCCCchhHHHHHHHHHc----CCcEEEEeCcccc-------hhc---------ccccHHHHHHHHHHhhhc
Q 001162 877 LRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGPELL-------NKY---------IGASEQAVRDIFSKATAA 936 (1134)
Q Consensus 877 ~~~~vLL~GppGtGKT~lA~alA~~~----~~~~i~i~~~el~-------~~~---------~G~se~~v~~lf~~A~~~ 936 (1134)
.+.-++|.||+|+||||++..+|..+ |..+..+.+.... ..| .......++..+..+ .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~--~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF--S 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--c
Confidence 34568899999999999999998754 4566666553211 000 112233455555544 5
Q ss_pred CCeEEEEcCc
Q 001162 937 APCLLFFDEF 946 (1134)
Q Consensus 937 ~P~VLfiDEi 946 (1134)
.|.+++||-.
T Consensus 182 ~~dlvIiDT~ 191 (296)
T 2px0_A 182 EYDHVFVDTA 191 (296)
T ss_dssp GSSEEEEECC
T ss_pred CCCEEEEeCC
Confidence 5789999943
No 287
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.19 E-value=0.0024 Score=65.46 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=23.8
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
+..|+|+|++||||||+++.+|+.++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35699999999999999999999986
No 288
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.18 E-value=0.0026 Score=65.41 Aligned_cols=28 Identities=39% Similarity=0.730 Sum_probs=24.8
Q ss_pred CCCceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 588 PLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 588 ~~p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
..+.-|+|.|+||+||||+++.+++.++
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456699999999999999999999886
No 289
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.15 E-value=0.003 Score=72.76 Aligned_cols=75 Identities=19% Similarity=0.338 Sum_probs=43.9
Q ss_pred CCCCceEEEEcCCCccHHHHHHHHHHHhccC-CceeeEEEEEecc-cc--cc------c-chhhHHHHHHHHHHHHhhcC
Q 001162 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHH-KDLVAHIVFVCCS-RL--SL------E-KGPIIRQALSNFISEALDHA 655 (1134)
Q Consensus 587 ~~~p~~vLL~GppGtGKTtLaralA~~l~~~-~~~~~~~~~v~~s-~l--~~------~-~~~~~~~~l~~~f~~a~~~~ 655 (1134)
..+...++|.||+|+||||+++++++.+... .. .+..++.. .+ .. . ..+.-...+...+..+....
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g---~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~ 209 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSY---HIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALRED 209 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCC---EEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCc---EEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhC
Confidence 4455669999999999999999999987532 11 12222110 00 00 0 00000012334555555578
Q ss_pred CeEEEEccc
Q 001162 656 PSIVIFDNL 664 (1134)
Q Consensus 656 PsIL~IDEi 664 (1134)
|.++++||+
T Consensus 210 pd~illdE~ 218 (372)
T 2ewv_A 210 PDVIFVGEM 218 (372)
T ss_dssp CSEEEESCC
T ss_pred cCEEEECCC
Confidence 999999998
No 290
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.14 E-value=0.004 Score=63.56 Aligned_cols=31 Identities=39% Similarity=0.663 Sum_probs=27.6
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHcCCcEEE
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~~~~~i~ 908 (1134)
...++|.|+||+|||++++.+|+.++..++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 4569999999999999999999999887764
No 291
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.14 E-value=0.021 Score=63.76 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=46.3
Q ss_pred CCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccch-------hc------------c-cccHHHHHHHHHHh
Q 001162 877 LRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN-------KY------------I-GASEQAVRDIFSKA 933 (1134)
Q Consensus 877 ~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~-------~~------------~-G~se~~v~~lf~~A 933 (1134)
.+.-+++.||+|+||||++..+|..+ +..+..+.+.-+.. .| . |+......+.+..|
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 44568899999999999999999765 55555554432110 01 1 12222234456666
Q ss_pred hhcCCeEEEEcCccc
Q 001162 934 TAAAPCLLFFDEFDS 948 (1134)
Q Consensus 934 ~~~~P~VLfiDEid~ 948 (1134)
....|.+++||+...
T Consensus 183 ~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 183 LARNKDVVIIDTAGR 197 (306)
T ss_dssp HHTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCc
Confidence 777889999998754
No 292
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.13 E-value=0.02 Score=67.47 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=30.3
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
|+++..-++|+|+||+|||+++..+|........ .++.+++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g--~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG--VGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--CCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEEC
Confidence 5666666999999999999999999987653222 33455544
No 293
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.12 E-value=0.0032 Score=63.32 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=27.2
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCcEEEEe
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVK 910 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~~i~i~ 910 (1134)
-++|.||||+||||+++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999998876543
No 294
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.09 E-value=0.0091 Score=64.76 Aligned_cols=40 Identities=28% Similarity=0.460 Sum_probs=30.8
Q ss_pred CCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccc
Q 001162 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (1134)
Q Consensus 587 ~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l 632 (1134)
...|..++|.|+||+||||+++.+++.++ ..++.++...+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~------~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ------GNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT------TCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC------CCcEEEecHHH
Confidence 34456799999999999999999999875 23445666554
No 295
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.07 E-value=0.0076 Score=66.77 Aligned_cols=39 Identities=31% Similarity=0.545 Sum_probs=29.5
Q ss_pred CCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccc
Q 001162 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (1134)
Q Consensus 588 ~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l 632 (1134)
..|.-++|.||||+||||+++.+++.+. .....++++.+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~------~~~~~Is~D~~ 69 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ------GNVIVIDNDTF 69 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT------TCCEEECTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC------CCeEEEechHh
Confidence 3456699999999999999999999873 22455666444
No 296
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.03 E-value=0.0037 Score=63.53 Aligned_cols=29 Identities=31% Similarity=0.509 Sum_probs=26.5
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCcEEE
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~~i~ 908 (1134)
.++|.|+||+|||++|+.||+.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999988764
No 297
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.01 E-value=0.0033 Score=64.63 Aligned_cols=31 Identities=32% Similarity=0.540 Sum_probs=26.7
Q ss_pred CCceEEEcCCCCchhHHHHHHHHH-cCCcEEE
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAA-CSLRFIS 908 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~-~~~~~i~ 908 (1134)
+..++|+|+||||||++++.+|.. +|.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 346999999999999999999999 6866654
No 298
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.00 E-value=0.014 Score=68.27 Aligned_cols=75 Identities=20% Similarity=0.194 Sum_probs=48.7
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccccc--------------------chhhHHHHHHHHH
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE--------------------KGPIIRQALSNFI 648 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~--------------------~~~~~~~~l~~~f 648 (1134)
+|.-+++.|++|+||||++..+|..+.... ..+..++|...... ............+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G---~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al 172 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG---YKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGV 172 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT---CCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHH
Confidence 356689999999999999999999886543 34445555432111 0011222334556
Q ss_pred HHHhhcCCeEEEEcccch
Q 001162 649 SEALDHAPSIVIFDNLDS 666 (1134)
Q Consensus 649 ~~a~~~~PsIL~IDEiD~ 666 (1134)
..+.+..+.+++||....
T Consensus 173 ~~a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 173 DIFVKNKMDIIIVDTAGR 190 (433)
T ss_dssp HHTTTTTCSEEEEEECCC
T ss_pred HHHHhcCCCEEEEECCCC
Confidence 666667789999998744
No 299
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.99 E-value=0.014 Score=64.65 Aligned_cols=37 Identities=16% Similarity=0.114 Sum_probs=28.3
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHc----CCcEEEEe
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVK 910 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~----~~~~i~i~ 910 (1134)
++.++.-++|.||||+|||++++.+|... |.+++.++
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 44556678999999999999999998755 43555554
No 300
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.98 E-value=0.0048 Score=62.32 Aligned_cols=29 Identities=34% Similarity=0.583 Sum_probs=25.8
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCCcEE
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFI 907 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~~~i 907 (1134)
..+.|.||+||||||+++.+|..++..++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 35899999999999999999999987654
No 301
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.98 E-value=0.0087 Score=65.21 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=30.8
Q ss_pred CceEEEcCCCCchhHHHHHHHHH---cCCcEEEEeCcccc
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAA---CSLRFISVKGPELL 915 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~---~~~~~i~i~~~el~ 915 (1134)
.-++|.|+||+|||++|+.++.. .|..++.++...+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 35889999999999999999997 78888877765543
No 302
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.95 E-value=0.01 Score=64.57 Aligned_cols=25 Identities=40% Similarity=0.667 Sum_probs=22.6
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.-|+|+|+||+||||+++.+++.+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4599999999999999999999854
No 303
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.94 E-value=0.0049 Score=63.35 Aligned_cols=26 Identities=46% Similarity=0.640 Sum_probs=23.3
Q ss_pred CceEEEEcCCCccHHHHHHHHHHH-hc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKS-LE 615 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~-l~ 615 (1134)
+..|+|+|+|||||||+++.+++. ++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g 36 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDG 36 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 456999999999999999999998 55
No 304
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.94 E-value=0.0074 Score=61.31 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=17.3
Q ss_pred CCceEEEcCCCCchhHHHHH
Q 001162 878 RSNVLLYGPPGCGKTHIVGA 897 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~a 897 (1134)
+.-+.|.||+|+||||++++
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 34578999999999999994
No 305
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.93 E-value=0.0055 Score=68.72 Aligned_cols=36 Identities=33% Similarity=0.485 Sum_probs=31.7
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccc
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 915 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~ 915 (1134)
.+++.||+|||||++|+.+|+.++..++.++.-.+.
