Query 001163
Match_columns 1134
No_of_seqs 869 out of 4420
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 17:33:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 1.6E-69 3.5E-74 540.9 35.5 491 5-673 17-514 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 5.7E-63 1.2E-67 477.9 32.6 486 5-670 7-507 (508)
3 KOG0319 WD40-repeat-containing 100.0 2.2E-57 4.8E-62 487.6 48.1 577 362-1052 25-621 (775)
4 KOG0319 WD40-repeat-containing 100.0 4.1E-54 9E-59 462.5 45.4 578 328-1008 25-621 (775)
5 KOG0291 WD40-repeat-containing 100.0 4.7E-51 1E-55 438.6 66.0 607 328-1103 20-710 (893)
6 KOG0318 WD40 repeat stress pro 100.0 3.4E-50 7.3E-55 415.4 62.2 569 361-1102 23-602 (603)
7 KOG0318 WD40 repeat stress pro 100.0 2.1E-48 4.6E-53 402.1 60.6 534 354-1050 57-602 (603)
8 KOG0291 WD40-repeat-containing 100.0 4.8E-49 1E-53 423.2 57.1 582 323-1056 56-715 (893)
9 KOG0306 WD40-repeat-containing 100.0 9.5E-49 2.1E-53 420.7 49.7 573 366-1103 32-665 (888)
10 KOG0306 WD40-repeat-containing 100.0 4.3E-48 9.4E-53 415.6 48.9 534 355-1054 64-668 (888)
11 KOG0271 Notchless-like WD40 re 100.0 9.1E-50 2E-54 395.7 29.9 367 414-955 111-479 (480)
12 KOG0271 Notchless-like WD40 re 100.0 1.2E-49 2.6E-54 394.9 29.5 325 354-804 113-479 (480)
13 KOG1408 WD40 repeat protein [F 100.0 3.8E-43 8.3E-48 373.8 41.5 621 361-1103 42-714 (1080)
14 KOG1539 WD repeat protein [Gen 100.0 9.8E-38 2.1E-42 340.5 55.5 584 362-1100 39-646 (910)
15 KOG1408 WD40 repeat protein [F 100.0 4.8E-39 1E-43 342.7 42.2 556 355-1052 77-715 (1080)
16 KOG0272 U4/U6 small nuclear ri 100.0 4.7E-41 1E-45 339.2 22.5 284 353-670 172-458 (459)
17 KOG0273 Beta-transducin family 100.0 1.9E-39 4.1E-44 331.8 31.6 312 348-681 170-490 (524)
18 KOG1063 RNA polymerase II elon 100.0 3.1E-37 6.7E-42 330.0 49.7 587 347-1050 44-763 (764)
19 KOG0272 U4/U6 small nuclear ri 100.0 5.8E-40 1.3E-44 331.3 24.2 286 415-804 172-458 (459)
20 KOG0279 G protein beta subunit 100.0 1.2E-37 2.5E-42 298.2 32.5 296 350-672 8-313 (315)
21 KOG0276 Vesicle coat complex C 100.0 2.9E-36 6.2E-41 318.0 43.3 475 355-1006 12-490 (794)
22 KOG1539 WD repeat protein [Gen 100.0 8.5E-36 1.8E-40 325.5 48.1 564 355-1006 75-648 (910)
23 KOG0286 G-protein beta subunit 100.0 5.8E-37 1.3E-41 294.9 34.1 291 350-670 48-343 (343)
24 KOG1063 RNA polymerase II elon 100.0 1.9E-35 4.1E-40 316.4 49.2 591 362-1102 20-763 (764)
25 KOG0263 Transcription initiati 100.0 3.4E-37 7.5E-42 337.0 33.8 276 342-630 363-651 (707)
26 KOG0276 Vesicle coat complex C 100.0 2.5E-35 5.5E-40 310.8 44.0 459 414-1042 9-483 (794)
27 KOG0292 Vesicle coat complex C 100.0 4.7E-35 1E-39 320.1 47.3 500 355-1048 8-516 (1202)
28 KOG0286 G-protein beta subunit 100.0 2.8E-36 6.2E-41 290.2 33.0 287 413-804 50-343 (343)
29 KOG0279 G protein beta subunit 100.0 1.2E-35 2.7E-40 284.3 31.6 296 773-1102 12-313 (315)
30 KOG2106 Uncharacterized conser 100.0 2.2E-33 4.8E-38 289.1 48.6 539 361-1101 70-625 (626)
31 KOG0315 G-protein beta subunit 100.0 1.8E-35 3.9E-40 277.9 30.1 287 367-687 8-302 (311)
32 KOG0273 Beta-transducin family 100.0 6.1E-35 1.3E-39 298.9 32.4 316 313-672 176-523 (524)
33 KOG0295 WD40 repeat-containing 100.0 1.8E-35 4E-40 293.2 27.1 290 348-670 100-404 (406)
34 KOG2106 Uncharacterized conser 100.0 6.6E-33 1.4E-37 285.6 45.5 481 312-956 101-625 (626)
35 KOG0315 G-protein beta subunit 100.0 2.1E-34 4.5E-39 270.8 30.8 295 522-936 11-309 (311)
36 KOG0296 Angio-associated migra 100.0 1E-33 2.2E-38 281.1 34.9 339 458-957 59-398 (399)
37 KOG0296 Angio-associated migra 100.0 1.6E-33 3.5E-38 279.8 34.4 329 414-915 60-398 (399)
38 KOG0285 Pleiotropic regulator 100.0 1.6E-34 3.6E-39 284.9 25.9 293 347-673 141-440 (460)
39 KOG0645 WD40 repeat protein [G 100.0 3.3E-33 7.1E-38 266.5 31.2 285 355-672 13-311 (312)
40 KOG0284 Polyadenylation factor 100.0 1.3E-34 2.9E-39 291.0 18.4 284 355-672 95-380 (464)
41 KOG2048 WD40 repeat protein [G 100.0 1E-29 2.3E-34 272.5 55.6 546 417-1102 24-601 (691)
42 KOG0265 U5 snRNP-specific prot 100.0 5.1E-33 1.1E-37 269.1 27.2 287 351-669 42-335 (338)
43 KOG0265 U5 snRNP-specific prot 100.0 1.4E-32 3.1E-37 266.0 29.6 251 413-674 42-298 (338)
44 KOG0263 Transcription initiati 100.0 1.3E-33 2.8E-38 309.0 23.0 276 775-1107 377-654 (707)
45 KOG0266 WD40 repeat-containing 100.0 3.6E-32 7.9E-37 311.3 33.5 286 355-672 158-454 (456)
46 KOG0285 Pleiotropic regulator 100.0 1.5E-32 3.2E-37 271.2 25.8 246 413-674 146-391 (460)
47 KOG0292 Vesicle coat complex C 100.0 1.2E-30 2.6E-35 285.8 42.5 476 414-1059 5-488 (1202)
48 KOG0645 WD40 repeat protein [G 100.0 1.7E-31 3.6E-36 254.9 30.4 292 774-1102 12-311 (312)
49 KOG0295 WD40 repeat-containing 100.0 2.4E-32 5.2E-37 271.2 24.8 253 414-681 104-372 (406)
50 KOG0316 Conserved WD40 repeat- 100.0 1.2E-31 2.5E-36 250.0 25.6 288 346-670 6-297 (307)
51 KOG0266 WD40 repeat-containing 100.0 2.8E-31 6.1E-36 304.0 33.0 288 775-1102 158-454 (456)
52 KOG0282 mRNA splicing factor [ 100.0 1.1E-32 2.4E-37 283.8 18.1 293 346-670 203-503 (503)
53 KOG0281 Beta-TrCP (transducin 100.0 9.8E-33 2.1E-37 270.9 16.7 274 355-674 196-479 (499)
54 KOG0293 WD40 repeat-containing 100.0 1.1E-31 2.3E-36 270.0 24.3 259 413-683 219-480 (519)
55 KOG1445 Tumor-specific antigen 100.0 4.2E-30 9.2E-35 271.0 36.6 685 330-1071 50-865 (1012)
56 KOG0284 Polyadenylation factor 100.0 2.1E-32 4.5E-37 275.3 18.1 285 417-807 95-381 (464)
57 KOG2048 WD40 repeat protein [G 100.0 1E-27 2.2E-32 257.3 53.6 552 355-1006 24-601 (691)
58 cd00200 WD40 WD40 domain, foun 100.0 2.2E-29 4.7E-34 276.8 37.3 283 354-670 7-289 (289)
59 KOG0281 Beta-TrCP (transducin 100.0 2.8E-31 6E-36 260.8 16.8 232 417-674 196-430 (499)
60 KOG0282 mRNA splicing factor [ 100.0 5.6E-31 1.2E-35 271.3 19.4 285 773-1100 211-503 (503)
61 KOG0278 Serine/threonine kinas 100.0 9.4E-31 2E-35 246.0 18.3 288 350-674 8-299 (334)
62 KOG0316 Conserved WD40 repeat- 100.0 1.5E-29 3.3E-34 235.9 25.4 247 412-674 11-259 (307)
63 PLN00181 protein SPA1-RELATED; 100.0 1.7E-28 3.6E-33 304.2 40.5 292 354-671 481-792 (793)
64 cd00200 WD40 WD40 domain, foun 100.0 2.9E-28 6.4E-33 267.8 37.2 247 414-674 5-251 (289)
65 KOG0640 mRNA cleavage stimulat 100.0 1E-28 2.2E-33 239.4 27.6 307 352-671 108-425 (430)
66 KOG0641 WD40 repeat protein [G 100.0 9.5E-28 2.1E-32 222.0 32.1 309 348-672 24-349 (350)
67 PLN00181 protein SPA1-RELATED; 100.0 2.7E-28 5.9E-33 302.3 37.8 296 774-1101 481-792 (793)
68 KOG1445 Tumor-specific antigen 100.0 1.2E-27 2.6E-32 252.6 34.6 672 413-1110 74-852 (1012)
69 KOG0313 Microtubule binding pr 100.0 1.3E-28 2.9E-33 246.0 26.0 290 345-671 94-417 (423)
70 KOG0275 Conserved WD40 repeat- 100.0 8.7E-30 1.9E-34 247.7 16.7 291 775-1100 212-507 (508)
71 KOG0288 WD40 repeat protein Ti 100.0 1.7E-29 3.8E-34 254.9 17.4 294 343-669 161-458 (459)
72 KOG0973 Histone transcription 100.0 3.1E-28 6.8E-33 276.5 28.4 306 355-674 12-357 (942)
73 KOG0643 Translation initiation 100.0 1.5E-27 3.4E-32 227.1 28.0 289 350-674 4-319 (327)
74 KOG0310 Conserved WD40 repeat- 100.0 5.9E-28 1.3E-32 249.8 26.9 282 355-670 25-307 (487)
75 KOG1407 WD40 repeat protein [F 100.0 3.5E-27 7.7E-32 224.0 28.4 275 354-663 18-293 (313)
76 KOG0643 Translation initiation 100.0 2.7E-27 5.9E-32 225.4 27.5 234 414-663 6-252 (327)
77 KOG0278 Serine/threonine kinas 100.0 1.8E-28 3.9E-33 230.7 17.0 288 546-960 9-300 (334)
78 KOG0647 mRNA export protein (c 100.0 4.1E-27 8.9E-32 228.5 26.1 273 355-660 26-311 (347)
79 KOG1407 WD40 repeat protein [F 100.0 1.4E-26 2.9E-31 220.1 26.8 277 458-907 15-294 (313)
80 KOG0973 Histone transcription 100.0 4.2E-27 9.2E-32 267.4 26.9 306 775-1107 12-360 (942)
81 PTZ00421 coronin; Provisional 100.0 6.8E-26 1.5E-30 257.3 36.2 286 357-654 21-315 (493)
82 KOG0277 Peroxisomal targeting 100.0 4.3E-27 9.4E-32 222.4 21.7 284 360-671 12-308 (311)
83 KOG0283 WD40 repeat-containing 100.0 3.4E-27 7.5E-32 261.5 24.1 249 416-674 265-578 (712)
84 KOG0283 WD40 repeat-containing 100.0 6.9E-27 1.5E-31 259.1 26.3 274 774-1053 265-579 (712)
85 KOG1446 Histone H3 (Lys4) meth 100.0 2E-25 4.3E-30 219.6 33.5 282 355-672 13-303 (311)
86 KOG0274 Cdc4 and related F-box 100.0 1.7E-26 3.7E-31 261.8 30.1 277 355-674 207-484 (537)
87 KOG0313 Microtubule binding pr 100.0 2.7E-26 5.7E-31 229.6 26.8 308 415-914 102-417 (423)
88 KOG0640 mRNA cleavage stimulat 100.0 1.1E-26 2.3E-31 225.5 22.2 294 412-804 106-424 (430)
89 KOG0310 Conserved WD40 repeat- 99.9 2E-26 4.3E-31 238.5 24.4 283 775-1102 25-309 (487)
90 KOG0305 Anaphase promoting com 99.9 4.8E-26 1E-30 246.8 27.9 277 361-674 182-463 (484)
91 KOG1446 Histone H3 (Lys4) meth 99.9 5.6E-25 1.2E-29 216.5 31.4 289 775-1105 13-306 (311)
92 KOG0294 WD40 repeat-containing 99.9 2E-25 4.3E-30 218.1 27.0 241 840-1104 40-283 (362)
93 KOG0288 WD40 repeat protein Ti 99.9 1.3E-26 2.9E-31 234.2 18.9 253 414-681 171-425 (459)
94 KOG0300 WD40 repeat-containing 99.9 4.4E-26 9.5E-31 221.6 21.8 297 347-674 138-478 (481)
95 PTZ00421 coronin; Provisional 99.9 4.8E-25 1E-29 250.4 33.6 262 776-1058 20-298 (493)
96 KOG2096 WD40 repeat protein [G 99.9 2.8E-25 6.1E-30 216.6 27.0 307 640-1051 84-403 (420)
97 KOG0299 U3 snoRNP-associated p 99.9 1.7E-25 3.6E-30 229.8 26.7 286 353-660 139-443 (479)
98 KOG0772 Uncharacterized conser 99.9 7.1E-26 1.5E-30 234.7 24.2 297 773-1102 164-488 (641)
99 KOG1963 WD40 repeat protein [G 99.9 1.1E-23 2.4E-28 234.3 41.8 564 416-1105 14-653 (792)
100 PTZ00420 coronin; Provisional 99.9 1.6E-24 3.5E-29 246.4 36.0 256 375-654 50-318 (568)
101 KOG0308 Conserved WD40 repeat- 99.9 4.8E-26 1E-30 242.8 21.5 242 423-674 29-287 (735)
102 KOG0299 U3 snoRNP-associated p 99.9 2.6E-25 5.6E-30 228.4 26.0 252 414-676 138-414 (479)
103 KOG0289 mRNA splicing factor [ 99.9 6.7E-25 1.5E-29 223.1 28.0 285 356-671 219-505 (506)
104 KOG0305 Anaphase promoting com 99.9 2.7E-25 5.8E-30 241.1 26.8 259 341-630 201-463 (484)
105 KOG0772 Uncharacterized conser 99.9 2.9E-25 6.4E-30 230.1 24.4 299 350-672 160-487 (641)
106 KOG0268 Sof1-like rRNA process 99.9 3.1E-26 6.7E-31 227.5 16.4 286 458-875 61-348 (433)
107 KOG0289 mRNA splicing factor [ 99.9 1.1E-24 2.3E-29 221.6 27.4 243 774-1049 259-505 (506)
108 KOG0647 mRNA export protein (c 99.9 8.6E-25 1.9E-29 212.4 25.4 249 415-674 24-283 (347)
109 KOG0274 Cdc4 and related F-box 99.9 8.5E-25 1.8E-29 248.0 29.6 279 775-1108 207-488 (537)
110 KOG0277 Peroxisomal targeting 99.9 3.6E-25 7.7E-30 209.6 21.9 251 349-627 53-308 (311)
111 KOG0641 WD40 repeat protein [G 99.9 6.7E-24 1.4E-28 196.6 28.9 304 775-1102 31-349 (350)
112 KOG0294 WD40 repeat-containing 99.9 1.8E-24 3.9E-29 211.5 26.4 243 414-674 39-283 (362)
113 KOG2096 WD40 repeat protein [G 99.9 2.1E-24 4.6E-29 210.6 26.2 309 411-870 79-400 (420)
114 KOG0300 WD40 repeat-containing 99.9 5.1E-25 1.1E-29 214.2 21.4 333 588-1052 139-478 (481)
115 KOG0308 Conserved WD40 repeat- 99.9 8.6E-25 1.9E-29 233.3 22.8 293 355-672 20-327 (735)
116 KOG0301 Phospholipase A2-activ 99.9 3E-24 6.5E-29 231.2 27.0 282 348-673 5-289 (745)
117 KOG0268 Sof1-like rRNA process 99.9 1.9E-25 4.1E-30 221.9 15.7 284 353-674 63-347 (433)
118 KOG0301 Phospholipase A2-activ 99.9 2.6E-24 5.6E-29 231.6 24.1 274 773-1102 11-288 (745)
119 KOG1332 Vesicle coat complex C 99.9 1.2E-24 2.6E-29 204.8 18.5 254 413-673 6-287 (299)
120 KOG1963 WD40 repeat protein [G 99.9 3.1E-22 6.8E-27 222.8 40.6 518 459-1110 12-591 (792)
121 KOG1036 Mitotic spindle checkp 99.9 2.6E-23 5.7E-28 203.4 27.4 271 355-662 12-294 (323)
122 PTZ00420 coronin; Provisional 99.9 6.9E-23 1.5E-27 233.1 33.5 228 436-674 50-295 (568)
123 KOG1274 WD40 repeat protein [G 99.9 4.1E-20 8.9E-25 206.1 53.2 278 353-669 10-297 (933)
124 KOG0639 Transducin-like enhanc 99.9 3.8E-24 8.3E-29 220.7 19.3 293 348-671 411-703 (705)
125 KOG4283 Transcription-coupled 99.9 1.2E-22 2.7E-27 196.2 26.5 318 323-671 25-364 (397)
126 KOG0264 Nucleosome remodeling 99.9 5.2E-23 1.1E-27 212.1 23.7 265 348-628 116-404 (422)
127 KOG0639 Transducin-like enhanc 99.9 3.3E-23 7.1E-28 213.9 21.5 282 775-1101 418-703 (705)
128 KOG1274 WD40 repeat protein [G 99.9 2.3E-22 4.9E-27 223.9 28.6 285 774-1099 11-297 (933)
129 KOG0646 WD40 repeat protein [G 99.9 1.5E-22 3.2E-27 208.8 23.1 225 417-653 80-330 (476)
130 KOG1273 WD40 repeat protein [G 99.9 4.2E-22 9.2E-27 194.4 24.5 297 345-673 13-323 (405)
131 KOG2055 WD40 repeat protein [G 99.9 4.8E-22 1E-26 204.3 24.2 289 355-672 212-512 (514)
132 KOG0646 WD40 repeat protein [G 99.9 6.1E-22 1.3E-26 204.3 24.9 294 576-990 17-332 (476)
133 KOG1036 Mitotic spindle checkp 99.9 1.9E-21 4E-26 190.5 27.0 243 415-674 10-264 (323)
134 KOG0264 Nucleosome remodeling 99.9 3.2E-22 6.9E-27 206.4 22.2 253 415-674 121-406 (422)
135 KOG1332 Vesicle coat complex C 99.9 2.2E-22 4.7E-27 189.7 18.8 252 355-628 10-286 (299)
136 KOG4328 WD40 protein [Function 99.9 1E-21 2.3E-26 201.7 24.1 294 355-672 185-495 (498)
137 KOG1273 WD40 repeat protein [G 99.9 1.4E-21 3.1E-26 190.8 23.5 253 421-685 26-292 (405)
138 KOG2055 WD40 repeat protein [G 99.9 1.9E-21 4E-26 200.0 24.7 249 775-1050 256-512 (514)
139 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.2E-20 1.6E-24 202.7 36.0 276 371-682 3-288 (300)
140 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2E-19 4.3E-24 199.1 39.3 292 479-937 3-300 (300)
141 KOG4283 Transcription-coupled 99.9 2E-20 4.2E-25 181.1 26.0 214 414-632 39-280 (397)
142 KOG1538 Uncharacterized conser 99.9 7E-20 1.5E-24 195.4 32.6 452 420-1002 14-520 (1081)
143 KOG0267 Microtubule severing p 99.9 9.6E-23 2.1E-27 220.3 10.4 236 414-663 24-259 (825)
144 KOG0650 WD40 repeat nucleolar 99.9 5.6E-21 1.2E-25 202.2 23.2 323 412-869 394-732 (733)
145 KOG1538 Uncharacterized conser 99.9 1.8E-19 4E-24 192.3 33.8 276 552-958 13-294 (1081)
146 KOG0321 WD40 repeat-containing 99.9 8.7E-21 1.9E-25 202.6 23.5 289 788-1104 64-393 (720)
147 KOG1009 Chromatin assembly com 99.9 2.7E-20 5.8E-25 188.8 24.5 304 355-674 12-374 (434)
148 KOG0321 WD40 repeat-containing 99.9 1.4E-20 2.9E-25 201.1 23.2 289 362-674 55-393 (720)
149 KOG0269 WD40 repeat-containing 99.9 1.8E-21 3.8E-26 212.5 15.9 248 358-630 89-342 (839)
150 KOG0650 WD40 repeat nucleolar 99.9 5.9E-20 1.3E-24 194.5 23.2 327 589-1003 392-732 (733)
151 KOG0270 WD40 repeat-containing 99.9 2.1E-20 4.6E-25 191.8 19.1 249 422-676 177-453 (463)
152 KOG0269 WD40 repeat-containing 99.9 2.4E-20 5.1E-25 203.8 20.1 300 353-674 36-342 (839)
153 KOG2445 Nuclear pore complex c 99.8 4.2E-19 9.2E-24 173.5 26.0 255 414-672 9-318 (361)
154 KOG0267 Microtubule severing p 99.8 2.6E-21 5.6E-26 209.4 10.9 233 355-619 27-259 (825)
155 KOG0307 Vesicle coat complex C 99.8 9.2E-21 2E-25 217.0 15.6 251 418-674 64-329 (1049)
156 COG2319 FOG: WD40 repeat [Gene 99.8 1.2E-16 2.7E-21 187.5 48.0 373 459-958 61-443 (466)
157 KOG2445 Nuclear pore complex c 99.8 3.6E-18 7.8E-23 167.0 26.8 254 354-629 11-319 (361)
158 KOG1034 Transcriptional repres 99.8 2.8E-19 6E-24 176.3 19.2 259 355-671 88-382 (385)
159 KOG4497 Uncharacterized conser 99.8 2.1E-18 4.6E-23 169.7 23.7 409 423-950 13-425 (447)
160 KOG4378 Nuclear protein COP1 [ 99.8 1.1E-18 2.3E-23 180.7 22.7 274 379-682 12-290 (673)
161 KOG0302 Ribosome Assembly prot 99.8 1E-18 2.2E-23 175.4 21.0 267 346-625 141-435 (440)
162 KOG4378 Nuclear protein COP1 [ 99.8 6.6E-19 1.4E-23 182.3 19.7 293 744-1081 7-305 (673)
163 COG2319 FOG: WD40 repeat [Gene 99.8 9.4E-16 2E-20 179.9 49.8 372 414-916 61-443 (466)
164 KOG0302 Ribosome Assembly prot 99.8 7.6E-19 1.7E-23 176.3 19.4 173 346-540 200-379 (440)
165 KOG1034 Transcriptional repres 99.8 1.2E-18 2.7E-23 171.8 20.5 339 412-872 32-383 (385)
166 KOG1912 WD40 repeat protein [G 99.8 4.2E-17 9.1E-22 177.9 33.9 627 357-1054 16-745 (1062)
167 KOG2919 Guanine nucleotide-bin 99.8 2.4E-18 5.2E-23 169.1 21.8 288 359-663 52-361 (406)
168 KOG0303 Actin-binding protein 99.8 2.7E-18 5.8E-23 173.3 21.4 237 413-654 76-321 (472)
169 KOG0307 Vesicle coat complex C 99.8 4.2E-19 9.2E-24 203.5 17.3 261 350-631 58-330 (1049)
170 KOG4328 WD40 protein [Function 99.8 7.3E-18 1.6E-22 173.7 23.7 313 493-915 172-495 (498)
171 KOG0270 WD40 repeat-containing 99.8 3.2E-18 7E-23 175.9 19.1 266 358-634 175-455 (463)
172 KOG2919 Guanine nucleotide-bin 99.8 1.4E-17 3.1E-22 163.7 22.4 227 785-1042 120-362 (406)
173 KOG1009 Chromatin assembly com 99.8 1.9E-17 4.1E-22 168.4 23.6 301 776-1106 13-376 (434)
174 KOG1912 WD40 repeat protein [G 99.8 7.1E-16 1.5E-20 168.5 35.8 606 419-1113 16-731 (1062)
175 KOG0303 Actin-binding protein 99.8 2.2E-17 4.7E-22 166.8 22.4 245 429-681 43-303 (472)
176 KOG1524 WD40 repeat-containing 99.8 1.9E-16 4.1E-21 165.8 28.4 494 416-1053 12-526 (737)
177 KOG1310 WD40 repeat protein [G 99.8 9.9E-17 2.2E-21 168.3 24.4 241 413-682 45-313 (758)
178 KOG4227 WD40 repeat protein [G 99.8 9.8E-17 2.1E-21 161.2 22.7 297 352-672 52-387 (609)
179 KOG1334 WD40 repeat protein [G 99.8 6.1E-18 1.3E-22 175.5 14.0 297 350-673 135-467 (559)
180 KOG0649 WD40 repeat protein [G 99.8 7.8E-16 1.7E-20 145.5 26.3 280 359-669 13-313 (325)
181 KOG1524 WD40 repeat-containing 99.8 9.7E-16 2.1E-20 160.6 29.3 210 430-670 75-284 (737)
182 KOG1188 WD40 repeat protein [G 99.7 9E-17 1.9E-21 159.9 19.9 275 371-673 42-347 (376)
183 KOG0642 Cell-cycle nuclear pro 99.7 2.3E-17 5E-22 174.8 15.7 250 414-674 290-563 (577)
184 KOG0290 Conserved WD40 repeat- 99.7 6.3E-16 1.4E-20 150.1 23.6 291 348-668 36-361 (364)
185 KOG1188 WD40 repeat protein [G 99.7 1E-16 2.2E-21 159.5 18.5 293 479-805 42-345 (376)
186 KOG4497 Uncharacterized conser 99.7 5.9E-16 1.3E-20 152.7 23.5 381 361-907 13-424 (447)
187 KOG0644 Uncharacterized conser 99.7 1.3E-17 2.8E-22 183.2 12.8 281 351-674 185-470 (1113)
188 PRK11028 6-phosphogluconolacto 99.7 1E-15 2.3E-20 170.5 27.7 274 743-1050 6-304 (330)
189 KOG0322 G-protein beta subunit 99.7 2.3E-16 4.9E-21 151.2 18.8 308 543-956 6-322 (323)
190 KOG2110 Uncharacterized conser 99.7 2.3E-15 4.9E-20 151.8 26.6 241 843-1105 5-251 (391)
191 KOG0649 WD40 repeat protein [G 99.7 2.7E-15 5.8E-20 142.0 25.1 285 778-1099 12-313 (325)
192 KOG0644 Uncharacterized conser 99.7 2.9E-17 6.3E-22 180.5 12.0 238 414-675 186-429 (1113)
193 KOG1007 WD repeat protein TSSC 99.7 3.8E-16 8.3E-21 151.4 18.2 242 348-627 113-360 (370)
194 KOG0642 Cell-cycle nuclear pro 99.7 7.8E-17 1.7E-21 170.9 13.7 261 354-638 292-571 (577)
195 KOG0322 G-protein beta subunit 99.7 3.5E-16 7.6E-21 149.9 16.6 246 413-671 9-322 (323)
196 KOG4227 WD40 repeat protein [G 99.7 7.8E-16 1.7E-20 154.8 19.8 254 413-674 51-324 (609)
197 KOG1587 Cytoplasmic dynein int 99.7 4.8E-15 1E-19 167.0 27.5 251 416-674 240-518 (555)
198 PRK11028 6-phosphogluconolacto 99.7 5.9E-14 1.3E-18 156.4 36.2 273 370-673 3-305 (330)
199 KOG1007 WD repeat protein TSSC 99.7 6E-15 1.3E-19 143.2 22.0 251 411-671 56-360 (370)
200 KOG1517 Guanine nucleotide bin 99.7 8E-15 1.7E-19 165.8 26.0 200 850-1053 1172-1384(1387)
201 KOG2110 Uncharacterized conser 99.7 8.5E-14 1.9E-18 140.6 30.4 241 417-674 4-250 (391)
202 PRK01742 tolB translocation pr 99.7 9.8E-15 2.1E-19 167.5 25.3 235 378-653 183-426 (429)
203 KOG1587 Cytoplasmic dynein int 99.7 1.4E-14 3E-19 163.3 25.8 270 339-629 226-517 (555)
204 KOG1517 Guanine nucleotide bin 99.7 1.3E-14 2.9E-19 164.1 25.3 291 358-674 1066-1383(1387)
205 KOG0771 Prolactin regulatory e 99.7 8.7E-16 1.9E-20 158.0 14.4 198 847-1051 148-355 (398)
206 KOG1240 Protein kinase contain 99.6 5.3E-14 1.1E-18 162.1 28.6 255 414-674 1044-1336(1431)
207 KOG0974 WD-repeat protein WDR6 99.6 1.8E-12 3.9E-17 148.3 40.2 194 358-586 89-289 (967)
208 KOG0771 Prolactin regulatory e 99.6 1.6E-15 3.6E-20 156.0 13.9 197 888-1103 148-355 (398)
209 KOG0290 Conserved WD40 repeat- 99.6 6.2E-14 1.4E-18 136.4 22.9 242 841-1093 94-357 (364)
210 KOG1523 Actin-related protein 99.6 8.3E-14 1.8E-18 137.8 24.1 229 355-609 9-260 (361)
211 KOG1334 WD40 repeat protein [G 99.6 3.5E-15 7.6E-20 155.3 15.0 324 458-918 137-469 (559)
212 PF02239 Cytochrom_D1: Cytochr 99.6 4.6E-13 9.9E-18 147.9 31.1 318 576-1015 15-356 (369)
213 KOG1523 Actin-related protein 99.6 1.4E-13 3.1E-18 136.1 22.8 234 418-663 10-269 (361)
214 PF02239 Cytochrom_D1: Cytochr 99.6 8E-13 1.7E-17 145.9 31.6 318 524-961 9-351 (369)
215 KOG2139 WD40 repeat protein [G 99.6 3.7E-13 8.1E-18 135.1 24.6 262 775-1050 139-431 (445)
216 KOG2139 WD40 repeat protein [G 99.6 5.9E-13 1.3E-17 133.7 26.0 287 356-672 98-431 (445)
217 PRK01742 tolB translocation pr 99.6 1.8E-13 3.9E-18 157.1 25.6 235 576-938 183-426 (429)
218 KOG2111 Uncharacterized conser 99.6 2.2E-12 4.8E-17 127.9 29.1 241 420-674 7-258 (346)
219 KOG0974 WD-repeat protein WDR6 99.6 1E-11 2.2E-16 142.2 38.7 276 359-674 10-290 (967)
220 KOG1240 Protein kinase contain 99.6 4.6E-13 1E-17 154.5 27.3 267 347-629 1038-1335(1431)
221 KOG2321 WD40 repeat protein [G 99.6 2.7E-13 5.9E-18 144.0 22.8 289 348-673 43-344 (703)
222 COG4946 Uncharacterized protei 99.6 1.9E-10 4E-15 119.9 42.7 145 775-947 358-508 (668)
223 PF04762 IKI3: IKI3 family; I 99.6 1E-08 2.2E-13 126.0 64.7 534 416-1055 73-689 (928)
224 KOG1272 WD40-repeat-containing 99.6 1.9E-14 4.2E-19 148.9 12.2 288 357-683 130-420 (545)
225 COG4946 Uncharacterized protei 99.6 6.2E-10 1.3E-14 116.1 44.3 519 347-1051 69-655 (668)
226 KOG2111 Uncharacterized conser 99.5 1.1E-12 2.4E-17 130.0 22.9 241 845-1105 7-259 (346)
227 PRK03629 tolB translocation pr 99.5 3.5E-12 7.5E-17 146.0 29.2 237 380-652 180-427 (429)
228 KOG2041 WD40 repeat protein [G 99.5 5.2E-12 1.1E-16 137.2 27.7 518 417-1051 13-620 (1189)
229 KOG2394 WD40 protein DMR-N9 [G 99.5 6.5E-13 1.4E-17 140.2 20.3 118 843-961 290-456 (636)
230 KOG1310 WD40 repeat protein [G 99.5 1.8E-13 3.9E-18 144.3 15.7 239 354-636 48-311 (758)
231 COG5354 Uncharacterized protei 99.5 1.3E-11 2.9E-16 130.0 28.2 286 355-677 31-353 (561)
232 PRK05137 tolB translocation pr 99.5 9.6E-12 2.1E-16 143.5 29.4 237 379-652 182-432 (435)
233 KOG2321 WD40 repeat protein [G 99.5 3.4E-12 7.5E-17 135.8 23.0 197 847-1054 137-347 (703)
234 PRK04922 tolB translocation pr 99.5 4.3E-12 9.4E-17 146.1 25.8 238 379-652 184-432 (433)
235 KOG1832 HIV-1 Vpr-binding prot 99.5 8.8E-14 1.9E-18 154.1 9.8 255 355-660 1100-1377(1516)
236 KOG1409 Uncharacterized conser 99.5 2.5E-12 5.3E-17 128.6 18.9 343 588-1051 15-395 (404)
237 PRK02889 tolB translocation pr 99.5 9.4E-12 2E-16 142.7 26.8 224 415-653 192-425 (427)
238 KOG2041 WD40 repeat protein [G 99.5 3E-10 6.5E-15 123.8 36.2 538 355-1007 13-620 (1189)
239 KOG2394 WD40 protein DMR-N9 [G 99.5 3.9E-12 8.4E-17 134.5 20.9 253 357-651 124-383 (636)
240 PF10282 Lactonase: Lactonase, 99.5 3.7E-10 8.1E-15 125.6 37.2 207 846-1055 89-329 (345)
241 PRK04922 tolB translocation pr 99.4 1.8E-11 4E-16 140.9 26.2 226 349-608 196-432 (433)
242 PRK03629 tolB translocation pr 99.4 2.2E-11 4.8E-16 139.4 26.2 222 353-608 195-427 (429)
243 COG2706 3-carboxymuconate cycl 99.4 2.6E-10 5.7E-15 116.4 30.7 279 748-1052 15-323 (346)
244 KOG2315 Predicted translation 99.4 9.3E-11 2E-15 125.5 28.5 330 552-958 35-391 (566)
245 KOG2659 LisH motif-containing 99.4 1.1E-12 2.4E-17 126.5 12.7 168 3-182 24-204 (228)
246 KOG2315 Predicted translation 99.4 3.2E-10 6.9E-15 121.5 32.0 285 778-1105 75-393 (566)
247 KOG2314 Translation initiation 99.4 5E-11 1.1E-15 126.6 25.6 315 327-672 215-573 (698)
248 PF04762 IKI3: IKI3 family; I 99.4 2.4E-07 5.1E-12 114.1 60.8 518 419-1102 22-639 (928)
249 PRK02889 tolB translocation pr 99.4 2.9E-11 6.2E-16 138.7 24.3 225 350-608 189-424 (427)
250 COG5354 Uncharacterized protei 99.4 1E-09 2.2E-14 116.0 32.3 345 534-1054 15-399 (561)
251 KOG1272 WD40-repeat-containing 99.4 1.5E-12 3.2E-17 135.2 11.1 232 418-670 129-360 (545)
252 KOG3881 Uncharacterized conser 99.4 7.2E-11 1.6E-15 120.6 21.9 273 355-652 54-341 (412)
253 PRK05137 tolB translocation pr 99.4 1.4E-10 2.9E-15 134.0 26.8 225 350-608 195-432 (435)
254 KOG1354 Serine/threonine prote 99.4 2.2E-10 4.8E-15 114.7 23.6 193 463-674 25-246 (433)
255 PF08662 eIF2A: Eukaryotic tra 99.4 5.6E-11 1.2E-15 119.0 19.5 155 888-1059 9-187 (194)
256 TIGR02658 TTQ_MADH_Hv methylam 99.3 4.3E-09 9.3E-14 113.1 34.7 204 848-1059 109-339 (352)
257 PF08662 eIF2A: Eukaryotic tra 99.3 3E-11 6.6E-16 120.9 16.9 147 327-503 10-186 (194)
258 COG2706 3-carboxymuconate cycl 99.3 3.1E-09 6.8E-14 108.7 30.9 255 842-1110 38-329 (346)
259 KOG1354 Serine/threonine prote 99.3 1.7E-10 3.7E-15 115.5 20.1 257 418-681 25-368 (433)
260 PRK04792 tolB translocation pr 99.3 8.7E-10 1.9E-14 126.7 28.9 223 414-652 213-446 (448)
261 KOG2314 Translation initiation 99.3 2.6E-09 5.5E-14 113.9 29.5 357 533-1051 192-574 (698)
262 PF10282 Lactonase: Lactonase, 99.3 2.5E-08 5.3E-13 111.1 39.4 246 418-672 36-322 (345)
263 KOG3881 Uncharacterized conser 99.3 2.2E-10 4.7E-15 117.2 20.6 245 417-674 54-322 (412)
264 PRK00178 tolB translocation pr 99.3 1.4E-09 3E-14 126.0 29.6 222 415-652 195-427 (430)
265 PRK01029 tolB translocation pr 99.3 1.9E-09 4.2E-14 122.7 29.7 227 415-654 181-426 (428)
266 TIGR02800 propeller_TolB tol-p 99.3 1.4E-09 3.1E-14 126.0 28.9 210 414-637 185-405 (417)
267 PRK04792 tolB translocation pr 99.3 7.8E-10 1.7E-14 127.1 25.0 223 352-608 213-446 (448)
268 KOG1409 Uncharacterized conser 99.3 2.9E-10 6.4E-15 114.0 18.2 211 458-683 19-238 (404)
269 PRK01029 tolB translocation pr 99.2 1.3E-09 2.8E-14 124.2 25.5 225 355-609 183-425 (428)
270 KOG4547 WD40 repeat-containing 99.2 9.4E-10 2E-14 119.1 22.5 188 853-1051 3-221 (541)
271 PRK00178 tolB translocation pr 99.2 1.8E-09 3.8E-14 125.2 26.9 227 349-608 191-427 (430)
272 KOG4547 WD40 repeat-containing 99.2 1.4E-09 3E-14 117.9 23.5 194 427-629 2-221 (541)
273 TIGR02658 TTQ_MADH_Hv methylam 99.2 2.3E-08 5.1E-13 107.5 32.7 267 379-681 27-338 (352)
274 TIGR02800 propeller_TolB tol-p 99.2 2.3E-09 5E-14 124.3 27.2 213 350-595 183-406 (417)
275 KOG0280 Uncharacterized conser 99.2 2.1E-09 4.5E-14 105.9 20.6 254 355-631 68-336 (339)
276 TIGR03300 assembly_YfgL outer 99.1 4.1E-08 8.8E-13 111.8 29.9 306 522-954 66-376 (377)
277 TIGR03300 assembly_YfgL outer 99.0 2.4E-07 5.1E-12 105.5 31.9 183 479-674 67-261 (377)
278 KOG0309 Conserved WD40 repeat- 99.0 2.9E-09 6.3E-14 116.9 14.9 278 327-629 29-340 (1081)
279 KOG0280 Uncharacterized conser 99.0 7E-08 1.5E-12 95.3 20.5 271 379-674 46-335 (339)
280 PLN02919 haloacid dehalogenase 99.0 2.2E-07 4.7E-12 116.9 30.4 261 780-1054 571-892 (1057)
281 PLN02919 haloacid dehalogenase 99.0 2.8E-07 6E-12 116.0 31.0 254 847-1106 571-892 (1057)
282 KOG4190 Uncharacterized conser 98.9 2.9E-09 6.2E-14 112.8 8.9 220 877-1116 728-962 (1034)
283 KOG1064 RAVE (regulator of V-A 98.9 7E-09 1.5E-13 124.9 13.0 201 414-638 2204-2408(2439)
284 KOG1897 Damage-specific DNA bi 98.9 0.00023 5.1E-09 82.7 48.2 287 778-1107 585-903 (1096)
285 PRK04043 tolB translocation pr 98.9 8.9E-07 1.9E-11 100.2 28.4 197 357-587 188-402 (419)
286 KOG4190 Uncharacterized conser 98.9 8.7E-09 1.9E-13 109.2 11.0 241 413-670 730-986 (1034)
287 PF15492 Nbas_N: Neuroblastoma 98.9 1.2E-06 2.5E-11 87.5 23.8 209 848-1061 2-270 (282)
288 KOG3914 WD repeat protein WDR4 98.8 4E-08 8.7E-13 101.7 13.3 159 930-1106 65-227 (390)
289 KOG3617 WD40 and TPR repeat-co 98.8 2E-06 4.3E-11 96.6 25.7 551 422-1091 19-627 (1416)
290 KOG3914 WD repeat protein WDR4 98.8 7.4E-08 1.6E-12 99.8 13.3 163 359-547 65-231 (390)
291 KOG1064 RAVE (regulator of V-A 98.8 3.1E-08 6.8E-13 119.5 11.9 225 430-681 2180-2406(2439)
292 KOG1832 HIV-1 Vpr-binding prot 98.7 8.5E-09 1.8E-13 115.5 5.6 216 413-659 1096-1318(1516)
293 PRK04043 tolB translocation pr 98.7 6.1E-06 1.3E-10 93.5 28.7 197 420-630 189-402 (419)
294 PF07433 DUF1513: Protein of u 98.7 3.6E-06 7.8E-11 87.1 24.0 183 848-1040 55-276 (305)
295 PF13360 PQQ_2: PQQ-like domai 98.7 1.7E-06 3.6E-11 91.7 22.7 224 863-1109 2-237 (238)
296 PRK11138 outer membrane biogen 98.7 6.7E-06 1.4E-10 93.9 28.8 307 522-956 70-393 (394)
297 KOG3617 WD40 and TPR repeat-co 98.7 1.4E-06 2.9E-11 97.9 21.7 110 360-496 19-132 (1416)
298 COG5170 CDC55 Serine/threonine 98.7 3.3E-07 7.2E-12 90.9 14.5 249 417-672 25-367 (460)
299 KOG4532 WD40-like repeat conta 98.7 2E-06 4.3E-11 84.1 19.5 149 420-570 160-321 (344)
300 KOG4532 WD40-like repeat conta 98.7 3.3E-06 7.2E-11 82.5 21.0 239 856-1105 85-334 (344)
301 COG5170 CDC55 Serine/threonine 98.7 2.6E-07 5.6E-12 91.7 13.5 118 841-959 170-311 (460)
302 PF15492 Nbas_N: Neuroblastoma 98.7 1.8E-05 4E-10 79.2 26.5 246 361-638 2-269 (282)
303 PF07433 DUF1513: Protein of u 98.7 2.8E-05 6E-10 80.7 28.8 208 845-1059 6-256 (305)
304 KOG0309 Conserved WD40 repeat- 98.7 3.7E-07 7.9E-12 100.9 15.9 296 351-674 19-341 (1081)
305 PRK11138 outer membrane biogen 98.7 2.9E-05 6.3E-10 88.7 31.4 189 479-675 71-277 (394)
306 PF08450 SGL: SMP-30/Gluconola 98.6 3.1E-05 6.7E-10 82.1 28.8 219 423-661 4-244 (246)
307 KOG2695 WD40 repeat protein [G 98.6 1.7E-07 3.8E-12 94.6 8.6 164 363-550 218-387 (425)
308 KOG4714 Nucleoporin [Nuclear s 98.6 1.9E-06 4.2E-11 83.8 14.9 209 359-586 39-255 (319)
309 PF08450 SGL: SMP-30/Gluconola 98.6 0.00016 3.5E-09 76.6 31.4 220 361-617 4-244 (246)
310 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00013 2.8E-09 71.5 26.6 118 362-505 16-133 (354)
311 PF06433 Me-amine-dh_H: Methyl 98.5 4.7E-05 1E-09 80.0 25.6 205 848-1059 99-329 (342)
312 KOG0396 Uncharacterized conser 98.5 1.7E-06 3.7E-11 88.8 14.0 119 5-125 115-242 (389)
313 KOG0882 Cyclophilin-related pe 98.5 2.1E-06 4.6E-11 89.9 14.5 297 775-1099 8-369 (558)
314 KOG1645 RING-finger-containing 98.5 2.1E-05 4.5E-10 81.7 21.4 249 413-672 188-461 (463)
315 PF13360 PQQ_2: PQQ-like domai 98.5 4.3E-05 9.4E-10 80.8 25.1 222 438-677 1-235 (238)
316 KOG4714 Nucleoporin [Nuclear s 98.5 1.4E-06 3.1E-11 84.7 11.6 216 887-1123 39-273 (319)
317 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00079 1.7E-08 66.2 30.1 138 522-668 24-161 (354)
318 PF00930 DPPIV_N: Dipeptidyl p 98.5 9E-05 2E-09 83.0 27.7 265 365-661 1-346 (353)
319 PRK02888 nitrous-oxide reducta 98.4 5.4E-05 1.2E-09 86.0 25.1 187 849-1051 198-405 (635)
320 PF10607 CLTH: CTLH/CRA C-term 98.4 1.1E-06 2.3E-11 84.1 9.3 133 38-182 5-141 (145)
321 PRK02888 nitrous-oxide reducta 98.4 0.00012 2.6E-09 83.2 26.5 348 433-946 69-450 (635)
322 PF00400 WD40: WD domain, G-be 98.4 9.3E-07 2E-11 62.3 6.1 39 917-955 1-39 (39)
323 KOG0882 Cyclophilin-related pe 98.4 9.5E-06 2.1E-10 85.2 15.8 254 416-681 7-313 (558)
324 PF06433 Me-amine-dh_H: Methyl 98.3 0.00032 7E-09 73.8 25.8 136 531-674 17-167 (342)
325 KOG1920 IkappaB kinase complex 98.3 0.00019 4.2E-09 85.3 26.0 282 355-671 67-364 (1265)
326 KOG2066 Vacuolar assembly/sort 98.3 1.1E-05 2.5E-10 91.1 15.1 189 885-1102 40-233 (846)
327 KOG1920 IkappaB kinase complex 98.3 7.8E-05 1.7E-09 88.5 22.4 273 776-1102 68-365 (1265)
328 KOG2695 WD40 repeat protein [G 98.3 2.9E-06 6.3E-11 86.0 8.4 154 901-1062 228-388 (425)
329 KOG1275 PAB-dependent poly(A) 98.2 2.3E-05 4.9E-10 89.6 15.3 181 854-1048 146-340 (1118)
330 PF14583 Pectate_lyase22: Olig 98.2 0.003 6.5E-08 68.1 30.3 279 363-671 42-380 (386)
331 KOG1275 PAB-dependent poly(A) 98.2 5.6E-05 1.2E-09 86.6 18.1 182 429-626 146-340 (1118)
332 KOG1897 Damage-specific DNA bi 98.2 0.037 8.1E-07 65.3 56.0 225 856-1102 685-942 (1096)
333 KOG3621 WD40 repeat-containing 98.2 0.00033 7.1E-09 78.7 22.4 283 355-674 32-355 (726)
334 KOG2114 Vacuolar assembly/sort 98.2 0.00013 2.9E-09 83.3 19.7 205 891-1108 30-249 (933)
335 PF11768 DUF3312: Protein of u 98.2 5.7E-05 1.2E-09 83.6 16.4 137 340-499 189-333 (545)
336 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0015 3.2E-08 73.2 28.4 299 560-945 1-345 (353)
337 PF00400 WD40: WD domain, G-be 98.1 7.7E-06 1.7E-10 57.6 6.3 39 874-913 1-39 (39)
338 KOG2114 Vacuolar assembly/sort 98.1 0.00044 9.6E-09 79.3 23.0 203 849-1059 29-252 (933)
339 KOG1645 RING-finger-containing 98.1 0.00015 3.2E-09 75.6 17.5 244 355-628 192-461 (463)
340 cd00216 PQQ_DH Dehydrogenases 98.0 0.0048 1E-07 72.3 30.8 110 522-638 62-193 (488)
341 smart00668 CTLH C-terminal to 98.0 4.8E-06 1E-10 64.9 3.6 53 37-90 4-56 (58)
342 PF02897 Peptidase_S9_N: Proly 98.0 0.0083 1.8E-07 69.3 30.6 251 359-634 126-410 (414)
343 KOG3621 WD40 repeat-containing 97.9 0.0011 2.3E-08 74.7 21.3 158 776-958 76-245 (726)
344 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.051 1.1E-06 63.9 36.4 61 864-926 441-501 (527)
345 PF11768 DUF3312: Protein of u 97.9 0.00021 4.5E-09 79.3 15.2 83 346-450 249-331 (545)
346 PF08513 LisH: LisH; InterPro 97.9 1.5E-05 3.3E-10 49.5 3.8 27 6-32 1-27 (27)
347 cd00216 PQQ_DH Dehydrogenases 97.9 0.0035 7.7E-08 73.4 26.7 240 856-1113 111-435 (488)
348 PF14583 Pectate_lyase22: Olig 97.9 0.0032 7E-08 67.8 23.4 288 781-1102 40-381 (386)
349 KOG2066 Vacuolar assembly/sort 97.9 0.00065 1.4E-08 77.4 18.9 185 418-628 39-233 (846)
350 COG0823 TolB Periplasmic compo 97.9 0.0031 6.7E-08 71.1 23.9 195 459-664 188-391 (425)
351 smart00667 LisH Lissencephaly 97.8 3.4E-05 7.3E-10 52.2 4.1 32 4-35 2-33 (34)
352 PF08596 Lgl_C: Lethal giant l 97.8 0.0077 1.7E-07 67.3 24.8 253 358-617 3-325 (395)
353 PF08596 Lgl_C: Lethal giant l 97.8 0.0092 2E-07 66.6 25.1 241 420-670 3-333 (395)
354 PF04053 Coatomer_WDAD: Coatom 97.8 0.0027 5.9E-08 71.8 21.2 219 844-1104 33-264 (443)
355 PF04841 Vps16_N: Vps16, N-ter 97.7 0.014 3.1E-07 66.2 27.0 202 848-1061 33-257 (410)
356 COG3490 Uncharacterized protei 97.7 0.02 4.3E-07 57.6 22.9 254 602-955 71-346 (366)
357 KOG1008 Uncharacterized conser 97.7 1.8E-05 3.8E-10 87.1 2.1 205 355-585 55-275 (783)
358 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.089 1.9E-06 61.9 32.3 150 908-1060 272-500 (527)
359 PF06977 SdiA-regulated: SdiA- 97.6 0.022 4.8E-07 58.8 23.8 191 356-569 21-239 (248)
360 COG3391 Uncharacterized conser 97.6 0.012 2.6E-07 66.4 23.9 204 846-1059 76-292 (381)
361 PRK13616 lipoprotein LpqB; Pro 97.5 0.013 2.8E-07 69.2 23.0 214 884-1116 349-582 (591)
362 PF06977 SdiA-regulated: SdiA- 97.5 0.027 5.8E-07 58.2 22.4 201 842-1047 20-247 (248)
363 PF04053 Coatomer_WDAD: Coatom 97.5 0.014 3.1E-07 66.1 22.1 219 415-673 29-263 (443)
364 KOG2817 Predicted E3 ubiquitin 97.5 0.00096 2.1E-08 70.3 11.3 112 6-119 117-241 (394)
365 COG0823 TolB Periplasmic compo 97.5 0.0081 1.7E-07 67.8 19.6 194 350-572 185-390 (425)
366 PF02897 Peptidase_S9_N: Proly 97.4 0.1 2.3E-06 60.2 29.3 246 419-676 124-408 (414)
367 COG3391 Uncharacterized conser 97.4 0.31 6.6E-06 55.1 31.8 261 350-638 24-293 (381)
368 COG3490 Uncharacterized protei 97.4 0.066 1.4E-06 54.1 22.6 233 847-1100 71-346 (366)
369 PRK13616 lipoprotein LpqB; Pro 97.4 0.0079 1.7E-07 71.0 19.0 189 844-1045 350-563 (591)
370 PF00780 CNH: CNH domain; Int 97.3 0.12 2.6E-06 55.8 26.0 230 368-639 7-266 (275)
371 KOG1008 Uncharacterized conser 97.3 0.00011 2.3E-09 81.2 2.0 159 508-671 57-224 (783)
372 PF00780 CNH: CNH domain; Int 97.3 0.2 4.3E-06 54.1 27.5 231 428-685 5-267 (275)
373 PF03178 CPSF_A: CPSF A subuni 97.2 0.13 2.8E-06 56.9 25.6 220 440-669 2-262 (321)
374 COG3386 Gluconolactonase [Carb 97.1 0.14 3.1E-06 55.1 22.9 198 850-1061 31-253 (307)
375 PF14655 RAB3GAP2_N: Rab3 GTPa 97.0 0.35 7.6E-06 54.0 25.7 82 553-638 309-408 (415)
376 PF03178 CPSF_A: CPSF A subuni 97.0 0.087 1.9E-06 58.3 21.5 216 380-624 3-261 (321)
377 PF04841 Vps16_N: Vps16, N-ter 96.9 0.43 9.3E-06 54.3 26.6 210 424-655 34-272 (410)
378 KOG4640 Anaphase-promoting com 96.9 0.0034 7.5E-08 69.9 9.3 94 356-472 20-114 (665)
379 PRK10115 protease 2; Provision 96.9 0.85 1.8E-05 55.8 30.2 245 419-674 127-396 (686)
380 PF14727 PHTB1_N: PTHB1 N-term 96.8 1.2 2.7E-05 49.9 30.7 289 788-1115 37-372 (418)
381 COG3386 Gluconolactonase [Carb 96.8 0.39 8.5E-06 51.7 23.5 224 361-617 29-274 (307)
382 PF08553 VID27: VID27 cytoplas 96.8 0.068 1.5E-06 64.0 19.3 148 896-1049 492-646 (794)
383 PF08553 VID27: VID27 cytoplas 96.8 0.039 8.5E-07 66.0 17.0 145 475-627 492-646 (794)
384 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.091 2E-06 45.7 14.6 102 421-534 2-109 (111)
385 PF14655 RAB3GAP2_N: Rab3 GTPa 96.8 0.34 7.3E-06 54.1 23.0 93 423-516 6-117 (415)
386 PHA02713 hypothetical protein; 96.7 0.12 2.6E-06 61.6 20.8 199 896-1118 303-547 (557)
387 smart00320 WD40 WD40 repeats. 96.7 0.0032 7E-08 43.4 4.9 39 917-955 2-40 (40)
388 KOG2395 Protein involved in va 96.7 0.043 9.4E-07 60.1 15.0 201 418-626 276-498 (644)
389 PF05694 SBP56: 56kDa selenium 96.6 0.72 1.6E-05 50.7 23.6 149 521-669 87-274 (461)
390 PRK10115 protease 2; Provision 96.6 2.8 6.1E-05 51.3 35.7 244 358-631 128-397 (686)
391 TIGR03074 PQQ_membr_DH membran 96.6 3.1 6.7E-05 51.0 39.4 64 998-1061 641-721 (764)
392 PF10647 Gmad1: Lipoprotein Lp 96.5 0.83 1.8E-05 48.1 23.5 147 886-1042 25-187 (253)
393 PF05096 Glu_cyclase_2: Glutam 96.5 0.92 2E-05 46.8 22.5 186 845-1039 46-249 (264)
394 PF07995 GSDH: Glucose / Sorbo 96.5 0.91 2E-05 50.1 24.4 242 846-1097 4-330 (331)
395 KOG4640 Anaphase-promoting com 96.5 0.012 2.6E-07 65.8 9.3 92 843-936 20-114 (665)
396 PF10647 Gmad1: Lipoprotein Lp 96.5 0.37 8.1E-06 50.8 20.4 145 844-995 24-183 (253)
397 KOG4441 Proteins containing BT 96.5 0.27 5.9E-06 58.3 21.3 227 427-665 282-534 (571)
398 KOG4499 Ca2+-binding protein R 96.3 0.6 1.3E-05 46.0 18.4 98 781-894 162-263 (310)
399 smart00320 WD40 WD40 repeats. 96.2 0.012 2.7E-07 40.3 5.3 39 874-913 2-40 (40)
400 KOG2395 Protein involved in va 96.1 0.092 2E-06 57.7 13.3 144 899-1049 348-499 (644)
401 KOG1898 Splicing factor 3b, su 96.0 5.4 0.00012 48.4 32.1 104 849-957 939-1048(1205)
402 PF14783 BBS2_Mid: Ciliary BBS 96.0 0.26 5.7E-06 43.0 13.2 102 359-490 2-109 (111)
403 TIGR03074 PQQ_membr_DH membran 96.0 5.8 0.00013 48.7 39.6 200 479-678 196-483 (764)
404 PHA02713 hypothetical protein; 96.0 0.64 1.4E-05 55.4 21.4 222 441-674 273-535 (557)
405 COG3204 Uncharacterized protei 96.0 0.9 2E-05 46.8 18.8 196 774-998 83-304 (316)
406 PF07995 GSDH: Glucose / Sorbo 95.9 3.5 7.7E-05 45.5 28.3 58 610-667 271-330 (331)
407 KOG2079 Vacuolar assembly/sort 95.9 0.1 2.2E-06 62.4 13.6 105 429-539 98-203 (1206)
408 PF15390 DUF4613: Domain of un 95.8 0.16 3.4E-06 57.0 13.8 158 884-1052 19-188 (671)
409 PF14727 PHTB1_N: PTHB1 N-term 95.7 4.8 0.0001 45.3 31.1 278 365-675 33-363 (418)
410 KOG4441 Proteins containing BT 95.7 1.4 3.1E-05 52.3 22.3 235 853-1113 283-555 (571)
411 PF05096 Glu_cyclase_2: Glutam 95.6 2 4.4E-05 44.3 19.9 193 775-995 43-248 (264)
412 PF15390 DUF4613: Domain of un 95.6 3.6 7.8E-05 46.7 23.0 126 352-495 52-186 (671)
413 PF12894 Apc4_WD40: Anaphase-p 95.6 0.045 9.7E-07 39.6 5.7 34 417-451 10-43 (47)
414 KOG2079 Vacuolar assembly/sort 95.5 0.044 9.6E-07 65.3 8.8 99 371-494 101-202 (1206)
415 PF12894 Apc4_WD40: Anaphase-p 95.5 0.037 8E-07 40.0 5.2 33 356-390 11-43 (47)
416 PRK13684 Ycf48-like protein; P 95.5 5.3 0.00011 44.2 29.1 158 927-1102 172-331 (334)
417 PRK13684 Ycf48-like protein; P 95.4 5.5 0.00012 44.1 27.5 156 884-1049 172-330 (334)
418 PF14870 PSII_BNR: Photosynthe 95.4 4.8 0.0001 43.2 31.9 151 842-1003 143-301 (302)
419 KOG2444 WD40 repeat protein [G 95.3 0.047 1E-06 53.6 6.8 104 855-958 70-178 (238)
420 PF05694 SBP56: 56kDa selenium 95.3 1.6 3.5E-05 48.1 18.7 190 849-1039 135-392 (461)
421 KOG2444 WD40 repeat protein [G 95.3 0.026 5.7E-07 55.3 4.9 68 992-1059 73-141 (238)
422 COG3204 Uncharacterized protei 95.2 1.5 3.4E-05 45.2 17.2 170 923-1103 81-264 (316)
423 TIGR03118 PEPCTERM_chp_1 conse 94.8 5.4 0.00012 41.7 19.8 211 886-1105 24-282 (336)
424 KOG4499 Ca2+-binding protein R 94.6 4.9 0.00011 39.9 18.2 218 363-609 21-264 (310)
425 PF10168 Nup88: Nuclear pore c 94.6 1.5 3.3E-05 53.1 18.3 76 978-1053 85-182 (717)
426 COG4257 Vgb Streptogramin lyas 94.5 3.6 7.8E-05 41.9 17.3 193 886-1105 63-265 (353)
427 COG3823 Glutamine cyclotransfe 94.1 2.2 4.7E-05 41.5 14.3 176 854-1038 55-247 (262)
428 PF14870 PSII_BNR: Photosynthe 94.0 10 0.00022 40.7 29.4 232 845-1099 63-301 (302)
429 KOG4659 Uncharacterized conser 94.0 23 0.00049 44.4 32.9 23 775-797 660-682 (1899)
430 PF12234 Rav1p_C: RAVE protein 93.9 1.5 3.3E-05 51.5 15.9 112 465-584 31-155 (631)
431 PF12234 Rav1p_C: RAVE protein 93.9 1.5 3.1E-05 51.7 15.6 123 879-1006 24-156 (631)
432 PHA03098 kelch-like protein; P 93.9 2.6 5.6E-05 50.6 18.7 151 521-674 343-513 (534)
433 KOG2280 Vacuolar assembly/sort 93.7 3.4 7.4E-05 48.2 17.5 233 843-1115 83-327 (829)
434 PHA03098 kelch-like protein; P 93.6 3.4 7.4E-05 49.5 19.2 195 428-632 293-515 (534)
435 KOG2280 Vacuolar assembly/sort 93.6 4.1 8.8E-05 47.7 17.8 186 864-1063 64-259 (829)
436 KOG1898 Splicing factor 3b, su 93.4 25 0.00054 43.2 32.5 179 908-1105 854-1051(1205)
437 COG4590 ABC-type uncharacteriz 93.0 2.4 5.2E-05 46.0 14.1 160 842-1011 219-391 (733)
438 KOG2247 WD40 repeat-containing 92.9 0.019 4E-07 62.3 -1.5 241 780-1055 38-285 (615)
439 KOG3630 Nuclear pore complex, 92.7 1 2.2E-05 54.7 11.9 146 843-994 100-260 (1405)
440 PF10214 Rrn6: RNA polymerase 92.5 30 0.00066 43.2 25.4 167 883-1052 78-278 (765)
441 COG4257 Vgb Streptogramin lyas 92.4 14 0.00031 37.8 21.0 196 780-1007 107-306 (353)
442 PF10168 Nup88: Nuclear pore c 92.4 22 0.00047 43.5 23.0 72 885-958 85-180 (717)
443 TIGR03118 PEPCTERM_chp_1 conse 92.4 16 0.00035 38.3 20.8 207 846-1060 25-289 (336)
444 PLN00033 photosystem II stabil 92.2 24 0.00052 39.8 27.1 152 887-1047 241-396 (398)
445 PHA02790 Kelch-like protein; P 92.1 6.7 0.00014 46.0 18.2 183 854-1053 271-473 (480)
446 PLN00033 photosystem II stabil 92.1 13 0.00028 41.9 19.3 148 844-1003 239-396 (398)
447 KOG1900 Nuclear pore complex, 91.8 7.3 0.00016 48.8 17.9 147 904-1054 96-277 (1311)
448 PF02333 Phytase: Phytase; In 91.5 26 0.00056 38.8 24.6 197 479-681 70-299 (381)
449 PF02333 Phytase: Phytase; In 91.3 24 0.00052 39.0 19.7 195 896-1104 67-292 (381)
450 KOG3630 Nuclear pore complex, 91.3 1.9 4.2E-05 52.4 12.1 146 465-616 102-261 (1405)
451 TIGR02604 Piru_Ver_Nterm putat 91.2 5.2 0.00011 45.0 15.5 150 885-1041 14-204 (367)
452 PF10313 DUF2415: Uncharacteri 91.2 0.71 1.5E-05 32.3 5.1 32 419-450 1-35 (43)
453 PHA02790 Kelch-like protein; P 91.2 9 0.0002 44.9 17.9 186 429-631 271-473 (480)
454 COG3292 Predicted periplasmic 91.2 16 0.00035 41.6 18.1 279 351-668 159-443 (671)
455 KOG2377 Uncharacterized conser 91.0 2.5 5.4E-05 46.1 11.5 125 354-498 64-188 (657)
456 PF11725 AvrE: Pathogenicity f 91.0 14 0.0003 47.8 19.3 135 902-1046 618-768 (1774)
457 KOG1916 Nuclear protein, conta 90.8 0.37 8E-06 56.6 5.5 200 842-1051 131-375 (1283)
458 TIGR02604 Piru_Ver_Nterm putat 90.7 6.3 0.00014 44.4 15.6 103 929-1039 15-142 (367)
459 PF03022 MRJP: Major royal jel 90.5 28 0.00061 37.4 20.0 167 488-660 35-253 (287)
460 PF03022 MRJP: Major royal jel 90.3 25 0.00053 37.9 18.7 190 846-1039 3-254 (287)
461 KOG1916 Nuclear protein, conta 90.2 0.64 1.4E-05 54.7 6.8 164 355-544 131-328 (1283)
462 PRK14131 N-acetylneuraminic ac 90.1 38 0.00082 38.3 21.4 40 622-663 314-353 (376)
463 PF05935 Arylsulfotrans: Aryls 90.0 10 0.00022 44.4 16.7 121 933-1062 153-313 (477)
464 PF10313 DUF2415: Uncharacteri 89.9 0.96 2.1E-05 31.7 4.9 33 357-389 1-35 (43)
465 PF08728 CRT10: CRT10; InterP 89.6 16 0.00035 43.7 17.6 118 419-539 101-246 (717)
466 PF13449 Phytase-like: Esteras 89.6 37 0.0008 37.4 22.8 163 884-1050 19-249 (326)
467 COG1520 FOG: WD40-like repeat 89.4 42 0.00092 37.8 23.5 197 432-638 70-278 (370)
468 KOG1983 Tomosyn and related SN 89.3 4.7 0.0001 51.1 14.1 69 979-1054 200-268 (993)
469 COG1520 FOG: WD40-like repeat 88.8 47 0.001 37.5 22.1 202 851-1061 65-279 (370)
470 KOG4460 Nuclear pore complex, 88.8 8.2 0.00018 43.1 13.4 46 1070-1115 164-211 (741)
471 TIGR03606 non_repeat_PQQ dehyd 88.2 34 0.00073 39.2 18.4 108 884-995 29-163 (454)
472 TIGR03548 mutarot_permut cycli 88.2 46 0.00099 36.7 22.6 69 522-590 125-199 (323)
473 PF07676 PD40: WD40-like Beta 88.1 1.8 3.9E-05 29.9 5.6 32 353-384 5-38 (39)
474 COG5167 VID27 Protein involved 87.7 19 0.00041 40.2 15.2 151 467-627 470-631 (776)
475 PF13449 Phytase-like: Esteras 87.3 31 0.00066 38.1 17.5 160 775-944 18-231 (326)
476 COG3823 Glutamine cyclotransfe 87.1 33 0.00071 33.8 16.2 173 479-660 58-247 (262)
477 PF08728 CRT10: CRT10; InterP 86.6 3.6 7.9E-05 48.9 10.0 134 359-494 103-245 (717)
478 PF14781 BBS2_N: Ciliary BBSom 85.9 19 0.00041 32.9 11.8 115 934-1058 5-133 (136)
479 PF14761 HPS3_N: Hermansky-Pud 85.5 42 0.0009 33.7 15.1 58 846-905 20-79 (215)
480 KOG1983 Tomosyn and related SN 85.1 22 0.00048 45.3 16.6 36 355-391 34-69 (993)
481 COG3292 Predicted periplasmic 85.0 80 0.0017 36.3 24.5 139 418-568 164-306 (671)
482 COG5290 IkappaB kinase complex 84.9 87 0.0019 37.4 19.1 99 780-901 250-353 (1243)
483 PRK13613 lipoprotein LpqB; Pro 84.5 71 0.0015 38.3 19.4 192 845-1044 364-576 (599)
484 PF07569 Hira: TUP1-like enhan 83.6 4.6 0.0001 41.3 8.1 74 935-1008 18-97 (219)
485 PF07569 Hira: TUP1-like enhan 83.2 4.6 0.0001 41.3 8.0 72 1028-1103 18-96 (219)
486 PF11725 AvrE: Pathogenicity f 82.9 95 0.0021 40.8 20.0 149 355-540 361-517 (1774)
487 smart00036 CNH Domain found in 82.5 79 0.0017 34.4 24.6 238 784-1058 9-278 (302)
488 TIGR03548 mutarot_permut cycli 81.8 88 0.0019 34.4 18.8 70 562-633 123-199 (323)
489 PF14761 HPS3_N: Hermansky-Pud 81.8 60 0.0013 32.6 15.3 50 611-663 29-80 (215)
490 PF09862 DUF2089: Protein of u 81.8 7.8 0.00017 34.2 7.5 80 2-98 32-113 (113)
491 PF12657 TFIIIC_delta: Transcr 81.7 13 0.00029 36.4 10.4 37 1074-1110 88-130 (173)
492 PF05935 Arylsulfotrans: Aryls 81.7 83 0.0018 36.8 18.6 155 478-639 116-312 (477)
493 PRK13615 lipoprotein LpqB; Pro 81.5 1.2E+02 0.0026 35.9 21.4 154 887-1051 336-503 (557)
494 TIGR03547 muta_rot_YjhT mutatr 81.4 95 0.0021 34.6 22.2 42 531-572 168-210 (346)
495 COG5276 Uncharacterized conser 81.3 75 0.0016 33.3 27.5 186 330-546 56-248 (370)
496 KOG1900 Nuclear pore complex, 81.0 16 0.00034 46.1 12.3 167 346-540 68-273 (1311)
497 PF12657 TFIIIC_delta: Transcr 81.0 7.4 0.00016 38.2 8.3 31 419-449 86-122 (173)
498 COG5167 VID27 Protein involved 79.7 31 0.00066 38.7 12.7 142 429-585 478-632 (776)
499 PLN02193 nitrile-specifier pro 79.3 1.4E+02 0.0029 35.1 23.4 151 479-633 231-415 (470)
500 KOG2247 WD40 repeat-containing 79.2 0.47 1E-05 52.0 -0.8 139 330-493 42-186 (615)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-69 Score=540.89 Aligned_cols=491 Identities=22% Similarity=0.327 Sum_probs=407.8
Q ss_pred hHHHHHHHHHHhhhcCHHHHHHHHHHhcCCCcc---HHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHH
Q 001163 5 SRELVFLILQFLDEEKFKETVHKLEQDSGFFFN---MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1134)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~l~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1134)
+.|++||++|+|+.+||.+|+.+||.|+|+.+. .+.|.++++.|+|++++..+..+. .++......+.|++.||+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999885 899999999999999999998873 3334445559999999999
Q ss_pred HHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccccccccCCCChhHHHHHHHHHHhhcccCcCccccc
Q 001163 82 LEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKL 161 (1134)
Q Consensus 82 lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~i~~~~~~~~~~ 161 (1134)
||++..|....|+.+||+++.++. ++.++|++|..-|..++.....+...-......|.+|+++|+++|||+++
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~il----- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNIL----- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhc-----
Confidence 999999999999999999998886 58999999988777655443332222122456899999999999999999
Q ss_pred cCCCCchHHHHHHHHHHHHHHHhcCCCCCCCCCcccceeccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCC
Q 001163 162 QFPSLKNSRLRTLINQSLNWQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQP 241 (1134)
Q Consensus 162 ~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 241 (1134)
+|++||++||+||++||+++|.|||+ .+..|||.||.|++ .++| ++.
T Consensus 170 ----lP~rRLehLl~qAv~~Q~d~cvyhns-ldsvsll~Dh~c~~---------------~qip-------------~qt 216 (519)
T KOG0293|consen 170 ----LPKRRLEHLLEQAVKYQRDSCVYHNS-LDSVSLLSDHFCGR---------------LQIP-------------SQT 216 (519)
T ss_pred ----CChHHHHHHHHHHHHHHHhHhHHhcc-cchhhhhhhcccCc---------------ccCC-------------chh
Confidence 99999999999999999999999995 55589999999998 2233 110
Q ss_pred CCCCCcccccccccCCCCCCCCCCCCCCccccCCCchhhhhcCCCCCCCCCCcccccccChHhHhhcCCCCCCCcccccc
Q 001163 242 TPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTADSEHVLKRSRPFGISDEVNNL 321 (1134)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~vw~~ 321 (1134)
.++|. .|+||||
T Consensus 217 -------------------------------------~qil~-----------------------------~htdEVW-- 228 (519)
T KOG0293|consen 217 -------------------------------------WQILQ-----------------------------DHTDEVW-- 228 (519)
T ss_pred -------------------------------------hhhHh-----------------------------hCCCcEE--
Confidence 13444 9999999
Q ss_pred ccceeeeEeCCCCCCcccccCCCCCceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeee
Q 001163 322 SVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWE 401 (1134)
Q Consensus 322 ~~~i~~~~~s~~~~~l~~~~~d~~~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~ 401 (1134)
-+.||++|+| ||+++.|.+..||++.....+. +.
T Consensus 229 ---------------------------------------fl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~k-----l~- 262 (519)
T KOG0293|consen 229 ---------------------------------------FLQFSHNGKY-LASASKDSTAIIWIVVYDVHFK-----LK- 262 (519)
T ss_pred ---------------------------------------EEEEcCCCee-EeeccCCceEEEEEEecCccee-----ee-
Confidence 5789999996 5999999999999987654421 11
Q ss_pred ccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEE
Q 001163 402 LGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVV 481 (1134)
Q Consensus 402 ~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~ 481 (1134)
..+.+|..+|..+.||||.+||++|+.|..+.+||+.+|...... -.+|...+.+++|.|||. .++
T Consensus 263 ----------~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y--~~~~~~S~~sc~W~pDg~--~~V 328 (519)
T KOG0293|consen 263 ----------KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLY--PSGLGFSVSSCAWCPDGF--RFV 328 (519)
T ss_pred ----------eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhc--ccCcCCCcceeEEccCCc--eeE
Confidence 137899999999999999999999999999999999999876532 234678999999999999 799
Q ss_pred EEeCCCeEEEEECCCCceeEEecCCC-cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEEC
Q 001163 482 TCGEDRVIKVWDAVTGTKQYIFEGHE-SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYS 560 (1134)
Q Consensus 482 s~s~d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s 560 (1134)
+|+.|+++..||+ .|+.+..+++-. ..|.++++. .||.++++.+.|..|++++.++...+. +.....+|++++.|
T Consensus 329 ~Gs~dr~i~~wdl-Dgn~~~~W~gvr~~~v~dlait--~Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS 404 (519)
T KOG0293|consen 329 TGSPDRTIIMWDL-DGNILGNWEGVRDPKVHDLAIT--YDGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSIS 404 (519)
T ss_pred ecCCCCcEEEecC-CcchhhcccccccceeEEEEEc--CCCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEc
Confidence 9999999999995 566666666543 558888874 566899999999999999987655443 33345689999999
Q ss_pred cCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCc-eEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeEEEec
Q 001163 561 ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS-VGVVQFDT-TKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638 (1134)
Q Consensus 561 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~-v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (1134)
.|++++++.-.+ ..+++||++..+.++.+.||..+. +..-||.. +..++++|++|+.|+||+..+|+++..+.+
T Consensus 405 ~d~k~~LvnL~~----qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG 480 (519)
T KOG0293|consen 405 KDGKLALVNLQD----QEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG 480 (519)
T ss_pred CCCcEEEEEccc----CeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC
Confidence 999999887653 359999999999999999997643 33345654 448999999999999999999999999996
Q ss_pred CCCCCCcceEEEcC-CCcEEEEEECCCcEEEEEccC
Q 001163 639 DGGLQASPCIRFNK-EGILLAVSTNDNGIKILANAD 673 (1134)
Q Consensus 639 ~~~~~~v~~v~~sp-~~~~l~~~~~dg~i~iw~~~~ 673 (1134)
| ...|+||+|+| +..++|++++||+||||....