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy 42 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPCELISVDSALIY 42 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTB
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhh
Confidence 589999999999999999999999888888765543
No 306
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.93 E-value=0.015 Score=68.86 Aligned_cols=38 Identities=13% Similarity=0.097 Sum_probs=29.6
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHc----CCcEEEEeC
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKG 911 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~----~~~~i~i~~ 911 (1134)
|+.++.-+++.|+||+|||+++..+|... |.+++.++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 45666679999999999999998888643 556766664
No 307
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.93 E-value=0.0048 Score=62.93 Aligned_cols=26 Identities=42% Similarity=0.650 Sum_probs=23.7
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
+..|+|+|+||+||||+++.+++.++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45699999999999999999999886
No 308
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.92 E-value=0.0045 Score=62.35 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=27.9
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCCcEEEE
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~~~i~i 909 (1134)
.+++|.|+||||||++++.||+.+|.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 3689999999999999999999999988653
No 309
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.92 E-value=0.066 Score=56.75 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.4
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccC
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHH 617 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~ 617 (1134)
-.+++.|++|+||||++-.+|..+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 459999999999999999999887644
No 310
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.92 E-value=0.005 Score=62.99 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=26.6
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCcEEE
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~~i~ 908 (1134)
.++|.|+||+|||++|+.+|+.+|.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 48999999999999999999999988764
No 311
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.91 E-value=0.0036 Score=64.33 Aligned_cols=38 Identities=29% Similarity=0.367 Sum_probs=31.8
Q ss_pred CCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCccc
Q 001162 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL 914 (1134)
Q Consensus 877 ~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el 914 (1134)
.+.-+.|.||+|+||||+++.++...+...+.+++.++
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 44568899999999999999999988777788877654
No 312
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=95.91 E-value=0.012 Score=52.00 Aligned_cols=74 Identities=14% Similarity=0.236 Sum_probs=59.5
Q ss_pred CccceEEEEecCCcchHHHHHhcHHHHHHHHhcccceecCCCEEEEEecCceEEEEEEcccCCCCCeEEccCCCEEEEec
Q 001162 91 VLKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVVQLVPGTEVAVAP 170 (1134)
Q Consensus 91 ~~~~~~v~veP~t~dDwei~e~~a~~~e~~ll~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~l~~~tev~vap 170 (1134)
-..|+.|.+.|... -++-.--.+||-..|+. |.|..|+.+++-+-+ ..+.|+|.++.|+ +++++++|+|.+.+
T Consensus 9 ~~~A~kVvLAP~~~--i~~~~~~~~~lk~~L~g--rPV~~GD~I~i~~~G-~~i~F~Vv~t~P~--~V~Vt~~T~I~i~~ 81 (83)
T 2jv2_A 9 GVIMSELKLKPLPK--VELPPDFVDVIRIKLQG--KTVRTGDVIGISILG-KEVKFKVVQAYPS--PLRVEDRTKITLVT 81 (83)
T ss_dssp CCCCCEEEEEESSS--CCCCHHHHHHHHHHHTT--SEECTTCEEEEEETT-EEEEEEEEEEESS--SEECCTTSEEEECC
T ss_pred ceEEEEEEEcCCCc--eecCccHHHHHHHHHCC--CCccCCCEEEEeeCC-CEEEEEEEEecCc--cEEECCCcEEEEEe
Confidence 45788899999841 11111115899999999 889999999988755 8899999999997 89999999999976
Q ss_pred c
Q 001162 171 K 171 (1134)
Q Consensus 171 k 171 (1134)
+
T Consensus 82 e 82 (83)
T 2jv2_A 82 H 82 (83)
T ss_dssp C
T ss_pred c
Confidence 5
No 313
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.89 E-value=0.0058 Score=70.32 Aligned_cols=73 Identities=23% Similarity=0.458 Sum_probs=46.9
Q ss_pred CCCCCceEEEcCCCCchhHHHHHHHHHc----CCcEEEEeCc-ccc-h---hcc-----cccHHHHHHHHHHhhhcCCeE
Q 001162 875 LRLRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGP-ELL-N---KYI-----GASEQAVRDIFSKATAAAPCL 940 (1134)
Q Consensus 875 ~~~~~~vLL~GppGtGKT~lA~alA~~~----~~~~i~i~~~-el~-~---~~~-----G~se~~v~~lf~~A~~~~P~V 940 (1134)
..++..+++.||+|+||||++++++..+ ...++.+..+ ++. . .|+ |.....++..+..+-...|.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~ 212 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 212 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCE
Confidence 3455568999999999999999999865 2444444321 110 0 011 112223455666676678999
Q ss_pred EEEcCcc
Q 001162 941 LFFDEFD 947 (1134)
Q Consensus 941 LfiDEid 947 (1134)
|++||+-
T Consensus 213 illdE~~ 219 (372)
T 2ewv_A 213 IFVGEMR 219 (372)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 9999984
No 314
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.88 E-value=0.0044 Score=62.32 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=22.4
Q ss_pred eEEEEcCCCccHHHHHHHHHHHhc
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
-|+|.|+|||||||+++.+++.++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999986
No 315
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.85 E-value=0.028 Score=62.45 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=30.1
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccc
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~ 631 (1134)
.+..++|.||+|+||||++..+|..+....+ ..+..++++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEecCc
Confidence 3556999999999999999999998863222 2345555544
No 316
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.80 E-value=0.0037 Score=64.24 Aligned_cols=28 Identities=36% Similarity=0.470 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCccHHHHHHHHHHHh
Q 001162 587 LPLPGHILIHGPPGSGKTSLAKAVAKSL 614 (1134)
Q Consensus 587 ~~~p~~vLL~GppGtGKTtLaralA~~l 614 (1134)
+..+..+.|.||+|+||||+++.+++.+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 3445669999999999999999999864
No 317
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.77 E-value=0.0049 Score=66.99 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=28.8
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCc
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGP 912 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~ 912 (1134)
-+++.||||+|||++|+.||..++..++..+.-
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 378999999999999999999999888776553
No 318
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.75 E-value=0.02 Score=59.44 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=46.2
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc---CCcEEEE---eCc------ccchhc-----------ccc------cHHHHHHH
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISV---KGP------ELLNKY-----------IGA------SEQAVRDI 929 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i---~~~------el~~~~-----------~G~------se~~v~~l 929 (1134)
..+++|+++|.|||++|-++|-.. |.++..+ ++. +++... .-. .+...+..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 469999999999999998888644 7777766 331 233332 000 12344555
Q ss_pred HHHhhh----cCCeEEEEcCcccc
Q 001162 930 FSKATA----AAPCLLFFDEFDSI 949 (1134)
Q Consensus 930 f~~A~~----~~P~VLfiDEid~l 949 (1134)
+..++. ...++|++||+-..
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~a 132 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYM 132 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCcc
Confidence 555543 55789999999553
No 319
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.73 E-value=0.0062 Score=64.37 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=27.1
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHcCCcEEE
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~~~~~i~ 908 (1134)
+..++|.|+||+||||+|+.||+.++.+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 3468999999999999999999999977654
No 320
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.73 E-value=0.0067 Score=63.07 Aligned_cols=32 Identities=38% Similarity=0.500 Sum_probs=27.6
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHcCCcEEEE
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i 909 (1134)
+..++|.|+||+||||+|+.|++.++.+++..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 34589999999999999999999999886543
No 321
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.71 E-value=0.007 Score=61.09 Aligned_cols=25 Identities=32% Similarity=0.745 Sum_probs=23.0
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
..+.|+||+||||||+++.+++.++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999999876
No 322
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.71 E-value=0.012 Score=62.88 Aligned_cols=38 Identities=24% Similarity=0.147 Sum_probs=28.1
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHH----cCCcEEEEeC
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAA----CSLRFISVKG 911 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~----~~~~~i~i~~ 911 (1134)
|++++.-++++|+||+|||++|.-+|.. .+.+++.++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 4566667999999999999998776533 2566666654
No 323
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.71 E-value=0.029 Score=62.94 Aligned_cols=25 Identities=44% Similarity=0.673 Sum_probs=23.2
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
..++|+||+|||||++++.+|+.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999999976
No 324
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.70 E-value=0.0069 Score=62.78 Aligned_cols=24 Identities=42% Similarity=0.899 Sum_probs=21.9
Q ss_pred eEEEEcCCCccHHHHHHHHHHHhc
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.+.|.||+|+||||+++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 388999999999999999999874
No 325
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.69 E-value=0.0086 Score=61.87 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=23.2
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCcE
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLRF 906 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~~ 906 (1134)
.++|.||+|+|||+|++.|.......|
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 589999999999999999998875443
No 326
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.68 E-value=0.0064 Score=61.01 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=25.5
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCcEEEE
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~~i~i 909 (1134)
-++|.||||+||||+|+.+ ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8888887653
No 327
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.68 E-value=0.0064 Score=61.31 Aligned_cols=29 Identities=28% Similarity=0.565 Sum_probs=26.4
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCcEEE
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~~i~ 908 (1134)
.++|.|+||+|||++|+.+|+.+|.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 58999999999999999999999987664
No 328
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.67 E-value=0.0058 Score=64.78 Aligned_cols=29 Identities=28% Similarity=0.504 Sum_probs=25.3
Q ss_pred CCCCceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 587 ~~~p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
...++-|+|.||||+||+|.|+.|++.++
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 44556689999999999999999999986
No 329
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.67 E-value=0.0056 Score=62.14 Aligned_cols=24 Identities=50% Similarity=0.749 Sum_probs=22.6
Q ss_pred eEEEEcCCCccHHHHHHHHHHHhc
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.++|.|+|||||||+++.+|+.++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 499999999999999999999987
No 330
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.63 E-value=0.0054 Score=62.71 Aligned_cols=24 Identities=38% Similarity=0.736 Sum_probs=22.6
Q ss_pred eEEEEcCCCccHHHHHHHHHHHhc
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.|+|+|+|||||||+++.+++.++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 399999999999999999999987
No 331
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.63 E-value=0.025 Score=66.71 Aligned_cols=38 Identities=18% Similarity=0.064 Sum_probs=29.6
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHc----CCcEEEEeC
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKG 911 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~----~~~~i~i~~ 911 (1134)
|+.++.-+++.|+||+|||++|..+|... |.+++.++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 56666778999999999999998887643 556766654
No 332
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.61 E-value=0.0068 Score=64.04 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=27.3
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCCcEEEE
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~~~i~i 909 (1134)
..++|.|+||+||||+|+.||+.++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4589999999999999999999999777654
No 333
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.60 E-value=0.0064 Score=62.14 Aligned_cols=30 Identities=30% Similarity=0.553 Sum_probs=25.9
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCCcEEE
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~~~i~ 908 (1134)
..++|.|+||+||||+++.+|+.+|.+++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 358899999999999999999999876543
No 334
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.60 E-value=0.0061 Score=62.06 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=22.7
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCCcEE
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFI 907 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~~~i 907 (1134)
.-++|.|+||+||||+|+.+++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45889999999999999999999999877
No 335
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.59 E-value=0.0093 Score=60.39 Aligned_cols=26 Identities=35% Similarity=0.508 Sum_probs=23.1
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
+..++|+|++|+||||+++.+++.++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 34589999999999999999999875
No 336
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.58 E-value=0.0076 Score=62.05 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=27.2
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCCcEEEE
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~~~i~i 909 (1134)
.-++|.|+||+||||+++.+|+.++.+++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4689999999999999999999999876543
No 337
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.58 E-value=0.0078 Score=63.31 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=26.3
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCcEEEE
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~~i~i 909 (1134)
.++|.||||+||||+|+.+|+.++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478999999999999999999998776544
No 338
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.57 E-value=0.006 Score=61.42 Aligned_cols=25 Identities=40% Similarity=0.631 Sum_probs=23.5
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.+|+|.|++||||||+++.+++.++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999999987
No 339
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.57 E-value=0.0073 Score=63.53 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=28.7
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccch
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 916 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~ 916 (1134)
.++|.||||+||+|.|+.||+.+|.+. ++..+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdllR 36 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDILR 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHHH
Confidence 478999999999999999999998765 45555543
No 340
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.56 E-value=0.0072 Score=62.01 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=26.2
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCCcEEE
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~~~i~ 908 (1134)
.-++|.|+||+||||+|+.+++.++.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 358899999999999999999999877643
No 341
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.54 E-value=0.0076 Score=64.06 Aligned_cols=32 Identities=22% Similarity=0.434 Sum_probs=27.7
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHcCCcEEEE
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i 909 (1134)
+..++|.|+||+||||+|+.||+.++..++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 34689999999999999999999998876543
No 342
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.54 E-value=0.018 Score=70.62 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=19.5
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC 902 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~ 902 (1134)
..+++.|+||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 368999999999999887776543
No 343
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.54 E-value=0.057 Score=65.40 Aligned_cols=166 Identities=13% Similarity=0.128 Sum_probs=87.9
Q ss_pred CChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHH----HcCCcE---EEEeCccc-----
Q 001162 847 GGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAA----ACSLRF---ISVKGPEL----- 914 (1134)
Q Consensus 847 ~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~----~~~~~~---i~i~~~el----- 914 (1134)
.|.+..++.|.+.+... .......+.++|++|+|||+||+.+++ .....| +.++.++-
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 38888888887776421 011234688999999999999999997 332221 23333331
Q ss_pred -------chhcccc------------cHHHHHHHHHHhhhc-CCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhccc
Q 001162 915 -------LNKYIGA------------SEQAVRDIFSKATAA-APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDG 974 (1134)
Q Consensus 915 -------~~~~~G~------------se~~v~~lf~~A~~~-~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~ 974 (1134)
+....+. ....+...+...-.. ++.+|+||+++... .+ .+.