T Consensus 481 H--s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 481 H--SKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred C--cceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 6 67999999999 568999999999999998754
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.7e-63 Score=477.87 Aligned_cols=486 Identities=21% Similarity=0.320 Sum_probs=397.4
Q ss_pred hHHHHHHHHHHhhhcCHHHHHHHHHHhcCCCcc----HHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHH
Q 001163 5 SRELVFLILQFLDEEKFKETVHKLEQDSGFFFN----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1134)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~l~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 80 (1134)
..||||||+|||+|+.+++++++||+|+++++| ++.|.+.|.+|+||.+++.+.+| .+|+. -+..+|+|.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL-KLP~k-----kL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL-KLPDK-----KLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc-cCchh-----HHHHHHHHH
Confidence 569999999999999999999999999999998 89999999999999999999999 55554 678899999
Q ss_pred HHHHHhcCCHHHHHHHHHhh--cccccccCHHHHHHHHHHhcccccccccccccCCC-ChhHH-HHHHHHHHhhcccCcC
Q 001163 81 YLEALDKRDRAKAVEILVKD--LKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYGD-TKSAR-GIMLAELKKLIEANPL 156 (1134)
Q Consensus 81 ~lEll~~~~~~~a~~~l~~~--l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-~~~~R-~~l~~~l~~~i~~~~~ 156 (1134)
.|||+|.+|...|..+||+. +.-|+..+++||.+|+.||..+.+++.+. |++ +++.| ..+...|...+.
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~Ea---Y~dssKEkrRa~IAQ~ls~EV~---- 153 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREA---YGDSSKEKRRAVIAQALSGEVH---- 153 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhh---cCcchHHHHHHHHHHHhcCceE----
Confidence 99999999999999999974 55566778999999999999999998887 444 45544 555555544333
Q ss_pred ccccccCCCCchHHHHHHHHHHHHHHHhcCCCCCCCCCcccceeccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCC
Q 001163 157 FRDKLQFPSLKNSRLRTLINQSLNWQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAH 236 (1134)
Q Consensus 157 ~~~~~~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1134)
.+||+||+.||+|||+||+.++++|. + ..|+
T Consensus 154 --------VVppSRLlaLlGQaLKWQqHQGLLPP---G---------------------------------t~iD----- 184 (508)
T KOG0275|consen 154 --------VVPPSRLLALLGQALKWQQHQGLLPP---G---------------------------------TTID----- 184 (508)
T ss_pred --------EcChHHHHHHHHHHhhhHhhcCCCCC---C---------------------------------ceee-----
Confidence 29999999999999999999997762 1 1122
Q ss_pred CCCCCCCCCCcccccccccCCCCCCCCCCCCCCccccCCCchhhhhcCCCCCCCCCCcccccccChHhHhhcCCCCCCCc
Q 001163 237 GPFQPTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTADSEHVLKRSRPFGISD 316 (1134)
Q Consensus 237 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 316 (1134)
.|++..+ +...+-+.+|.+-...|+
T Consensus 185 -LFRGkAA---------~K~~~Ee~~Pt~l~r~IK--------------------------------------------- 209 (508)
T KOG0275|consen 185 -LFRGKAA---------MKDQEEERYPTQLARSIK--------------------------------------------- 209 (508)
T ss_pred -eccchhh---------hhhhHhhhchHHhhhhee---------------------------------------------
Confidence 5555432 111111222222222222
Q ss_pred cccccccceeeeEeCCCCCCcccccCCCCCceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeec
Q 001163 317 EVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKS 396 (1134)
Q Consensus 317 ~vw~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~ 396 (1134)
|+..+.+.|..|||||+| +++|+.||.|.+||..+|+.....+
T Consensus 210 ------------------------------------Fg~KSh~EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLk 252 (508)
T KOG0275|consen 210 ------------------------------------FGQKSHVECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLK 252 (508)
T ss_pred ------------------------------------cccccchhheeeCCCCce-Eeeccccceeeeehhccchhhhhhh
Confidence 334455679999999996 5899999999999999998654322
Q ss_pred eeeeeccccCccccc-cccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeee-cCCCCEEEEEEecC
Q 001163 397 FKVWELGACSMPLQA-SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYP 474 (1134)
Q Consensus 397 ~~~~~~~~~~~~~~~-~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~~ 474 (1134)
+++ ..+.-+..+|.|+.||.|...||+|+.||.|+||.+.+|.+++. +. .|+..|+|+.|+.|
T Consensus 253 ------------YQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRr---FdrAHtkGvt~l~FSrD 317 (508)
T KOG0275|consen 253 ------------YQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRR---FDRAHTKGVTCLSFSRD 317 (508)
T ss_pred ------------hhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHH---hhhhhccCeeEEEEccC
Confidence 222 23566889999999999999999999999999999999999884 44 89999999999999
Q ss_pred CCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC--C
Q 001163 475 NKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG--H 552 (1134)
Q Consensus 475 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~ 552 (1134)
+. .+++++.|.++++.-+.+|++++.|+||.+.|+...| .++|..+++++.||+|++|+..+.++...+...+ .
T Consensus 318 ~S--qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~ 393 (508)
T KOG0275|consen 318 NS--QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDY 393 (508)
T ss_pred cc--hhhcccccceEEEeccccchhHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcc
Confidence 99 5899999999999999999999999999999999988 4566999999999999999999998888776544 3
Q ss_pred CeeEEEECcCC-CEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCC--CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001163 553 SSTMMAYSADG-ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG--KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 629 (1134)
Q Consensus 553 ~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 629 (1134)
+|.++-.-|.+ ..+++|.. ..++++.++. |+.++.|.... ++...+.+.+|.|.++++.++|+.++.+...+
T Consensus 394 ~vnsv~~~PKnpeh~iVCNr----sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~s 468 (508)
T KOG0275|consen 394 PVNSVILLPKNPEHFIVCNR----SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLS 468 (508)
T ss_pred cceeEEEcCCCCceEEEEcC----CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeec
Confidence 77787777754 56666643 4468888875 77888776532 23566778999999999999999999999999
Q ss_pred CceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEE
Q 001163 630 VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA 670 (1134)
Q Consensus 630 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~ 670 (1134)
|++..++..| ...+..++-+|..+.+|+-+.||.+++|.
T Consensus 469 G~LE~tl~Vh--EkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 469 GKLERTLPVH--EKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred Cceeeeeecc--cccccccccCcccchhhhhcccchhhhcC
Confidence 9999999876 55788999999999999999999999994
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-57 Score=487.64 Aligned_cols=577 Identities=18% Similarity=0.237 Sum_probs=482.6
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEecCCccce-eeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCC
Q 001163 362 MDFHPVQQILLVVGTNMGDVMLWEVGSRERI-AVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 440 (1134)
Q Consensus 362 v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg 440 (1134)
++||++|+. |++...| .|.+-|+.++... .. .-......+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~~-L~t~~~d-~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQH-LYTACGD-RVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCCE-EEEecCc-eEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 899999995 4665443 4888899988762 21 1245678999999999999999999999
Q ss_pred EEEEEEccCCceeeeeeeeec-CCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccC
Q 001163 441 IVHLYTYHGGDELRNHLEIEA-HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKE 519 (1134)
Q Consensus 441 ~v~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 519 (1134)
.+++|++.+++.++ .+.. |++||.-++|+|.+. ++++|+.|+.++|||+..+.+.+.|+||.+.|.++.|++..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998776 5666 999999999999997 89999999999999999999999999999999999999998
Q ss_pred CccEEEEecCCCcEEEEecCCCCc-eeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCC
Q 001163 520 NIQFIFSTATDGKIKAWLYDNLGS-RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK 598 (1134)
Q Consensus 520 ~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 598 (1134)
+...|++|..|+++++||+..... ...+..|.+.|++++|++|+..+++++.|+ .+.+||+.+.+..++++..+
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDk----vi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDK----VIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCc----EEEEeehhhhhhhheechhh-
Confidence 888899999999999999985544 667788899999999999999999998754 69999998877777776654
Q ss_pred CceEEEEEcCC-----CCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163 599 RSVGVVQFDTT-----KNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (1134)
Q Consensus 599 ~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 673 (1134)
.+.++.+.++ +.+++++|.+|.+++||.++++.+........ ..+..+...+....++..+.|..+.++|..+
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~-~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDS-EEIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCc-hhhhcceeccccCceEEEEccceEEEEEccc
Confidence 5677777776 67999999999999999999988876654322 2356666666566677778899999999888
Q ss_pred CceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccce
Q 001163 674 GIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRI 753 (1134)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i 753 (1134)
. ...+.+-|...++.... .+ -++...++.+...+.+++
T Consensus 313 l-~i~k~ivG~ndEI~Dm~-----------------------------------~l------G~e~~~laVATNs~~lr~ 350 (775)
T KOG0319|consen 313 L-TIVKQIVGYNDEILDMK-----------------------------------FL------GPEESHLAVATNSPELRL 350 (775)
T ss_pred c-EEehhhcCCchhheeee-----------------------------------ec------CCccceEEEEeCCCceEE
Confidence 7 77888878777655321 11 123456777788889999
Q ss_pred eeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCccc
Q 001163 754 WKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILM 833 (1134)
Q Consensus 754 w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 833 (1134)
++..+.. +..+ .+|...|.++....+|.+|++++.|.++++|.++.. .+....
T Consensus 351 y~~~~~~----c~ii----~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~-------------------~~~~~~ 403 (775)
T KOG0319|consen 351 YTLPTSY----CQII----PGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNN-------------------CSKSLC 403 (775)
T ss_pred EecCCCc----eEEE----eCchhheeeeeecccCcEEEEecCCceEEEEEecCC-------------------cchhhh
Confidence 9776533 2221 469999999998888899999999999999988432 111111
Q ss_pred ccCCCCCCCCCCeeEEEEcCCC-CeEEEee-CCeEEEEEccCCe-----EE----EEecCCCCCeEEEEEcCCCCcEEEE
Q 001163 834 TNDISDTNPEDAVPCFALSKND-SYVMSAS-GGKISLFNMMTFK-----TM----TTFMPPPPAATFLAFHPQDNNIIAI 902 (1134)
Q Consensus 834 ~~~~~~~~h~~~v~~v~~s~dg-~~la~~s-dg~i~lwd~~~~~-----~~----~~~~~~~~~v~~l~~sp~~~~~la~ 902 (1134)
..... +|...|.+++++..+ .++++++ |.++++|++..-+ .. .+...|...|+|++++| +++++|+
T Consensus 404 ~a~~~--gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT 480 (775)
T KOG0319|consen 404 VAQAN--GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIAT 480 (775)
T ss_pred hhhhc--ccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEe
Confidence 11223 499999999998766 5788888 9999999996511 11 12346899999999999 8999999
Q ss_pred EeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceE
Q 001163 903 GMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTR 982 (1134)
Q Consensus 903 g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 982 (1134)
|+.|++.+||++..++...++.||...|+++.|++..+.|+|+|.|++|+||.+++. .+++.++||. ..|..
T Consensus 481 ~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f-----SClkT~eGH~---~aVlr 552 (775)
T KOG0319|consen 481 GSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF-----SCLKTFEGHT---SAVLR 552 (775)
T ss_pred cccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc-----eeeeeecCcc---ceeEe
Confidence 999999999999999999999999999999999999999999999999999999994 4899999998 48999
Q ss_pred EEEcCCCCEEEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCC
Q 001163 983 VQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTL 1052 (1134)
Q Consensus 983 l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~ 1052 (1134)
+.|-.+|+.|++ +.||-+++|++++++|+..+. .|.+.|++++-++++.+++||+.||.|.+|.=.|.
T Consensus 553 a~F~~~~~qliS~~adGliKlWnikt~eC~~tlD--~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 553 ASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD--AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred eeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh--hccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 999999999999 699999999999999999987 89999999999999999999999999999986664
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.1e-54 Score=462.49 Aligned_cols=578 Identities=14% Similarity=0.232 Sum_probs=467.0
Q ss_pred eEeCCCCCCcccccCCCC------Ccee-EEEee--cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeecee
Q 001163 328 VAYTPQSLGQSSYSTDDL------PKTV-VMTLN--QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFK 398 (1134)
Q Consensus 328 ~~~s~~~~~l~~~~~d~~------~~~~-~~~~~--h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~ 398 (1134)
++||++|+.|++...+.. +... +.... ....|++++.+||+.+ |++++..+.+++|++.+++.++.
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~-L~~a~rs~llrv~~L~tgk~irs---- 99 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEV-LVTASRSQLLRVWSLPTGKLIRS---- 99 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccE-EEEeeccceEEEEEcccchHhHh----
Confidence 569999999887766532 2222 22222 5679999999999985 57889999999999999977653
Q ss_pred eeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCce
Q 001163 399 VWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQL 478 (1134)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~ 478 (1134)
|+ .-|++||.-++|+|.|.+||+|+.|+.|+|||+..+.+.. .|.||.+.|.++.|.|+-...
T Consensus 100 -wK-------------a~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~ 162 (775)
T KOG0319|consen 100 -WK-------------AIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRW 162 (775)
T ss_pred -Hh-------------hccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchh
Confidence 21 2399999999999999999999999999999999988666 799999999999999998876
Q ss_pred EEEEEeCCCeEEEEECCCCce-eEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEE
Q 001163 479 SVVTCGEDRVIKVWDAVTGTK-QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMM 557 (1134)
Q Consensus 479 ~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 557 (1134)
+|++|..|+++++||+.+.+. +..+..|.+.|+++++.++ +..+++++.|..+.+||+...+....+.. ...+.++
T Consensus 163 lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d--~~~~ls~~RDkvi~vwd~~~~~~l~~lp~-ye~~E~v 239 (775)
T KOG0319|consen 163 LLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSED--SLELLSVGRDKVIIVWDLVQYKKLKTLPL-YESLESV 239 (775)
T ss_pred heeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccC--CceEEEeccCcEEEEeehhhhhhhheech-hhheeeE
Confidence 899999999999999996654 8889999999999998655 57899999999999999965444443332 2355666
Q ss_pred EECcC-----CCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce
Q 001163 558 AYSAD-----GARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL 632 (1134)
Q Consensus 558 ~~s~~-----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 632 (1134)
.+-++ +.++++.|. ++.+++||.+++++..+........+..+...+..+.+++...|..+.++|.++.+.
T Consensus 240 v~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i 315 (775)
T KOG0319|consen 240 VRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTI 315 (775)
T ss_pred EEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEE
Confidence 66665 668888875 446999999999887765544333466666667777888888899999999999998
Q ss_pred eEEEecCCCCCCcceEEE-cCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccc
Q 001163 633 LASIDADGGLQASPCIRF-NKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANAN 711 (1134)
Q Consensus 633 ~~~~~~~~~~~~v~~v~~-sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1134)
...+-+. .+.|..+.| .|+.++|+++++.+.+|+|+..+. ....+.+|...+....
T Consensus 316 ~k~ivG~--ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~--~c~ii~GH~e~vlSL~------------------- 372 (775)
T KOG0319|consen 316 VKQIVGY--NDEILDMKFLGPEESHLAVATNSPELRLYTLPTS--YCQIIPGHTEAVLSLD------------------- 372 (775)
T ss_pred ehhhcCC--chhheeeeecCCccceEEEEeCCCceEEEecCCC--ceEEEeCchhheeeee-------------------
Confidence 8888754 667888876 467799999999999999988776 3337888877665431
Q ss_pred cccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCC-ce
Q 001163 712 VGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSG-LA 790 (1134)
Q Consensus 712 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg-~~ 790 (1134)
....+..+++++.|+++++|.+++...... ......+|.+.|.+++++..+ ..
T Consensus 373 -----------------------~~~~g~llat~sKD~svilWr~~~~~~~~~---~~a~~~gH~~svgava~~~~~asf 426 (775)
T KOG0319|consen 373 -----------------------VWSSGDLLATGSKDKSVILWRLNNNCSKSL---CVAQANGHTNSVGAVAGSKLGASF 426 (775)
T ss_pred -----------------------ecccCcEEEEecCCceEEEEEecCCcchhh---hhhhhcccccccceeeecccCccE
Confidence 112356789999999999999954322221 122236799999999998765 57
Q ss_pred eeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEE
Q 001163 791 ILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLF 869 (1134)
Q Consensus 791 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lw 869 (1134)
+++++.|.++++|++...+.... ...+........|...|.+++++|+.+++|+|+ |.+.+||
T Consensus 427 fvsvS~D~tlK~W~l~~s~~~~~----------------~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW 490 (775)
T KOG0319|consen 427 FVSVSQDCTLKLWDLPKSKETAF----------------PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIW 490 (775)
T ss_pred EEEecCCceEEEecCCCcccccc----------------cceehhhHHHHhhcccccceEecCCCceEEecccccceeee
Confidence 88999999999999885211000 000000011124999999999999999999999 9999999
Q ss_pred EccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCC
Q 001163 870 NMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS 949 (1134)
Q Consensus 870 d~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg 949 (1134)
+++.++...++.+|...|.|+.|+| ..+.+|+++.|++|+||.+.+..++++|.||...|..+.|-.+|+.|+|++.||
T Consensus 491 ~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adG 569 (775)
T KOG0319|consen 491 DLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADG 569 (775)
T ss_pred cccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCC
Confidence 9999999999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCc
Q 001163 950 QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKL 1008 (1134)
Q Consensus 950 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~ 1008 (1134)
-|++|++++++ +......|. +.|-+++.++.+.++++ +.||.|.+|.-.+.
T Consensus 570 liKlWnikt~e-----C~~tlD~H~---DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 570 LIKLWNIKTNE-----CEMTLDAHN---DRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred cEEEEeccchh-----hhhhhhhcc---ceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 99999999976 666677776 57999999999999998 59999999965433
No 5
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.7e-51 Score=438.58 Aligned_cols=607 Identities=18% Similarity=0.281 Sum_probs=457.2
Q ss_pred eEeCCCCCCcccccCCC-----CCceeEEE--eecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeee
Q 001163 328 VAYTPQSLGQSSYSTDD-----LPKTVVMT--LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVW 400 (1134)
Q Consensus 328 ~~~s~~~~~l~~~~~d~-----~~~~~~~~--~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~ 400 (1134)
+.|+++|..+.+-..+. +.++...+ +.+...|++++.||+|.. +.+....|...+-++.....++..++
T Consensus 20 l~ft~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~l-llavdE~g~~~lvs~~~r~Vlh~f~f--- 95 (893)
T KOG0291|consen 20 LVFTKDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTL-LLAVDERGRALLVSLLSRSVLHRFNF--- 95 (893)
T ss_pred EEECCCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceE-EEEEcCCCcEEEEecccceeeEEEee---
Confidence 56777777666554332 23333344 458999999999999984 45668889999999888877765433
Q ss_pred eccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCce-----eeeeeeeecCCCCEEEEEEecCC
Q 001163 401 ELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDE-----LRNHLEIEAHVGSVNDLAFSYPN 475 (1134)
Q Consensus 401 ~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~-----~~~~~~l~~h~~~V~~v~~s~~~ 475 (1134)
..+|.|+.|||||+++|+|..+ .+.||....... .....+..+|-..|.++.|+.|.
T Consensus 96 -----------------k~~v~~i~fSPng~~fav~~gn-~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DS 157 (893)
T KOG0291|consen 96 -----------------KRGVGAIKFSPNGKFFAVGCGN-LLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDS 157 (893)
T ss_pred -----------------cCccceEEECCCCcEEEEEecc-eeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCC
Confidence 4689999999999999998654 599998754322 22334577899999999999999
Q ss_pred CceEEEEEeCCCeEEEEECCCCce--eEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCC
Q 001163 476 KQLSVVTCGEDRVIKVWDAVTGTK--QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHS 553 (1134)
Q Consensus 476 ~~~~l~s~s~d~~i~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 553 (1134)
+ +|++||.|.++++|+++..+. .+.+.+|...|.++-|.. +...+++.+.||.+.+|..+.......-....
T Consensus 158 r--~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~--~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd-- 231 (893)
T KOG0291|consen 158 R--LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGA--NSLDLYTVSKDGALFVWTCDLRPPELDKAEKD-- 231 (893)
T ss_pred c--eEEeccccceEEEEEeccccccceEeccCCCcceEEEEecc--CcceEEEEecCceEEEEEecCCCccccccccc--
Confidence 9 899999999999999987766 567889999998877744 44779999999999999876431111100000
Q ss_pred eeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcee
Q 001163 554 STMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL 633 (1134)
Q Consensus 554 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 633 (1134)
.+|.--.-.-.+++....-..|- +..+.+-......+++.+|++..+.|+++-..|...+|.+..-.++
T Consensus 232 -------~eg~~d~~~~~~~Eek~~~~~~~----k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~li 300 (893)
T KOG0291|consen 232 -------EEGSDDEEMDEDGEEKTHKIFWY----KTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLI 300 (893)
T ss_pred -------ccccccccccccchhhhcceEEE----EEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEE
Confidence 01100000000001000111221 1111222222247899999999999999999999999999999999
Q ss_pred EEEecCCCCCCcceEEEcCCCcEEEEEECC-CcEEEEEccCCceeEEEeccCcccccccchhhhhccccccccccccccc
Q 001163 634 ASIDADGGLQASPCIRFNKEGILLAVSTND-NGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANV 712 (1134)
Q Consensus 634 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1134)
+.+... ...|..++|+..|.+||.|+.. |.+.+|+..+..
T Consensus 301 h~LSis--~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs------------------------------------- 341 (893)
T KOG0291|consen 301 HSLSIS--DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES------------------------------------- 341 (893)
T ss_pred EEeecc--cceeeEEEecccCCEEEEcCCccceEEEEEeeccc-------------------------------------
Confidence 999865 4589999999999999998765 788899876541
Q ss_pred ccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceee
Q 001163 713 GTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAIL 792 (1134)
Q Consensus 713 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~ 792 (1134)
+.+..++|...+++++++|||++++
T Consensus 342 -------------------------------------------------------YVlKQQgH~~~i~~l~YSpDgq~ia 366 (893)
T KOG0291|consen 342 -------------------------------------------------------YVLKQQGHSDRITSLAYSPDGQLIA 366 (893)
T ss_pred -------------------------------------------------------eeeeccccccceeeEEECCCCcEEE
Confidence 1222345889999999999999999
Q ss_pred eeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEc
Q 001163 793 ALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNM 871 (1134)
Q Consensus 793 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~ 871 (1134)
+|+.||.|+|||.. +|.+... +.. |+..|+.+.|+.+|+.+++.+ ||+|+.||+
T Consensus 367 TG~eDgKVKvWn~~----------------------SgfC~vT-Fte--Hts~Vt~v~f~~~g~~llssSLDGtVRAwDl 421 (893)
T KOG0291|consen 367 TGAEDGKVKVWNTQ----------------------SGFCFVT-FTE--HTSGVTAVQFTARGNVLLSSSLDGTVRAWDL 421 (893)
T ss_pred eccCCCcEEEEecc----------------------CceEEEE-ecc--CCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence 99999999999644 4444432 444 999999999999999999999 999999999
Q ss_pred cCCeEEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCC-cEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCC
Q 001163 872 MTFKTMTTFMPPP-PAATFLAFHPQDNNIIAIGMEDS-SIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS 949 (1134)
Q Consensus 872 ~~~~~~~~~~~~~-~~v~~l~~sp~~~~~la~g~~dg-~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg 949 (1134)
..++..+++..+. -...|++..| .|.++..|+.|. .|+||++.+|+.+..+.||.++|.+++|+|++..|+|+|.|.
T Consensus 422 kRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk 500 (893)
T KOG0291|consen 422 KRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK 500 (893)
T ss_pred cccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccc
Confidence 9999999998654 3478899998 788998888886 899999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcccceeecc------------
Q 001163 950 QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVP------------ 1016 (1134)
Q Consensus 950 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~------------ 1016 (1134)
+|++||+-.... ....+.+. ..+..++|+|||+.||+ +.||+|.+||.+.+.....+..
T Consensus 501 TVRiW~if~s~~-~vEtl~i~-------sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D 572 (893)
T KOG0291|consen 501 TVRIWDIFSSSG-TVETLEIR-------SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETD 572 (893)
T ss_pred eEEEEEeeccCc-eeeeEeec-------cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccc
Confidence 999999876321 12233332 24889999999999999 5899999999987766544331
Q ss_pred ------CCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCccc---------------CC---------
Q 001163 1017 ------REASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYL---------------PT--------- 1066 (1134)
Q Consensus 1017 ------~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~---------------~~--------- 1066 (1134)
.......+.+++|+||.++++|+..+.|++|++.++-++.++..+... ..
T Consensus 573 ~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e 652 (893)
T KOG0291|consen 573 RITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTE 652 (893)
T ss_pred eeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccc
Confidence 111457899999999999999999999999999998776555422111 00
Q ss_pred -------------C----------CCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163 1067 -------------N----------PSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus 1067 -------------~----------h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
| -.-.|.-..+.|+| .++.++.++..| |.||.+.+
T Consensus 653 ~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsP-tgraFAaatTEG-l~IYsld~ 710 (893)
T KOG0291|consen 653 ESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSP-TGRAFAAATTEG-LLIYSLDT 710 (893)
T ss_pred cccccccccccCCccccCCccccccCceEEEEEEEECC-CcCeeeeecccc-eEEEecCC
Confidence 0 00123444779999 689999999998 67777643
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.4e-50 Score=415.37 Aligned_cols=569 Identities=14% Similarity=0.181 Sum_probs=440.0
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCC
Q 001163 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 440 (1134)
Q Consensus 361 ~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg 440 (1134)
-+.-.|.|..++.+.+ ..|.+-++++..... ++.+|...++-..|||.|.|+|+|...|
T Consensus 23 ~ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG 81 (603)
T KOG0318|consen 23 IIGGDPKGDNILYTNG--KSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSG 81 (603)
T ss_pred EeccCCCCCeEEEeCC--CEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcC
Confidence 3455677887777643 468888887765433 3788999999999999999999999999
Q ss_pred EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC--CC--eEEEEECCCCceeEEecCCCcCEEEEecc
Q 001163 441 IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE--DR--VIKVWDAVTGTKQYIFEGHESPVYSICPH 516 (1134)
Q Consensus 441 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~--d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 516 (1134)
.|+|||....+.+ ...+++.-.++|..++|+.|+++ |+..+. ++ .+.+|| +|.-+-.+.||...|+++.|-
T Consensus 82 ~vRIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~D--SG~SvGei~GhSr~ins~~~K 156 (603)
T KOG0318|consen 82 KVRIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWD--SGNSVGEITGHSRRINSVDFK 156 (603)
T ss_pred cEEEEeccCccee-eeeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEec--CCCccceeeccceeEeeeecc
Confidence 9999998764433 22357778899999999999995 444443 33 455565 888999999999999999997
Q ss_pred ccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEec--
Q 001163 517 HKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH-- 594 (1134)
Q Consensus 517 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-- 594 (1134)
++.. -.+++|++|++|.+|+-...+....+..|..-|.++.|+|||.++++.+.|+ .+.+||-.+|+.+..+.
T Consensus 157 psRP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDg----ki~iyDGktge~vg~l~~~ 231 (603)
T KOG0318|consen 157 PSRP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDG----KIYIYDGKTGEKVGELEDS 231 (603)
T ss_pred CCCc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCc----cEEEEcCCCccEEEEecCC
Confidence 7654 5799999999999997655555556666777999999999999999998755 59999999999999998
Q ss_pred -CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCC-CCCcceEEEcCCCcEEEEEECCCcEEEEEcc
Q 001163 595 -GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG-LQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (1134)
Q Consensus 595 -~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 672 (1134)
+|.. .|.+++|+||+..+++++.|.+++|||..+.+++.++..... ......+.|. ...|++.+.+|+|.+++..
T Consensus 232 ~aHkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~ 308 (603)
T KOG0318|consen 232 DAHKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPS 308 (603)
T ss_pred CCccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEeccc
Confidence 6665 899999999999999999999999999999999999875422 1122244454 5688899999999999887
Q ss_pred CCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccc
Q 001163 673 DGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSR 752 (1134)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 752 (1134)
+.. ..+.+.
T Consensus 309 d~~-~~~~i~---------------------------------------------------------------------- 317 (603)
T KOG0318|consen 309 DPS-VLKVIS---------------------------------------------------------------------- 317 (603)
T ss_pred CCC-hhheec----------------------------------------------------------------------
Confidence 662 332222
Q ss_pred eeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcc
Q 001163 753 IWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGIL 832 (1134)
Q Consensus 753 iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 832 (1134)
+|...|++++.+||+++|++++.||.|.-|+... |..
T Consensus 318 ---------------------GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~----------------------g~~ 354 (603)
T KOG0318|consen 318 ---------------------GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGS----------------------GTS 354 (603)
T ss_pred ---------------------ccccceeEEEEcCCCCEEEeeccCceEEEEecCC----------------------ccc
Confidence 4888999999999999999999999999996543 322
Q ss_pred cccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEE--ecCCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 001163 833 MTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTT--FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQ 910 (1134)
Q Consensus 833 ~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~ 910 (1134)
-. +.+.+|...|.+++.+..+.++.++-|.++++.++.....-.. ++ ......+++..+ ++.+++..+.++.+.
T Consensus 355 ~~--~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~-lg~QP~~lav~~-d~~~avv~~~~~iv~ 430 (603)
T KOG0318|consen 355 DR--LAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVK-LGSQPKGLAVLS-DGGTAVVACISDIVL 430 (603)
T ss_pred cc--cccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceee-cCCCceeEEEcC-CCCEEEEEecCcEEE
Confidence 22 3233599999999999888888777799999998854433222 12 222334888888 666666666555444
Q ss_pred EEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCC
Q 001163 911 IYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQT 990 (1134)
Q Consensus 911 iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~ 990 (1134)
+=+... +.... -.-...+++++|++..++.|+.|++|.||.+..++........ .|. ..+++++||||+.
T Consensus 431 l~~~~~---~~~~~-~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~---~h~---a~iT~vaySpd~~ 500 (603)
T KOG0318|consen 431 LQDQTK---VSSIP-IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLL---EHR---AAITDVAYSPDGA 500 (603)
T ss_pred EecCCc---ceeec-cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeee---ccc---CCceEEEECCCCc
Confidence 433322 11221 2233678999999999999999999999999987643322222 222 5799999999999
Q ss_pred EEEEE-eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCC
Q 001163 991 HLLAV-HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPS 1069 (1134)
Q Consensus 991 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~ 1069 (1134)
|||++ ..+.+.+||+.+.+.....- .-|+..|.+++||||..++|||+.|..|.||+++.......+. ..|.
T Consensus 501 yla~~Da~rkvv~yd~~s~~~~~~~w-~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik------nAH~ 573 (603)
T KOG0318|consen 501 YLAAGDASRKVVLYDVASREVKTNRW-AFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK------NAHL 573 (603)
T ss_pred EEEEeccCCcEEEEEcccCceeccee-eeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec------cccc
Confidence 99997 67999999999888732222 2589999999999999999999999999999998766542222 2477
Q ss_pred CCceeEEEEecCCCCCEEEEEecCCcEEEEeCC
Q 001163 1070 LRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus 1070 ~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~ 1102 (1134)
..|+.+.+. |...+++.+.|..|++|.++
T Consensus 574 ~gVn~v~wl----de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 574 GGVNSVAWL----DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred cCceeEEEe----cCceEEeccCcceeEEeccc
Confidence 889988544 57899999999999999875
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-48 Score=402.07 Aligned_cols=534 Identities=15% Similarity=0.231 Sum_probs=425.6
Q ss_pred ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001163 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (1134)
Q Consensus 354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 433 (1134)
+|...++-..|||.|. ++|+|...|+|+|||....+.+...+| .--.++|..++|++|++++
T Consensus 57 EH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef-----------------~v~aG~I~Di~Wd~ds~RI 118 (603)
T KOG0318|consen 57 EHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEF-----------------QVLAGPIKDISWDFDSKRI 118 (603)
T ss_pred cccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeee-----------------eecccccccceeCCCCcEE
Confidence 4899999999999998 569999999999999987665544443 3356799999999999999
Q ss_pred EEEeCC--C--EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcC
Q 001163 434 GVAYSK--H--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP 509 (1134)
Q Consensus 434 as~s~d--g--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~ 509 (1134)
++.+.. . .+.+|| +|..+. .+.||...|++++|-|.-.. .++||+.|++|.+++=.-.+...+++.|..-
T Consensus 119 ~avGEGrerfg~~F~~D--SG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskF 192 (603)
T KOG0318|consen 119 AAVGEGRERFGHVFLWD--SGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREHSKF 192 (603)
T ss_pred EEEecCccceeEEEEec--CCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeecccccccc
Confidence 887543 2 355565 444444 68999999999999987665 8999999999999997777778889999999
Q ss_pred EEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec---CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC
Q 001163 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD---APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 586 (1134)
Q Consensus 510 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 586 (1134)
|.++.|+| ||.++++++.||.|.+||-.+++....+. .|.+.|.+++|+||+..+++++.|+ .+++||..+
T Consensus 193 V~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk----t~KIWdVs~ 266 (603)
T KOG0318|consen 193 VNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK----TIKIWDVST 266 (603)
T ss_pred eeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc----eEEEEEeec
Confidence 99999965 46999999999999999999998888887 7888999999999999999998755 599999999
Q ss_pred CeeEEEecCCCC--CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC
Q 001163 587 GAVKRTYHGLGK--RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 664 (1134)
Q Consensus 587 ~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg 664 (1134)
.++++++..... .....+.|- +..|++.+.+|.|.+++......+..+.+| ...|+++..+|++.+|++|+.||
T Consensus 267 ~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GH--nK~ITaLtv~~d~~~i~SgsyDG 342 (603)
T KOG0318|consen 267 NSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGH--NKSITALTVSPDGKTIYSGSYDG 342 (603)
T ss_pred cceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheeccc--ccceeEEEEcCCCCEEEeeccCc
Confidence 999999876543 122233443 678999999999999999999988888865 77999999999999999999999
Q ss_pred cEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccc
Q 001163 665 GIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIA 744 (1134)
Q Consensus 665 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1134)
.|.-|+..++...
T Consensus 343 ~I~~W~~~~g~~~------------------------------------------------------------------- 355 (603)
T KOG0318|consen 343 HINSWDSGSGTSD------------------------------------------------------------------- 355 (603)
T ss_pred eEEEEecCCcccc-------------------------------------------------------------------
Confidence 9999998876210
Q ss_pred cccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcc
Q 001163 745 DEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQL 824 (1134)
Q Consensus 745 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 824 (1134)
.+...+|...|.+++.+..+. +++.+.|.++++.++....+..
T Consensus 356 ------------------------~~~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~------------ 398 (603)
T KOG0318|consen 356 ------------------------RLAGKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTK------------ 398 (603)
T ss_pred ------------------------ccccccccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccc------------
Confidence 011123888899998887666 7777778788887665322110
Q ss_pred cCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEe
Q 001163 825 WQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGM 904 (1134)
Q Consensus 825 ~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~ 904 (1134)
..... ......+++..+|+.+++.+.++.|.+..-.+ .+.+.. ..-...+++++| ++..+|+|+
T Consensus 399 -----~~~~~-------lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~--~~~~~~-~~y~~s~vAv~~-~~~~vaVGG 462 (603)
T KOG0318|consen 399 -----SEVVK-------LGSQPKGLAVLSDGGTAVVACISDIVLLQDQT--KVSSIP-IGYESSAVAVSP-DGSEVAVGG 462 (603)
T ss_pred -----cceee-------cCCCceeEEEcCCCCEEEEEecCcEEEEecCC--cceeec-cccccceEEEcC-CCCEEEEec
Confidence 00000 12334489999999888888877666665222 222222 345678999999 999999999
Q ss_pred CCCcEEEEEcccceE--EEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceE
Q 001163 905 EDSSIQIYNVRVDEV--KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTR 982 (1134)
Q Consensus 905 ~dg~i~iwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 982 (1134)
.|+.|+||.+..++. ...+..|.++|++++||||+.+||++...+.+.+||+.+.+... ..-..|. ..|.+
T Consensus 463 ~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~----~~w~FHt---akI~~ 535 (603)
T KOG0318|consen 463 QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT----NRWAFHT---AKINC 535 (603)
T ss_pred ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceec----ceeeeee---eeEEE
Confidence 999999999987653 34566799999999999999999999999999999999866311 1111122 57999
Q ss_pred EEEcCCCCEEEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecC
Q 001163 983 VQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAS 1050 (1134)
Q Consensus 983 l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~ 1050 (1134)
++|+|+..++|+ +-|..|.||+++.....-.+ ..+|...|+.+.|- |...|++.+.|..|++|++.
T Consensus 536 ~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~i-knAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 536 VAWSPNNKLVATGSLDTNVIIYSVKKPAKHIII-KNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEeCCCceEEEeccccceEEEEEccChhhheEe-ccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 999999999999 58999999999876655333 35788889999997 67789999999999999874
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.8e-49 Score=423.16 Aligned_cols=582 Identities=16% Similarity=0.239 Sum_probs=447.7
Q ss_pred cceeeeEeCCCCCCcccccCCC-------CCceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeee
Q 001163 323 VNILPVAYTPQSLGQSSYSTDD-------LPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVK 395 (1134)
Q Consensus 323 ~~i~~~~~s~~~~~l~~~~~d~-------~~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~ 395 (1134)
.+|.+++.||+|..+....-.+ ..+.+++.+..+.+|.|++|||||+. +|+|. ...+.||.......-.-.
T Consensus 56 ~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~~-fav~~-gn~lqiw~~P~~~~~~~~ 133 (893)
T KOG0291|consen 56 YNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGKF-FAVGC-GNLLQIWHAPGEIKNEFN 133 (893)
T ss_pred CceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCcE-EEEEe-cceeEEEecCcchhcccC
Confidence 4689999999998866554432 35667788889999999999999994 45543 457999997654321111
Q ss_pred ceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCC
Q 001163 396 SFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPN 475 (1134)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~ 475 (1134)
.| .....+.||-..|+++.||.|.++|++|+.|.+++||+++..+.+.. ..+.+|.+.|.++-|..+.
T Consensus 134 pF-----------vl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~-~~l~gHkd~VvacfF~~~~ 201 (893)
T KOG0291|consen 134 PF-----------VLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFT-YALNGHKDYVVACFFGANS 201 (893)
T ss_pred cc-----------eEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccce-EeccCCCcceEEEEeccCc
Confidence 11 12234789999999999999999999999999999999998776443 3689999999999999988
Q ss_pred CceEEEEEeCCCeEEEEECCC-----------------------Cce-----e------EEecCCCcCEEEEeccccCCc
Q 001163 476 KQLSVVTCGEDRVIKVWDAVT-----------------------GTK-----Q------YIFEGHESPVYSICPHHKENI 521 (1134)
Q Consensus 476 ~~~~l~s~s~d~~i~iwd~~~-----------------------~~~-----~------~~~~~h~~~v~~~~~~~~~~~ 521 (1134)
. -++|.+.||.+.+|.... ++. . +-+......|++.+|++..
T Consensus 202 ~--~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t-- 277 (893)
T KOG0291|consen 202 L--DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT-- 277 (893)
T ss_pred c--eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc--
Confidence 8 699999999999998761 111 1 1122234678888887765
Q ss_pred cEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCce
Q 001163 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSV 601 (1134)
Q Consensus 522 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 601 (1134)
+.|++|-..|...+|.+.....+..+.....+|..++|+..|.+++.++. .-+++.+|+..+...+.+..+|.. .+
T Consensus 278 ~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEsYVlKQQgH~~-~i 353 (893)
T KOG0291|consen 278 NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSESYVLKQQGHSD-RI 353 (893)
T ss_pred eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC---ccceEEEEEeeccceeeecccccc-ce
Confidence 78999999999999999998888888888889999999999999999874 356799999999988988899987 89
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEe
Q 001163 602 GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTV 681 (1134)
Q Consensus 602 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 681 (1134)
.+++++|||.++++|++||.|+|||..+|-++.++..| ...|+.+.|+..|+.+++.+-||+|+.||+... +..+++
T Consensus 354 ~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteH--ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRTf 430 (893)
T KOG0291|consen 354 TSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEH--TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRTF 430 (893)
T ss_pred eeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccC--CCceEEEEEEecCCEEEEeecCCeEEeeeeccc-ceeeee
Confidence 99999999999999999999999999999999999866 779999999999999999999999999999876 555555
Q ss_pred ccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCC
Q 001163 682 ESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITE 761 (1134)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~ 761 (1134)
..+
T Consensus 431 t~P----------------------------------------------------------------------------- 433 (893)
T KOG0291|consen 431 TSP----------------------------------------------------------------------------- 433 (893)
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 432
Q ss_pred ccceeccccCCccccccEEEEEEecCCceeeeeccCC-eEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCC
Q 001163 762 PSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNA-VHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDT 840 (1134)
Q Consensus 762 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 840 (1134)
......+++..|.|..+++|+.|. .|. +|++.+|+++.. +.|
T Consensus 434 -------------~p~QfscvavD~sGelV~AG~~d~F~If----------------------vWS~qTGqllDi-LsG- 476 (893)
T KOG0291|consen 434 -------------EPIQFSCVAVDPSGELVCAGAQDSFEIF----------------------VWSVQTGQLLDI-LSG- 476 (893)
T ss_pred -------------CceeeeEEEEcCCCCEEEeeccceEEEE----------------------EEEeecCeeeeh-hcC-
Confidence 234567889999999999998873 344 456777877765 555
Q ss_pred CCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCC-eEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce
Q 001163 841 NPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTF-KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE 918 (1134)
Q Consensus 841 ~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~ 918 (1134)
|+++|.+++|+|+|..|++++ |.+|++||+-.. ..+.++. +...+..++|+| +|+-||+++-||.|.+||...+.
T Consensus 477 -HEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrP-dG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 477 -HEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRP-DGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred -CCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcC-CCCeEEEEEecceEEEEEhhhce
Confidence 999999999999999999999 999999998654 3444454 778899999999 99999999999999999998765
Q ss_pred EEEeccC--------------------ccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCC-
Q 001163 919 VKTKLKG--------------------HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASA- 977 (1134)
Q Consensus 919 ~~~~l~~--------------------h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~- 977 (1134)
.+..+.+ .....+.+++|+||.++++||....|++|++.++-..+. .++...+.-.+
T Consensus 554 q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkk--fqiS~N~sLdg~ 631 (893)
T KOG0291|consen 554 QVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKK--FQISDNRSLDGV 631 (893)
T ss_pred eeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeee--EEeccccchhHH
Confidence 5533322 235688999999999999999999999999998654332 22222111100
Q ss_pred -CCceEEEEcCCCCEEEEE-----eeceEEE-------EeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcE
Q 001163 978 -LADTRVQFHLDQTHLLAV-----HETQIAI-------YEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSV 1044 (1134)
Q Consensus 978 -~~v~~l~fs~dg~~l~~~-----~d~~i~i-------wd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i 1044 (1134)
..+..=.+.+-|.+-++- .++.|-+ +|+.+.+ + ...=.|.++.|||.|+-+|.++..| +
T Consensus 632 ~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr----~---rpeIrv~sv~fsPtgraFAaatTEG-l 703 (893)
T KOG0291|consen 632 LEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRR----F---RPEIRVTSVQFSPTGRAFAAATTEG-L 703 (893)
T ss_pred HHHhccccccccCCccccccccccccccccccCCccccCCccccc----c---CceEEEEEEEECCCcCeeeeecccc-e
Confidence 111222233333332221 0111111 0111110 0 0133688999999999999999988 8
Q ss_pred EEeecCCCccee
Q 001163 1045 GVLTASTLRLRC 1056 (1134)
Q Consensus 1045 ~vwd~~~~~~~~ 1056 (1134)
.||.+++.-+.-
T Consensus 704 ~IYsld~~~~FD 715 (893)
T KOG0291|consen 704 LIYSLDTTILFD 715 (893)
T ss_pred EEEecCCceEEc
Confidence 899988765543
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.5e-49 Score=420.67 Aligned_cols=573 Identities=16% Similarity=0.226 Sum_probs=441.0
Q ss_pred CCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEE
Q 001163 366 PVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLY 445 (1134)
Q Consensus 366 p~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iw 445 (1134)
..|+++.+ +..-.|.+||+.+|+..... +...-...|+|++-+||.-+||+|..||.|+||
T Consensus 32 ~~Gr~va~--~a~E~vn~WdlRtge~~~~l-----------------~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif 92 (888)
T KOG0306|consen 32 GKGRAVAV--SALEQVNIWDLRTGEIEKKL-----------------ILLKKKAEVTCLRSSDDILLLAVGYADGSVQIF 92 (888)
T ss_pred CCCcEEEE--eccccEeEEeeecchhhhhh-----------------hhhcccceEEEeeccCCcceEEEEecCceEEee
Confidence 34775543 33446999999999544310 012344699999999999999999999999999
Q ss_pred EccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEE
Q 001163 446 TYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIF 525 (1134)
Q Consensus 446 d~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 525 (1134)
+..++..+. ++.||...|+++.|...|. .|+|||.|+.|.+||+-...-+..++||...|+..-|.. +..+++
T Consensus 93 ~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~--~~~~lv 165 (888)
T KOG0306|consen 93 SLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN--GDSFLV 165 (888)
T ss_pred ccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccC--CCeEEE
Confidence 999875444 7999999999999999999 799999999999999999999999999999999887754 337999
Q ss_pred EecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC------------eeEEEe
Q 001163 526 STATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG------------AVKRTY 593 (1134)
Q Consensus 526 s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~------------~~~~~~ 593 (1134)
+.+.|+.|++||+++..+......|.+.+..+++.+ +.+++++.+. .+.+|++... +...++
T Consensus 166 S~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~ds----e~~v~~L~~~~D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 166 SVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDS----ELKVWELAFEDDEKETNRYISTKLRGTF 239 (888)
T ss_pred EeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCC----ceEEEEeecccccccccccceeecccee
Confidence 999999999999999999999999999999999988 6777776544 3899988211 111122
Q ss_pred cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEe--------cC------------------------CC
Q 001163 594 HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID--------AD------------------------GG 641 (1134)
Q Consensus 594 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~------------------------~~ 641 (1134)
.....+....+...+++.++++-+.|..+.++.+.+.+.+.... .+ ..
T Consensus 240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~ 319 (888)
T KOG0306|consen 240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT 319 (888)
T ss_pred eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence 22222234456677788899999999999999986643221100 00 00
Q ss_pred CCCcceEEEcCCCc---EEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCC
Q 001163 642 LQASPCIRFNKEGI---LLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGE 718 (1134)
Q Consensus 642 ~~~v~~v~~sp~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 718 (1134)
...+.++.|.|.+. .|+. -.++++..|.++....
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~------------------------------------------ 356 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGK------------------------------------------ 356 (888)
T ss_pred hhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCC------------------------------------------
Confidence 12344555555332 2222 3344444444332100
Q ss_pred CCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCC
Q 001163 719 RTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNA 798 (1134)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg 798 (1134)
..+...+.-.+...+|...|.++++|.+...+++++ ++
T Consensus 357 -----------------------------------------~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~ 394 (888)
T KOG0306|consen 357 -----------------------------------------TSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GE 394 (888)
T ss_pred -----------------------------------------CCccccccceeeeccchhheeEEEeecCceeeeecC-CC
Confidence 000111111122245999999999999988666555 45
Q ss_pred eEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEE
Q 001163 799 VHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM 877 (1134)
Q Consensus 799 ~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~ 877 (1134)
.+++|+.. +.+++.. + ..+.+.+..|-|.++++++|. .|.+.+||+.+...+
T Consensus 395 SikiWn~~----------------------t~kciRT-i----~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~ 447 (888)
T KOG0306|consen 395 SIKIWNRD----------------------TLKCIRT-I----TCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLV 447 (888)
T ss_pred cEEEEEcc----------------------CcceeEE-e----ccccEEEEEecCCCceEEEeccCCceEEEEeehhhhh
Confidence 78888544 4444432 2 234788999999999999999 799999999999999
Q ss_pred EEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc-----ceEEEecc-------CccCceEEEEEeeCCCEEEEE
Q 001163 878 TTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-----DEVKTKLK-------GHQKRITGLAFSNTLNVLVSS 945 (1134)
Q Consensus 878 ~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~-----~~~~~~l~-------~h~~~V~~l~~s~d~~~l~s~ 945 (1134)
.+.++|.+.|..++.+| |++.+++|+.|.+|++||..- |...+.+. .-.+.|.|+.+||||++||.+
T Consensus 448 Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVs 526 (888)
T KOG0306|consen 448 ETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVS 526 (888)
T ss_pred hhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEE
Confidence 99999999999999999 899999999999999999752 11111111 134679999999999999999
Q ss_pred eCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcccceeeccCCCccCEE
Q 001163 946 GADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPIT 1024 (1134)
Q Consensus 946 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~ 1024 (1134)
=-|.+|+||-+++-+ +.-...||. -+|.|+..|||++++++ +.|.+|+||-++-|.|-+.+. +|.+.|.
T Consensus 527 LLdnTVkVyflDtlK-----FflsLYGHk---LPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f--AHdDSvm 596 (888)
T KOG0306|consen 527 LLDNTVKVYFLDTLK-----FFLSLYGHK---LPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF--AHDDSVM 596 (888)
T ss_pred eccCeEEEEEeccee-----eeeeecccc---cceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh--cccCcee
Confidence 999999999999833 555666777 48999999999999999 589999999999999999998 8999999
Q ss_pred EEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163 1025 HATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus 1025 ~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
++.|-|+...+++++.|+.|+-||.+.-+.+..+. +|...|+.++++ | +|.+++++|.|.+|++|+-..
T Consensus 597 ~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-------~H~~ev~cLav~--~-~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 597 SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-------GHHSEVWCLAVS--P-NGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EEEEcccceeEEEecCcceEEeechhhhhhheeec-------cchheeeeeEEc--C-CCCeEEeccCCceeEeeeccC
Confidence 99999999999999999999999999888877666 788999999554 7 789999999999999999865
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.3e-48 Score=415.62 Aligned_cols=534 Identities=14% Similarity=0.207 Sum_probs=422.9
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
....|+|+.-+|+.- ++|+|-.||.|+||+..++..+.+ +.||...|+++.|...|.+||
T Consensus 64 ~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rla 123 (888)
T KOG0306|consen 64 KKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRLA 123 (888)
T ss_pred ccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceEe
Confidence 445899999888886 789999999999999998865543 789999999999999999999
Q ss_pred EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEe
Q 001163 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC 514 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 514 (1134)
+||.|+.|.+||+-...-+. .+.||...|+.+-|..+.+ ++++.|.|+.|++||+.+..|..+.-.|.+.|++++
T Consensus 124 SGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~ 198 (888)
T KOG0306|consen 124 SGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALV 198 (888)
T ss_pred ecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEE
Confidence 99999999999997655333 6999999999999998667 899999999999999999999999999999999999
Q ss_pred ccccCCccEEEEecCCCcEEEEecCCCCce------e------e-ecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEE
Q 001163 515 PHHKENIQFIFSTATDGKIKAWLYDNLGSR------V------D-YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581 (1134)
Q Consensus 515 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~------~------~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 581 (1134)
+.. +.+++++.|+.+++|++....-. . . .....+....++..++++++++-+.|+ .+.+
T Consensus 199 ~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~----~~e~ 270 (888)
T KOG0306|consen 199 LDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADK----VIEL 270 (888)
T ss_pred Eec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchh----hhhh
Confidence 854 57999999999999998321110 0 0 111122344566777888888776543 3666
Q ss_pred EeCCCCeeEE------------Eec--------------------C-CCCCceEEEEEcCCCC---EEEEEeCCCeEEEE
Q 001163 582 WNESEGAVKR------------TYH--------------------G-LGKRSVGVVQFDTTKN---RFLAAGDEFMIKFW 625 (1134)
Q Consensus 582 wd~~~~~~~~------------~~~--------------------~-~~~~~v~~~~~~~~~~---~l~~~~~dg~i~iw 625 (1134)
+.+.+.+.+. ... . .....+.++.+-|.++ .++. -.++++..|
T Consensus 271 frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~y 349 (888)
T KOG0306|consen 271 FRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWY 349 (888)
T ss_pred eeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEE
Confidence 6655321100 000 0 0011455666666553 3333 467788888
Q ss_pred EcCC-Cc------eeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhc
Q 001163 626 DMDN-VN------LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVK 698 (1134)
Q Consensus 626 d~~~-~~------~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1134)
.+.. +. .+..+...+|...|.+++++.+...+++|+ .+.+.+|+..+. ++++++.
T Consensus 350 sl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~-kciRTi~---------------- 411 (888)
T KOG0306|consen 350 SLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTL-KCIRTIT---------------- 411 (888)
T ss_pred EeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCc-ceeEEec----------------
Confidence 7765 22 233455557788999999999887777665 569999999877 5555542
Q ss_pred ccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCcccccc
Q 001163 699 APAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMR 778 (1134)
Q Consensus 699 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1134)
.+.
T Consensus 412 -----------------------------------------------------------------------------~~y 414 (888)
T KOG0306|consen 412 -----------------------------------------------------------------------------CGY 414 (888)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 235
Q ss_pred EEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeE
Q 001163 779 VSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYV 858 (1134)
Q Consensus 779 i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l 858 (1134)
+.+..|-|.+++++.|..+|.+.+|++. +..++.. ++ +|.+.|+.++.+||++.+
T Consensus 415 ~l~~~Fvpgd~~Iv~G~k~Gel~vfdla----------------------S~~l~Et-i~--AHdgaIWsi~~~pD~~g~ 469 (888)
T KOG0306|consen 415 ILASKFVPGDRYIVLGTKNGELQVFDLA----------------------SASLVET-IR--AHDGAIWSISLSPDNKGF 469 (888)
T ss_pred EEEEEecCCCceEEEeccCCceEEEEee----------------------hhhhhhh-hh--ccccceeeeeecCCCCce
Confidence 6788899999999999999999998765 2222221 22 399999999999999999
Q ss_pred EEee-CCeEEEEEccC-----CeEE--------EEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEecc
Q 001163 859 MSAS-GGKISLFNMMT-----FKTM--------TTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK 924 (1134)
Q Consensus 859 a~~s-dg~i~lwd~~~-----~~~~--------~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~ 924 (1134)
++++ |.+|++||..- +... ++++ -...|.|+.+|| |+++||++--|.+++||-+++-+..-.+-
T Consensus 470 vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLY 547 (888)
T KOG0306|consen 470 VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLY 547 (888)
T ss_pred EEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeec
Confidence 9999 99999999732 1111 1222 456799999999 99999999999999999999999999999
Q ss_pred CccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEE
Q 001163 925 GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIY 1003 (1134)
Q Consensus 925 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iw 1003 (1134)
||.-+|.|+.+|||+++++|||.|.+|++|-++-|.+ .+..-+|. +.|.++.|-|+..++.+ |.|+.|+-|
T Consensus 548 GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC-----HKS~fAHd---DSvm~V~F~P~~~~FFt~gKD~kvKqW 619 (888)
T KOG0306|consen 548 GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC-----HKSFFAHD---DSVMSVQFLPKTHLFFTCGKDGKVKQW 619 (888)
T ss_pred ccccceeEEeccCCcCeEEeccCCCceEEeccccchh-----hhhhhccc---CceeEEEEcccceeEEEecCcceEEee
Confidence 9999999999999999999999999999999998774 33344444 57999999998888877 799999999
Q ss_pred eCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcc
Q 001163 1004 EAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRL 1054 (1134)
Q Consensus 1004 d~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~ 1054 (1134)
|-...+++..+. +|...|++++.+|+|.+++++|.|.+|++|.......
T Consensus 620 Dg~kFe~iq~L~--~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 620 DGEKFEEIQKLD--GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred chhhhhhheeec--cchheeeeeEEcCCCCeEEeccCCceeEeeeccCcce
Confidence 999999999988 8999999999999999999999999999999766433
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.1e-50 Score=395.75 Aligned_cols=367 Identities=20% Similarity=0.294 Sum_probs=296.3
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 493 (1134)
+.||.++|.|++|+|+|+.||+|+.|.++++||+.+..... +..+|...|.|++|+|||+ .|+||+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 68999999999999999999999999999999999977554 7899999999999999999 799999999999999
Q ss_pred CCCCcee-EEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecC
Q 001163 494 AVTGTKQ-YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572 (1134)
Q Consensus 494 ~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 572 (1134)
.++|+++ ..+.+|...|++++|.|-. ..|.+++|++++.|
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------l~p~~r~las~skD 226 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------LVPPCRRLASSSKD 226 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccc---------------------------------------cCCCccceecccCC
Confidence 9999876 5789999999999986532 12344455555443
Q ss_pred CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC
Q 001163 573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (1134)
Q Consensus 573 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 652 (1134)
+ .++|||+..++++..+.+|.. .|+++.|..+| ++++|+.|++|++|+...|.+...+.+|+| .|+.++.+.
T Consensus 227 g----~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lalsT 298 (480)
T KOG0271|consen 227 G----SVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALST 298 (480)
T ss_pred C----CEEEEEccCceEEEEeccCcc-ceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--heeeeeccc
Confidence 3 266677777777888888887 99999998765 999999999999999999999999997755 899998886
Q ss_pred CCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCC
Q 001163 653 EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND 732 (1134)
Q Consensus 653 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 732 (1134)
+- .|-+|..|.+=+- .+... +........+.
T Consensus 299 dy-~LRtgaf~~t~~~---------~~~~s----e~~~~Al~rY~----------------------------------- 329 (480)
T KOG0271|consen 299 DY-VLRTGAFDHTGRK---------PKSFS----EEQKKALERYE----------------------------------- 329 (480)
T ss_pred hh-hhhcccccccccc---------CCChH----HHHHHHHHHHH-----------------------------------
Confidence 52 2333333321111 01010 00111111110
Q ss_pred CccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCc
Q 001163 733 SRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNS 812 (1134)
Q Consensus 733 ~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~ 812 (1134)
. ..-..+..+++++.|.++.+|+-.
T Consensus 330 ---------------------------------------------~----~~~~~~erlVSgsDd~tlflW~p~------ 354 (480)
T KOG0271|consen 330 ---------------------------------------------A----VLKDSGERLVSGSDDFTLFLWNPF------ 354 (480)
T ss_pred ---------------------------------------------H----hhccCcceeEEecCCceEEEeccc------
Confidence 0 001124668999999999988522
Q ss_pred ccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEE
Q 001163 813 TGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLA 891 (1134)
Q Consensus 813 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~ 891 (1134)
++.+++.. +. +|..-|..+.||||++++|+++ |.+|++||..+|+.+.+|++|-+.|..++
T Consensus 355 ---------------~~kkpi~r-mt--gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva 416 (480)
T KOG0271|consen 355 ---------------KSKKPITR-MT--GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA 416 (480)
T ss_pred ---------------ccccchhh-hh--chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE
Confidence 22223332 33 3999999999999999999999 99999999999999999999999999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001163 892 FHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955 (1134)
Q Consensus 892 ~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd 955 (1134)
|+. |.++|++|+.|.++++|++.+.++...+.||.++|.++.|+|||..+++|+.|..+++|.
T Consensus 417 wsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 417 WSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999 999999999999999999999999999999999999999999999999999999999995
No 12
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-49 Score=394.89 Aligned_cols=325 Identities=22% Similarity=0.348 Sum_probs=289.4
Q ss_pred ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001163 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (1134)
Q Consensus 354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 433 (1134)
+|.+.|.|++|||+|++ ||+|+.|.++++||+.+...+.+ .++|...|.|++|||||+.|
T Consensus 113 GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcvawsPDgk~i 172 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVAWSPDGKKI 172 (480)
T ss_pred CCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEEECCCcchh
Confidence 49999999999999996 58999999999999999876654 78999999999999999999
Q ss_pred EEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEec-----CCCceEEEEEeCCCeEEEEECCCCceeEEecCCCc
Q 001163 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY-----PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES 508 (1134)
Q Consensus 434 as~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-----~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 508 (1134)
|+|+.||+|++||.++|+++.. .|.+|...|++++|.| ..+ +|++++.||+|+|||+..+.++..+.+|+.
T Consensus 173 ASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~~~lsgHT~ 248 (480)
T KOG0271|consen 173 ASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCVRTLSGHTA 248 (480)
T ss_pred hccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEEEEeccCcc
Confidence 9999999999999999987654 6899999999999976 445 799999999999999999999999999999
Q ss_pred CEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEEC-----------cCCC-------------
Q 001163 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYS-----------ADGA------------- 564 (1134)
Q Consensus 509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s-----------~~~~------------- 564 (1134)
+|+|++|- ++ .+|++|+.|++|++|+...+.....+.+|.+.|+.++.+ |.++
T Consensus 249 ~VTCvrwG--G~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al 325 (480)
T KOG0271|consen 249 SVTCVRWG--GE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKAL 325 (480)
T ss_pred ceEEEEEc--CC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHH
Confidence 99999983 23 699999999999999999888888999999999988876 2233
Q ss_pred ------------EEEEEecCCCCCeEEEEEeCCCC-eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc
Q 001163 565 ------------RLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN 631 (1134)
Q Consensus 565 ------------~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 631 (1134)
+|++++.| ..+.+|+.... +++..+.+|.. .|+.+.|+||+.++++++.|..|++||.++|+
T Consensus 326 ~rY~~~~~~~~erlVSgsDd----~tlflW~p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk 400 (480)
T KOG0271|consen 326 ERYEAVLKDSGERLVSGSDD----FTLFLWNPFKSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVKLWDGRTGK 400 (480)
T ss_pred HHHHHhhccCcceeEEecCC----ceEEEecccccccchhhhhchhh-heeeEEECCCccEEEEeecccceeeeeCCCcc
Confidence 48888754 45999997654 58889999988 89999999999999999999999999999999
Q ss_pred eeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccc
Q 001163 632 LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANAN 711 (1134)
Q Consensus 632 ~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1134)
.+.++.+| ...|+.++|+.|.++|++|+.|.++++|++.+. .+...+
T Consensus 401 ~lasfRGH--v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~DL------------------------------ 447 (480)
T KOG0271|consen 401 FLASFRGH--VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK-KLKQDL------------------------------ 447 (480)
T ss_pred hhhhhhhc--cceeEEEEeccCccEEEEcCCCceEEEEEeeee-eecccC------------------------------
Confidence 99999865 779999999999999999999999999998765 222211
Q ss_pred cccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCcee
Q 001163 712 VGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAI 791 (1134)
Q Consensus 712 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l 791 (1134)
.+|...|.++.|+|||..+
T Consensus 448 -------------------------------------------------------------pGh~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 448 -------------------------------------------------------------PGHADEVFAVDWSPDGQRV 466 (480)
T ss_pred -------------------------------------------------------------CCCCceEEEEEecCCCcee
Confidence 1388899999999999999
Q ss_pred eeeccCCeEEeee
Q 001163 792 LALASNAVHKLWK 804 (1134)
Q Consensus 792 ~~~~~dg~i~vw~ 804 (1134)
++++.|..+++|.
T Consensus 467 ~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 467 ASGGKDKVLRLWR 479 (480)
T ss_pred ecCCCceEEEeec
Confidence 9999999999994
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3.8e-43 Score=373.83 Aligned_cols=621 Identities=14% Similarity=0.153 Sum_probs=405.0
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEe--C
Q 001163 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY--S 438 (1134)
Q Consensus 361 ~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s--~ 438 (1134)
.++.+|... ++|. -....|.+||++...+- +++..|..+++|++||++|+|+|+|- .
T Consensus 42 gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~-------------------hlvnssRk~~t~vAfS~~GryvatGEcG~ 100 (1080)
T KOG1408|consen 42 GLASVPCSG-LCAY-PAGCVVVLFNVDSCTQS-------------------HLVNSSRKPLTCVAFSQNGRYVATGECGR 100 (1080)
T ss_pred ccccccccc-ceee-ccCcEEEEEcccccchh-------------------heecccCcceeEEEEcCCCcEEEecccCC
Confidence 455566554 2221 12346889998765433 34677889999999999999999984 6
Q ss_pred CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC--CCeEEEEECCCCceeEEecCCCcCEEEEecc
Q 001163 439 KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE--DRVIKVWDAVTGTKQYIFEGHESPVYSICPH 516 (1134)
Q Consensus 439 dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 516 (1134)
...++||++.....+. .+..|+..|+|++|+|.++ ++++.+. |-.|.+||++..-....- .-...|..++|
T Consensus 101 ~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav~f- 173 (1080)
T KOG1408|consen 101 TPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAVAF- 173 (1080)
T ss_pred Cccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhccccccc-ccceeEEEEEE-
Confidence 6789999999877555 6888999999999999999 7887665 557788987655433222 24566788887
Q ss_pred ccCCccEEEEecCCCcEEEEecCCCCceee---ecCCCCCeeEEEE------------CcCCCEEEEEecCCCCCeEEEE
Q 001163 517 HKENIQFIFSTATDGKIKAWLYDNLGSRVD---YDAPGHSSTMMAY------------SADGARLFSCGTNKEGESYLVE 581 (1134)
Q Consensus 517 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~~~~~v~~~~~------------s~~~~~l~~~~~~~~~~~~i~~ 581 (1134)
+.+|.++++.+ +..|++|.++....... +.+...-.-.+.+ ..+..+.++. .+.+.-
T Consensus 174 -sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhLvE 245 (1080)
T KOG1408|consen 174 -SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHLVE 245 (1080)
T ss_pred -ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccceee
Confidence 56668888877 48999999886552111 1111100001110 0011111111 111211
Q ss_pred EeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC----------------------
Q 001163 582 WNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD---------------------- 639 (1134)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------- 639 (1134)
| .+.+++.++.........+++.+ .+++++|+.+|.|++|+..+-..+.++...
T Consensus 246 F--SsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~ 321 (1080)
T KOG1408|consen 246 F--SSRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSP 321 (1080)
T ss_pred e--chhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCc
Confidence 1 22233333322222244566665 579999999999999998765544333210
Q ss_pred CCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeE--EEeccCcccccccchhhhhcccccccccccccccccCcC
Q 001163 640 GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLL--RTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLG 717 (1134)
Q Consensus 640 ~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 717 (1134)
.......++.|++....|.+...|..++|||+.+-.+.- ..+..|...++.+..
T Consensus 322 a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~------------------------ 377 (1080)
T KOG1408|consen 322 AIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVEN------------------------ 377 (1080)
T ss_pred ccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeecc------------------------
Confidence 011123477899999999999999999999997652221 112222222111100
Q ss_pred CCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccC
Q 001163 718 ERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN 797 (1134)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d 797 (1134)
.+.-.-.+... .....-++++++|++|++|++.........+.-. ++.+-..++. .|
T Consensus 378 ------~p~nv~~~~~a-clp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNi--------------ls~~l~ki~y--~d 434 (1080)
T KOG1408|consen 378 ------LPCNVHSPTAA-CLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNI--------------LSANLSKIPY--ED 434 (1080)
T ss_pred ------ccccccCcccc-cCCccceeEecCCCcEEEeecccccccceeeccc--------------chhhhhcCcc--cc
Confidence 00000000000 1111224555555666666554321111111000 0000000000 00
Q ss_pred CeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeE
Q 001163 798 AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT 876 (1134)
Q Consensus 798 g~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~ 876 (1134)
+...+ +.....-++|-...... .....++++++||+|++||+|. .|.++||++...+.
T Consensus 435 ~~~q~--------------~~d~~~~~fdka~~s~~-------d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~ 493 (1080)
T KOG1408|consen 435 STQQI--------------MHDASAGIFDKALVSTC-------DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY 493 (1080)
T ss_pred Cchhh--------------hhhccCCcccccchhhc-------CcccceEEEEECCCcceecccCccCceEEEEehhhhh
Confidence 00000 00000111121111111 1466799999999999999999 79999999999999
Q ss_pred EEEecCCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEEccc-ceEEEeccCccCceEEEEEeeCC--CEEEEEeCCCcE
Q 001163 877 MTTFMPPPPAATFLAFHPQ--DNNIIAIGMEDSSIQIYNVRV-DEVKTKLKGHQKRITGLAFSNTL--NVLVSSGADSQL 951 (1134)
Q Consensus 877 ~~~~~~~~~~v~~l~~sp~--~~~~la~g~~dg~i~iwd~~~-~~~~~~l~~h~~~V~~l~~s~d~--~~l~s~s~Dg~i 951 (1134)
...+..|..+|.|+.|+-. ..++||+++.|+.|+|||+.. ..+++++.+|+..|+++.|.-.| ..++++|.|+.|
T Consensus 494 ~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksi 573 (1080)
T KOG1408|consen 494 TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSI 573 (1080)
T ss_pred hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhh
Confidence 9999999999999999852 357999999999999999864 36678999999999999999887 789999999977
Q ss_pred EEEECCCCccccceeeeecCCC-CCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcccceeecc-CCCccCEEEEEE
Q 001163 952 CVWSTDGWEKQASKFLTIPNGR-TASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVP-REASGPITHATY 1028 (1134)
Q Consensus 952 ~iwd~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~ 1028 (1134)
.+-...... . ......++ ......+..++..|..+++++ +.|+.|+||++.+++..+.|.. ++|.+....+..
T Consensus 574 mFr~~qk~~--~--g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~l 649 (1080)
T KOG1408|consen 574 MFRVNQKAS--S--GRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVIL 649 (1080)
T ss_pred heehhcccc--C--ceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEE
Confidence 654332110 0 11111111 112246889999999999999 6999999999999999999984 356788889999
Q ss_pred ccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163 1029 SCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus 1029 s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
.|.|-||++.+.|+++.++|..+|+...+.. ||+..|+.+ .|.+ |.+.|++.+.||.|.||.++.
T Consensus 650 DPSgiY~atScsdktl~~~Df~sgEcvA~m~-------GHsE~VTG~--kF~n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 650 DPSGIYLATSCSDKTLCFVDFVSGECVAQMT-------GHSEAVTGV--KFLN-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred CCCccEEEEeecCCceEEEEeccchhhhhhc-------Ccchheeee--eecc-cchhheeecCCceEEEEECch
Confidence 9999999999999999999999999988776 899999999 7878 799999999999999999974
No 14
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=9.8e-38 Score=340.55 Aligned_cols=584 Identities=16% Similarity=0.175 Sum_probs=436.5
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCE
Q 001163 362 MDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHI 441 (1134)
Q Consensus 362 v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~ 441 (1134)
..|..-|..+.++.+.+.+..+||.+.-..+.. -..+...|+|++=..+ ++.+++.. .
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~--~vy~A~g~-~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKD--YVYVASGN-K 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCc--eEEEecCc-E
Confidence 566667777888999999999999987665542 2457889999987555 44444333 3
Q ss_pred EEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC-ceeE---Ee-cCCCcCEEEEecc
Q 001163 442 VHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQY---IF-EGHESPVYSICPH 516 (1134)
Q Consensus 442 v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~---~~-~~h~~~v~~~~~~ 516 (1134)
|.+|- .|+.++. .+.+|.+.|.-+.- =|. .++++..++.+.||+...+ +.++ ++ +.....|+++. +
T Consensus 97 i~~~~--rgk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYA--RGKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEE--ccceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 55554 4444443 46678878877654 367 6899999999999998874 2211 22 22223388775 5
Q ss_pred ccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCC
Q 001163 517 HKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 596 (1134)
Q Consensus 517 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 596 (1134)
|+.--+.++.|+.+|.+.+|++++++....+......|+++.-+|-=..++.|..+| .|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G----~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENG----TVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCc----eEEEEEcccCcEEEEEEcc
Confidence 555456789999999999999999999999999889999999999988999987644 6999999999999999987
Q ss_pred CCCceEEEEEcCCCCEEEE-EeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCc
Q 001163 597 GKRSVGVVQFDTTKNRFLA-AGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGI 675 (1134)
Q Consensus 597 ~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 675 (1134)
.. .|+.++|..||+.+++ ++..|.+.+||++..+.+..+.. .|.+.+....|-|....+++++.|+.+++|-..++.
T Consensus 244 ~g-~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n-ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~d 321 (910)
T KOG1539|consen 244 WG-RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN-AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGD 321 (910)
T ss_pred cc-ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec-cccCCcccceecCCCceEeeccCCCceeEEEeeCCC
Confidence 44 8999999999976555 55779999999999888877763 235678999999999999999999999999766442
Q ss_pred eeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceee
Q 001163 676 RLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWK 755 (1134)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~ 755 (1134)
-..+.++
T Consensus 322 g~pR~LR------------------------------------------------------------------------- 328 (910)
T KOG1539|consen 322 GVPRLLR------------------------------------------------------------------------- 328 (910)
T ss_pred Ccchhee-------------------------------------------------------------------------
Confidence 1111110
Q ss_pred ecccCCccceeccccCCccccccEEEEEEe-cCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccc
Q 001163 756 LTEITEPSQCRSLRLPDNLTAMRVSRLIYT-NSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMT 834 (1134)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-pdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 834 (1134)
...||..+..++.|. .+|..+.+++.|++.+.+.+....++..-.. .......+...
T Consensus 329 ---------------~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~~~~kk~~ 386 (910)
T KOG1539|consen 329 ---------------SRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNKKRAKKVN 386 (910)
T ss_pred ---------------eccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------ccccccccccc
Confidence 012588888888887 6889999999999998887654432211100 01111111111
Q ss_pred cCCCCCCCCCCeeEEEEcCC-----CCeEEEee-CCeEEEEEccCCeE-EEEec-----CCCCCeEEEEEcCCCCcEEEE
Q 001163 835 NDISDTNPEDAVPCFALSKN-----DSYVMSAS-GGKISLFNMMTFKT-MTTFM-----PPPPAATFLAFHPQDNNIIAI 902 (1134)
Q Consensus 835 ~~~~~~~h~~~v~~v~~s~d-----g~~la~~s-dg~i~lwd~~~~~~-~~~~~-----~~~~~v~~l~~sp~~~~~la~ 902 (1134)
..-.....-.+|..+++... .+.+++.- +..++.|+...... ...+. .....+++++.++ .|++.+.
T Consensus 387 ~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~I 465 (910)
T KOG1539|consen 387 VFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFI 465 (910)
T ss_pred ccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEE
Confidence 00000002345666665532 22333333 56799999976543 22232 2346799999999 9999999
Q ss_pred EeCCCcEEEEEcccceEEEec---cCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCC
Q 001163 903 GMEDSSIQIYNVRVDEVKTKL---KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALA 979 (1134)
Q Consensus 903 g~~dg~i~iwd~~~~~~~~~l---~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 979 (1134)
|...|.|-+|++.+|-....+ ..|.++|++++...-++.++|++.+|-+++||+...... -.+.-+ ..
T Consensus 466 G~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~----~~l~l~-----~~ 536 (910)
T KOG1539|consen 466 GYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK----KSLRLG-----SS 536 (910)
T ss_pred eccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee----eeeccC-----CC
Confidence 999999999999999888888 589999999999888899999999999999999884411 111122 35
Q ss_pred ceEEEEcCCCCEEEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeec
Q 001163 980 DTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRI 1058 (1134)
Q Consensus 980 v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~ 1058 (1134)
+.++..+.....+++ ..|-.|+++|+.+.+.++.+. +|...|++++|||||++|++++.|++|++||+.++.++-.+
T Consensus 537 ~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~--gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 537 ITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW--GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred cceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh--ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence 788888888888888 478899999999999999998 99999999999999999999999999999999999998665
Q ss_pred CCCcccCCCCCCCceeEEEEecCCCCCEEEEEecC-CcEEEEe
Q 001163 1059 NPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTD-GGVYIIE 1100 (1134)
Q Consensus 1059 ~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~D-g~v~vW~ 1100 (1134)
.... -+..++|+| ++++||++..| .-|++|.
T Consensus 615 ~vd~----------~~~sls~SP-ngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 615 LVDS----------PCTSLSFSP-NGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred ecCC----------cceeeEECC-CCCEEEEEEecCceEEEEE
Confidence 5221 244569999 79999999999 5799995
No 15
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4.8e-39 Score=342.68 Aligned_cols=556 Identities=14% Similarity=0.151 Sum_probs=365.3
Q ss_pred cCCCeeEEEEcCCCCeEEEEEe--CCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGT--NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 432 (1134)
+...++|++||++|+| +|+|- ....++||++.....+.. +..|...|+|++|+|.++|
T Consensus 77 sRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFsp~~ky 136 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFSPGNKY 136 (1080)
T ss_pred cCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeecCCCcE
Confidence 6779999999999995 57875 456799999987765553 6789999999999999999
Q ss_pred EEEEeC--CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE---------
Q 001163 433 FGVAYS--KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY--------- 501 (1134)
Q Consensus 433 las~s~--dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~--------- 501 (1134)
+++.+. |-.|.+||.+.+.... -+.-...|..++|+.||. +++|.+. ..|++|.++.++...
T Consensus 137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs 209 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRS 209 (1080)
T ss_pred EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeeee-eeEEEEEeeccccccCCccccchh
Confidence 998765 5578899887543322 223456799999999999 7888774 689999987665211
Q ss_pred ----Ee------------------------cCC-----------------CcCEEEEeccccCCccEEEEecCCCcEEEE
Q 001163 502 ----IF------------------------EGH-----------------ESPVYSICPHHKENIQFIFSTATDGKIKAW 536 (1134)
Q Consensus 502 ----~~------------------------~~h-----------------~~~v~~~~~~~~~~~~~l~s~s~dg~i~vw 536 (1134)
.+ .|| +..-+||+++ .++|++|+.+|.|++|
T Consensus 210 ~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs----~r~I~cgCa~g~vrlF 285 (1080)
T KOG1408|consen 210 YFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS----SRLIACGCAKGMVRLF 285 (1080)
T ss_pred hhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee----cceEEEeeccceeeec
Confidence 00 011 1112334432 2789999999999999
Q ss_pred ecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEE
Q 001163 537 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAA 616 (1134)
Q Consensus 537 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 616 (1134)
+..+......+.....--..++--..-..+.++ .....| .....+.|++....|.+.
T Consensus 286 np~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~------------------~~~a~f-----PD~IA~~Fdet~~klscV 342 (1080)
T KOG1408|consen 286 NPETLDYAGTLPRSHALGSDTANLSQPEPKNSE------------------SSPAIF-----PDAIACQFDETTDKLSCV 342 (1080)
T ss_pred Ccchhhhccccccccccccchhhcccccccccc------------------cCcccC-----CceeEEEecCCCceEEEE
Confidence 877654433332211100000000000000000 000001 123456677777788888
Q ss_pred eCCCeEEEEEcCCCceeEEEe-cCCCCCCcceEEEcC-----------CCcEEEEEECCCcEEEEEccCCceeEEEeccC
Q 001163 617 GDEFMIKFWDMDNVNLLASID-ADGGLQASPCIRFNK-----------EGILLAVSTNDNGIKILANADGIRLLRTVESR 684 (1134)
Q Consensus 617 ~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~sp-----------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 684 (1134)
-.|..++|||++.-+.+.... .--|...|+.+.--| -...+++++.|++||+|++..+. --..+...
T Consensus 343 YndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ct-nn~vyrRN 421 (1080)
T KOG1408|consen 343 YNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCT-NNQVYRRN 421 (1080)
T ss_pred EcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccc-ccceeecc
Confidence 888888888887644332211 001122333332222 01358899999999999987641 11111110
Q ss_pred cccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccc
Q 001163 685 TFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQ 764 (1134)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~ 764 (1134)
... .+.. .+..-.+....+. |...-++|-..
T Consensus 422 ils--------------------------~~l~-------ki~y~d~~~q~~~----------d~~~~~fdka~------ 452 (1080)
T KOG1408|consen 422 ILS--------------------------ANLS-------KIPYEDSTQQIMH----------DASAGIFDKAL------ 452 (1080)
T ss_pred cch--------------------------hhhh-------cCccccCchhhhh----------hccCCcccccc------
Confidence 000 0000 0000000000000 00011111110
Q ss_pred eeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCC
Q 001163 765 CRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPED 844 (1134)
Q Consensus 765 ~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~ 844 (1134)
.........+.+++++|+|+.|++|..-|.++||++..-.. ... +. +|+.
T Consensus 453 -----~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~---------------------~~~--~e--AHes 502 (1080)
T KOG1408|consen 453 -----VSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY---------------------TCF--ME--AHES 502 (1080)
T ss_pred -----hhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh---------------------hhh--ee--cccc
Confidence 00012456799999999999999999999999998763110 111 22 3999
Q ss_pred CeeEEEEcC---CCCeEEEee-CCeEEEEEcc-CCeEEEEecCCCCCeEEEEEcCCCC--cEEEEEeCCCcEEEEEcccc
Q 001163 845 AVPCFALSK---NDSYVMSAS-GGKISLFNMM-TFKTMTTFMPPPPAATFLAFHPQDN--NIIAIGMEDSSIQIYNVRVD 917 (1134)
Q Consensus 845 ~v~~v~~s~---dg~~la~~s-dg~i~lwd~~-~~~~~~~~~~~~~~v~~l~~sp~~~--~~la~g~~dg~i~iwd~~~~ 917 (1134)
.|.|+.||. ..++||+++ |.-|.|||.. ...++.++.+|...|+++.|.- .| ..+++++.|+.|..--....
T Consensus 503 EilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~ 581 (1080)
T KOG1408|consen 503 EILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKA 581 (1080)
T ss_pred eeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee-cCCceEEEeccCchhhheehhccc
Confidence 999999994 357899999 7889999985 4567888999999999999987 44 56778888887654332211
Q ss_pred eEEEeccCc-----cCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEE
Q 001163 918 EVKTKLKGH-----QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHL 992 (1134)
Q Consensus 918 ~~~~~l~~h-----~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l 992 (1134)
.....+..| ...+..++..|..+++++++.|..|+||++++++.. +.+.+.....+..-.+...|.|.||
T Consensus 582 ~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~-----k~FKgs~~~eG~lIKv~lDPSgiY~ 656 (1080)
T KOG1408|consen 582 SSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV-----KSFKGSRDHEGDLIKVILDPSGIYL 656 (1080)
T ss_pred cCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee-----eeecccccCCCceEEEEECCCccEE
Confidence 111122222 356889999999999999999999999999998733 3333333333567789999999999
Q ss_pred EEE-eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCC
Q 001163 993 LAV-HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTL 1052 (1134)
Q Consensus 993 ~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~ 1052 (1134)
+++ +|.++.+||.-+|++++++. +|+..|+.+.|++|.+.|++.+.||.|.||.+..-
T Consensus 657 atScsdktl~~~Df~sgEcvA~m~--GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 657 ATSCSDKTLCFVDFVSGECVAQMT--GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred EEeecCCceEEEEeccchhhhhhc--CcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 994 99999999999999999999 99999999999999999999999999999998764
No 16
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.7e-41 Score=339.17 Aligned_cols=284 Identities=18% Similarity=0.244 Sum_probs=264.7
Q ss_pred eecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC--C
Q 001163 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD--G 430 (1134)
Q Consensus 353 ~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--~ 430 (1134)
++.+.+|..+.||+|++ ++||||-+|.++||+..+...+.+ +.||...|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCc
Confidence 45678999999999999 679999999999999999876654 7999999999999995 6
Q ss_pred CEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCE
Q 001163 431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV 510 (1134)
Q Consensus 431 ~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v 510 (1134)
..||+|+.||+|++|++.+...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||+.++..+....||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999876555 7899999999999999999 89999999999999999999999999999999
Q ss_pred EEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeE
Q 001163 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590 (1134)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 590 (1134)
.+++|++ ||.++++|+.|..-+|||++++.++..+.+|..+|.+++|+|+|..|++|+.| ++++|||++..+.+
T Consensus 307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~D----nt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSD----NTCKVWDLRMRSEL 380 (459)
T ss_pred ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCC----CcEEEeeecccccc
Confidence 9999965 55899999999999999999999999999999999999999999999999764 46999999999999
Q ss_pred EEecCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEE
Q 001163 591 RTYHGLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKIL 669 (1134)
Q Consensus 591 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw 669 (1134)
.++.+|.+ .|..++|+| .|.+|++++.|++++||...+..++..+.+| ...|.++..++++..+++++.|+++++|
T Consensus 381 y~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH--e~kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 381 YTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH--EGKVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred eecccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC--ccceEEEEeccCCceEEEeccCceeeec
Confidence 99999998 899999998 6789999999999999999999999999966 7789999999999999999999999999
Q ss_pred E
Q 001163 670 A 670 (1134)
Q Consensus 670 ~ 670 (1134)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 5
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.9e-39 Score=331.81 Aligned_cols=312 Identities=19% Similarity=0.307 Sum_probs=260.2
Q ss_pred eeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163 348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1134)
Q Consensus 348 ~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (1134)
.....+.|.++|.+++|+|-..-++|+|+.|-+.++|++....-..... .++..|...-. .-...+..|++++|+
T Consensus 170 ~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q---~~lrh~~~~~~--~s~~~nkdVT~L~Wn 244 (524)
T KOG0273|consen 170 SKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ---LVLRHCIREGG--KSVPSNKDVTSLDWN 244 (524)
T ss_pred cceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh---hhhhhhhhhhc--ccCCccCCcceEEec
Confidence 3355666999999999999877688999999999999987411110000 00000000000 011234689999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCC
Q 001163 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 507 (1134)
Q Consensus 428 pd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~ 507 (1134)
.+|.+||+|+.||.++||+...+. +. ++..|.++|.++.|+.+|. +|++++.|+++.+||..+|...+.|.-|.
T Consensus 245 ~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q~f~~~s 318 (524)
T KOG0273|consen 245 NDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQQFEFHS 318 (524)
T ss_pred CCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEEeeeecc
Confidence 999999999999999999987654 33 5888999999999999999 89999999999999999999999999898
Q ss_pred cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC
Q 001163 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (1134)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 587 (1134)
.+-..+.|-. . ..+++++.|+.|+++.+....+...+.+|.++|.++.|.|.|.+|++++.|+ ++++|.+...
T Consensus 319 ~~~lDVdW~~-~--~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~----TlkiWs~~~~ 391 (524)
T KOG0273|consen 319 APALDVDWQS-N--DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDG----TLKIWSMGQS 391 (524)
T ss_pred CCccceEEec-C--ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCC----eeEeeecCCC
Confidence 8866677642 2 5799999999999999999999999999999999999999999999998644 6999999999
Q ss_pred eeEEEecCCCCCceEEEEEcCCC---------CEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEE
Q 001163 588 AVKRTYHGLGKRSVGVVQFDTTK---------NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 658 (1134)
Q Consensus 588 ~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~ 658 (1134)
.....+..|.+ .|..+.|+|.| ..+++++.|++|++||+..+.++..+..| ..+|.+++|+|+|+++|
T Consensus 392 ~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvafS~~g~ylA 468 (524)
T KOG0273|consen 392 NSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAFSPNGRYLA 468 (524)
T ss_pred cchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEecCCCcEEE
Confidence 99999999998 89999999975 47899999999999999999999999855 77999999999999999
Q ss_pred EEECCCcEEEEEccCCceeEEEe
Q 001163 659 VSTNDNGIKILANADGIRLLRTV 681 (1134)
Q Consensus 659 ~~~~dg~i~iw~~~~~~~~~~~~ 681 (1134)
+|+.||.|.+|+..++ .+++.+
T Consensus 469 sGs~dg~V~iws~~~~-~l~~s~ 490 (524)
T KOG0273|consen 469 SGSLDGCVHIWSTKTG-KLVKSY 490 (524)
T ss_pred ecCCCCeeEeccccch-heeEee
Confidence 9999999999999887 455444
No 18
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.1e-37 Score=329.96 Aligned_cols=587 Identities=15% Similarity=0.188 Sum_probs=398.6
Q ss_pred ceeEEEee-cCCCeeEEEEcCCCC--eEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEE
Q 001163 347 KTVVMTLN-QGSAVKSMDFHPVQQ--ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNR 423 (1134)
Q Consensus 347 ~~~~~~~~-h~~~V~~v~fsp~g~--~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 423 (1134)
.....++. |...|+|+.|-|+.+ -.+++|+.||.|.+|.+.......... +.+|.. .+
T Consensus 44 ~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~-----------------~~g~~~--~~ 104 (764)
T KOG1063|consen 44 ILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYT-----------------IQGHCK--EC 104 (764)
T ss_pred ceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEe-----------------ecCcce--eE
Confidence 33444454 999999999999876 135799999999999998444333221 345544 44
Q ss_pred EEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeee--cCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC--ce
Q 001163 424 VMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE--AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG--TK 499 (1134)
Q Consensus 424 l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~--~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~--~~ 499 (1134)
++++.......+...|+.+.+||.+..+ +.....+. .-..--.|+++.++.+..+++.|+.+..|.++.-.++ +.
T Consensus 105 ~cv~a~~~~~~~~~ad~~v~vw~~~~~e-~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~ 183 (764)
T KOG1063|consen 105 VCVVARSSVMTCKAADGTVSVWDKQQDE-VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFAR 183 (764)
T ss_pred EEEEeeeeEEEeeccCceEEEeecCCCc-eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeE
Confidence 5555444444444789999999995544 11111122 1222345677778666557778888888888865433 45
Q ss_pred eEEecCCCcCEEEEeccccCC-ccEEEEecCCCcEEEEecCCCCc---------------------e----------eee
Q 001163 500 QYIFEGHESPVYSICPHHKEN-IQFIFSTATDGKIKAWLYDNLGS---------------------R----------VDY 547 (1134)
Q Consensus 500 ~~~~~~h~~~v~~~~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~---------------------~----------~~~ 547 (1134)
+..+.||...|.+++|..... .-+|+++|.|..||+|.+..... . ..+
T Consensus 184 v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall 263 (764)
T KOG1063|consen 184 VAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALL 263 (764)
T ss_pred EEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhh
Confidence 678899999999999876544 46889999999999998753320 0 013
Q ss_pred cCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC--eeEEEe----cCCCCCceEEEEEcCCCCEEEEEeCCCe
Q 001163 548 DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG--AVKRTY----HGLGKRSVGVVQFDTTKNRFLAAGDEFM 621 (1134)
Q Consensus 548 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 621 (1134)
.+|...|+++.|+|.+..|++++.|+ .+.+|...+. --+... .++........-|+|+++.+++-+..|.
T Consensus 264 ~GHeDWV~sv~W~p~~~~LLSASaDk----smiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHPEGLDLLSASADK----SMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred cCcccceEEEEEccchhhheecccCc----ceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence 46778999999999999999998765 4899987654 222222 1222335778899999999999999999
Q ss_pred EEEEEc-CCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccc
Q 001163 622 IKFWDM-DNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAP 700 (1134)
Q Consensus 622 i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1134)
.++|.. +...........+|...|..++|+|.|.+|++.+.|.+-|+|..-..+.....+.
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEia------------------ 401 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIA------------------ 401 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeec------------------
Confidence 999983 2333344444457789999999999999999999999999986431111111110
Q ss_pred ccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEE
Q 001163 701 AIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVS 780 (1134)
Q Consensus 701 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 780 (1134)
.++.|...++
T Consensus 402 ----------------------------------------------------------------------RPQiHGyDl~ 411 (764)
T KOG1063|consen 402 ----------------------------------------------------------------------RPQIHGYDLT 411 (764)
T ss_pred ----------------------------------------------------------------------ccccccccce
Confidence 0112566666
Q ss_pred EEEEecCCceeeeeccCCeEEeeecCCC----------------CCCcccccccCC---CCccc--CCCCCcc-------
Q 001163 781 RLIYTNSGLAILALASNAVHKLWKWPRN----------------ERNSTGKATTNQ---APQLW--QPPSGIL------- 832 (1134)
Q Consensus 781 ~l~~spdg~~l~~~~~dg~i~vw~~~~~----------------~~~~~~~~~~~~---~~~~~--d~~~~~~------- 832 (1134)
|++|-+....+++|.+...+|+|+.+.. ...+++..+... .--++ +..+|..
T Consensus 412 c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et 491 (764)
T KOG1063|consen 412 CLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAET 491 (764)
T ss_pred eeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeec
Confidence 7777665555666666667777765432 000111100000 00000 1111110
Q ss_pred ------------------ccc-CCC----CCCCCCCeeEEEEcCCCCeEEEee-C-----CeEEEEEccCCeEEEEecCC
Q 001163 833 ------------------MTN-DIS----DTNPEDAVPCFALSKNDSYVMSAS-G-----GKISLFNMMTFKTMTTFMPP 883 (1134)
Q Consensus 833 ------------------~~~-~~~----~~~h~~~v~~v~~s~dg~~la~~s-d-----g~i~lwd~~~~~~~~~~~~~ 883 (1134)
... ..+ -.||...|.+++.+|+|+++|+++ . ..|++|+..+...+..+.+|
T Consensus 492 ~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~H 571 (764)
T KOG1063|consen 492 PLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGH 571 (764)
T ss_pred ccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheeccc
Confidence 000 000 046999999999999999999996 2 24999999999999999999
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce----EEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCC
Q 001163 884 PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE----VKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGW 959 (1134)
Q Consensus 884 ~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~ 959 (1134)
.-.|+.++||| |+++|++.+.|+++.+|+..... .....+.|+.-|+++.|+|+++++||+|.|++|++|.....
T Consensus 572 sLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 572 SLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred ceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 99999999999 99999999999999999985432 13447789999999999999999999999999999998876
Q ss_pred ccccceeeeecCCCCCCCCCceEEEEcC----CCC-EEEEE-eeceEEEEeCCCcccc---e-------eeccCCCccCE
Q 001163 960 EKQASKFLTIPNGRTASALADTRVQFHL----DQT-HLLAV-HETQIAIYEAPKLECL---K-------QFVPREASGPI 1023 (1134)
Q Consensus 960 ~~~~~~~~~~~~~~~~~~~~v~~l~fs~----dg~-~l~~~-~d~~i~iwd~~~~~~~---~-------~~~~~~h~~~v 1023 (1134)
.... ..+.. -......++.+++.| +.. .+++| ..|.|.+|....-... . .-...+|.+.|
T Consensus 651 ~d~~--i~~~a--~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV 726 (764)
T KOG1063|consen 651 RDKY--ISRFA--CLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAV 726 (764)
T ss_pred hhhh--hhhhc--hhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhh
Confidence 3111 11100 111125688888765 223 55556 6799999996511110 0 01123568899
Q ss_pred EEEEEccC--------C--CEEEEEecCCcEEEeecC
Q 001163 1024 THATYSCD--------S--QSIYVAFEEGSVGVLTAS 1050 (1134)
Q Consensus 1024 ~~~~~s~d--------g--~~l~s~s~Dg~i~vwd~~ 1050 (1134)
+.++|+|- - ..|++|++|..++++++.
T Consensus 727 ~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 727 NRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred heeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 99999974 2 247999999999999874
No 19
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.8e-40 Score=331.32 Aligned_cols=286 Identities=19% Similarity=0.275 Sum_probs=261.0
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEEC
Q 001163 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA 494 (1134)
Q Consensus 415 ~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~ 494 (1134)
.|-+.+|..+.||+|++.|||||.+|.++||+..+...+. +|.||...|.++.|+|......++||+.||++++|++
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 3567899999999999999999999999999999876544 7999999999999999843236999999999999999
Q ss_pred CCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCC
Q 001163 495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKE 574 (1134)
Q Consensus 495 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 574 (1134)
.+..++..+.+|...|..++|+|++ ++|.|++.|.+-++||+.+.......++|...|.+++|.+||..+++|+.|.
T Consensus 249 ~~e~~l~~l~gH~~RVs~VafHPsG--~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~- 325 (459)
T KOG0272|consen 249 SQETPLQDLEGHLARVSRVAFHPSG--KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDS- 325 (459)
T ss_pred CCCcchhhhhcchhhheeeeecCCC--ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccc-
Confidence 9999999999999999999997655 8999999999999999999999999999999999999999999999998754
Q ss_pred CCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC-C
Q 001163 575 GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-E 653 (1134)
Q Consensus 575 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~ 653 (1134)
.-++||+++|+++-.+.+|.+ .|.++.|+|+|..+++||.|++++|||++..+.+..+..| ..-|+.|.|+| .
T Consensus 326 ---~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH--~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 326 ---LGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH--SNLVSQVKYSPQE 399 (459)
T ss_pred ---hhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc--cchhhheEecccC
Confidence 578999999999999999888 9999999999999999999999999999999999998866 67899999999 7
Q ss_pred CcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCC
Q 001163 654 GILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDS 733 (1134)
Q Consensus 654 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 733 (1134)
|.+|++++.|++++||...+. .+++.+.
T Consensus 400 g~fL~TasyD~t~kiWs~~~~-~~~ksLa--------------------------------------------------- 427 (459)
T KOG0272|consen 400 GYFLVTASYDNTVKIWSTRTW-SPLKSLA--------------------------------------------------- 427 (459)
T ss_pred CeEEEEcccCcceeeecCCCc-ccchhhc---------------------------------------------------
Confidence 899999999999999997766 4444443
Q ss_pred ccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeee
Q 001163 734 RNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK 804 (1134)
Q Consensus 734 ~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~ 804 (1134)
||.+.|.++.+++|+..+++++.|.++++|.
T Consensus 428 ----------------------------------------GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 428 ----------------------------------------GHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ----------------------------------------CCccceEEEEeccCCceEEEeccCceeeecc
Confidence 3888999999999999999999999999993
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-37 Score=298.19 Aligned_cols=296 Identities=21% Similarity=0.299 Sum_probs=251.8
Q ss_pred EEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163 350 VMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 428 (1134)
Q Consensus 350 ~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 428 (1134)
.-+++ |++.|+.++..+.+..++.+++.|.++.+|++.......-. ....+.||+..|..++.++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s~ 73 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLSS 73 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEcc
Confidence 34555 99999999999998889999999999999999765322111 1113789999999999999
Q ss_pred CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCC--
Q 001163 429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH-- 506 (1134)
Q Consensus 429 d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h-- 506 (1134)
||++.++++.|+++++||+.+|+..+ .|.||...|.+++|++|++ .++||+.|++|++|++. |.+..++..+
T Consensus 74 dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~~ 147 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDSH 147 (315)
T ss_pred CCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCCC
Confidence 99999999999999999999997555 6899999999999999999 59999999999999965 5555555443
Q ss_pred CcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC
Q 001163 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 586 (1134)
Q Consensus 507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 586 (1134)
.+.|.|++|+|+.+..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++++.+ +.+.+||++.
T Consensus 148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkd----g~~~LwdL~~ 223 (315)
T KOG0279|consen 148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKD----GEAMLWDLNE 223 (315)
T ss_pred cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCC----ceEEEEEccC
Confidence 789999999999877999999999999999999999999999999999999999999999998754 4599999999
Q ss_pred CeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCC-------CCCcceEEEcCCCcEEEE
Q 001163 587 GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG-------LQASPCIRFNKEGILLAV 659 (1134)
Q Consensus 587 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~sp~~~~l~~ 659 (1134)
++.+..+.... .|.+++|+|+...|+.+ .+..|+|||++++..+..+..... .....+++|+++|..|++
T Consensus 224 ~k~lysl~a~~--~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~ 300 (315)
T KOG0279|consen 224 GKNLYSLEAFD--IVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFA 300 (315)
T ss_pred CceeEeccCCC--eEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEe
Confidence 99988776654 89999999986555544 455699999999998887754321 223457899999999999
Q ss_pred EECCCcEEEEEcc
Q 001163 660 STNDNGIKILANA 672 (1134)
Q Consensus 660 ~~~dg~i~iw~~~ 672 (1134)
|..|+.|++|.+.
T Consensus 301 g~td~~irv~qv~ 313 (315)
T KOG0279|consen 301 GYTDNVIRVWQVA 313 (315)
T ss_pred eecCCcEEEEEee
Confidence 9999999999864
No 21
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-36 Score=317.95 Aligned_cols=475 Identities=16% Similarity=0.261 Sum_probs=354.8
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
+...|.++.|+|...++| ++-..|.|.|||.++...+.. +.-..-+|.+..|-+..++++
T Consensus 12 rSdRVKsVd~HPtePw~l-a~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWIL-AALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCceEE-EeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence 788999999999999764 678899999999999877654 223566999999999999999
Q ss_pred EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC-ceeEEecCCCcCEEEE
Q 001163 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSI 513 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~ 513 (1134)
+|++|..|+||++.+++.++ .+..|.+-|.+++.+|... +++|+|.|-+|++||.+.+ .+.++|.||...|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999988666 7999999999999999998 8999999999999999876 6788999999999999
Q ss_pred eccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCC--CEEEEEecCCCCCeEEEEEeCCCCeeEE
Q 001163 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG--ARLFSCGTNKEGESYLVEWNESEGAVKR 591 (1134)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 591 (1134)
+|+|... +.+++++.|++|++|.+....+..++.+|...|+++.+-+.| .+|++++. +..+++||.++..+++
T Consensus 147 ~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 147 AFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHHH
Confidence 9998654 799999999999999999999999999999999999998755 58998875 4579999999999999
Q ss_pred EecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163 592 TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (1134)
Q Consensus 592 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 671 (1134)
++.||.. .|..++|+|.-..+++|++||+++||+..+-++..++... ...+.|++-.+.++.+++|.+.|.+.+ .+
T Consensus 222 TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~Deg~i~v-~l 297 (794)
T KOG0276|consen 222 TLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFDEGSVTV-KL 297 (794)
T ss_pred Hhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence 9999998 8999999999999999999999999999998888887754 568999999998889999998888765 22
Q ss_pred cCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccccccc
Q 001163 672 ADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS 751 (1134)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 751 (1134)
-.... .++-+..|.
T Consensus 298 greeP-----------------------------------------------------------------~vsMd~~gK- 311 (794)
T KOG0276|consen 298 GREEP-----------------------------------------------------------------AVSMDSNGK- 311 (794)
T ss_pred cCCCC-----------------------------------------------------------------ceeecCCcc-
Confidence 11100 000000011
Q ss_pred ceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCc
Q 001163 752 RIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGI 831 (1134)
Q Consensus 752 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 831 (1134)
-+|... +.|..+-. -+.+.++ ++..|+
T Consensus 312 Iiwa~~-------------------~ei~~~~~-------ks~~~~~---------------------------ev~DgE 338 (794)
T KOG0276|consen 312 IIWAVH-------------------SEIQAVNL-------KSVGAQK---------------------------EVTDGE 338 (794)
T ss_pred EEEEcC-------------------ceeeeeec-------eeccCcc---------------------------cccCCc
Confidence 122211 01111100 0000000 122222
Q ss_pred ccccCCCCCC-CCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 001163 832 LMTNDISDTN-PEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQ 910 (1134)
Q Consensus 832 ~~~~~~~~~~-h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~ 910 (1134)
.+.......+ -.-....++.||+|+++++++||.-.||..-.. -....+......|++ |....|+-..++.|+
T Consensus 339 rL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~-----RnK~fG~~~eFvw~~-dsne~avRes~~~vk 412 (794)
T KOG0276|consen 339 RLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALAL-----RNKAFGSGLEFVWAA-DSNEFAVRESNGNVK 412 (794)
T ss_pred cccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeeh-----hhcccccceeEEEcC-CCCeEEEEecCCceE
Confidence 2221111100 011123578899999999999999888864221 122456677889999 767788888889999
Q ss_pred EEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCC
Q 001163 911 IYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQT 990 (1134)
Q Consensus 911 iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~ 990 (1134)
++ ++.+..+.+...-. +..--.|.+|...+ ++.+++||.++++... ..+ -....+.|+.+|.
T Consensus 413 i~--knfke~ksi~~~~~----~e~i~gg~Llg~~s-s~~~~fydW~~~~lVr-----rI~------v~~k~v~w~d~g~ 474 (794)
T KOG0276|consen 413 IF--KNFKEHKSIRPDMS----AEGIFGGPLLGVRS-SDFLCFYDWESGELVR-----RIE------VTSKHVYWSDNGE 474 (794)
T ss_pred EE--ecceeccccccccc----eeeecCCceEEEEe-CCeEEEEEcccceEEE-----EEe------eccceeEEecCCC
Confidence 98 56666555542211 11112355555555 5569999999876322 111 1245689999999
Q ss_pred EEEEEeeceEEEEeCC
Q 001163 991 HLLAVHETQIAIYEAP 1006 (1134)
Q Consensus 991 ~l~~~~d~~i~iwd~~ 1006 (1134)
+++.+.|...+++..+
T Consensus 475 lVai~~d~Sfyil~~n 490 (794)
T KOG0276|consen 475 LVAIAGDDSFYILKFN 490 (794)
T ss_pred EEEEEecCceeEEEec
Confidence 9999888887776654
No 22
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=8.5e-36 Score=325.50 Aligned_cols=564 Identities=14% Similarity=0.178 Sum_probs=405.6
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
+.+.|+|++=+.+-- ++|.| ..|.+|.- |+.+.. ...+|...|.-+. |=|.+++
T Consensus 75 lp~~I~alas~~~~v-y~A~g---~~i~~~~r--gk~i~~------------------~~~~~~a~v~~l~--~fGe~li 128 (910)
T KOG1539|consen 75 LPDKITALASDKDYV-YVASG---NKIYAYAR--GKHIRH------------------TTLLHGAKVHLLL--PFGEHLI 128 (910)
T ss_pred CCCceEEEEecCceE-EEecC---cEEEEEEc--cceEEE------------------EeccccceEEEEe--eecceEE
Confidence 678999998766643 22222 34666653 332221 2456777777665 4588999
Q ss_pred EEeCCCEEEEEEccCC-ceeeeeeee-ecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEE
Q 001163 435 VAYSKHIVHLYTYHGG-DELRNHLEI-EAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 512 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~-~~~~~~~~l-~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 512 (1134)
++..++.+.||+..++ ........+ +...+.|+++ ++|..--..++.|+.+|.+.+|++++++.+++++++...|++
T Consensus 129 a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ 207 (910)
T KOG1539|consen 129 AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITA 207 (910)
T ss_pred EEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeE
Confidence 9999999999999885 221111112 2222237766 456543225899999999999999999999999999999999
Q ss_pred EeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEE
Q 001163 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT 592 (1134)
Q Consensus 513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 592 (1134)
+.-+|.- +.++.|..+|+|.+++++..+....+....+.|++++|..||+.+++.+.. .+.+.+||++..+.+..
T Consensus 208 ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~---~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 208 IEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRS---NGDMAFWDLEKKKLINV 282 (910)
T ss_pred eccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccC---CceEEEEEcCCCeeeee
Confidence 9866555 689999999999999999999999998877899999999999987766532 34599999999998888
Q ss_pred ecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce--eEEEecCCCCCCcceEEEc-CCCcEEEEEECCCcEEEE
Q 001163 593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL--LASIDADGGLQASPCIRFN-KEGILLAVSTNDNGIKIL 669 (1134)
Q Consensus 593 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s-p~~~~l~~~~~dg~i~iw 669 (1134)
....+.+.+....|.|....+++++.|..+++|=.+++.- .......||..+..|+.|. .+|..+.+++.|++++.+
T Consensus 283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~f 362 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSF 362 (910)
T ss_pred eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhh
Confidence 8755555888999999999999999999998886554332 2222223567788999998 588999999999999998
Q ss_pred EccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccc-ccccccccc
Q 001163 670 ANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDV-KPKIADEAV 748 (1134)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d 748 (1134)
++.........-+.|.... ....+ .+++. ......+..|.-+.....+. +.+.+.-.+
T Consensus 363 s~~~e~~~~~l~~~~~~~~-------------~kk~~----~~~~~----~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~ 421 (910)
T KOG1539|consen 363 SVISESQSQELGQLHNKKR-------------AKKVN----VFSTE----KLKLPPIVEFAFENAREKEWDNVITAHKGK 421 (910)
T ss_pred hhhHHHHhHhhcccccccc-------------ccccc----ccchh----hhcCCcceeeecccchhhhhcceeEEecCc
Confidence 8754311000000000000 00000 00000 01112233333222222223 333444556
Q ss_pred cccceeeecccCCccc-eeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCC
Q 001163 749 EKSRIWKLTEITEPSQ-CRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQP 827 (1134)
Q Consensus 749 ~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~ 827 (1134)
...+.|++.......- ...-. .+.....+++++.++.|++.+.|++.|.|-+|+++.
T Consensus 422 ~~~~tW~~~n~~~G~~~L~~~~--~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS-------------------- 479 (910)
T KOG1539|consen 422 RSAYTWNFRNKTSGRHVLDPKR--FKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS-------------------- 479 (910)
T ss_pred ceEEEEeccCcccccEEecCcc--ccccCcceEEEEEeccCceEEEeccCCeEEEEEccc--------------------
Confidence 6889999886543221 11111 112457899999999999999999999999997764
Q ss_pred CCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCC
Q 001163 828 PSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED 906 (1134)
Q Consensus 828 ~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~d 906 (1134)
|...........|.++|+.++...-++.+++++ +|.+++||..+...+..++ -...++++.++. ...++|.+.+|
T Consensus 480 --Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr-~s~l~a~~~dd 555 (910)
T KOG1539|consen 480 --GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR-VSDLLAIALDD 555 (910)
T ss_pred --CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee-hhhhhhhhcCc
Confidence 222222211224999999999999999999888 9999999999988887776 556788888888 77899999999
Q ss_pred CcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEc
Q 001163 907 SSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFH 986 (1134)
Q Consensus 907 g~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs 986 (1134)
-.|+++|..+.+.++.|.+|.++|++++|||||++|++++.|++|++||+.++.... ...-. ..++++.||
T Consensus 556 f~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID-----~~~vd----~~~~sls~S 626 (910)
T KOG1539|consen 556 FSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLID-----GLLVD----SPCTSLSFS 626 (910)
T ss_pred eeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceee-----eEecC----CcceeeEEC
Confidence 999999999999999999999999999999999999999999999999999976332 21111 458999999
Q ss_pred CCCCEEEEE-ee-ceEEEEeCC
Q 001163 987 LDQTHLLAV-HE-TQIAIYEAP 1006 (1134)
Q Consensus 987 ~dg~~l~~~-~d-~~i~iwd~~ 1006 (1134)
|.|.+||++ .| ..|++|--.
T Consensus 627 PngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 627 PNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred CCCCEEEEEEecCceEEEEEch
Confidence 999999996 33 568888643
No 23
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.8e-37 Score=294.94 Aligned_cols=291 Identities=16% Similarity=0.279 Sum_probs=261.7
Q ss_pred EEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163 350 VMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 428 (1134)
Q Consensus 350 ~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 428 (1134)
.++|+ |...|.++.|++|.++ ++++|.||.+.|||.-+..+.+. +.-....|..+||+|
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~sP 107 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYSP 107 (343)
T ss_pred EEEecccccceeeeEecCCcCe-EEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEECC
Confidence 46676 9999999999999995 58999999999999988876654 334677999999999
Q ss_pred CCCEEEEEeCCCEEEEEEccCC--c-eeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecC
Q 001163 429 DGTLFGVAYSKHIVHLYTYHGG--D-ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 505 (1134)
Q Consensus 429 d~~~las~s~dg~v~iwd~~~~--~-~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 505 (1134)
.|+++|+|+-|+...||++.+. + ..+....+.+|.+.+.|+.|.+|+. |+|+|.|.+..+||+++|+.+..|.+
T Consensus 108 Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~G 184 (343)
T KOG0286|consen 108 SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHG 184 (343)
T ss_pred CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecC
Confidence 9999999999999999999855 1 1234446899999999999998775 99999999999999999999999999
Q ss_pred CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC
Q 001163 506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 585 (1134)
Q Consensus 506 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 585 (1134)
|.+.|.++.+.|+ +++.+++|+-|+..++||++.+.+...+.+|...|++++|.|+|.-+++|+.|+ ..++||++
T Consensus 185 H~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~----tcRlyDlR 259 (343)
T KOG0286|consen 185 HTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDA----TCRLYDLR 259 (343)
T ss_pred CcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCc----eeEEEeec
Confidence 9999999999774 668999999999999999999999999999999999999999999999998644 69999999
Q ss_pred CCeeEEEecCCC-CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC
Q 001163 586 EGAVKRTYHGLG-KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 664 (1134)
Q Consensus 586 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg 664 (1134)
..+.+..|.... ..+|++++|+..|++|++|..|..+.+||.-.++.+..+.+| ...|.|+..+|||..+++|+.|.
T Consensus 260 aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH--eNRvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 260 ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH--ENRVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred CCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc--CCeeEEEEECCCCcEEEecchhH
Confidence 999888887543 347899999999999999999999999999999999999866 66999999999999999999999
Q ss_pred cEEEEE
Q 001163 665 GIKILA 670 (1134)
Q Consensus 665 ~i~iw~ 670 (1134)
+++||.
T Consensus 338 ~lriW~ 343 (343)
T KOG0286|consen 338 TLRIWA 343 (343)
T ss_pred heeecC
Confidence 999994
No 24
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.9e-35 Score=316.36 Aligned_cols=591 Identities=16% Similarity=0.190 Sum_probs=411.4
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCC---EEEEEeC
Q 001163 362 MDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT---LFGVAYS 438 (1134)
Q Consensus 362 v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~---~las~s~ 438 (1134)
..|.|.+ ++|.| ....|.+||........ .+.||..+|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafG-a~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFG-AGPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEec-CCceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 3455555 34444 45679999987653222 3789999999999999888 9999999
Q ss_pred CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEE-eCCCeEEEEECCCCc--eeEEecCCCcCEE--EE
Q 001163 439 KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTC-GEDRVIKVWDAVTGT--KQYIFEGHESPVY--SI 513 (1134)
Q Consensus 439 dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~-s~d~~i~iwd~~~~~--~~~~~~~h~~~v~--~~ 513 (1134)
|+.|++|.++... +.+...+.+|...+.|+ ...-. +.++ ..|+++.+||.+..+ ++..++-....+. |+
T Consensus 78 D~~v~lW~l~~~~-~~~i~~~~g~~~~~~cv--~a~~~---~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL 151 (764)
T KOG1063|consen 78 DGRVILWKLRDEY-LIKIYTIQGHCKECVCV--VARSS---VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCL 151 (764)
T ss_pred CCcEEEEEEeehh-eEEEEeecCcceeEEEE--Eeeee---EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHH
Confidence 9999999999433 44555788876655554 43332 3333 789999999985555 3333332222333 34
Q ss_pred eccccCCccEEEEecCCCcEEEEecCCC--CceeeecCCCCCeeEEEECcCCC---EEEEEecCCCCCeEEEEEeCCCCe
Q 001163 514 CPHHKENIQFIFSTATDGKIKAWLYDNL--GSRVDYDAPGHSSTMMAYSADGA---RLFSCGTNKEGESYLVEWNESEGA 588 (1134)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~~~~~~~~i~~wd~~~~~ 588 (1134)
++.++++.-+++.|+.+..|.++.-... .....+.+|...|.+++|...+. +|++++. +..|++|.+.-+.
T Consensus 152 ~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQ----D~yIRiW~i~~~~ 227 (764)
T KOG1063|consen 152 AALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQ----DRYIRIWRIVLGD 227 (764)
T ss_pred hhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCC----ceEEEEEEEEecC
Confidence 4444344345667777888888865433 33456788888999999987554 4555543 5679999764222
Q ss_pred ---------------------eE----------EEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC--ceeEE
Q 001163 589 ---------------------VK----------RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV--NLLAS 635 (1134)
Q Consensus 589 ---------------------~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~ 635 (1134)
.. ..+.||.+ .|.++.|+|.+..|++++.|.++.+|...+. -.+..
T Consensus 228 ~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~ 306 (764)
T KOG1063|consen 228 DEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDV 306 (764)
T ss_pred CccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEE
Confidence 11 11237776 9999999999999999999999999987654 33332
Q ss_pred Ee--cC-CCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccccccccccccccc
Q 001163 636 ID--AD-GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANV 712 (1134)
Q Consensus 636 ~~--~~-~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1134)
.. .- +.........|+|++..+++-+..|..++|...+. .
T Consensus 307 vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~--~----------------------------------- 349 (764)
T KOG1063|consen 307 VRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK--T----------------------------------- 349 (764)
T ss_pred EEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc--c-----------------------------------
Confidence 22 11 22334678999999999999999999999983222 0
Q ss_pred ccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceee
Q 001163 713 GTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAIL 792 (1134)
Q Consensus 713 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~ 792 (1134)
.|... ....||...|+.++|.|.|.+|+
T Consensus 350 ----------------------------------------~w~~~------------~~iSGH~~~V~dv~W~psGeflL 377 (764)
T KOG1063|consen 350 ----------------------------------------FWTQE------------PVISGHVDGVKDVDWDPSGEFLL 377 (764)
T ss_pred ----------------------------------------ceeec------------cccccccccceeeeecCCCCEEE
Confidence 11111 01125889999999999999999
Q ss_pred eeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEc
Q 001163 793 ALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNM 871 (1134)
Q Consensus 793 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~ 871 (1134)
+.+.|.+-|+|---.++. -| ..+.+ .+-|...++|++|-+....+++|. ...+|+|+.
T Consensus 378 svs~DQTTRlFa~wg~q~-------------~w-----HEiaR---PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~a 436 (764)
T KOG1063|consen 378 SVSLDQTTRLFARWGRQQ-------------EW-----HEIAR---PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEA 436 (764)
T ss_pred Eeccccceeeeccccccc-------------ce-----eeecc---cccccccceeeehccCCceeeecccceeeeeecC
Confidence 999999999873221100 01 11111 112888999999988555666666 466888875
Q ss_pred cC-------------------------------------------CeE--------------------------------
Q 001163 872 MT-------------------------------------------FKT-------------------------------- 876 (1134)
Q Consensus 872 ~~-------------------------------------------~~~-------------------------------- 876 (1134)
.. |..
T Consensus 437 Pk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwP 516 (764)
T KOG1063|consen 437 PKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWP 516 (764)
T ss_pred cHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccch
Confidence 10 000
Q ss_pred -EEEecCCCCCeEEEEEcCCCCcEEEEEeCCC-----cEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCc
Q 001163 877 -MTTFMPPPPAATFLAFHPQDNNIIAIGMEDS-----SIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQ 950 (1134)
Q Consensus 877 -~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg-----~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~ 950 (1134)
+..+.||..+|.+++.+| +++++|+++... .|++|+..+...+..+.+|+-.|+.++|||||++|++.|.|.+
T Consensus 517 Ev~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt 595 (764)
T KOG1063|consen 517 EVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT 595 (764)
T ss_pred hhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce
Confidence 001124778899999999 999999997654 6999999998888899999999999999999999999999999
Q ss_pred EEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCc--ccceeeccCCCccCEEEEE
Q 001163 951 LCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKL--ECLKQFVPREASGPITHAT 1027 (1134)
Q Consensus 951 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~--~~~~~~~~~~h~~~v~~~~ 1027 (1134)
+.+|+..........+.. ...|. --|-++.|+||++++++ +.|.+|.||..... +.+..+.+..++..|+.++
T Consensus 596 ~sl~~~~~~~~~e~~fa~-~k~Ht---RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~ 671 (764)
T KOG1063|consen 596 VSLYEVQEDIKDEFRFAC-LKAHT---RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVA 671 (764)
T ss_pred EEeeeeecccchhhhhcc-ccccc---eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEE
Confidence 999998765544333222 33333 24678889999999999 69999999999988 7777766667899999999
Q ss_pred Ecc-----CCCEEEEEecCCcEEEeecCCCcceeecC---CCccc--CCCCCCCceeEEEEecCCC---------CCEEE
Q 001163 1028 YSC-----DSQSIYVAFEEGSVGVLTASTLRLRCRIN---PTAYL--PTNPSLRVYPLVIAGNPTD---------PNQFA 1088 (1134)
Q Consensus 1028 ~s~-----dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~---~~~~~--~~~h~~~v~~~~~~~~p~~---------~~~l~ 1088 (1134)
+.| .+..++.|-+.|.|.+|....-....... ....+ ..+|.+.|.-+ .|.|.. ...|+
T Consensus 672 ~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl--~w~p~~~~~~~~~~~~l~la 749 (764)
T KOG1063|consen 672 YLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRL--LWRPTCSDDWVEDKEWLNLA 749 (764)
T ss_pred eeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhhee--EeccccccccccccceeEEe
Confidence 976 23367888899999999966221111111 00001 11366777766 677642 22579
Q ss_pred EEecCCcEEEEeCC
Q 001163 1089 LGLTDGGVYIIEPL 1102 (1134)
Q Consensus 1089 s~~~Dg~v~vW~~~ 1102 (1134)
+|++|.+++++++.
T Consensus 750 ~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 750 VGGDDESVRIFNVD 763 (764)
T ss_pred eecccceeEEeecc
Confidence 99999999999875
No 25
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.4e-37 Score=336.98 Aligned_cols=276 Identities=17% Similarity=0.295 Sum_probs=239.9
Q ss_pred CCCCCceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceee---eceee---------eeccccCcc
Q 001163 342 TDDLPKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAV---KSFKV---------WELGACSMP 408 (1134)
Q Consensus 342 ~d~~~~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~---~~~~~---------~~~~~~~~~ 408 (1134)
.+.++..+..++. ....++|+.||+|++ ++|.|-.|..|++|.+...+.... ..+.- -++......
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 5667788888877 568999999999999 789999999999999986432110 00000 011122222
Q ss_pred ccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCe
Q 001163 409 LQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV 488 (1134)
Q Consensus 409 ~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~ 488 (1134)
.....+.||+++|..+.|+|+.++|+++|.|++||+|.+.+..++. ...||..+|+.+.|+|.|- +++|+|.|++
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t 516 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT 516 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence 3333588999999999999999999999999999999999987665 6789999999999999998 8999999999
Q ss_pred EEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEE
Q 001163 489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFS 568 (1134)
Q Consensus 489 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 568 (1134)
.++|......+++.|.+|-+.|.|+.|+|+. .++++||.|.+||+||+.++..+..+.+|..+|.+++|||+|++|++
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence 9999999999999999999999999998766 89999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 001163 569 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV 630 (1134)
Q Consensus 569 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 630 (1134)
++.+ +.|.+||+.+++.+..+.+|.+ .+.++.|+.+|..|++|+.|.+|++||+..-
T Consensus 595 g~ed----~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 595 GDED----GLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cccC----CcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9764 4699999999999999999955 9999999999999999999999999998653
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-35 Score=310.82 Aligned_cols=459 Identities=15% Similarity=0.218 Sum_probs=351.3
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 493 (1134)
+..|+..|.++.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-+.-+ ++++|+.|..|+|++
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 45589999999999999999999999999999999988777 6777888999999998777 899999999999999
Q ss_pred CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCC-CceeeecCCCCCeeEEEECc-CCCEEEEEec
Q 001163 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVDYDAPGHSSTMMAYSA-DGARLFSCGT 571 (1134)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 571 (1134)
..+++.++.|.+|...|.+++.+|.. .+++++|.|-+|++||.+.. .+...+++|.+-|.+++|.| |.+.+++++.
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999999877 79999999999999999864 46678999999999999999 5678999987
Q ss_pred CCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCC--CEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEE
Q 001163 572 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK--NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR 649 (1134)
Q Consensus 572 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 649 (1134)
|+ +|++|.+.+..+..++.+|.. .|+++++-+.| .+|++|++|.+|+|||.++..+++++.+| ...|+.+.
T Consensus 162 Dr----TVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH--t~Nvs~v~ 234 (794)
T KOG0276|consen 162 DR----TVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH--TNNVSFVF 234 (794)
T ss_pred cc----cEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc--cccceEEE
Confidence 65 599999999999999999998 89999997654 79999999999999999999999999966 66899999
Q ss_pred EcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCC
Q 001163 650 FNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM 729 (1134)
Q Consensus 650 ~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 729 (1134)
|+|.-..+++|+.||++|||+..+- ++..++.-
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~---------------------------------------------- 267 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNY---------------------------------------------- 267 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhhhc----------------------------------------------
Confidence 9999999999999999999997654 11111100
Q ss_pred CCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCC
Q 001163 730 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNE 809 (1134)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~ 809 (1134)
.-.++.+++..+.+..+++|..+|.+.+=
T Consensus 268 ---------------------------------------------gleRvW~I~~~k~~~~i~vG~Deg~i~v~------ 296 (794)
T KOG0276|consen 268 ---------------------------------------------GLERVWCIAAHKGDGKIAVGFDEGSVTVK------ 296 (794)
T ss_pred ---------------------------------------------CCceEEEEeecCCCCeEEEeccCCcEEEE------
Confidence 23456677777777778888888877651
Q ss_pred CCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeC--CeEEEE------EccCCeEEEE--
Q 001163 810 RNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASG--GKISLF------NMMTFKTMTT-- 879 (1134)
Q Consensus 810 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sd--g~i~lw------d~~~~~~~~~-- 879 (1134)
-......+.+++.|+.+-+... -.+.+- ++..|+.+..
T Consensus 297 --------------------------------lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~Lsv 344 (794)
T KOG0276|consen 297 --------------------------------LGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSV 344 (794)
T ss_pred --------------------------------ccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchh
Confidence 1122224555566654433321 111111 2233333221
Q ss_pred --ecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECC
Q 001163 880 --FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTD 957 (1134)
Q Consensus 880 --~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~ 957 (1134)
+-.-.-....++-+| +|+++++++ ||.-.||..-..+ ..+-+.-....|++|....+.--.++.|+++ +
T Consensus 345 KeLgs~eiyPq~L~hsP-NGrfV~Vcg-dGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--k 415 (794)
T KOG0276|consen 345 KELGSVEIYPQTLAHSP-NGRFVVVCG-DGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--K 415 (794)
T ss_pred hhccccccchHHhccCC-CCcEEEEec-CccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--e
Confidence 111111234578888 888776654 8888888743211 1244556788999998888888778889988 3
Q ss_pred CCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEE
Q 001163 958 GWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYV 1037 (1134)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s 1037 (1134)
..+..+ .+.. -..+.+--.|.+|.+-.++.+++||.++++.++.+.. ....+.|+.+|.+++.
T Consensus 416 nfke~k--si~~----------~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v-----~~k~v~w~d~g~lVai 478 (794)
T KOG0276|consen 416 NFKEHK--SIRP----------DMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEV-----TSKHVYWSDNGELVAI 478 (794)
T ss_pred cceecc--cccc----------ccceeeecCCceEEEEeCCeEEEEEcccceEEEEEee-----ccceeEEecCCCEEEE
Confidence 322111 1110 1113333456667777889999999999999998863 4467899999999988
Q ss_pred EecCC
Q 001163 1038 AFEEG 1042 (1134)
Q Consensus 1038 ~s~Dg 1042 (1134)
+++|.
T Consensus 479 ~~d~S 483 (794)
T KOG0276|consen 479 AGDDS 483 (794)
T ss_pred EecCc
Confidence 88764
No 27
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-35 Score=320.10 Aligned_cols=500 Identities=15% Similarity=0.231 Sum_probs=340.2
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
....|..++|+|...++ .++-..|.|.+||..-+.++.. +.+|.++|..++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rPwI-LtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWI-LTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCCEE-EEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 45688999999999965 5788999999999999988774 789999999999999999999
Q ss_pred EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEe
Q 001163 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC 514 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 514 (1134)
+|++|..|+||++++.+++. ++.||-+.|..+.|++.-. +++|+|.|.+|+||++.+++++..+.||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999987665 7999999999999999888 899999999999999999999999999999999999
Q ss_pred ccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEec
Q 001163 515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594 (1134)
Q Consensus 515 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 594 (1134)
|+|.. +.++++|.|.+||+||+...+....-.+ ++.=...+..+ . .-++-....-....+.
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~---~--------~dLfg~~DaVVK~VLE 203 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQG---N--------SDLFGQTDAVVKHVLE 203 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCC------Cchhhhhcccc---c--------hhhcCCcCeeeeeeec
Confidence 99877 6899999999999999975433322111 01000111111 0 0011111123345678
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 595 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
||.. .|+.++|+|.-..+++|++|+.|++|.+..-+.-..-...+|...|.++-|+|...++++.+.|++|++||+...
T Consensus 204 GHDR-GVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 204 GHDR-GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred cccc-ccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence 8887 899999999999999999999999999987665444444566889999999999999999999999999999776
Q ss_pred ceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccccccccee
Q 001163 675 IRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIW 754 (1134)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw 754 (1134)
..+++++.
T Consensus 283 -t~v~tfrr----------------------------------------------------------------------- 290 (1202)
T KOG0292|consen 283 -TSVQTFRR----------------------------------------------------------------------- 290 (1202)
T ss_pred -cceeeeec-----------------------------------------------------------------------
Confidence 33433321
Q ss_pred eecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccc
Q 001163 755 KLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMT 834 (1134)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 834 (1134)
...+...++.+|..+.+++|. |+-+.||.++.
T Consensus 291 --------------------endRFW~laahP~lNLfAAgH-DsGm~VFkleR--------------------------- 322 (1202)
T KOG0292|consen 291 --------------------ENDRFWILAAHPELNLFAAGH-DSGMIVFKLER--------------------------- 322 (1202)
T ss_pred --------------------cCCeEEEEEecCCcceeeeec-CCceEEEEEcc---------------------------
Confidence 234566778889988665555 55556665542
Q ss_pred cCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeE--EEEecCC---CCCeEEEEEcCCCCcEEEEEeCC-Cc
Q 001163 835 NDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MTTFMPP---PPAATFLAFHPQDNNIIAIGMED-SS 908 (1134)
Q Consensus 835 ~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~--~~~~~~~---~~~v~~l~~sp~~~~~la~g~~d-g~ 908 (1134)
+.++. +++ +..|.-.-|..|+-+|+.+.+. +..++.. ..+..++.|+|..+..+++...| |.
T Consensus 323 --------Erpa~--~v~--~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~ 390 (1202)
T KOG0292|consen 323 --------ERPAY--AVN--GNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGE 390 (1202)
T ss_pred --------cCceE--EEc--CCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCe
Confidence 23333 332 3334444488899999987543 3334433 35788999999555555554433 34
Q ss_pred EEEEEcccceEEE-e--ccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEE
Q 001163 909 IQIYNVRVDEVKT-K--LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQF 985 (1134)
Q Consensus 909 i~iwd~~~~~~~~-~--l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~f 985 (1134)
..++.+....... . -........++-.+ .+++.+---.+..+.+=++..... +.++.+. .+..+-+
T Consensus 391 y~L~~ipk~~~~~~~~~~~~k~tG~~a~fva-rNrfavl~k~~~~v~ik~l~N~vt---kkl~~~~-------~~~~IF~ 459 (1202)
T KOG0292|consen 391 YELVQIPKDSDGVSDGKDVKKGTGEGALFVA-RNRFAVLDKSNEQVVIKNLKNKVT---KKLLLPE-------STDDIFY 459 (1202)
T ss_pred EEEEEecCcccccCCchhhhcCCCCceEEEE-ecceEEEEecCcceEEecccchhh---hcccCcc-------cccceee
Confidence 4444443221000 0 00011112222222 222333333344555555554221 1122111 1344555
Q ss_pred cCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEee
Q 001163 986 HLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLT 1048 (1134)
Q Consensus 986 s~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd 1048 (1134)
.-+|.+|+. +...|.+||+...+.+..+. ...|.-++||+|..+++--+. .+|.|.+
T Consensus 460 ag~g~lll~-~~~~v~lfdvQq~~~~~si~----~s~vkyvvws~dm~~vAll~K-h~i~i~~ 516 (1202)
T KOG0292|consen 460 AGTGNLLLR-SPDSVTLFDVQQKKKVGSIK----VSKVKYVVWSNDMSRVALLSK-HTITIAD 516 (1202)
T ss_pred ccCccEEEE-cCCeEEEEEeecceEEEEEe----cCceeEEEEcCccchhhhccc-ceEEEEe
Confidence 555554443 45567777777777666665 456777777777776554442 3444444
No 28
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.8e-36 Score=290.21 Aligned_cols=287 Identities=17% Similarity=0.227 Sum_probs=258.8
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 492 (1134)
+++||.+.|.++.|++|+++|+++|.||.+.|||.-+..... -+.-....|..++|+|.|+ +++.|+-|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 478999999999999999999999999999999998866444 4556778999999999999 89999999999999
Q ss_pred ECCCC------ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECc-CCCE
Q 001163 493 DAVTG------TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA-DGAR 565 (1134)
Q Consensus 493 d~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 565 (1134)
++.+. +..+.+.+|.+.+.++.|.. | ..|+++|.|.+..+||++++.....+.+|.+.|.++.++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcC--C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 99855 34567899999999999854 3 6899999999999999999999999999999999999999 9999
Q ss_pred EEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCc
Q 001163 566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS 645 (1134)
Q Consensus 566 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 645 (1134)
+++++-|+ ..++||++.+.++++|.+|.. .|++++|.|+|.-+++|++|++.++||++..+.+..+........|
T Consensus 202 FvSg~cD~----~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 202 FVSGGCDK----SAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGI 276 (343)
T ss_pred EEeccccc----ceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCc
Confidence 99998654 589999999999999999998 8999999999999999999999999999999999999887777889
Q ss_pred ceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCccccc
Q 001163 646 PCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAA 725 (1134)
Q Consensus 646 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 725 (1134)
++++|+..|++|++|..|.++.+||.-.+ +....+.
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L~------------------------------------------- 312 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVLA------------------------------------------- 312 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeecccc-ceEEEee-------------------------------------------
Confidence 99999999999999999999999997655 2222221
Q ss_pred ccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeee
Q 001163 726 MVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK 804 (1134)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~ 804 (1134)
+|.++|+++..+|||..+++++.|..++||.
T Consensus 313 ------------------------------------------------GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 313 ------------------------------------------------GHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ------------------------------------------------ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 3899999999999999999999999999993
No 29
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-35 Score=284.34 Aligned_cols=296 Identities=17% Similarity=0.200 Sum_probs=250.0
Q ss_pred ccccccEEEEEEecC-CceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEE
Q 001163 773 NLTAMRVSRLIYTNS-GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFAL 851 (1134)
Q Consensus 773 ~~~~~~i~~l~~spd-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~ 851 (1134)
.+|.+.|+.++..+. ...+++++.|..+.+|++... |.+.|.++.. +.| |...|..++.
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~-~~G--HsH~v~dv~~ 71 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR-LTG--HSHFVSDVVL 71 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee-eec--cceEecceEE
Confidence 459999999999887 556778888999999998753 4455555543 555 9999999999
Q ss_pred cCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccC-ccCc
Q 001163 852 SKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG-HQKR 929 (1134)
Q Consensus 852 s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~-h~~~ 929 (1134)
++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|.+|.+|+...+........ |.+-
T Consensus 72 s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~W 150 (315)
T KOG0279|consen 72 SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREW 150 (315)
T ss_pred ccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCc
Confidence 99999999999 99999999999999999999999999999999 889999999999999999886544433333 3788
Q ss_pred eEEEEEeeC--CCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCC
Q 001163 930 ITGLAFSNT--LNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAP 1006 (1134)
Q Consensus 930 V~~l~~s~d--~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~ 1006 (1134)
|.|+.|+|+ ..+++++|.|++|++||+.+-+ ....+-||. ..++.+++||||...++ +.||.+.+||++
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~LwdL~ 222 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLWDLN 222 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEEEcc
Confidence 999999998 7899999999999999999844 444555665 57999999999999999 589999999999
Q ss_pred CcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCE
Q 001163 1007 KLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQ 1086 (1134)
Q Consensus 1007 ~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~ 1086 (1134)
.++.+..+ +|...|.+++|+|+.-.|+.+. +..|+|||++++..+..+.+...-++.-.+.+.++.++|++ ||..
T Consensus 223 ~~k~lysl---~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~-dG~t 297 (315)
T KOG0279|consen 223 EGKNLYSL---EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA-DGQT 297 (315)
T ss_pred CCceeEec---cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC-CCcE
Confidence 99997666 5789999999999977776554 55699999999998877765443333345567888999999 7999
Q ss_pred EEEEecCCcEEEEeCC
Q 001163 1087 FALGLTDGGVYIIEPL 1102 (1134)
Q Consensus 1087 l~s~~~Dg~v~vW~~~ 1102 (1134)
|+.|..|+.|++|.+.
T Consensus 298 Lf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 298 LFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEeeecCCcEEEEEee
Confidence 9999999999999875
No 30
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=2.2e-33 Score=289.14 Aligned_cols=539 Identities=17% Similarity=0.193 Sum_probs=386.3
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCC
Q 001163 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 440 (1134)
Q Consensus 361 ~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg 440 (1134)
.+-+-|.|..+..++ ..+.+++++...+. .+.||+..|.|++.+||.-.+|+|-..|
T Consensus 70 Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr--------------------~y~GH~ddikc~~vHPdri~vatGQ~ag 126 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVA---AVGVLYNWEERSQR--------------------HYLGHNDDIKCMAVHPDRIRVATGQGAG 126 (626)
T ss_pred eeEEccCccEEEEec---cEEEEEeehhhhcc--------------------cccCCCCceEEEeecCCceeeccCcccc
Confidence 456677777444333 34677777553322 2689999999999999999999875544
Q ss_pred --------EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCc--eEEEEEeCCCeEEEEECCCCceeEEecCCCcCE
Q 001163 441 --------IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQ--LSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV 510 (1134)
Q Consensus 441 --------~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v 510 (1134)
.|+|||..+-..+. .+..-...|+|++|++-+.. +..+--+.+..+.+||...+......+.....|
T Consensus 127 ~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v 203 (626)
T KOG2106|consen 127 TSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVV 203 (626)
T ss_pred cCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceE
Confidence 49999987744343 56667778999999985332 222334556688999999998888787777888
Q ss_pred EEEeccccCCccEEEEecCCCcEEEEecCCCCceee---ecC-CCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC
Q 001163 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD---YDA-PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 586 (1134)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 586 (1134)
....|+|... +++++++. +.+.+|+++.+..... ++. ....|.+++|.++|..+- + |..+.|.+|+..+
T Consensus 204 ~~a~FHPtd~-nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT-g----DS~G~i~Iw~~~~ 276 (626)
T KOG2106|consen 204 FLATFHPTDP-NLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT-G----DSGGNILIWSKGT 276 (626)
T ss_pred EEEEeccCCC-cEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe-e----cCCceEEEEeCCC
Confidence 8899998765 56666664 8999999886554332 222 224799999999998654 3 3456799999998
Q ss_pred CeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcE
Q 001163 587 GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI 666 (1134)
Q Consensus 587 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i 666 (1134)
.+..+....|.. .|.+++...+|. |++|+.|+.|..|| ..-+.++.++.+...+.+..++=...+ |++|...+.|
T Consensus 277 ~~~~k~~~aH~g-gv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~i 351 (626)
T KOG2106|consen 277 NRISKQVHAHDG-GVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFI 351 (626)
T ss_pred ceEEeEeeecCC-ceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccceE
Confidence 888888776665 899999999885 45599999999999 555555555555556667666544322 6677766666
Q ss_pred EEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccc
Q 001163 667 KILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADE 746 (1134)
Q Consensus 667 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (1134)
..=.++++..+..
T Consensus 352 L~Gt~~~~f~~~v------------------------------------------------------------------- 364 (626)
T KOG2106|consen 352 LQGTLENGFTLTV------------------------------------------------------------------- 364 (626)
T ss_pred EEeeecCCceEEE-------------------------------------------------------------------
Confidence 5444443311110
Q ss_pred cccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccC
Q 001163 747 AVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQ 826 (1134)
Q Consensus 747 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d 826 (1134)
.+|......++.+|+...+++++.|+.+++|+-.. .+|.
T Consensus 365 --------------------------~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k---------------~~wt 403 (626)
T KOG2106|consen 365 --------------------------QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHK---------------LEWT 403 (626)
T ss_pred --------------------------EecccceeeEEcCCChhheeeccCcceEEEccCCc---------------eeEE
Confidence 13556677888999999999999999999997111 1222
Q ss_pred CCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeC
Q 001163 827 PPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGME 905 (1134)
Q Consensus 827 ~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~ 905 (1134)
.. -..++.++.|+|.| .+|.|. .|...+.|.++...+..-. ...+++++.|+| +|.+||+|+.
T Consensus 404 ~~-------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp-~G~~lAvgs~ 467 (626)
T KOG2106|consen 404 KI-------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSP-DGAFLAVGSH 467 (626)
T ss_pred EE-------------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcC-CCCEEEEecC
Confidence 11 35778899999999 888888 8999999999966655544 488999999999 9999999999
Q ss_pred CCcEEEEEcccc-eEEEec-cCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEE
Q 001163 906 DSSIQIYNVRVD-EVKTKL-KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRV 983 (1134)
Q Consensus 906 dg~i~iwd~~~~-~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l 983 (1134)
|+.|+||.+..+ ...... +.|..+|+.+.||+|+++|.+-+.|-.|..|.... -++. ..+..+
T Consensus 468 d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~-~~~~--------------ts~kDv 532 (626)
T KOG2106|consen 468 DNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE-CKQI--------------TSVKDV 532 (626)
T ss_pred CCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc-Cccc--------------ceecce
Confidence 999999998754 333332 22448999999999999999999999999994322 1110 112333
Q ss_pred EEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcc
Q 001163 984 QFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAY 1063 (1134)
Q Consensus 984 ~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~ 1063 (1134)
.|....-.| | + ......|...|..++-|.++++|++|.+.|+|++|...-.... ...+
T Consensus 533 kW~t~~c~l--G-------F---------~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~r----A~~h 590 (626)
T KOG2106|consen 533 KWATYTCTL--G-------F---------EVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPR----APSH 590 (626)
T ss_pred eeeeeEEEE--E-------E---------EEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCc----ccce
Confidence 332211100 0 0 0011356778888899999999999999999999998765543 3334
Q ss_pred cCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeC
Q 001163 1064 LPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEP 1101 (1134)
Q Consensus 1064 ~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~ 1101 (1134)
...+|++.|..+ +|.-. ...|++.+.|.+|..|++
T Consensus 591 e~~ghs~~vt~V--~Fl~~-d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 591 EYGGHSSHVTNV--AFLCK-DSHLISTGKDTSIMQWRL 625 (626)
T ss_pred eeccccceeEEE--EEeeC-CceEEecCCCceEEEEEe
Confidence 556899999988 56564 456666669999999986
No 31
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.8e-35 Score=277.88 Aligned_cols=287 Identities=17% Similarity=0.274 Sum_probs=244.1
Q ss_pred CCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEE
Q 001163 367 VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYT 446 (1134)
Q Consensus 367 ~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd 446 (1134)
+..-|||+++.|.+|++|...+|.+..+ +....+.|+.+...||+++||+++... |++||
T Consensus 8 d~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD 67 (311)
T KOG0315|consen 8 DDPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYD 67 (311)
T ss_pred CCceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCCe-eEEEE
Confidence 3445889999999999999999998764 344667999999999999999998765 99999
Q ss_pred ccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEE
Q 001163 447 YHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFS 526 (1134)
Q Consensus 447 ~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 526 (1134)
++++..- +..++.+|...|+++.|..+|+ +++|||.||+++|||++...+.+.++ |.++|+++..+|.. .-|++
T Consensus 68 ~~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis 141 (311)
T KOG0315|consen 68 LNSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELIS 141 (311)
T ss_pred ccCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEe
Confidence 9998753 5568999999999999999999 89999999999999999977777666 77999999997765 67999
Q ss_pred ecCCCcEEEEecCCCCceeeecCC-CCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC------eeEEEecCCCCC
Q 001163 527 TATDGKIKAWLYDNLGSRVDYDAP-GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG------AVKRTYHGLGKR 599 (1134)
Q Consensus 527 ~s~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~------~~~~~~~~~~~~ 599 (1134)
|..+|.|++||+....+...+... ...|.++...|||.+++.+.. .+..++|++... +++.+++.|..
T Consensus 142 ~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~- 216 (311)
T KOG0315|consen 142 GDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHNG- 216 (311)
T ss_pred ecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheecccc-
Confidence 999999999999987666555443 348999999999999998854 456999998764 45667777776
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeE
Q 001163 600 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV-NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLL 678 (1134)
Q Consensus 600 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~ 678 (1134)
.+..+.+|||+++|++++.|.+++||+.++. +....+. ++...+..++||.||++|++++.|+.+++|++..+ +.+
T Consensus 217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~--gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v 293 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT--GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEV 293 (311)
T ss_pred eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee--cCCceEEeeeeccCccEEEecCCCCceeecccccC-cee
Confidence 7888899999999999999999999999988 3334444 55778999999999999999999999999999998 677
Q ss_pred EEeccCccc
Q 001163 679 RTVESRTFD 687 (1134)
Q Consensus 679 ~~~~~~~~~ 687 (1134)
+...+|...
T Consensus 294 ~qy~gh~K~ 302 (311)
T KOG0315|consen 294 RQYQGHHKA 302 (311)
T ss_pred eecCCcccc
Confidence 777776543
No 32
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.1e-35 Score=298.87 Aligned_cols=316 Identities=19% Similarity=0.234 Sum_probs=271.6
Q ss_pred CCCccccccccceeeeEeCCCCC-CcccccCCCCCc----------------------eeEEEeecCCCeeEEEEcCCCC
Q 001163 313 GISDEVNNLSVNILPVAYTPQSL-GQSSYSTDDLPK----------------------TVVMTLNQGSAVKSMDFHPVQQ 369 (1134)
Q Consensus 313 ~h~~~vw~~~~~i~~~~~s~~~~-~l~~~~~d~~~~----------------------~~~~~~~h~~~V~~v~fsp~g~ 369 (1134)
.|+.||. +.+|.|... .+++++.+..-+ ...+....+..|++++|+.+|.
T Consensus 176 ~~~~~V~-------~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~ 248 (524)
T KOG0273|consen 176 RHESEVF-------ICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT 248 (524)
T ss_pred cCCCceE-------EEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC
Confidence 5776655 889999877 466655443200 1112223557999999999999
Q ss_pred eEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccC
Q 001163 370 ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHG 449 (1134)
Q Consensus 370 ~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~ 449 (1134)
+||+|+.||.++||+...+... .+..|.++|.++.|+.+|+||++++.|+++.+||..+
T Consensus 249 -~LatG~~~G~~riw~~~G~l~~--------------------tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~ 307 (524)
T KOG0273|consen 249 -LLATGSEDGEARIWNKDGNLIS--------------------TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT 307 (524)
T ss_pred -eEEEeecCcEEEEEecCchhhh--------------------hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC
Confidence 7899999999999998755432 2678999999999999999999999999999999999
Q ss_pred CceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecC
Q 001163 450 GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT 529 (1134)
Q Consensus 450 ~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 529 (1134)
|.... .+.-|..+-..|.|-.+.. +++++.|+.|+|+.+...+++.++.+|.++|.++.|++.. .+|+++|.
T Consensus 308 g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg--~LLaS~Sd 379 (524)
T KOG0273|consen 308 GTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG--SLLASCSD 379 (524)
T ss_pred ceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC--ceEEEecC
Confidence 88654 4666888878899987775 8999999999999999999999999999999999996554 89999999
Q ss_pred CCcEEEEecCCCCceeeecCCCCCeeEEEECcCCC---------EEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCc
Q 001163 530 DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGA---------RLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS 600 (1134)
Q Consensus 530 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~---------~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 600 (1134)
|+++++|++........+..|...|..+.|+|+|. .+++++. +.+|++||+..+.++.+|..|.. +
T Consensus 380 D~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~~gv~i~~f~kH~~-p 454 (524)
T KOG0273|consen 380 DGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVESGVPIHTLMKHQE-P 454 (524)
T ss_pred CCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEccCCceeEeeccCCC-c
Confidence 99999999998888888999999999999999763 5777765 44799999999999999999988 9
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEcc
Q 001163 601 VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (1134)
Q Consensus 601 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 672 (1134)
|.+++|+|++.++++|+.||.|.+|+..+++.++.... ...|..++|+.+|.+|..+-.|+.+.+.|+.
T Consensus 455 VysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~---~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 455 VYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG---TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC---CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999999999999999999999999999999865 3458999999999999999999999998863
No 33
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-35 Score=293.20 Aligned_cols=290 Identities=19% Similarity=0.322 Sum_probs=262.1
Q ss_pred eeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163 348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1134)
Q Consensus 348 ~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (1134)
......+|...|+.+-|+|+-. ++++++.|++|++||..+|+.... +.||++.|..++|+
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~~~ 159 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDISFD 159 (406)
T ss_pred chhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEEEe
Confidence 3334455999999999999987 789999999999999999988653 78999999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCC
Q 001163 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 507 (1134)
Q Consensus 428 pd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~ 507 (1134)
..|++||+++.|-.+++||..+. ..+...+.+|+..|.+++|-|.|. +++|++.|.+|+.|++.+|.++++|.+|.
T Consensus 160 a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h~ 235 (406)
T KOG0295|consen 160 ASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGHS 235 (406)
T ss_pred cCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCch
Confidence 99999999999999999999873 233346889999999999999998 89999999999999999999999999999
Q ss_pred cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCC---------------CEEEEEecC
Q 001163 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG---------------ARLFSCGTN 572 (1134)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~---------------~~l~~~~~~ 572 (1134)
..|..+.. ..||.++++++.|.+|++|-+.+..+...+..|.++|.+++|.|.. .++.+++.
T Consensus 236 ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr- 312 (406)
T KOG0295|consen 236 EWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR- 312 (406)
T ss_pred HhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc-
Confidence 99998876 5777999999999999999999999999999999999999997632 35666655
Q ss_pred CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC
Q 001163 573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (1134)
Q Consensus 573 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 652 (1134)
+.+|++||+.++.++.++.+|.+ .|..++|+|.|+||+++.+|+++++||+.++++...+..|. .-++++.|+.
T Consensus 313 ---DktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~--hfvt~lDfh~ 386 (406)
T KOG0295|consen 313 ---DKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHE--HFVTSLDFHK 386 (406)
T ss_pred ---cceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCc--ceeEEEecCC
Confidence 45699999999999999999998 99999999999999999999999999999999999999774 4789999999
Q ss_pred CCcEEEEEECCCcEEEEE
Q 001163 653 EGILLAVSTNDNGIKILA 670 (1134)
Q Consensus 653 ~~~~l~~~~~dg~i~iw~ 670 (1134)
+..++++|+-|.++++|.
T Consensus 387 ~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 387 TAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CCceEEeccccceeeeee
Confidence 999999999999999996
No 34
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=6.6e-33 Score=285.65 Aligned_cols=481 Identities=17% Similarity=0.257 Sum_probs=356.5
Q ss_pred CCCCccccccccceeeeEeCCCCCCccccc---------------CCCCCceeEEEee-cCCCeeEEEEcCC--CCeEEE
Q 001163 312 FGISDEVNNLSVNILPVAYTPQSLGQSSYS---------------TDDLPKTVVMTLN-QGSAVKSMDFHPV--QQILLV 373 (1134)
Q Consensus 312 ~~h~~~vw~~~~~i~~~~~s~~~~~l~~~~---------------~d~~~~~~~~~~~-h~~~V~~v~fsp~--g~~lla 373 (1134)
.||++.|- |++.+|+.-.++++. +|...-..++.++ ....|+|++||+. |.+|++
T Consensus 101 ~GH~ddik-------c~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~ 173 (626)
T KOG2106|consen 101 LGHNDDIK-------CMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCA 173 (626)
T ss_pred cCCCCceE-------EEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEE
Confidence 39998655 899999776666542 3333445566666 6789999999983 555544
Q ss_pred EE-eCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCce
Q 001163 374 VG-TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDE 452 (1134)
Q Consensus 374 ~g-s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~ 452 (1134)
.- +.+..+.+||++.+..... ...-+..|....|+|.+..|......+.+.+|+.+++..