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~------------~~--~~~----- 261 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE------------TI--RWA----- 261 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH------------HH--HHH-----
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch------------hh--ccc-----
Confidence 0000000 112233344443334 37899999997631 11 111
Q ss_pred ccccccEEEEEecCCCCccchhhcCcCcccceeecCCCCHHHHHHHHHHHHccCCCCCcc--cHHHHHHhccCCc
Q 001162 975 VEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDV--DLEAIAHMTEGFS 1047 (1134)
Q Consensus 975 ~~~~~~v~vIatTn~p~~ld~allrpgRfd~~i~~~~p~~~er~~Il~~~~~~~~~~~~v--d~~~La~~t~g~s 1047 (1134)
...+.-||.||....... .. +..+..+.+++.+.++-.++|.......+...+. ....+++.+.|..
T Consensus 262 --~~~gs~ilvTTR~~~v~~-~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 262 --QELRLRCLVTTRDVEISN-AA---SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp --HHTTCEEEEEESBGGGGG-GC---CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred --ccCCCEEEEEcCCHHHHH-Hc---CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 113444555776433211 11 1133567888889999888888774332210111 1344556666554
No 344
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.54 E-value=0.0069 Score=62.97 Aligned_cols=26 Identities=38% Similarity=0.655 Sum_probs=23.6
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
|..|+|+|+|||||||+++.+++.++
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34599999999999999999999886
No 345
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.54 E-value=0.0074 Score=62.82 Aligned_cols=25 Identities=40% Similarity=0.705 Sum_probs=23.1
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.-|+|+|++|+||||+++.+++.++
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999999886
No 346
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.53 E-value=0.0075 Score=63.91 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=31.1
Q ss_pred CCCCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccchh
Q 001162 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 917 (1134)
Q Consensus 876 ~~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~~~ 917 (1134)
+.++-++|.||||+||+|.|+.||+.+|.+. ++..+++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdllR~ 66 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLLRA 66 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHHHH
Confidence 3445688899999999999999999998654 555565543
No 347
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.53 E-value=0.0073 Score=61.98 Aligned_cols=26 Identities=23% Similarity=0.508 Sum_probs=23.5
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
|..|+|.|+|||||||+++.+++.++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35599999999999999999999886
No 348
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.52 E-value=0.0094 Score=62.02 Aligned_cols=30 Identities=33% Similarity=0.649 Sum_probs=26.7
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCCcEEE
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~~~i~ 908 (1134)
.-++|.|++|+||||+|+.|++.+|..++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 468999999999999999999999877654
No 349
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.51 E-value=0.01 Score=61.83 Aligned_cols=27 Identities=37% Similarity=0.593 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
++.-+.|.||+|+||||+++.+++.++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 345699999999999999999999875
No 350
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.51 E-value=0.017 Score=58.60 Aligned_cols=22 Identities=36% Similarity=0.696 Sum_probs=18.6
Q ss_pred CCCCceEEEEcCCCccHHHHHH
Q 001162 587 LPLPGHILIHGPPGSGKTSLAK 608 (1134)
Q Consensus 587 ~~~p~~vLL~GppGtGKTtLar 608 (1134)
++.+.-+.|.||+|+|||||++
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHH
Confidence 3444568999999999999999
No 351
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.50 E-value=0.0086 Score=64.00 Aligned_cols=31 Identities=26% Similarity=0.451 Sum_probs=27.2
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCCcEEEE
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~~~i~i 909 (1134)
..++|.|+|||||||+|+.||+.++..++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4699999999999999999999999776553
No 352
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.49 E-value=0.0081 Score=60.82 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=20.6
Q ss_pred ceEEEEcCCCccHHHHHHHHHH
Q 001162 591 GHILIHGPPGSGKTSLAKAVAK 612 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~ 612 (1134)
.-|+|.|+||+||||+++.+++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999998
No 353
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.49 E-value=0.008 Score=61.87 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=23.6
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
+..|+|.|+|||||||+++.+++.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34599999999999999999999886
No 354
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.47 E-value=0.0092 Score=67.48 Aligned_cols=72 Identities=21% Similarity=0.298 Sum_probs=50.0
Q ss_pred CCCceEEEcCCCCchhHHHHHHHHHcC--CcEEEEeCcccch-----h---cccccHHHHHHHHHHhhhcCCeEEEEcCc
Q 001162 877 LRSNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPELLN-----K---YIGASEQAVRDIFSKATAAAPCLLFFDEF 946 (1134)
Q Consensus 877 ~~~~vLL~GppGtGKT~lA~alA~~~~--~~~i~i~~~el~~-----~---~~G~se~~v~~lf~~A~~~~P~VLfiDEi 946 (1134)
++..+++.||+|+||||++++++.... ...+.++....+. . +........+..+.+|-...|.+|++||.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence 345799999999999999999998774 3455665532111 1 22002234567788888889999999997
Q ss_pred cc
Q 001162 947 DS 948 (1134)
Q Consensus 947 d~ 948 (1134)
-+
T Consensus 250 ~~ 251 (330)
T 2pt7_A 250 RS 251 (330)
T ss_dssp CS
T ss_pred Ch
Confidence 54
No 355
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.46 E-value=0.009 Score=59.94 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=26.3
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCcEEE
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~~i~ 908 (1134)
.++|.|+||+|||++|+.+++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 47899999999999999999999988764
No 356
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.46 E-value=0.0083 Score=63.37 Aligned_cols=26 Identities=27% Similarity=0.590 Sum_probs=23.6
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
+..|+|.|+|||||||+++.+++.++
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34599999999999999999999986
No 357
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.46 E-value=0.0075 Score=65.51 Aligned_cols=24 Identities=42% Similarity=0.515 Sum_probs=22.3
Q ss_pred eEEEEcCCCccHHHHHHHHHHHhc
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
-++|+||+||||||+++.+|+.++
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 389999999999999999999886
No 358
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.45 E-value=0.0085 Score=62.94 Aligned_cols=30 Identities=30% Similarity=0.476 Sum_probs=26.3
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCcEEEE
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~~i~i 909 (1134)
.++|.||||+||||+|+.+++.++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999998776543
No 359
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.44 E-value=0.081 Score=62.20 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=30.7
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
|+.+..-++|.|+||+|||+++..+|....... ..+.+++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g---~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTT---CEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcC---CEEEEEEC
Confidence 566666699999999999999999988765432 34555554
No 360
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.42 E-value=0.0081 Score=61.45 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=23.5
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhcc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEH 616 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~ 616 (1134)
.-|+|.|+|||||||+++.+++.++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45999999999999999999998863
No 361
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.41 E-value=0.074 Score=63.62 Aligned_cols=42 Identities=7% Similarity=-0.002 Sum_probs=31.0
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEec
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~ 629 (1134)
|+++..-++|.|+||+|||+++..+|..+..... ..+.+++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g--~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMG--KKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSC--CCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcC--CcEEEEec
Confidence 5666666999999999999999999988754312 34555544
No 362
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.40 E-value=0.0072 Score=63.58 Aligned_cols=23 Identities=43% Similarity=0.746 Sum_probs=21.9
Q ss_pred EEEEcCCCccHHHHHHHHHHHhc
Q 001162 593 ILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 593 vLL~GppGtGKTtLaralA~~l~ 615 (1134)
|+|.||||+||+|.|+.|++.++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78999999999999999999976
No 363
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.39 E-value=0.0074 Score=60.51 Aligned_cols=23 Identities=52% Similarity=0.730 Sum_probs=20.6
Q ss_pred eEEEEcCCCccHHHHHHHHHHHhc
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
-|+|+|+|||||||+++.+ +.++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTT
T ss_pred EEEEECCCCCCHHHHHHHH-HHCC
Confidence 4899999999999999999 7665
No 364
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.39 E-value=0.0071 Score=61.27 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=22.6
Q ss_pred ceEEEcCCCCchhHHHHHHHH-HcCCcE
Q 001162 880 NVLLYGPPGCGKTHIVGAAAA-ACSLRF 906 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~-~~~~~~ 906 (1134)
-++|.|+||+||||+|+.+++ ..+..+
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred EEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 488999999999999999998 455433
No 365
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.38 E-value=0.052 Score=60.87 Aligned_cols=38 Identities=21% Similarity=0.072 Sum_probs=29.4
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeC
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKG 911 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~ 911 (1134)
|+.++.-+++.|+||+|||++|..+|... +.+++.++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 55666679999999999999999888654 456666654
No 366
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.38 E-value=0.0079 Score=61.55 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.9
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcC
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACS 903 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~ 903 (1134)
.-++|.|+||+||||+++.|++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999887
No 367
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.37 E-value=0.0083 Score=60.46 Aligned_cols=24 Identities=29% Similarity=0.605 Sum_probs=22.7
Q ss_pred eEEEEcCCCccHHHHHHHHHHHhc
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.|+|+|++||||||+++.+++.++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999987
No 368
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.36 E-value=0.0088 Score=64.44 Aligned_cols=26 Identities=35% Similarity=0.643 Sum_probs=23.7
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
|..+.|.||+|+||||+++.+++.++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45699999999999999999999886
No 369
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.36 E-value=0.0099 Score=60.72 Aligned_cols=25 Identities=36% Similarity=0.698 Sum_probs=22.9
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
..++|+|+|||||||+++.+++.++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999999886
No 370
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.34 E-value=0.0096 Score=61.44 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=26.2
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCCcEEE
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~~~i~ 908 (1134)
.-++|.|+||+||||+|+.+|+.++..++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 458999999999999999999999866544
No 371
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.32 E-value=0.011 Score=60.47 Aligned_cols=26 Identities=27% Similarity=0.638 Sum_probs=23.6
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
+..|+|+|+|||||||+++.+++.++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35699999999999999999999886
No 372
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.30 E-value=0.0084 Score=63.73 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=23.6
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
+..|+|.|+|||||||+++.+++.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35699999999999999999999876
No 373
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.30 E-value=0.0093 Score=61.53 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=23.2
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.-|+|.|+|||||||+++.+++.++
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999999986
No 374
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.30 E-value=0.0059 Score=69.18 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=27.0
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCCcEEE
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~~~i~ 908 (1134)
.+++|.||+|+|||++++++|..++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 369999999999999999999999888755
No 375
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.29 E-value=0.011 Score=63.82 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=27.5
Q ss_pred CCCceEEEcCCCCchhHHHHHHHHHcCCcEEE
Q 001162 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (1134)
Q Consensus 877 ~~~~vLL~GppGtGKT~lA~alA~~~~~~~i~ 908 (1134)
.+..++|.||||+||||+|+.|++.++..++.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is 59 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLS 59 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 34569999999999999999999999876654
No 376
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.28 E-value=0.0098 Score=60.88 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=26.6
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCCcEEEE
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~~~i~i 909 (1134)
.-++|.|+|||||||+|+.+++.++..++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 3588999999999999999999998766543
No 377
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.28 E-value=0.011 Score=59.83 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=27.4
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCccc
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL 914 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el 914 (1134)
..++|.||+|+||||+++.++..+|..++ ++.++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i--~~d~~ 42 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFL--DGDFL 42 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEE--EGGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEE--eCccc
Confidence 45889999999999999999998876554 44443
No 378
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.26 E-value=0.012 Score=61.32 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=28.0
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCccc
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL 914 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el 914 (1134)
+.-+.|.||+|+||||+++.++..+|..+ +++.++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 44688999999999999999999987544 445444
No 379
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.25 E-value=0.0085 Score=61.36 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=23.0
Q ss_pred eEEEEcCCCccHHHHHHHHHHHhcc
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSLEH 616 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l~~ 616 (1134)
-|+|.|+|||||||+++.+++.++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999999999864
No 380
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.24 E-value=0.01 Score=62.79 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=23.7
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
+..|+|.|+|||||||+++.+++.++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35599999999999999999999986
No 381
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.23 E-value=0.014 Score=71.09 Aligned_cols=27 Identities=37% Similarity=0.586 Sum_probs=23.6
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccC
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHH 617 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~ 617 (1134)
+.++|.||||||||+++++++..+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 569999999999999999999887543
No 382
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.22 E-value=0.015 Score=59.28 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.+..+.|+|++||||||+++.+++.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345689999999999999999999873
No 383
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.22 E-value=0.0094 Score=63.06 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=26.3
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCCcEEE
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~~~i~ 908 (1134)
..++|.||||+||||+++.||+.++..++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 468999999999999999999999975543
No 384
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.22 E-value=0.012 Score=61.23 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=26.7
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCCcEEEE
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~~~i~i 909 (1134)
.-++|.|+|||||||+++.+++.+|..++..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 3588999999999999999999998766553
No 385
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.18 E-value=0.0093 Score=62.97 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=23.1
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
..|+|.|+|||||||+++.+++.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999999986
No 386
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.17 E-value=0.011 Score=63.57 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.|..|+|.||||+||||+++.+++.++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346699999999999999999999876
No 387
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.15 E-value=0.012 Score=62.78 Aligned_cols=25 Identities=36% Similarity=0.614 Sum_probs=23.3
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
..|+|.|+|||||||+++.|++.++
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999999986
No 388
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.15 E-value=0.021 Score=59.31 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=28.8
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCccc
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPEL 914 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el 914 (1134)
+.-+.|.||+||||||+++++|..+ |...+.+++.++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 3458899999999999999999988 555456665444
No 389
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.13 E-value=0.012 Score=61.91 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=26.4
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCcEEEE
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~~i~i 909 (1134)
.++|.|+||+||||+|+.||+.++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 478999999999999999999998776554
No 390
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.13 E-value=0.015 Score=66.75 Aligned_cols=25 Identities=32% Similarity=0.623 Sum_probs=21.7
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC 902 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~ 902 (1134)
..-+.|.||+|||||||.++||...
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3457899999999999999999865
No 391
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.13 E-value=0.024 Score=62.07 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.1
Q ss_pred CCCceEEEcCCCCchhHHHHHHHHHc
Q 001162 877 LRSNVLLYGPPGCGKTHIVGAAAAAC 902 (1134)
Q Consensus 877 ~~~~vLL~GppGtGKT~lA~alA~~~ 902 (1134)
++.-+.|.||+|+|||||+++++...
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34457899999999999999999755
No 392
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.12 E-value=0.013 Score=61.00 Aligned_cols=28 Identities=36% Similarity=0.399 Sum_probs=24.5
Q ss_pred CCCceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 588 PLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 588 ~~p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.++.-+.|.||+|+||||+++.+++.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3446689999999999999999999985
No 393
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.09 E-value=0.0097 Score=62.49 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=21.8
Q ss_pred EEEEcCCCccHHHHHHHHHHHhc
Q 001162 593 ILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 593 vLL~GppGtGKTtLaralA~~l~ 615 (1134)
|+|.|||||||||+++.+++.++
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999999876
No 394
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.08 E-value=0.013 Score=60.75 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=23.4
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
+..|+|+|++||||||+++.+++.++
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34599999999999999999999876
No 395
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.06 E-value=0.036 Score=60.90 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=22.1
Q ss_pred CCCceEEEcCCCCchhHHHHHHHHHc
Q 001162 877 LRSNVLLYGPPGCGKTHIVGAAAAAC 902 (1134)
Q Consensus 877 ~~~~vLL~GppGtGKT~lA~alA~~~ 902 (1134)
++.-+.|.||+|+|||||+++++...
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34458899999999999999999765
No 396
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.06 E-value=0.0093 Score=62.69 Aligned_cols=24 Identities=21% Similarity=0.560 Sum_probs=22.1
Q ss_pred eEEEEcCCCccHHHHHHHHHHHhc
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.|+|+|||||||||+++.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999999876
No 397
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.03 E-value=0.07 Score=55.27 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=22.0
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
+.|++|+++|.||||+|-.+|-...
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~ 53 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV 53 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 5599999999999999999987654
No 398
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.03 E-value=0.011 Score=59.37 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=22.4
Q ss_pred eEEEEcCCCccHHHHHHHHHHHhc
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.|+|+|++||||||+++.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999999886
No 399
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.02 E-value=0.039 Score=69.59 Aligned_cols=59 Identities=15% Similarity=0.149 Sum_probs=36.4
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCch--hHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHH
Q 001162 841 SGWDDVGGLTDIQNAIKEMIELPSKFP--NIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAA 901 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~~~~~~--~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~ 901 (1134)
..|++++--..+.+.+......|.... .+... +.....+++.||+|+|||+++..++..
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~--l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRRELPVHAQRDEFLKL--YQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHH--HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccccCCCHHHHHHHHHhhcCChHHHHHHHHHH--HhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 357777666677777766655553221 11111 122346999999999999977666543
No 400
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.01 E-value=0.048 Score=57.80 Aligned_cols=102 Identities=20% Similarity=0.301 Sum_probs=0.0
Q ss_pred CCCCCceEEEcCCCCchhHHHHHHHHHcCC-cEE------------------------------------EEeCcccchh
Q 001162 875 LRLRSNVLLYGPPGCGKTHIVGAAAAACSL-RFI------------------------------------SVKGPELLNK 917 (1134)
Q Consensus 875 ~~~~~~vLL~GppGtGKT~lA~alA~~~~~-~~i------------------------------------~i~~~el~~~ 917 (1134)
+..+.-+.|.||+|+|||||.++++..... ++. .+.-..+...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~ 92 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGN 92 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhc
Q ss_pred cccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccchhh
Q 001162 918 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAAL 997 (1134)
Q Consensus 918 ~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld~al 997 (1134)
+.|.+...+.++++. +.++++| | ......++...+. +++.|+.+|..++.+...+
T Consensus 93 ~yg~~~~~v~~~l~~-----G~illLD----L-----------D~~~~~~i~~~l~-----~~~tI~i~th~~~~l~~Rl 147 (219)
T 1s96_A 93 YYGTSREAIEQVLAT-----GVDVFLD----I-----------DWQGAQQIRQKMP-----HARSIFILPPSKIELDRRL 147 (219)
T ss_dssp EEEEEHHHHHHHHTT-----TCEEEEE----C-----------CHHHHHHHHHHCT-----TCEEEEEECSSHHHHHHHH
T ss_pred cCCCCHHHHHHHHhc-----CCeEEEE----E-----------CHHHHHHHHHHcc-----CCEEEEEECCCHHHHHHHH
Q ss_pred cCcC
Q 001162 998 LRPG 1001 (1134)
Q Consensus 998 lrpg 1001 (1134)
+.+|
T Consensus 148 ~~rG 151 (219)
T 1s96_A 148 RGRG 151 (219)
T ss_dssp HTTS
T ss_pred HHcC
No 401
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.99 E-value=0.014 Score=64.77 Aligned_cols=37 Identities=24% Similarity=0.401 Sum_probs=31.3
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCcccc
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL 915 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el~ 915 (1134)
.-+++.||+|+|||++|..+|+.++..++..+.-.++
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY 47 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSALIY 47 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTB
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEeccccccc
Confidence 3578899999999999999999999888777665554
No 402
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.99 E-value=0.014 Score=60.83 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=23.6
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhcc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEH 616 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~ 616 (1134)
.-|+|.|+|||||||+++.+++.++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 45899999999999999999999874
No 403
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.99 E-value=0.009 Score=60.80 Aligned_cols=25 Identities=40% Similarity=0.542 Sum_probs=19.1
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
..|+|+|+|||||||+++.+++.++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4599999999999999999999886
No 404
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.98 E-value=0.047 Score=56.49 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=15.3
Q ss_pred CceEEEcCCCCchhHHHH
Q 001162 879 SNVLLYGPPGCGKTHIVG 896 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~ 896 (1134)
..+++.+|+|+|||..+-
T Consensus 39 ~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 479999999999998643
No 405
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.97 E-value=0.016 Score=59.98 Aligned_cols=34 Identities=12% Similarity=0.012 Sum_probs=28.8
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc-CCcEEEEeC
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC-SLRFISVKG 911 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~-~~~~i~i~~ 911 (1134)
+.-+.|.|++|+||||+++.+++.+ |.+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 3458899999999999999999998 577877653
No 406
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.94 E-value=0.018 Score=58.64 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=30.6
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcc
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPE 913 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~e 913 (1134)
+.-+.|.|++|+||||+++.++..+ |.+++.+++..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 3457899999999999999999987 88888887543
No 407
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.94 E-value=0.017 Score=59.09 Aligned_cols=31 Identities=16% Similarity=0.054 Sum_probs=27.6
Q ss_pred ceEEEcCCCCchhHHHHHHHHHc---CCcEEEEe
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAAC---SLRFISVK 910 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~ 910 (1134)
-+.|.|++|+||||+++.+++.+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999988 88888765
No 408
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.93 E-value=0.014 Score=60.35 Aligned_cols=29 Identities=17% Similarity=0.438 Sum_probs=25.9
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCcEEE
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~~i~ 908 (1134)
.+.|.|++||||||+++.+|+.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 37899999999999999999999987654
No 409
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.92 E-value=0.015 Score=61.77 Aligned_cols=29 Identities=34% Similarity=0.568 Sum_probs=25.2
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCcEEE
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~~i~ 908 (1134)
.++|.|+||+||||+++.+++.++..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 37899999999999999999999875543
No 410
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.92 E-value=0.021 Score=65.04 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=21.7
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC 902 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~ 902 (1134)
..-+.|.||+|||||||.++||...