T Consensus 174 vD~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l 234 (626)
T KOG2106|consen 174 VDDSNPHMLSVWDWQKKAKLGP-------------------VKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSL 234 (626)
T ss_pred ecCCCccccchhhchhhhccCc-------------------ceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCce
Confidence 42 4556789999988876543 233566889999999666666666678899999999988
Q ss_pred eeeeeeeecCC-CCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCC
Q 001163 453 LRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDG 531 (1134)
Q Consensus 453 ~~~~~~l~~h~-~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg 531 (1134)
.++...++.++ ..|.|++|.++|. ++||..+|.|.||+..+.+..+....|.+.|.+++... +| .|++|+.|+
T Consensus 235 ~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr--~G-tllSGgKDR 308 (626)
T KOG2106|consen 235 VKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLR--DG-TLLSGGKDR 308 (626)
T ss_pred EEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEec--Cc-cEeecCccc
Confidence 77766666654 4699999999998 89999999999999988888777779999999999754 43 567799999
Q ss_pred cEEEEecCCCCceee--ecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCC
Q 001163 532 KIKAWLYDNLGSRVD--YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT 609 (1134)
Q Consensus 532 ~i~vwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~ 609 (1134)
.|..|| ..-+.+.. +....+.++.++-...+ ++.+.. .+.|..=.++.+- .....+|.+ ....++.+|+
T Consensus 309 ki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTt----rN~iL~Gt~~~~f-~~~v~gh~d-elwgla~hps 379 (626)
T KOG2106|consen 309 KIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTT----RNFILQGTLENGF-TLTVQGHGD-ELWGLATHPS 379 (626)
T ss_pred eEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeec----cceEEEeeecCCc-eEEEEeccc-ceeeEEcCCC
Confidence 999999 33333333 33334577776644333 555542 2234443444332 334455665 7888999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCccccc
Q 001163 610 KNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDAS 689 (1134)
Q Consensus 610 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 689 (1134)
.+.+++++.|+.+++|+ ..+++.+... ..++.|+.|+|.| .+|.|+..|...+.|.++. ..+..-
T Consensus 380 ~~q~~T~gqdk~v~lW~--~~k~~wt~~~---~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~~~-------- 444 (626)
T KOG2106|consen 380 KNQLLTCGQDKHVRLWN--DHKLEWTKII---EDPAECADFHPSG-VVAVGTATGRWFVLDTETQ-DLVTIH-------- 444 (626)
T ss_pred hhheeeccCcceEEEcc--CCceeEEEEe---cCceeEeeccCcc-eEEEeeccceEEEEecccc-eeEEEE--------
Confidence 99999999999999999 4455544433 3467899999999 9999999999999998764 222111
Q ss_pred ccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccc
Q 001163 690 RVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLR 769 (1134)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~ 769 (1134)
T Consensus 445 -------------------------------------------------------------------------------- 444 (626)
T KOG2106|consen 445 -------------------------------------------------------------------------------- 444 (626)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEE
Q 001163 770 LPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCF 849 (1134)
Q Consensus 770 ~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v 849 (1134)
....+++++.|+|+|.++++++.|+.|.||.++.. |......-.. +..+|+.+
T Consensus 445 ----~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~---------------------g~~y~r~~k~--~gs~ithL 497 (626)
T KOG2106|consen 445 ----TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN---------------------GRKYSRVGKC--SGSPITHL 497 (626)
T ss_pred ----ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC---------------------CcEEEEeeee--cCceeEEe
Confidence 02467899999999999999999999999988743 2222222222 45889999
Q ss_pred EEcCCCCeEEEee-CCeEEEEEccCCeEEEEec------------------CCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 001163 850 ALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFM------------------PPPPAATFLAFHPQDNNIIAIGMEDSSIQ 910 (1134)
Q Consensus 850 ~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~------------------~~~~~v~~l~~sp~~~~~la~g~~dg~i~ 910 (1134)
.||+|++++.+-+ |-.|-.|.......+...+ .+...|..++-+. +.+++|+|.+.|.|+
T Consensus 498 DwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~-~~~~lA~gdd~g~v~ 576 (626)
T KOG2106|consen 498 DWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSH-CEKLLASGDDFGKVH 576 (626)
T ss_pred eecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhh-hhhhhhccccCceEE
Confidence 9999999999998 7889999543322222111 2344567777777 889999999999999
Q ss_pred EEEcccc---eEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEEC
Q 001163 911 IYNVRVD---EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWST 956 (1134)
Q Consensus 911 iwd~~~~---~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~ 956 (1134)
+|...-. .....+.+|++.|++++|+.+..++++.+.|..|..|++
T Consensus 577 lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 577 LFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred EEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 9987643 345678899999999999999999999899999999986
No 35
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.1e-34 Score=270.77 Aligned_cols=295 Identities=14% Similarity=0.226 Sum_probs=250.8
Q ss_pred cEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe--eEEEecCCCCC
Q 001163 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA--VKRTYHGLGKR 599 (1134)
Q Consensus 522 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~ 599 (1134)
-+|++++.|.+||+|...++.+...+....+.|..+.+.|+++.|++++. ..|++||++++. ++.+|.+|.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-----qhvRlyD~~S~np~Pv~t~e~h~k- 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-----QHVRLYDLNSNNPNPVATFEGHTK- 84 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-----CeeEEEEccCCCCCceeEEeccCC-
Confidence 57999999999999999999999999988999999999999999999874 359999999875 6889999987
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEE
Q 001163 600 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLR 679 (1134)
Q Consensus 600 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~ 679 (1134)
.|.++.|..+|+++++||+||+++|||++.-...+.++ +..+|+++..+|+...|+++..+|.|++||+.+. ....
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~---~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~-~c~~ 160 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ---HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN-SCTH 160 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc---CCCCcceEEecCCcceEEeecCCCcEEEEEccCC-cccc
Confidence 89999999999999999999999999999855555553 3578999999999999999999999999998765 1111
Q ss_pred EeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeeccc
Q 001163 680 TVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEI 759 (1134)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~ 759 (1134)
.+
T Consensus 161 ~l------------------------------------------------------------------------------ 162 (311)
T KOG0315|consen 161 EL------------------------------------------------------------------------------ 162 (311)
T ss_pred cc------------------------------------------------------------------------------
Confidence 11
Q ss_pred CCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCC
Q 001163 760 TEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISD 839 (1134)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 839 (1134)
.|. ....|.++++.|||+.++++...|...+|++..... .+...-...++
T Consensus 163 ----------iPe--~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~-----------------~s~l~P~~k~~- 212 (311)
T KOG0315|consen 163 ----------IPE--DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT-----------------ASELEPVHKFQ- 212 (311)
T ss_pred ----------CCC--CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc-----------------cccceEhhhee-
Confidence 011 346789999999999999999999999999875311 11111111122
Q ss_pred CCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCC-eEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccc
Q 001163 840 TNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTF-KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD 917 (1134)
Q Consensus 840 ~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~ 917 (1134)
.|.+.+..+.+|||+++||+++ |.+++||+.++. +.-..+++|...+...+||. |++||++|+.|+.+++|++..+
T Consensus 213 -ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 213 -AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAG 290 (311)
T ss_pred -cccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccC
Confidence 3899999999999999999998 999999999988 66667889999999999999 9999999999999999999999
Q ss_pred eEEEeccCccCceEEEEEe
Q 001163 918 EVKTKLKGHQKRITGLAFS 936 (1134)
Q Consensus 918 ~~~~~l~~h~~~V~~l~~s 936 (1134)
+.++.+.+|-....|++..
T Consensus 291 k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 291 KEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ceeeecCCcccccEEEEee
Confidence 9999999998888887764
No 36
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1e-33 Score=281.13 Aligned_cols=339 Identities=17% Similarity=0.245 Sum_probs=286.4
Q ss_pred eeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEe
Q 001163 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWL 537 (1134)
Q Consensus 458 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd 537 (1134)
.|..|+++|.+++.+|+.+ +++||+.|....+|++.+|.....+.+|...|+++.|+. +|.+|++|+.+|.|++|.
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh--dgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH--DGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc--CceEEEecCCCccEEEEE
Confidence 5888999999999999777 899999999999999999999999999999999999854 559999999999999999
Q ss_pred cCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe
Q 001163 538 YDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG 617 (1134)
Q Consensus 538 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 617 (1134)
..++.....+......+.=+.|+|.+..|+.|+.|+ .+.+|.+.++...+.+.+|.. ++++-.|.|+|+.++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DG----svWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDG----SVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecCCC----cEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 999998888877777889999999999999997655 499999999989999999887 899999999999999999
Q ss_pred CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhh
Q 001163 618 DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIV 697 (1134)
Q Consensus 618 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1134)
.||+|++||..+++++..+.... .....++.++..+..++.|+.++.+.+-+..+++ .+....+
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e-~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK-Vv~~~n~-------------- 273 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAE-GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGK-VVNCNNG-------------- 273 (399)
T ss_pred cCceEEEEecCCCceeEEecccc-cCcCCccccccccceeEeccCCccEEEEccccce-EEEecCC--------------
Confidence 99999999999999999987544 2356789999999999999999999887766551 1111100
Q ss_pred cccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccc
Q 001163 698 KAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAM 777 (1134)
Q Consensus 698 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 777 (1134)
T Consensus 274 -------------------------------------------------------------------------------- 273 (399)
T KOG0296|consen 274 -------------------------------------------------------------------------------- 273 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCe
Q 001163 778 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY 857 (1134)
Q Consensus 778 ~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~ 857 (1134)
++..+-.... .....|..+.++..-.+
T Consensus 274 ---------~~~~l~~~~e--------------------------------------------~~~esve~~~~ss~lpL 300 (399)
T KOG0296|consen 274 ---------TVPELKPSQE--------------------------------------------ELDESVESIPSSSKLPL 300 (399)
T ss_pred ---------CCccccccch--------------------------------------------hhhhhhhhcccccccch
Confidence 0000000000 01233445555666678
Q ss_pred EEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEe
Q 001163 858 VMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS 936 (1134)
Q Consensus 858 la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s 936 (1134)
.|+|+ ||+|.|||+...+....+. |...|+.+.|-+ ..+|++++.+|.|+.||.++|+++.++.||...|.+++++
T Consensus 301 ~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls 377 (399)
T KOG0296|consen 301 AACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS 377 (399)
T ss_pred hhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEc
Confidence 88998 9999999998877666665 888899999986 4689999999999999999999999999999999999999
Q ss_pred eCCCEEEEEeCCCcEEEEECC
Q 001163 937 NTLNVLVSSGADSQLCVWSTD 957 (1134)
Q Consensus 937 ~d~~~l~s~s~Dg~i~iwd~~ 957 (1134)
|+.++++|+|.|++.+||++.
T Consensus 378 ~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 378 PQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999864
No 37
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.6e-33 Score=279.76 Aligned_cols=329 Identities=16% Similarity=0.209 Sum_probs=277.6
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 493 (1134)
|..|+++|.+++.+|+.+++|+|+.|....+|++.+|.... .+.+|+..|+++.|+.||. +|+||+.+|.|+||+
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFK 134 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEEE
Confidence 67899999999999999999999999999999999998555 6889999999999999999 899999999999999
Q ss_pred CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCC
Q 001163 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (1134)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 573 (1134)
..++.....+...-+.+.-+.|+|.. .+|+.|+.||.+-+|.+.+......+.+|..++++=.|.|+|++++++..+
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d- 211 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD- 211 (399)
T ss_pred cccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecC-
Confidence 99999999887677778889998855 899999999999999999887888888999999999999999999999764
Q ss_pred CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC------CCCCCcce
Q 001163 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD------GGLQASPC 647 (1134)
Q Consensus 574 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~ 647 (1134)
+.|++||+.++.++.++.+.......++.++..+..++.|+.++.+++-+..+|+.+...... ++...+.|
T Consensus 212 ---gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 212 ---GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred ---ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 469999999999999998777667888999999999999999999999999999888776521 11122233
Q ss_pred EEE---cCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccc
Q 001163 648 IRF---NKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAA 724 (1134)
Q Consensus 648 v~~---sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 724 (1134)
+.+ +..-.+.|+|+-||+|.|||+....
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~------------------------------------------------- 319 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAAST------------------------------------------------- 319 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccch-------------------------------------------------
Confidence 333 3344556666666666666654320
Q ss_pred cccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeee
Q 001163 725 AMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK 804 (1134)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~ 804 (1134)
T Consensus 320 -------------------------------------------------------------------------------- 319 (399)
T KOG0296|consen 320 -------------------------------------------------------------------------------- 319 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCC
Q 001163 805 WPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPP 883 (1134)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~ 883 (1134)
+.. .- .|...|..+.|-+ ..+|++++ +|.|+.||.++|+++.++.+|
T Consensus 320 ---------------------------~R~--~c--~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH 367 (399)
T KOG0296|consen 320 ---------------------------LRH--IC--EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGH 367 (399)
T ss_pred ---------------------------hhe--ec--cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecC
Confidence 000 00 1677788888888 56677776 999999999999999999999
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcc
Q 001163 884 PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVR 915 (1134)
Q Consensus 884 ~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~ 915 (1134)
...|.+++++| +.+++++++.|++.+||++.
T Consensus 368 ~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 368 QMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred chheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 99999999999 89999999999999999864
No 38
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.6e-34 Score=284.92 Aligned_cols=293 Identities=17% Similarity=0.266 Sum_probs=261.9
Q ss_pred ceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEE
Q 001163 347 KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425 (1134)
Q Consensus 347 ~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 425 (1134)
-++.+.+. |.+.|.|+++.|-.+ .+++|+.|++|.|||+.+|++..+ +.||-..|..++
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~va 200 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRGVA 200 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhheeeeee
Confidence 34455665 999999999999977 569999999999999999987764 789999999999
Q ss_pred EcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecC
Q 001163 426 WSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 505 (1134)
Q Consensus 426 ~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 505 (1134)
+|+-..||++++.|+.|+.||++..+.++ .+.||-..|.|++..|.-. .|+||+.|.+++|||+++...+..+.|
T Consensus 201 vS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 201 VSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred ecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEecC
Confidence 99999999999999999999999998777 6789999999999999888 899999999999999999999999999
Q ss_pred CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC
Q 001163 506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 585 (1134)
Q Consensus 506 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 585 (1134)
|..+|..+.+.+.. ..+++||.|++|++||+..++....+..|...+.+++.+|....+++++.|. |..|++.
T Consensus 276 H~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-----ik~w~~p 348 (460)
T KOG0285|consen 276 HTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-----IKQWKLP 348 (460)
T ss_pred CCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-----ceeccCC
Confidence 99999999886554 5799999999999999999999999999999999999999999999988654 9999999
Q ss_pred CCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEec---C---CCCCCcceEEEcCCCcEEEE
Q 001163 586 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA---D---GGLQASPCIRFNKEGILLAV 659 (1134)
Q Consensus 586 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~---~~~~~v~~v~~sp~~~~l~~ 659 (1134)
.|..+..+.+|.. .+.+++.+.|+ ++++|+++|.+.+||.++|-..+.... . .....|.+.+|...|..|++
T Consensus 349 ~g~f~~nlsgh~~-iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit 426 (460)
T KOG0285|consen 349 EGEFLQNLSGHNA-IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLIT 426 (460)
T ss_pred ccchhhccccccc-eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEe
Confidence 9999999998887 88999988775 889999999999999999876655421 1 12345789999999999999
Q ss_pred EECCCcEEEEEccC
Q 001163 660 STNDNGIKILANAD 673 (1134)
Q Consensus 660 ~~~dg~i~iw~~~~ 673 (1134)
|..|.+|++|.-..
T Consensus 427 ~eadKtIk~~keDe 440 (460)
T KOG0285|consen 427 GEADKTIKMYKEDE 440 (460)
T ss_pred ccCCcceEEEeccc
Confidence 99999999997543
No 39
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.3e-33 Score=266.52 Aligned_cols=285 Identities=21% Similarity=0.338 Sum_probs=231.3
Q ss_pred cCCCeeEEEEcCC-CCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001163 355 QGSAVKSMDFHPV-QQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (1134)
Q Consensus 355 h~~~V~~v~fsp~-g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 433 (1134)
|.+.|..++|+|- |. +||+|+.|+.|+||+...+....-++ .+-.+|+..|.+++|+|.|++|
T Consensus 13 h~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck~---------------vld~~hkrsVRsvAwsp~g~~L 76 (312)
T KOG0645|consen 13 HKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTCKT---------------VLDDGHKRSVRSVAWSPHGRYL 76 (312)
T ss_pred CCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEEEE---------------eccccchheeeeeeecCCCcEE
Confidence 3444448999998 76 88999999999999998543222111 1236899999999999999999
Q ss_pred EEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC---ceeEEecCCCcCE
Q 001163 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG---TKQYIFEGHESPV 510 (1134)
Q Consensus 434 as~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~~h~~~v 510 (1134)
|+||.|.++.||.-..++ ......++||...|.|++|+++|. +|+||+.|++|-||.+..+ ++...++.|...|
T Consensus 77 a~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDV 153 (312)
T KOG0645|consen 77 ASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDV 153 (312)
T ss_pred EEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccc
Confidence 999999999999877554 556668999999999999999999 8999999999999998754 5678899999999
Q ss_pred EEEeccccCCccEEEEecCCCcEEEEecCC---CCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC
Q 001163 511 YSICPHHKENIQFIFSTATDGKIKAWLYDN---LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (1134)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 587 (1134)
..+.|+|.. .+|+++|.|.+|++|+-.. -.+...+..+...|.+++|++.|..|++++.| ..+++|-..
T Consensus 154 K~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD----~tv~Iw~~~-- 225 (312)
T KOG0645|consen 154 KHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDD----GTVSIWRLY-- 225 (312)
T ss_pred cEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCC----cceEeeeec--
Confidence 999999887 6999999999999998663 23466788888899999999999999999764 459999754
Q ss_pred eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc------eeEEEecCCCCCCcceEEEcCC-CcEEEEE
Q 001163 588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN------LLASIDADGGLQASPCIRFNKE-GILLAVS 660 (1134)
Q Consensus 588 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~sp~-~~~l~~~ 660 (1134)
..+...+...+..+.|. ...|++++.|+.|+++.-...- .+... .+.|...|+++.|+|. ..+|+++
T Consensus 226 ---~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p~~~~~L~s~ 299 (312)
T KOG0645|consen 226 ---TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNPKVSNRLASG 299 (312)
T ss_pred ---cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcCCCCCceeec
Confidence 23444444478889998 5689999999999999765431 11111 2244668999999994 6899999
Q ss_pred ECCCcEEEEEcc
Q 001163 661 TNDNGIKILANA 672 (1134)
Q Consensus 661 ~~dg~i~iw~~~ 672 (1134)
++||.+++|.+.
T Consensus 300 ~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 300 GDDGIVNFWELE 311 (312)
T ss_pred CCCceEEEEEec
Confidence 999999999864
No 40
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.3e-34 Score=291.02 Aligned_cols=284 Identities=20% Similarity=0.330 Sum_probs=250.1
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
-...|..|.|.|+|++| .+|+..|.+.+|+..+ ++|+ .++..|..+|.++.||++|.+++
T Consensus 95 vkc~V~~v~WtPeGRRL-ltgs~SGEFtLWNg~~------fnFE-------------tilQaHDs~Vr~m~ws~~g~wmi 154 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRL-LTGSQSGEFTLWNGTS------FNFE-------------TILQAHDSPVRTMKWSHNGTWMI 154 (464)
T ss_pred cccceeeEEEcCCCcee-EeecccccEEEecCce------eeHH-------------HHhhhhcccceeEEEccCCCEEE
Confidence 45689999999999976 6999999999999732 1111 13678999999999999999999
Q ss_pred EEeCCCEEEEEEccCCceeeeeeeeecCC-CCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEE
Q 001163 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 513 (1134)
+|+.+|.|++|+..-.. ++ .+.+|. ..|++++|+|++. .++|||.||+|+|||....+.-..++||.-.|.++
T Consensus 155 SgD~gG~iKyWqpnmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred EcCCCceEEecccchhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 99999999999987543 22 345554 8999999999888 79999999999999999998888899999999999
Q ss_pred eccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEe
Q 001163 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY 593 (1134)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 593 (1134)
.|+|.. .+|++++.|..|++||.+++.++..+..|...|..+.|++++++|++++.|. .++++|+++.+.++++
T Consensus 229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~----~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ----SCKVFDIRTMKELFTY 302 (464)
T ss_pred ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc----eEEEEehhHhHHHHHh
Confidence 999877 6899999999999999999999999999999999999999999999998644 6999999999999999
Q ss_pred cCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEcc
Q 001163 594 HGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (1134)
Q Consensus 594 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 672 (1134)
.+|.+ .+.++.|+|-. ..|.+|+.||.|..|.+...+++..+.. .|...|.+++|+|=|..|++|+.|.++++|.-.
T Consensus 303 r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 303 RGHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred hcchh-hheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99998 89999999976 5667788999999999987777766643 567789999999999999999999999999743
No 41
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1e-29 Score=272.54 Aligned_cols=546 Identities=14% Similarity=0.146 Sum_probs=386.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCC-CCEEEEEEecCCCceEEEEEeCCCeEEEEECC
Q 001163 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 495 (1134)
Q Consensus 417 h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~ 495 (1134)
-..+|.++|||.+.+.||.+-.||.|.||++..+-... ..+.++. ..|.+++|++.++ |+|.+.+|.|.-||+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceee--EEEecCCCCceeeEEEccCCe---EEeecCCceEEEEecc
Confidence 35699999999999999999999999999999865433 2455554 5799999996664 8999999999999999
Q ss_pred CCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceee--ecCCCCCeeEEEECcCCCEEEEEecCC
Q 001163 496 TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD--YDAPGHSSTMMAYSADGARLFSCGTNK 573 (1134)
Q Consensus 496 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~~~ 573 (1134)
+++.++.+....+.|++++.++.. ..++.|+.||.+..++...+..... +....+.+.++.|+|++..+++|+.|
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D- 175 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID- 175 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC-
Confidence 999999999999999999997766 7899999999777777665544433 34455789999999999999999764
Q ss_pred CCCeEEEEEeCCCCeeEEEec-----CC--CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcc
Q 001163 574 EGESYLVEWNESEGAVKRTYH-----GL--GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASP 646 (1134)
Q Consensus 574 ~~~~~i~~wd~~~~~~~~~~~-----~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 646 (1134)
+.|++||..++..+.... .. ...-|.++.|-.+ ..+++|...|+|.+||...+.+++....+ ...|.
T Consensus 176 ---g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h--~adVl 249 (691)
T KOG2048|consen 176 ---GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCH--DADVL 249 (691)
T ss_pred ---ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhh--hccee
Confidence 469999999997766221 11 2224677777755 58999999999999999999999998876 66899
Q ss_pred eEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccc
Q 001163 647 CIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAM 726 (1134)
Q Consensus 647 ~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 726 (1134)
+++.++++.++++++.|+.|.-|...+....
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~------------------------------------------------- 280 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSE------------------------------------------------- 280 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccc-------------------------------------------------
Confidence 9999999999999999999988876554210
Q ss_pred cCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecC
Q 001163 727 VGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWP 806 (1134)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~ 806 (1134)
|-.. .....|...|.++++.++ .+++|+.|..+.+-...
T Consensus 281 ---------------------------wv~~------------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 281 ---------------------------WVIN------------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSR 319 (691)
T ss_pred ---------------------------eeee------------ccccCCcccceeeeeecc--eEEecceeeEEEEcccc
Confidence 1111 111237888999999988 79999999988874322
Q ss_pred CCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCe---------EE
Q 001163 807 RNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFK---------TM 877 (1134)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~---------~~ 877 (1134)
.. ...+- . +.... ... ..+...+..++++.-....+.+|.+.+.. +.
T Consensus 320 ~~--------------~~~~h---~-~~~~~----p~~--~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Ll 375 (691)
T KOG2048|consen 320 EF--------------KNMDH---R-QKNLF----PAS--DRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLL 375 (691)
T ss_pred cc--------------Cchhh---h-ccccc----ccc--ceeecCccceEEEEeccccccceeccCcccccccChhhhe
Confidence 10 00000 0 00000 011 12334455556666668888999886652 12
Q ss_pred EEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEE-----EeccCccCceEEEEEeeCCCEEEEEe-CCCcE
Q 001163 878 TTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK-----TKLKGHQKRITGLAFSNTLNVLVSSG-ADSQL 951 (1134)
Q Consensus 878 ~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~-----~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i 951 (1134)
+........|.|.+.|| +|+++|.+.- ..++||.+.....+ .......-....+.|+-|+..++.++ .+..+
T Consensus 376 kl~~k~~~nIs~~aiSP-dg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~l 453 (691)
T KOG2048|consen 376 KLFTKEKENISCAAISP-DGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSL 453 (691)
T ss_pred eeecCCccceeeeccCC-CCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEeccccee
Confidence 22233556799999999 9999998864 45788887652222 11222334567889999999888888 67778
Q ss_pred EEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEcc
Q 001163 952 CVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSC 1030 (1134)
Q Consensus 952 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~ 1030 (1134)
.++++.+........++.. .....|..+..|+||+|+|+ +..|.|.+|++++++...... .-...|+.++|+|
T Consensus 454 e~~el~~ps~kel~~~~~~----~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~--rln~~vTa~~~~~ 527 (691)
T KOG2048|consen 454 EEFELETPSFKELKSIQSQ----AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV--RLNIDVTAAAFSP 527 (691)
T ss_pred EEEEecCcchhhhhccccc----cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh--ccCcceeeeeccc
Confidence 8888776543322221111 12257999999999999999 689999999999887644442 2247899999995
Q ss_pred -CCCEEEEEecCCcEEEeecCCCcceeecCCC--cccCCC---CCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCC
Q 001163 1031 -DSQSIYVAFEEGSVGVLTASTLRLRCRINPT--AYLPTN---PSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus 1031 -dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~--~~~~~~---h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~ 1102 (1134)
+-..|+.+..|+.|.-||++..+ +.++... ..+|.. --..+.. +.|+|.+...+++ -+.+-+++.|.+
T Consensus 528 ~~~~~lvvats~nQv~efdi~~~~-l~~ws~~nt~nlpk~~~~l~~~~~g--isfd~~n~s~~~~-~~a~w~~~id~~ 601 (691)
T KOG2048|consen 528 FVRNRLVVATSNNQVFEFDIEARN-LTRWSKNNTRNLPKEPKTLIPGIPG--ISFDPKNSSRFIV-YDAHWSCLIDFS 601 (691)
T ss_pred cccCcEEEEecCCeEEEEecchhh-hhhhhhccccccccChhhcCCCCce--EEeCCCCccEEEE-EcCcEEEEEecC
Confidence 56678999999999999995443 2222211 111211 1122333 4777765555543 344556666665
No 42
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.1e-33 Score=269.14 Aligned_cols=287 Identities=16% Similarity=0.238 Sum_probs=249.5
Q ss_pred EEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCC
Q 001163 351 MTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG 430 (1134)
Q Consensus 351 ~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~ 430 (1134)
...+|.+.|+.+.|+|+|. ++|+|+.|..|.+|++.....-. ..+++|+++|..+.|.+|+
T Consensus 42 ~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d~ 102 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRDG 102 (338)
T ss_pred hcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccCC
Confidence 3445999999999999999 67999999999999976543211 1367999999999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCE
Q 001163 431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV 510 (1134)
Q Consensus 431 ~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v 510 (1134)
+.|++++.|.+|+.||+++|+..+ .+.+|..-|+++.-+.-|.+ ++.|++.|+++++||+++..+++++. ...++
T Consensus 103 s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyql 177 (338)
T KOG0265|consen 103 SHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQL 177 (338)
T ss_pred CEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cceeE
Confidence 999999999999999999999877 67889999999996666766 78899999999999999999988886 56778
Q ss_pred EEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC----
Q 001163 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE---- 586 (1134)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---- 586 (1134)
++++|.... ..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++++.+.+ ..+++||++-
T Consensus 178 tAv~f~d~s--~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd----~tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 178 TAVGFKDTS--DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMD----NTVRVWDVRPFAPS 251 (338)
T ss_pred EEEEecccc--cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccccc----ceEEEEEecccCCC
Confidence 999885444 679999999999999999999999999999999999999999999998874 4699999874
Q ss_pred CeeEEEecCCCCC---ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECC
Q 001163 587 GAVKRTYHGLGKR---SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 663 (1134)
Q Consensus 587 ~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d 663 (1134)
.+++..+.++.-. ....++|+|++..+-+|+.|..+++||......+..+++| ...|++++|+|....|.+++.|
T Consensus 252 ~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh--~gsvn~~~Fhp~e~iils~~sd 329 (338)
T KOG0265|consen 252 QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH--YGSVNEVDFHPTEPIILSCSSD 329 (338)
T ss_pred CceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc--ceeEEEeeecCCCcEEEEeccC
Confidence 3557777776321 2446789999999999999999999999998999988865 7799999999999999999999
Q ss_pred CcEEEE
Q 001163 664 NGIKIL 669 (1134)
Q Consensus 664 g~i~iw 669 (1134)
.+|++=
T Consensus 330 k~i~lg 335 (338)
T KOG0265|consen 330 KTIYLG 335 (338)
T ss_pred ceeEee
Confidence 999874
No 43
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.4e-32 Score=266.03 Aligned_cols=251 Identities=18% Similarity=0.318 Sum_probs=217.8
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 492 (1134)
.+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++.... .....+++|++.|..+.|.+|+. .++++|.|++|+.|
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW 117 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence 478999999999999999999999999999999976543 23446889999999999999999 89999999999999
Q ss_pred ECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecC
Q 001163 493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572 (1134)
Q Consensus 493 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 572 (1134)
|+++|++++.+++|..-|+++.... .+-.++.+++.|+++++||++..+....+.. ..+++++.|...+..+.+++-|
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~r-rg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggId 195 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSR-RGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGID 195 (338)
T ss_pred ecccceeeehhccccceeeecCccc-cCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeecccc
Confidence 9999999999999999999987432 2336788999999999999997776665542 4589999999999999999886
Q ss_pred CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----ceeEEEecCCCCC--Ccc
Q 001163 573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV----NLLASIDADGGLQ--ASP 646 (1134)
Q Consensus 573 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~--~v~ 646 (1134)
++ |++||++.+....++.||.+ .|+.+..+++|.++.+-+.|.++++||++.. +++..+.++.+.- ...
T Consensus 196 n~----ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 196 ND----IKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred Cc----eeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence 54 99999999999999999998 9999999999999999999999999998743 3466666554433 345
Q ss_pred eEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 647 CIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 647 ~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
.++|+|++..+..|+.|+.+++||....
T Consensus 271 ~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 271 KCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred eeeccCCCCccccccccceEEEeecccc
Confidence 7899999999999999999999997654
No 44
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.3e-33 Score=309.03 Aligned_cols=276 Identities=16% Similarity=0.219 Sum_probs=235.9
Q ss_pred ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163 775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 854 (1134)
Q Consensus 775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d 854 (1134)
....++|..|++|++.++.|-.|..|++|.+...+..+ ++ +...+
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~------------------------lk---~~~~l-------- 421 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKK------------------------LK---DASDL-------- 421 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhcc------------------------cc---chhhh--------
Confidence 45678999999999999999999999999876321100 00 00110
Q ss_pred CCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEE
Q 001163 855 DSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGL 933 (1134)
Q Consensus 855 g~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l 933 (1134)
..+=+.+ |-.+.+.|-.+....+++.+|.++|..+.|+| +.++|++++.|+++|+|.+.+..++..++||..+|+++
T Consensus 422 -~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV 499 (707)
T KOG0263|consen 422 -SNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDV 499 (707)
T ss_pred -ccccccccchhhhhccccCCceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeE
Confidence 1111122 32355666667777778999999999999999 89999999999999999999999999999999999999
Q ss_pred EEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcccce
Q 001163 934 AFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLK 1012 (1134)
Q Consensus 934 ~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~ 1012 (1134)
.|+|-|-++||+|.|++.++|...... .+.+..||. +.|.|+.|+|++.|+++ +.|.+|++||+.+|..++
T Consensus 500 ~F~P~GyYFatas~D~tArLWs~d~~~-----PlRifaghl---sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR 571 (707)
T KOG0263|consen 500 QFAPRGYYFATASHDQTARLWSTDHNK-----PLRIFAGHL---SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR 571 (707)
T ss_pred EecCCceEEEecCCCceeeeeecccCC-----chhhhcccc---cccceEEECCcccccccCCCCceEEEEEcCCCcEEE
Confidence 999999999999999999999988744 667777887 47999999999999999 589999999999999999
Q ss_pred eeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEec
Q 001163 1013 QFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLT 1092 (1134)
Q Consensus 1013 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~ 1092 (1134)
.|. ||.++|++++|||+|++|++|++||.|.+||+.+++++..+. +|++.|+++ +|+. ||..||+|+.
T Consensus 572 iF~--GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-------~Ht~ti~Sl--sFS~-dg~vLasgg~ 639 (707)
T KOG0263|consen 572 IFT--GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK-------GHTGTIYSL--SFSR-DGNVLASGGA 639 (707)
T ss_pred Eec--CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh-------cccCceeEE--EEec-CCCEEEecCC
Confidence 998 899999999999999999999999999999999999987766 788999999 6777 7999999999
Q ss_pred CCcEEEEeCCCCCCC
Q 001163 1093 DGGVYIIEPLEAEGR 1107 (1134)
Q Consensus 1093 Dg~v~vW~~~~~~~~ 1107 (1134)
|.+|++||+....+.
T Consensus 640 DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 640 DNSVRLWDLTKVIEL 654 (707)
T ss_pred CCeEEEEEchhhccc
Confidence 999999999876654
No 45
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.6e-32 Score=311.33 Aligned_cols=286 Identities=20% Similarity=0.347 Sum_probs=250.4
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCcc--ceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRE--RIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 432 (1134)
+...|+++.|||+|++ +++++.|+.+++|+..+++ .+. .+.+|...|.+++|+||+++
T Consensus 158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence 4789999999999996 7899999999999997666 322 25789999999999999999
Q ss_pred EEEEeCCCEEEEEEc-cCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEE
Q 001163 433 FGVAYSKHIVHLYTY-HGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 511 (1134)
Q Consensus 433 las~s~dg~v~iwd~-~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~ 511 (1134)
+++++.|++|+|||+ ..+..++ ++.+|...|++++|+|+++ ++++|+.|++|+|||+++++++..+.+|...|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999999999 4445454 7889999999999999996 899999999999999999999999999999999
Q ss_pred EEeccccCCccEEEEecCCCcEEEEecCCCC--ceeeecCCCC--CeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC
Q 001163 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLG--SRVDYDAPGH--SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (1134)
Q Consensus 512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 587 (1134)
+++|. +++.+|++++.|+.|++||+.++. ....+..+.. .++.+.|+|+++++++++.++ .+++||+..+
T Consensus 293 ~~~f~--~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~----~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAFS--PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDR----TLKLWDLRSG 366 (456)
T ss_pred EEEEC--CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCC----eEEEEEccCC
Confidence 99985 555899999999999999999887 3344444433 589999999999999998654 5999999999
Q ss_pred eeEEEecCCCCC--ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEE--CC
Q 001163 588 AVKRTYHGLGKR--SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST--ND 663 (1134)
Q Consensus 588 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~--~d 663 (1134)
..+..+.+|... .+.....++.+.++++|+.|+.|++||..++..+..+..|. ...+..+.++|..+++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999999875 34445567889999999999999999999999999988765 66889999999999999998 78
Q ss_pred CcEEEEEcc
Q 001163 664 NGIKILANA 672 (1134)
Q Consensus 664 g~i~iw~~~ 672 (1134)
+.+++|...
T Consensus 446 ~~~~~w~~~ 454 (456)
T KOG0266|consen 446 GLIRLWKYD 454 (456)
T ss_pred ceEEEecCC
Confidence 999999753
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.5e-32 Score=271.16 Aligned_cols=246 Identities=18% Similarity=0.292 Sum_probs=228.0
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 492 (1134)
++.+|.+.|.|+++.|-+.++++|+.|++|+|||+.+|+... ++.||...|..+++|+... |+++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 578999999999999999999999999999999999998544 7999999999999999888 89999999999999
Q ss_pred ECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecC
Q 001163 493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572 (1134)
Q Consensus 493 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 572 (1134)
|++..+.++.+.||-..|.|+..+|.- +.|++|+.|.++++||+++......+.+|...|.++.+.|-...+++++.|
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D 298 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD 298 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence 999999999999999999999998876 689999999999999999999999999999999999999999999999875
Q ss_pred CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC
Q 001163 573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (1134)
Q Consensus 573 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 652 (1134)
. +|++||+..|+...++..|.. .+.+++.+|....+++++.| .|+-|++..|..+..+.+| ...+++++.+.
T Consensus 299 ~----tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh--~~iintl~~ns 370 (460)
T KOG0285|consen 299 S----TVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGH--NAIINTLSVNS 370 (460)
T ss_pred c----eEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhhccccc--cceeeeeeecc
Confidence 4 599999999999999998887 89999999999999998876 5999999999999987755 77889999988
Q ss_pred CCcEEEEEECCCcEEEEEccCC
Q 001163 653 EGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 653 ~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
|+ ++++|++.|.+.+||..++
T Consensus 371 D~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 371 DG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred Cc-eEEEcCCceEEEEEecCcC
Confidence 76 7778999999999999988
No 47
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-30 Score=285.82 Aligned_cols=476 Identities=14% Similarity=0.218 Sum_probs=334.0
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 493 (1134)
+...+..|..++|+|...+++++-..|.|++||.+-+.++. .+..|+++|..++|+|.+. +++||+.|..|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 44567899999999999999999999999999999988776 6889999999999999999 899999999999999
Q ss_pred CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCC
Q 001163 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (1134)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 573 (1134)
..+.+++.++.||-..|..+.|++.- .+|+++|.|.+|+||+..+.+++..+++|.+-|.|..|+|....+++++.|.
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQ 157 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQ 157 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccc
Confidence 99999999999999999999998765 7999999999999999999999999999999999999999999999998754
Q ss_pred CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCC
Q 001163 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 653 (1134)
Q Consensus 574 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 653 (1134)
+|++||+..-+....-.+.-....... + ++.=+.|+.|-.| -..+. +|...|+-++|+|.
T Consensus 158 ----TVRVWDisGLRkk~~~pg~~e~~~~~~---~-~~~dLfg~~DaVV----------K~VLE--GHDRGVNwaAfhpT 217 (1202)
T KOG0292|consen 158 ----TVRVWDISGLRKKNKAPGSLEDQMRGQ---Q-GNSDLFGQTDAVV----------KHVLE--GHDRGVNWAAFHPT 217 (1202)
T ss_pred ----eEEEEeecchhccCCCCCCchhhhhcc---c-cchhhcCCcCeee----------eeeec--ccccccceEEecCC
Confidence 699999864333222222100000000 0 0000112222211 12334 55778999999999
Q ss_pred CcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCC
Q 001163 654 GILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDS 733 (1134)
Q Consensus 654 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 733 (1134)
-.++++|++|+.|++|..+..
T Consensus 218 lpliVSG~DDRqVKlWrmnet----------------------------------------------------------- 238 (1202)
T KOG0292|consen 218 LPLIVSGADDRQVKLWRMNET----------------------------------------------------------- 238 (1202)
T ss_pred cceEEecCCcceeeEEEeccc-----------------------------------------------------------
Confidence 999999999999999987543
Q ss_pred ccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcc
Q 001163 734 RNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNST 813 (1134)
Q Consensus 734 ~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~ 813 (1134)
+.|+++. | .+|.+.|.++.|+|....+++.+.|++|+|||++.+.
T Consensus 239 ------------------KaWEvDt------c-------rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt---- 283 (1202)
T KOG0292|consen 239 ------------------KAWEVDT------C-------RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT---- 283 (1202)
T ss_pred ------------------cceeehh------h-------hcccCCcceEEecCccceeEecCCCccEEEEeccccc----
Confidence 2354432 1 3599999999999999999999999999999887431
Q ss_pred cccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEc
Q 001163 814 GKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFH 893 (1134)
Q Consensus 814 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~s 893 (1134)
.+.. +.. ....-+.++.+|..+++|+|.|+.+.+|.++.-++ +.+.+
T Consensus 284 ------------------~v~t-frr--endRFW~laahP~lNLfAAgHDsGm~VFkleRErp------------a~~v~ 330 (1202)
T KOG0292|consen 284 ------------------SVQT-FRR--ENDRFWILAAHPELNLFAAGHDSGMIVFKLERERP------------AYAVN 330 (1202)
T ss_pred ------------------ceee-eec--cCCeEEEEEecCCcceeeeecCCceEEEEEcccCc------------eEEEc
Confidence 1111 111 45677899999999999999998888887753222 22333
Q ss_pred CCCCcEEEEEeCCCcEEEEEcccceE--EEeccCc---cCceEEEEEeeCCCEEEEEe--CCCcEEEEECCCCcccccee
Q 001163 894 PQDNNIIAIGMEDSSIQIYNVRVDEV--KTKLKGH---QKRITGLAFSNTLNVLVSSG--ADSQLCVWSTDGWEKQASKF 966 (1134)
Q Consensus 894 p~~~~~la~g~~dg~i~iwd~~~~~~--~~~l~~h---~~~V~~l~~s~d~~~l~s~s--~Dg~i~iwd~~~~~~~~~~~ 966 (1134)
++.++.+- |..|+-+|+.+.+- +..++.- ..++.++.++|....+..++ ..+...++.+..........
T Consensus 331 --~n~LfYvk--d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~ 406 (1202)
T KOG0292|consen 331 --GNGLFYVK--DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDG 406 (1202)
T ss_pred --CCEEEEEc--cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCc
Confidence 34444443 88999999988543 3444433 36788999999776555443 23444455544321100000
Q ss_pred eeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEE
Q 001163 967 LTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVG 1045 (1134)
Q Consensus 967 ~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~ 1045 (1134)
.....+ .+.. ..|-..+++.+. -++.++.+=++.+........ ...+..|-+-.+|.+|+.. ...|.
T Consensus 407 ~~~~k~-----tG~~-a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~----~~~~~~IF~ag~g~lll~~--~~~v~ 474 (1202)
T KOG0292|consen 407 KDVKKG-----TGEG-ALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLL----PESTDDIFYAGTGNLLLRS--PDSVT 474 (1202)
T ss_pred hhhhcC-----CCCc-eEEEEecceEEEEecCcceEEecccchhhhcccC----cccccceeeccCccEEEEc--CCeEE
Confidence 000000 1112 223333333333 235556665555433222221 1345566666777776643 35699
Q ss_pred EeecCCCcceeecC
Q 001163 1046 VLTASTLRLRCRIN 1059 (1134)
Q Consensus 1046 vwd~~~~~~~~~~~ 1059 (1134)
+||++..+....+.
T Consensus 475 lfdvQq~~~~~si~ 488 (1202)
T KOG0292|consen 475 LFDVQQKKKVGSIK 488 (1202)
T ss_pred EEEeecceEEEEEe
Confidence 99999988877666
No 48
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.7e-31 Score=254.89 Aligned_cols=292 Identities=17% Similarity=0.213 Sum_probs=238.7
Q ss_pred cccccEEEEEEecC-CceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEc
Q 001163 774 LTAMRVSRLIYTNS-GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALS 852 (1134)
Q Consensus 774 ~~~~~i~~l~~spd-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s 852 (1134)
+|.+++..++|+|- |..|++++.|..|++|+.... .+-.+... +. .+|...|+.++|+
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~-------------------~s~~ck~v-ld-~~hkrsVRsvAws 70 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG-------------------DSWTCKTV-LD-DGHKRSVRSVAWS 70 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCC-------------------CcEEEEEe-cc-ccchheeeeeeec
Confidence 58889999999999 999999999999999976521 11111111 22 2599999999999
Q ss_pred CCCCeEEEee-CCeEEEEEcc--CCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccc---eEEEeccCc
Q 001163 853 KNDSYVMSAS-GGKISLFNMM--TFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD---EVKTKLKGH 926 (1134)
Q Consensus 853 ~dg~~la~~s-dg~i~lwd~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~---~~~~~l~~h 926 (1134)
|.|++|++++ |.++.||.-. ..+++.++.+|..+|.|++|++ +|.+||+++.|++|-||.+..+ +++..++.|
T Consensus 71 p~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H 149 (312)
T KOG0645|consen 71 PHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH 149 (312)
T ss_pred CCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc
Confidence 9999999999 9999999865 4578999999999999999999 9999999999999999999854 577889999
Q ss_pred cCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeC
Q 001163 927 QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEA 1005 (1134)
Q Consensus 927 ~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~ 1005 (1134)
...|..+.|+|...+|+|+|.|.+|++|.-.. .....+.+...+|.. .|-+++|++.|..|++ +.|++++||..
T Consensus 150 tqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~--dddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 150 TQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED--DDDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred cccccEEEEcCCcceeEEeccCCeEEEEeecC--CCCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEeeee
Confidence 99999999999999999999999999998763 224667888888873 7999999999988888 58899999986
Q ss_pred CCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCC
Q 001163 1006 PKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPN 1085 (1134)
Q Consensus 1006 ~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~ 1085 (1134)
.+ .+ ..-|+..+..+.|. ...|++++.|+.|++|.-..+-.-..+......-..|...|.++ .|+|...+
T Consensus 225 ~~-----~~-~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV--~w~p~~~~ 294 (312)
T KOG0645|consen 225 YT-----DL-SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSV--QWNPKVSN 294 (312)
T ss_pred cc-----Cc-chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceE--EEcCCCCC
Confidence 52 12 23578899999997 56799999999999999775422222221111223477778777 89996689
Q ss_pred EEEEEecCCcEEEEeCC
Q 001163 1086 QFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus 1086 ~l~s~~~Dg~v~vW~~~ 1102 (1134)
+|++|++||.|++|.+.
T Consensus 295 ~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 295 RLASGGDDGIVNFWELE 311 (312)
T ss_pred ceeecCCCceEEEEEec
Confidence 99999999999999874
No 49
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-32 Score=271.16 Aligned_cols=253 Identities=21% Similarity=0.302 Sum_probs=231.5
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 493 (1134)
+.+|..+|+.+-|+|+-..+++++.|++|++||..+|+..+ .++||...|..++|+..|+ ++++++.|-.+++||
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD 178 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence 67899999999999999999999999999999999999755 7999999999999999999 899999999999999
Q ss_pred CCC-CceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecC
Q 001163 494 AVT-GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572 (1134)
Q Consensus 494 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 572 (1134)
..+ .++++.+.+|...|.+++|.|.+ ++|++++.|.+|+.|+++++-++..+.+|...|..+..+.||..+++++.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~- 255 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN- 255 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence 887 67888899999999999998765 79999999999999999999999999999999999999999999999975
Q ss_pred CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCC---------------CCEEEEEeCCCeEEEEEcCCCceeEEEe
Q 001163 573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT---------------KNRFLAAGDEFMIKFWDMDNVNLLASID 637 (1134)
Q Consensus 573 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 637 (1134)
+.++++|-..++++...+..|+- ++.+++|.|. +.++.+++.|++|++||+.++.++.++.
T Consensus 256 ---dqtl~vW~~~t~~~k~~lR~hEh-~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ 331 (406)
T KOG0295|consen 256 ---DQTLRVWVVATKQCKAELREHEH-PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV 331 (406)
T ss_pred ---CceEEEEEeccchhhhhhhcccc-ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe
Confidence 44699999999988888888876 8889988763 2589999999999999999999999999
Q ss_pred cCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEe
Q 001163 638 ADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTV 681 (1134)
Q Consensus 638 ~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 681 (1134)
+| ...|..++|+|.|++|+++.+|+++++||+.+. ++++.+
T Consensus 332 gh--dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~ 372 (406)
T KOG0295|consen 332 GH--DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTL 372 (406)
T ss_pred cc--cceeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeecc
Confidence 76 669999999999999999999999999999887 555444
No 50
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-31 Score=250.04 Aligned_cols=288 Identities=17% Similarity=0.237 Sum_probs=246.5
Q ss_pred CceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEE
Q 001163 346 PKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 424 (1134)
Q Consensus 346 ~~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 424 (1134)
|....+.+. ++++|.++.|+-||+|. .+++.|.+|++|+...|.++++ +.+|...|..+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY~-ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~ 65 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNYC-LTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDA 65 (307)
T ss_pred cchhceeecccccceEEEEEccCCCEE-EEcCCCceEEeecccccceeee-------------------ecCCCceeeec
Confidence 344456666 89999999999999965 6788999999999999998875 68999999999
Q ss_pred EEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC--ceeEE
Q 001163 425 MWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG--TKQYI 502 (1134)
Q Consensus 425 ~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~--~~~~~ 502 (1134)
+.+.|...+++|+.|..|.+||+.+|+..+ .+.+|.+.|+.++|+.+.. .+++|+.|.++++||.++. ++++.
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccch
Confidence 999999999999999999999999999887 6899999999999999988 8999999999999998754 67888
Q ss_pred ecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEE
Q 001163 503 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW 582 (1134)
Q Consensus 503 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 582 (1134)
+......|.++.+.. ..|++|+.||++|.||++.+.....+ -+++|++++|++|++..+.++.+. .+++.
T Consensus 141 ldea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~s----tlrLl 210 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSLDS----TLRLL 210 (307)
T ss_pred hhhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeeccc----eeeec
Confidence 988889999997643 67999999999999999876654443 356899999999999999988754 59999
Q ss_pred eCCCCeeEEEecCCCCCce-EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEE
Q 001163 583 NESEGAVKRTYHGLGKRSV-GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST 661 (1134)
Q Consensus 583 d~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~ 661 (1134)
|-.+|+++..+.+|.+... ..++++.....+++|++||.|++||+.....+..+..++. ..+..++++|.-..++++.
T Consensus 211 Dk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 211 DKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFITAT 289 (307)
T ss_pred ccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCccceeEec
Confidence 9999999999999976332 3467777788999999999999999999999998876532 2478999999877777665
Q ss_pred CCCcEEEEE
Q 001163 662 NDNGIKILA 670 (1134)
Q Consensus 662 ~dg~i~iw~ 670 (1134)
.. .+..|.
T Consensus 290 ~~-~~~~~~ 297 (307)
T KOG0316|consen 290 GH-GDLFWY 297 (307)
T ss_pred CC-ceecee
Confidence 43 455554
No 51
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.8e-31 Score=304.01 Aligned_cols=288 Identities=27% Similarity=0.388 Sum_probs=246.6
Q ss_pred ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163 775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 854 (1134)
Q Consensus 775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d 854 (1134)
+...|.++.|+++|+.+++++.++.+++|+..... + .....+. +|...|..++|+||
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~----------------~-----~~~~~l~--~h~~~v~~~~fs~d 214 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIK----------------S-----NLLRELS--GHTRGVSDVAFSPD 214 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeeccccc----------------c-----hhhcccc--ccccceeeeEECCC
Confidence 46789999999999999999999999999763211 0 1111223 39999999999999
Q ss_pred CCeEEEee-CCeEEEEEc-cCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEE
Q 001163 855 DSYVMSAS-GGKISLFNM-MTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITG 932 (1134)
Q Consensus 855 g~~la~~s-dg~i~lwd~-~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~ 932 (1134)
++++++++ |++|+|||+ ..+.+++++++|...|++++|+| +++++++|+.|++|+|||+.+++++..+.+|.+.|++
T Consensus 215 ~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 215 GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG 293 (456)
T ss_pred CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence 99999999 899999999 66799999999999999999999 6799999999999999999999999999999999999
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCcccc
Q 001163 933 LAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECL 1011 (1134)
Q Consensus 933 l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~~ 1011 (1134)
++|++++.+|++++.|+.|++||+.++... +.....++.... .+.++.|+|++++++++ .|+.+++||+..+.+.
T Consensus 294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV 369 (456)
T ss_pred EEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence 999999999999999999999999997743 344455555422 68999999999999995 7779999999999999
Q ss_pred eeeccCCCcc---CEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCC-CCCceeEEEEecCCCCCEE
Q 001163 1012 KQFVPREASG---PITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNP-SLRVYPLVIAGNPTDPNQF 1087 (1134)
Q Consensus 1012 ~~~~~~~h~~---~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~p~~~~~l 1087 (1134)
..+. +|.. .+.+..++++|.++++|+.|+.|++||..++..+.++. +| ...+..+ +++| ..+++
T Consensus 370 ~~~~--~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-------~h~~~~~~~~--~~~~-~~~~~ 437 (456)
T KOG0266|consen 370 GTYT--GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-------GHSKAAVSDL--SSHP-TENLI 437 (456)
T ss_pred eeec--ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-------CCCCCceecc--ccCC-CcCee
Confidence 9988 5544 45566678899999999999999999999988887777 56 4555555 7888 68899
Q ss_pred EEEe--cCCcEEEEeCC
Q 001163 1088 ALGL--TDGGVYIIEPL 1102 (1134)
Q Consensus 1088 ~s~~--~Dg~v~vW~~~ 1102 (1134)
++++ .|+.+++|...
T Consensus 438 ~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 438 ASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eecCcCCCceEEEecCC
Confidence 9988 79999999764
No 52
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.1e-32 Score=283.83 Aligned_cols=293 Identities=18% Similarity=0.270 Sum_probs=246.7
Q ss_pred CceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCC-ccceeeeceeeeeccccCccccccccccCCCCEEE
Q 001163 346 PKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGS-RERIAVKSFKVWELGACSMPLQASLSSDYTASVNR 423 (1134)
Q Consensus 346 ~~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 423 (1134)
|+..++++. |...|+++.|.|-.-+|+++|+.|+.|+||++.. ++++++ +.||..+|.+
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~Vrd 263 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPVRD 263 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehh-------------------hhcchhhhhh
Confidence 567777776 9999999999995445889999999999999977 666654 7899999999
Q ss_pred EEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe
Q 001163 424 VMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF 503 (1134)
Q Consensus 424 l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 503 (1134)
++|+++|..++++|.|+.|++||+++|+++..+ . -...++|+.|.||+.+ .+++|+.|+.|+.||+++++.++++
T Consensus 264 ~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f---~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqeY 338 (503)
T KOG0282|consen 264 ASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF---H-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQEY 338 (503)
T ss_pred hhccccCCeeeeeecceeeeeeccccceEEEEE---e-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHHH
Confidence 999999999999999999999999999977633 1 3346899999999955 7899999999999999999999999
Q ss_pred cCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceee-ecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEE
Q 001163 504 EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW 582 (1134)
Q Consensus 504 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 582 (1134)
..|-+.|..+.|.+ +|..+++.+.|+++++|+.+..-.... .....+...++..+|++++++.-+.+ ..|.++
T Consensus 339 d~hLg~i~~i~F~~--~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d----N~i~if 412 (503)
T KOG0282|consen 339 DRHLGAILDITFVD--EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMD----NYIAIF 412 (503)
T ss_pred HhhhhheeeeEEcc--CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccC----ceEEEE
Confidence 99999999999854 458999999999999999886544332 23344577889999999999987654 358888
Q ss_pred eCCCC---eeEEEecCCCCC-ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCC-CcEE
Q 001163 583 NESEG---AVKRTYHGLGKR-SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE-GILL 657 (1134)
Q Consensus 583 d~~~~---~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~-~~~l 657 (1134)
.+... ...+.|.+|... .-..+.|||||.+|++|+.||.+.+||..+-+++..+..| ...+..+.|+|. ...+
T Consensus 413 s~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah--~~~ci~v~wHP~e~Skv 490 (503)
T KOG0282|consen 413 STVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH--DQPCIGVDWHPVEPSKV 490 (503)
T ss_pred ecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC--CcceEEEEecCCCccee
Confidence 75433 334466777542 3456899999999999999999999999999999999876 668999999994 5789
Q ss_pred EEEECCCcEEEEE
Q 001163 658 AVSTNDNGIKILA 670 (1134)
Q Consensus 658 ~~~~~dg~i~iw~ 670 (1134)
|+++.||.|++|+
T Consensus 491 at~~w~G~Ikiwd 503 (503)
T KOG0282|consen 491 ATCGWDGLIKIWD 503 (503)
T ss_pred EecccCceeEecC
Confidence 9999999999996
No 53
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=9.8e-33 Score=270.92 Aligned_cols=274 Identities=22% Similarity=0.346 Sum_probs=233.4
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
...+|+|+.+..+ .+++|..|.+|+|||..+.+.+. .+.||++.|.|+.| |.+.++
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqy--d~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQY--DERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeec--cceEEE
Confidence 4578999999654 46899999999999998877665 38999999999999 566999
Q ss_pred EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce---eEEecCCCcCEE
Q 001163 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK---QYIFEGHESPVY 511 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~---~~~~~~h~~~v~ 511 (1134)
+|+.|.+|+|||+++|++++ ++-+|...|..+.|+. . +++|+|.|.++.+||+..... .+.+.||.+.|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~n--g--~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSN--G--YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeC--C--EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999877 6888999999999983 3 799999999999999987653 356789999999
Q ss_pred EEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEE
Q 001163 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR 591 (1134)
Q Consensus 512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 591 (1134)
.+.|+ . +++++++.|.+|++|++.+.+....+.+|...|.++.+ .|+++++|+. +.+|++||+..|.+++
T Consensus 325 vVdfd--~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDFD--D--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eeccc--c--ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 99873 3 69999999999999999999999999999888888776 6788888865 4569999999999999
Q ss_pred EecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEE-------EecCCCCCCcceEEEcCCCcEEEEEECCC
Q 001163 592 TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLAS-------IDADGGLQASPCIRFNKEGILLAVSTNDN 664 (1134)
Q Consensus 592 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~~v~~v~~sp~~~~l~~~~~dg 664 (1134)
.+.||+. -|.++.|. .+.+++|+.||+|++||+..+..... .....+.+.|..+.|. ...+++++.|.
T Consensus 395 vLeGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHdd 469 (499)
T KOG0281|consen 395 VLEGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDD 469 (499)
T ss_pred HHhchHH-hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCC
Confidence 9999997 89999984 67899999999999999987653321 1122346678888884 66899999999
Q ss_pred cEEEEEccCC
Q 001163 665 GIKILANADG 674 (1134)
Q Consensus 665 ~i~iw~~~~~ 674 (1134)
+|.|||+.++
T Consensus 470 tILiWdFl~~ 479 (499)
T KOG0281|consen 470 TILIWDFLNG 479 (499)
T ss_pred eEEEEEcCCC
Confidence 9999999877
No 54
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=270.04 Aligned_cols=259 Identities=16% Similarity=0.205 Sum_probs=215.9
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 492 (1134)
++..|++.|+-+.||++|+|||+++.|.+..||++.....++..+++.+|..+|..+.||||++ +|++|+.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 4788999999999999999999999999999999987766777778999999999999999999 89999999999999
Q ss_pred ECCCCceeEEec-CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecC-CCCCeeEEEECcCCCEEEEEe
Q 001163 493 DAVTGTKQYIFE-GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-PGHSSTMMAYSADGARLFSCG 570 (1134)
Q Consensus 493 d~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~ 570 (1134)
|+.+|.+...+. +|...+.+++|.| ||..+++|+.|+++..||++... .....+ ....|.+++.++||+++++.+
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEe
Confidence 999999988775 3567899999965 45889999999999999987433 222222 234699999999999999987
Q ss_pred cCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEE
Q 001163 571 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF 650 (1134)
Q Consensus 571 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 650 (1134)
.|. .|++++.++.........++ ++++++.+.+++++++.-.+..+.+||++..+.+..+.+|.....+..-+|
T Consensus 374 ~d~----~i~l~~~e~~~dr~lise~~--~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 374 VDK----KIRLYNREARVDRGLISEEQ--PITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred ccc----ceeeechhhhhhhccccccC--ceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEecc
Confidence 543 59999988776665444443 899999999999999998999999999998888888887755545555566
Q ss_pred cC-CCcEEEEEECCCcEEEEEccCCceeEEEecc
Q 001163 651 NK-EGILLAVSTNDNGIKILANADGIRLLRTVES 683 (1134)
Q Consensus 651 sp-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 683 (1134)
.- +..++++|++|+.|+||+..++ .++..+.|
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr~sg-kll~~LsG 480 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHRISG-KLLAVLSG 480 (519)
T ss_pred CCCCcceEEecCCCceEEEEEccCC-ceeEeecC
Confidence 65 5589999999999999998887 45544443
No 55
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=100.00 E-value=4.2e-30 Score=271.01 Aligned_cols=685 Identities=14% Similarity=0.145 Sum_probs=369.1
Q ss_pred eCCCCCCcccccCCCCC--ceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccC
Q 001163 330 YTPQSLGQSSYSTDDLP--KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACS 406 (1134)
Q Consensus 330 ~s~~~~~l~~~~~d~~~--~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 406 (1134)
+-..|..+...-.+... .+.+-.+. |.+.|+.+.|||-...|||+||.|..|+||.+..|.....
T Consensus 50 ~e~~G~~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L------------ 117 (1012)
T KOG1445|consen 50 IEGEGGKLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL------------ 117 (1012)
T ss_pred ecCCCceEEEEeccccCccccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc------------
Confidence 33344444444333322 22333444 9999999999998777999999999999999985532210
Q ss_pred ccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC
Q 001163 407 MPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED 486 (1134)
Q Consensus 407 ~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d 486 (1134)
......+.+..-.|-|+.|+|...-|...+..|+++|||+.+++.+. .+.+|...|.++.|+.||+ +|++.+.|
T Consensus 118 -Sape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKd 191 (1012)
T KOG1445|consen 118 -SAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKD 191 (1012)
T ss_pred -CCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCC
Confidence 01111345566788999999976666666678899999999988665 7899999999999999999 89999999
Q ss_pred CeEEEEECCC-CceeEEecCCCcCE-EEEeccccCCccEEEEecCC----CcEEEEecCCCCce-eeecCC-CCCeeEEE
Q 001163 487 RVIKVWDAVT-GTKQYIFEGHESPV-YSICPHHKENIQFIFSTATD----GKIKAWLYDNLGSR-VDYDAP-GHSSTMMA 558 (1134)
Q Consensus 487 ~~i~iwd~~~-~~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~-~~~~~~-~~~v~~~~ 558 (1134)
+.|+|+|.+. ++.++...+|.+.- ..+.| .++-..|++.+.+ ..|++||.+..... ..++.. ...|.---
T Consensus 192 kqirifDPRa~~~piQ~te~H~~~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl 269 (1012)
T KOG1445|consen 192 KQIRIFDPRASMEPIQTTEGHGGMRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPL 269 (1012)
T ss_pred cceEEeCCccCCCccccccccccchhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeee
Confidence 9999999874 57788888887642 12333 3443456665544 56899998764432 222222 22455556
Q ss_pred ECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEE--EecCCCCCceEEEEEcCCCCEEEEEeC------------------
Q 001163 559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKR--TYHGLGKRSVGVVQFDTTKNRFLAAGD------------------ 618 (1134)
Q Consensus 559 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------ 618 (1134)
|.||.++|+.++ .|+..+..+.+...++.. .+...-.......++-|....-+..++
T Consensus 270 ~DpDt~llfLaG---KG~~~l~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~ 346 (1012)
T KOG1445|consen 270 YDPDTRLLFLAG---KGTNKLFMLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYI 346 (1012)
T ss_pred ecCCCceEEEec---CCcceEEEEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccc
Confidence 899999888876 456678888776543211 111000000011111111110000000
Q ss_pred ---------------------CC-eEEEEEcCCCceeEEEec------CCC----------------CCCcceEEEcCCC
Q 001163 619 ---------------------EF-MIKFWDMDNVNLLASIDA------DGG----------------LQASPCIRFNKEG 654 (1134)
Q Consensus 619 ---------------------dg-~i~iwd~~~~~~~~~~~~------~~~----------------~~~v~~v~~sp~~ 654 (1134)
-+ .---|=-.+.+.+..+.. |+. ...|......|..
T Consensus 347 VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~ 426 (1012)
T KOG1445|consen 347 VPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRP 426 (1012)
T ss_pred cchhhhhhhhhhhCccccCCccCcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCc
Confidence 00 000111111111111110 000 0000000000000
Q ss_pred -cEEEEEEC-------------CCcEEEEEccCCce---------eEEEeccCcccccccchhhhhcccc-ccccccccc
Q 001163 655 -ILLAVSTN-------------DNGIKILANADGIR---------LLRTVESRTFDASRVASAAIVKAPA-IGTFGSANA 710 (1134)
Q Consensus 655 -~~l~~~~~-------------dg~i~iw~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 710 (1134)
.-.-+.++ ...++-.+....+. ....-++.+..+..+....+..-+. -.++.....
T Consensus 427 ~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s 506 (1012)
T KOG1445|consen 427 MSNNNSSSNNVPDVQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVS 506 (1012)
T ss_pred cccccccccCCCccccCCCcCcchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccc
Confidence 00000000 00000000000000 0000000000000000000000000 000000000
Q ss_pred ccc---cCcCCCCcccccccCC----CCCCccCcccccccccccccccceeeecccCCcc------ceeccccCCccccc
Q 001163 711 NVG---TSLGERTAPAAAMVGM----SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPS------QCRSLRLPDNLTAM 777 (1134)
Q Consensus 711 ~~s---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~------~~~~~~~~~~~~~~ 777 (1134)
..+ |...+. .|-..-..+ +...+........-..+--|.+.-|.-....... ..+.+.... .+
T Consensus 507 ~~s~~~P~~~ks-vPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~---Pg 582 (1012)
T KOG1445|consen 507 TPSVVGPAFGKS-VPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRL---PG 582 (1012)
T ss_pred cccccCcccccc-CCCCCCcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccC---CC
Confidence 001 111100 000000000 0000000000000000000111111111111100 001110000 01
Q ss_pred cEEEEEEecCCceeee--eccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcC-C
Q 001163 778 RVSRLIYTNSGLAILA--LASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK-N 854 (1134)
Q Consensus 778 ~i~~l~~spdg~~l~~--~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~-d 854 (1134)
.+=-|+.+..++++ .+..|.|.||+++....-+++.+ ++......|+.+.|.| |
T Consensus 583 --EsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~---------------------p~l~Ngt~vtDl~WdPFD 639 (1012)
T KOG1445|consen 583 --ESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVM---------------------PGLFNGTLVTDLHWDPFD 639 (1012)
T ss_pred --ccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccc---------------------cccccCceeeecccCCCC
Confidence 11123444444443 45578999999886655444432 2222567889999998 5
Q ss_pred CCeEEEee-CCeEEEEEccCC-------eEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCc
Q 001163 855 DSYVMSAS-GGKISLFNMMTF-------KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGH 926 (1134)
Q Consensus 855 g~~la~~s-dg~i~lwd~~~~-------~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h 926 (1134)
...||++. ||.|++|.+..+ ..-..+..|...|+++.|+|--...|++++.|-+|++||+.+++....+.+|
T Consensus 640 ~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gH 719 (1012)
T KOG1445|consen 640 DERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGH 719 (1012)
T ss_pred hHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccC
Confidence 67788887 899999998643 3445677899999999999976779999999999999999999999999999
Q ss_pred cCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-E----eeceEE
Q 001163 927 QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-V----HETQIA 1001 (1134)
Q Consensus 927 ~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~----~d~~i~ 1001 (1134)
.+.|.+++|||||+.+||.+.||+|++|+..+++ ..+.++....+..-..+.|.-||+++++ | ++++|.
T Consensus 720 tdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e------~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~ 793 (1012)
T KOG1445|consen 720 TDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE------QPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQ 793 (1012)
T ss_pred cCceeEEEECCCCcceeeeecCceEEEeCCCCCC------CccccCCCCccCcceeEEEEecCcEEEEecccccchhhhh
Confidence 9999999999999999999999999999988755 2233333333344567889999999888 4 457899
Q ss_pred EEeCCCccc--ceeeccCCCccCEEEEEEccCCCE-EEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCC
Q 001163 1002 IYEAPKLEC--LKQFVPREASGPITHATYSCDSQS-IYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLR 1071 (1134)
Q Consensus 1002 iwd~~~~~~--~~~~~~~~h~~~v~~~~~s~dg~~-l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~ 1071 (1134)
+||..+... +....... ...+.--.+.+|... +++|-.|..|.+|++.-......-......|.+|.+-
T Consensus 794 ~Y~Aq~l~~~pl~t~~lDv-aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~hqGl 865 (1012)
T KOG1445|consen 794 MYDAQTLDLRPLYTQVLDV-APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGHQGL 865 (1012)
T ss_pred hhhhhhccCCcceeeeecc-cCccccccccCCCceEEEecCCCceEEEEEecCCCceeeecccccCCCcccce
Confidence 999876542 22221110 122222334556665 6788889999999987655532211222334455554
No 56
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.1e-32 Score=275.32 Aligned_cols=285 Identities=15% Similarity=0.256 Sum_probs=246.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC
Q 001163 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT 496 (1134)
Q Consensus 417 h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~ 496 (1134)
-+..|..+.|.|+|+.|++|+..|.+.+|+..+ +.-...++.|+.+|+++.|+++|. +++||+.+|.|++|+..-
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~---fnFEtilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS---FNFETILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCce---eeHHHHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccch
Confidence 345899999999999999999999999999754 222234778999999999999999 899999999999999544
Q ss_pred CceeEEecCC-CcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCC
Q 001163 497 GTKQYIFEGH-ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG 575 (1134)
Q Consensus 497 ~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 575 (1134)
..++.+.+| ...|.+++|++.. ..+++++.||+|+|||....+....+.+|+-.|.++.|+|.-..+++++.|
T Consensus 170 -nnVk~~~ahh~eaIRdlafSpnD--skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskD--- 243 (464)
T KOG0284|consen 170 -NNVKIIQAHHAEAIRDLAFSPND--SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKD--- 243 (464)
T ss_pred -hhhHHhhHhhhhhhheeccCCCC--ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCC---
Confidence 445555555 5999999998743 789999999999999999988888899999999999999999999999754
Q ss_pred CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC-CC
Q 001163 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EG 654 (1134)
Q Consensus 576 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~ 654 (1134)
..|++||.+++.++.++.+|.+ .|..+.|++++++|+++|.|..++++|+++.+.+.++.+| ...|.++.|+| ..
T Consensus 244 -nlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H--kkdv~~~~WhP~~~ 319 (464)
T KOG0284|consen 244 -NLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH--KKDVTSLTWHPLNE 319 (464)
T ss_pred -ceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc--hhhheeeccccccc
Confidence 3799999999999999999998 8999999999999999999999999999999988888866 77899999999 66
Q ss_pred cEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCc
Q 001163 655 ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSR 734 (1134)
Q Consensus 655 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 734 (1134)
.+|.+|+.||.|..|.+.....
T Consensus 320 ~lftsgg~Dgsvvh~~v~~~~p---------------------------------------------------------- 341 (464)
T KOG0284|consen 320 SLFTSGGSDGSVVHWVVGLEEP---------------------------------------------------------- 341 (464)
T ss_pred cceeeccCCCceEEEecccccc----------------------------------------------------------
Confidence 7899999999999998752200
Q ss_pred cCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCC
Q 001163 735 NFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPR 807 (1134)
Q Consensus 735 ~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~ 807 (1134)
+.....+|...|.+++|+|=|..|++++.|.++++|....
T Consensus 342 ---------------------------------~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 342 ---------------------------------LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred ---------------------------------ccCCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 0011124889999999999999999999999999997653
No 57
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1e-27 Score=257.34 Aligned_cols=552 Identities=13% Similarity=0.136 Sum_probs=378.7
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
..++|+++|||.+.+. ||.+-.||.|.||++..+=.... .+..+-...|-+++|+ ++..|.
T Consensus 24 ~Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~~~-----------------vi~g~~drsIE~L~W~-e~~RLF 84 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFLEP-----------------VIHGPEDRSIESLAWA-EGGRLF 84 (691)
T ss_pred eccceEEEEEeccCCc-eeeeccCCcEEEEccCCCceeeE-----------------EEecCCCCceeeEEEc-cCCeEE
Confidence 4678999999999885 68999999999999987643221 0123455789999999 667788
Q ss_pred EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE--EecCCCcCEEE
Q 001163 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY--IFEGHESPVYS 512 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~h~~~v~~ 512 (1134)
+.+.+|.|.-||+.+++... .+....+.|++++.+|.+. .++.|+.||.+...+...++..+ .|....++|.+
T Consensus 85 S~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLs 159 (691)
T KOG2048|consen 85 SSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLS 159 (691)
T ss_pred eecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEEE
Confidence 88999999999999987655 5677888999999999998 68999999988888888887664 34456689999
Q ss_pred EeccccCCccEEEEecCCCcEEEEecCCCCceeeecC--------CCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeC
Q 001163 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA--------PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 584 (1134)
Q Consensus 513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 584 (1134)
+.|++ ++..+++|+.||.|++||...+........ ...-|.++.|-.++ .|++| |..+.|.+||.
T Consensus 160 lsw~~--~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sg----DS~G~V~FWd~ 232 (691)
T KOG2048|consen 160 LSWNP--TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASG----DSAGTVTFWDS 232 (691)
T ss_pred EEecC--CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEe----cCCceEEEEcc
Confidence 99865 447899999999999999988776652221 11246677777555 45555 45678999999
Q ss_pred CCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce--eEEEecCCCCCCcceEEEcCCCcEEEEEEC
Q 001163 585 SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL--LASIDADGGLQASPCIRFNKEGILLAVSTN 662 (1134)
Q Consensus 585 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~ 662 (1134)
..+.+++.+..|.. .|.+++..+++++++++|.|+.|.-+...++.. +.......|...|.+++..++ .+++|+.
T Consensus 233 ~~gTLiqS~~~h~a-dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~ 309 (691)
T KOG2048|consen 233 IFGTLIQSHSCHDA-DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGR 309 (691)
T ss_pred cCcchhhhhhhhhc-ceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecce
Confidence 99999999999887 899999999999999999999999988776543 333333344557899998877 8999999
Q ss_pred CCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccc
Q 001163 663 DNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPK 742 (1134)
Q Consensus 663 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1134)
|.++.+-..... ....|..... . | ..+.......+.+
T Consensus 310 d~~l~i~~s~~~-----~~~~h~~~~~-------------~------------------p-------~~~~v~~a~~~~L 346 (691)
T KOG2048|consen 310 DFTLAICSSREF-----KNMDHRQKNL-------------F------------------P-------ASDRVSVAPENRL 346 (691)
T ss_pred eeEEEEcccccc-----Cchhhhcccc-------------c------------------c-------ccceeecCccceE
Confidence 998887543321 0111110000 0 0 0000011112233
Q ss_pred cccccccccceeeecccCCccc---eeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccC
Q 001163 743 IADEAVEKSRIWKLTEITEPSQ---CRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTN 819 (1134)
Q Consensus 743 ~~~~~d~~i~iw~~~~~~~~~~---~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 819 (1134)
..--.+..+.+|.+......+. ...+.+. ......|.+.+.||+|++++.+.-. ..+||.++... ..
T Consensus 347 ~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~-~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~-----~v--- 416 (691)
T KOG2048|consen 347 LVLWKAHGVDLWRLGSVILQGEYNYIHLLKLF-TKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDP-----NV--- 416 (691)
T ss_pred EEEeccccccceeccCcccccccChhhheeee-cCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCc-----ce---
Confidence 3444445677777765422211 1111111 2245789999999999988776643 56777766321 00
Q ss_pred CCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee--CCeEEEEEccCCe--EEEEec--CCCCCeEEEEEc
Q 001163 820 QAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFK--TMTTFM--PPPPAATFLAFH 893 (1134)
Q Consensus 820 ~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~--~~~~~~--~~~~~v~~l~~s 893 (1134)
++-.++ ..+. ..-....+.|+-|+..++..+ ...+.++++++.. .+..+. +....|..++.|
T Consensus 417 ---k~~~v~-------~~~~--~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~S 484 (691)
T KOG2048|consen 417 ---KVINVD-------DVPL--ALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVS 484 (691)
T ss_pred ---eEEEec-------cchh--hhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEc
Confidence 000000 0110 234567888998888777776 4678888876543 222222 234679999999
Q ss_pred CCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEe-eCCCEEEEEeCCCcEEEEECCCCccccceeeee---
Q 001163 894 PQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS-NTLNVLVSSGADSQLCVWSTDGWEKQASKFLTI--- 969 (1134)
Q Consensus 894 p~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s-~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~--- 969 (1134)
| +|+++|+.+.+|.|.+|++.+++.......-...|++++|+ .+...|+.+..|+++.-||++..+...+.....
T Consensus 485 s-dG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nl 563 (691)
T KOG2048|consen 485 S-DGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNL 563 (691)
T ss_pred C-CCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhcccccc
Confidence 9 99999999999999999999887654443445789999999 566789999999999999995544333222211
Q ss_pred cCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCC
Q 001163 970 PNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAP 1006 (1134)
Q Consensus 970 ~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~ 1006 (1134)
+.........+..+.|+|.....+.. ..+-+.+.|..