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3447899999999999999999865
No 411
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.92 E-value=0.041 Score=57.21 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=20.0
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC 902 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~ 902 (1134)
.++++.+|+|+|||.++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 369999999999999887777543
No 412
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.87 E-value=0.11 Score=59.49 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 587 ~~~p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
++...-+.|.||+|||||||+|.|+..+.
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 34445588999999999999999999754
No 413
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.83 E-value=0.031 Score=62.95 Aligned_cols=25 Identities=24% Similarity=0.495 Sum_probs=23.0
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.-|+|.||+|||||+|+..||+.++
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 4599999999999999999999876
No 414
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.83 E-value=0.016 Score=61.19 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=26.1
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCCcEEE
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~~~i~ 908 (1134)
..+.|.||+||||||+++.+++.+|.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 358899999999999999999999876653
No 415
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.80 E-value=0.05 Score=61.50 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=25.7
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHHhcc
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEH 616 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~l~~ 616 (1134)
|+.+..-++|.|+||+|||+++..+|..+..
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4555566999999999999999999987653
No 416
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.79 E-value=0.016 Score=60.39 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=24.1
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhcc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLEH 616 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~~ 616 (1134)
+.-|+|+|++||||||+++.+++.++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 456999999999999999999998864
No 417
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.78 E-value=0.028 Score=58.76 Aligned_cols=27 Identities=33% Similarity=0.589 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.+.-+.|.||+|+|||||++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345588999999999999999999885
No 418
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.76 E-value=0.011 Score=60.45 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=26.5
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcC---CcEEEEeCcc
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACS---LRFISVKGPE 913 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~---~~~i~i~~~e 913 (1134)
-++|.|+||+||||+++.|++.++ ..+..++..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 478999999999999999999875 3355554433
No 419
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.75 E-value=0.017 Score=60.26 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.+.-++|+||||+||||+++.+++.+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 345599999999999999999999874
No 420
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.72 E-value=0.018 Score=58.88 Aligned_cols=25 Identities=12% Similarity=0.361 Sum_probs=22.2
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.-+.|.||+|+|||||++.+++.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999999753
No 421
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.72 E-value=0.021 Score=58.45 Aligned_cols=23 Identities=43% Similarity=0.549 Sum_probs=21.6
Q ss_pred EEEEcCCCccHHHHHHHHHHHhc
Q 001162 593 ILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 593 vLL~GppGtGKTtLaralA~~l~ 615 (1134)
|.|+|++||||||+++.+++.+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999883
No 422
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.70 E-value=0.016 Score=59.89 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=22.5
Q ss_pred eEEEEcCCCccHHHHHHHHHHHhc
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.|.|.|++||||||+++.+++.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 389999999999999999999987
No 423
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.69 E-value=0.022 Score=58.59 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=26.6
Q ss_pred eEEEcCCCCchhHHHHHHHHHc---CCcEEEEeC
Q 001162 881 VLLYGPPGCGKTHIVGAAAAAC---SLRFISVKG 911 (1134)
Q Consensus 881 vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~ 911 (1134)
+.|.|++||||||+++.+++.+ |.+++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 6899999999999999999998 888876644
No 424
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.64 E-value=0.019 Score=59.97 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=24.1
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhcc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLEH 616 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~~ 616 (1134)
+.-|+|.|++||||||+++.+++.++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456999999999999999999998863
No 425
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.62 E-value=0.019 Score=59.69 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=27.1
Q ss_pred EEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEeccccc
Q 001162 593 ILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (1134)
Q Consensus 593 vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~ 633 (1134)
|.|+|++||||||+++.+++.++ +..++++.+.
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg--------~~vid~D~~~ 47 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYG--------AHVVNVDRIG 47 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC--------CEEEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhcC--------CEEEECcHHH
Confidence 88999999999999999999866 3456666554
No 426
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.61 E-value=0.052 Score=58.18 Aligned_cols=24 Identities=42% Similarity=0.425 Sum_probs=21.3
Q ss_pred eEEEEcCCCccHHHHHHHHHHHhc
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.++++||+|+|||.++.+++..++
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~ 133 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELS 133 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSC
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcC
Confidence 489999999999999998888763
No 427
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.60 E-value=0.022 Score=58.33 Aligned_cols=28 Identities=36% Similarity=0.510 Sum_probs=24.6
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhcc
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLEH 616 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~~ 616 (1134)
.+..++|.|++|+||||+++.+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4456999999999999999999999864
No 428
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.60 E-value=0.15 Score=58.09 Aligned_cols=29 Identities=31% Similarity=0.415 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 587 ~~~p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
+....-+.|.||+|||||||+|.|+..+.
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 34445588999999999999999999654
No 429
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.59 E-value=0.02 Score=59.44 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCccHHHHHHHHHHHh
Q 001162 588 PLPGHILIHGPPGSGKTSLAKAVAKSL 614 (1134)
Q Consensus 588 ~~p~~vLL~GppGtGKTtLaralA~~l 614 (1134)
.++.-+.|.||+|+||||+++.+++.+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 345568999999999999999999976
No 430
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.58 E-value=0.1 Score=62.19 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=44.6
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCccc-------------------chhcccc-cHHHHHHHHHHhh
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPEL-------------------LNKYIGA-SEQAVRDIFSKAT 934 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el-------------------~~~~~G~-se~~v~~lf~~A~ 934 (1134)
+..++|.|+||+||||++..+|..+ |.++..+++.-. +....+. ....+++.+..++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999765 666666655211 0001111 1222344555555
Q ss_pred hcCCeEEEEcCcccc
Q 001162 935 AAAPCLLFFDEFDSI 949 (1134)
Q Consensus 935 ~~~P~VLfiDEid~l 949 (1134)
.....++|||=...+
T Consensus 181 ~~~~DvvIIDTpG~~ 195 (504)
T 2j37_W 181 NENFEIIIVDTSGRH 195 (504)
T ss_dssp HTTCCEEEEEECCCC
T ss_pred HCCCcEEEEeCCCCc
Confidence 455679999976554
No 431
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.56 E-value=0.036 Score=62.75 Aligned_cols=25 Identities=28% Similarity=0.672 Sum_probs=23.0
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.+++|+|++|+||||+++++|+.++
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3599999999999999999999886
No 432
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.56 E-value=0.02 Score=59.51 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=24.9
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCcEEEE
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~~i~i 909 (1134)
.+.|.|++||||||+++.+|. +|.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 478999999999999999999 88666543
No 433
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.54 E-value=0.016 Score=60.95 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=22.2
Q ss_pred eEEEEcCCCccHHHHHHHHHHHhc
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.|+|.|+|||||||+++.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999999886
No 434
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.51 E-value=0.1 Score=55.38 Aligned_cols=55 Identities=15% Similarity=0.032 Sum_probs=29.3
Q ss_pred CCCCCCCChhHHHHHHHHHHhc-CCCchhHHhhCCCCCCCceEEEcCCCCchhHHHH
Q 001162 841 SGWDDVGGLTDIQNAIKEMIEL-PSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVG 896 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~-~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~ 896 (1134)
..|++++-.+.+.+.+.+.-.. +..+....-. .......+++.+|+|+|||..+-
T Consensus 25 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~-~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 25 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIG-LALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp SBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHH-HHHTTCCEEEECCTTSCHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHhCCCCEEEEeCCCCcHHHHHH
Confidence 3566666556666666543211 1111110000 01123579999999999998643
No 435
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.51 E-value=0.024 Score=61.42 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=28.3
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHcCCcEEEE
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~~~~~i~i 909 (1134)
...+.|.|++|+||||+++.+|..+|.+|+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 34699999999999999999999999887653
No 436
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.51 E-value=0.029 Score=59.14 Aligned_cols=25 Identities=48% Similarity=0.775 Sum_probs=22.9
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
..+.|.||+||||||+++.+++.++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999999876
No 437
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.49 E-value=0.025 Score=63.96 Aligned_cols=70 Identities=17% Similarity=0.303 Sum_probs=43.4
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc-cccc----cc---h--hhHHHHHHHHHHHHhhcCCeEE
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS-RLSL----EK---G--PIIRQALSNFISEALDHAPSIV 659 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s-~l~~----~~---~--~~~~~~l~~~f~~a~~~~PsIL 659 (1134)
...++|.||+|+||||++++++..+.... ..+.++.. .+.. .. . +. ...+..+..+....|.+|
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~----g~i~i~~~~e~~~~~~~~~i~~~~ggg--~~~r~~la~aL~~~p~il 244 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEE----RIISIEDTEEIVFKHHKNYTQLFFGGN--ITSADCLKSCLRMRPDRI 244 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTS----CEEEEESSCCCCCSSCSSEEEEECBTT--BCHHHHHHHHTTSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCC----cEEEECCeeccccccchhEEEEEeCCC--hhHHHHHHHHhhhCCCEE
Confidence 35699999999999999999999865322 22333321 1110 00 0 11 123344555666789999
Q ss_pred EEcccc
Q 001162 660 IFDNLD 665 (1134)
Q Consensus 660 ~IDEiD 665 (1134)
++||.-
T Consensus 245 ildE~~ 250 (330)
T 2pt7_A 245 ILGELR 250 (330)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 999973
No 438
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.48 E-value=0.068 Score=62.57 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=27.9
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCc
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGP 912 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~ 912 (1134)
+..++|+|++|+|||+++..+|..+ |..+..+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 4579999999999999999999866 4566666653
No 439
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.48 E-value=0.095 Score=63.07 Aligned_cols=112 Identities=18% Similarity=0.150 Sum_probs=61.0
Q ss_pred CCCCCceEEEcCCCCchhHHHHH--HHHHc--CCcEEEEeCcccch------hccccc----------------------
Q 001162 875 LRLRSNVLLYGPPGCGKTHIVGA--AAAAC--SLRFISVKGPELLN------KYIGAS---------------------- 922 (1134)
Q Consensus 875 ~~~~~~vLL~GppGtGKT~lA~a--lA~~~--~~~~i~i~~~el~~------~~~G~s---------------------- 922 (1134)
+.+...++|.||+|||||+|++. ++... +..-+.+++.+... ..+|-.
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~ 115 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQ 115 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCC
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchh
Confidence 34556799999999999999999 44433 34455665543100 001100
Q ss_pred --------HHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCc
Q 001162 923 --------EQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL 992 (1134)
Q Consensus 923 --------e~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ 992 (1134)
+............+.|.+|+|||+-.+.+.- +......+.+..++..+ .. .++.||.+|.+.+.