T Consensus 564 pk~~~~l~~~~~gisfd~~n~s~~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 564 PKEPKTLIPGIPGISFDPKNSSRFIVYDAHWSCLIDFS 601 (691)
T ss_pred ccChhhcCCCCceEEeCCCCccEEEEEcCcEEEEEecC
Confidence 11111122567888898877665554 44556666554
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2.2e-29 Score=276.78 Aligned_cols=283 Identities=24% Similarity=0.410 Sum_probs=249.6
Q ss_pred ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001163 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (1134)
Q Consensus 354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 433 (1134)
+|.+.|++++|+|+++ ++++|+.||.|.+||+.+++.... +.+|...+.++.|+|+++++
T Consensus 7 ~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 7 GHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASADGTYL 66 (289)
T ss_pred ccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCCCCEE
Confidence 4889999999999998 567888999999999988764432 46788999999999999999
Q ss_pred EEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEE
Q 001163 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513 (1134)
Q Consensus 434 as~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 513 (1134)
++++.||.|++||+.+++... .+..|...|.++.|+++++ ++++++.|+.|++||+.+++....+..|...|.++
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred EEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 999999999999999876554 5778999999999999977 78888889999999999999999999999999999
Q ss_pred eccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEe
Q 001163 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY 593 (1134)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 593 (1134)
+|++. +.++++++.|+.|++||+...+....+..+...+.++.|+|+++.+++++. ++.+.+||+.+++.+..+
T Consensus 142 ~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 142 AFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred EEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecch
Confidence 99765 478888888999999999887777777777779999999999999988875 345999999999988888
Q ss_pred cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEE
Q 001163 594 HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA 670 (1134)
Q Consensus 594 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~ 670 (1134)
..+.. .+.++.|++++.++++++.+|.|++||+.+++....+..+ ...+.+++|+|++.++++++.||.+++|+
T Consensus 216 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 216 RGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hhcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77766 8999999999888888888999999999998888888744 56899999999999999999999999995
No 59
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2.8e-31 Score=260.76 Aligned_cols=232 Identities=16% Similarity=0.319 Sum_probs=203.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC
Q 001163 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT 496 (1134)
Q Consensus 417 h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~ 496 (1134)
....|+|+.+ |...+++|..|.+|+|||.++-.+++ .+.||++.|.|+.|. .+ .+++||.|.+|+|||+.+
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence 3458999998 67889999999999999999977666 689999999999985 45 899999999999999999
Q ss_pred CceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCce---eeecCCCCCeeEEEECcCCCEEEEEecCC
Q 001163 497 GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR---VDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (1134)
Q Consensus 497 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 573 (1134)
|+++.++-+|...|..+.|+. .++++++.|.++.+||+...... ..+.+|...|..+.|+ .+++++++.
T Consensus 267 ge~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASg-- 338 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG-- 338 (499)
T ss_pred CchhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecC--
Confidence 999999999999999999842 58999999999999999876533 3467788889988885 458998865
Q ss_pred CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCC
Q 001163 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 653 (1134)
Q Consensus 574 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 653 (1134)
+.+|++|++.+++.++++.+|.. .|.++.+ .++++++|+.|.+|++||+..|.++..+++| ..-|.|+.|.
T Consensus 339 --DRTikvW~~st~efvRtl~gHkR-GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGH--EeLvRciRFd-- 409 (499)
T KOG0281|consen 339 --DRTIKVWSTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRFD-- 409 (499)
T ss_pred --CceEEEEeccceeeehhhhcccc-cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhch--HHhhhheeec--
Confidence 55799999999999999999987 6766655 5789999999999999999999999999866 6789999996
Q ss_pred CcEEEEEECCCcEEEEEccCC
Q 001163 654 GILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 654 ~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
.+.+++|+.||+|++||+..+
T Consensus 410 ~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 410 NKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred CceeeeccccceEEEEecccc
Confidence 568999999999999999776
No 60
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=5.6e-31 Score=271.35 Aligned_cols=285 Identities=19% Similarity=0.253 Sum_probs=241.6
Q ss_pred ccccccEEEEEEec-CCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEE
Q 001163 773 NLTAMRVSRLIYTN-SGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFAL 851 (1134)
Q Consensus 773 ~~~~~~i~~l~~sp-dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~ 851 (1134)
.+|...|+++.|.| .+.+|++++.|+.|+||++- + .+.++.. +.+ |..+|.+++|
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy-------------------~--~~~~lrt-f~g--H~k~Vrd~~~ 266 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVY-------------------D--DRRCLRT-FKG--HRKPVRDASF 266 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEEe-------------------c--Ccceehh-hhc--chhhhhhhhc
Confidence 56999999999999 89999999999999999753 3 3344432 444 9999999999
Q ss_pred cCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCce
Q 001163 852 SKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRI 930 (1134)
Q Consensus 852 s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V 930 (1134)
+.+|..+.+++ |+.|++||+++|+++..+. ....++|+.|.|++.+.+++|+.|+.|+.||+++++.++.+..|-+.|
T Consensus 267 s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i 345 (503)
T KOG0282|consen 267 NNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAI 345 (503)
T ss_pred cccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhe
Confidence 99999999999 9999999999999999996 456789999999655899999999999999999999999999999999
Q ss_pred EEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcc
Q 001163 931 TGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLE 1009 (1134)
Q Consensus 931 ~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~ 1009 (1134)
..+.|-++|++++++++|++++||+....-..+ .+.....| ...++..+|.++++++ +.|..|.+|.+...-
T Consensus 346 ~~i~F~~~g~rFissSDdks~riWe~~~~v~ik--~i~~~~~h-----smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~ 418 (503)
T KOG0282|consen 346 LDITFVDEGRRFISSSDDKSVRIWENRIPVPIK--NIADPEMH-----TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF 418 (503)
T ss_pred eeeEEccCCceEeeeccCccEEEEEcCCCccch--hhcchhhc-----cCcceecCCCCCeehhhccCceEEEEeccccc
Confidence 999999999999999999999999988744221 22222222 3688999999999999 899999999875432
Q ss_pred ---cceeeccCCC--ccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCC
Q 001163 1010 ---CLKQFVPREA--SGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDP 1084 (1134)
Q Consensus 1010 ---~~~~~~~~~h--~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~ 1084 (1134)
....+. +| .+--..+.|||||++|++|+.||.+.+||..+-+++..+. +|...+..+ .|+|...
T Consensus 419 r~nkkK~fe--Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk-------ah~~~ci~v--~wHP~e~ 487 (503)
T KOG0282|consen 419 RLNKKKRFE--GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK-------AHDQPCIGV--DWHPVEP 487 (503)
T ss_pred ccCHhhhhc--ceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc-------cCCcceEEE--EecCCCc
Confidence 122333 55 5667789999999999999999999999999999887776 565666555 9999999
Q ss_pred CEEEEEecCCcEEEEe
Q 001163 1085 NQFALGLTDGGVYIIE 1100 (1134)
Q Consensus 1085 ~~l~s~~~Dg~v~vW~ 1100 (1134)
..+|+++.||.|++|+
T Consensus 488 Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeEecccCceeEecC
Confidence 9999999999999996
No 61
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=9.4e-31 Score=246.04 Aligned_cols=288 Identities=20% Similarity=0.313 Sum_probs=253.6
Q ss_pred EEEeecCCCeeEEEEcC---CCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEE
Q 001163 350 VMTLNQGSAVKSMDFHP---VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (1134)
Q Consensus 350 ~~~~~h~~~V~~v~fsp---~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 426 (1134)
+..-+|..+|..++||| +| |+|.+++.||.-.+-+-++|.-+.+ +.||.+.|++...
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l 67 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATL 67 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeec
Confidence 34456999999999996 56 5788999999999999999987765 7899999999999
Q ss_pred cCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc-eeEEecC
Q 001163 427 SPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-KQYIFEG 505 (1134)
Q Consensus 427 spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~ 505 (1134)
+.+..+.|+++.|-+.+|||.-+|..+. ++ .|..-|.+++|+.|.+ +|+||+.++.++|+|+...+ +...+.+
T Consensus 68 ~~na~~aasaaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~g 141 (334)
T KOG0278|consen 68 NKNATRAASAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISG 141 (334)
T ss_pred Cchhhhhhhhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcC
Confidence 9999999999999999999999998776 33 4889999999999999 79999999999999998764 5678999
Q ss_pred CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC
Q 001163 506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 585 (1134)
Q Consensus 506 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 585 (1134)
|.+.|..+.|.... +.|++.+.|++||+||.+++.....+.. .++|+++.++++|++|.++... .|..||..
T Consensus 142 htg~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~gs-----sV~Fwdak 213 (334)
T KOG0278|consen 142 HTGGIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYGS-----SVKFWDAK 213 (334)
T ss_pred CCCcceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecCc-----eeEEeccc
Confidence 99999999987554 6788889999999999999888877765 5689999999999998887432 39999999
Q ss_pred CCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCc
Q 001163 586 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNG 665 (1134)
Q Consensus 586 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~ 665 (1134)
+...++.+.... .|.+...+|+...+++|++|..++.||+.+++.+... ..+|.++|.|+.|+|+|...++|+.||+
T Consensus 214 sf~~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 214 SFGLLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred cccceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCceeeccCCCce
Confidence 999998887765 5888999999999999999999999999999999886 2355889999999999999999999999
Q ss_pred EEEEEccCC
Q 001163 666 IKILANADG 674 (1134)
Q Consensus 666 i~iw~~~~~ 674 (1134)
|++|....+
T Consensus 291 irlWQt~~~ 299 (334)
T KOG0278|consen 291 IRLWQTTPG 299 (334)
T ss_pred EEEEEecCC
Confidence 999988665
No 62
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.5e-29 Score=235.93 Aligned_cols=247 Identities=19% Similarity=0.277 Sum_probs=217.4
Q ss_pred cccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEE
Q 001163 412 SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (1134)
Q Consensus 412 ~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i 491 (1134)
..+..|+++|.++.|+-||+|.++++.|.+|++|+...|.+++ +..+|...|..++.+.|+. .+++|+.|+.+.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v 85 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV 85 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence 3578899999999999999999999999999999999999887 7889999999999999998 6999999999999
Q ss_pred EECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCC--ceeeecCCCCCeeEEEECcCCCEEEEE
Q 001163 492 WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG--SRVDYDAPGHSSTMMAYSADGARLFSC 569 (1134)
Q Consensus 492 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~ 569 (1134)
||+.+|+.++.|++|.+.|+.+.|+... ..+++|+.|.++++||-+... ++..+......|.++..+ +..++++
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNees--SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNEES--SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecCcc--eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEee
Confidence 9999999999999999999999996544 899999999999999987654 444455455577777764 5678888
Q ss_pred ecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEE
Q 001163 570 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR 649 (1134)
Q Consensus 570 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 649 (1134)
+.|+ .++.||++.|+....+-++ +|++++|+++++..++++-|+++++.|-.+|+++..+.+|.....-..++
T Consensus 162 S~DG----tvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~ 234 (307)
T KOG0316|consen 162 SVDG----TVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC 234 (307)
T ss_pred ccCC----cEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeee
Confidence 7654 5999999999988777775 89999999999999999999999999999999999999876655555677
Q ss_pred EcCCCcEEEEEECCCcEEEEEccCC
Q 001163 650 FNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 650 ~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
++.....+++|++||.+++||+.+.
T Consensus 235 l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 235 LNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred ecccceeEEeccCCceEEEEEeccc
Confidence 7777789999999999999999877
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.7e-28 Score=304.17 Aligned_cols=292 Identities=12% Similarity=0.165 Sum_probs=236.1
Q ss_pred ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC-CCCE
Q 001163 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTL 432 (1134)
Q Consensus 354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~ 432 (1134)
.|...|++++|+|+|+ ++|+|+.|+.|+|||......... . ...... ...+...|.+++|+| ++.+
T Consensus 481 ~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~-~~~~~~~v~~l~~~~~~~~~ 547 (793)
T PLN00181 481 NSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVV-ELASRSKLSGICWNSYIKSQ 547 (793)
T ss_pred CCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceE-EecccCceeeEEeccCCCCE
Confidence 3889999999999999 568999999999999864211000 0 000000 112356899999998 5889
Q ss_pred EEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEec-CCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEE
Q 001163 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY-PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 511 (1134)
Q Consensus 433 las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~ 511 (1134)
||+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|+||+.|++|++||+.++..+..+..+ ..|.
T Consensus 548 las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~ 621 (793)
T PLN00181 548 VASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANIC 621 (793)
T ss_pred EEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCeE
Confidence 9999999999999999887655 6789999999999997 666 7999999999999999999999888755 6788
Q ss_pred EEeccccCCccEEEEecCCCcEEEEecCCCC-ceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC---
Q 001163 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLG-SRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG--- 587 (1134)
Q Consensus 512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--- 587 (1134)
++.|.+ +++.+|++|+.||.|++||++... ....+..|...|.++.|. ++..+++++.|+ .|++||+..+
T Consensus 622 ~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~----~ikiWd~~~~~~~ 695 (793)
T PLN00181 622 CVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDN----TLKLWDLSMSISG 695 (793)
T ss_pred EEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCC----EEEEEeCCCCccc
Confidence 888853 456899999999999999998765 345566788899999997 778899887644 5999999743
Q ss_pred ---eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEe-----------cCCCCCCcceEEEcCC
Q 001163 588 ---AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID-----------ADGGLQASPCIRFNKE 653 (1134)
Q Consensus 588 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~v~~v~~sp~ 653 (1134)
..+..+.+|.. .+..++|++++.+|++|+.|+.|++|+.....++.... ...+...|.+++|+|+
T Consensus 696 ~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 696 INETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred cCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence 56788888876 78899999999999999999999999987665443321 1223456899999999
Q ss_pred CcEEEEEECCCcEEEEEc
Q 001163 654 GILLAVSTNDNGIKILAN 671 (1134)
Q Consensus 654 ~~~l~~~~~dg~i~iw~~ 671 (1134)
+..|++|+.||.|+||++
T Consensus 775 ~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 775 SSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCeEEEecCCCcEEEEec
Confidence 999999999999999985
No 64
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2.9e-28 Score=267.76 Aligned_cols=247 Identities=24% Similarity=0.395 Sum_probs=218.6
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 493 (1134)
+.+|.++|++++|+|++++|++++.||.|++|++.+++... .+..|...+..+.|+++++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 56899999999999999999999999999999999876444 5778999999999999997 799999999999999
Q ss_pred CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCC
Q 001163 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (1134)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 573 (1134)
+.+++.+..+..|...+.++.|++. +.++++++.|+.|++||+.+.+....+..+...+.++.|+|++.++++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~- 156 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD- 156 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCC-
Confidence 9998899999999999999999765 4788888889999999999777777777777789999999999888887633
Q ss_pred CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCC
Q 001163 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 653 (1134)
Q Consensus 574 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 653 (1134)
+.+.+||+.+++.+..+..+.. .+.++.|+|+++.+++++.+|.|++||+.+++.+..+..+ ...+.++.|+|+
T Consensus 157 ---~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~ 230 (289)
T cd00200 157 ---GTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH--ENGVNSVAFSPD 230 (289)
T ss_pred ---CcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc--CCceEEEEEcCC
Confidence 3599999999998888887765 8999999999999999999999999999998888877644 558999999999
Q ss_pred CcEEEEEECCCcEEEEEccCC
Q 001163 654 GILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 654 ~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
+.++++++.||.+++|++.++
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCc
Confidence 889988888999999998764
No 65
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1e-28 Score=239.36 Aligned_cols=307 Identities=16% Similarity=0.219 Sum_probs=240.6
Q ss_pred EeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccc-cCccccccccccCCCCEEEEEEcCCC
Q 001163 352 TLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGA-CSMPLQASLSSDYTASVNRVMWSPDG 430 (1134)
Q Consensus 352 ~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~V~~l~~spd~ 430 (1134)
.-.|++.+.+.+|||||. |+|+|+.|..|+|.|++..-... ....+..... ...|. ...+..|.++|+++.|+|..
T Consensus 108 lt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks-~~~em~~~~~qa~hPv-IRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKS-KPKEMISGDTQARHPV-IRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred EeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhc-chhhhccCCcccCCce-EeehhhccCcccceeecchh
Confidence 344999999999999998 88999999999999997321100 0000000000 01111 12477899999999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe---cCCC
Q 001163 431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF---EGHE 507 (1134)
Q Consensus 431 ~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---~~h~ 507 (1134)
..|++|+.|++|+++|+......+.++.+ ....+|.++.|+|.|. +|+.|....++++||+.+-++-..- .+|.
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 99999999999999999865433333223 3456899999999999 8999999999999999998876543 4699
Q ss_pred cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec-CCC-CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC
Q 001163 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-APG-HSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 585 (1134)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 585 (1134)
+.|+++.+++ .+.+.++++.||.|++||--..+++..+. .|+ ..|.+..|..+|+++++.+. +..+++|.+.
T Consensus 262 ~ai~~V~Ys~--t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkLWEi~ 335 (430)
T KOG0640|consen 262 GAITQVRYSS--TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKLWEIS 335 (430)
T ss_pred cceeEEEecC--CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeeeeeec
Confidence 9999998854 45899999999999999987777776654 343 38999999999999999876 4469999999
Q ss_pred CCeeEEEecCCCCC----ceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEE
Q 001163 586 EGAVKRTYHGLGKR----SVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 660 (1134)
Q Consensus 586 ~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~ 660 (1134)
+++.+..+.|.... .-+...|+....+++.-. ..+.+.-||.+++..+..+.. +|.+.+..+.-+|.+.-++++
T Consensus 336 t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~FmTc 414 (430)
T KOG0640|consen 336 TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEPAFMTC 414 (430)
T ss_pred CCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCCceeee
Confidence 99999999876211 123355777777877766 567899999999887776654 678899999999999999999
Q ss_pred ECCCcEEEEEc
Q 001163 661 TNDNGIKILAN 671 (1134)
Q Consensus 661 ~~dg~i~iw~~ 671 (1134)
++|..+|+|--
T Consensus 415 sdD~raRFWyr 425 (430)
T KOG0640|consen 415 SDDFRARFWYR 425 (430)
T ss_pred cccceeeeeee
Confidence 99999999963
No 66
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=9.5e-28 Score=222.03 Aligned_cols=309 Identities=17% Similarity=0.252 Sum_probs=241.1
Q ss_pred eeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163 348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1134)
Q Consensus 348 ~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (1134)
+.+.++.....|.+++|+|.|. |.|+|++.++.+|-....-..++.. .+............-+.|.+.|.|.+||
T Consensus 24 ~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkgsiyc~~ws 98 (350)
T KOG0641|consen 24 EAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKGSIYCTAWS 98 (350)
T ss_pred EEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCccEEEEEec
Confidence 4566778889999999999999 7799999999998876432222100 0000001111112246799999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEcc--CCceeeeeeeeecCCCCEEEEEEecC---CCceEEEEEe-CCCeEEEEECCCCceeE
Q 001163 428 PDGTLFGVAYSKHIVHLYTYH--GGDELRNHLEIEAHVGSVNDLAFSYP---NKQLSVVTCG-EDRVIKVWDAVTGTKQY 501 (1134)
Q Consensus 428 pd~~~las~s~dg~v~iwd~~--~~~~~~~~~~l~~h~~~V~~v~~s~~---~~~~~l~s~s-~d~~i~iwd~~~~~~~~ 501 (1134)
|+|.++|+|++|.+|++.-.+ +.........+..|.+.|..++|..+ +.. +|++++ .|..|++-|..+|+..+
T Consensus 99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~~ 177 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGFH 177 (350)
T ss_pred CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcce
Confidence 999999999999999987554 33334444568889999999999754 222 566665 47899999999999999
Q ss_pred EecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecC-------CCCCeeEEEECcCCCEEEEEecCCC
Q 001163 502 IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-------PGHSSTMMAYSADGARLFSCGTNKE 574 (1134)
Q Consensus 502 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~~~~ 574 (1134)
.+.+|.+-|.++.- . ++-.+++|+.|.+|++||++-..+...+.. ....|.++++.|.|++|+++..|.
T Consensus 178 a~sghtghilalys-w--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds- 253 (350)
T KOG0641|consen 178 ALSGHTGHILALYS-W--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS- 253 (350)
T ss_pred eecCCcccEEEEEE-e--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC-
Confidence 99999999998752 2 347899999999999999987766655432 124789999999999999986543
Q ss_pred CCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----ceeEEEecCCCCCCcceEEE
Q 001163 575 GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV----NLLASIDADGGLQASPCIRF 650 (1134)
Q Consensus 575 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~~ 650 (1134)
...+||++.++.++.|..|.. .|.++.|+|...++++++.|..|++-|+... -++.... .|...+..+.|
T Consensus 254 ---sc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~--ehkdk~i~~rw 327 (350)
T KOG0641|consen 254 ---SCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA--EHKDKAIQCRW 327 (350)
T ss_pred ---ceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE--eccCceEEEEe
Confidence 488999999999999999987 8999999999999999999999999998642 1223333 44667889999
Q ss_pred cCCCcEEEEEECCCcEEEEEcc
Q 001163 651 NKEGILLAVSTNDNGIKILANA 672 (1134)
Q Consensus 651 sp~~~~l~~~~~dg~i~iw~~~ 672 (1134)
+|..-.+++.+.|.++.+|.+.
T Consensus 328 h~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 328 HPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cCccceeeeccCcceEEEeccC
Confidence 9999899999999999999753
No 67
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.7e-28 Score=302.25 Aligned_cols=296 Identities=13% Similarity=0.153 Sum_probs=231.4
Q ss_pred cccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcC
Q 001163 774 LTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK 853 (1134)
Q Consensus 774 ~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~ 853 (1134)
.|...|.+++|+|+|+++++++.|+.|+||++..... .+. +.. ... ..+ .+...+.+++|++
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~--~~~----------~~~--~~~-~~~---~~~~~v~~l~~~~ 542 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIK--DGR----------DIH--YPV-VEL---ASRSKLSGICWNS 542 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccc--ccc----------ccc--cce-EEe---cccCceeeEEecc
Confidence 4888999999999999999999999999998753100 000 000 000 001 1346788999987
Q ss_pred -CCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceE
Q 001163 854 -NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRIT 931 (1134)
Q Consensus 854 -dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~ 931 (1134)
++.+|++++ ||+|++||+.+++.+..+.+|...|++++|+|.++.+|++|+.||.|++||+.+++.+..+..| ..|.
T Consensus 543 ~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~ 621 (793)
T PLN00181 543 YIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANIC 621 (793)
T ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeE
Confidence 478899988 9999999999999999999999999999999757889999999999999999999888888755 6799
Q ss_pred EEEEe-eCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCc-
Q 001163 932 GLAFS-NTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKL- 1008 (1134)
Q Consensus 932 ~l~~s-~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~- 1008 (1134)
++.|+ +++.+|++|+.|+.|++||+...+. .+....+|. ..|.++.|. ++.+|++ +.|++|++||+..+
T Consensus 622 ~v~~~~~~g~~latgs~dg~I~iwD~~~~~~----~~~~~~~h~---~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~ 693 (793)
T PLN00181 622 CVQFPSESGRSLAFGSADHKVYYYDLRNPKL----PLCTMIGHS---KTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSI 693 (793)
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCCc----cceEecCCC---CCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCc
Confidence 99995 5799999999999999999986431 122333444 468999997 6667777 68999999999753
Q ss_pred -----ccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCc------ccCCCCCCCceeEEE
Q 001163 1009 -----ECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTA------YLPTNPSLRVYPLVI 1077 (1134)
Q Consensus 1009 -----~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~------~~~~~h~~~v~~~~~ 1077 (1134)
..+..+. +|...+..++|++++.+|++|+.|++|++|+.........+.... .....|...|.++
T Consensus 694 ~~~~~~~l~~~~--gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v-- 769 (793)
T PLN00181 694 SGINETPLHSFM--GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSV-- 769 (793)
T ss_pred cccCCcceEEEc--CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEE--
Confidence 3455555 889999999999999999999999999999987765543322110 0111244445555
Q ss_pred EecCCCCCEEEEEecCCcEEEEeC
Q 001163 1078 AGNPTDPNQFALGLTDGGVYIIEP 1101 (1134)
Q Consensus 1078 ~~~p~~~~~l~s~~~Dg~v~vW~~ 1101 (1134)
+|+| ++.+|++|+.||.|++|++
T Consensus 770 ~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 770 CWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEcC-CCCeEEEecCCCcEEEEec
Confidence 8889 7899999999999999986
No 68
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.97 E-value=1.2e-27 Score=252.62 Aligned_cols=672 Identities=14% Similarity=0.151 Sum_probs=361.1
Q ss_pred ccccCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEEccCCcee---eeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCe
Q 001163 413 LSSDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDEL---RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV 488 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~sp-d~~~las~s~dg~v~iwd~~~~~~~---~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~ 488 (1134)
++.+|.+.|+.+.||| +..+||+||.|..|+||.+..|-.- .....+.+..-.|.++.|+|.... |+..+..|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg--il~s~a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG--ILASGAHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc--eEEeccCce
Confidence 4789999999999999 7889999999999999999854321 112223444557899999998774 444455689
Q ss_pred EEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCC-ceeeecCCCC-CeeEEEECcCCCEE
Q 001163 489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG-SRVDYDAPGH-SSTMMAYSADGARL 566 (1134)
Q Consensus 489 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~-~v~~~~~s~~~~~l 566 (1134)
++|||+.+++.+..+.+|...|.+..| +.||.+|++.+.|+.|+|||.+... .......|++ .-..+.|.-+-.+|
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~W--seDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADW--SEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhcccc--ccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 999999999999999999999999988 4677999999999999999988644 3344455544 44567787777788
Q ss_pred EEEecCCCCCeEEEEEeCCCC-eeEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeE--EEecCCCC
Q 001163 567 FSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLA--SIDADGGL 642 (1134)
Q Consensus 567 ~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~--~~~~~~~~ 642 (1134)
++.+.+......|++||.+.. ..+.++.......+..--|.||.+.++.++ .+.+++.+.+...++.. .+... ..
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~t-le 308 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELT-LE 308 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhc-ch
Confidence 888877666777999998764 455555554444566667899998887776 77888888877654321 11110 01
Q ss_pred CCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeE--------EEeccCcccccccchhhh-hcccccccccc----cc
Q 001163 643 QASPCIRFNKEGILLAVSTNDNGIKILANADGIRLL--------RTVESRTFDASRVASAAI-VKAPAIGTFGS----AN 709 (1134)
Q Consensus 643 ~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~ 709 (1134)
......++-|...+-+..++ ..+++.+... ..+ +.++........-..... .+...-...|+ ..
T Consensus 309 ~~~~GA~lvpkral~VM~~E--V~rvlQLt~~-~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqK 385 (1012)
T KOG1445|consen 309 EQTLGATLVPKRALHVMDGE--VDRVLQLTKS-SIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQK 385 (1012)
T ss_pred hhhccceecchhhhhhcchh--hhhheecccC-ceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccccc
Confidence 11122333333222222221 1122222111 000 000000000000000000 00000000000 00
Q ss_pred cccccCcCCCCc----ccc-----cccCC----------------CCCCccCccc--ccccccccccccceeeecccCCc
Q 001163 710 ANVGTSLGERTA----PAA-----AMVGM----------------SNDSRNFTDV--KPKIADEAVEKSRIWKLTEITEP 762 (1134)
Q Consensus 710 ~~~s~~~~~~~~----~~~-----~~~~~----------------~~~~~~~~~~--~~~~~~~~d~~i~iw~~~~~~~~ 762 (1134)
+++.|....+.+ ++. ....| +..+...++. +..+. ....++-.+.......
T Consensus 386 vSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~--~~~e~r~l~~~~~E~~ 463 (1012)
T KOG1445|consen 386 VSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVP--KKEEVRELDYRPYEKE 463 (1012)
T ss_pred cccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcC--cchhhhhhcccccccc
Confidence 011111111100 000 00000 0000011110 00000 0001111111000000
Q ss_pred cceeccc---cCCccccccEEEEEEecCCceeeeec----cC--CeEEeeec----CCCCCCccc--c-cccCC------
Q 001163 763 SQCRSLR---LPDNLTAMRVSRLIYTNSGLAILALA----SN--AVHKLWKW----PRNERNSTG--K-ATTNQ------ 820 (1134)
Q Consensus 763 ~~~~~~~---~~~~~~~~~i~~l~~spdg~~l~~~~----~d--g~i~vw~~----~~~~~~~~~--~-~~~~~------ 820 (1134)
.....-. -...+....+..+ +|....++--. .| .+..+-.- ......+.+ . +.++.
T Consensus 464 ~g~~~~~~dad~~~g~sS~~s~~--~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~ 541 (1012)
T KOG1445|consen 464 NGVHTPNADADSTQGNSSPISTI--SPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQ 541 (1012)
T ss_pred cCccCCCcccccccCCCCCcccc--CCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccccccc
Confidence 0000000 0000011111100 00000000000 00 00000000 000000000 0 00000
Q ss_pred CCcccCCCCCcccc-cCCCC-CCCCC-------------CeeEEEEcCCCCeEEEe---eCCeEEEEEccC-CeEEEE-e
Q 001163 821 APQLWQPPSGILMT-NDISD-TNPED-------------AVPCFALSKNDSYVMSA---SGGKISLFNMMT-FKTMTT-F 880 (1134)
Q Consensus 821 ~~~~~d~~~~~~~~-~~~~~-~~h~~-------------~v~~v~~s~dg~~la~~---sdg~i~lwd~~~-~~~~~~-~ 880 (1134)
.++--...-|+... ..+.| .+|.. +-.+=-|+.+..++|+- +.|.|-||++.. |++... +
T Consensus 542 s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~ 621 (1012)
T KOG1445|consen 542 SVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVM 621 (1012)
T ss_pred cccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccc
Confidence 00000000000000 00000 01111 11122244456666643 478999999854 332211 1
Q ss_pred cC--CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccc-------eEEEeccCccCceEEEEEeeC-CCEEEEEeCCCc
Q 001163 881 MP--PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD-------EVKTKLKGHQKRITGLAFSNT-LNVLVSSGADSQ 950 (1134)
Q Consensus 881 ~~--~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~-------~~~~~l~~h~~~V~~l~~s~d-~~~l~s~s~Dg~ 950 (1134)
.+ ....|+.+.|.|-|...||++++||.|++|.+..+ +.-..+.+|...|+++.|+|- ...|++++.|.+
T Consensus 622 p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T 701 (1012)
T KOG1445|consen 622 PGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST 701 (1012)
T ss_pred cccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccce
Confidence 11 34569999999999999999999999999999764 334678899999999999984 478999999999
Q ss_pred EEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEc
Q 001163 951 LCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYS 1029 (1134)
Q Consensus 951 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s 1029 (1134)
|++||+.+.+ ......+|. +.|..++|||||+.+|+ +.||+|++|+-..++..-.-....-...-..|.|.
T Consensus 702 i~lWDl~~~~-----~~~~l~gHt---dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wa 773 (1012)
T KOG1445|consen 702 IELWDLANAK-----LYSRLVGHT---DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWA 773 (1012)
T ss_pred eeeeehhhhh-----hhheeccCc---CceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEE
Confidence 9999999865 233455666 58999999999999999 79999999998877643221111112344567888
Q ss_pred cCCCEEEEEecCC----cEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCC
Q 001163 1030 CDSQSIYVAFEEG----SVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus 1030 ~dg~~l~s~s~Dg----~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
-||+++++.+-|+ .|.+||.++..........- ...-..+.=.|.++.+-+|++|-.|..|.+|++...+
T Consensus 774 cdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~l------Dvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 774 CDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVL------DVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred ecCcEEEEecccccchhhhhhhhhhhccCCcceeeee------cccCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 8999998888774 58899987754311111000 0000111124566667789999999999999997665
Q ss_pred CCccC
Q 001163 1106 GRWGT 1110 (1134)
Q Consensus 1106 ~~~~~ 1110 (1134)
.-..+
T Consensus 848 Py~lp 852 (1012)
T KOG1445|consen 848 PYLLP 852 (1012)
T ss_pred ceeee
Confidence 44333
No 69
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.3e-28 Score=245.98 Aligned_cols=290 Identities=20% Similarity=0.340 Sum_probs=241.1
Q ss_pred CCceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEE
Q 001163 345 LPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 424 (1134)
Q Consensus 345 ~~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 424 (1134)
.+++....+.|.+.|.++... ++ .+.+|++||+++|||........ +.||.++|.++
T Consensus 94 ~aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~Gk~~~~--------------------~~Ght~~ik~v 150 (423)
T KOG0313|consen 94 TAPKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLKGKSIKT--------------------IVGHTGPIKSV 150 (423)
T ss_pred CCCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecCCceEEE--------------------EecCCcceeee
Confidence 346677888899999999999 45 45799999999999987554332 68999999998
Q ss_pred EEcCCC---CEEEEEeCCCEEEEEEccCCceee-eeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECC-----
Q 001163 425 MWSPDG---TLFGVAYSKHIVHLYTYHGGDELR-NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV----- 495 (1134)
Q Consensus 425 ~~spd~---~~las~s~dg~v~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~----- 495 (1134)
+|--.. ..+++++.|.++++|.++.++... ....-.||...|.++...++|. .+++||.|.+|+||+..
T Consensus 151 ~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~ 228 (423)
T KOG0313|consen 151 AWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEED 228 (423)
T ss_pred EEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccc
Confidence 886533 369999999999999998776432 2223459999999999999999 79999999999999932
Q ss_pred --------------------CCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCee
Q 001163 496 --------------------TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSST 555 (1134)
Q Consensus 496 --------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~ 555 (1134)
++.++-++.||..+|.++.|.+ . ..+++++.|.+|+.||+.+++....+.. ...+.
T Consensus 229 ~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~--~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~ 304 (423)
T KOG0313|consen 229 ELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-A--TVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLN 304 (423)
T ss_pred cccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-C--CceEeecccceEEEEEeecccceeeeec-Cccee
Confidence 1234567889999999999965 3 6899999999999999999888777654 45789
Q ss_pred EEEECcCCCEEEEEecCCCCCeEEEEEeCCCC---eeEEEecCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCc
Q 001163 556 MMAYSADGARLFSCGTNKEGESYLVEWNESEG---AVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNVN 631 (1134)
Q Consensus 556 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 631 (1134)
++.++|..++|++++.++ .+++||.+++ -....|.+|.+ .|.++.|+|... .|++++.|+++++||+++.+
T Consensus 305 ~i~~~~~~~Ll~~gssdr----~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 305 CISYSPLSKLLASGSSDR----HIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred EeecccccceeeecCCCC----ceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 999999999999998654 5999999976 35668899988 999999999874 57778899999999999877
Q ss_pred -eeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163 632 -LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (1134)
Q Consensus 632 -~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 671 (1134)
++..+..| ...|.++.|+ ++..+++|+.|.+|+|+..
T Consensus 380 ~plydI~~h--~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 380 APLYDIAGH--NDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CcceeeccC--CceEEEEecc-CCceEEeccCcceEEEecc
Confidence 88888866 7789999998 4668999999999999864
No 70
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=8.7e-30 Score=247.75 Aligned_cols=291 Identities=18% Similarity=0.270 Sum_probs=235.7
Q ss_pred ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163 775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 854 (1134)
Q Consensus 775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d 854 (1134)
....+.|..|+|||+++++++-||.|.+|++..++...+-+..+. .. .+ -+..+|.|+.||.|
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---------d~-fM-------Mmd~aVlci~FSRD 274 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------DN-FM-------MMDDAVLCISFSRD 274 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh---------cc-ee-------ecccceEEEeeccc
Confidence 456788999999999999999999999998876543222211111 11 11 16789999999999
Q ss_pred CCeEEEee-CCeEEEEEccCCeEEEEec-CCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEE
Q 001163 855 DSYVMSAS-GGKISLFNMMTFKTMTTFM-PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITG 932 (1134)
Q Consensus 855 g~~la~~s-dg~i~lwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~ 932 (1134)
..++|+|+ ||+|++|.+.+|.|++.|. .|...|+|+.||. |+..+.+++.|.+++|.-+.+|++++.++||++-|+.
T Consensus 275 sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~ 353 (508)
T KOG0275|consen 275 SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE 353 (508)
T ss_pred HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccc
Confidence 99999999 9999999999999999987 8999999999999 7888899999999999999999999999999999999
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCC-CEEEE-EeeceEEEEeCCCccc
Q 001163 933 LAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQ-THLLA-VHETQIAIYEAPKLEC 1010 (1134)
Q Consensus 933 l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg-~~l~~-~~d~~i~iwd~~~~~~ 1010 (1134)
..|++||.++++++.||+|++|+.++.++.. .+.... .+.+|..+-.-|.+ ..+++ -..++|+|.++. |+.
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~-----Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQv 426 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGKTTECLS-----TFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQV 426 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCcchhhhh-----hccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceE
Confidence 9999999999999999999999999877433 222111 12457777776644 33444 467889998886 777
Q ss_pred ceeeccCC-CccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEE
Q 001163 1011 LKQFVPRE-ASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFAL 1089 (1134)
Q Consensus 1011 ~~~~~~~~-h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s 1089 (1134)
++.+..+. ..+...+.+.||.|.++++.++|+.++.|.+.+|++...+.... ..|- .++-+| ..++|++
T Consensus 427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE-------kdvI--Gl~HHP-HqNllAs 496 (508)
T KOG0275|consen 427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE-------KDVI--GLTHHP-HQNLLAS 496 (508)
T ss_pred EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc-------cccc--ccccCc-ccchhhh
Confidence 77776432 25677888999999999999999999999999999887766433 2233 347778 6889999
Q ss_pred EecCCcEEEEe
Q 001163 1090 GLTDGGVYIIE 1100 (1134)
Q Consensus 1090 ~~~Dg~v~vW~ 1100 (1134)
-+.||.+++|.
T Consensus 497 YsEDgllKLWk 507 (508)
T KOG0275|consen 497 YSEDGLLKLWK 507 (508)
T ss_pred hcccchhhhcC
Confidence 99999999996
No 71
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.7e-29 Score=254.89 Aligned_cols=294 Identities=18% Similarity=0.238 Sum_probs=250.1
Q ss_pred CCCCceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCE
Q 001163 343 DDLPKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASV 421 (1134)
Q Consensus 343 d~~~~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 421 (1134)
+.+|......+. |.+.|..+.|-++.. .+++|+.|..|.+|++..++.-. ...+.|..++|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhh-----------------hhhhhccCCCc
Confidence 344555566666 899999999999966 46999999999999998776211 11367888999
Q ss_pred EEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE
Q 001163 422 NRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY 501 (1134)
Q Consensus 422 ~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 501 (1134)
+.+.|.++++++++++.|+.+++|++...+... +|.||++.|+++.|..... .+++|+.|.+|++||+....|.+
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999987555 7999999999999998776 59999999999999999999988
Q ss_pred EecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEE
Q 001163 502 IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581 (1134)
Q Consensus 502 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 581 (1134)
++. ....+..|+.. ...+++|-.|+.|++||.+..........++ .|+++..++++..+++++.|. .+.+
T Consensus 298 t~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDd----tl~v 367 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDD----TLKV 367 (459)
T ss_pred ccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCC----ceee
Confidence 765 33445566543 2568999999999999999888888877755 999999999999999997643 5999
Q ss_pred EeCCCCeeEEEecCCC---CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEE
Q 001163 582 WNESEGAVKRTYHGLG---KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 658 (1134)
Q Consensus 582 wd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~ 658 (1134)
.|+++......+.... ....+.+.|+|++.|+++||.||.|+||++.++++...+........|++++|+|.|..++
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 9999998888776542 2246779999999999999999999999999999999998766555799999999999999
Q ss_pred EEECCCcEEEE
Q 001163 659 VSTNDNGIKIL 669 (1134)
Q Consensus 659 ~~~~dg~i~iw 669 (1134)
+++.++.+.+|
T Consensus 448 sadk~~~v~lW 458 (459)
T KOG0288|consen 448 SADKQKAVTLW 458 (459)
T ss_pred cccCCcceEec
Confidence 99999999999
No 72
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=3.1e-28 Score=276.54 Aligned_cols=306 Identities=19% Similarity=0.267 Sum_probs=247.6
Q ss_pred cCCCeeEEEEcCCCCeEEEEEe--CCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGT--NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 432 (1134)
+...|.+++.+|||.. +|+|+ .||.++||+.+.=-.- .+.++.. .+........|.+.|+|+.|||||+|
T Consensus 12 ~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~~----~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLDE----KEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCcee-EecCCccccccceeeccccccch----hhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 3456899999999994 68999 8999999997532100 0001110 12222236789999999999999999
Q ss_pred EEEEeCCCEEEEEEccC---C------------ceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC
Q 001163 433 FGVAYSKHIVHLYTYHG---G------------DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 497 (1134)
Q Consensus 433 las~s~dg~v~iwd~~~---~------------~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~ 497 (1134)
||+||+|+.|.||+... + +..+....+.+|+..|..++|+|++. +|+++|.|++|.|||..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999873 0 11234557899999999999999999 8999999999999999999
Q ss_pred ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCC------CCCeeEEEECcCCCEEEEEec
Q 001163 498 TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP------GHSSTMMAYSADGARLFSCGT 571 (1134)
Q Consensus 498 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~ 571 (1134)
+.+..+.+|.+.|..+.|.|. |+++++-+.|++|++|+...-+....+..+ ...+..+.|||||.+|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP~--Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDPI--GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECCc--cCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 999999999999999999654 599999999999999997665544444332 225778999999999999876
Q ss_pred CCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCC-------------CC----EEEEEeCCCeEEEEEcCCCceeE
Q 001163 572 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT-------------KN----RFLAAGDEFMIKFWDMDNVNLLA 634 (1134)
Q Consensus 572 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~----~l~~~~~dg~i~iwd~~~~~~~~ 634 (1134)
-+.+...+.|.+-.+.+.-..+-||.. ++.++.|+|. .+ .+++|+.|++|-||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 666778899999988898999999998 9999999882 11 56778899999999998888776
Q ss_pred EEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 635 SIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 635 ~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
.+..- ....|..++|+|||..|++++.||+|.++.++..
T Consensus 319 vi~~l-f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNL-FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhh-hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 65432 2457899999999999999999999999988654
No 73
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.5e-27 Score=227.09 Aligned_cols=289 Identities=12% Similarity=0.132 Sum_probs=239.5
Q ss_pred EEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC
Q 001163 350 VMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD 429 (1134)
Q Consensus 350 ~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 429 (1134)
+...+|..+++.+.|+.+|. ||.+++.|.++.||--.+|+.+.+ +.||++.|+|+..+-+
T Consensus 4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~ 63 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWD 63 (327)
T ss_pred cccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCC
Confidence 33456999999999999999 789999999999999999998875 7899999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEe-----CCCeEEEEECC-------CC
Q 001163 430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-----EDRVIKVWDAV-------TG 497 (1134)
Q Consensus 430 ~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-----~d~~i~iwd~~-------~~ 497 (1134)
.++|++|+.|.++++||+++|+++.. + .-..+|..+.|+++|.. ++.+. ..+.|.++|++ ..
T Consensus 64 s~~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn~--~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGNL--ILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred cceeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCcE--EEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 99999999999999999999998773 2 25678999999999983 33332 34578999988 45
Q ss_pred ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceee-ecCCCCCeeEEEECcCCCEEEEEecCCCCC
Q 001163 498 TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-YDAPGHSSTMMAYSADGARLFSCGTNKEGE 576 (1134)
Q Consensus 498 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 576 (1134)
++...+..+...++.+.|.+.+ ++|++|.+||.|..||.+++..... ...|...|+.+.+++|..++++++.|.
T Consensus 138 ep~~kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt--- 212 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDT--- 212 (327)
T ss_pred CceEEecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCc---
Confidence 6678888889999999997655 8999999999999999998755443 466788999999999999999998654
Q ss_pred eEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCC--eEEEEEcCCC------------ceeEEEecCCCC
Q 001163 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF--MIKFWDMDNV------------NLLASIDADGGL 642 (1134)
Q Consensus 577 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~------------~~~~~~~~~~~~ 642 (1134)
+-++||..+-+.++++.... ++++.+++|-...++.|+... .|.-=+.+.| +.+..++ +|.
T Consensus 213 -takl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk--GHF 287 (327)
T KOG0643|consen 213 -TAKLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK--GHF 287 (327)
T ss_pred -cceeeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc--ccc
Confidence 58999999999999998765 899999999988888876322 2222222233 3445555 458
Q ss_pred CCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 643 QASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 643 ~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
++|++++|+|+|...++|+.||.||+......
T Consensus 288 GPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 288 GPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred cCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 89999999999999999999999999876543
No 74
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.9e-28 Score=249.83 Aligned_cols=282 Identities=21% Similarity=0.284 Sum_probs=239.1
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
....|++++|||...+=+|+.+. -.|.||+..+...... +......|.++.|-.||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeEEE
Confidence 45689999999976654454433 4689999887765542 344567999999999999999
Q ss_pred EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEe
Q 001163 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC 514 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 514 (1134)
+|...|.|+|+|.++...++ .+.+|+.+|..+.|+|++.. .+++|+.|+.+++||+.+......+.+|+..|.|.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999977755454 68899999999999998887 799999999999999999988779999999999999
Q ss_pred ccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe-eEEEe
Q 001163 515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA-VKRTY 593 (1134)
Q Consensus 515 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~ 593 (1134)
+++..+ .+++||+.||.|++||.+.......--.|+.+|.++.+-|.|..+++++.+ .+++||+.+|. .+..+
T Consensus 161 ~~~~~~-hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn-----~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPAND-HIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN-----SVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccCCC-eEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC-----eEEEEEecCCceehhhh
Confidence 987554 799999999999999999886555445578899999999999999998754 49999999664 44455
Q ss_pred cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEE
Q 001163 594 HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA 670 (1134)
Q Consensus 594 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~ 670 (1134)
..|++ .|+|+++..++..|++++-|+.+++||+.+.+.+..+.. .++|.+++.+|+++.++.|-.+|.+.+-+
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---~~pvLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---PGPVLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---ccceeeEEecCCCceEEEecccceeeeeh
Confidence 55776 999999999999999999999999999999999988865 45799999999999999999999887753
No 75
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3.5e-27 Score=224.02 Aligned_cols=275 Identities=17% Similarity=0.235 Sum_probs=235.3
Q ss_pred ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC-CCCE
Q 001163 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTL 432 (1134)
Q Consensus 354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~ 432 (1134)
+|...|.+|+|+.+|.+| |+|+.|+++.+|+++....... ....+|.+.|-.++|+| ...+
T Consensus 18 ~~~~~v~Sv~wn~~g~~l-asgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~d~ 79 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKL-ASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHPDL 79 (313)
T ss_pred hhhhcceEEEEcccCcee-eecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCCcc
Confidence 478899999999999965 8999999999999988754332 12679999999999999 6789
Q ss_pred EEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEE
Q 001163 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 512 (1134)
Q Consensus 433 las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 512 (1134)
+++++.|.+|++||++.+++... .... +.=..+.|+|+|. +++.++.|..|.+.|.++.+.+...+ ....+.-
T Consensus 80 ~atas~dk~ir~wd~r~~k~~~~---i~~~-~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne 152 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGKCTAR---IETK-GENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNE 152 (313)
T ss_pred eEEecCCceEEEEEeccCcEEEE---eecc-CcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceeee
Confidence 99999999999999999987763 3322 3334578999999 79999999999999999888877665 4456777
Q ss_pred EeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEE
Q 001163 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT 592 (1134)
Q Consensus 513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 592 (1134)
++|+.++ ++++.....|+|.|-.....++...+..|.....++.|+|+|+++++|+.| ..+.+||+..--+.+.
T Consensus 153 ~~w~~~n--d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsAD----AlvSLWD~~ELiC~R~ 226 (313)
T KOG1407|consen 153 ISWNNSN--DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD----ALVSLWDVDELICERC 226 (313)
T ss_pred eeecCCC--CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeecccc----ceeeccChhHhhhhee
Confidence 8887444 566666667999999999999999999999999999999999999999864 4699999999999999
Q ss_pred ecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECC
Q 001163 593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 663 (1134)
Q Consensus 593 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d 663 (1134)
+..+.- +|+.+.|+.+|++|+++++|..|-|=+.++|..+..++. .++...|+|+|...+||-+++|
T Consensus 227 isRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~---~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 227 ISRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC---EGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec---cCCceeEEecCCCceeeEEecC
Confidence 988876 999999999999999999999999999999999999976 4467899999999999988765
No 76
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2.7e-27 Score=225.41 Aligned_cols=234 Identities=12% Similarity=0.208 Sum_probs=200.8
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 493 (1134)
+.||+.+++.+.++.+|.+|.+++.|.++.||-..+|+.+. ++.||.+.|+|++.+.+.+ +++||+.|.++++||
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLWD 80 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEEE
Confidence 78999999999999999999999999999999998888766 7899999999999999999 899999999999999
Q ss_pred CCCCceeEEecCCCcCEEEEeccccCCccEEEEecC-----CCcEEEEecC-------CCCceeeecCCCCCeeEEEECc
Q 001163 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-----DGKIKAWLYD-------NLGSRVDYDAPGHSSTMMAYSA 561 (1134)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-----dg~i~vwd~~-------~~~~~~~~~~~~~~v~~~~~s~ 561 (1134)
+++|+++..++ ...+|..+.|++.+ ++++.... .+.|.++|++ ..++...+..+...++.+-|.|
T Consensus 81 v~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~ 157 (327)
T KOG0643|consen 81 VETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP 157 (327)
T ss_pred cCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc
Confidence 99999999997 56789999886654 55555433 3679999987 3445666777788999999999
Q ss_pred CCCEEEEEecCCCCCeEEEEEeCCCCeeEE-EecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCC
Q 001163 562 DGARLFSCGTNKEGESYLVEWNESEGAVKR-TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG 640 (1134)
Q Consensus 562 ~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 640 (1134)
-++.|++|..++ .|..||.++|+... .-..|.. .|+.+++++|..++++++.|.+-++||..+-+.+.++..
T Consensus 158 l~~~ii~Ghe~G----~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-- 230 (327)
T KOG0643|consen 158 LGETIIAGHEDG----SISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-- 230 (327)
T ss_pred cCCEEEEecCCC----cEEEEEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEeee--
Confidence 999999997654 59999999985544 4455554 899999999999999999999999999999999988865
Q ss_pred CCCCcceEEEcCCCcEEEEEECC
Q 001163 641 GLQASPCIRFNKEGILLAVSTND 663 (1134)
Q Consensus 641 ~~~~v~~v~~sp~~~~l~~~~~d 663 (1134)
..+|++.+++|....++.|+..
T Consensus 231 -e~PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 231 -ERPVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred -cccccceecccccceEEecCCc
Confidence 4579999999987777776543
No 77
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=1.8e-28 Score=230.73 Aligned_cols=288 Identities=17% Similarity=0.276 Sum_probs=245.3
Q ss_pred eecCCCCCeeEEEEC---cCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeE
Q 001163 546 DYDAPGHSSTMMAYS---ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMI 622 (1134)
Q Consensus 546 ~~~~~~~~v~~~~~s---~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 622 (1134)
.-.+|..+|..++|| |+|-+|++++.|+ . -.+-+-.+|..+.+|.+|.. .|.+.+.+.+....++++.|-+-
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~--~--pmlr~g~tgdwigtfeghkg-avw~~~l~~na~~aasaaadfta 83 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDG--K--PMLRNGDTGDWIGTFEGHKG-AVWSATLNKNATRAASAAADFTA 83 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCC--C--chhccCCCCCcEEeeeccCc-ceeeeecCchhhhhhhhcccchh
Confidence 344566689999997 5888899887644 2 55667788999999999998 89999998888888899999999
Q ss_pred EEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccccc
Q 001163 623 KFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAI 702 (1134)
Q Consensus 623 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1134)
++||.-+|..+..+.. ..-|..++|+.|.++|++|+.+..+||||++........+
T Consensus 84 kvw~a~tgdelhsf~h---khivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~--------------------- 139 (334)
T KOG0278|consen 84 KVWDAVTGDELHSFEH---KHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEI--------------------- 139 (334)
T ss_pred hhhhhhhhhhhhhhhh---hheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhh---------------------
Confidence 9999999999998853 4578999999999999999999999999987652222111
Q ss_pred ccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEE
Q 001163 703 GTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRL 782 (1134)
Q Consensus 703 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l 782 (1134)
.+|.+.|..+
T Consensus 140 ----------------------------------------------------------------------~ghtg~Ir~v 149 (334)
T KOG0278|consen 140 ----------------------------------------------------------------------SGHTGGIRTV 149 (334)
T ss_pred ----------------------------------------------------------------------cCCCCcceeE
Confidence 2378889999
Q ss_pred EEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee
Q 001163 783 IYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS 862 (1134)
Q Consensus 783 ~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s 862 (1134)
.|....+.+++.+.|++||+||. .+|..+.... ...+|+++.+++||++|.++.
T Consensus 150 ~wc~eD~~iLSSadd~tVRLWD~----------------------rTgt~v~sL~----~~s~VtSlEvs~dG~ilTia~ 203 (334)
T KOG0278|consen 150 LWCHEDKCILSSADDKTVRLWDH----------------------RTGTEVQSLE----FNSPVTSLEVSQDGRILTIAY 203 (334)
T ss_pred EEeccCceEEeeccCCceEEEEe----------------------ccCcEEEEEe----cCCCCcceeeccCCCEEEEec
Confidence 99999999999999999999864 4444433321 467899999999999999999
Q ss_pred CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEec-cCccCceEEEEEeeCCCE
Q 001163 863 GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL-KGHQKRITGLAFSNTLNV 941 (1134)
Q Consensus 863 dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l-~~h~~~V~~l~~s~d~~~ 941 (1134)
.+.|.+||..+...+..++ -...|.+...+| +..++++|++|+.++.||..+|+.+..+ ++|-++|.|+.|+|||..
T Consensus 204 gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~ 281 (334)
T KOG0278|consen 204 GSSVKFWDAKSFGLLKSYK-MPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGEL 281 (334)
T ss_pred CceeEEeccccccceeecc-CccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCce
Confidence 9999999999999998887 556799999999 7889999999999999999999999886 899999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCc
Q 001163 942 LVSSGADSQLCVWSTDGWE 960 (1134)
Q Consensus 942 l~s~s~Dg~i~iwd~~~~~ 960 (1134)
.++||.||+|++|....++
T Consensus 282 yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 282 YASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred eeccCCCceEEEEEecCCC
Confidence 9999999999999987655
No 78
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.1e-27 Score=228.46 Aligned_cols=273 Identities=18% Similarity=0.269 Sum_probs=218.8
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCc-cceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSR-ERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 433 (1134)
..+.|.+|+|||....+++.||-||+|++|+++.. .... .....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 46789999999977778889999999999999874 3221 1256799999999999999999
Q ss_pred EEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEE
Q 001163 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513 (1134)
Q Consensus 434 as~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 513 (1134)
++|+.|+.+++||+.+++.. .+..|.++|.++.|-+......|+|||.|++|+.||++...++.++. -.+.++++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999999644 37789999999999887665579999999999999999999998886 45677777
Q ss_pred eccccCCccEEEEecCCCcEEEEecCCCCceeeec--CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC--ee
Q 001163 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD--APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG--AV 589 (1134)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~ 589 (1134)
..- . .+++.+..++.|.+|++++........ .-...+++++..+|....+.|+..+ . +.+..+..+ +.
T Consensus 163 Dv~--~--pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG--r--v~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DVL--Y--PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG--R--VAIQYIDDPNPKD 234 (347)
T ss_pred hcc--C--ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc--e--EEEEecCCCCccC
Confidence 542 2 578889999999999997655444322 1233788999988888778887633 3 555555444 55
Q ss_pred EEEecCCCC--------CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEE
Q 001163 590 KRTYHGLGK--------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 660 (1134)
Q Consensus 590 ~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~ 660 (1134)
-.+|+.|.. ..|++++|+|....|+++|.||++.+||-+....+...+.+ ..+|+|++|+.+|.++|-+
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH--PQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC--CCccceeEecCCCCEEEEE
Confidence 556666652 24677999999999999999999999999887777776655 6689999999999988765
No 79
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.4e-26 Score=220.09 Aligned_cols=277 Identities=16% Similarity=0.258 Sum_probs=232.8
Q ss_pred eeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE--EecCCCcCEEEEeccccCCccEEEEecCCCcEEE
Q 001163 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY--IFEGHESPVYSICPHHKENIQFIFSTATDGKIKA 535 (1134)
Q Consensus 458 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~v 535 (1134)
.+.+|.+.|.+++|+.+|. .|++|+.|+++.+|++...+.+. ..++|.+.|-.++|++... +.+++++.|.+|++
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRI 91 (313)
T ss_pred HhhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEE
Confidence 4678999999999999999 79999999999999998886655 3578999999999988665 78999999999999
Q ss_pred EecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEE
Q 001163 536 WLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLA 615 (1134)
Q Consensus 536 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 615 (1134)
||++..++..........+ .+.|+|+|.+++.+..+. .|...|.++.+.....+... .+.-++|+.+++.++.
T Consensus 92 wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD----~it~id~r~~~~~~~~~~~~--e~ne~~w~~~nd~Ffl 164 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDD----RITFIDARTYKIVNEEQFKF--EVNEISWNNSNDLFFL 164 (313)
T ss_pred EEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcc----cEEEEEecccceeehhcccc--eeeeeeecCCCCEEEE
Confidence 9999998888776655544 578999999999986543 48999999888777665543 5677889988888888
Q ss_pred EeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhh
Q 001163 616 AGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAA 695 (1134)
Q Consensus 616 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1134)
....|.|.|..+..-+++..+..| .....|+.|+|+|+++|+|+.|-.+.+||++.. .+.+.+
T Consensus 165 t~GlG~v~ILsypsLkpv~si~AH--~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~i-------------- 227 (313)
T KOG1407|consen 165 TNGLGCVEILSYPSLKPVQSIKAH--PSNCICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCI-------------- 227 (313)
T ss_pred ecCCceEEEEeccccccccccccC--CcceEEEEECCCCceEeeccccceeeccChhHh-hhheee--------------
Confidence 888899999999999999999977 567889999999999999999999999997643 111100
Q ss_pred hhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccc
Q 001163 696 IVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLT 775 (1134)
Q Consensus 696 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 775 (1134)
T Consensus 228 -------------------------------------------------------------------------------- 227 (313)
T KOG1407|consen 228 -------------------------------------------------------------------------------- 227 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCC
Q 001163 776 AMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND 855 (1134)
Q Consensus 776 ~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg 855 (1134)
+. +..+|+.+.||.||
T Consensus 228 --------------------------------------------------------------sR--ldwpVRTlSFS~dg 243 (313)
T KOG1407|consen 228 --------------------------------------------------------------SR--LDWPVRTLSFSHDG 243 (313)
T ss_pred --------------------------------------------------------------cc--ccCceEEEEeccCc
Confidence 00 56788889999999
Q ss_pred CeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC
Q 001163 856 SYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDS 907 (1134)
Q Consensus 856 ~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg 907 (1134)
++||+++ |..|-|=++++|..+..+. +.++...++|+| ...+||.++.|.
T Consensus 244 ~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~ddk 294 (313)
T KOG1407|consen 244 RMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDDK 294 (313)
T ss_pred ceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecCC
Confidence 9999998 7888888999999998887 788999999999 888999888763
No 80
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=4.2e-27 Score=267.40 Aligned_cols=306 Identities=18% Similarity=0.241 Sum_probs=240.4
Q ss_pred ccccEEEEEEecCCceeeeec--cCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEc
Q 001163 775 TAMRVSRLIYTNSGLAILALA--SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALS 852 (1134)
Q Consensus 775 ~~~~i~~l~~spdg~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s 852 (1134)
+...|.++..+|||..+++|+ .|+.++||+.+.--. +...++..-.+.+.. .. .|.+.|.|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~~-m~--~h~~sv~CVR~S 78 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLCT-MD--DHDGSVNCVRFS 78 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhhee-ec--cccCceeEEEEC
Confidence 345689999999999999999 799999998763210 011122211111111 22 389999999999
Q ss_pred CCCCeEEEee-CCeEEEEEcc------------------CCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 001163 853 KNDSYVMSAS-GGKISLFNMM------------------TFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYN 913 (1134)
Q Consensus 853 ~dg~~la~~s-dg~i~lwd~~------------------~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd 913 (1134)
+||++||+|+ |..|.||+.. .++++..+.+|...|..++|+| ++.+||+++.|++|.||+
T Consensus 79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn 157 (942)
T KOG0973|consen 79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWN 157 (942)
T ss_pred CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEc
Confidence 9999999999 6779999875 2347788999999999999999 999999999999999999
Q ss_pred cccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEE
Q 001163 914 VRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL 993 (1134)
Q Consensus 914 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~ 993 (1134)
..+.+.+.++++|.+.|..+.|.|-|+++||-+.|++|+||++..+...+ .+..+-.+.........+.|||||++|+
T Consensus 158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCeec
Confidence 99999999999999999999999999999999999999999977754332 2222333333335678999999999999
Q ss_pred E--E---eeceEEEEeCCCcccceeeccCCCccCEEEEEEcc--------C-----CC----EEEEEecCCcEEEeecCC
Q 001163 994 A--V---HETQIAIYEAPKLECLKQFVPREASGPITHATYSC--------D-----SQ----SIYVAFEEGSVGVLTAST 1051 (1134)
Q Consensus 994 ~--~---~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~--------d-----g~----~l~s~s~Dg~i~vwd~~~ 1051 (1134)
+ + .-..+.|.+-.+.+.-..+. +|.+++.+++|+| + .. .+|+|+.|++|.||....
T Consensus 236 s~nA~n~~~~~~~IieR~tWk~~~~Lv--GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 236 SPNAVNGGKSTIAIIERGTWKVDKDLV--GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred chhhccCCcceeEEEecCCceeeeeee--cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 9 3 23478999988877777777 9999999999988 1 11 578999999999999987
Q ss_pred CcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCCCC
Q 001163 1052 LRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGR 1107 (1134)
Q Consensus 1052 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~~~ 1107 (1134)
.+++..+.-- -...| ++++|+| ||-.|+++|.||+|.+..+++.|..
T Consensus 314 ~RPl~vi~~l------f~~SI--~DmsWsp-dG~~LfacS~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 314 PRPLFVIHNL------FNKSI--VDMSWSP-DGFSLFACSLDGTVALIHFEEKELG 360 (942)
T ss_pred CCchhhhhhh------hcCce--eeeeEcC-CCCeEEEEecCCeEEEEEcchHHhC
Confidence 7776443311 11233 3559999 7999999999999999999876643
No 81
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=6.8e-26 Score=257.32 Aligned_cols=286 Identities=12% Similarity=0.106 Sum_probs=219.7
Q ss_pred CCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCc-cccccccccCCCCEEEEEEcC-CCCEEE
Q 001163 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSM-PLQASLSSDYTASVNRVMWSP-DGTLFG 434 (1134)
Q Consensus 357 ~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~l~~sp-d~~~la 434 (1134)
..|....+++|+..+ ++++.+..+..|+...+..+. .....+. ......+.+|.+.|.+++|+| ++++||
T Consensus 21 ~~i~~~~~~~d~~~~-~~~n~~~~a~~w~~~gg~~v~-------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~La 92 (493)
T PTZ00421 21 LNVTPSTALWDCSNT-IACNDRFIAVPWQQLGSTAVL-------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLF 92 (493)
T ss_pred eccccccccCCCCCc-EeECCceEEEEEecCCceEEe-------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEE
Confidence 345566677776644 566777777888876553221 1111111 111123689999999999999 899999
Q ss_pred EEeCCCEEEEEEccCCcee----eeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCE
Q 001163 435 VAYSKHIVHLYTYHGGDEL----RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV 510 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~----~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v 510 (1134)
+|+.|++|+|||+.++... .....+.+|...|.+++|+|++.. +|++++.|++|+|||+.+++.+..+.+|...|
T Consensus 93 SgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V 171 (493)
T PTZ00421 93 TASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQI 171 (493)
T ss_pred EEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCce
Confidence 9999999999999865321 223468899999999999998644 79999999999999999999999999999999
Q ss_pred EEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCC-eeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe-
Q 001163 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHS-STMMAYSADGARLFSCGTNKEGESYLVEWNESEGA- 588 (1134)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~- 588 (1134)
.+++|++ ++.+|++++.|+.|++||++++.....+..|.+. ...+.|.+++..+++++.++..++.|++||+++..
T Consensus 172 ~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 172 TSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 9999975 4589999999999999999988877777776653 45678999998998887665567789999998754
Q ss_pred eEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCC
Q 001163 589 VKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654 (1134)
Q Consensus 589 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 654 (1134)
+......+....+....|+++++.+++++ .|+.|++||+.+++++...... ....+..++|.|..
T Consensus 250 p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 250 PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-SVEPHKGLCMMPKW 315 (493)
T ss_pred ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-CCCCCcceEecccc
Confidence 44444444443566678999999999988 5999999999999887765432 34467888898853
No 82
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.3e-27 Score=222.45 Aligned_cols=284 Identities=17% Similarity=0.264 Sum_probs=228.4
Q ss_pred eEEEEcC--CCCeEEEEEe-----CCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC-CCC
Q 001163 360 KSMDFHP--VQQILLVVGT-----NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGT 431 (1134)
Q Consensus 360 ~~v~fsp--~g~~lla~gs-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~ 431 (1134)
.++.||| +++..+|++. ..|.+.|-++..++-+.. +. -..-.+.+..++||+ ..+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~---------------s~d~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQ---------------SYDTEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EE---------------eeecccceeEeeecCCCcc
Confidence 4778888 4553344442 357899999864443332 11 122457899999999 467
Q ss_pred EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEE
Q 001163 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 511 (1134)
Q Consensus 432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~ 511 (1134)
.+++++.||+++|||+... -.++..++.|...|.++.|++-.++ .++++|.|++|++||...++-+++|.||...|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 8889999999999996433 3355578899999999999997776 577779999999999999999999999999999
Q ss_pred EEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCC-CEEEEEecCCCCCeEEEEEeCCCC-ee
Q 001163 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG-ARLFSCGTNKEGESYLVEWNESEG-AV 589 (1134)
Q Consensus 512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~-~~ 589 (1134)
...|+|... ++++++|.|+++++||++..+....+..|..++.++.|+.-. +.+++++. +..|+.||++.- .+
T Consensus 152 ~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 152 QAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRTP 226 (311)
T ss_pred EEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhcccc
Confidence 999998654 799999999999999999988888888899999999999754 55666654 456999999875 56
Q ss_pred EEEecCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCC-ceeEEEecCCCCCCcceEEEcC-CCcEEEEEECCCcE
Q 001163 590 KRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNV-NLLASIDADGGLQASPCIRFNK-EGILLAVSTNDNGI 666 (1134)
Q Consensus 590 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~~dg~i 666 (1134)
+..+.+|.- .|+.+.|+|.. ..|++++.|-+++|||...+ ..+.+...| ..-+..+.|++ ++.++|+.+-|+.+
T Consensus 227 l~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 227 LFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred ceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccccce
Confidence 778877776 89999999976 67888999999999999844 445555544 56788899998 67899999999999
Q ss_pred EEEEc
Q 001163 667 KILAN 671 (1134)
Q Consensus 667 ~iw~~ 671 (1134)
+||+.
T Consensus 304 ~Vw~p 308 (311)
T KOG0277|consen 304 YVWNP 308 (311)
T ss_pred eeecc
Confidence 99984
No 83
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.4e-27 Score=261.53 Aligned_cols=249 Identities=16% Similarity=0.271 Sum_probs=208.8
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCc----------------------------e--e------------
Q 001163 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD----------------------------E--L------------ 453 (1134)
Q Consensus 416 ~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~----------------------------~--~------------ 453 (1134)
.|.+.|+++.||+||+|||+||.|+.|+||.+...+ . .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 899999999999999999999999999999986600 0 0
Q ss_pred ---------------eeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEecccc
Q 001163 454 ---------------RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHK 518 (1134)
Q Consensus 454 ---------------~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~ 518 (1134)
+++..+.||.+.|..+.||.++ +|+|+|.|++|++|++...+|+..|. |...|+|++|+|.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPv 420 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPV 420 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEeccc
Confidence 0223467999999999999876 69999999999999999999999997 9999999999997
Q ss_pred CCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCC--
Q 001163 519 ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL-- 596 (1134)
Q Consensus 519 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-- 596 (1134)
.| +++++|+.|+.||||++...+....... ..-|++++|.|||+..++|+.+| ..++|+....+....+.-+
T Consensus 421 DD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G----~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 421 DD-RYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNG----YCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred CC-CcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEecc----EEEEEEccCCeEEEeeeEeec
Confidence 66 8999999999999999986554444333 36899999999999999998755 5999999887766554322
Q ss_pred -----CCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEE
Q 001163 597 -----GKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA 670 (1134)
Q Consensus 597 -----~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~ 670 (1134)
....|+.+.|.|.. ..+++.+.|..|+|+|.++.+++..+.+......-....|+.||++|+++++|..|++|+
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWK 574 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence 11269999998765 458888999999999999999999998765555556789999999999999999999999
Q ss_pred ccCC
Q 001163 671 NADG 674 (1134)
Q Consensus 671 ~~~~ 674 (1134)
....
T Consensus 575 ~~~~ 578 (712)
T KOG0283|consen 575 NDSF 578 (712)
T ss_pred CCCC
Confidence 8543
No 84
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.9e-27 Score=259.13 Aligned_cols=274 Identities=17% Similarity=0.250 Sum_probs=213.9
Q ss_pred cccccEEEEEEecCCceeeeeccCCeEEeeecCCCCC---------------Cccc----------c----------ccc
Q 001163 774 LTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNER---------------NSTG----------K----------ATT 818 (1134)
Q Consensus 774 ~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~---------------~~~~----------~----------~~~ 818 (1134)
.|.+.|.++.||+||++||+++.|+.|+||.+...+. ..++ . ...
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4999999999999999999999999999999876200 0000 0 000
Q ss_pred CCCCcccCCCCCcc---cccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcC
Q 001163 819 NQAPQLWQPPSGIL---MTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHP 894 (1134)
Q Consensus 819 ~~~~~~~d~~~~~~---~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp 894 (1134)
... .+.+...... ....+ .||...|..+.||.++ +|++++ |.+|+||++...+|+..|. |..-|+|++|+|
T Consensus 345 s~~-~~~p~~~f~f~ekP~~ef--~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP 419 (712)
T KOG0283|consen 345 SPC-VLLPLKAFVFSEKPFCEF--KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP 419 (712)
T ss_pred Ccc-ccCCCccccccccchhhh--hccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence 001 0111111100 01112 3599999999999885 555666 9999999999999999998 999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCC
Q 001163 895 QDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRT 974 (1134)
Q Consensus 895 ~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 974 (1134)
-|.+|+++|+-||.||||++...+++.-...+ .-|++++|+|||+..+.|+.+|.+++|+....+......+....+..
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred cCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 99999999999999999999988877665555 77999999999999999999999999999887765555555554444
Q ss_pred CCCCCceEEEEcCCCC--EEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCC
Q 001163 975 ASALADTRVQFHLDQT--HLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTL 1052 (1134)
Q Consensus 975 ~~~~~v~~l~fs~dg~--~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~ 1052 (1134)
.....|+.+.|.|... .|+++.|..|+|||..+.+.+..+....-...-....|+.||++|+++++|..|+||+++.-
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 4445699999987544 78889999999999988888888873222445567889999999999999999999998554
Q ss_pred c
Q 001163 1053 R 1053 (1134)
Q Consensus 1053 ~ 1053 (1134)
.
T Consensus 579 ~ 579 (712)
T KOG0283|consen 579 N 579 (712)
T ss_pred c
Confidence 3
No 85
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2e-25 Score=219.63 Aligned_cols=282 Identities=15% Similarity=0.256 Sum_probs=232.3
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
....|+++.|+++|.++ ++++.|.+++|||..+++.+.+ +..+.-.|..++|......++
T Consensus 13 ~~~~i~sl~fs~~G~~l-itss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLL-ITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCCceeEEEecCCCCEE-EEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceEE
Confidence 36789999999999965 5688899999999999988764 345667889999998888887
Q ss_pred EEeC--CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEE
Q 001163 435 VAYS--KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 512 (1134)
Q Consensus 435 s~s~--dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 512 (1134)
.++. |.+|+.-++.+.+.++ -+.||...|++++.+|-+. .++|++.|++|++||++..++...+.....+|
T Consensus 73 ~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi-- 145 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI-- 145 (311)
T ss_pred EccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcc--
Confidence 7776 8899999999999887 6899999999999999987 79999999999999999888887776555555
Q ss_pred EeccccCCccEEEEecCCCcEEEEecCCCC--ceeeecCC---CCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC
Q 001163 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLG--SRVDYDAP---GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (1134)
Q Consensus 513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 587 (1134)
++| ++.|-++|++.....|++||++... +-..+... ..+.+.+.|||||+.++.+.. ...+++.|.-+|
T Consensus 146 ~Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G 219 (311)
T KOG1446|consen 146 AAF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDG 219 (311)
T ss_pred eeE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCC
Confidence 355 5566788888887799999998652 23333332 457889999999999998864 446999999999
Q ss_pred eeEEEecCCCCCc--eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCc
Q 001163 588 AVKRTYHGLGKRS--VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNG 665 (1134)
Q Consensus 588 ~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~ 665 (1134)
..+.++.++.... -...+|.||++++++|+.||+|.+|+++++..+..+.+. +...+.|+.|+|.-.++++++ ..
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~--s~ 296 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS--SN 296 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--ce
Confidence 9999988876532 246789999999999999999999999999999999874 456889999999877777664 57
Q ss_pred EEEEEcc
Q 001163 666 IKILANA 672 (1134)
Q Consensus 666 i~iw~~~ 672 (1134)
+.+|-..
T Consensus 297 l~fw~p~ 303 (311)
T KOG1446|consen 297 LVFWLPD 303 (311)
T ss_pred EEEEecc
Confidence 7788654
No 86
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.7e-26 Score=261.83 Aligned_cols=277 Identities=17% Similarity=0.284 Sum_probs=244.4
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
+...|.+..|. ++ .+.+|+.|.+|++||..++..+.. -+.||.+.|++++|..-+.+|+
T Consensus 207 ~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~lv 265 (537)
T KOG0274|consen 207 DDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKLV 265 (537)
T ss_pred Ccchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEEE
Confidence 67889999999 44 368999999999999999987763 1689999999999998899999
Q ss_pred EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEe
Q 001163 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC 514 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 514 (1134)
+|+.|.+++|||+.+|++.. .+.+|...|.++...+ . ++++|+.|.+|++|++.++.++..+.+|.++|.++.
T Consensus 266 sgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~--~--~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 266 SGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDP--F--LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred EEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccC--c--eEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence 99999999999999999877 7889999999998753 3 689999999999999999999999999999999998
Q ss_pred ccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC-eeEEEe
Q 001163 515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG-AVKRTY 593 (1134)
Q Consensus 515 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~ 593 (1134)
.+ +.++++|+.|++|++||+.+.++...+.+|...|.++.+.+. ..+++++.|+ .|++||+.+. +++.++
T Consensus 339 ~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~----~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 339 LD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDT----TIKVWDLRTKRKCIHTL 409 (537)
T ss_pred ec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeecc----ceEeecCCchhhhhhhh
Confidence 74 379999999999999999999999999999999999988766 8899998764 5999999999 999999
Q ss_pred cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163 594 HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (1134)
Q Consensus 594 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 673 (1134)
.+|.. .+..+. ..+++|++++.|++|++||..+++++..+... +...|..+++. ...+++++.||.+++||+.+
T Consensus 410 ~~h~~-~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 410 QGHTS-LVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred cCCcc-cccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 99886 554443 45789999999999999999999999999874 34567777665 46888999999999999998
Q ss_pred C
Q 001163 674 G 674 (1134)
Q Consensus 674 ~ 674 (1134)
+
T Consensus 484 ~ 484 (537)
T KOG0274|consen 484 G 484 (537)
T ss_pred C
Confidence 8
No 87
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=2.7e-26 Score=229.64 Aligned_cols=308 Identities=16% Similarity=0.256 Sum_probs=237.6
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCC-ceEEEEEeCCCeEEEEE
Q 001163 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK-QLSVVTCGEDRVIKVWD 493 (1134)
Q Consensus 415 ~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~-~~~l~s~s~d~~i~iwd 493 (1134)
.-|.+.|.++... ++.+++|+.||.++|||.... ... .+.||.++|.+++|.-.+. ...++++|.|.++++|-
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk-~~~---~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~ 175 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK-SIK---TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK 175 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCCeeEEEecCCc-eEE---EEecCCcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence 3589999999988 889999999999999998754 333 6889999999988864333 12599999999999999
Q ss_pred CCCCcee----EEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEE
Q 001163 494 AVTGTKQ----YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC 569 (1134)
Q Consensus 494 ~~~~~~~----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 569 (1134)
++.++.. +.-+||...|.++... ++|..+++|+.|.+|++|+... .....++.... -+.++.