T Consensus 116 ~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~--~lD~~~~~~l~~ll~~l---~~-~g~tvl~itH~~~~ 187 (525)
T 1tf7_A 116 EVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY--DASSVVRRELFRLVARL---KQ-IGATTVMTTERIEE 187 (525)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT--CCHHHHHHHHHHHHHHH---HH-HTCEEEEEEECSSS
T ss_pred hhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhc--CCHHHHHHHHHHHHHHH---HH-CCCEEEEEecCCCC
Confidence 1122333444456788999999998876531 11111223334444444 33 24445556666554
No 440
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.46 E-value=0.024 Score=60.70 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=26.3
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCCcEEE
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~~~i~ 908 (1134)
..+.|.||+|||||++++.+|+.++..++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468899999999999999999999876643
No 441
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.46 E-value=0.028 Score=57.74 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=21.6
Q ss_pred EEEEcCCCccHHHHHHHHHHHhc
Q 001162 593 ILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 593 vLL~GppGtGKTtLaralA~~l~ 615 (1134)
|.|.|++||||||+++.+++.+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999983
No 442
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.43 E-value=0.14 Score=57.67 Aligned_cols=30 Identities=37% Similarity=0.451 Sum_probs=25.7
Q ss_pred CCCceEEEEcCCCccHHHHHHHHHHHhccC
Q 001162 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (1134)
Q Consensus 588 ~~p~~vLL~GppGtGKTtLaralA~~l~~~ 617 (1134)
.++.-+.|.||+|+||||+++.+|..+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 456669999999999999999999987643
No 443
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.40 E-value=0.03 Score=67.02 Aligned_cols=70 Identities=17% Similarity=0.323 Sum_probs=48.3
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHcC--CcEEEEeCcc-cch---hc--------ccccHHHHHHHHHHhhhcCCeEEEE
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPE-LLN---KY--------IGASEQAVRDIFSKATAAAPCLLFF 943 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~~--~~~i~i~~~e-l~~---~~--------~G~se~~v~~lf~~A~~~~P~VLfi 943 (1134)
+.++++.||+|+||||++++++..+. ...+.+.... +.- .+ ++.....+.+++..+-...|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 45699999999999999999998774 4566665543 211 00 0111223556677777788999999
Q ss_pred cCcc
Q 001162 944 DEFD 947 (1134)
Q Consensus 944 DEid 947 (1134)
+|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9974
No 444
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.38 E-value=0.027 Score=59.68 Aligned_cols=23 Identities=43% Similarity=0.674 Sum_probs=21.9
Q ss_pred EEEEcCCCccHHHHHHHHHHHhc
Q 001162 593 ILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 593 vLL~GppGtGKTtLaralA~~l~ 615 (1134)
|+|.|+|||||||+++.+++.++
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999886
No 445
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.38 E-value=0.022 Score=59.35 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=24.1
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCcEEE
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~~i~ 908 (1134)
-+.|.||+||||||+++.+|. +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 477999999999999999998 7877653
No 446
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.34 E-value=0.023 Score=61.10 Aligned_cols=30 Identities=27% Similarity=0.534 Sum_probs=26.1
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHcCCcEE
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFI 907 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~~~~~i 907 (1134)
+.-+.|.||+|+||||+++.|++.+|...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 356899999999999999999999987544
No 447
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.34 E-value=0.18 Score=57.51 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 587 ~~~p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
++...-+-|.||+|+|||||+|.++..+.
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 44455688999999999999999998653
No 448
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.32 E-value=0.098 Score=60.93 Aligned_cols=71 Identities=24% Similarity=0.405 Sum_probs=41.0
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc-ccc--c----cchhhHHHHHHHHHHHHhhcCCeEEEEcc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS-RLS--L----EKGPIIRQALSNFISEALDHAPSIVIFDN 663 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s-~l~--~----~~~~~~~~~l~~~f~~a~~~~PsIL~IDE 663 (1134)
+.++|.||+|+||||++++++..+..... ++..+.-. .+. + .......-.+...+..+....|.++++.|
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g---~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgE 244 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSER---NILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGE 244 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTS---CEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCC---EEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcC
Confidence 45899999999999999999998864322 22222110 110 0 00011111133344444456799999998
Q ss_pred c
Q 001162 664 L 664 (1134)
Q Consensus 664 i 664 (1134)
+
T Consensus 245 i 245 (418)
T 1p9r_A 245 I 245 (418)
T ss_dssp C
T ss_pred c
Confidence 7
No 449
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.31 E-value=0.02 Score=59.50 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=21.2
Q ss_pred eEEEEcCCCccHHHHHHHHHHHhc
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.|.|+|++||||||+++.+++ ++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC
Confidence 489999999999999999999 75
No 450
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.31 E-value=0.21 Score=57.01 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 587 ~~~p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
++...-+.|.||+|||||||+|.++..+.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 34445588999999999999999998754
No 451
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.30 E-value=0.025 Score=58.56 Aligned_cols=25 Identities=44% Similarity=0.753 Sum_probs=22.2
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHh
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSL 614 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l 614 (1134)
+.-+.|.||+|+|||||++.++..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4458899999999999999999975
No 452
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.30 E-value=0.16 Score=59.32 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=48.8
Q ss_pred CCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccchh--------------------hHHHHHHHH
Q 001162 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGP--------------------IIRQALSNF 647 (1134)
Q Consensus 588 ~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~~~--------------------~~~~~l~~~ 647 (1134)
.+|+.++++|++|+||||++-.+|..+....+ ..+..++|......... .....+...
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G--~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~ 175 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHK--KKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAA 175 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSC--CCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcC--CeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHH
Confidence 34677999999999999999999998875412 45666777653322111 112223455
Q ss_pred HHHHhhcCCeEEEEccc
Q 001162 648 ISEALDHAPSIVIFDNL 664 (1134)
Q Consensus 648 f~~a~~~~PsIL~IDEi 664 (1134)
+..+.+....++|||=.
T Consensus 176 l~~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 176 LKEAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHHHTTCSEEEEECC
T ss_pred HHHHHhCCCCEEEEECC
Confidence 66665555679999864
No 453
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.30 E-value=0.028 Score=64.00 Aligned_cols=109 Identities=25% Similarity=0.270 Sum_probs=0.0
Q ss_pred CCCCCceEEEcCCCCchhHHHHHHHHHc----CCcEE-------------------------------------------
Q 001162 875 LRLRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFI------------------------------------------- 907 (1134)
Q Consensus 875 ~~~~~~vLL~GppGtGKT~lA~alA~~~----~~~~i------------------------------------------- 907 (1134)
+....-+.|.||+|||||||.++||... |.-.+
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~ 117 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRV 117 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTC
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC
Q ss_pred --------------EEeCcccchhccccc--HHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHhhh
Q 001162 908 --------------SVKGPELLNKYIGAS--EQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1134)
Q Consensus 908 --------------~i~~~el~~~~~G~s--e~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ 971 (1134)
.+...++.+++.++- .+.-|-.+.+|-...|.+|++|| --.+.......++...
T Consensus 118 ~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE----------P~s~LD~~~r~~l~~~ 187 (355)
T 1z47_A 118 PKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDE----------PFAAIDTQIRRELRTF 187 (355)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES----------TTCCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC----------CcccCCHHHHHHHHHH
Q ss_pred cccccccccEEEEEecCCCCcc
Q 001162 972 LDGVEVLTGVFVFAATSRPDLL 993 (1134)
Q Consensus 972 ld~~~~~~~v~vIatTn~p~~l 993 (1134)
|..+....+..+|.+|...+.+
T Consensus 188 l~~l~~~~g~tvi~vTHd~~~a 209 (355)
T 1z47_A 188 VRQVHDEMGVTSVFVTHDQEEA 209 (355)
T ss_dssp HHHHHHHHTCEEEEECSCHHHH
T ss_pred HHHHHHhcCCEEEEECCCHHHH
No 454
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.28 E-value=0.027 Score=58.39 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=26.7
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCcEEEE
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISV 909 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~~i~i 909 (1134)
.+.|.|++|+|||++++.+|..+|.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 578999999999999999999999877653
No 455
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.22 E-value=0.023 Score=59.62 Aligned_cols=26 Identities=38% Similarity=0.537 Sum_probs=22.8
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
+.-+.|.||+|+||||+++.+++.+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44589999999999999999998764
No 456
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.22 E-value=0.14 Score=56.72 Aligned_cols=72 Identities=25% Similarity=0.198 Sum_probs=45.1
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccch-------h---------c---ccccH-HHHHHHHHHhh
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN-------K---------Y---IGASE-QAVRDIFSKAT 934 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~~-------~---------~---~G~se-~~v~~lf~~A~ 934 (1134)
+.-+.+.|++|+|||+++..+|..+ +..+..++..-... . + .+... ...+..+..+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~ 177 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR 177 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3457788999999999999999765 55655555421100 0 0 01112 22356666666
Q ss_pred hcCCeEEEEcCcccc
Q 001162 935 AAAPCLLFFDEFDSI 949 (1134)
Q Consensus 935 ~~~P~VLfiDEid~l 949 (1134)
...+.+++||+.-.+
T Consensus 178 ~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 178 LEARDLILVDTAGRL 192 (295)
T ss_dssp HHTCCEEEEECCCCS
T ss_pred hCCCCEEEEeCCCCc
Confidence 567889999987443
No 457
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.22 E-value=0.024 Score=58.95 Aligned_cols=26 Identities=31% Similarity=0.682 Sum_probs=22.4
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
+..+.|.||+|+|||||++.+++.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35589999999999999999999763
No 458
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.19 E-value=0.034 Score=57.72 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=25.8
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCC--cEEEE
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSL--RFISV 909 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~--~~i~i 909 (1134)
.-++|.|+||+||||+|+.|++.++. .++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 35889999999999999999999876 35443
No 459
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.17 E-value=0.033 Score=57.99 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=0.0
Q ss_pred chhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHHc---------------------CCcEEEEeCcccchh-------
Q 001162 866 FPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---------------------SLRFISVKGPELLNK------- 917 (1134)
Q Consensus 866 ~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~~---------------------~~~~i~i~~~el~~~------- 917 (1134)
+..-..+.+...+.-+.|.||+|+|||+|+++|+... |.++..++..++...
T Consensus 7 ~~~~~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fl 86 (197)
T 3ney_A 7 HSSGRENLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFL 86 (197)
T ss_dssp ---------CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEE
T ss_pred cccccccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhh
Q ss_pred --------cccccHHHHHHHHHHhhhcCCeEEEEc
Q 001162 918 --------YIGASEQAVRDIFSKATAAAPCLLFFD 944 (1134)
Q Consensus 918 --------~~G~se~~v~~lf~~A~~~~P~VLfiD 944 (1134)
|.|.+...+.++++..+.. |+-+|
T Consensus 87 e~~~~~~n~YGt~~~~v~~~l~~G~~v---ildid 118 (197)
T 3ney_A 87 EFGSYQGNMFGTKFETVHQIHKQNKIA---ILDIE 118 (197)
T ss_dssp EEEEETTEEEEEEHHHHHHHHHTTCEE---EEECC
T ss_pred hhhhhhceecccchhhHHHHHhcCCeE---EEEEC
No 460
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.16 E-value=0.14 Score=54.59 Aligned_cols=21 Identities=43% Similarity=0.649 Sum_probs=17.0
Q ss_pred CceEEEcCCCCchhHHHHHHH
Q 001162 879 SNVLLYGPPGCGKTHIVGAAA 899 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA 899 (1134)
..+++.||+|||||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 469999999999998665544
No 461
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.15 E-value=0.025 Score=58.49 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.7
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHh
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSL 614 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l 614 (1134)
+..|.|.|++||||||+++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3559999999999999999999987
No 462
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.13 E-value=0.047 Score=57.13 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=29.4
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHcC----CcEEEEeCccc
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAACS----LRFISVKGPEL 914 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~~----~~~i~i~~~el 914 (1134)
+.-++|.|++|+||||+++.++..++ .+++.+++..+
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 34588999999999999999998764 56777775443
No 463
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.12 E-value=0.072 Score=68.01 Aligned_cols=43 Identities=28% Similarity=0.180 Sum_probs=33.2
Q ss_pred ccchhhHHHHHHHHHHhcCCCchhhhhhcCCCCCceEEEEcCCCccHHHHHHHHHHH
Q 001162 557 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKS 613 (1134)
Q Consensus 557 ~G~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~p~~vLL~GppGtGKTtLaralA~~ 613 (1134)
+|++..++++.+.+... ...+-+.|+|+.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~--------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL--------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC--------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc--------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 67888888887766421 11355899999999999999999863
No 464
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.11 E-value=0.046 Score=56.61 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=41.3
Q ss_pred ceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCc--------ccchhccccc-----HHHHHHHHHHhhhcCCeEEEE
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGP--------ELLNKYIGAS-----EQAVRDIFSKATAAAPCLLFF 943 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~--------el~~~~~G~s-----e~~v~~lf~~A~~~~P~VLfi 943 (1134)
-.+++||.|+|||+.+-.+|..+ |.+++.++.. .+.+ ..|.. -....++++.+.. ...+|+|
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s-~~g~~~~a~~~~~~~~i~~~~~~-~~dvViI 87 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVS-HMGEKEQAVAIKNSREILKYFEE-DTEVIAI 87 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEEC-TTSCEEECEEESSSTHHHHHCCT-TCSEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHh-hcCCceeeEeeCCHHHHHHHHhc-cCCEEEE
Confidence 46788999999998887777655 6666665421 1111 11211 0111356665542 3579999
Q ss_pred cCcccc
Q 001162 944 DEFDSI 949 (1134)
Q Consensus 944 DEid~l 949 (1134)
||+.-+
T Consensus 88 DEaqfl 93 (191)
T 1xx6_A 88 DEVQFF 93 (191)
T ss_dssp CSGGGS
T ss_pred ECCCCC
Confidence 999875
No 465
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.11 E-value=0.014 Score=60.98 Aligned_cols=28 Identities=11% Similarity=0.018 Sum_probs=24.0
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHcCCc
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAACSLR 905 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~~~~ 905 (1134)
+.-++|.|++||||||+++.+++.++..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4468999999999999999999987543
No 466
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.11 E-value=0.09 Score=59.21 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=22.5
Q ss_pred CCCceEEEcCCCCchhHHHHHHHHHc
Q 001162 877 LRSNVLLYGPPGCGKTHIVGAAAAAC 902 (1134)
Q Consensus 877 ~~~~vLL~GppGtGKT~lA~alA~~~ 902 (1134)
++.-+.|.||+|+||||+++.+|..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999866
No 467
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.11 E-value=0.18 Score=52.81 Aligned_cols=60 Identities=25% Similarity=0.197 Sum_probs=33.8
Q ss_pred CCCCCCCChhHHHHHHHHHHhc-CCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHH
Q 001162 841 SGWDDVGGLTDIQNAIKEMIEL-PSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAA 901 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~-~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~ 901 (1134)
..|++++-.+.+.+.+.+.-.. +..++...-.. ......+++.+|+|+|||..+-..+-.
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQ-AILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHH-HHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCCEEEECCCCCchhhhhhHHHHH
Confidence 4577776666777777653221 22221111100 011356999999999999876555443
No 468
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.10 E-value=0.031 Score=58.00 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=25.6
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCcEEE
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLRFIS 908 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~~i~ 908 (1134)
-+.|.|++||||||+++.+++.+|.+++.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 47799999999999999999998877654
No 469
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.07 E-value=0.091 Score=54.35 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=41.2
Q ss_pred ceEEEcCCCCchh-HHHHHHHHHc--CCcEEEEeCcccchhcccccH------------HHHHHHHHHhhhcCCeEEEEc
Q 001162 880 NVLLYGPPGCGKT-HIVGAAAAAC--SLRFISVKGPELLNKYIGASE------------QAVRDIFSKATAAAPCLLFFD 944 (1134)
Q Consensus 880 ~vLL~GppGtGKT-~lA~alA~~~--~~~~i~i~~~el~~~~~G~se------------~~v~~lf~~A~~~~P~VLfiD 944 (1134)
=.++|||.|+||| .|.+++.+.. +.+++.+++. +-.+|...-. ....++++..+ ...+|+||
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~-~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIlID 98 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA-KDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIGID 98 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET-TCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc-cCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEEEE
Confidence 3678999999999 8889887644 6777777743 1111110000 11123333332 34799999
Q ss_pred Ccccc
Q 001162 945 EFDSI 949 (1134)
Q Consensus 945 Eid~l 949 (1134)
|+.-+
T Consensus 99 EaQFf 103 (195)
T 1w4r_A 99 EGQFF 103 (195)
T ss_dssp SGGGC
T ss_pred chhhh
Confidence 99876
No 470
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.06 E-value=0.031 Score=58.62 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=24.4
Q ss_pred CCCceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 588 PLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 588 ~~p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
..+..++|.|++|+||||+++.+++.+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3445689999999999999999999875
No 471
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.06 E-value=0.039 Score=59.01 Aligned_cols=26 Identities=31% Similarity=0.677 Sum_probs=23.7
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
|..+.|.||+||||||+++.+++.++
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34699999999999999999999986
No 472
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.05 E-value=0.13 Score=63.10 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=21.9
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
+.++++|+||||||+++..+...+.
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4599999999999999998887764
No 473
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.04 E-value=0.088 Score=59.30 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=23.3
Q ss_pred CceEEEcCCCCchhHHHHHHHHHc-----CCcEEEEeC
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKG 911 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~-----~~~~i~i~~ 911 (1134)
.++++.+|+|+|||..+-..+-.. +...+.+.+
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P 82 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTP 82 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECS
T ss_pred CCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcC
Confidence 579999999999998765544433 445555554
No 474
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.04 E-value=0.17 Score=64.49 Aligned_cols=27 Identities=33% Similarity=0.343 Sum_probs=22.3
Q ss_pred CCCCceEEEEcCCCccHHHHHHHHHHH
Q 001162 587 LPLPGHILIHGPPGSGKTSLAKAVAKS 613 (1134)
Q Consensus 587 ~~~p~~vLL~GppGtGKTtLaralA~~ 613 (1134)
.....-++|+||.|+||||+.|.++..
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 344556999999999999999998753
No 475
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.04 E-value=0.033 Score=55.83 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=24.8
Q ss_pred CCCCceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 587 ~~~p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
+++..-+.|.||.|+|||||+|.+++.+.
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 44455689999999999999999999873
No 476
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.04 E-value=0.14 Score=60.26 Aligned_cols=38 Identities=21% Similarity=0.072 Sum_probs=30.0
Q ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeC
Q 001162 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKG 911 (1134)
Q Consensus 874 ~~~~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~ 911 (1134)
|+.++.-+++.|+||+|||++|-.+|... |.+++.++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 56667779999999999999998887654 567776654
No 477
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.03 E-value=0.026 Score=61.15 Aligned_cols=25 Identities=40% Similarity=0.578 Sum_probs=23.4
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
..+.|.|++|+||||+++.+++.++
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4599999999999999999999987
No 478
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.02 E-value=0.024 Score=63.76 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=30.3
Q ss_pred ceEEEcCCCCchhHHHHHHHHHcCCcEEEEeCccc
Q 001162 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPEL 914 (1134)
Q Consensus 880 ~vLL~GppGtGKT~lA~alA~~~~~~~i~i~~~el 914 (1134)
-++|.||+|+|||+|+..||+.++..+|..+.-.+
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qv 76 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQV 76 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEccccccc
Confidence 58899999999999999999999988877665543
No 479
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.01 E-value=0.047 Score=63.70 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=24.0
Q ss_pred CCCceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 588 PLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 588 ~~p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
..+.-|+|+|+||+||||+++.+++.++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3455699999999999999999998765
No 480
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.01 E-value=0.079 Score=54.81 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=21.6
Q ss_pred eEEEEcCCCccHH-HHHHHHHHHhccC
Q 001162 592 HILIHGPPGSGKT-SLAKAVAKSLEHH 617 (1134)
Q Consensus 592 ~vLL~GppGtGKT-tLaralA~~l~~~ 617 (1134)
=.++|||.|+||| .|++++.+....+
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~ 48 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQ 48 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 3789999999999 8889988876543
No 481
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.00 E-value=0.13 Score=65.75 Aligned_cols=43 Identities=21% Similarity=0.165 Sum_probs=31.6
Q ss_pred CChhHHHHHHHHHHhcCCCchhHHhhCCCCCCCceEEEcCCCCchhHHHHHHHHH
Q 001162 847 GGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAA 901 (1134)
Q Consensus 847 ~gl~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~alA~~ 901 (1134)
+|-+...+.|.+.+... ...+-+.++|++|.|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 67777777777765421 11345889999999999999999863
No 482
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.99 E-value=0.16 Score=60.43 Aligned_cols=75 Identities=17% Similarity=0.171 Sum_probs=44.8
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecccccccc--------------------hhhHHHHHHHHH
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK--------------------GPIIRQALSNFI 648 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s~l~~~~--------------------~~~~~~~l~~~f 648 (1134)
.+..|+|+|++|+||||++..+|..+.... ..+..++++...... .......+.+.+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G---~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al 176 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKG---WKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGV 176 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHH
Confidence 456799999999999999999998886432 234445553221100 011112223445
Q ss_pred HHHhhcCCeEEEEcccch
Q 001162 649 SEALDHAPSIVIFDNLDS 666 (1134)
Q Consensus 649 ~~a~~~~PsIL~IDEiD~ 666 (1134)
..+.+....++|||-.-.
T Consensus 177 ~~~~~~~~DvvIIDTpG~ 194 (504)
T 2j37_W 177 EKFKNENFEIIIVDTSGR 194 (504)
T ss_dssp HHHHHTTCCEEEEEECCC
T ss_pred HHHHHCCCcEEEEeCCCC
Confidence 555555667999987643
No 483
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.98 E-value=0.15 Score=59.65 Aligned_cols=72 Identities=21% Similarity=0.214 Sum_probs=47.1
Q ss_pred CCCceEEEcCCCCchhHHHHHHHHHc----CCcEEEEeCcccchh----------------cc---ccc-HHHHHHHHHH
Q 001162 877 LRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGPELLNK----------------YI---GAS-EQAVRDIFSK 932 (1134)
Q Consensus 877 ~~~~vLL~GppGtGKT~lA~alA~~~----~~~~i~i~~~el~~~----------------~~---G~s-e~~v~~lf~~ 932 (1134)
.+..+++.|++|+||||++..+|..+ |.++..+++.-.... +. +.. ...++..+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45678899999999999998888654 677777776532110 00 111 2333666777
Q ss_pred hhhcCCeEEEEcCccc
Q 001162 933 ATAAAPCLLFFDEFDS 948 (1134)
Q Consensus 933 A~~~~P~VLfiDEid~ 948 (1134)
++.....+++||=...