T Consensus 176 ~~~~~~~~~~~~~~~GHk~~V~sVsv~--~sgtr~~SgS~D~~lkiWs~~~-~~~~~~E~~s~-------~rrk~~---- 241 (423)
T KOG0313|consen 176 WNVGENKVKALKVCRGHKRSVDSVSVD--SSGTRFCSGSWDTMLKIWSVET-DEEDELESSSN-------RRRKKQ---- 241 (423)
T ss_pred ecCchhhhhHHhHhcccccceeEEEec--CCCCeEEeecccceeeecccCC-Cccccccccch-------hhhhhh----
Confidence 8877543 3445999999999874 5568999999999999998332 11111111000 011100
Q ss_pred ecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEE
Q 001163 570 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR 649 (1134)
Q Consensus 570 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 649 (1134)
-+-=...++.++.++.+|.+ +|.++.|++ ...+++++-|.+|+.||+.++..+..+.. ...++|+.
T Consensus 242 ---------~~~~~~~~r~P~vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~---~ksl~~i~ 307 (423)
T KOG0313|consen 242 ---------KREKEGGTRTPLVTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT---NKSLNCIS 307 (423)
T ss_pred ---------hhhhcccccCceEEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec---CcceeEee
Confidence 00111234577888999998 999999988 67899999999999999999999988865 44789999
Q ss_pred EcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCC
Q 001163 650 FNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM 729 (1134)
Q Consensus 650 ~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 729 (1134)
.+|..++|++|+.|..+++||..++..
T Consensus 308 ~~~~~~Ll~~gssdr~irl~DPR~~~g----------------------------------------------------- 334 (423)
T KOG0313|consen 308 YSPLSKLLASGSSDRHIRLWDPRTGDG----------------------------------------------------- 334 (423)
T ss_pred cccccceeeecCCCCceeecCCCCCCC-----------------------------------------------------
Confidence 999999999999999999999766510
Q ss_pred CCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCC
Q 001163 730 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNE 809 (1134)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~ 809 (1134)
.+....
T Consensus 335 ------------------------------------------------s~v~~s-------------------------- 340 (423)
T KOG0313|consen 335 ------------------------------------------------SVVSQS-------------------------- 340 (423)
T ss_pred ------------------------------------------------ceeEEe--------------------------
Confidence 000000
Q ss_pred CCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCC-eEEEee-CCeEEEEEccCCe-EEEEecCCCCC
Q 001163 810 RNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFK-TMTTFMPPPPA 886 (1134)
Q Consensus 810 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~la~~s-dg~i~lwd~~~~~-~~~~~~~~~~~ 886 (1134)
+. +|.+.|.++.++|... .|++++ |+++++||+++.+ ++..+.+|...
T Consensus 341 ---------------------------~~--gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK 391 (423)
T KOG0313|consen 341 ---------------------------LI--GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK 391 (423)
T ss_pred ---------------------------ee--cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce
Confidence 11 2777888888888665 566777 9999999998877 89999999999
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEEc
Q 001163 887 ATFLAFHPQDNNIIAIGMEDSSIQIYNV 914 (1134)
Q Consensus 887 v~~l~~sp~~~~~la~g~~dg~i~iwd~ 914 (1134)
|.++.|. ++.++++|+.|.+|+|+.-
T Consensus 392 vl~vdW~--~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 392 VLSVDWN--EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred EEEEecc--CCceEEeccCcceEEEecc
Confidence 9999998 4679999999999999864
No 88
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=1.1e-26 Score=225.48 Aligned_cols=294 Identities=16% Similarity=0.267 Sum_probs=234.4
Q ss_pred cccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccC------------Cc---eeeeeeeeecCCCCEEEEEEecCCC
Q 001163 412 SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHG------------GD---ELRNHLEIEAHVGSVNDLAFSYPNK 476 (1134)
Q Consensus 412 ~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~------------~~---~~~~~~~l~~h~~~V~~v~~s~~~~ 476 (1134)
..+..|.+++.+.+|||||.++|+|+.|..|+|.|++. |. .-..+.+|..|...|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 35788999999999999999999999999999999871 11 0012336788999999999999998
Q ss_pred ceEEEEEeCCCeEEEEECCCCceeEEec--CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec---CCC
Q 001163 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFE--GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD---APG 551 (1134)
Q Consensus 477 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~ 551 (1134)
.|++|+.|++|+++|.......+.++ ....+|.++.|+|.+ .+|+.|..-.++++||+.+.++-..-. .|.
T Consensus 186 --ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG--efllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 186 --ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG--EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred --eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC--ceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 89999999999999987654333222 256789999998765 899999999999999999877765533 355
Q ss_pred CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEec-CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 001163 552 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH-GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV 630 (1134)
Q Consensus 552 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 630 (1134)
..|+++.+++.|+..++++.|+ .|++||--+++++.++. .|.+..|.+..|..+++++++.|.|..+++|.+.++
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG----~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDG----AIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred cceeEEEecCCccEEEEeccCC----cEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 6899999999999999998755 49999999999999885 455667999999999999999999999999999999
Q ss_pred ceeEEEecCCCCCC---cceEEEcCCCcEEEEEEC-CCcEEEEEccCCceeEEEeccCcccccccchhhhhccccccccc
Q 001163 631 NLLASIDADGGLQA---SPCIRFNKEGILLAVSTN-DNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFG 706 (1134)
Q Consensus 631 ~~~~~~~~~~~~~~---v~~v~~sp~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (1134)
+++..+.+.+..+. -+...|+....+++.-.+ .+.+.-||..+.
T Consensus 338 R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta-------------------------------- 385 (430)
T KOG0640|consen 338 RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA-------------------------------- 385 (430)
T ss_pred ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch--------------------------------
Confidence 99999876533222 234556666666554432 456666776554
Q ss_pred ccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEec
Q 001163 707 SANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTN 786 (1134)
Q Consensus 707 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 786 (1134)
..+.+|. .+|.+.+..+.-||
T Consensus 386 ------------------------------------------dr~~l~s-----------------lgHn~a~R~i~HSP 406 (430)
T KOG0640|consen 386 ------------------------------------------DRVALLS-----------------LGHNGAVRWIVHSP 406 (430)
T ss_pred ------------------------------------------hhhhhcc-----------------cCCCCCceEEEeCC
Confidence 1222232 24899999999999
Q ss_pred CCceeeeeccCCeEEeee
Q 001163 787 SGLAILALASNAVHKLWK 804 (1134)
Q Consensus 787 dg~~l~~~~~dg~i~vw~ 804 (1134)
.+..+++++.|-.+++|-
T Consensus 407 ~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 407 VEPAFMTCSDDFRARFWY 424 (430)
T ss_pred CCCceeeecccceeeeee
Confidence 999999999999999994
No 89
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2e-26 Score=238.55 Aligned_cols=283 Identities=16% Similarity=0.248 Sum_probs=232.8
Q ss_pred ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163 775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 854 (1134)
Q Consensus 775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d 854 (1134)
..+.|.+++|+|...+=++....-.+.+|+.... ..... +.. ....+.++.|..|
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~----------------------~~~k~-~sr--Fk~~v~s~~fR~D 79 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTR----------------------SVRKT-FSR--FKDVVYSVDFRSD 79 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchh----------------------hhhhh-HHh--hccceeEEEeecC
Confidence 5678999999997766555555566777754321 11111 111 5678999999999
Q ss_pred CCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEE
Q 001163 855 DSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGL 933 (1134)
Q Consensus 855 g~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l 933 (1134)
|+++|+|+ .|.|+|||+.+...++.+.+|..++..+.|+|++++++++|++|+.+++||+.++.....+.+|++.|.+.
T Consensus 80 G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 80 GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 99999999 79999999888778889999999999999999999999999999999999999998877999999999999
Q ss_pred EEeeCC-CEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccce
Q 001163 934 AFSNTL-NVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLK 1012 (1134)
Q Consensus 934 ~~s~d~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~ 1012 (1134)
+|+|.. .+++|||.||+|++||+.... ........+ .+|..+.|-|.|..++++....|+|||+.+|....
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLL 231 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceeh
Confidence 999864 589999999999999988742 234444444 35899999999999999999999999999665543
Q ss_pred eeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEec
Q 001163 1013 QFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLT 1092 (1134)
Q Consensus 1013 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~ 1092 (1134)
.... .|...|+|+++..|++.|++++-|+.|++||+.+.+.+..+..+ +.|.+++++ | |++.++.|..
T Consensus 232 ~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~--------~pvLsiavs--~-dd~t~viGms 299 (487)
T KOG0310|consen 232 TSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP--------GPVLSIAVS--P-DDQTVVIGMS 299 (487)
T ss_pred hhhh-cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc--------cceeeEEec--C-CCceEEEecc
Confidence 3332 59999999999999999999999999999999999998877733 457777554 7 6789999999
Q ss_pred CCcEEEEeCC
Q 001163 1093 DGGVYIIEPL 1102 (1134)
Q Consensus 1093 Dg~v~vW~~~ 1102 (1134)
||.+.+=+..
T Consensus 300 nGlv~~rr~~ 309 (487)
T KOG0310|consen 300 NGLVSIRRRE 309 (487)
T ss_pred cceeeeehhh
Confidence 9988777543
No 90
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.8e-26 Score=246.84 Aligned_cols=277 Identities=18% Similarity=0.267 Sum_probs=237.1
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCC
Q 001163 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 440 (1134)
Q Consensus 361 ~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg 440 (1134)
-++||..+ .+|+|. ...|++|+..+++.... ..-++..|+++.|+++|.+||+|..+|
T Consensus 182 lldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~~g 239 (484)
T KOG0305|consen 182 LLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTSDG 239 (484)
T ss_pred HhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeecCC
Confidence 56788555 455654 34699999999985542 222388999999999999999999999
Q ss_pred EEEEEEccCCceeeeeeeeec-CCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEE-ecCCCcCEEEEecccc
Q 001163 441 IVHLYTYHGGDELRNHLEIEA-HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI-FEGHESPVYSICPHHK 518 (1134)
Q Consensus 441 ~v~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~ 518 (1134)
.|.|||..+.+.++ .+.+ |...|.+++|. +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|++
T Consensus 240 ~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~- 311 (484)
T KOG0305|consen 240 TVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP- 311 (484)
T ss_pred eEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-
Confidence 99999999877665 5777 99999999998 44 689999999999999998877665 889999999999965
Q ss_pred CCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcC-CCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCC
Q 001163 519 ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD-GARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG 597 (1134)
Q Consensus 519 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 597 (1134)
++.++++|+.|+.+.|||.........+..|...|.+++|+|- ...||+|+. ..+.+|++||..+++.+.......
T Consensus 312 -d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdtgs 388 (484)
T KOG0305|consen 312 -DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDTGS 388 (484)
T ss_pred -CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEecccccCC
Confidence 5589999999999999999888899999999999999999995 456777764 557889999999999988776654
Q ss_pred CCceEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 598 KRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 598 ~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
.|..+.|++..+.|+++. .++.|.||++.+.+.+..+.+| ...|..++++|||..+++|+.|.++++|++-+.
T Consensus 389 --QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH--~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 389 --QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH--TSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred --ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC--cceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 799999999998777754 6779999999999999988866 778999999999999999999999999998653
No 91
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.6e-25 Score=216.48 Aligned_cols=289 Identities=15% Similarity=0.190 Sum_probs=229.7
Q ss_pred ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163 775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 854 (1134)
Q Consensus 775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d 854 (1134)
....|.++.|+++|..+++++.|-++++|+... |..+.. +.. +...+..++|...
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~----------------------g~~~~t-i~s--kkyG~~~~~Fth~ 67 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS----------------------GKQVKT-INS--KKYGVDLACFTHH 67 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCC----------------------CceeeE-eec--ccccccEEEEecC
Confidence 467899999999999999999999999996553 332222 111 5567888888877
Q ss_pred CCeEEEee---CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceE
Q 001163 855 DSYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRIT 931 (1134)
Q Consensus 855 g~~la~~s---dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~ 931 (1134)
...++.++ |.+|+..++.+.+.++-+.||...|+.++.+| .+..+++++.|++|++||++..++...+..-..+
T Consensus 68 ~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p-- 144 (311)
T KOG1446|consen 68 SNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP-- 144 (311)
T ss_pred CceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCc--
Confidence 77666665 67899999999999999999999999999999 7789999999999999999987776665543333
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCccc
Q 001163 932 GLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLEC 1010 (1134)
Q Consensus 932 ~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~ 1010 (1134)
.+||.|+|-++|++.....|++||+..-.........+..+.. ...+.+.|||||++++.+ ..+.+++.|.-+|..
T Consensus 145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~---~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~ 221 (311)
T KOG1446|consen 145 IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDE---AEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV 221 (311)
T ss_pred ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCc---cceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE
Confidence 4789999999999988889999999887666655555554333 468999999999999985 668899999999998
Q ss_pred ceeeccCCCcc-CEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEE
Q 001163 1011 LKQFVPREASG-PITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFAL 1089 (1134)
Q Consensus 1011 ~~~~~~~~h~~-~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s 1089 (1134)
...+....... --.+.+|+||++++++|+.||+|.+|++++|..+.++... +.+.+..+ .|+| .+...
T Consensus 222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~------~~~~~~~~--~fnP---~~~mf 290 (311)
T KOG1446|consen 222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP------NGGPVSCV--RFNP---RYAMF 290 (311)
T ss_pred eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC------CCCCcccc--ccCC---ceeee
Confidence 88876322222 2267899999999999999999999999999999887743 23444444 6877 46666
Q ss_pred EecCCcEEEEeCCCCC
Q 001163 1090 GLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus 1090 ~~~Dg~v~vW~~~~~~ 1105 (1134)
++.+..+-+|-+...+
T Consensus 291 ~sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 291 VSASSNLVFWLPDEDA 306 (311)
T ss_pred eecCceEEEEeccccc
Confidence 6777789999877655
No 92
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2e-25 Score=218.06 Aligned_cols=241 Identities=20% Similarity=0.268 Sum_probs=208.3
Q ss_pred CCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCc--EEEEEeCCCcEEEEEccc
Q 001163 840 TNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN--IIAIGMEDSSIQIYNVRV 916 (1134)
Q Consensus 840 ~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~--~la~g~~dg~i~iwd~~~ 916 (1134)
..|.++++++|+ ++.++|+|+ |.+|+|||+.+...+..+-.|.+.|+++.|.+ +.. .|.+|+.||.|.+|+...
T Consensus 40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred cccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCC
Confidence 359999999998 688999999 99999999999999999999999999999998 554 899999999999999999
Q ss_pred ceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEe
Q 001163 917 DEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVH 996 (1134)
Q Consensus 917 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~ 996 (1134)
.+++..+++|.+.|+.++++|.+++-++.+.|+.++.||+-+|+... ++.+.. ..+.+.|+|.|.+++++.
T Consensus 117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~--v~~L~~-------~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF--VLNLKN-------KATLVSWSPQGDHFVVSG 187 (362)
T ss_pred eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce--eeccCC-------cceeeEEcCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999987432 222211 135599999999999988
Q ss_pred eceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEE
Q 001163 997 ETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLV 1076 (1134)
Q Consensus 997 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 1076 (1134)
...|-||.+.+......+.. ...+.++.|- ++.+|++|.+|+.|.+||.+++.+.+.+. +|..+|..+.
T Consensus 188 ~~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-------AH~~RVK~i~ 256 (362)
T KOG0294|consen 188 RNKIDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL-------AHENRVKDIA 256 (362)
T ss_pred ccEEEEEecccHhHhhhhhc---cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee-------cchhheeeeE
Confidence 89999999998887777652 3456777775 78889999999999999999987776666 6889999986
Q ss_pred EEecCCCCCEEEEEecCCcEEEEeCCCC
Q 001163 1077 IAGNPTDPNQFALGLTDGGVYIIEPLEA 1104 (1134)
Q Consensus 1077 ~~~~p~~~~~l~s~~~Dg~v~vW~~~~~ 1104 (1134)
.--.| ++.+|+++|.||.|++||+...
T Consensus 257 ~~~~~-~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 257 SYTNP-EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEecC-CceEEEEeccCceEEEEEcccc
Confidence 54455 6899999999999999999876
No 93
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.3e-26 Score=234.19 Aligned_cols=253 Identities=16% Similarity=0.246 Sum_probs=213.7
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 493 (1134)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....+|.|-.++|+.+.|.++++ .+++.+.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 57799999999999999999999999999999998876 334447888899999999999999 799999999999999
Q ss_pred CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCC
Q 001163 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (1134)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 573 (1134)
+...+...++.||++.|+++.|.... ..+++|+.|.+|+.||+....+...+. ....+..++.+ ...++++..|
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~D- 321 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFD- 321 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccc-
Confidence 99999999999999999999986554 349999999999999998766555433 23455555555 4455666554
Q ss_pred CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCC--CCCcceEEEc
Q 001163 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG--LQASPCIRFN 651 (1134)
Q Consensus 574 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s 651 (1134)
..|+.||.++..+......+. .|+++..++++..+.+++.|.++.+.|+++.+....+...+. ....+.+.||
T Consensus 322 ---kkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 322 ---KKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred ---cceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 359999999999999888776 799999999999999999999999999999998888765432 2347899999
Q ss_pred CCCcEEEEEECCCcEEEEEccCCceeEEEe
Q 001163 652 KEGILLAVSTNDNGIKILANADGIRLLRTV 681 (1134)
Q Consensus 652 p~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 681 (1134)
|++.|+++|+.||.|+||++.++ .+...+
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tg-KlE~~l 425 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTG-KLEKVL 425 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCc-eEEEEe
Confidence 99999999999999999999887 444433
No 94
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.4e-26 Score=221.58 Aligned_cols=297 Identities=15% Similarity=0.224 Sum_probs=243.1
Q ss_pred ceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEE
Q 001163 347 KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425 (1134)
Q Consensus 347 ~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 425 (1134)
..+++.+. |.++|+.++-..... ++.+++.|.+.+||.+++|.++.. +.||.+.|++++
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsik 197 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIK 197 (481)
T ss_pred EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEE
Confidence 45555555 999999999988777 889999999999999999998875 789999999999
Q ss_pred EcCCCCEEEEEeCCCEEEEEEc------cC--------C-----------------------ceeeeeeeeecCCCCEEE
Q 001163 426 WSPDGTLFGVAYSKHIVHLYTY------HG--------G-----------------------DELRNHLEIEAHVGSVND 468 (1134)
Q Consensus 426 ~spd~~~las~s~dg~v~iwd~------~~--------~-----------------------~~~~~~~~l~~h~~~V~~ 468 (1134)
|++.+.++++++.|++.+||.. .. + ....+...|.+|.+.|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999999999972 11 0 001134468899999999
Q ss_pred EEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCC-Cceeee
Q 001163 469 LAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVDY 547 (1134)
Q Consensus 469 v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~ 547 (1134)
+.|...|+ -+++++.|.+..+||+++|+.+..+.||....+.++-+|.. .++++.+.|.+.++||++.. .....+
T Consensus 278 ~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VF 353 (481)
T KOG0300|consen 278 CDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVF 353 (481)
T ss_pred hhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeee
Confidence 99999999 58999999999999999999999999999999999887655 89999999999999999843 334567
Q ss_pred cCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC-eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001163 548 DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 626 (1134)
Q Consensus 548 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 626 (1134)
.+|...|++..|..+.+ +++++. +.+|++||++.. .++.++.... +++.++.+..+..++.--++..|++||
T Consensus 354 QGHtdtVTS~vF~~dd~-vVSgSD----DrTvKvWdLrNMRsplATIRtdS--~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTDDR-VVSGSD----DRTVKVWDLRNMRSPLATIRTDS--PANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccccceeEEEEecCCc-eeecCC----CceEEEeeeccccCcceeeecCC--ccceeEeecCCceEEeccCCceEEEEe
Confidence 88888999999987764 666664 446999999876 4556665543 788899998888888888999999999
Q ss_pred cCCCceeEEE--ecCCCCCCcceEEEcCCC--cEEEEEECCCcEEEEEccCC
Q 001163 627 MDNVNLLASI--DADGGLQASPCIRFNKEG--ILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 627 ~~~~~~~~~~--~~~~~~~~v~~v~~sp~~--~~l~~~~~dg~i~iw~~~~~ 674 (1134)
+...++-..- ...+|...|.|++|..+. .-|++++.|..+.-|.+...
T Consensus 427 lnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 427 LNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9765433222 234567789999998654 45788999999999998654
No 95
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=4.8e-25 Score=250.43 Aligned_cols=262 Identities=15% Similarity=0.215 Sum_probs=202.5
Q ss_pred cccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCccccc--CCCCCCCCCCeeEEEEcC
Q 001163 776 AMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTN--DISDTNPEDAVPCFALSK 853 (1134)
Q Consensus 776 ~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~h~~~v~~v~~s~ 853 (1134)
...|....+++|+..+++++.+.....|+..... ..++....|+.... .+. +|.+.|.+++|+|
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~------------~v~~~~~~G~~~~~~~~l~--GH~~~V~~v~fsP 85 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGST------------AVLKHTDYGKLASNPPILL--GQEGPIIDVAFNP 85 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCce------------EEeeccccccCCCCCceEe--CCCCCEEEEEEcC
Confidence 4456666778888888888888888888654310 11223334443221 133 4999999999999
Q ss_pred -CCCeEEEee-CCeEEEEEccCC-------eEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEecc
Q 001163 854 -NDSYVMSAS-GGKISLFNMMTF-------KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK 924 (1134)
Q Consensus 854 -dg~~la~~s-dg~i~lwd~~~~-------~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~ 924 (1134)
++++|++++ |++|++||+.++ +.+..+.+|...|.+++|+|+++.+|++|+.|++|+|||+.+++.+..+.
T Consensus 86 ~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~ 165 (493)
T PTZ00421 86 FDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK 165 (493)
T ss_pred CCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc
Confidence 889999998 999999999764 35678899999999999999445799999999999999999999999999
Q ss_pred CccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-E----eece
Q 001163 925 GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-V----HETQ 999 (1134)
Q Consensus 925 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~----~d~~ 999 (1134)
+|...|.+++|+|+|.+|++++.|++|++||+.+++. +....+|.. .....+.|.+++..+++ + .|++
T Consensus 166 ~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-----v~tl~~H~~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~ 238 (493)
T PTZ00421 166 CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-----VSSVEAHAS--AKSQRCLWAKRKDLIITLGCSKSQQRQ 238 (493)
T ss_pred CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-----EEEEecCCC--CcceEEEEcCCCCeEEEEecCCCCCCe
Confidence 9999999999999999999999999999999988652 222333432 23456789998888776 3 3689
Q ss_pred EEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEe-cCCcEEEeecCCCcceeec
Q 001163 1000 IAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAF-EEGSVGVLTASTLRLRCRI 1058 (1134)
Q Consensus 1000 i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s-~Dg~i~vwd~~~~~~~~~~ 1058 (1134)
|++||+.+...........+...+....|++|+.+|++++ .|+.|++||+.+++++...
T Consensus 239 VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 239 IMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred EEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 9999998765433222123345677788999999999887 5999999999998876544
No 96
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.8e-25 Score=216.64 Aligned_cols=307 Identities=18% Similarity=0.225 Sum_probs=224.8
Q ss_pred CCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCC
Q 001163 640 GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGER 719 (1134)
Q Consensus 640 ~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 719 (1134)
+|...|++++|+.||++|++++.|++|++|++.+-. .+.|.
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~-----~~eHr---------------------------------- 124 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFE-----NKEHR---------------------------------- 124 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhh-----hhhhh----------------------------------
Confidence 557799999999999999999999999999987531 01110
Q ss_pred CcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeec-cCC
Q 001163 720 TAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA-SNA 798 (1134)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~-~dg 798 (1134)
.++ ... ..+..+.+.|+||-+.+++.. ...
T Consensus 125 ------------------------------~~R---------------~nv----e~dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 125 ------------------------------CIR---------------QNV----EYDHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred ------------------------------Hhh---------------ccc----cCCCceEEEECCCcceEEEEEccCC
Confidence 000 000 223567889999987665544 467
Q ss_pred eEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEE
Q 001163 799 VHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM 877 (1134)
Q Consensus 799 ~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~ 877 (1134)
.+++|.+....- |.. +....-||-. . +. ..|.-.+..+-...+++++++++ |.+|.+|++. |+.+
T Consensus 156 ~l~vyk~~K~~d---G~~--~~~~v~~D~~--~-----f~-~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L 221 (420)
T KOG2096|consen 156 KLCVYKLVKKTD---GSG--SHHFVHIDNL--E-----FE-RKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLL 221 (420)
T ss_pred EEEEEEeeeccc---CCC--Cccccccccc--c-----cc-hhcccceEEEeecCCceEEEEecCCCcEEEEecC-Ccee
Confidence 899998764321 110 0011112200 0 11 02566777788888999999999 8889999997 8999
Q ss_pred EEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc---c-----eEEEeccCccCceEEEEEeeCCCEEEEEeCCC
Q 001163 878 TTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV---D-----EVKTKLKGHQKRITGLAFSNTLNVLVSSGADS 949 (1134)
Q Consensus 878 ~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~---~-----~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg 949 (1134)
..+......-+..+.|| +|+++|+++..-.|+||++-- | ..+..++||.+.|.+++||++...++|.+.||
T Consensus 222 ~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG 300 (420)
T KOG2096|consen 222 QSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG 300 (420)
T ss_pred eeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC
Confidence 99887777788899999 999999999999999999742 2 23467889999999999999999999999999
Q ss_pred cEEEEECCCCcc--ccceeeeecC-CCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEE
Q 001163 950 QLCVWSTDGWEK--QASKFLTIPN-GRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHA 1026 (1134)
Q Consensus 950 ~i~iwd~~~~~~--~~~~~~~~~~-~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~ 1026 (1134)
+++|||++-.-. +....++... ......+....++++|.|+.||++...++.+|..++|+....+. ..|+..|+++
T Consensus 301 ~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e-~~h~~~Is~i 379 (420)
T KOG2096|consen 301 KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELE-DIHSTTISSI 379 (420)
T ss_pred cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHH-HhhcCceeeE
Confidence 999999763111 1111222211 00111134458999999999999999999999999998877776 4689999999
Q ss_pred EEccCCCEEEEEecCCcEEEeecCC
Q 001163 1027 TYSCDSQSIYVAFEEGSVGVLTAST 1051 (1134)
Q Consensus 1027 ~~s~dg~~l~s~s~Dg~i~vwd~~~ 1051 (1134)
+|++||++++|++ |..++++.-..
T Consensus 380 s~~~~g~~~atcG-dr~vrv~~ntp 403 (420)
T KOG2096|consen 380 SYSSDGKYIATCG-DRYVRVIRNTP 403 (420)
T ss_pred EecCCCcEEeeec-ceeeeeecCCC
Confidence 9999999999997 67888876433
No 97
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.7e-25 Score=229.80 Aligned_cols=286 Identities=16% Similarity=0.244 Sum_probs=230.8
Q ss_pred eecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeec----cccCccccccccccCCCCEEEEEEcC
Q 001163 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWEL----GACSMPLQASLSSDYTASVNRVMWSP 428 (1134)
Q Consensus 353 ~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~V~~l~~sp 428 (1134)
-.|.-.|+||+++||+++. .+++.||+|.=|++.+|+.... +|.. +....+....- .+|...|.+++.|+
T Consensus 139 ~~H~~s~~~vals~d~~~~-fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~ 212 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRV-FSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSS 212 (479)
T ss_pred ccccCcceEEEeeccccce-eecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEcC
Confidence 3499999999999999964 7999999999999999985521 1221 11222222222 48999999999999
Q ss_pred CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCc
Q 001163 429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES 508 (1134)
Q Consensus 429 d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 508 (1134)
||+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++.+|++
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd 287 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQD 287 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCcc
Confidence 99999999999999999999988666 6899999999999987666 589999999999999999999999999999
Q ss_pred CEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe
Q 001163 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 588 (1134)
Q Consensus 509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 588 (1134)
.|.+|...... ..+-.|+.|+++++|++. ......+.++.+.+.+++|-.+ ..+++|+.++ .|.+|++.+.+
T Consensus 288 ~v~~IdaL~re--R~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG----~IaLWs~~KKk 359 (479)
T KOG0299|consen 288 GVLGIDALSRE--RCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNG----SIALWSLLKKK 359 (479)
T ss_pred ceeeechhccc--ceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCc----eEEEeeecccC
Confidence 99999764333 556666799999999994 4566677777778889988654 5678887644 59999999999
Q ss_pred eEEEecCCCC-----------CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----ceeEEEecCCCCCCcceEEEcCC
Q 001163 589 VKRTYHGLGK-----------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV----NLLASIDADGGLQASPCIRFNKE 653 (1134)
Q Consensus 589 ~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~~sp~ 653 (1134)
++.+....+. ..|++++..|..+.+++|+.+|.|++|-+..+ +++..+.. .+.|++++|+++
T Consensus 360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---~GfVNsl~f~~s 436 (479)
T KOG0299|consen 360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---VGFVNSLAFSNS 436 (479)
T ss_pred ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---ccEEEEEEEccC
Confidence 8887643221 16788999999999999999999999998877 44555543 567999999999
Q ss_pred CcEEEEE
Q 001163 654 GILLAVS 660 (1134)
Q Consensus 654 ~~~l~~~ 660 (1134)
|+.+++|
T Consensus 437 gk~ivag 443 (479)
T KOG0299|consen 437 GKRIVAG 443 (479)
T ss_pred CCEEEEe
Confidence 9966665
No 98
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=7.1e-26 Score=234.65 Aligned_cols=297 Identities=15% Similarity=0.206 Sum_probs=224.0
Q ss_pred ccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEc
Q 001163 773 NLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALS 852 (1134)
Q Consensus 773 ~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s 852 (1134)
..|...|.++++.|.|.++++|+-|..|++||+..-.. .-.. .....+. ....|..+.|+
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMda-----------------s~~~-fr~l~P~--E~h~i~sl~ys 223 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDA-----------------SMRS-FRQLQPC--ETHQINSLQYS 223 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccc-----------------cchh-hhccCcc--cccccceeeec
Confidence 34788999999999999999999999999999874211 1111 1111222 56789999999
Q ss_pred CCCCeEEEee-CCeEEEEEccCCeEEEEe------------cCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce-
Q 001163 853 KNDSYVMSAS-GGKISLFNMMTFKTMTTF------------MPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE- 918 (1134)
Q Consensus 853 ~dg~~la~~s-dg~i~lwd~~~~~~~~~~------------~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~- 918 (1134)
+.|..+++.+ ....+|+|....+..... ++|...++|.+|+|+....+.+++.||++|||++..-+
T Consensus 224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 9999888887 678999998665444333 46888999999999888899999999999999997542
Q ss_pred EEEec-----cCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEE
Q 001163 919 VKTKL-----KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL 993 (1134)
Q Consensus 919 ~~~~l-----~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~ 993 (1134)
.+..+ .+-.-+++.++|++||+++|.|+.||.|.+|+..+..... ...+...|.. ...|+++.||+||++|+
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p--~~~vk~AH~~-g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP--VMKVKDAHLP-GQDITSISFSYDGNYLL 380 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc--ceEeeeccCC-CCceeEEEeccccchhh
Confidence 22222 2334568899999999999999999999999985533222 3334444442 14699999999999999
Q ss_pred E-EeeceEEEEeCCCcc-cceeeccCCCccCEEEEEEccCCCEEEEEec------CCcEEEeecCCCcceeecCCCcccC
Q 001163 994 A-VHETQIAIYEAPKLE-CLKQFVPREASGPITHATYSCDSQSIYVAFE------EGSVGVLTASTLRLRCRINPTAYLP 1065 (1134)
Q Consensus 994 ~-~~d~~i~iwd~~~~~-~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~------Dg~i~vwd~~~~~~~~~~~~~~~~~ 1065 (1134)
+ +.|+++++||+...+ ++..+..-...-.-+.++||||.++|++|+. -|++.+||..+...+.++....
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~--- 457 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIST--- 457 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCC---
Confidence 9 899999999998654 4444432222446678999999999999874 4689999999988887776332
Q ss_pred CCCCCCceeEEEEecCCCCCEEEEEecCCcEEEE-eCC
Q 001163 1066 TNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYII-EPL 1102 (1134)
Q Consensus 1066 ~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW-~~~ 1102 (1134)
...+.+.|+| .-+.|.+|+.||+++++ |..
T Consensus 458 ------aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 458 ------ASVVRCLWHP-KLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred ------ceEEEEeecc-hhhheeeecCCCceEEEECcc
Confidence 2344569999 46778889999998865 444
No 99
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.1e-23 Score=234.29 Aligned_cols=564 Identities=13% Similarity=0.148 Sum_probs=353.9
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCc-eEEEEEeCCCeEEEEEC
Q 001163 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQ-LSVVTCGEDRVIKVWDA 494 (1134)
Q Consensus 416 ~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~-~~l~s~s~d~~i~iwd~ 494 (1134)
|-...-..-.||+|+++++....+ .|.||...+|.++. .+.+|..++..+.+.|.... .++++++.||.|++||.
T Consensus 14 g~n~~~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~ 89 (792)
T KOG1963|consen 14 GRNGNKSPAVFSNDAKFLFLCTGN-FVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDW 89 (792)
T ss_pred cccceecccccccCCcEEEEeeCC-EEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecC
Confidence 333333446789999999888655 69999999999877 79999999999999987663 47889999999999999
Q ss_pred CCCceeEEecCCCcCEEEEecccc--CCccEEEEecCCCc------------EEEEecCCCCc-eeeecCCCCCeeEEEE
Q 001163 495 VTGTKQYIFEGHESPVYSICPHHK--ENIQFIFSTATDGK------------IKAWLYDNLGS-RVDYDAPGHSSTMMAY 559 (1134)
Q Consensus 495 ~~~~~~~~~~~h~~~v~~~~~~~~--~~~~~l~s~s~dg~------------i~vwd~~~~~~-~~~~~~~~~~v~~~~~ 559 (1134)
..+..++++..+- ++..+.+.+. .....+..+..|.. ++-+.+.+... ...+......-..+.+
T Consensus 90 ~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~ 168 (792)
T KOG1963|consen 90 SDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVD 168 (792)
T ss_pred CCcEEEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEE
Confidence 9999998887432 3333322110 00011111111111 11111111000 0000001111356778
Q ss_pred CcCCCEEEEEecCCCCCeEEEEEeCCCCeeE---EEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC--CceeE
Q 001163 560 SADGARLFSCGTNKEGESYLVEWNESEGAVK---RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN--VNLLA 634 (1134)
Q Consensus 560 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~ 634 (1134)
++.|.....+-.. .+.+|+..+.... +....++...+.+.+++|.+++++++..||.|.+|.--. +....
T Consensus 169 ~~~ge~~~i~~~~-----~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t 243 (792)
T KOG1963|consen 169 NNSGEFKGIVHMC-----KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSET 243 (792)
T ss_pred cCCceEEEEEEee-----eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccccc
Confidence 8888877776533 3888988875411 112223333578899999999999999999999996433 33222
Q ss_pred EEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccccccccccccccccc
Q 001163 635 SIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGT 714 (1134)
Q Consensus 635 ~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 714 (1134)
.-..|-|...|.+++|+++|.+|++|+..|.+.+|.+.++. +++..
T Consensus 244 ~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~---kqfLP------------------------------- 289 (792)
T KOG1963|consen 244 CTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK---KQFLP------------------------------- 289 (792)
T ss_pred ceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC---ccccc-------------------------------
Confidence 22334557799999999999999999999999999998873 11111
Q ss_pred CcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeee
Q 001163 715 SLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILAL 794 (1134)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~ 794 (1134)
. -...|..+.+|||+......
T Consensus 290 ---------------------------------------------------------R--Lgs~I~~i~vS~ds~~~sl~ 310 (792)
T KOG1963|consen 290 ---------------------------------------------------------R--LGSPILHIVVSPDSDLYSLV 310 (792)
T ss_pred ---------------------------------------------------------c--cCCeeEEEEEcCCCCeEEEE
Confidence 0 24678899999999999999
Q ss_pred ccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC-CCeEEEeeCCeEEEEEccC
Q 001163 795 ASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN-DSYVMSASGGKISLFNMMT 873 (1134)
Q Consensus 795 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d-g~~la~~sdg~i~lwd~~~ 873 (1134)
..|..|.+-....-. ... ++.-....+..... ...+-.+.++++|- +..+..+-.|.|.+||+.+
T Consensus 311 ~~DNqI~li~~~dl~------~k~--tIsgi~~~~~~~k~------~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t 376 (792)
T KOG1963|consen 311 LEDNQIHLIKASDLE------IKS--TISGIKPPTPSTKT------RPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT 376 (792)
T ss_pred ecCceEEEEeccchh------hhh--hccCccCCCccccc------cccccceeEEEcCCCCceeecCCCceEEEEeccc
Confidence 999999987654210 000 00000011000000 13455678899994 4444445589999999988
Q ss_pred CeEEEEecC-----CC------CCeEEEEEcCCCCcEEEEEe--------CCC--cEEEEEcccce----EE-EeccCcc
Q 001163 874 FKTMTTFMP-----PP------PAATFLAFHPQDNNIIAIGM--------EDS--SIQIYNVRVDE----VK-TKLKGHQ 927 (1134)
Q Consensus 874 ~~~~~~~~~-----~~------~~v~~l~~sp~~~~~la~g~--------~dg--~i~iwd~~~~~----~~-~~l~~h~ 927 (1134)
-+.+..+.. +. -.+++++.+. .|.+++|+- .|| .++.|-..... +. .....|.
T Consensus 377 d~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~ 455 (792)
T KOG1963|consen 377 DSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHG 455 (792)
T ss_pred cceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCC
Confidence 776665431 22 2478888888 688998873 233 57778765432 22 2234588
Q ss_pred CceEEEEEeeC-C-CEEEEEeCCCcEEEEECCCCcc-----ccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceE
Q 001163 928 KRITGLAFSNT-L-NVLVSSGADSQLCVWSTDGWEK-----QASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQI 1000 (1134)
Q Consensus 928 ~~V~~l~~s~d-~-~~l~s~s~Dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i 1000 (1134)
..+...+|.+. . .+.+|++.||.++||-+...+. ..+.+..+...+. .+++.++||.||..|+++.+++|
T Consensus 456 ~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~~I 532 (792)
T KOG1963|consen 456 NAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDDTI 532 (792)
T ss_pred ceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCCEE
Confidence 77777666543 2 3799999999999999844322 1233444433333 47899999999999999999999
Q ss_pred EEEeCCCc-ccceeeccCCCccCEEEEEEccCCC--EEEEEecCCcEEEeecCCCcceeecCCCcccCC-------CCCC
Q 001163 1001 AIYEAPKL-ECLKQFVPREASGPITHATYSCDSQ--SIYVAFEEGSVGVLTASTLRLRCRINPTAYLPT-------NPSL 1070 (1134)
Q Consensus 1001 ~iwd~~~~-~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~-------~h~~ 1070 (1134)
.+||..+. +...... .-..++..++|..... ..+.......+.+|++.+..+...+...-.+-. ...+
T Consensus 533 tiwd~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w~~s~~~~i~~~~~~~~~~~~s 610 (792)
T KOG1963|consen 533 TIWDYDTKNELLCTEG--SRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIWNLSLSLRIEGVHVDRAADGDS 610 (792)
T ss_pred EEecCCChhhhhcccc--ccccchHhHhhhcccccccceeeccCceEehHhhhhhheecchhhhhhhhcchhhhhhcccc
Confidence 99999884 3222222 1133444444433211 122334567899999999887763332211111 1111
Q ss_pred CceeE---EEEecCCCCCEEE--------EEecCCcEEEEeCCCCC
Q 001163 1071 RVYPL---VIAGNPTDPNQFA--------LGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus 1071 ~v~~~---~~~~~p~~~~~l~--------s~~~Dg~v~vW~~~~~~ 1105 (1134)
.+-+. .++|.| ..+. ..+.|+.|.+++.+.++
T Consensus 611 ~v~s~~f~vi~~~p---~~~~~~k~~~~~f~~~~~ril~F~~~~pk 653 (792)
T KOG1963|consen 611 SVGSTAFAVICWLP---ELLLVVKSIEQIFRGRDSRILIFSGDSPK 653 (792)
T ss_pred ccCccceEEEeecc---cchhhhhhhhhhcccccceEEEecCCCch
Confidence 22121 234444 3333 77888889999888777
No 100
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1.6e-24 Score=246.39 Aligned_cols=256 Identities=10% Similarity=0.114 Sum_probs=196.8
Q ss_pred EeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC-CCEEEEEeCCCEEEEEEccCCce-
Q 001163 375 GTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGGDE- 452 (1134)
Q Consensus 375 gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-~~~las~s~dg~v~iwd~~~~~~- 452 (1134)
|+.++.|.+|+......+. .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 5566778888776543322 26899999999999996 89999999999999999986432
Q ss_pred e----eeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEec
Q 001163 453 L----RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA 528 (1134)
Q Consensus 453 ~----~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 528 (1134)
. .....+.+|...|.+++|+|++.. ++++++.|++|+|||+.+++.+..+. |...|.+++|++ +|.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEe
Confidence 1 122357899999999999999874 56899999999999999999888776 667899999865 458999999
Q ss_pred CCCcEEEEecCCCCceeeecCCCCCeeE-----EEECcCCCEEEEEecCCCCCeEEEEEeCCC-CeeEEEecCCCCCc-e
Q 001163 529 TDGKIKAWLYDNLGSRVDYDAPGHSSTM-----MAYSADGARLFSCGTNKEGESYLVEWNESE-GAVKRTYHGLGKRS-V 601 (1134)
Q Consensus 529 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~-v 601 (1134)
.|+.|++||++++.....+..|.+.+.. ..|++++.++++++.++..+..|++||++. ++++..+..+.... +
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 9999999999998887777777764432 235689999999987765556799999995 56666554433222 2
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCC
Q 001163 602 GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654 (1134)
Q Consensus 602 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 654 (1134)
......+++.++++|+.|+.|++|++..+. +..+....+..++.+++|.|..
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 233334557888899999999999998764 4444444445678899999965
No 101
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.8e-26 Score=242.81 Aligned_cols=242 Identities=19% Similarity=0.237 Sum_probs=205.7
Q ss_pred EEEEcC-CCCEEEEEeCCCEEEEEEccCCcee---eeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC-
Q 001163 423 RVMWSP-DGTLFGVAYSKHIVHLYTYHGGDEL---RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG- 497 (1134)
Q Consensus 423 ~l~~sp-d~~~las~s~dg~v~iwd~~~~~~~---~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~- 497 (1134)
.+..++ .++||.+||.||.|++|++...... ....+++.|.+.|+.++...+++ .|+|+|.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 444443 6788999999999999998654321 12336888999999999999998 6999999999999999888
Q ss_pred -ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCcee----------eec-CCCCCeeEEEECcCCCE
Q 001163 498 -TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV----------DYD-APGHSSTMMAYSADGAR 565 (1134)
Q Consensus 498 -~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~----------~~~-~~~~~v~~~~~s~~~~~ 565 (1134)
-+..+++.|...|.|+++. ..+..++++|+.|+.|.+||+.++.... .+. ++...|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 5778899999999999983 3444899999999999999998763311 112 45558999999999988
Q ss_pred EEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCc
Q 001163 566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS 645 (1134)
Q Consensus 566 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 645 (1134)
+++|+..+ .+++||.++++.+..+.+|.. .|..+..++||..+++++.||+|++||+...+++.++..| ...|
T Consensus 186 ivsGgtek----~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH--~e~V 258 (735)
T KOG0308|consen 186 IVSGGTEK----DLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVH--KEGV 258 (735)
T ss_pred EEecCccc----ceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEec--cCce
Confidence 88887655 499999999999999999998 8999999999999999999999999999999999998877 5579
Q ss_pred ceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 646 PCIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 646 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
.++..+|+-..+++|+.||.|..=|+.+.
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999998777664
No 102
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.6e-25 Score=228.39 Aligned_cols=252 Identities=21% Similarity=0.275 Sum_probs=212.9
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeee--------------eee-ecCCCCEEEEEEecCCCce
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNH--------------LEI-EAHVGSVNDLAFSYPNKQL 478 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~--------------~~l-~~h~~~V~~v~~s~~~~~~ 478 (1134)
...|.-+|.|++++||++++++++.|++|.=|++.+|+..+.. ..- .+|...+.+++.++||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 4679999999999999999999999999999999988743100 001 37889999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEE
Q 001163 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA 558 (1134)
Q Consensus 479 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 558 (1134)
+|++|+.|..|.|||.++.+.++.+.+|.+.|.+++|-... ..+++++.|++|++|+++.......+-+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 89999999999999999999999999999999999996555 6799999999999999998888888889999999998
Q ss_pred ECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEec
Q 001163 559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638 (1134)
Q Consensus 559 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (1134)
...-++.+-+++.|+ ++++|++.. +....|.++.. .+.+++|-.+ ..+++|+++|.|.+|++.+.+++.+...
T Consensus 294 aL~reR~vtVGgrDr----T~rlwKi~e-esqlifrg~~~-sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDR----TVRLWKIPE-ESQLIFRGGEG-SIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEeccccc----eeEEEeccc-cceeeeeCCCC-CeeeEEEecc-cceeeccCCceEEEeeecccCceeEeec
Confidence 888888777776644 699999943 33335666654 7888888654 6899999999999999999998877643
Q ss_pred -CC---------CCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCce
Q 001163 639 -DG---------GLQASPCIRFNKEGILLAVSTNDNGIKILANADGIR 676 (1134)
Q Consensus 639 -~~---------~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~ 676 (1134)
|+ +...|++++..|...++++|+.+|.|++|-+.++.+
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence 11 112688999999999999999999999999988844
No 103
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=6.7e-25 Score=223.06 Aligned_cols=285 Identities=15% Similarity=0.199 Sum_probs=245.5
Q ss_pred CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001163 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (1134)
Q Consensus 356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las 435 (1134)
...|+++...|... .+.+|+.|..+.++|...++.+.. +.||...|+.+.|+|+...+++
T Consensus 219 ~pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~ 278 (506)
T KOG0289|consen 219 TPGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVIT 278 (506)
T ss_pred CCCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheee
Confidence 35788888888744 568999999999999999887763 8999999999999999999999
Q ss_pred EeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecC--CCcCEEEE
Q 001163 436 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG--HESPVYSI 513 (1134)
Q Consensus 436 ~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~--h~~~v~~~ 513 (1134)
++.|..|+||......+.. ....|.++|+.+..+|.|. ||++++.|++..+.|+++|.++..... ..-.+++.
T Consensus 279 aSad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~ 353 (506)
T KOG0289|consen 279 ASADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSA 353 (506)
T ss_pred cCCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEe
Confidence 9999999999998766433 5778999999999999999 899999999999999999998876653 23457888
Q ss_pred eccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEe
Q 001163 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY 593 (1134)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 593 (1134)
+|+| ||.++.+|..|+.|++||+........+.+|.++|..++|+.+|-+|++++.|+ .|++||++.-+...++
T Consensus 354 ~fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~----~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 354 AFHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG----SVKLWDLRKLKNFKTI 427 (506)
T ss_pred eEcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCC----eEEEEEehhhccccee
Confidence 8875 458999999999999999999998889999999999999999999999998654 4999999999888888
Q ss_pred cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163 594 HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (1134)
Q Consensus 594 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 671 (1134)
.......+.+++|.+.|.+|+.++.|=.|++++-.+.+.......+.+.+..+++.|....+++++++.|..++++.+
T Consensus 428 ~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 887766899999999999999998887777777655554444444444567889999999999999999999988754
No 104
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.7e-25 Score=241.08 Aligned_cols=259 Identities=15% Similarity=0.266 Sum_probs=222.3
Q ss_pred cCCCCCceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCcccccccccc-CC
Q 001163 341 STDDLPKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSD-YT 418 (1134)
Q Consensus 341 ~~d~~~~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~ 418 (1134)
-++........... +...|+++.|+++|.+ ||+|..+|.|.|||..+.+.+.. +.+ |.
T Consensus 201 lW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~h~ 260 (484)
T KOG0305|consen 201 LWSASSGSVTELCSFGEELVTSVKWSPDGSH-LAVGTSDGTVQIWDVKEQKKTRT-------------------LRGSHA 260 (484)
T ss_pred EEecCCCceEEeEecCCCceEEEEECCCCCE-EEEeecCCeEEEEehhhcccccc-------------------ccCCcC
Confidence 34444444444444 3899999999999995 69999999999999988877654 455 99
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc
Q 001163 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT 498 (1134)
Q Consensus 419 ~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~ 498 (1134)
..|.+++|+ +..+.+|+.|+.|..+|++..+.... .+.+|...|..++|++|+. ++++|+.|+.+.|||....+
T Consensus 261 ~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~~~ 334 (484)
T KOG0305|consen 261 SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLSPE 334 (484)
T ss_pred ceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCCcc
Confidence 999999998 78899999999999999998876543 3889999999999999999 79999999999999998889
Q ss_pred eeEEecCCCcCEEEEeccccCCccEEEEe--cCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCC
Q 001163 499 KQYIFEGHESPVYSICPHHKENIQFIFST--ATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGE 576 (1134)
Q Consensus 499 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 576 (1134)
++..+..|.+.|.+++|+|-.. .+||+| +.|++|++||..++...... ..+..|.++.|++..+.++++... .+
T Consensus 335 p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~v-dtgsQVcsL~Wsk~~kEi~sthG~--s~ 410 (484)
T KOG0305|consen 335 PKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSV-DTGSQVCSLIWSKKYKELLSTHGY--SE 410 (484)
T ss_pred ccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEeccc-ccCCceeeEEEcCCCCEEEEecCC--CC
Confidence 9999999999999999998776 588886 47999999999866555444 346799999999999888776543 34
Q ss_pred eEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 001163 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV 630 (1134)
Q Consensus 577 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 630 (1134)
..|.+|+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-..
T Consensus 411 n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 411 NQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 4699999999999999999998 7999999999999999999999999998765
No 105
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=2.9e-25 Score=230.12 Aligned_cols=299 Identities=18% Similarity=0.243 Sum_probs=230.5
Q ss_pred EEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163 350 VMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 428 (1134)
Q Consensus 350 ~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 428 (1134)
...|. |...|+++++.|.|-++ ++|+.|-+|++||+....... +.|+. +.......|.+++||+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~-~sGs~Dy~v~~wDf~gMdas~-~~fr~-------------l~P~E~h~i~sl~ys~ 224 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARF-VSGSLDYTVKFWDFQGMDASM-RSFRQ-------------LQPCETHQINSLQYSV 224 (641)
T ss_pred eEeccCCceEEEEeeecCCCcee-eeccccceEEEEecccccccc-hhhhc-------------cCcccccccceeeecC
Confidence 33444 78899999999999975 899999999999997654322 12221 1223445899999999
Q ss_pred CCCEEEEEeCCCEEEEEEccCCceee---------eeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce
Q 001163 429 DGTLFGVAYSKHIVHLYTYHGGDELR---------NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK 499 (1134)
Q Consensus 429 d~~~las~s~dg~v~iwd~~~~~~~~---------~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~ 499 (1134)
.|..|++.+.....+|+|-...+... ....-.||...++|.+|+|+.+. .++|++.||+++|||+...+.
T Consensus 225 Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 225 TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred CCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEecCCchh
Confidence 99999999999999999977544332 12234689999999999999988 699999999999999986543
Q ss_pred -eEEe-----cCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceee---ecCCCC--CeeEEEECcCCCEEEE
Q 001163 500 -QYIF-----EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD---YDAPGH--SSTMMAYSADGARLFS 568 (1134)
Q Consensus 500 -~~~~-----~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~~~~--~v~~~~~s~~~~~l~~ 568 (1134)
+..+ .+..-+++.++|+ ++|.+|++|+.||.|.+|+......... -..|.. .|+++.||+||++|++
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~n--rdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlS 381 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWN--RDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLS 381 (641)
T ss_pred heeEEeeccCCCcccCceeeecC--CCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhh
Confidence 3333 2345567888885 5568899999999999999765443322 234444 8999999999999999
Q ss_pred EecCCCCCeEEEEEeCCCC-eeEEEecCCCC-CceEEEEEcCCCCEEEEEe------CCCeEEEEEcCCCceeEEEecCC
Q 001163 569 CGTNKEGESYLVEWNESEG-AVKRTYHGLGK-RSVGVVQFDTTKNRFLAAG------DEFMIKFWDMDNVNLLASIDADG 640 (1134)
Q Consensus 569 ~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~ 640 (1134)
-+.|. .+++||++.. +++....+... ..-+.++|+|+.+.|++|. ..|.+++||..+...++.+...
T Consensus 382 Rg~D~----tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~- 456 (641)
T KOG0772|consen 382 RGFDD----TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS- 456 (641)
T ss_pred ccCCC----ceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC-
Confidence 87654 5999999876 45555444322 2346789999999999985 3578999999999999998866
Q ss_pred CCCCcceEEEcCCCcEEEEEECCCcEEEEEcc
Q 001163 641 GLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (1134)
Q Consensus 641 ~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 672 (1134)
...|..+.|+|.-+.|.+|+.||++++|--.
T Consensus 457 -~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 457 -TASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred -CceEEEEeecchhhheeeecCCCceEEEECc
Confidence 5678899999998899999999999987533
No 106
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.1e-26 Score=227.47 Aligned_cols=286 Identities=16% Similarity=0.249 Sum_probs=227.6
Q ss_pred eeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEe
Q 001163 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWL 537 (1134)
Q Consensus 458 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd 537 (1134)
.|.||.+.|.|++=+|..-. .++||+.||.|+|||+.+.+++.+|..|.+.|..|++.. ..+++++.|++|+.|-
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 47899999999999998733 689999999999999999999999999999999999865 4689999999999998
Q ss_pred cCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCE-EEEE
Q 001163 538 YDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNR-FLAA 616 (1134)
Q Consensus 538 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~ 616 (1134)
++.. ....+. ....+..+.-+..+..++++|. .|.|||.....++..+.-..+ .+.++.|+|.... |+++
T Consensus 136 ~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 136 IDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSILASC 206 (433)
T ss_pred ccCC-cceeee-ccccccccccccccccccccCc------eeeecccccCCccceeecCCC-ceeEEecCCCcchheeee
Confidence 7753 222222 2335666666777788888875 399999998889988877665 7999999998754 5555
Q ss_pred eCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhh
Q 001163 617 GDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAI 696 (1134)
Q Consensus 617 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1134)
+.|+.|.+||++.+.++..+... ..-+.++|+|++-.++++++|..++.+|+......+...
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi~~---mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~--------------- 268 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVILT---MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH--------------- 268 (433)
T ss_pred ccCCceEEEecccCCccceeeee---ccccceecCccccceeeccccccceehhhhhhcccchhh---------------
Confidence 69999999999999999887653 345789999988899999999999999986553222211
Q ss_pred hcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCcccc
Q 001163 697 VKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTA 776 (1134)
Q Consensus 697 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 776 (1134)
.+|.
T Consensus 269 ----------------------------------------------------------------------------~dhv 272 (433)
T KOG0268|consen 269 ----------------------------------------------------------------------------KDHV 272 (433)
T ss_pred ----------------------------------------------------------------------------cccc
Confidence 1377
Q ss_pred ccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCC
Q 001163 777 MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS 856 (1134)
Q Consensus 777 ~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~ 856 (1134)
+.|..+.|||.|+-+++|+-|.+|+||..+... +..... . .--..|.++.||.|.+
T Consensus 273 sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~-------------------SRdiYh---t--kRMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 273 SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH-------------------SRDIYH---T--KRMQHVFCVKYSMDSK 328 (433)
T ss_pred eeEEEeccCCCcchhccccccceEEEeecCCCc-------------------chhhhh---H--hhhheeeEEEEecccc
Confidence 889999999999999999999999999766321 000000 0 0134588999999999
Q ss_pred eEEEee-CCeEEEEEccCCe
Q 001163 857 YVMSAS-GGKISLFNMMTFK 875 (1134)
Q Consensus 857 ~la~~s-dg~i~lwd~~~~~ 875 (1134)
++++|+ |+.|++|...-.+
T Consensus 329 yi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 329 YIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred EEEecCCCcceeeeecchhh
Confidence 999999 7899999875433
No 107
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.1e-24 Score=221.59 Aligned_cols=243 Identities=16% Similarity=0.255 Sum_probs=201.1
Q ss_pred cccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcC
Q 001163 774 LTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK 853 (1134)
Q Consensus 774 ~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~ 853 (1134)
||...|+.+.|+|+...+++++.|..|+||...... .... .. .|..+|+.+..+|
T Consensus 259 Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-------------------~~~~----~~--~h~~~V~~ls~h~ 313 (506)
T KOG0289|consen 259 GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-------------------EPTS----SR--PHEEPVTGLSLHP 313 (506)
T ss_pred CcceEEEEEEeccchhheeecCCcceEEeecccccc-------------------Cccc----cc--cccccceeeeecc
Confidence 377889999999999999999999999999765311 1111 11 2899999999999
Q ss_pred CCCeEEEee-CCeEEEEEccCCeEEEEecC--CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCce
Q 001163 854 NDSYVMSAS-GGKISLFNMMTFKTMTTFMP--PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRI 930 (1134)
Q Consensus 854 dg~~la~~s-dg~i~lwd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V 930 (1134)
.|.|+++++ |+++.+.|+.++..+..... ..-.+++.+|+| ||.++++|..||.|+|||+.++..+..|.+|+++|
T Consensus 314 tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~v 392 (506)
T KOG0289|consen 314 TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPV 392 (506)
T ss_pred CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCce
Confidence 999999999 89999999999998877653 234589999999 99999999999999999999999999999999999
Q ss_pred EEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCcc
Q 001163 931 TGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLE 1009 (1134)
Q Consensus 931 ~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~ 1009 (1134)
..++|+.+|-+||++++|+.|++||+..-+. ...++..+.. ++.++.|.+.|.+|+++ .+=+|++++-.+.+
T Consensus 393 k~i~FsENGY~Lat~add~~V~lwDLRKl~n--~kt~~l~~~~-----~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~ 465 (506)
T KOG0289|consen 393 KAISFSENGYWLATAADDGSVKLWDLRKLKN--FKTIQLDEKK-----EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS 465 (506)
T ss_pred eEEEeccCceEEEEEecCCeEEEEEehhhcc--cceeeccccc-----cceeEEEcCCCCeEEeecceeEEEEEeccccc
Confidence 9999999999999999999999999987552 2334443332 48999999999999994 66667776655444
Q ss_pred cceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeec
Q 001163 1010 CLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTA 1049 (1134)
Q Consensus 1010 ~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~ 1049 (1134)
.........|++..+.+.|..+.+++++++.|..++++.+
T Consensus 466 W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 466 WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 3333333478889999999999999999999999888764
No 108
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=8.6e-25 Score=212.42 Aligned_cols=249 Identities=16% Similarity=0.158 Sum_probs=194.3
Q ss_pred ccCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163 415 SDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1134)
Q Consensus 415 ~~h~~~V~~l~~sp-d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 493 (1134)
...++.|.+|+||| ...+++.||.|++||+|+++....+.. +....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWD 100 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEE
Confidence 45678999999999 666777999999999999987432322 24677999999999999998 799999999999999
Q ss_pred CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCC
Q 001163 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (1134)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 573 (1134)
+.++ .+..+..|.++|..+.|.+..+-..|++||.|++|++||.+.......+..+. .++++.. -..+++++..+
T Consensus 101 L~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata~- 175 (347)
T KOG0647|consen 101 LASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATAE- 175 (347)
T ss_pred ccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEecC-
Confidence 9999 56667789999999999877766789999999999999999877777766543 4444433 23345555433
Q ss_pred CCCeEEEEEeCCCCee-EEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC--ceeEEEecCCC-------CC
Q 001163 574 EGESYLVEWNESEGAV-KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV--NLLASIDADGG-------LQ 643 (1134)
Q Consensus 574 ~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~-------~~ 643 (1134)
..|.+|+++.+.. .+.....-+..+++++...+....+.|+-+|.+.|..++.+ +.-..+..|.. ..
T Consensus 176 ---r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY 252 (347)
T KOG0647|consen 176 ---RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY 252 (347)
T ss_pred ---CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence 3499999976633 33333334446889999999988899999999999998876 33334444432 23
Q ss_pred CcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 644 ASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 644 ~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
.|++++|+|.-..|++++.||++.+||-...
T Consensus 253 aVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 253 AVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred EecceEeecccceEEEecCCceEEEecchhh
Confidence 5789999999899999999999999996543
No 109
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=8.5e-25 Score=248.04 Aligned_cols=279 Identities=14% Similarity=0.193 Sum_probs=238.2
Q ss_pred ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163 775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 854 (1134)
Q Consensus 775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d 854 (1134)
+...+.+..|. +..+++++.++++++|+ ..++..+...+.| |.+.|.++++..-
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~----------------------~~~~~~i~~~l~G--H~g~V~~l~~~~~ 260 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWD----------------------LNNGYLILTRLVG--HFGGVWGLAFPSG 260 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEee----------------------cccceEEEeeccC--CCCCceeEEEecC
Confidence 45567777777 56699999999998885 4555555555655 9999999999987
Q ss_pred CCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEE
Q 001163 855 DSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGL 933 (1134)
Q Consensus 855 g~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l 933 (1134)
+.++++|+ |.++++||..+|++...+.+|...+.++...+ .++++|+.|.+|++|++.++..+..+.+|.++|.++
T Consensus 261 ~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 261 GDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred CCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 88999999 99999999999999999999999999999865 688899999999999999999999999999999999
Q ss_pred EEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCc-ccc
Q 001163 934 AFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKL-ECL 1011 (1134)
Q Consensus 934 ~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~-~~~ 1011 (1134)
..+ +.++++|+.|++|++||+.+++ ++....+|. ..|.++.+... ..++. +.|++|++||+.++ +++
T Consensus 338 ~~~--~~~lvsgs~d~~v~VW~~~~~~-----cl~sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~ 406 (537)
T KOG0274|consen 338 QLD--EPLLVSGSYDGTVKVWDPRTGK-----CLKSLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCI 406 (537)
T ss_pred Eec--CCEEEEEecCceEEEEEhhhce-----eeeeecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhh
Confidence 997 8899999999999999999755 788888887 57999987776 66666 68999999999999 888
Q ss_pred eeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEe
Q 001163 1012 KQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGL 1091 (1134)
Q Consensus 1012 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~ 1091 (1134)
..+. +|.+-+.++.+ .+++|++++.|++|++||..+++.+..+... |...|+.++.. ...+++++
T Consensus 407 ~tl~--~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~------~~~~v~~l~~~-----~~~il~s~ 471 (537)
T KOG0274|consen 407 HTLQ--GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR------HVGGVSALALG-----KEEILCSS 471 (537)
T ss_pred hhhc--CCccccccccc--ccceeEeccccccEEEeecccCceeeeeccC------CcccEEEeecC-----cceEEEEe
Confidence 8887 78888866665 6889999999999999999999998877732 45667766331 36899999
Q ss_pred cCCcEEEEeCCCCCCCc
Q 001163 1092 TDGGVYIIEPLEAEGRW 1108 (1134)
Q Consensus 1092 ~Dg~v~vW~~~~~~~~~ 1108 (1134)
.||++.+||+.+.....
T Consensus 472 ~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 472 DDGSVKLWDLRSGTLIR 488 (537)
T ss_pred cCCeeEEEecccCchhh
Confidence 99999999998877654
No 110
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.6e-25 Score=209.58 Aligned_cols=251 Identities=13% Similarity=0.219 Sum_probs=206.2
Q ss_pred eEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163 349 VVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 428 (1134)
Q Consensus 349 ~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 428 (1134)
..+.+.-.+.+..|+||+.....+++++.||+++|||...... +...++.|...|.++.|++
T Consensus 53 e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Svdwn~ 114 (311)
T KOG0277|consen 53 ECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSVDWNT 114 (311)
T ss_pred EEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEecccc
Confidence 3444556789999999999888889999999999999543321 1123788999999999999
Q ss_pred -CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCC
Q 001163 429 -DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 507 (1134)
Q Consensus 429 -d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~ 507 (1134)
+++.++++|.|++|++|+...+..+. ++.||...|...+|+|.... +++++|.|+++++||++.......+..|.
T Consensus 115 ~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~i~ah~ 190 (311)
T KOG0277|consen 115 VRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMSIEAHN 190 (311)
T ss_pred ccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeEEEecc
Confidence 67788888999999999998887666 79999999999999998776 79999999999999998755555589999
Q ss_pred cCEEEEeccccCCccEEEEecCCCcEEEEecCCCC-ceeeecCCCCCeeEEEECcCCC-EEEEEecCCCCCeEEEEEeCC
Q 001163 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG-SRVDYDAPGHSSTMMAYSADGA-RLFSCGTNKEGESYLVEWNES 585 (1134)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~ 585 (1134)
..|.++.|+.... ..+++|+.|+.|+.||++..+ +..++.+|+-.|+.+.|||... .|++++. +.++++||..
T Consensus 191 ~Eil~cdw~ky~~-~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY----DmT~riw~~~ 265 (311)
T KOG0277|consen 191 SEILCCDWSKYNH-NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY----DMTVRIWDPE 265 (311)
T ss_pred ceeEeecccccCC-cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc----cceEEecccc
Confidence 9999999976543 799999999999999998765 4556777888999999999764 6677765 4569999998
Q ss_pred CCe-eEEEecCCCCCceEEEEEcCC-CCEEEEEeCCCeEEEEEc
Q 001163 586 EGA-VKRTYHGLGKRSVGVVQFDTT-KNRFLAAGDEFMIKFWDM 627 (1134)
Q Consensus 586 ~~~-~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~ 627 (1134)
.+. .+.++..|.. .+..+.|++- ..++++++-|+.++||+.
T Consensus 266 ~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 266 RQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 654 4455555554 7888888874 578999999999999984
No 111
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.7e-24 Score=196.64 Aligned_cols=304 Identities=14% Similarity=0.151 Sum_probs=226.0
Q ss_pred ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163 775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 854 (1134)
Q Consensus 775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d 854 (1134)
....|.+++|.|.|...++++...+.+|...+.-.-...+...+. .+.. ++. -....|.+.|.|.+|||+
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~------~pp~--v~~--kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAK------QPPS--VLC--KRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCccccccccc------CCCe--EEe--eeccccCccEEEEEecCc
Confidence 567899999999999999999999999976542110000000000 0000 000 111248999999999999
Q ss_pred CCeEEEee-CCeEEEEEcc--CCeE---EEEecCCCCCeEEEEEcCC---CCcEEEEEe-CCCcEEEEEcccceEEEecc
Q 001163 855 DSYVMSAS-GGKISLFNMM--TFKT---MTTFMPPPPAATFLAFHPQ---DNNIIAIGM-EDSSIQIYNVRVDEVKTKLK 924 (1134)
Q Consensus 855 g~~la~~s-dg~i~lwd~~--~~~~---~~~~~~~~~~v~~l~~sp~---~~~~la~g~-~dg~i~iwd~~~~~~~~~l~ 924 (1134)
|.++++|+ |.+|++..+. +... -.++.-|.+.|..++|-.+ ++.+|++++ .|-.|++-|..+|+..+.+.
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 99999999 8888887653 3322 2346679999999999642 466888765 46688888999999999999
Q ss_pred CccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCC----CCCCCceEEEEcCCCCEEEEE-eece
Q 001163 925 GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRT----ASALADTRVQFHLDQTHLLAV-HETQ 999 (1134)
Q Consensus 925 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~l~fs~dg~~l~~~-~d~~ 999 (1134)
+|.+.|.++ ++=+|-++++|+.|.+|++||+.-.. ++....... ...+.|.+++..|.|++|+++ .|..
T Consensus 181 ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~-----~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss 254 (350)
T KOG0641|consen 181 GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNS-----CVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS 254 (350)
T ss_pred CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccc-----eeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc
Confidence 999999886 34468899999999999999987643 222221111 112679999999999999997 7899
Q ss_pred EEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEe
Q 001163 1000 IAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAG 1079 (1134)
Q Consensus 1000 i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 1079 (1134)
..+||+..++.+..+. .|+..|.++.|||...||++++.|..|++-|++.. +...+. ..+...|.+.+. .+.|
T Consensus 255 c~lydirg~r~iq~f~--phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~--~~vv~ehkdk~i--~~rw 327 (350)
T KOG0641|consen 255 CMLYDIRGGRMIQRFH--PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELP--IMVVAEHKDKAI--QCRW 327 (350)
T ss_pred eEEEEeeCCceeeeeC--CCccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCc--eEEEEeccCceE--EEEe
Confidence 9999999999999998 78999999999999999999999999999998753 222221 122223666544 4589
Q ss_pred cCCCCCEEEEEecCCcEEEEeCC
Q 001163 1080 NPTDPNQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus 1080 ~p~~~~~l~s~~~Dg~v~vW~~~ 1102 (1134)
+|++ --+++.+.|.++-+|.+.
T Consensus 328 h~~d-~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 328 HPQD-FSFISSSADKTATLWALN 349 (350)
T ss_pred cCcc-ceeeeccCcceEEEeccC
Confidence 9964 568889999999999764
No 112
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.8e-24 Score=211.46 Aligned_cols=243 Identities=19% Similarity=0.248 Sum_probs=205.7
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 493 (1134)
+..|.++|+++|. ++.|+|+||.|-+|+|||+.+..++. .+..|.+.|+++.|.++-..-.|++|+.||.|.+|+
T Consensus 39 ~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 39 FSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred ccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 6789999999999 58999999999999999999887665 677899999999999886433599999999999999
Q ss_pred CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCC
Q 001163 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (1134)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 573 (1134)
...-.++.++++|.+.|+.++++|++ .+-++.+.|+.+++||+-.++.-........ -..+.|+|.|.+++..+.++
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~~~~ 190 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSGRNK 190 (362)
T ss_pred cCCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEeccE
Confidence 99999999999999999999998876 7889999999999999988877666655333 34489999999988887543
Q ss_pred CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEE--c
Q 001163 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF--N 651 (1134)
Q Consensus 574 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~--s 651 (1134)
|-+|.+.+......+.... .+.++.|. ++..+++|++|+.|.+||.++..+...+..| ...|..+.+ .
T Consensus 191 -----i~i~q~d~A~v~~~i~~~~--r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH--~~RVK~i~~~~~ 260 (362)
T KOG0294|consen 191 -----IDIYQLDNASVFREIENPK--RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH--ENRVKDIASYTN 260 (362)
T ss_pred -----EEEEecccHhHhhhhhccc--cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc--hhheeeeEEEec
Confidence 9999988877666555432 45556564 5679999999999999999998888888866 668888874 4
Q ss_pred CCCcEEEEEECCCcEEEEEccCC
Q 001163 652 KEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 652 p~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
|++.+|++++.||.|++||+...
T Consensus 261 ~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 261 PEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CCceEEEEeccCceEEEEEcccc
Confidence 67899999999999999998765
No 113
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.1e-24 Score=210.60 Aligned_cols=309 Identities=16% Similarity=0.187 Sum_probs=206.8
Q ss_pred ccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceee-eeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeE
Q 001163 411 ASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELR-NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI 489 (1134)
Q Consensus 411 ~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i 489 (1134)
...+++|.+.|++++||.||++||+++.|++|+||+++.-..-. .....+-.-+.-+.++|+||-+. +++++-...++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s-~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKS-VVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcce-EEEEEccCCEE
Confidence 34589999999999999999999999999999999997632110 00011112234678999999886 56777777899
Q ss_pred EEEECCC---CceeEE--------e-cCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEE
Q 001163 490 KVWDAVT---GTKQYI--------F-EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMM 557 (1134)
Q Consensus 490 ~iwd~~~---~~~~~~--------~-~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 557 (1134)
++|.+.. |..... | +.|+..|..+-+ .+++.+|++++.|..|.+|++. ++....+......-+..
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA 234 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence 9997643 222111 1 236666666655 4566899999999999999998 55555555555566777
Q ss_pred EECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Q 001163 558 AYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID 637 (1134)
Q Consensus 558 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 637 (1134)
+.||+|+++++++...| +.+|. ++|..+|.+ ..-..+..+.
T Consensus 235 avSP~GRFia~~gFTpD----VkVwE--------------------~~f~kdG~f---------------qev~rvf~Lk 275 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPD----VKVWE--------------------PIFTKDGTF---------------QEVKRVFSLK 275 (420)
T ss_pred eeCCCCcEEEEecCCCC----ceEEE--------------------EEeccCcch---------------hhhhhhheec
Confidence 88888888888876443 66664 334444321 1112223333
Q ss_pred cCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcC
Q 001163 638 ADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLG 717 (1134)
Q Consensus 638 ~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 717 (1134)
+|...|...+|+++...+++.+.||+++|||++-.... + ..
T Consensus 276 --GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~-----~-qD------------------------------- 316 (420)
T KOG2096|consen 276 --GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA-----G-QD------------------------------- 316 (420)
T ss_pred --cchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec-----C-CC-------------------------------
Confidence 66889999999999999999999999999997533100 0 00
Q ss_pred CCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccC
Q 001163 718 ERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN 797 (1134)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d 797 (1134)
+...+....+.+........+..+|+|+.|+....
T Consensus 317 --------------------------------------------pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g- 351 (420)
T KOG2096|consen 317 --------------------------------------------PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG- 351 (420)
T ss_pred --------------------------------------------chHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-
Confidence 00000000111112223347899999997766554
Q ss_pred CeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEE
Q 001163 798 AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFN 870 (1134)
Q Consensus 798 g~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd 870 (1134)
..+++|.-. +|+.....-. .|...|.+++|+++|+++++++|..++++.
T Consensus 352 s~l~~~~se----------------------~g~~~~~~e~--~h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 352 SDLKVFASE----------------------DGKDYPELED--IHSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred CceEEEEcc----------------------cCccchhHHH--hhcCceeeEEecCCCcEEeeecceeeeeec
Confidence 456666433 3332221111 389999999999999999999999998886
No 114
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.1e-25 Score=214.21 Aligned_cols=333 Identities=14% Similarity=0.204 Sum_probs=248.3
Q ss_pred eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEE
Q 001163 588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK 667 (1134)
Q Consensus 588 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~ 667 (1134)
+.++.+.+|.+ .|..++.....+.+.+++.|.+.+||.+++|+++..+.+| .+.|+++.|++.+.++++++.|++..
T Consensus 139 ~lvre~~GHkD-GiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH--~GSVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 139 RLVRELEGHKD-GIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGH--TGSVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred eehhhhccccc-ceeeehhhcCCcceeecccccceeEEeeccccceeeeccc--ccceeeEEeccccceEEEccCCcchH
Confidence 45667888887 8888888777788888999999999999999999999866 77999999999999999999999999
Q ss_pred EEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccc
Q 001163 668 ILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEA 747 (1134)
Q Consensus 668 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (1134)
||...-..+...... | ...+++
T Consensus 216 IW~~av~~~vP~~~a-------------------------------~------------~~hSsE--------------- 237 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNA-------------------------------P------------SDHSSE--------------- 237 (481)
T ss_pred HHHHhhcCcCCCCCC-------------------------------C------------CCCCch---------------
Confidence 997543210000000 0 000000
Q ss_pred ccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCC
Q 001163 748 VEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQP 827 (1134)
Q Consensus 748 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~ 827 (1134)
..+.--|- | ..-..-....|| .+|++
T Consensus 238 -eE~e~sDe------------------~-~~d~d~~~~sD~---------~tiRv------------------------- 263 (481)
T KOG0300|consen 238 -EEEEHSDE------------------H-NRDTDSSEKSDG---------HTIRV------------------------- 263 (481)
T ss_pred -hhhhcccc------------------c-ccccccccccCC---------ceeee-------------------------
Confidence 00000000 0 000000000011 12222
Q ss_pred CCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCC
Q 001163 828 PSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED 906 (1134)
Q Consensus 828 ~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~d 906 (1134)
....+.+ |...|.+..|...|+.+++++ |.+..+||+++++.+..+.+|..+.+-++-+| ..+++++.+.|
T Consensus 264 -----Pl~~ltg--H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrD 335 (481)
T KOG0300|consen 264 -----PLMRLTG--HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRD 335 (481)
T ss_pred -----eeeeeec--cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccC
Confidence 0111333 999999999999999999999 99999999999999999999999999999999 88999999999
Q ss_pred CcEEEEEcccc-eEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEE
Q 001163 907 SSIQIYNVRVD-EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQF 985 (1134)
Q Consensus 907 g~i~iwd~~~~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~f 985 (1134)
-+.++||.... ..+..|+||.+.|+++.|.-|. .+++|++|.+|++||+.+-+.. +..+.. ++++..++.
T Consensus 336 tTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsp---lATIRt-----dS~~NRvav 406 (481)
T KOG0300|consen 336 TTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSP---LATIRT-----DSPANRVAV 406 (481)
T ss_pred ceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCc---ceeeec-----CCccceeEe
Confidence 99999999854 4578899999999999998654 7899999999999999874421 111111 146899999
Q ss_pred cCCCCEEEEE-eeceEEEEeCCCcccceee--ccCCCccCEEEEEEccCCCE--EEEEecCCcEEEeecCCC
Q 001163 986 HLDQTHLLAV-HETQIAIYEAPKLECLKQF--VPREASGPITHATYSCDSQS--IYVAFEEGSVGVLTASTL 1052 (1134)
Q Consensus 986 s~dg~~l~~~-~d~~i~iwd~~~~~~~~~~--~~~~h~~~v~~~~~s~dg~~--l~s~s~Dg~i~vwd~~~~ 1052 (1134)
+..+..++.- .++.|++||++.....+.. ..++|..-|+|++|+.+.-. |++++-|..+.-|++...
T Consensus 407 s~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 407 SKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9999999994 6789999999855443333 24689999999999876543 899999999999998653
No 115
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=8.6e-25 Score=233.33 Aligned_cols=293 Identities=20% Similarity=0.246 Sum_probs=235.2
Q ss_pred cCCCee---EEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCC
Q 001163 355 QGSAVK---SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT 431 (1134)
Q Consensus 355 h~~~V~---~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~ 431 (1134)
|...|. ++..++.+.++|.+|+.||.|++|++....... +.++. ..+..|.+.|+.++..-+|+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~------------s~~~~-asme~HsDWVNDiiL~~~~~ 86 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP------------STPYI-ASMEHHSDWVNDIILCGNGK 86 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCc------------ccchh-hhhhhhHhHHhhHHhhcCCC
Confidence 334455 566666555567899999999999987544321 11111 23678999999999999999
Q ss_pred EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEE-ecCCCceEEEEEeCCCeEEEEECCCC--ceeEE------
Q 001163 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF-SYPNKQLSVVTCGEDRVIKVWDAVTG--TKQYI------ 502 (1134)
Q Consensus 432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~-s~~~~~~~l~s~s~d~~i~iwd~~~~--~~~~~------ 502 (1134)
.|+++|.|-+|++|+...+. ..+..++..|.+.|.|++. .++.. ++||||-|+.|.+||+.+| +.+.+
T Consensus 87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 99999999999999998874 2233468889999999999 66666 8999999999999999988 33332
Q ss_pred --ec-CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEE
Q 001163 503 --FE-GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYL 579 (1134)
Q Consensus 503 --~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 579 (1134)
+. |+..+|++++.+ +.|..+++|+..+.+++||.++......+.+|...|..+..++||+.+++++.| ++|
T Consensus 164 ~sl~sG~k~siYSLA~N--~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSD----gtI 237 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMN--QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSD----GTI 237 (735)
T ss_pred ccCCCCCccceeeeecC--CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCC----ceE
Confidence 23 788999999875 445899999999999999999999999999999999999999999999999864 469
Q ss_pred EEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEE
Q 001163 580 VEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAV 659 (1134)
Q Consensus 580 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~ 659 (1134)
++||+...+++.++..|.+ .+.++..+|+=..+++|+.||.|+.=|+++......+-.. ..+|..+..+...+-+-+
T Consensus 238 rlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~--daPv~~l~~~~~~~~~Wv 314 (735)
T KOG0308|consen 238 RLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE--DAPVLKLHLHEHDNSVWV 314 (735)
T ss_pred EeeeccccceeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC--CCchhhhhhccccCCcee
Confidence 9999999999999999998 6999999999999999999999999999885433333222 335667777654444566
Q ss_pred EECCCcEEEEEcc
Q 001163 660 STNDNGIKILANA 672 (1134)
Q Consensus 660 ~~~dg~i~iw~~~ 672 (1134)
++.|+.|+-|...
T Consensus 315 tTtds~I~rW~~~ 327 (735)
T KOG0308|consen 315 TTTDSSIKRWKLE 327 (735)
T ss_pred eeccccceecCCc
Confidence 7788888888654
No 116
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=3e-24 Score=231.16 Aligned_cols=282 Identities=15% Similarity=0.292 Sum_probs=236.7
Q ss_pred eeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEE-EE
Q 001163 348 TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNR-VM 425 (1134)
Q Consensus 348 ~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~ 425 (1134)
++.+.++ |+..|..+++.+... ++++|.||++++|+-..++.+.. ..+.+|.+-|.+ ++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~~--i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGVC--IISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSIC 65 (745)
T ss_pred eeEEEeccCccchheeEecCCeE--EeecCCCCceeeeeccCcccccc-----------------eecccCcceeeccce
Confidence 3455665 999999999988874 67999999999999877665442 235678888888 88
Q ss_pred EcC-CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEec
Q 001163 426 WSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE 504 (1134)
Q Consensus 426 ~sp-d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 504 (1134)
+-+ ++-.|++|+.|++|.+|.......+. .|.+|+..|.++....++. ++|||.|.++++|- .+++...+.
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~ 137 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQ 137 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccC
Confidence 886 66679999999999999999887655 7999999999999877775 89999999999996 677888899
Q ss_pred CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeC
Q 001163 505 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 584 (1134)
Q Consensus 505 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 584 (1134)
+|...|+++...+. +.++|||.|++|++|.- ++....+.+|...|+.+++-+++. +++++. ++.|++|++
T Consensus 138 gH~asVWAv~~l~e---~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsN----Dg~Ir~w~~ 207 (745)
T KOG0301|consen 138 GHTASVWAVASLPE---NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSN----DGSIRLWDL 207 (745)
T ss_pred CcchheeeeeecCC---CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecC----CceEEEEec
Confidence 99999999987554 38999999999999954 667778889999999999988764 566665 446999999
Q ss_pred CCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC
Q 001163 585 SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 664 (1134)
Q Consensus 585 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg 664 (1134)
+|+.+.++.+|.. .+.++....++..++++++|++++||+.. ++.+.+..+ ...|.++.+-++|. +++|+.||
T Consensus 208 -~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP--ttsiWsa~~L~NgD-Ivvg~SDG 280 (745)
T KOG0301|consen 208 -DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP--TTSIWSAKVLLNGD-IVVGGSDG 280 (745)
T ss_pred -cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC--ccceEEEEEeeCCC-EEEeccCc
Confidence 8999999999998 89999988888999999999999999976 777777765 34688888888876 56788999
Q ss_pred cEEEEEccC
Q 001163 665 GIKILANAD 673 (1134)
Q Consensus 665 ~i~iw~~~~ 673 (1134)
.||||....
T Consensus 281 ~VrVfT~~k 289 (745)
T KOG0301|consen 281 RVRVFTVDK 289 (745)
T ss_pred eEEEEEecc
Confidence 999998754
No 117
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.9e-25 Score=221.92 Aligned_cols=284 Identities=14% Similarity=0.208 Sum_probs=229.1
Q ss_pred eecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCE
Q 001163 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (1134)
Q Consensus 353 ~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 432 (1134)
-+|.++|.|++=+|..-..+|+|+.||.|+|||+.+.+++.. +..|.+.|..|++.. ..
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v~~--~~ 121 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICVTQ--TS 121 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEecc--cc
Confidence 359999999999998855789999999999999998877664 678999999999987 78
Q ss_pred EEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEE
Q 001163 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 512 (1134)
Q Consensus 433 las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 512 (1134)
+++++.|.+|+.|.+... ..+ ++. -...+..+.-+..+. .++|||. .|-|||.....++..+.--...|.+
T Consensus 122 ~~tvgdDKtvK~wk~~~~-p~~---til-g~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~s 192 (433)
T KOG0268|consen 122 FFTVGDDKTVKQWKIDGP-PLH---TIL-GKSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSISS 192 (433)
T ss_pred eEEecCCcceeeeeccCC-cce---eee-ccccccccccccccc--cccccCc--eeeecccccCCccceeecCCCceeE
Confidence 899999999999998763 222 333 234466666666666 6889886 5899999999999999888888999
Q ss_pred EeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC-eeEE
Q 001163 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG-AVKR 591 (1134)
Q Consensus 513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~ 591 (1134)
+.|+|... .+|++++.|+.|.+||++...+...+.. ...-+.++|+|.+-.++++. .+..++.+|++.- +++.
T Consensus 193 vkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~----ED~nlY~~DmR~l~~p~~ 266 (433)
T KOG0268|consen 193 VKFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAAN----EDHNLYTYDMRNLSRPLN 266 (433)
T ss_pred EecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecc----ccccceehhhhhhcccch
Confidence 99988665 6888999999999999998777665443 23456789999665666654 3556999999865 5666
Q ss_pred EecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163 592 TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (1134)
Q Consensus 592 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 671 (1134)
.+.+|.. .|.++.|+|.|.-+++||.|.+|+||..+.+..-..+-. .....|.|+.|+.|.+++++|++|+.|++|..
T Consensus 267 v~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 267 VHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred hhcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 6777766 899999999999999999999999999987754433321 22456899999999999999999999999987
Q ss_pred cCC
Q 001163 672 ADG 674 (1134)
Q Consensus 672 ~~~ 674 (1134)
...
T Consensus 345 ~As 347 (433)
T KOG0268|consen 345 KAS 347 (433)
T ss_pred chh
Confidence 544
No 118
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=2.6e-24 Score=231.60 Aligned_cols=274 Identities=14% Similarity=0.198 Sum_probs=223.6
Q ss_pred ccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccc-cCCCCCCCCCCeeE-EE
Q 001163 773 NLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMT-NDISDTNPEDAVPC-FA 850 (1134)
Q Consensus 773 ~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~h~~~v~~-v~ 850 (1134)
.+|...|..+++.++. .+++++.||++++|+-.. +..+. ..+. +|.+.|.. ++
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~----------------------~~~l~~~~~~--~~~g~i~~~i~ 65 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKG----------------------KQYLETHAFE--GPKGFIANSIC 65 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccC----------------------cccccceecc--cCcceeeccce
Confidence 4688999888876655 699999999999996332 11111 1122 25666655 77
Q ss_pred EcC-CCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccC
Q 001163 851 LSK-NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQK 928 (1134)
Q Consensus 851 ~s~-dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~ 928 (1134)
+.+ ++-.+++|+ |.+|.+|...+..++.++++|...|.|+.... ++. +++|++|.+++||.. +++...+++|..
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a 141 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA 141 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence 774 444577777 99999999999999999999999999999876 565 999999999999976 566777999999
Q ss_pred ceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCc
Q 001163 929 RITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKL 1008 (1134)
Q Consensus 929 ~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~ 1008 (1134)
.|+++++-|++ .++|||.|.+|++|.-.+ .++.+.+|. +-|+.+++-+++.+|-++.||.|+.|++ +|
T Consensus 142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHt---D~VRgL~vl~~~~flScsNDg~Ir~w~~-~g 209 (745)
T KOG0301|consen 142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHT---DCVRGLAVLDDSHFLSCSNDGSIRLWDL-DG 209 (745)
T ss_pred heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccch---hheeeeEEecCCCeEeecCCceEEEEec-cC
Confidence 99999999988 889999999999998644 677888887 5899999999999999999999999999 78
Q ss_pred ccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEE
Q 001163 1009 ECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFA 1088 (1134)
Q Consensus 1009 ~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~ 1088 (1134)
+++..+. +|..-|.++....+++.++++++|++++||+.. +....+..+ +-.|+++.+- + +.-++
T Consensus 210 e~l~~~~--ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP-------ttsiWsa~~L--~--NgDIv 274 (745)
T KOG0301|consen 210 EVLLEMH--GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP-------TTSIWSAKVL--L--NGDIV 274 (745)
T ss_pred ceeeeee--ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC-------ccceEEEEEe--e--CCCEE
Confidence 9888887 999999999999999999999999999999987 333333322 2456766443 3 34688
Q ss_pred EEecCCcEEEEeCC
Q 001163 1089 LGLTDGGVYIIEPL 1102 (1134)
Q Consensus 1089 s~~~Dg~v~vW~~~ 1102 (1134)
+|+.||.||||...
T Consensus 275 vg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 275 VGGSDGRVRVFTVD 288 (745)
T ss_pred EeccCceEEEEEec
Confidence 99999999999876
No 119
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.2e-24 Score=204.84 Aligned_cols=254 Identities=18% Similarity=0.267 Sum_probs=209.3
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEec--CCCceEEEEEeCCCeEE
Q 001163 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY--PNKQLSVVTCGEDRVIK 490 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~--~~~~~~l~s~s~d~~i~ 490 (1134)
+...|++.|..+...--|++||+++.|++|+|+.++.+.......+|.||.++|+.++|.. -|. +|++++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 3578999999999999999999999999999999998776666778999999999999987 577 899999999999
Q ss_pred EEECCCCc--eeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCC---ceeeecCCCCCeeEEEECcC---
Q 001163 491 VWDAVTGT--KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG---SRVDYDAPGHSSTMMAYSAD--- 562 (1134)
Q Consensus 491 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~s~~--- 562 (1134)
||.-.+|+ ..+....|...|++++|.|..-|-.|++++.||.|.+.+++..+ .......|.-.|++++|.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 99987774 34567789999999999999999999999999999999988762 23345567778999999886
Q ss_pred C-----------CEEEEEecCCCCCeEEEEEeCCCC--eeEEEecCCCCCceEEEEEcCCC----CEEEEEeCCCeEEEE
Q 001163 563 G-----------ARLFSCGTNKEGESYLVEWNESEG--AVKRTYHGLGKRSVGVVQFDTTK----NRFLAAGDEFMIKFW 625 (1134)
Q Consensus 563 ~-----------~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~iw 625 (1134)
| +.|++++.| ..|.+|+...+ +..+++.+|.+ .|+.++|.|.- .++++++.||++.||
T Consensus 164 g~~~~~~~~~~~krlvSgGcD----n~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGCD----NLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred ccccccCcccccceeeccCCc----cceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 5 568888764 45999998876 34456888887 89999999975 579999999999999
Q ss_pred EcCCC-ceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163 626 DMDNV-NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (1134)
Q Consensus 626 d~~~~-~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 673 (1134)
..+.. +.-...-.+.....+..+.|+..|+.|++++.|+.+.+|.-+.
T Consensus 239 t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 239 TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 87632 1111111223356789999999999999999999999997543
No 120
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.1e-22 Score=222.85 Aligned_cols=518 Identities=15% Similarity=0.159 Sum_probs=332.0
Q ss_pred eecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCc-cEEEEecCCCcEEEEe
Q 001163 459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI-QFIFSTATDGKIKAWL 537 (1134)
Q Consensus 459 l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~dg~i~vwd 537 (1134)
+.|-...-..-.|++|++. ++. ..+..|.|+...+|.++..+.+|..++..+.+.+.... .++++++.||.|++||
T Consensus 12 lgg~n~~~~~avfSnD~k~--l~~-~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd 88 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKF--LFL-CTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWD 88 (792)
T ss_pred eccccceecccccccCCcE--EEE-eeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEec
Confidence 3333333445578999983 333 33569999999999999999999999999998877654 6788999999999999
Q ss_pred cCCCCceeeecCCCCCeeEEEECc---CCCEEEEEecCCCCCeEEEEEeCCCCee-----EEEecCCCC------CceEE
Q 001163 538 YDNLGSRVDYDAPGHSSTMMAYSA---DGARLFSCGTNKEGESYLVEWNESEGAV-----KRTYHGLGK------RSVGV 603 (1134)
Q Consensus 538 ~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~~~~~~~~i~~wd~~~~~~-----~~~~~~~~~------~~v~~ 603 (1134)
.........+.... ++..+.+.| +-...+..+.+. ...+.......... +.++..+.. ..-.+
T Consensus 89 ~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~--~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~ 165 (792)
T KOG1963|consen 89 WSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVED--YSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKS 165 (792)
T ss_pred CCCcEEEEEEecCC-ceeEEEechhHhCccceeEeeccc--ceeeeecccccccceeeeEeeeccccchhhhhhhcCCcc
Confidence 98877766655433 333333322 111122111100 00011111111111 111111100 01345
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEE--ecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEe
Q 001163 604 VQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI--DADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTV 681 (1134)
Q Consensus 604 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 681 (1134)
+.+++.+.+....- +..+.+|+..++...... ....|.-.+++.++||+++++|++..||.|.+|.--..
T Consensus 166 I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------- 237 (792)
T KOG1963|consen 166 IVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------- 237 (792)
T ss_pred EEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-------
Confidence 77777776655554 467889988875521111 11123444789999999999999999999999963220
Q ss_pred ccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCC
Q 001163 682 ESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITE 761 (1134)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~ 761 (1134)
. ..+-+..+|.
T Consensus 238 ~---------------------------------------------------------------~~~~t~t~lH------ 248 (792)
T KOG1963|consen 238 S---------------------------------------------------------------DDSETCTLLH------ 248 (792)
T ss_pred c---------------------------------------------------------------cccccceEEE------
Confidence 0 0001122221
Q ss_pred ccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCC
Q 001163 762 PSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTN 841 (1134)
Q Consensus 762 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 841 (1134)
-|...|.+++|+++|.+|++|+..+.+.+|.+.+ ++. ..++.
T Consensus 249 ------------WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T----------------------~~k--qfLPR-- 290 (792)
T KOG1963|consen 249 ------------WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET----------------------GKK--QFLPR-- 290 (792)
T ss_pred ------------ecccccceeEEecCCceEeecccceEEEEEeecC----------------------CCc--ccccc--
Confidence 2788999999999999999999999999997653 321 11333
Q ss_pred CCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCC-----------CCCeEEEEEcCCCCcEEEEEeCCCcE
Q 001163 842 PEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPP-----------PPAATFLAFHPQDNNIIAIGMEDSSI 909 (1134)
Q Consensus 842 h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~-----------~~~v~~l~~sp~~~~~la~g~~dg~i 909 (1134)
-.++|..+.+|||+.+.+... |++|.+....+.+...++.+. .+-.+.++++| ..+.++..+..|.|
T Consensus 291 Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~v 369 (792)
T KOG1963|consen 291 LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHV 369 (792)
T ss_pred cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceE
Confidence 678999999999999888776 999999988776666555432 22367789998 67788888999999
Q ss_pred EEEEcccceEEEecc-----------CccCceEEEEEeeCCCEEEEEeC--------CC--cEEEEECCCCccccceeee
Q 001163 910 QIYNVRVDEVKTKLK-----------GHQKRITGLAFSNTLNVLVSSGA--------DS--QLCVWSTDGWEKQASKFLT 968 (1134)
Q Consensus 910 ~iwd~~~~~~~~~l~-----------~h~~~V~~l~~s~d~~~l~s~s~--------Dg--~i~iwd~~~~~~~~~~~~~ 968 (1134)
++||+.+.+.+..+. .+.-.+++++.+-.|.+++|.-. || .+++|-.......-.....
T Consensus 370 Q~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~ 449 (792)
T KOG1963|consen 370 QFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTK 449 (792)
T ss_pred EEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEE
Confidence 999998876654442 12345788888888999998732 33 4788987765544444445
Q ss_pred ecCCCCCCCCCceEEEEcCCCC-EEEE-EeeceEEEEeCCCcccce--------eeccCCCccCEEEEEEccCCCEEEEE
Q 001163 969 IPNGRTASALADTRVQFHLDQT-HLLA-VHETQIAIYEAPKLECLK--------QFVPREASGPITHATYSCDSQSIYVA 1038 (1134)
Q Consensus 969 ~~~~~~~~~~~v~~l~fs~dg~-~l~~-~~d~~i~iwd~~~~~~~~--------~~~~~~h~~~v~~~~~s~dg~~l~s~ 1038 (1134)
+...|.. ..+..+.+++-.. +.++ +.||.++||-....+.+. .....-|..++++++||.||..|+ +
T Consensus 450 I~~PH~~--~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~ 526 (792)
T KOG1963|consen 450 INNPHGN--AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-V 526 (792)
T ss_pred EecCCCc--eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-E
Confidence 5555553 2233333333333 4555 699999999884333221 111124688999999999997666 5
Q ss_pred ecCCcEEEeecCC-CcceeecCCCcccCCCCCCCceeEEEEecCC-CCCEEEEEecCCcEEEEeCCCCCCCccC
Q 001163 1039 FEEGSVGVLTAST-LRLRCRINPTAYLPTNPSLRVYPLVIAGNPT-DPNQFALGLTDGGVYIIEPLEAEGRWGT 1110 (1134)
Q Consensus 1039 s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~-~~~~l~s~~~Dg~v~vW~~~~~~~~~~~ 1110 (1134)
+.|++|.+||..+ .++.+...... .+. ..+ +|..+ -....++...-+.+.+|++.+....|..
T Consensus 527 s~~~~Itiwd~~~~~~l~~~~~~~~-~~~------~~~--~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w~~ 591 (792)
T KOG1963|consen 527 SFDDTITIWDYDTKNELLCTEGSRN-WPI------AEL--LFTAQTQNDGALVHATQQRLSVWNLLSMSLIWNL 591 (792)
T ss_pred ecCCEEEEecCCChhhhhccccccc-cch------HhH--hhhcccccccceeeccCceEehHhhhhhheecch
Confidence 5688999999998 55555444222 111 111 11110 1223444555678999999999999933
No 121
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.6e-23 Score=203.38 Aligned_cols=271 Identities=18% Similarity=0.277 Sum_probs=214.5
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
..+.|++|.|+|.+..|| +++-||++++||+...+... .-.|+.++.+++|.+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~LL-vssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLL-VSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCcEE-EEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 357899999999988765 55699999999998875433 235899999999987 66789
Q ss_pred EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEe
Q 001163 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC 514 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 514 (1134)
+|+-||.|+.+|+.++.... +..|..+|.|+.+++... .+++||.|++|++||.+.......+.. ...|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEecccccccccccc-CceEEEEe
Confidence 99999999999999987554 778999999999998776 699999999999999887666655553 34788885
Q ss_pred ccccCCccEEEEecCCCcEEEEecCCCCceeeecC--CCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC--CeeE
Q 001163 515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA--PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE--GAVK 590 (1134)
Q Consensus 515 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~~~ 590 (1134)
. .++.|+.|+.|..|.+||+++......... -...++++++-|++.-.++++.+ |...+-.+|... .+..
T Consensus 143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSie--GRVavE~~d~s~~~~skk 216 (323)
T KOG1036|consen 143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIE--GRVAVEYFDDSEEAQSKK 216 (323)
T ss_pred c----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeec--ceEEEEccCCchHHhhhc
Confidence 4 336899999999999999998765553222 22378999999988777777664 344455555441 1333
Q ss_pred EEecCCCC--------CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEEC
Q 001163 591 RTYHGLGK--------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTN 662 (1134)
Q Consensus 591 ~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~ 662 (1134)
..|+.|.. .+|++++|+|-...|++|+.||.|.+||+.+.+.+..+... ...|..++|+.+|..||+++.
T Consensus 217 yaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 217 YAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEec
Confidence 44555532 26889999999999999999999999999999988888654 557999999999999999874
No 122
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=6.9e-23 Score=233.12 Aligned_cols=228 Identities=15% Similarity=0.232 Sum_probs=181.1
Q ss_pred EeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecC-CCceEEEEEeCCCeEEEEECCCCc--------eeEEecCC
Q 001163 436 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP-NKQLSVVTCGEDRVIKVWDAVTGT--------KQYIFEGH 506 (1134)
Q Consensus 436 ~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~-~~~~~l~s~s~d~~i~iwd~~~~~--------~~~~~~~h 506 (1134)
|+.++.|++|+......+ ..+.+|.+.|.+++|+|+ +. +|+||+.|++|+|||+.++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~v---~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPV---IKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCceE---EEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 567889999998765433 368899999999999997 55 79999999999999998642 34567899
Q ss_pred CcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC
Q 001163 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 586 (1134)
Q Consensus 507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 586 (1134)
...|.+++|+|... .++++++.|++|++||+++......+. +...|.+++|+|+|.+|++++.+ ..|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D----~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVG----KHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecC----CEEEEEECCC
Confidence 99999999987642 456899999999999999877666554 45689999999999999988754 3599999999
Q ss_pred CeeEEEecCCCCCc----eEEEEEcCCCCEEEEEeCCC----eEEEEEcCC-CceeEEEecCCCCCCcceEEEcCCCcEE
Q 001163 587 GAVKRTYHGLGKRS----VGVVQFDTTKNRFLAAGDEF----MIKFWDMDN-VNLLASIDADGGLQASPCIRFNKEGILL 657 (1134)
Q Consensus 587 ~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp~~~~l 657 (1134)
++.+..+.+|.... +....|++++.++++++.|+ .|++||+++ ++++..+..+.....+......++|.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999887622 12234568899999988664 799999995 6677766655444333334445568899
Q ss_pred EEEECCCcEEEEEccCC
Q 001163 658 AVSTNDNGIKILANADG 674 (1134)
Q Consensus 658 ~~~~~dg~i~iw~~~~~ 674 (1134)
++|+.|+.|++|++..+
T Consensus 279 lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEECCCeEEEEEccCC
Confidence 99999999999999765
No 123
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.1e-20 Score=206.08 Aligned_cols=278 Identities=14% Similarity=0.208 Sum_probs=223.8
Q ss_pred eecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCcc-ceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCC
Q 001163 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRE-RIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT 431 (1134)
Q Consensus 353 ~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~ 431 (1134)
..|..+-+.|+|.|+|. ++.+++.||.|++|+..... ... .+.-++..|.+++. ++.
T Consensus 10 yaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~-------------------ti~~~g~~v~~ia~--~s~ 67 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPE-------------------TIDISGELVSSIAC--YSN 67 (933)
T ss_pred hhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCc-------------------hhhccCceeEEEee--ccc
Confidence 35888899999999999 66889999999999986652 211 12237778888776 455
Q ss_pred EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEE
Q 001163 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 511 (1134)
Q Consensus 432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~ 511 (1134)
+|++|+.+++|.+|.+.+++.-. .+...+-++++++|+.+|+ +++.||.|-.|++-++.+......+++|.++|.
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl 142 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL 142 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCcee
Confidence 99999999999999999876432 2445667899999999999 899999999999999999999999999999999
Q ss_pred EEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCC--------CCCeeEEEECcCCCEEEEEecCCCCCeEEEEEe
Q 001163 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP--------GHSSTMMAYSADGARLFSCGTNKEGESYLVEWN 583 (1134)
Q Consensus 512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 583 (1134)
++.|+| ++.+|++.+-||.|++||+.++.....+..- ...+..++|+|+|..++..+.+ ..|.+|+
T Consensus 143 ~l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d----~~Vkvy~ 216 (933)
T KOG1274|consen 143 QLSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD----NTVKVYS 216 (933)
T ss_pred eeeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC----CeEEEEc
Confidence 999865 4489999999999999999977665544321 2256779999997777766654 3599999
Q ss_pred CCCCeeEEEecCCCCC-ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEEC
Q 001163 584 ESEGAVKRTYHGLGKR-SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTN 662 (1134)
Q Consensus 584 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~ 662 (1134)
...+.....+...... .+..+.|+|.|.||++++.+|.|.|||.++-+. |.....|.|++|.|+.+.+-.-..
T Consensus 217 r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 217 RKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred cCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEee
Confidence 9999998888765433 388899999999999999999999999998222 344668999999999887766555
Q ss_pred CCcEEEE
Q 001163 663 DNGIKIL 669 (1134)
Q Consensus 663 dg~i~iw 669 (1134)
.|...+|
T Consensus 291 ~g~~~~~ 297 (933)
T KOG1274|consen 291 LGTLGVS 297 (933)
T ss_pred ccccccC
Confidence 5555554
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=3.8e-24 Score=220.71 Aligned_cols=293 Identities=16% Similarity=0.201 Sum_probs=232.2
Q ss_pred eeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163 348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1134)
Q Consensus 348 ~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (1134)
+.+++|.|..-|.++++|...+++ .||+. |.|+|||+....... ...+.. ......-|.++..+
T Consensus 411 rq~~tL~HGEvVcAvtIS~~trhV-yTgGk-gcVKVWdis~pg~k~-------------PvsqLd-cl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTRHV-YTGGK-GCVKVWDISQPGNKS-------------PVSQLD-CLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCccee-EecCC-CeEEEeeccCCCCCC-------------cccccc-ccCcccceeeeEec
Confidence 456778899999999999999864 67765 779999996542110 001111 22346789999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCC
Q 001163 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 507 (1134)
Q Consensus 428 pd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~ 507 (1134)
|||+.|++|+.-.++.|||+..... +....+..-.-...+++.+||.+ +.+++..||.|.|||+.+...++.|.||.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 9999999999999999999987652 22223333334577899999999 89999999999999999999999999999
Q ss_pred cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC
Q 001163 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (1134)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 587 (1134)
..+.||.++ .+|..|.+|+.|.+||.||++.+........ ...|.++.++|++.+++++-.+. .+.+.... +
T Consensus 552 DGascIdis--~dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMens----~vevlh~s-k 623 (705)
T KOG0639|consen 552 DGASCIDIS--KDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGMENS----NVEVLHTS-K 623 (705)
T ss_pred CCceeEEec--CCCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecccC----cEEEEecC-C
Confidence 999999884 5668999999999999999998776654433 45899999999999999986543 25444432 3
Q ss_pred eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEE
Q 001163 588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK 667 (1134)
Q Consensus 588 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~ 667 (1134)
.....+..|.. .|.++.|.+.|+++++.+.|..+..|...-|..+..... ...|.++.++.|.+++++|+.|....
T Consensus 624 p~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 624 PEKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred ccceeeccccc-EEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceE
Confidence 33344455554 899999999999999999999999999998887776643 56899999999999999999999888
Q ss_pred EEEc
Q 001163 668 ILAN 671 (1134)
Q Consensus 668 iw~~ 671 (1134)
+|.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8865
No 125
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=1.2e-22 Score=196.18 Aligned_cols=318 Identities=15% Similarity=0.230 Sum_probs=237.2
Q ss_pred cceeeeEeCCCCCCcccccCCCCCceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeec
Q 001163 323 VNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWEL 402 (1134)
Q Consensus 323 ~~i~~~~~s~~~~~l~~~~~d~~~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~ 402 (1134)
++|+.++.+++... .-.|.+.|+++.+.+...+++.+|+.||.|.+||+++........+ .-.
T Consensus 25 rRil~L~Ln~d~d~---------------~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l--i~k 87 (397)
T KOG4283|consen 25 RRILSLQLNNDKDF---------------VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL--IAK 87 (397)
T ss_pred hhhheeeccCCcce---------------eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc--eeh
Confidence 45667777776422 2348899999999997555778999999999999987542211000 000
Q ss_pred cccCccccccccccCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCC-ceEE
Q 001163 403 GACSMPLQASLSSDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK-QLSV 480 (1134)
Q Consensus 403 ~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~-~~~l 480 (1134)
..|....+ --.+|.-.|..+.|-| |...+.+++.|.+++|||.++-+... .++ -++.|.+-+|||-.. ..++
T Consensus 88 ~~c~v~~~--h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~---~F~-me~~VYshamSp~a~sHcLi 161 (397)
T KOG4283|consen 88 HKCIVAKQ--HENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAV---DFK-MEGKVYSHAMSPMAMSHCLI 161 (397)
T ss_pred eeeecccc--CCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeE---Eee-cCceeehhhcChhhhcceEE
Confidence 11211111 2478999999999999 77788999999999999999977554 222 456788888888654 4478
Q ss_pred EEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCC-Cceeee------------
Q 001163 481 VTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVDY------------ 547 (1134)
Q Consensus 481 ~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~------------ 547 (1134)
++|..|-.|++.|+.+|.+-+++.||.+.|.++.|+|..+ -.|++|+.||.|++||++.. ++...+
T Consensus 162 A~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~ 240 (397)
T KOG4283|consen 162 AAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK 240 (397)
T ss_pred EEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCcccc
Confidence 8888889999999999999999999999999999998765 67899999999999998754 222222
Q ss_pred --cCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecC---CCC--CceEEEEEcCCCCEEEEEeCCC
Q 001163 548 --DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG---LGK--RSVGVVQFDTTKNRFLAAGDEF 620 (1134)
Q Consensus 548 --~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~~~--~~v~~~~~~~~~~~l~~~~~dg 620 (1134)
..|.+.+..++|+.++.++++++.+. .+++|+..+|+-...-.+ +.+ ..-..+. +.+...++.--.++
T Consensus 241 ~n~ah~gkvngla~tSd~~~l~~~gtd~----r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~ 315 (397)
T KOG4283|consen 241 TNTAHYGKVNGLAWTSDARYLASCGTDD----RIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDG 315 (397)
T ss_pred ccccccceeeeeeecccchhhhhccCcc----ceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCC
Confidence 23455789999999999999998643 599999998853221111 111 0111122 33344455555679
Q ss_pred eEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163 621 MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (1134)
Q Consensus 621 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 671 (1134)
.+.++++-.+..+..+..| ...+.|.++.|+-+...++..|+.+..|..
T Consensus 316 ~lall~~~sgs~ir~l~~h--~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 316 SLALLNLLEGSFVRRLSTH--LKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eEEEEEccCceEEEeeecc--cceeeEEeecCchhhhhccccCCccccccc
Confidence 9999999999999999977 568999999999999999999999999976
No 126
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=5.2e-23 Score=212.13 Aligned_cols=265 Identities=14% Similarity=0.234 Sum_probs=212.7
Q ss_pred eeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163 348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1134)
Q Consensus 348 ~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (1134)
+..+.+.|.+.|+.+.+-|....++|+++..+.|.|||...-.-.... .+.-.+...+.||+..=+.++|+
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn 186 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWN 186 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeecccccccccc
Confidence 345567799999999999999999999999999999998764432210 00111222478999988999999
Q ss_pred C-CCCEEEEEeCCCEEEEEEccCCce----eeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECC--CCcee
Q 001163 428 P-DGTLFGVAYSKHIVHLYTYHGGDE----LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV--TGTKQ 500 (1134)
Q Consensus 428 p-d~~~las~s~dg~v~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~--~~~~~ 500 (1134)
+ ..-.|++|+.|++|++||+..... +.....+.+|+..|..++|++-... ++++++.|+.+.|||++ +.++.
T Consensus 187 ~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 187 RQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPS 265 (422)
T ss_pred cccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCc
Confidence 9 556899999999999999976443 4555678999999999999998777 79999999999999999 56667
Q ss_pred EEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCc-eeeecCCCCCeeEEEECcCCCEE-EEEecCCCCCeE
Q 001163 501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-RVDYDAPGHSSTMMAYSADGARL-FSCGTNKEGESY 578 (1134)
Q Consensus 501 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~~~~~~ 578 (1134)
....+|.++|+|++|+|-. +.+||+||.|++|.+||+++... ...+..|...|..+.|+|....+ ++++. ++.
T Consensus 266 ~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~----D~r 340 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT----DRR 340 (422)
T ss_pred ccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc----CCc
Confidence 7888999999999998865 48999999999999999998654 45678888899999999987655 44443 446
Q ss_pred EEEEeCCCC--------------eeEEEecCCCCCceEEEEEcCCCCEEE-EEeCCCeEEEEEcC
Q 001163 579 LVEWNESEG--------------AVKRTYHGLGKRSVGVVQFDTTKNRFL-AAGDEFMIKFWDMD 628 (1134)
Q Consensus 579 i~~wd~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~ 628 (1134)
+.+||+..- +++..-.||.. .|..+.|+|...+++ +.++|+.+.||.+.
T Consensus 341 l~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 341 LNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EEEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 999998642 22345556665 899999999987655 56699999999975
No 127
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=3.3e-23 Score=213.90 Aligned_cols=282 Identities=12% Similarity=0.141 Sum_probs=226.5
Q ss_pred ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163 775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 854 (1134)
Q Consensus 775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d 854 (1134)
|..-|.++++|...+.+.+|+. |.|+|||+.... +...+. .+.+......|+.+.+.||
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg-------------------~k~Pvs-qLdcl~rdnyiRSckL~pd 476 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPG-------------------NKSPVS-QLDCLNRDNYIRSCKLLPD 476 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCC-------------------CCCccc-cccccCcccceeeeEecCC
Confidence 7888999999999998888775 689999987531 111100 1222225678899999999
Q ss_pred CCeEEEee-CCeEEEEEccCCe--EEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceE
Q 001163 855 DSYVMSAS-GGKISLFNMMTFK--TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRIT 931 (1134)
Q Consensus 855 g~~la~~s-dg~i~lwd~~~~~--~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~ 931 (1134)
|+.|++|+ -.++.|||+..-. ...++......+.+++.+| |.++.+++..||.|.|||+.+...++.|+||.+.+.
T Consensus 477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence 99999998 5789999997544 3334444446788999999 899999999999999999999999999999999999
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCccc
Q 001163 932 GLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLEC 1010 (1134)
Q Consensus 932 ~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~ 1010 (1134)
||.+++||..|.|||-|.+|+-||+..++... ..... +.|.++...|.+.+|++| .++.+.|......+.
T Consensus 556 cIdis~dGtklWTGGlDntvRcWDlregrqlq-----qhdF~----SQIfSLg~cP~~dWlavGMens~vevlh~skp~k 626 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ-----QHDFS----SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK 626 (705)
T ss_pred eEEecCCCceeecCCCccceeehhhhhhhhhh-----hhhhh----hhheecccCCCccceeeecccCcEEEEecCCccc
Confidence 99999999999999999999999999866322 11111 568999999999999998 667888887764443
Q ss_pred ceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEE
Q 001163 1011 LKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALG 1090 (1134)
Q Consensus 1011 ~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~ 1090 (1134)
.++ .-|.+.|.++.|++.|+++++.+.|+.+-.|...-|..+.... -++.|.+..|++ |.+++++|
T Consensus 627 -yql--hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk--------E~SsVlsCDIS~---ddkyIVTG 692 (705)
T KOG0639|consen 627 -YQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--------ESSSVLSCDISF---DDKYIVTG 692 (705)
T ss_pred -eee--cccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc--------ccCcceeeeecc---CceEEEec
Confidence 222 3689999999999999999999999999999999888775544 246688887764 67999999
Q ss_pred ecCCcEEEEeC
Q 001163 1091 LTDGGVYIIEP 1101 (1134)
Q Consensus 1091 ~~Dg~v~vW~~ 1101 (1134)
+.|..--||.+
T Consensus 693 SGdkkATVYeV 703 (705)
T KOG0639|consen 693 SGDKKATVYEV 703 (705)
T ss_pred CCCcceEEEEE
Confidence 99988888765
No 128
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.3e-22 Score=223.90 Aligned_cols=285 Identities=16% Similarity=0.178 Sum_probs=219.4
Q ss_pred cccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcC
Q 001163 774 LTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK 853 (1134)
Q Consensus 774 ~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~ 853 (1134)
.|....+.++|.|+|.+|++++.||.|++|+..... +....+. . +...|.+++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~------------------e~P~ti~--~----~g~~v~~ia~-- 64 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE------------------EEPETID--I----SGELVSSIAC-- 64 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc------------------cCCchhh--c----cCceeEEEee--
Confidence 377788999999999999999999999999755311 1111111 1 4455666655
Q ss_pred CCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEE
Q 001163 854 NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITG 932 (1134)
Q Consensus 854 dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~ 932 (1134)
++.++++++ +++|.+|.+.+++.-..+....-++++++|+. +|+++|.|++|-.|++.+..+......+++|.++|.+
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence 445888888 89999999988876655555667899999999 9999999999999999999999989999999999999
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcccc
Q 001163 933 LAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECL 1011 (1134)
Q Consensus 933 l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~ 1011 (1134)
|.|+|.+.+||+.+.||.|++||++++....................+..++|+|+|..+++ +.|+.|.+|+..+.+..
T Consensus 144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ 223 (933)
T ss_pred eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence 99999999999999999999999998765442221111111111245788999999555555 89999999999999998
Q ss_pred eeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEe
Q 001163 1012 KQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGL 1091 (1134)
Q Consensus 1012 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~ 1091 (1134)
..+....|...+..+.|||+|+|||+++.||.|.|||.++-+. ... ...|.. ++|.| +.+-+-...
T Consensus 224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~~~----------~~~Vc~--~aw~p-~~n~it~~~ 289 (933)
T KOG1274|consen 224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-HEF----------KRAVCC--EAWKP-NANAITLIT 289 (933)
T ss_pred eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-ccc----------cceeEE--EecCC-CCCeeEEEe
Confidence 8888766777799999999999999999999999999998322 111 133444 48888 455555555
Q ss_pred cCCcEEEE
Q 001163 1092 TDGGVYII 1099 (1134)
Q Consensus 1092 ~Dg~v~vW 1099 (1134)
.-|+.-+|
T Consensus 290 ~~g~~~~~ 297 (933)
T KOG1274|consen 290 ALGTLGVS 297 (933)
T ss_pred eccccccC
Confidence 55554444
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.5e-22 Score=208.78 Aligned_cols=225 Identities=14% Similarity=0.151 Sum_probs=191.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECC-
Q 001163 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV- 495 (1134)
Q Consensus 417 h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~- 495 (1134)
-.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+|+.|+.||. +|+|||.||.|.+|++.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTD 154 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEe
Confidence 45689999999999999999999999999999999876 5789999999999999999 89999999999999864
Q ss_pred --------CCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEE
Q 001163 496 --------TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF 567 (1134)
Q Consensus 496 --------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 567 (1134)
+-++++.|..|.-+|+++...+.+-..+++++|.|.++++||+..+.....+.. ...+.+++++|-++.++
T Consensus 155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~y 233 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVY 233 (476)
T ss_pred ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEE
Confidence 336778899999999999987765567999999999999999998776666554 45789999999999999
Q ss_pred EEecCCCCCeEEEEEeCCC----------------CeeEEEecCCCC-CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 001163 568 SCGTNKEGESYLVEWNESE----------------GAVKRTYHGLGK-RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV 630 (1134)
Q Consensus 568 ~~~~~~~~~~~i~~wd~~~----------------~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 630 (1134)
+|+.++ .|.+.++.. +..+..+.+|.+ ..|++++++-||..|++|+.||.++|||..+.
T Consensus 234 iGt~~G----~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 234 IGTEEG----KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred ecCCcc----eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 987643 466655432 234566777765 58999999999999999999999999999999
Q ss_pred ceeEEEecCCCCCCcceEEEcCC
Q 001163 631 NLLASIDADGGLQASPCIRFNKE 653 (1134)
Q Consensus 631 ~~~~~~~~~~~~~~v~~v~~sp~ 653 (1134)
++++++... .++|+.+.+.|-
T Consensus 310 Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 310 QCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred HHHHHHhhh--ccccceeEeecc
Confidence 999988743 567888888764
No 130
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.2e-22 Score=194.45 Aligned_cols=297 Identities=13% Similarity=0.174 Sum_probs=220.5
Q ss_pred CCceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEE
Q 001163 345 LPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 424 (1134)
Q Consensus 345 ~~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 424 (1134)
.|.++..++.+.. -.|+.||+.|. ++|+|..||.|.|||+.+...-+ ++.+|..+|+++
T Consensus 13 ~PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~sl 71 (405)
T KOG1273|consen 13 YPEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITSL 71 (405)
T ss_pred ChHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchhh-------------------hhhccccceeEE
Confidence 3456667777666 88999999998 56999999999999998865322 478999999999
Q ss_pred EEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEec
Q 001163 425 MWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE 504 (1134)
Q Consensus 425 ~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 504 (1134)
+||+||++|+++|.|..|.+||+..|..++... ...+|+.+.|+|...+..++ +-.+..-.+-++..++...--.
T Consensus 72 ~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir----f~spv~~~q~hp~k~n~~va-~~~~~sp~vi~~s~~~h~~Lp~ 146 (405)
T KOG1273|consen 72 CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR----FDSPVWGAQWHPRKRNKCVA-TIMEESPVVIDFSDPKHSVLPK 146 (405)
T ss_pred EecCCCCEeeeecCCceeEEEeccCCCceeEEE----ccCccceeeeccccCCeEEE-EEecCCcEEEEecCCceeeccC
Confidence 999999999999999999999999999776432 56789999999987763444 4444445555555432211111
Q ss_pred CCCcC--EEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC-CCeeEEEECcCCCEEEEEecCCCCCeEEEE
Q 001163 505 GHESP--VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG-HSSTMMAYSADGARLFSCGTNKEGESYLVE 581 (1134)
Q Consensus 505 ~h~~~--v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 581 (1134)
...+. +..-+-.++..|+++++|...|.+.++|..+.++...+.... ..|..+.++..|+.++..+.| ..|+.
T Consensus 147 d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsD----RvIR~ 222 (405)
T KOG1273|consen 147 DDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSD----RVIRT 222 (405)
T ss_pred CCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCC----ceEEE
Confidence 11111 111111235667999999999999999999988887776655 688999999999999998764 46999
Q ss_pred EeCCCC-------ee--EEEecC-CCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEE
Q 001163 582 WNESEG-------AV--KRTYHG-LGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRF 650 (1134)
Q Consensus 582 wd~~~~-------~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 650 (1134)
|+++.- ++ .+++.. -....-.+++|+.+|.++++++ ....++||....|.+++.+.+..+ .....+.|
T Consensus 223 ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~DV~w 301 (405)
T KOG1273|consen 223 YEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELLDVNW 301 (405)
T ss_pred EehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hheeeccc
Confidence 987621 11 111111 0111345689999999999888 556899999999999999976543 35678999
Q ss_pred cCCCcEEEEEECCCcEEEEEccC
Q 001163 651 NKEGILLAVSTNDNGIKILANAD 673 (1134)
Q Consensus 651 sp~~~~l~~~~~dg~i~iw~~~~ 673 (1134)
+|-...+++- ..|.+++|....
T Consensus 302 hp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 302 HPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred ccceeeeeec-cCCceEEEEeec
Confidence 9988888777 789999998654
No 131
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.8e-22 Score=204.25 Aligned_cols=289 Identities=13% Similarity=0.217 Sum_probs=234.0
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCC-EE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT-LF 433 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~l 433 (1134)
..++|++|.|+|.-. ++.+++.||+++||.++........++ .--..+|.+.+|.|+|. .+
T Consensus 212 s~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS~-----------------~l~~fPi~~a~f~p~G~~~i 273 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQSI-----------------HLEKFPIQKAEFAPNGHSVI 273 (514)
T ss_pred CcCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhheee-----------------eeccCccceeeecCCCceEE
Confidence 357999999999998 678999999999999976543221111 12356999999999999 89
Q ss_pred EEEeCCCEEEEEEccCCceeeeeeeeecCC-CCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEE
Q 001163 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 512 (1134)
Q Consensus 434 as~s~dg~v~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 512 (1134)
++++.....+.||+.+.+.. +...+.++. ..+.....+++++ +|+..|..|.|.+....+++.+.+++ -.+.|..
T Consensus 274 ~~s~rrky~ysyDle~ak~~-k~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~ 349 (514)
T KOG2055|consen 274 FTSGRRKYLYSYDLETAKVT-KLKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSD 349 (514)
T ss_pred EecccceEEEEeeccccccc-cccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEee
Confidence 99999999999999998744 344456665 3577888899999 89999999999999999999999887 5678999
Q ss_pred EeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCC-CeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC-----
Q 001163 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH-SSTMMAYSADGARLFSCGTNKEGESYLVEWNESE----- 586 (1134)
Q Consensus 513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----- 586 (1134)
++|+ .++..|++++.+|.|.+||++...+...+...+. .-++++.++++.++++|+. .+.|-|||..+
T Consensus 350 ~~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~ 423 (514)
T KOG2055|consen 350 FTFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFAST 423 (514)
T ss_pred EEEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccC
Confidence 9986 5558898899999999999999887777766554 5578888999999999975 44689999653
Q ss_pred -CeeEEEecCCCCCceEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCceeEEEecC-CCCCCcceEEEcCCCcEEEEEEC
Q 001163 587 -GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDAD-GGLQASPCIRFNKEGILLAVSTN 662 (1134)
Q Consensus 587 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~~~~~ 662 (1134)
.+++..+..-.. .|+++.|+++...|+.++ .+..+++-++.+......++.. ...+.|+|++|+|.+.++|.|..
T Consensus 424 ~PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 424 NPKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE 502 (514)
T ss_pred CCCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence 356666655554 799999999999999888 5678999998877666555432 23456899999999999999999
Q ss_pred CCcEEEEEcc
Q 001163 663 DNGIKILANA 672 (1134)
Q Consensus 663 dg~i~iw~~~ 672 (1134)
+|.+.+|.+.
T Consensus 503 ~grv~l~kL~ 512 (514)
T KOG2055|consen 503 AGRVHLFKLH 512 (514)
T ss_pred CCceeeEeec
Confidence 9999999864
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6.1e-22 Score=204.29 Aligned_cols=294 Identities=16% Similarity=0.209 Sum_probs=218.9
Q ss_pred CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCC
Q 001163 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654 (1134)
Q Consensus 576 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 654 (1134)
...+.+||+++|....+|++.....-.++..- .+.+++++. .-..|.+|.+.......... --.+.|.+++-+|+|
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~--v~Pg~v~al~s~n~G 93 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYI--VLPGPVHALASSNLG 93 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhc--ccccceeeeecCCCc
Confidence 34489999999999999987632122222211 235777766 55689999998766555222 224578999999999
Q ss_pred cEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCc
Q 001163 655 ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSR 734 (1134)
Q Consensus 655 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 734 (1134)
.+|+.|+..|.|++|.+.+| .++..+
T Consensus 94 ~~l~ag~i~g~lYlWelssG-~LL~v~----------------------------------------------------- 119 (476)
T KOG0646|consen 94 YFLLAGTISGNLYLWELSSG-ILLNVL----------------------------------------------------- 119 (476)
T ss_pred eEEEeecccCcEEEEEeccc-cHHHHH-----------------------------------------------------
Confidence 99999999999999999988 222221
Q ss_pred cCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCccc
Q 001163 735 NFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTG 814 (1134)
Q Consensus 735 ~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~ 814 (1134)
..|...|+++.|+.||..+++++.||.|.+|.+..-....+.
T Consensus 120 --------------------------------------~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~ 161 (476)
T KOG0646|consen 120 --------------------------------------SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADND 161 (476)
T ss_pred --------------------------------------HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccC
Confidence 128889999999999999999999999999987632100000
Q ss_pred ccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCC--CeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEE
Q 001163 815 KATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND--SYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLA 891 (1134)
Q Consensus 815 ~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg--~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~ 891 (1134)
.+-..+. .+. .|.-+|+++...+.| .+|++++ |.++++||+..+..+.++. .+..+.+++
T Consensus 162 -------------~~~~p~~-~f~--~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~ 224 (476)
T KOG0646|consen 162 -------------HSVKPLH-IFS--DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVA 224 (476)
T ss_pred -------------CCcccee-eec--cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEE
Confidence 0001111 133 389999999887653 5788888 9999999999999998876 667899999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEEccc----------------ceEEEeccCccC--ceEEEEEeeCCCEEEEEeCCCcEEE
Q 001163 892 FHPQDNNIIAIGMEDSSIQIYNVRV----------------DEVKTKLKGHQK--RITGLAFSNTLNVLVSSGADSQLCV 953 (1134)
Q Consensus 892 ~sp~~~~~la~g~~dg~i~iwd~~~----------------~~~~~~l~~h~~--~V~~l~~s~d~~~l~s~s~Dg~i~i 953 (1134)
.+| .++.+.+|+.+|.|.+.++.. +..+..+.||.+ +|+|++++-||..|++|+.||+|+|
T Consensus 225 lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vcv 303 (476)
T KOG0646|consen 225 LDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCV 303 (476)
T ss_pred Ecc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEE
Confidence 999 899999999999999987643 234567789998 9999999999999999999999999
Q ss_pred EECCCCccccceeeeecCCCCCCCCCceEEEEcCCCC
Q 001163 954 WSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQT 990 (1134)
Q Consensus 954 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~ 990 (1134)
||+.+.+..+.. .... ++|+.+.+.|-.+
T Consensus 304 Wdi~S~Q~iRtl--~~~k------gpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 304 WDIYSKQCIRTL--QTSK------GPVTNLQINPLER 332 (476)
T ss_pred EecchHHHHHHH--hhhc------cccceeEeecccc
Confidence 999986533321 1111 4577788765433
No 133
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.9e-21 Score=190.55 Aligned_cols=243 Identities=16% Similarity=0.126 Sum_probs=188.1
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEEC
Q 001163 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA 494 (1134)
Q Consensus 415 ~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~ 494 (1134)
......|..+.|+|.+..|++++.||++++||+....... .-.|..++.+++|.++.+ +++|+.||.|+.+|+
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDL 82 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEe
Confidence 3457899999999999999999999999999999875332 234999999999998665 899999999999999
Q ss_pred CCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCC
Q 001163 495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKE 574 (1134)
Q Consensus 495 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 574 (1134)
.++.... +..|..+|.||.+.+.. ..+++|+.|++|++||.+.......+.. ...|.++.. .|+.|++++.+
T Consensus 83 n~~~~~~-igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~-- 154 (323)
T KOG1036|consen 83 NTGNEDQ-IGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSD-- 154 (323)
T ss_pred cCCccee-eccCCCceEEEEeeccC--CeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecC--
Confidence 8887654 55699999999987655 5799999999999999986444444333 336766655 46677776643
Q ss_pred CCeEEEEEeCCCCeeEEE-ecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----ceeEEEecCCC-------C
Q 001163 575 GESYLVEWNESEGAVKRT-YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV----NLLASIDADGG-------L 642 (1134)
Q Consensus 575 ~~~~i~~wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-------~ 642 (1134)
..+.+||+++...... ....-+..++++++-|++.-+++++-||.|.+=.++.. +.-..+..|.. .
T Consensus 155 --r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~ 232 (323)
T KOG1036|consen 155 --RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEII 232 (323)
T ss_pred --ceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEE
Confidence 3599999987654332 22222336889999999999999999999988666654 22333333321 2
Q ss_pred CCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 643 QASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 643 ~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
.+|++++|+|-...+++|+.||.|.+||+.+.
T Consensus 233 yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 233 YPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred EEeceeEeccccceEEecCCCceEEEccCcch
Confidence 36899999999899999999999999998766
No 134
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=3.2e-22 Score=206.37 Aligned_cols=253 Identities=18% Similarity=0.277 Sum_probs=204.7
Q ss_pred ccCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEEccCCcee-------eeeeeeecCCCCEEEEEEecCCCceEEEEEeCC
Q 001163 415 SDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDEL-------RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED 486 (1134)
Q Consensus 415 ~~h~~~V~~l~~sp-d~~~las~s~dg~v~iwd~~~~~~~-------~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d 486 (1134)
..|.+.|+.+.+-| +...+|+++..+.|.|||..+-... ++...|.||.+.=.+++|++.... .|++++.|
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~d 199 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSDD 199 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccCC
Confidence 45999999999999 5667788889999999998753322 233368899998889999998766 79999999
Q ss_pred CeEEEEECCCCc-------eeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecC--CCCceeeecCCCCCeeEE
Q 001163 487 RVIKVWDAVTGT-------KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD--NLGSRVDYDAPGHSSTMM 557 (1134)
Q Consensus 487 ~~i~iwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~ 557 (1134)
++|++||+.... ....+.+|...|..++|++... .++++++.|+.+.|||.+ +.+.......|..++.++
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence 999999987543 2456889999999999998765 789999999999999999 455566677788899999
Q ss_pred EECcCCC-EEEEEecCCCCCeEEEEEeCCCC-eeEEEecCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCce--
Q 001163 558 AYSADGA-RLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNL-- 632 (1134)
Q Consensus 558 ~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-- 632 (1134)
+|+|-+. .||+++.| .+|.+||++.- +++.++.+|.. .|..+.|+|.. ..|++++.|+.+.|||+..-..
T Consensus 279 ~fnp~~~~ilAT~S~D----~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 279 AFNPFNEFILATGSAD----KTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred EeCCCCCceEEeccCC----CcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 9999655 55666554 46999999875 57788899987 89999999987 5677777999999999864222
Q ss_pred ----------eEEEecCCCCCCcceEEEcCCC-cEEEEEECCCcEEEEEccCC
Q 001163 633 ----------LASIDADGGLQASPCIRFNKEG-ILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 633 ----------~~~~~~~~~~~~v~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~ 674 (1134)
-..+...||...|..+.|+|+. ..|++.++|+.+.||.....
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 2224455778899999999976 46778899999999987643
No 135
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.2e-22 Score=189.72 Aligned_cols=252 Identities=18% Similarity=0.232 Sum_probs=200.3
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC--CCCE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTL 432 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~~ 432 (1134)
|.+.|..+...--|++ |||++.|++|+|+.+.++.... ....|.||+++|..++|-. -|.+
T Consensus 10 H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~i 72 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGTI 72 (299)
T ss_pred hhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCcE
Confidence 8888888888888985 5999999999999998765311 1113899999999999976 8999
Q ss_pred EEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC---ceeEEecCCCcC
Q 001163 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG---TKQYIFEGHESP 509 (1134)
Q Consensus 433 las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~~h~~~ 509 (1134)
||+++.||.|.||.-.+|+ ..+......|+..|++++|.|.+-.+.|++++.||.|.|.+.++. ........|.-.
T Consensus 73 LAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG 151 (299)
T ss_pred eeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence 9999999999999998884 444556788999999999999988889999999999999987754 122345679999
Q ss_pred EEEEeccccCC-c-----------cEEEEecCCCcEEEEecCCCCc--eeeecCCCCCeeEEEECcCC----CEEEEEec
Q 001163 510 VYSICPHHKEN-I-----------QFIFSTATDGKIKAWLYDNLGS--RVDYDAPGHSSTMMAYSADG----ARLFSCGT 571 (1134)
Q Consensus 510 v~~~~~~~~~~-~-----------~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~~----~~l~~~~~ 571 (1134)
|++++|.|..- | ..|++|+.|..|+||+.+...- ...+..|...|+.++|.|.- .+|++++.
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence 99999987621 1 5699999999999999887532 23367788899999999965 47888876
Q ss_pred CCCCCeEEEEEeCCCC--eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 001163 572 NKEGESYLVEWNESEG--AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD 628 (1134)
Q Consensus 572 ~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 628 (1134)
|+ .+.||....- ....++...-...+..+.|+..|+.|+.++.|+.|.+|.-.
T Consensus 232 Dg----~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 232 DG----TVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CC----cEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 54 5888876521 12222222222378999999999999999999999999754
No 136
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=1e-21 Score=201.70 Aligned_cols=294 Identities=17% Similarity=0.211 Sum_probs=224.2
Q ss_pred cCCCeeEEEEcCCCC-eEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC-CCCE
Q 001163 355 QGSAVKSMDFHPVQQ-ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTL 432 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~-~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~ 432 (1134)
+.+.|++++|+|... .++|+|+.-|.|-+||+.+.+...... .++..|.++|.++.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEecCCChhh
Confidence 789999999999876 799999999999999997444322111 13788999999999999 6678
Q ss_pred EEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce-eEEecCCCcCEE
Q 001163 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK-QYIFEGHESPVY 511 (1134)
Q Consensus 433 las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~ 511 (1134)
+.+.|.||+|++-|++++. ......+..-...+..+.|+.+.. .++.+..=|...+||.+++.. ...+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i-~e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNI-SEEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchh-hHHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 9999999999999998764 222223444556688899998888 577777777999999998765 566777888999
Q ss_pred EEeccccCCccEEEEecCCCcEEEEecCCCCcee----eecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC--
Q 001163 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV----DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES-- 585 (1134)
Q Consensus 512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-- 585 (1134)
+++++|... .++++++.|++.+|||++...... ....|...|.+..|||.+-.|++.+.| ..|++||..
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D----~~IRv~dss~~ 401 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQD----NEIRVFDSSCI 401 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccC----CceEEeecccc
Confidence 999998765 799999999999999998755443 344567799999999998888888764 459999983
Q ss_pred --CCeeEEEecCCCCC----ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcc-eEEEcCCCc-EE
Q 001163 586 --EGAVKRTYHGLGKR----SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASP-CIRFNKEGI-LL 657 (1134)
Q Consensus 586 --~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~sp~~~-~l 657 (1134)
.-.+..++...... ......|.|+.+++++|-.-..|-|+|-..++.+..+-..... .|. -..|+|-+. ++
T Consensus 402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~HP~~~~~~ 480 (498)
T KOG4328|consen 402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFHPMRDTLA 480 (498)
T ss_pred cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeeccccccee
Confidence 23333333322111 2334689999999999998889999999999988776543222 343 458999887 45
Q ss_pred EEEECCCcEEEEEcc
Q 001163 658 AVSTNDNGIKILANA 672 (1134)
Q Consensus 658 ~~~~~dg~i~iw~~~ 672 (1134)
+.++..|.|+||...
T Consensus 481 aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 481 AGGNSSGKIYVFTNK 495 (498)
T ss_pred ccCCccceEEEEecC
Confidence 555567888888643
No 137
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.4e-21 Score=190.81 Aligned_cols=253 Identities=13% Similarity=0.211 Sum_probs=195.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCcee
Q 001163 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ 500 (1134)
Q Consensus 421 V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 500 (1134)
-.|+.||+.|.+||+|..||.|.|||+.+...-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999876433 6889999999999999999 8999999999999999999999
Q ss_pred EEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCC----CeeEEEECcCCCEEEEEecCCCCC
Q 001163 501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH----SSTMMAYSADGARLFSCGTNKEGE 576 (1134)
Q Consensus 501 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~~~~~~ 576 (1134)
+.++ ..++|+...|+|......+++-- +..-.+-++........-....+ .-.+..|.+.|+++++|. +.
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~-~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGt----sK 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIM-EESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGT----SK 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEe-cCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEec----Cc
Confidence 9988 77899999999877655555443 33344555554322221111111 122335889999999985 46
Q ss_pred eEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-------ce--eEEEecCCCCCCcce
Q 001163 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV-------NL--LASIDADGGLQASPC 647 (1134)
Q Consensus 577 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~--~~~~~~~~~~~~v~~ 647 (1134)
+.+.++|..+.+++..++-.....|..+.++..|.+|+.-+.|+.|+.|+...- ++ .+.++.--+...-++
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 679999999999999887766447889999999999999999999999987621 11 111111111223468
Q ss_pred EEEcCCCcEEEEEEC-CCcEEEEEccCCceeEEEeccCc
Q 001163 648 IRFNKEGILLAVSTN-DNGIKILANADGIRLLRTVESRT 685 (1134)
Q Consensus 648 v~~sp~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~ 685 (1134)
++|+.+|.+++.++. ...++||....| .+++.+.|..
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~k 292 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTK 292 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCc
Confidence 999999999987764 578999999888 7888887754
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.9e-21 Score=199.97 Aligned_cols=249 Identities=15% Similarity=0.214 Sum_probs=195.5
Q ss_pred ccccEEEEEEecCCc-eeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcC
Q 001163 775 TAMRVSRLIYTNSGL-AILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK 853 (1134)
Q Consensus 775 ~~~~i~~l~~spdg~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~ 853 (1134)
...+|.+..|.|+|. .+++++.-..++.||+...+. ........-....+....+|+
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~----------------------~k~~~~~g~e~~~~e~FeVSh 313 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV----------------------TKLKPPYGVEEKSMERFEVSH 313 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeecccccc----------------------ccccCCCCcccchhheeEecC
Confidence 356788999999999 888888888899997764322 111111101234677889999
Q ss_pred CCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccC-ceE
Q 001163 854 NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQK-RIT 931 (1134)
Q Consensus 854 dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~-~V~ 931 (1134)
++++|+..+ .|.|.+....+++.+.+++ ..+.|..++|+. +++.|.+.+.+|.|.+||+....+++++....+ .-+
T Consensus 314 d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gt 391 (514)
T KOG2055|consen 314 DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGT 391 (514)
T ss_pred CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCcccee
Confidence 999999998 8999999999999999988 678999999998 888888888999999999999988888864322 235
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEECCCCcccc-ceeeeecCCCCCCCCCceEEEEcCCCCEEEEE---eeceEEEEeCCC
Q 001163 932 GLAFSNTLNVLVSSGADSQLCVWSTDGWEKQA-SKFLTIPNGRTASALADTRVQFHLDQTHLLAV---HETQIAIYEAPK 1007 (1134)
Q Consensus 932 ~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~---~d~~i~iwd~~~ 1007 (1134)
.++.|+++.+||+|+..|.|.|||.++-.... .+.+.....-. ..|+++.|++|+..||.+ .+..+++-.+..
T Consensus 392 s~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 392 SLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred eeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 78889999999999999999999966521110 11111111111 469999999999999983 567899999998
Q ss_pred cccceeeccCC-CccCEEEEEEccCCCEEEEEecCCcEEEeecC
Q 001163 1008 LECLKQFVPRE-ASGPITHATYSCDSQSIYVAFEEGSVGVLTAS 1050 (1134)
Q Consensus 1008 ~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~ 1050 (1134)
......|...+ --+.|+|++|||.|.+|+.|..+|.|.+|.+.
T Consensus 469 ~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 469 CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 88888776543 25689999999999999999999999999863
No 139
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=7.2e-20 Score=202.67 Aligned_cols=276 Identities=11% Similarity=0.056 Sum_probs=202.6
Q ss_pred EEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE-EEEeCCCEEEEEEccC
Q 001163 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF-GVAYSKHIVHLYTYHG 449 (1134)
Q Consensus 371 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l-as~s~dg~v~iwd~~~ 449 (1134)
++++++.|+.|.+||+.+++.+.. +.++ ..+.+++|+|+++.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 678999999999999998876543 2333 346789999999977 5677889999999998
Q ss_pred CceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecC
Q 001163 450 GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT 529 (1134)
Q Consensus 450 ~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 529 (1134)
++... .+..+.. +..++|+|+++. ++++++.|+.+++||+.+++.+..+.. ...+.+++|++ ++.++++++.
T Consensus 63 ~~~~~---~~~~~~~-~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~--dg~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGPD-PELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP--DGKIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCCC-ccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC--CCCEEEEEec
Confidence 87554 3443433 567899999984 345566789999999999888877763 23457777754 5578888877
Q ss_pred CC-cEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCC------CceE
Q 001163 530 DG-KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK------RSVG 602 (1134)
Q Consensus 530 dg-~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~ 602 (1134)
++ .+.+||..+........ .......++|+|+++++++++. .++.|.+||+.+++.+..+..+.. ....
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 56778887655443332 2334577899999998876542 234699999999987776543211 1234
Q ss_pred EEEEcCCCCEEEEE-eCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEE-ECCCcEEEEEccCCceeEEE
Q 001163 603 VVQFDTTKNRFLAA-GDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS-TNDNGIKILANADGIRLLRT 680 (1134)
Q Consensus 603 ~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~~dg~i~iw~~~~~~~~~~~ 680 (1134)
.++|+|++++++++ +.++.+.+||..+++.+..+.. ...+.+++|+|+|++|+++ +.+|.|.+||+.++ .....
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~ 286 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV---GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKS 286 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe---CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence 58899999986554 4677899999999887766542 2367899999999999876 46899999999987 55555
Q ss_pred ec
Q 001163 681 VE 682 (1134)
Q Consensus 681 ~~ 682 (1134)
++
T Consensus 287 ~~ 288 (300)
T TIGR03866 287 IK 288 (300)
T ss_pred EE
Confidence 54
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=2e-19 Score=199.15 Aligned_cols=292 Identities=13% Similarity=0.149 Sum_probs=212.1
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEE-EEecCCCcEEEEecCCCCceeeecCCCCCeeEE
Q 001163 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFI-FSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMM 557 (1134)
Q Consensus 479 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 557 (1134)
+++|++.|+.|++||+.+++.+..+..+.. +.+++|++ ++..+ ++++.++.|++||..+.+....+..+ ..+..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~--dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~ 78 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSK--DGKLLYVCASDSDTIQVIDLATGEVIGTLPSG-PDPELF 78 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECC--CCCEEEEEECCCCeEEEEECCCCcEEEeccCC-CCccEE
Confidence 688999999999999999999998886654 56788765 44555 67788999999999877665544432 345678
Q ss_pred EECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCC-eEEEEEcCCCceeEEE
Q 001163 558 AYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF-MIKFWDMDNVNLLASI 636 (1134)
Q Consensus 558 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~ 636 (1134)
+|+|+++.+++++. .+..+.+||+.+++.+..+.... .+..++|+|++..+++++.++ .+.+||..+++.+..+
T Consensus 79 ~~~~~g~~l~~~~~---~~~~l~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 79 ALHPNGKILYIANE---DDNLVTVIDIETRKVLAEIPVGV--EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred EECCCCCEEEEEcC---CCCeEEEEECCCCeEEeEeeCCC--CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 99999998876543 23469999999988877776432 457799999999999988765 5778899888776655
Q ss_pred ecCCCCCCcceEEEcCCCcEEEEE-ECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccC
Q 001163 637 DADGGLQASPCIRFNKEGILLAVS-TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTS 715 (1134)
Q Consensus 637 ~~~~~~~~v~~v~~sp~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 715 (1134)
... ....+++|+|++++++++ ..++.|++||+.++ .....+..
T Consensus 154 ~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~-------------------------------- 197 (300)
T TIGR03866 154 LVD---QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITF-------------------------------- 197 (300)
T ss_pred EcC---CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeee--------------------------------
Confidence 432 245689999999988655 45899999998765 22211110
Q ss_pred cCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeec
Q 001163 716 LGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA 795 (1134)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~ 795 (1134)
...+.
T Consensus 198 ---------------------------------------------------------------------~~~~~------ 202 (300)
T TIGR03866 198 ---------------------------------------------------------------------EIPGV------ 202 (300)
T ss_pred ---------------------------------------------------------------------ccccc------
Confidence 00000
Q ss_pred cCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEe--eCCeEEEEEccC
Q 001163 796 SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSA--SGGKISLFNMMT 873 (1134)
Q Consensus 796 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~--sdg~i~lwd~~~ 873 (1134)
.. .......++|+||+++++++ .++.+.+||..+
T Consensus 203 ~~--------------------------------------------~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 203 HP--------------------------------------------EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred cc--------------------------------------------ccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 00 00112356788888875544 267899999988
Q ss_pred CeEEEEecCCCCCeEEEEEcCCCCcEEEEE-eCCCcEEEEEcccceEEEeccCccCceEEEEEee
Q 001163 874 FKTMTTFMPPPPAATFLAFHPQDNNIIAIG-MEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSN 937 (1134)
Q Consensus 874 ~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~ 937 (1134)
++....+. +...+.+++|+| ++++|+++ ..+|.|.+||+.+++++.+++.. ...+.++|+|
T Consensus 239 ~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 239 YEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 88776654 445789999999 88888776 56899999999999999888765 5558888865
No 141
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=2e-20 Score=181.07 Aligned_cols=214 Identities=13% Similarity=0.170 Sum_probs=172.8
Q ss_pred cccCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEEccCCceee------------eeeeeecCCCCEEEEEEecCCCceEE
Q 001163 414 SSDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELR------------NHLEIEAHVGSVNDLAFSYPNKQLSV 480 (1134)
Q Consensus 414 ~~~h~~~V~~l~~sp-d~~~las~s~dg~v~iwd~~~~~~~~------------~~~~l~~h~~~V~~v~~s~~~~~~~l 480 (1134)
...|.+.|+++...+ .|+|+++|+.||.|.+||++.....+ ....-.+|.-.|..+.|.|-+.. .+
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG-mF 117 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG-MF 117 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc-ee
Confidence 456999999999999 79999999999999999998644211 11123578899999999997665 78
Q ss_pred EEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCC-ccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEE
Q 001163 481 VTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKEN-IQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAY 559 (1134)
Q Consensus 481 ~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 559 (1134)
.+++.|.+++|||..+-+....|. ..+.|.+-+++|-.. -.++++|..|-.|++.|+..+.....+.+|...|.++.|
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 999999999999999988888776 556677767665543 257788888999999999999999999999999999999
Q ss_pred CcCCCEEEEEecCCCCCeEEEEEeCCCC-eeEEEecCCC-------------CCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 001163 560 SADGARLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLG-------------KRSVGVVQFDTTKNRFLAAGDEFMIKFW 625 (1134)
Q Consensus 560 s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~~dg~i~iw 625 (1134)
+|...+++..+ ..++.+++||++.. -+...+..|. .+.+..++|..++.++++++.|..+++|
T Consensus 197 sp~~e~vLatg---saDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w 273 (397)
T KOG4283|consen 197 SPSSEWVLATG---SADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVW 273 (397)
T ss_pred ccCceeEEEec---CCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEe
Confidence 99998866544 23567999999864 3333333332 2368889999999999999999999999
Q ss_pred EcCCCce
Q 001163 626 DMDNVNL 632 (1134)
Q Consensus 626 d~~~~~~ 632 (1134)
+..+|+.
T Consensus 274 n~~~G~n 280 (397)
T KOG4283|consen 274 NMESGRN 280 (397)
T ss_pred ecccCcc
Confidence 9998764
No 142
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.88 E-value=7e-20 Score=195.44 Aligned_cols=452 Identities=12% Similarity=0.143 Sum_probs=283.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce
Q 001163 420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK 499 (1134)
Q Consensus 420 ~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~ 499 (1134)
.|..++|-|||..|+.+..+ .+.+||...|..+. ++.+|.+.|.|++|+.||+ .++||+.|+.|.+|... -+-
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llq---tLKgHKDtVycVAys~dGk--rFASG~aDK~VI~W~~k-lEG 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSK-LEG 86 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCccccc---ccccccceEEEEEEccCCc--eeccCCCceeEEEeccc-ccc
Confidence 89999999999998888655 59999999998776 7999999999999999999 79999999999999843 333
Q ss_pred eEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEE
Q 001163 500 QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYL 579 (1134)
Q Consensus 500 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 579 (1134)
+..+. |...|.|+.|+|-. ..|++++.. ..-+|..+.... .. ......+.+.+|..||.+++.|-.++ +|
T Consensus 87 ~LkYS-H~D~IQCMsFNP~~--h~LasCsLs-dFglWS~~qK~V-~K-~kss~R~~~CsWtnDGqylalG~~nG----TI 156 (1081)
T KOG1538|consen 87 ILKYS-HNDAIQCMSFNPIT--HQLASCSLS-DFGLWSPEQKSV-SK-HKSSSRIICCSWTNDGQYLALGMFNG----TI 156 (1081)
T ss_pred eeeec-cCCeeeEeecCchH--HHhhhcchh-hccccChhhhhH-Hh-hhhheeEEEeeecCCCcEEEEeccCc----eE
Confidence 33443 99999999998766 778888753 455786543221 11 11234788999999999999987543 57
Q ss_pred EEEeCCCCeeEEEe--cCCCCCceEEEEEcCCC-----CEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC
Q 001163 580 VEWNESEGAVKRTY--HGLGKRSVGVVQFDTTK-----NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (1134)
Q Consensus 580 ~~wd~~~~~~~~~~--~~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 652 (1134)
.+-+- +++....+ ++..+.+|.+++|+|.. ..+++..-..++.++.+. |+.+..-..- .-...|+.+-+
T Consensus 157 siRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L--~FdP~CisYf~ 232 (1081)
T KOG1538|consen 157 SIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRAL--NFDPCCISYFT 232 (1081)
T ss_pred EeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccC--CCCchhheecc
Confidence 66653 34333333 34445589999999975 456666666677777664 4444322211 11346899999
Q ss_pred CCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCC
Q 001163 653 EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND 732 (1134)
Q Consensus 653 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 732 (1134)
+|.++..|+.|+.+.+|.-. | ..+.++.