T Consensus 179 ~~~~~~D~VIIDTpG~ 194 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGR 194 (433)
T ss_dssp HHHTTCSEEEEECCCC
T ss_pred HHhCCCCEEEEECCCc
Confidence 7655668999986543
No 484
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.96 E-value=0.04 Score=59.48 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=31.7
Q ss_pred CceEEEEcCCCccHHHHHHHHHHHhccCC--ceeeEEEEEecccccc
Q 001162 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHK--DLVAHIVFVCCSRLSL 634 (1134)
Q Consensus 590 p~~vLL~GppGtGKTtLaralA~~l~~~~--~~~~~~~~v~~s~l~~ 634 (1134)
+.-|.|.|++||||||+++.+++.++... .....+..+++..+..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 34599999999999999999999886320 0012345677777653
No 485
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.94 E-value=0.042 Score=59.34 Aligned_cols=38 Identities=8% Similarity=0.111 Sum_probs=31.2
Q ss_pred CceEEEcCCCCchhHHHHHHHHHcCCc--------EEEEeCcccch
Q 001162 879 SNVLLYGPPGCGKTHIVGAAAAACSLR--------FISVKGPELLN 916 (1134)
Q Consensus 879 ~~vLL~GppGtGKT~lA~alA~~~~~~--------~i~i~~~el~~ 916 (1134)
.-+.|.|++|+||||+|+.|+..++.+ +..++..+++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 358899999999999999999999876 44677776653
No 486
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.92 E-value=0.038 Score=63.05 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=21.6
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC 902 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~ 902 (1134)
..-+-|.||+|+|||||.++++...
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3457899999999999999999765
No 487
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.91 E-value=0.059 Score=61.75 Aligned_cols=107 Identities=21% Similarity=0.228 Sum_probs=0.0
Q ss_pred CCCCCceEEEcCCCCchhHHHHHHHHHc--CCcEEEEeCccc--------------------------------------
Q 001162 875 LRLRSNVLLYGPPGCGKTHIVGAAAAAC--SLRFISVKGPEL-------------------------------------- 914 (1134)
Q Consensus 875 ~~~~~~vLL~GppGtGKT~lA~alA~~~--~~~~i~i~~~el-------------------------------------- 914 (1134)
+....-+.|.||+|||||||.+++|... ..=-+.+++.++
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~ 113 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKF 113 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCC
Q ss_pred -------------------------chhcccccHHHHHHHHHHhhhcCCeEEEEcCcccccCCCCCCCCcchhhHHHhHh
Q 001162 915 -------------------------LNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 969 (1134)
Q Consensus 915 -------------------------~~~~~G~se~~v~~lf~~A~~~~P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL 969 (1134)
...+.|...+++ .+.+|-...|.+|++||--+-. ......++.
T Consensus 114 ~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRv--alArAL~~~P~lLLLDEP~s~L----------D~~~r~~l~ 181 (372)
T 1v43_A 114 PKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRV--AVARAIVVEPDVLLMDEPLSNL----------DAKLRVAMR 181 (372)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHH--HHHHHHTTCCSEEEEESTTTTS----------CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH--HHHHHHhcCCCEEEEcCCCccC----------CHHHHHHHH
Q ss_pred hhcccccccccEEEEEecCCCCcc
Q 001162 970 TELDGVEVLTGVFVFAATSRPDLL 993 (1134)
Q Consensus 970 ~~ld~~~~~~~v~vIatTn~p~~l 993 (1134)
..|..+....+..+|.+|...+.+
T Consensus 182 ~~l~~l~~~~g~tvi~vTHd~~~a 205 (372)
T 1v43_A 182 AEIKKLQQKLKVTTIYVTHDQVEA 205 (372)
T ss_dssp HHHHHHHHHHTCEEEEEESCHHHH
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHH
No 488
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.90 E-value=0.031 Score=59.14 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=23.1
Q ss_pred CCCCceEEEEcCCCccHHHHHHHHHHHh
Q 001162 587 LPLPGHILIHGPPGSGKTSLAKAVAKSL 614 (1134)
Q Consensus 587 ~~~p~~vLL~GppGtGKTtLaralA~~l 614 (1134)
++++.-+.|.||+|+|||||++.++..+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4445568999999999999999999976
No 489
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.87 E-value=0.1 Score=61.69 Aligned_cols=31 Identities=32% Similarity=0.404 Sum_probs=26.1
Q ss_pred CCCCceEEEEcCCCccHHHHHHHHHHHhccC
Q 001162 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (1134)
Q Consensus 587 ~~~p~~vLL~GppGtGKTtLaralA~~l~~~ 617 (1134)
...+.-++|.|++|+||||+++.|+..+...
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence 4556668999999999999999999987543
No 490
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.86 E-value=0.038 Score=57.57 Aligned_cols=27 Identities=44% Similarity=0.416 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCccHHHHHHHHHHHh
Q 001162 588 PLPGHILIHGPPGSGKTSLAKAVAKSL 614 (1134)
Q Consensus 588 ~~p~~vLL~GppGtGKTtLaralA~~l 614 (1134)
.++.-+.|.|++|+||||+++.+++.+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 334558899999999999999999875
No 491
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.85 E-value=0.061 Score=59.54 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.+.-|.|.|++|+||||+++.+++.+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345589999999999999999999886
No 492
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.85 E-value=0.029 Score=57.55 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=20.5
Q ss_pred eEEEEcCCCccHHHHHHHHHHHh
Q 001162 592 HILIHGPPGSGKTSLAKAVAKSL 614 (1134)
Q Consensus 592 ~vLL~GppGtGKTtLaralA~~l 614 (1134)
-+.|.||+|+||||+++.+++..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 47899999999999999999854
No 493
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.85 E-value=0.032 Score=57.52 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=21.9
Q ss_pred ceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 591 ~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
+.|+|+||+|+|||||++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3489999999999999999988753
No 494
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.84 E-value=0.08 Score=67.45 Aligned_cols=108 Identities=14% Similarity=0.109 Sum_probs=53.5
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc-----CC----cEEEE----------eCcccchhcccccHHHHHHHHHHh-hhcC
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC-----SL----RFISV----------KGPELLNKYIGASEQAVRDIFSKA-TAAA 937 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~-----~~----~~i~i----------~~~el~~~~~G~se~~v~~lf~~A-~~~~ 937 (1134)
+.-++|.||.|+||||+.+.+|... |. .-..+ ...+.+...........+++...+ ....
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~ 752 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATS 752 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCT
T ss_pred CeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccC
Confidence 4458899999999999999987421 21 11111 111111111111111222222222 2467
Q ss_pred CeEEEEcCcccccCCCCCCCCcchhhHHHhHhhhcccccccccEEEEEecCCCCccc
Q 001162 938 PCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLD 994 (1134)
Q Consensus 938 P~VLfiDEid~l~~~r~~~~~~~~~rv~~~lL~~ld~~~~~~~v~vIatTn~p~~ld 994 (1134)
|++|++||..+-. + ......+...++..+ ....+..+|.+|...+...
T Consensus 753 p~LlLLDEP~~Gl-----D-~~~~~~i~~~il~~L---~~~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 753 QSLVILDELGRGT-----S-THDGIAIAYATLEYF---IRDVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp TCEEEEESTTTTS-----C-HHHHHHHHHHHHHHH---HHTTCCEEEEECSCGGGGG
T ss_pred CCEEEEeCCCCCC-----C-HHHHHHHHHHHHHHH---HHhcCCeEEEEeCcHHHHH
Confidence 8999999986421 1 111223333455444 2223566777888876654
No 495
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.82 E-value=0.056 Score=61.72 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.6
Q ss_pred CCceEEEcCCCCchhHHHHHHHHHc
Q 001162 878 RSNVLLYGPPGCGKTHIVGAAAAAC 902 (1134)
Q Consensus 878 ~~~vLL~GppGtGKT~lA~alA~~~ 902 (1134)
..-+.|.||+|||||||.+++|...
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3457799999999999999999865
No 496
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.79 E-value=0.13 Score=60.79 Aligned_cols=73 Identities=22% Similarity=0.245 Sum_probs=44.5
Q ss_pred CCCceEEEcCCCCchhHHHHHHHHHc---CCcEEEEeCcccc-------hh--------ccc-----ccHHHHHHHHHHh
Q 001162 877 LRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL-------NK--------YIG-----ASEQAVRDIFSKA 933 (1134)
Q Consensus 877 ~~~~vLL~GppGtGKT~lA~alA~~~---~~~~i~i~~~el~-------~~--------~~G-----~se~~v~~lf~~A 933 (1134)
.+.-++|.||+|+||||+++.||..+ +..+....+..+. .. |+. .....+.+.+..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 44558899999999999999999865 3444433332111 00 111 1223455555555
Q ss_pred hhcCCeEEEEcCcccc
Q 001162 934 TAAAPCLLFFDEFDSI 949 (1134)
Q Consensus 934 ~~~~P~VLfiDEid~l 949 (1134)
......+++||=+..+
T Consensus 372 ~~~~~DvVLIDTaGrl 387 (503)
T 2yhs_A 372 KARNIDVLIADTAGRL 387 (503)
T ss_dssp HHTTCSEEEECCCCSC
T ss_pred HhcCCCEEEEeCCCcc
Confidence 5555678888877655
No 497
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.78 E-value=0.14 Score=57.46 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=30.5
Q ss_pred CCCCceEEEEcCCCccHHHHHHHHHHHhccCCceeeEEEEEecc
Q 001162 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1134)
Q Consensus 587 ~~~p~~vLL~GppGtGKTtLaralA~~l~~~~~~~~~~~~v~~s 630 (1134)
..++.-++|+|++|+||||++..+|..+.... ..+..++++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g---~kVllid~D 142 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELG---YKVLIAAAD 142 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTT---CCEEEEECC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeCC
Confidence 45566799999999999999999999886433 234445543
No 498
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=93.77 E-value=0.18 Score=52.76 Aligned_cols=54 Identities=20% Similarity=0.165 Sum_probs=29.0
Q ss_pred CCCCCCCChhHHHHHHHHHHhc-CCCchhHHhhCCCCCCCceEEEcCCCCchhHHH
Q 001162 841 SGWDDVGGLTDIQNAIKEMIEL-PSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIV 895 (1134)
Q Consensus 841 ~~~~~i~gl~~~k~~l~~~i~~-~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 895 (1134)
..|++++-.+.+.+.+.+.-.. +..++...-. .......+++.+|+|+|||..+
T Consensus 14 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~~~~~~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIM-PIIEGHDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSSHHHHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHH-HHhcCCCEEEECCCCCcHHHHH
Confidence 4566666556666666554211 1111111000 0112357999999999999863
No 499
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.74 E-value=0.063 Score=55.79 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCccHHHHHHHHHHHhc
Q 001162 589 LPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1134)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaralA~~l~ 615 (1134)
.+.-+.|.|++|+||||+++.++..+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345589999999999999999999874
No 500
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.73 E-value=0.039 Score=61.45 Aligned_cols=29 Identities=28% Similarity=0.559 Sum_probs=25.8
Q ss_pred CCCCCceEEEEcCCCccHHHHHHHHHHHh
Q 001162 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSL 614 (1134)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaralA~~l 614 (1134)
.+++...+.|+||+|+|||||++.|++.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 35666779999999999999999999987
Done!