T Consensus 233 NGEy~LiGGsdk~L~~fTR~-G-vrLGTvg-------------------------------------------------- 260 (1081)
T KOG1538|consen 233 NGEYILLGGSDKQLSLFTRD-G-VRLGTVG-------------------------------------------------- 260 (1081)
T ss_pred CCcEEEEccCCCceEEEeec-C-eEEeecc--------------------------------------------------
Confidence 99999999999999998532 2 1111110
Q ss_pred CccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCC-
Q 001163 733 SRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERN- 811 (1134)
Q Consensus 733 ~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~- 811 (1134)
.....|..++..|+++.++.|+.||++..|++-.....
T Consensus 261 -----------------------------------------~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ 299 (1081)
T KOG1538|consen 261 -----------------------------------------EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHG 299 (1081)
T ss_pred -----------------------------------------ccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhh
Confidence 03467888999999999999999999999887533000
Q ss_pred ---------ccc--------------c---------------cc---cCCCCcccCCCCCcccccCCCCCCCCCCeeEEE
Q 001163 812 ---------STG--------------K---------------AT---TNQAPQLWQPPSGILMTNDISDTNPEDAVPCFA 850 (1134)
Q Consensus 812 ---------~~~--------------~---------------~~---~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~ 850 (1134)
.+. + .+ -...+.+|...++........- ...-...+.
T Consensus 300 ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~se~~~~mhY~v--~ekI~kkf~ 377 (1081)
T KOG1538|consen 300 LYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELYSEDLSDMHYRV--KEKIIKKFE 377 (1081)
T ss_pred hhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEeccccccccchhHH--HHHHHhhcc
Confidence 000 0 00 0012333443333322110000 000000111
Q ss_pred Ec---CCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEE--cCCCCcEEEEEeCCCcEEEEEcccceEEEeccC
Q 001163 851 LS---KNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAF--HPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG 925 (1134)
Q Consensus 851 ~s---~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~--sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~ 925 (1134)
+| -.+..++.+.+..+..+|...- ..++.. -.+-|.-+.. .|-+..-|++|..||.|.-.=+++.-++- +..
T Consensus 378 cSLlVVc~~HiVlCqekrLqClDF~Gv-k~ReW~-M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~PiL-l~~ 454 (1081)
T KOG1538|consen 378 CSLLVVCANHIVLCQEKRLQCLDFSGV-KEREWQ-MESLIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPIL-LLK 454 (1081)
T ss_pred ceEEEEEcCeEEEEcccceeeecccch-hhhhhh-HHHHHHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchhh-eec
Confidence 11 1234455555666666665321 111110 0000111111 12255678889888876544444332222 223
Q ss_pred ccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCC-EEEEEeeceEEE
Q 001163 926 HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQT-HLLAVHETQIAI 1002 (1134)
Q Consensus 926 h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~-~l~~~~d~~i~i 1002 (1134)
....|.|+..+...+.||+..+.++..++|+.+++. .++- .++.+++|..... +|+.+..|.+.|
T Consensus 455 ~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~el----L~QE--------pg~nSV~wNT~~E~MlcfT~~g~L~V 520 (1081)
T KOG1538|consen 455 QATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKEL----LFQE--------PGANSVAWNTQCEDMLCFTGGGYLNV 520 (1081)
T ss_pred ccceeEEeeccCCcceEEEEccCCeEEEEEccCCce----Eeec--------CCCceEEeeccccceEEEecCCceEE
Confidence 456799999999999999999999999999999762 2222 2377899987544 444454455444
No 143
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=9.6e-23 Score=220.35 Aligned_cols=236 Identities=17% Similarity=0.314 Sum_probs=212.9
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 493 (1134)
+..|...|.|+..-..++.+++|+.|..+-+|.+.....+. .+.+|+.+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 35689999999997789999999999999999987654433 6899999999999999988 899999999999999
Q ss_pred CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCC
Q 001163 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (1134)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 573 (1134)
++.++.++++.+|...+.++.|+|.. .+.++|+.|+.+++||.+..++...+..|...+..+.|+|+|++++.++.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-- 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-- 174 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence 99999999999999999999987655 88999999999999999999999999998888999999999999999875
Q ss_pred CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCC
Q 001163 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 653 (1134)
Q Consensus 574 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 653 (1134)
+..+++||...|+....|..|.. .+.++.|+|..-.+..|+.|+++++||+++.+.+...... ...|.+.+|+|+
T Consensus 175 --d~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 175 --DNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPD 249 (825)
T ss_pred --cceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCC
Confidence 45699999999999999999987 8899999999989999999999999999988888777654 668999999999
Q ss_pred CcEEEEEECC
Q 001163 654 GILLAVSTND 663 (1134)
Q Consensus 654 ~~~l~~~~~d 663 (1134)
+..+++|...
T Consensus 250 ~~~~~~G~q~ 259 (825)
T KOG0267|consen 250 GKIVLSGEQI 259 (825)
T ss_pred ceeeecCchh
Confidence 9999888665
No 144
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=5.6e-21 Score=202.19 Aligned_cols=323 Identities=12% Similarity=0.167 Sum_probs=234.7
Q ss_pred cccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEE
Q 001163 412 SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (1134)
Q Consensus 412 ~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i 491 (1134)
.++.||++.|.||...|.|.+||+|+.||+|+||.+.+|.+++... -.+.|.||+|+|.+...+|+.+- +..+.|
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~----~d~~I~~vaw~P~~~~~vLAvA~-~~~~~i 468 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ----FDSEIRSVAWNPLSDLCVLAVAV-GECVLI 468 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe----ecceeEEEEecCCCCceeEEEEe-cCceEE
Confidence 4688999999999999999999999999999999999999987542 34579999999998864444444 444777
Q ss_pred EECCCCceeEEecCCCcCEEEEeccccCCccEEEEe----cCCCcEEEEecCCCC----ceeeecCCCCCeeEEEECcCC
Q 001163 492 WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST----ATDGKIKAWLYDNLG----SRVDYDAPGHSSTMMAYSADG 563 (1134)
Q Consensus 492 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----s~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~~~ 563 (1134)
-+..-|..+..-.. . ..|+++ ..|+.+..|.-.... .+.....+...|..+.|+..|
T Consensus 469 vnp~~G~~~e~~~t-------------~--ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG 533 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPT-------------K--ELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG 533 (733)
T ss_pred eCccccchhhhcch-------------h--hhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence 76554532211100 0 112221 234567788654221 122344567799999999999
Q ss_pred CEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCC
Q 001163 564 ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQ 643 (1134)
Q Consensus 564 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 643 (1134)
.+|++...++ +...|.|+++...+...-|....+ .+..+.|+|...+|++++. ..|+|||+...+++..+... ..
T Consensus 534 DYlatV~~~~-~~~~VliHQLSK~~sQ~PF~kskG-~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg--~k 608 (733)
T KOG0650|consen 534 DYLATVMPDS-GNKSVLIHQLSKRKSQSPFRKSKG-LVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG--SK 608 (733)
T ss_pred ceEEEeccCC-CcceEEEEecccccccCchhhcCC-ceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC--Ce
Confidence 9999988764 455688999887766655544444 7889999999999988875 68999999988777766532 45
Q ss_pred CcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCccc
Q 001163 644 ASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPA 723 (1134)
Q Consensus 644 ~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 723 (1134)
.|..++.+|.|..|+.++.|+.+..+|+.-.....+++.
T Consensus 609 wiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr----------------------------------------- 647 (733)
T KOG0650|consen 609 WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLR----------------------------------------- 647 (733)
T ss_pred eeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhh-----------------------------------------
Confidence 788999999999999999999999999865532222222
Q ss_pred ccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEee
Q 001163 724 AAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLW 803 (1134)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw 803 (1134)
-|...+++++|++.-.++++++.||.+.||
T Consensus 648 --------------------------------------------------~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 648 --------------------------------------------------LHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred --------------------------------------------------hhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 177888999999999999999999999987
Q ss_pred ecCCCCCCcccccccCCCCccc-CCCCCcccc--cCCCCCCCCCC----eeEEEEcCCCCeEEEee-CCeEEEE
Q 001163 804 KWPRNERNSTGKATTNQAPQLW-QPPSGILMT--NDISDTNPEDA----VPCFALSKNDSYVMSAS-GGKISLF 869 (1134)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~--~~~~~~~h~~~----v~~v~~s~dg~~la~~s-dg~i~lw 869 (1134)
--. +| |+....++. ..+++ |... |..+.|+|...+|.+++ ||+|++|
T Consensus 678 hg~-----------------VY~Dl~qnpliVPlK~L~g--H~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 678 HGM-----------------VYNDLLQNPLIVPLKRLRG--HEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eee-----------------eehhhhcCCceEeeeeccC--ceeecccceEeecccCCCceEEecCCCceEEee
Confidence 421 11 111111111 11233 5444 88899999999999998 9999998
No 145
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=1.8e-19 Score=192.30 Aligned_cols=276 Identities=13% Similarity=0.193 Sum_probs=214.4
Q ss_pred CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc
Q 001163 552 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN 631 (1134)
Q Consensus 552 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 631 (1134)
+.|..++|-|||..|+.+..+ .+.+||...|..+.++++|.+ .|.+++|+.||+.+++|+.|..|.+|+..-.-
T Consensus 13 hci~d~afkPDGsqL~lAAg~-----rlliyD~ndG~llqtLKgHKD-tVycVAys~dGkrFASG~aDK~VI~W~~klEG 86 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAGS-----RLLVYDTSDGTLLQPLKGHKD-TVYCVAYAKDGKRFASGSADKSVIIWTSKLEG 86 (1081)
T ss_pred cchheeEECCCCceEEEecCC-----EEEEEeCCCcccccccccccc-eEEEEEEccCCceeccCCCceeEEEecccccc
Confidence 378899999999998887644 499999999999999999998 99999999999999999999999999864322
Q ss_pred eeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccc
Q 001163 632 LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANAN 711 (1134)
Q Consensus 632 ~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1134)
.+. + .|.+.|.|+.|+|-...|++++-. ..-+|......
T Consensus 87 ~Lk-Y---SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~------------------------------------ 125 (1081)
T KOG1538|consen 87 ILK-Y---SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS------------------------------------ 125 (1081)
T ss_pred eee-e---ccCCeeeEeecCchHHHhhhcchh-hccccChhhhh------------------------------------
Confidence 222 1 457789999999998889887654 44566543220
Q ss_pred cccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCcee
Q 001163 712 VGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAI 791 (1134)
Q Consensus 712 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l 791 (1134)
|. ......++.+.+|..||.++
T Consensus 126 ---------------------------------------V~-------------------K~kss~R~~~CsWtnDGqyl 147 (1081)
T KOG1538|consen 126 ---------------------------------------VS-------------------KHKSSSRIICCSWTNDGQYL 147 (1081)
T ss_pred ---------------------------------------HH-------------------hhhhheeEEEeeecCCCcEE
Confidence 00 00134678899999999999
Q ss_pred eeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCC-----eEEEee-CCe
Q 001163 792 LALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS-----YVMSAS-GGK 865 (1134)
Q Consensus 792 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-----~la~~s-dg~ 865 (1134)
+.|-.||+|.+-+-..+ ....+.-+| |...+|.+++|+|... .+++.. ..+
T Consensus 148 alG~~nGTIsiRNk~gE----------------------ek~~I~Rpg-g~Nspiwsi~~~p~sg~G~~di~aV~DW~qT 204 (1081)
T KOG1538|consen 148 ALGMFNGTISIRNKNGE----------------------EKVKIERPG-GSNSPIWSICWNPSSGEGRNDILAVADWGQT 204 (1081)
T ss_pred EEeccCceEEeecCCCC----------------------cceEEeCCC-CCCCCceEEEecCCCCCCccceEEEEeccce
Confidence 99999999998532211 111222233 5789999999998643 566666 567
Q ss_pred EEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEE
Q 001163 866 ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSS 945 (1134)
Q Consensus 866 i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~ 945 (1134)
+.++.+ +|+.+..-+.-.-...|+.+.+ +|.++..|+.|+.+.+|. +.|-.+.++.....-|+.++..|+++.++.|
T Consensus 205 LSFy~L-sG~~Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~G 281 (1081)
T KOG1538|consen 205 LSFYQL-SGKQIGKDRALNFDPCCISYFT-NGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVG 281 (1081)
T ss_pred eEEEEe-cceeecccccCCCCchhheecc-CCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEE
Confidence 777776 5566654444455678999999 999999999999999997 4577777887788899999999999999999
Q ss_pred eCCCcEEEEECCC
Q 001163 946 GADSQLCVWSTDG 958 (1134)
Q Consensus 946 s~Dg~i~iwd~~~ 958 (1134)
+.||+|..|++..
T Consensus 282 CqDGTiACyNl~f 294 (1081)
T KOG1538|consen 282 CQDGTIACYNLIF 294 (1081)
T ss_pred EccCeeehhhhHH
Confidence 9999999998643
No 146
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=8.7e-21 Score=202.56 Aligned_cols=289 Identities=16% Similarity=0.112 Sum_probs=208.0
Q ss_pred CceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeE
Q 001163 788 GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKI 866 (1134)
Q Consensus 788 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i 866 (1134)
...|+.+.+||.|.++|.....+. ++..++.. .. .|...|..+.|-|....|++++ |.++
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr---------------~ee~~lk~--~~--aH~nAifDl~wapge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFR---------------LEERQLKK--PL--AHKNAIFDLKWAPGESLLVSASGDSTI 124 (720)
T ss_pred cceEEEecCCCceeeecchhhhcc---------------hhhhhhcc--cc--cccceeEeeccCCCceeEEEccCCcee
Confidence 456788888999999987654332 11111111 22 3999999999999666788887 8899
Q ss_pred EEEEccCCeEEEE--ecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce--------------------------
Q 001163 867 SLFNMMTFKTMTT--FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE-------------------------- 918 (1134)
Q Consensus 867 ~lwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~-------------------------- 918 (1134)
++||+.+.+++.. +.+|.+.|.+++|.|.+...+++|+.||.|.|||+.-..
T Consensus 125 r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 125 RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 9999999998888 889999999999999888899999999999999985211
Q ss_pred -EEEeccCccCceEE---EEEeeCCCEEEEEeC-CCcEEEEECCCCcccc----ceeeeecCCCCCCCCCceEEEEcCCC
Q 001163 919 -VKTKLKGHQKRITG---LAFSNTLNVLVSSGA-DSQLCVWSTDGWEKQA----SKFLTIPNGRTASALADTRVQFHLDQ 989 (1134)
Q Consensus 919 -~~~~l~~h~~~V~~---l~~s~d~~~l~s~s~-Dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~v~~l~fs~dg 989 (1134)
.+.....|...|.+ +.+..|...|||+|. |+.|+|||+....... ......+. +....-++.++.....|
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t-~skrs~G~~nL~lDssG 283 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPT-HSKRSVGQVNLILDSSG 283 (720)
T ss_pred ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccC-cccceeeeEEEEecCCC
Confidence 11222345566666 667789999999988 9999999997743211 11111111 11112456777777888
Q ss_pred CEEEE-EeeceEEEEeCCCcccceeeccCCC--ccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCC
Q 001163 990 THLLA-VHETQIAIYEAPKLECLKQFVPREA--SGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPT 1066 (1134)
Q Consensus 990 ~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h--~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~ 1066 (1134)
.+|++ +.|++|++|++.....-......+| ..--..-..|||+.+|++|+.|...++|.+.+.+.-.. +..
T Consensus 284 t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~------~l~ 357 (720)
T KOG0321|consen 284 TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA------LLL 357 (720)
T ss_pred CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh------hhh
Confidence 99888 6999999999986654332222232 11122335689999999999999999999988765321 223
Q ss_pred CCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCC
Q 001163 1067 NPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEA 1104 (1134)
Q Consensus 1067 ~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~ 1104 (1134)
||.-+|+.+ +|.|.+-.-++++++|-++++|++.+.
T Consensus 358 Ght~eVt~V--~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 358 GHTREVTTV--RWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CcceEEEEE--eeccccCCCceeeccCcceEEEeccCc
Confidence 788888888 555655567888899999999999543
No 147
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=2.7e-20 Score=188.81 Aligned_cols=304 Identities=19% Similarity=0.186 Sum_probs=219.9
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
...+|..+.|.+++...+|+|+.|..|+||.+..++.-.. .........+..|...|+++.|+|+|++||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~----------~~~V~y~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG----------DMKVEYLSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC----------ceeEEEeecccCCcceeEEEEEcCCcCeee
Confidence 4578999999998875789999999999999976643221 001112235889999999999999999999
Q ss_pred EEeCCCEEEEEEcc--------C-----CceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE
Q 001163 435 VAYSKHIVHLYTYH--------G-----GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY 501 (1134)
Q Consensus 435 s~s~dg~v~iwd~~--------~-----~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 501 (1134)
+|+.+|.|.+|... + .+.......+.+|...|..++|+|++. ++++++.|+++++||+..|..+.
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence 99999999999876 3 222233446889999999999999999 89999999999999999999999
Q ss_pred EecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec-------------------CCCC----CeeEEE
Q 001163 502 IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-------------------APGH----SSTMMA 558 (1134)
Q Consensus 502 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-------------------~~~~----~v~~~~ 558 (1134)
.+..|...|..++|.+.. +++++-+.|...+.+.+...+...... .|.. -...++
T Consensus 160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls 237 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS 237 (434)
T ss_pred eccccccccceeecchhh--hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence 999999999999997655 889998888876666554322211110 0111 234578
Q ss_pred ECcCCCEEEEEecC----CCC-CeEEEEEeCCC-CeeEEEecCCCCCceEEEEEcC-----------------CCCEEEE
Q 001163 559 YSADGARLFSCGTN----KEG-ESYLVEWNESE-GAVKRTYHGLGKRSVGVVQFDT-----------------TKNRFLA 615 (1134)
Q Consensus 559 ~s~~~~~l~~~~~~----~~~-~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~-----------------~~~~l~~ 615 (1134)
|+|||..+++...- +.- ....++++-.. .++...+.+... ....+.|+| -.+.+++
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 99999999875421 110 22334444322 233444444433 333444433 1123333
Q ss_pred EeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 616 AGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 616 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
......|++||.++-.++..... -|...++.++|+++|..++..+.||...+..++..
T Consensus 317 iAt~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 317 IATKNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred EeecceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 34456899999999988887754 34678999999999999999999999888777665
No 148
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=1.4e-20 Score=201.11 Aligned_cols=289 Identities=16% Similarity=0.221 Sum_probs=210.8
Q ss_pred EEEc--CCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCC
Q 001163 362 MDFH--PVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK 439 (1134)
Q Consensus 362 v~fs--p~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~d 439 (1134)
+.|+ |..+++||.+..||.|.++|.....-. ++ +.+......|...|..+.|-|....|++++.|
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr---------~e----e~~lk~~~aH~nAifDl~wapge~~lVsasGD 121 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFR---------LE----ERQLKKPLAHKNAIFDLKWAPGESLLVSASGD 121 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcc---------hh----hhhhcccccccceeEeeccCCCceeEEEccCC
Confidence 4454 356679999999999999998654321 01 11112256799999999999977899999999
Q ss_pred CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc--------------------e
Q 001163 440 HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT--------------------K 499 (1134)
Q Consensus 440 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~--------------------~ 499 (1134)
.++++||+++++..... .+.||.+.|.+++|.|.+.. .+++|+.||.|.|||++-.. .
T Consensus 122 sT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred ceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 99999999998866533 47899999999999999887 79999999999999986332 0
Q ss_pred -------eEEecCCCcCEEE----EeccccCCccEEEEecC-CCcEEEEecCCCCceeee--------cCC---CCCeeE
Q 001163 500 -------QYIFEGHESPVYS----ICPHHKENIQFIFSTAT-DGKIKAWLYDNLGSRVDY--------DAP---GHSSTM 556 (1134)
Q Consensus 500 -------~~~~~~h~~~v~~----~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~--------~~~---~~~v~~ 556 (1134)
+.....+...|.+ +.| .|...|++++. |+.|+|||++........ ..+ ...+.+
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~f---kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~n 276 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVLF---KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVN 276 (720)
T ss_pred CchhhccccccccccCceeeeeEEEEE---eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEE
Confidence 0111233333433 433 23368888887 999999999865443321 112 226778
Q ss_pred EEECcCCCEEEEEecCCCCCeEEEEEeCCCC--eeEEEecCCCCCceE-EEEEcCCCCEEEEEeCCCeEEEEEcCCCcee
Q 001163 557 MAYSADGARLFSCGTNKEGESYLVEWNESEG--AVKRTYHGLGKRSVG-VVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL 633 (1134)
Q Consensus 557 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 633 (1134)
+.....|.+|++.+.|+ .|++||+.+- .++..+.++....++ .-..+|++.++++|+.|...++|.+.+.+.-
T Consensus 277 L~lDssGt~L~AsCtD~----sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 277 LILDSSGTYLFASCTDN----SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP 352 (720)
T ss_pred EEecCCCCeEEEEecCC----cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC
Confidence 88888888888777644 4999999864 345555555432322 2357899999999999999999999876543
Q ss_pred E-EEecCCCCCCcceEEEcCC-CcEEEEEECCCcEEEEEccCC
Q 001163 634 A-SIDADGGLQASPCIRFNKE-GILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 634 ~-~~~~~~~~~~v~~v~~sp~-~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
. .+. +|...|.+++|.|. -.-++++++|-.++||++.++
T Consensus 353 ~~~l~--Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 353 PALLL--GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhhhh--CcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 3 333 55778999999983 345667799999999999765
No 149
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.8e-21 Score=212.49 Aligned_cols=248 Identities=12% Similarity=0.202 Sum_probs=196.1
Q ss_pred CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC-CCCEEEEE
Q 001163 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTLFGVA 436 (1134)
Q Consensus 358 ~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~las~ 436 (1134)
.+..|+|+.--..+||+++..|.|.+||+...-. ..+...+..|+..|+++.|++ ...+|++|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r----------------nk~l~~f~EH~Rs~~~ldfh~tep~iliSG 152 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR----------------NKLLTVFNEHERSANKLDFHSTEPNILISG 152 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCcccc----------------chhhhHhhhhccceeeeeeccCCccEEEec
Confidence 4556788876666899999999999999976210 011124789999999999999 67799999
Q ss_pred eCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC-ceeEEecCCCcCEEEEec
Q 001163 437 YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSICP 515 (1134)
Q Consensus 437 s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~ 515 (1134)
|.||+|++||++..+... ++.+....|..|+|+|...+ .++++...|.+++||++.. ++...+.+|.++|.|+.|
T Consensus 153 SQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 153 SQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW 228 (839)
T ss_pred CCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence 999999999999877544 56778889999999997655 7999999999999999865 566788999999999999
Q ss_pred cccCCccEEEEecCCCcEEEEecCCCCceeeecCC-CCCeeEEEECcCCCE-EEEEecCCCCCeEEEEEeCCCCe-eEEE
Q 001163 516 HHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP-GHSSTMMAYSADGAR-LFSCGTNKEGESYLVEWNESEGA-VKRT 592 (1134)
Q Consensus 516 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~~-~~~~ 592 (1134)
+| ++.+|+||+.|+.|+|||+...........+ ..++..+.|-|...+ |++++.- .+..|++||++..- +..+
T Consensus 229 hP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv--~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 229 HP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMV--VDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred cC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhcc--ccceEEEEeecccccccee
Confidence 87 5589999999999999999876655554443 348999999998764 5666553 36679999998774 4456
Q ss_pred ecCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCC
Q 001163 593 YHGLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMDNV 630 (1134)
Q Consensus 593 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 630 (1134)
+..|.. .++.++|.. |...+.+++.||+|..-.++++
T Consensus 305 ~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 305 FLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeccCc-cccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 777776 888899965 3467788888888766555443
No 150
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=5.9e-20 Score=194.53 Aligned_cols=327 Identities=14% Similarity=0.237 Sum_probs=238.1
Q ss_pred eEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCc--EEEEEECCCcE
Q 001163 589 VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI--LLAVSTNDNGI 666 (1134)
Q Consensus 589 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~--~l~~~~~dg~i 666 (1134)
+-..|.+|.+ .|.++...|.|.+|++|+.||+|+||.+.+|.++..+... +.|.|++|+|.+. .||++..+ .+
T Consensus 392 ~~lvyrGHtg-~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---~~I~~vaw~P~~~~~vLAvA~~~-~~ 466 (733)
T KOG0650|consen 392 CALVYRGHTG-LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD---SEIRSVAWNPLSDLCVLAVAVGE-CV 466 (733)
T ss_pred eeeeEeccCC-eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec---ceeEEEEecCCCCceeEEEEecC-ce
Confidence 3456778887 8999999999999999999999999999999999999874 3689999999664 45555444 46
Q ss_pred EEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccc
Q 001163 667 KILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADE 746 (1134)
Q Consensus 667 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (1134)
.|.+..-|..+.. +.+.... ... | .-..
T Consensus 467 ~ivnp~~G~~~e~---~~t~ell----------------~~~-----~----------------------------~~~~ 494 (733)
T KOG0650|consen 467 LIVNPIFGDRLEV---GPTKELL----------------ASA-----P----------------------------NESE 494 (733)
T ss_pred EEeCccccchhhh---cchhhhh----------------hcC-----C----------------------------CccC
Confidence 6655443311110 0000000 000 0 0011
Q ss_pred cccccceeeecccCCcc--ceeccccCCccccccEEEEEEecCCceeeeeccC---CeEEeeecCCCCCCcccccccCCC
Q 001163 747 AVEKSRIWKLTEITEPS--QCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN---AVHKLWKWPRNERNSTGKATTNQA 821 (1134)
Q Consensus 747 ~d~~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~ 821 (1134)
.+..+..|.-....+.. .+..+ .|...|..+.|+..|.+|++...+ ..+.|+++...
T Consensus 495 p~~~~~~W~~~~~~e~~~~v~~~I-----~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~------------- 556 (733)
T KOG0650|consen 495 PDAAVVTWSRASLDELEKGVCIVI-----KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKR------------- 556 (733)
T ss_pred CcccceeechhhhhhhccceEEEE-----ecCCccceeeeecCCceEEEeccCCCcceEEEEecccc-------------
Confidence 12355566544322211 22222 278899999999999999988774 56667765532
Q ss_pred CcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEE
Q 001163 822 PQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIA 901 (1134)
Q Consensus 822 ~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la 901 (1134)
..+ ..+.. ..+.|.++.|+|...+|+++....|+|||+..++.+..+......|..++++| .|..|+
T Consensus 557 ---------~sQ-~PF~k--skG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli 623 (733)
T KOG0650|consen 557 ---------KSQ-SPFRK--SKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLI 623 (733)
T ss_pred ---------ccc-Cchhh--cCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEE
Confidence 111 12222 46788999999999999999999999999999888888887778899999999 888999
Q ss_pred EEeCCCcEEEEEcccc-eEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEEC--CCCc--cccceeeeecCCCCCC
Q 001163 902 IGMEDSSIQIYNVRVD-EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWST--DGWE--KQASKFLTIPNGRTAS 976 (1134)
Q Consensus 902 ~g~~dg~i~iwd~~~~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~--~~~~--~~~~~~~~~~~~~~~~ 976 (1134)
.|+.|+.++.+|+.-+ +..+++..|...+++++|++.-.+++||+.||++.|+-- .+.- ......++...+|...
T Consensus 624 ~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~ 703 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT 703 (733)
T ss_pred EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceee
Confidence 9999999999999854 677889999999999999999999999999999998842 1111 0112345556666643
Q ss_pred -CCCceEEEEcCCCCEEEE-EeeceEEEE
Q 001163 977 -ALADTRVQFHLDQTHLLA-VHETQIAIY 1003 (1134)
Q Consensus 977 -~~~v~~l~fs~dg~~l~~-~~d~~i~iw 1003 (1134)
..+|..+.|+|..-+|++ |.||+|++|
T Consensus 704 ~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 704 NDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cccceEeecccCCCceEEecCCCceEEee
Confidence 246888899999999999 689999998
No 151
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2.1e-20 Score=191.75 Aligned_cols=249 Identities=12% Similarity=0.171 Sum_probs=193.1
Q ss_pred EEEEEcC-------CCCEEEEEeCCCEEEEEEccCCceeeeeee------------------eecCCCCEEEEEEecCCC
Q 001163 422 NRVMWSP-------DGTLFGVAYSKHIVHLYTYHGGDELRNHLE------------------IEAHVGSVNDLAFSYPNK 476 (1134)
Q Consensus 422 ~~l~~sp-------d~~~las~s~dg~v~iwd~~~~~~~~~~~~------------------l~~h~~~V~~v~~s~~~~ 476 (1134)
.|++|.. .|+|+|.|+.|..|.|||+.-...+.+... -.+|+..|.+++|+.+-+
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 4566643 478999999999999999864322222111 237999999999998877
Q ss_pred ceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeE
Q 001163 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM 556 (1134)
Q Consensus 477 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 556 (1134)
. .|+|||.|.+|++||+.+|++..++..|...|.++.|++... .+|++|+.|++|.+.|.+........-.-.+.|-.
T Consensus 257 n-VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p-~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEk 334 (463)
T KOG0270|consen 257 N-VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEP-SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEK 334 (463)
T ss_pred e-eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCc-eEEEeccccceEEeeeccCccccCceEEeccceEE
Confidence 7 799999999999999999999999999999999999997654 79999999999999999853333222223457889
Q ss_pred EEECcCCCEEEEEecCCCCCeEEEEEeCCCC-eeEEEecCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceeE
Q 001163 557 MAYSADGARLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLA 634 (1134)
Q Consensus 557 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 634 (1134)
++|.|.....+.++.+ ++.++-+|++.. +++.++..|.. .|.++++++.. ..+++++.|+.|++|++.....-.
T Consensus 335 v~w~~~se~~f~~~td---dG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~ 410 (463)
T KOG0270|consen 335 VAWDPHSENSFFVSTD---DGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS 410 (463)
T ss_pred EEecCCCceeEEEecC---CceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCcc
Confidence 9999988776666643 567999999875 89999999998 99999998876 567788899999999987654433
Q ss_pred EEecCCCCCCcceEEEcCCC-cEEEEEECCCcEEEEEccCCce
Q 001163 635 SIDADGGLQASPCIRFNKEG-ILLAVSTNDNGIKILANADGIR 676 (1134)
Q Consensus 635 ~~~~~~~~~~v~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~~~ 676 (1134)
.....-..+...|.++.|+- ..++.|+..+.+++||+.+...
T Consensus 411 v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 411 VKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred cccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 22221113345677888855 5677888888999999987643
No 152
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2.4e-20 Score=203.80 Aligned_cols=300 Identities=12% Similarity=0.174 Sum_probs=225.8
Q ss_pred eecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC-CCC
Q 001163 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGT 431 (1134)
Q Consensus 353 ~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~ 431 (1134)
++-.....+|...++-..+++.|- ....||.+........ +.+.... -..-...+..+.|+. +.+
T Consensus 36 ~~~k~~~nAIs~nr~~~qiv~AGr--s~lklyai~~~~~~~~--~~~~~k~----------kqn~~~S~~DVkW~~~~~N 101 (839)
T KOG0269|consen 36 CKLKAKANAISVNRDINQIVVAGR--SLLKLYAINPNDFSEK--CNHRFKT----------KQNKFYSAADVKWGQLYSN 101 (839)
T ss_pred eecccccceEeecCCcceeEEecc--cceeeEeeCcccCCcc--eeeeccc----------ccceeeehhhcccccchhh
Confidence 334556777888888776655543 2466666654332111 1110000 011123556688886 789
Q ss_pred EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEE
Q 001163 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 511 (1134)
Q Consensus 432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~ 511 (1134)
+||+++..|.|.+||+.....-+....+..|+..++++.|++-... +|+|||.||+|++||++..+-..++.+....|.
T Consensus 102 lIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiR 180 (839)
T KOG0269|consen 102 LIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIR 180 (839)
T ss_pred hheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhh
Confidence 9999999999999999873222223368899999999999998777 899999999999999999999999999999999
Q ss_pred EEeccccCCccEEEEecCCCcEEEEecCCC-CceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeE
Q 001163 512 SICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590 (1134)
Q Consensus 512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 590 (1134)
.+.|++.. +..++++.+.|.+++||++.. .....+..|.++|.++.|+|++.+||+||.|+ +|++||+.+++..
T Consensus 181 DV~fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK----~vkiWd~t~~~~~ 255 (839)
T KOG0269|consen 181 DVKFSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDK----MVKIWDMTDSRAK 255 (839)
T ss_pred ceeeccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCc----cEEEEeccCCCcc
Confidence 99999866 589999999999999999864 45667889999999999999999999998654 6999999887665
Q ss_pred EEecCCCCCceEEEEEcCCCCE-EEEEe--CCCeEEEEEcCCCc-eeEEEecCCCCCCcceEEEcC-CCcEEEEEECCCc
Q 001163 591 RTYHGLGKRSVGVVQFDTTKNR-FLAAG--DEFMIKFWDMDNVN-LLASIDADGGLQASPCIRFNK-EGILLAVSTNDNG 665 (1134)
Q Consensus 591 ~~~~~~~~~~v~~~~~~~~~~~-l~~~~--~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~~dg~ 665 (1134)
....-+...++..+.|-|...+ |++++ .|-.|+|||++..- +..++..| ...++.++|.. |...+.+++.||+
T Consensus 256 ~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~t 333 (839)
T KOG0269|consen 256 PKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWDSGDRINLWSCSKDGT 333 (839)
T ss_pred ceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc--CccccceeccCCCceeeEeecCccH
Confidence 5555555568999999998755 55554 68899999997543 44555544 67889999976 5678889999998
Q ss_pred EEEEEccCC
Q 001163 666 IKILANADG 674 (1134)
Q Consensus 666 i~iw~~~~~ 674 (1134)
+..-.+.+.
T Consensus 334 v~qh~~kna 342 (839)
T KOG0269|consen 334 VLQHLFKNA 342 (839)
T ss_pred HHHhhhhcc
Confidence 866554443
No 153
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.2e-19 Score=173.48 Aligned_cols=255 Identities=11% Similarity=0.167 Sum_probs=191.4
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCc-eeeeeeeeecCCCCEEEEEEecC--CCceEEEEEeCCCeEE
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD-ELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIK 490 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~-~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~ 490 (1134)
-.+|.+-|.|+.|.+-|+.+|+|+.|++|+|||.+... ........+.|.+.|..+.|.+. |+ .+++++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 46899999999999999999999999999999965432 24445568899999999999764 55 899999999999
Q ss_pred EEECCC---------CceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCcee------eec-------
Q 001163 491 VWDAVT---------GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV------DYD------- 548 (1134)
Q Consensus 491 iwd~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~------~~~------- 548 (1134)
||.-.. -....++......|+.++|.|..-|-.+++++.||.+|||+........ ++.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 997421 1233466778889999999999989999999999999999765432221 111
Q ss_pred CCCCCeeEEEECcC---CCEEEEEecCC-CCCeEEEEEeCCCC----eeEEEecCCCCCceEEEEEcCCC----CEEEEE
Q 001163 549 APGHSSTMMAYSAD---GARLFSCGTNK-EGESYLVEWNESEG----AVKRTYHGLGKRSVGVVQFDTTK----NRFLAA 616 (1134)
Q Consensus 549 ~~~~~v~~~~~s~~---~~~l~~~~~~~-~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~ 616 (1134)
.+.....++.|+|. ..+|+.++.+. .....++||....+ ..+.++.++.. +|+.++|.|.- ..|+++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEe
Confidence 12336778899874 34677776541 11224666654432 34556777776 99999999974 568889
Q ss_pred eCCCeEEEEEcCCCc-----------------eeEEEe-cCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEcc
Q 001163 617 GDEFMIKFWDMDNVN-----------------LLASID-ADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (1134)
Q Consensus 617 ~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 672 (1134)
+.|| |+||++.... .+..+. ..+|...|..+.|+-.|..|++.++||.||+|...
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999 9999986311 122222 33567799999999999999999999999999753
No 154
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2.6e-21 Score=209.37 Aligned_cols=233 Identities=13% Similarity=0.224 Sum_probs=206.6
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
|...|.|+..-..++ .+++|+.|..+-+|.+..-..+. .+.+|+.+|.|+.|+++..+|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhhhc
Confidence 778888888855665 67899999999999986543332 2689999999999999999999
Q ss_pred EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEe
Q 001163 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC 514 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 514 (1134)
+|+.+|+|++||++.++.++ +|.||...+.++.|+|-+. +.++|+.|+.+++||++...|.+.+.+|...|..+.
T Consensus 87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 99999999999999988777 7999999999999999999 789999999999999999999999999999999999
Q ss_pred ccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEec
Q 001163 515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594 (1134)
Q Consensus 515 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 594 (1134)
|. ++|.+++++++|.++++||+..++....+..|...+.++.|+|..-.++.|+.++ .+++||+++.+.+....
T Consensus 162 ls--P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~----tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 162 LS--PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDR----TVRFWDLETFEVISSGK 235 (825)
T ss_pred ec--CCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCc----eeeeeccceeEEeeccC
Confidence 85 5569999999999999999999999889999999999999999998888887644 69999999999888877
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCC
Q 001163 595 GLGKRSVGVVQFDTTKNRFLAAGDE 619 (1134)
Q Consensus 595 ~~~~~~v~~~~~~~~~~~l~~~~~d 619 (1134)
.... .|.+..|+|++..+++|...
T Consensus 236 ~~~~-~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 236 PETD-GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CccC-CceeeeecCCceeeecCchh
Confidence 7755 89999999999988888654
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=9.2e-21 Score=216.99 Aligned_cols=251 Identities=14% Similarity=0.227 Sum_probs=206.4
Q ss_pred CCCEEEEEEcCCCCE----EEEEeCCCEEEEEEccC---CceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEE
Q 001163 418 TASVNRVMWSPDGTL----FGVAYSKHIVHLYTYHG---GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK 490 (1134)
Q Consensus 418 ~~~V~~l~~spd~~~----las~s~dg~v~iwd~~~---~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~ 490 (1134)
...-+.++|.+.|.. ||.|..||.|.+||... +.......+...|.+.|..+.|++...+ +|++|+.||.|.
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~ 142 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEIL 142 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEE
Confidence 457789999997765 89999999999999875 3333344467789999999999998877 799999999999
Q ss_pred EEECCCCceeEEec--CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCC--CeeEEEECcCCCE-
Q 001163 491 VWDAVTGTKQYIFE--GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH--SSTMMAYSADGAR- 565 (1134)
Q Consensus 491 iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~- 565 (1134)
|||+..-+.-.++. ...+.|.+++|+..- ...|++++.+|.+.|||++..+.+..+..+.. .+..++|+|++..
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkv-qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKV-SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchhh-hHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence 99998866555542 246789999997543 47899999999999999998877777766554 5789999998864
Q ss_pred EEEEecCCCCCeEEEEEeCCCC-eeEEEecCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceeEEEecCCCCC
Q 001163 566 LFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQ 643 (1134)
Q Consensus 566 l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 643 (1134)
+++++ +.+....|.+||++.. .+++++.+|.. .|.++.|++.+ .++++++.|+.|.+|+.++++.+..+... ..
T Consensus 222 l~~As-~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~--~n 297 (1049)
T KOG0307|consen 222 LLVAS-GDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ--GN 297 (1049)
T ss_pred eeeec-CCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC--Cc
Confidence 44444 4467888999998864 56777888877 89999999987 78889999999999999999999998864 45
Q ss_pred CcceEEEcCCC-cEEEEEECCCcEEEEEccCC
Q 001163 644 ASPCIRFNKEG-ILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 644 ~v~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~ 674 (1134)
.+..+.|+|.. ..+++++-||.|.|+.+...
T Consensus 298 W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 298 WCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred ceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 88999999955 58899999999999998765
No 156
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=1.2e-16 Score=187.47 Aligned_cols=373 Identities=22% Similarity=0.382 Sum_probs=285.1
Q ss_pred eecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc-eeEEecCCCc-CEEEEeccccCCcc-EEEEecC-CCcEE
Q 001163 459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-KQYIFEGHES-PVYSICPHHKENIQ-FIFSTAT-DGKIK 534 (1134)
Q Consensus 459 l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~~-~v~~~~~~~~~~~~-~l~s~s~-dg~i~ 534 (1134)
+..|...+..+.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence 567999999999999998 78888899999999998887 7777776443 77777774 55555 5555444 99999
Q ss_pred EEecCC-CCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCC-E
Q 001163 535 AWLYDN-LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN-R 612 (1134)
Q Consensus 535 vwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 612 (1134)
+|+... ......+..+...+..++|+|+++.++.++. .+..+.+|+...+..+..+.+|.. .+.++.|+|++. .
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 213 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHTD-PVSSLAFSPDGGLL 213 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCCC-ceEEEEEcCCcceE
Confidence 999987 6677778888889999999999998877753 255699999999888888888766 899999999998 4
Q ss_pred EEEEeCCCeEEEEEcCCCceeE-EEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCccccccc
Q 001163 613 FLAAGDEFMIKFWDMDNVNLLA-SIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRV 691 (1134)
Q Consensus 613 l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 691 (1134)
+++++.|+.|++||...+..+. .+..+ .... ...|+|++..+++++.|+.+++|+..........+
T Consensus 214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---------- 280 (466)
T COG2319 214 IASGSSDGTIRLWDLSTGKLLRSTLSGH--SDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL---------- 280 (466)
T ss_pred EEEecCCCcEEEEECCCCcEEeeecCCC--Ccce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE----------
Confidence 5555899999999988777777 46554 3332 22899999899999999999999987652201100
Q ss_pred chhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccC
Q 001163 692 ASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLP 771 (1134)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~ 771 (1134)
T Consensus 281 -------------------------------------------------------------------------------- 280 (466)
T COG2319 281 -------------------------------------------------------------------------------- 280 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEE
Q 001163 772 DNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFAL 851 (1134)
Q Consensus 772 ~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~ 851 (1134)
.+|...+.++.|.|++..+++++.|+.+.+|+...... ..... ...|...+..+.+
T Consensus 281 -~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~-~~~~~~~~~~~~~ 336 (466)
T COG2319 281 -SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL----------------------LSSLT-LKGHEGPVSSLSF 336 (466)
T ss_pred -ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce----------------------EEEee-ecccCCceEEEEE
Confidence 02567888999999988888888888899996553211 00000 0126667888888
Q ss_pred cCCCCeEEEe-e-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEE-EeCCCcEEEEEcccceEEEeccCccC
Q 001163 852 SKNDSYVMSA-S-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAI-GMEDSSIQIYNVRVDEVKTKLKGHQK 928 (1134)
Q Consensus 852 s~dg~~la~~-s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~-g~~dg~i~iwd~~~~~~~~~l~~h~~ 928 (1134)
.+++..++.+ . |+.+.+|+............. ..+..+.+.+ + ..++. +..++.+.+|+............+..
T Consensus 337 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (466)
T COG2319 337 SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTS 413 (466)
T ss_pred CCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCC
Confidence 4343555555 4 788999999887733333322 2288999998 7 55555 88999999999998887777665547
Q ss_pred ceEEEEEeeCCCEEEEEeCCCcEEEEECCC
Q 001163 929 RITGLAFSNTLNVLVSSGADSQLCVWSTDG 958 (1134)
Q Consensus 929 ~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~ 958 (1134)
.+....+++++..+++++.++.+++|+...
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 414 RVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 799999999999999999999999999887
No 157
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.6e-18 Score=167.04 Aligned_cols=254 Identities=13% Similarity=0.221 Sum_probs=189.5
Q ss_pred ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC--CCC
Q 001163 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGT 431 (1134)
Q Consensus 354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~ 431 (1134)
+|.+-|.++.|.+-|+++ |+++.|++|.|||.....-.- .. ...-+.|.+.|..+.|-+ -|+
T Consensus 11 ~h~DlihdVs~D~~GRRm-AtCSsDq~vkI~d~~~~s~~W-------~~--------Ts~Wrah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRM-ATCSSDQTVKIWDSTSDSGTW-------SC--------TSSWRAHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred CCcceeeeeeecccCcee-eeccCCCcEEEEeccCCCCce-------EE--------eeeEEecCCcEEEEEecCccccc
Confidence 378899999999999975 899999999999975443211 10 112457999999999976 699
Q ss_pred EEEEEeCCCEEEEEEccC------CceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCcee-----
Q 001163 432 LFGVAYSKHIVHLYTYHG------GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ----- 500 (1134)
Q Consensus 432 ~las~s~dg~v~iwd~~~------~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~----- 500 (1134)
.+|+++.|+++.||.-.. +..-....++......|+.+.|.|....+.+++++.||.+|||+....-.+
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 999999999999997521 112223446777888999999999887779999999999999987654322
Q ss_pred -EEec-------CCCcCEEEEeccccCCc-cEEEEecCC-----CcEEEEecCCCCce----eeecCCCCCeeEEEECcC
Q 001163 501 -YIFE-------GHESPVYSICPHHKENI-QFIFSTATD-----GKIKAWLYDNLGSR----VDYDAPGHSSTMMAYSAD 562 (1134)
Q Consensus 501 -~~~~-------~h~~~v~~~~~~~~~~~-~~l~s~s~d-----g~i~vwd~~~~~~~----~~~~~~~~~v~~~~~s~~ 562 (1134)
..+. .+..+..|+.|+++.-. .+|+.|+.+ +.++||.......+ ..+..+..+|++++|.|+
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 2232 46667788888755332 466777665 47899987665532 245677889999999996
Q ss_pred C----CEEEEEecCCCCCeEEEEEeCCCC--------------------eeEEEecCCCCCceEEEEEcCCCCEEEEEeC
Q 001163 563 G----ARLFSCGTNKEGESYLVEWNESEG--------------------AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD 618 (1134)
Q Consensus 563 ~----~~l~~~~~~~~~~~~i~~wd~~~~--------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 618 (1134)
- ..|++++.|+ |+||.+... +.+..+..|+. .|..+.|+-.|..|.+.|.
T Consensus 235 ~Gr~y~~lAvA~kDg-----v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 235 IGRSYHLLAVATKDG-----VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred cCCceeeEEEeecCc-----EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCC
Confidence 3 3577776543 999988731 23344566665 8999999999999999999
Q ss_pred CCeEEEEEcCC
Q 001163 619 EFMIKFWDMDN 629 (1134)
Q Consensus 619 dg~i~iwd~~~ 629 (1134)
||.|++|...-
T Consensus 309 DG~VRLWkany 319 (361)
T KOG2445|consen 309 DGCVRLWKANY 319 (361)
T ss_pred Cceeeehhhhh
Confidence 99999997653
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=2.8e-19 Score=176.30 Aligned_cols=259 Identities=17% Similarity=0.247 Sum_probs=193.4
Q ss_pred cCCCeeEEEEcCC---CCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC-C
Q 001163 355 QGSAVKSMDFHPV---QQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-G 430 (1134)
Q Consensus 355 h~~~V~~v~fsp~---g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-~ 430 (1134)
|......++|+-| |.-++|.|+.-|.|+|.|+.+++.... +.+|...|+.+.|.|+ .
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~-------------------~~ghG~sINeik~~p~~~ 148 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKN-------------------YRGHGGSINEIKFHPDRP 148 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccc-------------------eeccCccchhhhcCCCCC
Confidence 6778889999865 455788888999999999999876653 7899999999999995 5
Q ss_pred CEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE---------
Q 001163 431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY--------- 501 (1134)
Q Consensus 431 ~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~--------- 501 (1134)
++|+++|.|.+|++|++++..++..+.-+.||.+.|.++.|+++|. +|+|++.|.++++|++...+...
T Consensus 149 qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd--~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~ 226 (385)
T KOG1034|consen 149 QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD--RIASCGMDHSLKLWRLNVKEFKNKLELSITYS 226 (385)
T ss_pred cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC--eeeccCCcceEEEEecChhHHhhhhhhhcccC
Confidence 7999999999999999999999987777889999999999999999 89999999999999987432110
Q ss_pred -------------------EecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcC
Q 001163 502 -------------------IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD 562 (1134)
Q Consensus 502 -------------------~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~ 562 (1134)
+-.-|...|.|+.|.. +++++-|-++.|..|.....+.... .| . -|.
T Consensus 227 ~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g----d~ilSkscenaI~~w~pgkl~e~~~------~v---k-p~e 292 (385)
T KOG1034|consen 227 PNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG----DFILSKSCENAIVCWKPGKLEESIH------NV---K-PPE 292 (385)
T ss_pred CCCccCcCCccccccccccccccccchHHHHHHHh----hheeecccCceEEEEecchhhhhhh------cc---C-CCc
Confidence 1123666677766632 5788888888888885521111100 00 0 011
Q ss_pred CCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceE--EEEEcCCCCEEEEEeCCCeEEEEEcCCCcee--EEEec
Q 001163 563 GARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVG--VVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL--ASIDA 638 (1134)
Q Consensus 563 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~ 638 (1134)
+..- .+.-++.... .+. ..+|.|-++.|+.|...|.|++||++..++. .++..
T Consensus 293 s~~T-----------i~~~~~~~~c------------~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~ 349 (385)
T KOG1034|consen 293 SATT-----------ILGEFDYPMC------------DIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTH 349 (385)
T ss_pred ccee-----------eeeEeccCcc------------ceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEe
Confidence 1000 1222222221 222 3456777899999999999999999987763 34444
Q ss_pred CCCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163 639 DGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (1134)
Q Consensus 639 ~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 671 (1134)
+.....|...+|+.||..|+...+|++|.-||.
T Consensus 350 s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 350 SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 455668999999999999999999999999984
No 159
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.82 E-value=2.1e-18 Score=169.66 Aligned_cols=409 Identities=11% Similarity=0.111 Sum_probs=258.5
Q ss_pred EEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEE
Q 001163 423 RVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI 502 (1134)
Q Consensus 423 ~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 502 (1134)
-++|||+|+|+|+++.- .+.|-|..+-+.... ----+.|..+.|..|.-. .|.....|+.|.+|++...+--..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~ql----f~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQL----FLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHH----HHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 47899999999999776 688888887654331 112456888999988874 466677899999999999998888
Q ss_pred ecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEE
Q 001163 503 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW 582 (1134)
Q Consensus 503 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 582 (1134)
+....+++.+++|+|++. .+|.+..-|-.|.+|.+.+..... +......+..++|+|||++.+.++.- |-...+.+.
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecc-cHHHHHHHH
Confidence 988899999999976543 567778889999999998755443 33344567899999999999888642 222233333
Q ss_pred eCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEEC
Q 001163 583 NESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTN 662 (1134)
Q Consensus 583 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~ 662 (1134)
.-.....++.+..... ..+.+.|+|||+.+++ ||.--.-.+..... .-.+..++|+|.+++|++|+.
T Consensus 164 ~c~~W~ll~~f~~dT~-DltgieWsPdg~~laV---------wd~~Leykv~aYe~---~lG~k~v~wsP~~qflavGsy 230 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAV---------WDNVLEYKVYAYER---GLGLKFVEWSPCNQFLAVGSY 230 (447)
T ss_pred hhHHHHHHHhcCCCcc-cccCceECCCCcEEEE---------ecchhhheeeeeee---ccceeEEEeccccceEEeecc
Confidence 3333445556665554 5678999999987765 44222112222211 225678999999999999999
Q ss_pred CCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccc
Q 001163 663 DNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPK 742 (1134)
Q Consensus 663 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1134)
|+.+|+.+--+- ..+..+.. ...
T Consensus 231 D~~lrvlnh~tW-k~f~eflh-l~s------------------------------------------------------- 253 (447)
T KOG4497|consen 231 DQMLRVLNHFTW-KPFGEFLH-LCS------------------------------------------------------- 253 (447)
T ss_pred chhhhhhceeee-eehhhhcc-chh-------------------------------------------------------
Confidence 999999764332 11111100 000
Q ss_pred cccccccc-cceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCC
Q 001163 743 IADEAVEK-SRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQA 821 (1134)
Q Consensus 743 ~~~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 821 (1134)
..|-+ ..++.-. ... -.-...++.|.|..- ...+|......+....-.
T Consensus 254 ---~~dp~~~~~~ke~-------~~~-------~ql~~~cLsf~p~~~---------~a~~~~~se~~YE~~~~p----- 302 (447)
T KOG4497|consen 254 ---YHDPTLHLLEKET-------FSI-------VQLLHHCLSFTPTDL---------EAHIWEESETIYEQQMTP----- 302 (447)
T ss_pred ---ccCchhhhhhhhh-------cch-------hhhcccccccCCCcc---------ccCccccchhhhhhhhcc-----
Confidence 00000 0000000 000 001112344444321 111111110000000000
Q ss_pred CcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeC---CeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCc
Q 001163 822 PQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASG---GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 898 (1134)
Q Consensus 822 ~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sd---g~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 898 (1134)
+. +..-+.. .+.+. ..-.+.-++||+|..++++-.| +.+.+||+...+....+. ...+|.+..|.| +..
T Consensus 303 v~---~~~lkp~-tD~pn--Pk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~p 374 (447)
T KOG4497|consen 303 VK---VHKLKPP-TDFPN--PKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRP 374 (447)
T ss_pred ee---eecccCC-CCCCC--cccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCc
Confidence 00 0000000 11111 3456778999999999999986 569999998877655554 567899999999 777
Q ss_pred EEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCc
Q 001163 899 IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQ 950 (1134)
Q Consensus 899 ~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~ 950 (1134)
.|+.......+++|.......+.. .+..-.|..+.|..+|..++.++.|.-
T Consensus 375 rL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 375 RLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred eEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 888887777899999876555543 333467999999999999999998873
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=1.1e-18 Score=180.67 Aligned_cols=274 Identities=11% Similarity=0.142 Sum_probs=204.6
Q ss_pred CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCC-EEEEEeCCCEEEEEEccCC--ceeee
Q 001163 379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT-LFGVAYSKHIVHLYTYHGG--DELRN 455 (1134)
Q Consensus 379 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~las~s~dg~v~iwd~~~~--~~~~~ 455 (1134)
.+++|||+...+.... +. .....-.|.++.|+.... .+|+.+.|..+++|.-... +.. .
T Consensus 12 d~~kl~D~s~~~~~~~--------------~~---~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp-~ 73 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSE--------------YV---HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVP-R 73 (673)
T ss_pred CceEEeecccccCccc--------------cc---cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccc-e
Confidence 3599999976553321 00 011222499999998764 2344467888999965432 111 1
Q ss_pred eeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEE
Q 001163 456 HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKA 535 (1134)
Q Consensus 456 ~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~v 535 (1134)
...+.+. .-.|++...... ++++|+..++|+|||++...+.+.+++|+..|+++.++... .+|++++..|.|.+
T Consensus 74 ~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D--eyiAsvs~gGdiii 147 (673)
T KOG4378|consen 74 VRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD--EYIASVSDGGDIII 147 (673)
T ss_pred eeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc--ceeEEeccCCcEEE
Confidence 1122222 233444333334 89999999999999999888888999999999999986544 89999999999999
Q ss_pred EecCCCCceeeecCCCC-CeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCC-CEE
Q 001163 536 WLYDNLGSRVDYDAPGH-SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK-NRF 613 (1134)
Q Consensus 536 wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l 613 (1134)
..+.+......+....+ .|.-+.|+|..+.+++...+ ++.|.+||.....++..+...+..+...+||+|.+ ..|
T Consensus 148 h~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd---~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 148 HGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD---KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred EecccCccccceecCCCCeEEEeecccccceeeEeecc---CCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence 99988777777766544 56689999998887766543 45799999998888887766666688999999987 567
Q ss_pred EEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEec
Q 001163 614 LAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVE 682 (1134)
Q Consensus 614 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 682 (1134)
++.|.|..|++||....+....+.. ..+...++|+++|.+|+.|...|.|..||+......+..+.
T Consensus 225 vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~s 290 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRS 290 (673)
T ss_pred EEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEee
Confidence 7889999999999998877777754 34678999999999999999999999999977654444443
No 161
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=1e-18 Score=175.37 Aligned_cols=267 Identities=16% Similarity=0.257 Sum_probs=188.9
Q ss_pred CceeEEEeecCCCeeEEEEcCCC-CeEEEEEeCCCcEEEEecCCccce-eeeceeeeeccccCccccccccccCCCCEEE
Q 001163 346 PKTVVMTLNQGSAVKSMDFHPVQ-QILLVVGTNMGDVMLWEVGSRERI-AVKSFKVWELGACSMPLQASLSSDYTASVNR 423 (1134)
Q Consensus 346 ~~~~~~~~~h~~~V~~v~fsp~g-~~lla~gs~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 423 (1134)
|......+.|.+.|+.+.-++-| ..++|+-+..|.|.|||+...-.. ......+-+ ....+...+.+|.+.=+.
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~ 216 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYG 216 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCcccee
Confidence 34445566788889999888875 446777788899999998643211 000000000 111112236899999999
Q ss_pred EEEcC-CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC---ce
Q 001163 424 VMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG---TK 499 (1134)
Q Consensus 424 l~~sp-d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~---~~ 499 (1134)
++||| .-..|++|..-+.|++|...+|.-..-...+.+|+..|-.++|||..+. .|+|||.|++|+|||++.+ .+
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence 99999 3345888888888999999987654444467889999999999998776 8999999999999999988 34
Q ss_pred eEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCC---CceeeecCCCCCeeEEEECcCCCE-EEEEecCCCC
Q 001163 500 QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL---GSRVDYDAPGHSSTMMAYSADGAR-LFSCGTNKEG 575 (1134)
Q Consensus 500 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~~ 575 (1134)
+.+ +.|.+.|+.|.|+... .+|++|+.||+++|||++.. ..+..+..|..+|+++.|+|.... +++++.
T Consensus 296 ~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~---- 368 (440)
T KOG0302|consen 296 VST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE---- 368 (440)
T ss_pred eEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC----
Confidence 444 7899999999996554 59999999999999999864 445678889999999999996654 444433
Q ss_pred CeEEEEEeCCCCee----------------EEEecCC-CCCceEEEEEcCCC-CEEEEEeCCCeEEEE
Q 001163 576 ESYLVEWNESEGAV----------------KRTYHGL-GKRSVGVVQFDTTK-NRFLAAGDEFMIKFW 625 (1134)
Q Consensus 576 ~~~i~~wd~~~~~~----------------~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw 625 (1134)
+.+|.+||+..-.- .+.+-.| .+..+..+.|+++- .++++.+.|| +.||
T Consensus 369 D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 369 DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred CCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 45699999863211 0011111 12245667788765 4666666776 3344
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=6.6e-19 Score=182.25 Aligned_cols=293 Identities=11% Similarity=0.186 Sum_probs=213.2
Q ss_pred ccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCc-eeeeeccCCeEEeeecCCCCCCcccccccCCCC
Q 001163 744 ADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGL-AILALASNAVHKLWKWPRNERNSTGKATTNQAP 822 (1134)
Q Consensus 744 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 822 (1134)
..+....+++||+............. ....+.++.|+.... .+++.+.|..+++|.-...
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t-----~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~-------------- 67 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQT-----AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK-------------- 67 (673)
T ss_pred eeccCCceEEeecccccCccccccCC-----CCCcceeeeccccceEEEeecCCceeEEEecccCC--------------
Confidence 34444689999998765544433322 122388888887764 2334455889999854321
Q ss_pred cccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEE
Q 001163 823 QLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIA 901 (1134)
Q Consensus 823 ~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la 901 (1134)
++++...... ....-.|++......|+++|+ .+.|+|||+....+.+.+++|...|+++.+.- .+.+||
T Consensus 68 ------~~~Vp~~~k~---~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiA 137 (673)
T KOG4378|consen 68 ------TPEVPRVRKL---TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIA 137 (673)
T ss_pred ------CCccceeecc---ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeE
Confidence 1111111111 112334555555568888888 89999999998888888999999999999998 788999
Q ss_pred EEeCCCcEEEEEcccceEEEeccCccC-ceEEEEEeeCCCE-EEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCC
Q 001163 902 IGMEDSSIQIYNVRVDEVKTKLKGHQK-RITGLAFSNTLNV-LVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALA 979 (1134)
Q Consensus 902 ~g~~dg~i~iwd~~~~~~~~~l~~h~~-~V~~l~~s~d~~~-l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 979 (1134)
+++..|.|.|..+.++.....|....+ .|.-+.||+..++ |.+++.+|.|.+||+.... ......+.|. .+
T Consensus 138 svs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s----p~~~~~~~Hs---AP 210 (673)
T KOG4378|consen 138 SVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS----PIFHASEAHS---AP 210 (673)
T ss_pred EeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC----cccchhhhcc---CC
Confidence 999999999999999987777775534 4558899987765 5678999999999998743 2333334444 57
Q ss_pred ceEEEEcCCCCEEEE--EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceee
Q 001163 980 DTRVQFHLDQTHLLA--VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCR 1057 (1134)
Q Consensus 980 v~~l~fs~dg~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~ 1057 (1134)
...++|+|....|++ |.|..|.+||+........+.. ..+.+.++|+++|.+|+.|+..|.|..||+...+.-.
T Consensus 211 ~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv- 286 (673)
T KOG4378|consen 211 CRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV- 286 (673)
T ss_pred cCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCCc-
Confidence 888999998877766 7999999999997777766653 6789999999999999999999999999997654321
Q ss_pred cCCCcccCCCCCCCceeEEEEecC
Q 001163 1058 INPTAYLPTNPSLRVYPLVIAGNP 1081 (1134)
Q Consensus 1058 ~~~~~~~~~~h~~~v~~~~~~~~p 1081 (1134)
-..+.|...|+.+++..+|
T Consensus 287 -----~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 287 -----AVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred -----eEeeecccceeEEEeeecc
Confidence 1223578889888555443
No 163
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=9.4e-16 Score=179.94 Aligned_cols=372 Identities=23% Similarity=0.395 Sum_probs=278.2
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCc-eeeeeeeeecCC-CCEEEEEE-ecCCCceEEEEEeCCCeEE
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD-ELRNHLEIEAHV-GSVNDLAF-SYPNKQLSVVTCGEDRVIK 490 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~-~~~~~~~l~~h~-~~V~~v~~-s~~~~~~~l~s~s~d~~i~ 490 (1134)
...|...|.++.|.+.+..++.++.|+.+.+|+...+. .+. .+.++. ..+..+.+ ++++....+..+..|+.+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK---SLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE---EEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 46799999999999999999999999999999999876 333 355533 37777777 7777632333345599999
Q ss_pred EEECCC-CceeEEecCCCcCEEEEeccccCCccEEEEecC-CCcEEEEecCCCCceeeecCCCCCeeEEEECcCCC-EEE
Q 001163 491 VWDAVT-GTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGA-RLF 567 (1134)
Q Consensus 491 iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~ 567 (1134)
+||... ......+..|...|..++|++.. ..+++++. |+.+++|+.........+..+...+.+++|+|++. .++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 215 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDG--KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA 215 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCC--CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEE
Confidence 999988 78888999999999999987655 57888875 99999999998777777777888999999999998 444
Q ss_pred EEecCCCCCeEEEEEeCCCCeeEE-EecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce-eEEEecCCCCCCc
Q 001163 568 SCGTNKEGESYLVEWNESEGAVKR-TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL-LASIDADGGLQAS 645 (1134)
Q Consensus 568 ~~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v 645 (1134)
+++. +..+.+||...+.... .+.+|.. .. ...|++++..+++++.|+.+++|+...... +..+ .++...+
T Consensus 216 ~~~~----d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~v 287 (466)
T COG2319 216 SGSS----DGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSV 287 (466)
T ss_pred EecC----CCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--ecCCccE
Confidence 4343 3458899998888887 6777776 33 338999998999999999999999987665 4444 3446789
Q ss_pred ceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCccccc
Q 001163 646 PCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAA 725 (1134)
Q Consensus 646 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 725 (1134)
.++.|+|++..+++++.|+.+.+|+..... ......
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~------------------------------------------- 323 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLETGK-LLSSLT------------------------------------------- 323 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCCCc-eEEEee-------------------------------------------
Confidence 999999988888889999999999776652 111110
Q ss_pred ccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeee-ccCCeEEeee
Q 001163 726 MVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILAL-ASNAVHKLWK 804 (1134)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~-~~dg~i~vw~ 804 (1134)
...|...+..+.|.+++..++.+ ..|+.+.+|+
T Consensus 324 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 324 ----------------------------------------------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred ----------------------------------------------ecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 00134457777773332455555 5678888887
Q ss_pred cCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEE-ee-CCeEEEEEccCCeEEEEecC
Q 001163 805 WPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMS-AS-GGKISLFNMMTFKTMTTFMP 882 (1134)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~-~s-dg~i~lwd~~~~~~~~~~~~ 882 (1134)
+.... .... .. ....+..+.+++ ...+.. +. ++.+.+|+............
T Consensus 358 ~~~~~---------------------~~~~--~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (466)
T COG2319 358 LRTGK---------------------PLKT--LE---GHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDG 410 (466)
T ss_pred cCCCc---------------------eeEE--ec---CCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccC
Confidence 65321 0000 10 112278888888 544444 34 78999999998888777765
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc
Q 001163 883 PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV 916 (1134)
Q Consensus 883 ~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~ 916 (1134)
+...+....+++ ++..++.++.++.+++|+..+
T Consensus 411 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 411 HTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCCcEEEEEECC-CCcEEEEecCCCcEEEEeccC
Confidence 447899999999 888999999999999999987
No 164
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=7.6e-19 Score=176.27 Aligned_cols=173 Identities=21% Similarity=0.389 Sum_probs=144.7
Q ss_pred CceeEEEee-cCCCeeEEEEcC--CCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEE
Q 001163 346 PKTVVMTLN-QGSAVKSMDFHP--VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVN 422 (1134)
Q Consensus 346 ~~~~~~~~~-h~~~V~~v~fsp--~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 422 (1134)
..+.+.+++ |...=++++||| .|+ +++|..-+.|++|...+|.-... ..-+.+|+..|-
T Consensus 200 ~~~Pl~t~~ghk~EGy~LdWSp~~~g~--LlsGDc~~~I~lw~~~~g~W~vd----------------~~Pf~gH~~SVE 261 (440)
T KOG0302|consen 200 EFRPLFTFNGHKGEGYGLDWSPIKTGR--LLSGDCVKGIHLWEPSTGSWKVD----------------QRPFTGHTKSVE 261 (440)
T ss_pred ccCceEEecccCccceeeecccccccc--cccCccccceEeeeeccCceeec----------------Cccccccccchh
Confidence 456777777 899999999999 454 57888889999999988753221 111567999999
Q ss_pred EEEEcC-CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC---Cc
Q 001163 423 RVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT---GT 498 (1134)
Q Consensus 423 ~l~~sp-d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~---~~ 498 (1134)
.++||| ....+|+||.||+|+|||++.+..-... ..+.|.+.|+.+.|+.+-. +|++|+.||+++|||+++ ++
T Consensus 262 DLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~ 338 (440)
T KOG0302|consen 262 DLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQ 338 (440)
T ss_pred hhccCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCC
Confidence 999999 4568999999999999999998433333 2488999999999998887 899999999999999874 57
Q ss_pred eeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCC
Q 001163 499 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540 (1134)
Q Consensus 499 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 540 (1134)
++..|+-|..+|+++.|+|..+ ..|++++.|..|.+||+..
T Consensus 339 pVA~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 339 PVATFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSV 379 (440)
T ss_pred cceeEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeec
Confidence 8889999999999999998776 5788889999999999864
No 165
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=1.2e-18 Score=171.75 Aligned_cols=339 Identities=18% Similarity=0.256 Sum_probs=228.7
Q ss_pred cccccCCCCEEEEEEcC----C-CCEEEEEeCCCEEEEEEccCCceeeeeeee--ecCCCCEEEEEEecCCC--ceEEEE
Q 001163 412 SLSSDYTASVNRVMWSP----D-GTLFGVAYSKHIVHLYTYHGGDELRNHLEI--EAHVGSVNDLAFSYPNK--QLSVVT 482 (1134)
Q Consensus 412 ~~~~~h~~~V~~l~~sp----d-~~~las~s~dg~v~iwd~~~~~~~~~~~~l--~~h~~~V~~v~~s~~~~--~~~l~s 482 (1134)
.+..+|+.+|..++|++ + -..+|+.+. ..+.+|+......++.+... ..|......++|+-|.. ..++|.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34678999999999996 2 234555544 46899988765433322222 24788899999987643 348899
Q ss_pred EeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee---cCCCCCeeEEEE
Q 001163 483 CGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY---DAPGHSSTMMAY 559 (1134)
Q Consensus 483 ~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~ 559 (1134)
|+.-|.|+|.|+.++++...+.+|...|+.+.++|... ++++++|.|.+||+|++++..++..+ .+|...|.++.|
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~-qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP-QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCCCC-cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 99999999999999999999999999999999988654 79999999999999999999888875 457779999999
Q ss_pred CcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC
Q 001163 560 SADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD 639 (1134)
Q Consensus 560 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 639 (1134)
+++|.++++++.|. .|.+|++...+....++. +..|+|++...-.- .-...+.++. +..
T Consensus 190 ~~~gd~i~ScGmDh----slk~W~l~~~~f~~~lE~-------s~~~~~~~t~~pfp--t~~~~fp~fs------t~d-- 248 (385)
T KOG1034|consen 190 SLDGDRIASCGMDH----SLKLWRLNVKEFKNKLEL-------SITYSPNKTTRPFP--TPKTHFPDFS------TTD-- 248 (385)
T ss_pred cCCCCeeeccCCcc----eEEEEecChhHHhhhhhh-------hcccCCCCccCcCC--cccccccccc------ccc--
Confidence 99999999998754 599999986544332222 23455554321000 0011222221 112
Q ss_pred CCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCC
Q 001163 640 GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGER 719 (1134)
Q Consensus 640 ~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 719 (1134)
-|...|-|+.|- |+++++-+-++.|..|......+.+..........
T Consensus 249 iHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~------------------------------- 295 (385)
T KOG1034|consen 249 IHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESAT------------------------------- 295 (385)
T ss_pred cccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccce-------------------------------
Confidence 346678888886 57999988899999998632211111111100000
Q ss_pred CcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCe
Q 001163 720 TAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAV 799 (1134)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~ 799 (1134)
.....+..+. -.-.....+|.|-++.|+.|.+.|.
T Consensus 296 -------------------------------------------Ti~~~~~~~~--c~iWfirf~~d~~~~~la~gnq~g~ 330 (385)
T KOG1034|consen 296 -------------------------------------------TILGEFDYPM--CDIWFIRFAFDPWQKMLALGNQSGK 330 (385)
T ss_pred -------------------------------------------eeeeEeccCc--cceEEEEEeecHHHHHHhhccCCCc
Confidence 0000011110 1122334577788999999999999
Q ss_pred EEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEcc
Q 001163 800 HKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMM 872 (1134)
Q Consensus 800 i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~ 872 (1134)
+.+||+..... .+...+... --...|+..+||.||.+|+... |++|.-||.-
T Consensus 331 v~vwdL~~~ep-----------------~~~ttl~~s----~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 331 VYVWDLDNNEP-----------------PKCTTLTHS----KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEECCCCCC-----------------ccCceEEec----cccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999875422 111111111 1356789999999999888776 8999999853
No 166
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=4.2e-17 Score=177.91 Aligned_cols=627 Identities=11% Similarity=0.083 Sum_probs=362.6
Q ss_pred CCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC-------
Q 001163 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD------- 429 (1134)
Q Consensus 357 ~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd------- 429 (1134)
..-.++.|+|.| |+|.|+. ..|.+-|..+-+.+.. +..|...|+.+.|.|-
T Consensus 16 sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ll 73 (1062)
T KOG1912|consen 16 SNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRDLL 73 (1062)
T ss_pred ccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchhcc
Confidence 345689999999 6777765 3688889887776653 5669999999999872
Q ss_pred -----CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecC---CCceEEEEEeCCCeEEEEECCCCceeE
Q 001163 430 -----GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP---NKQLSVVTCGEDRVIKVWDAVTGTKQY 501 (1134)
Q Consensus 430 -----~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~---~~~~~l~s~s~d~~i~iwd~~~~~~~~ 501 (1134)
.-+||++...|.|.+||...+.... .++.|..++..++|-+. .+. +|+.-..-.++.+|+..+|+...
T Consensus 74 S~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~W 149 (1062)
T KOG1912|consen 74 SPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKFW 149 (1062)
T ss_pred CccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCceee
Confidence 1267888889999999999887554 57789999999999763 323 66666777899999999999998
Q ss_pred EecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCC------ceeeecCC-C------------C----------
Q 001163 502 IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG------SRVDYDAP-G------------H---------- 552 (1134)
Q Consensus 502 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~------~~~~~~~~-~------------~---------- 552 (1134)
..........|+.+.|-...++.+.+ ..|.+.+.+.-... ....+... . .
T Consensus 150 k~~ys~~iLs~f~~DPfd~rh~~~l~-s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~ 228 (1062)
T KOG1912|consen 150 KYDYSHEILSCFRVDPFDSRHFCVLG-SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAY 228 (1062)
T ss_pred ccccCCcceeeeeeCCCCcceEEEEc-cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchh
Confidence 87766666777777665443444444 44666555432111 11111110 0 0
Q ss_pred ---CeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCC--CEEEEEeCCCeEEEEEc
Q 001163 553 ---SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK--NRFLAAGDEFMIKFWDM 627 (1134)
Q Consensus 553 ---~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~ 627 (1134)
-...++|+|.-+.++.....+ .+.++|++-..++....-..+ .+.-+.+-|+. ..|++.-.||.+.+|-.
T Consensus 229 fity~a~faf~p~~rn~lfi~~pr----ellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 229 FITYCAQFAFSPHWRNILFITFPR----ELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred HHHHHHhhhcChhhhceEEEEecc----ceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 012356788666555444433 399999998888877765554 44556666655 67899999999999976
Q ss_pred CC----------------CceeEEEecCCCCCCcceEEEcCC-CcEEEEEECCCcEEEEEccCCceeEEEeccCcccccc
Q 001163 628 DN----------------VNLLASIDADGGLQASPCIRFNKE-GILLAVSTNDNGIKILANADGIRLLRTVESRTFDASR 690 (1134)
Q Consensus 628 ~~----------------~~~~~~~~~~~~~~~v~~v~~sp~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 690 (1134)
+. ++....+...... ........|. ...++.--.+|.+.+|.+.++........+.......
T Consensus 304 k~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~p 382 (1062)
T KOG1912|consen 304 KEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLP 382 (1062)
T ss_pred eccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccccc
Confidence 54 2222222211111 1223333443 4455555667888899988652111111100000000
Q ss_pred cchhhhhcccccccccccccccccCc-------CCCCcccc--cccCCCCCCc-cCcccccccccccccccceeeecccC
Q 001163 691 VASAAIVKAPAIGTFGSANANVGTSL-------GERTAPAA--AMVGMSNDSR-NFTDVKPKIADEAVEKSRIWKLTEIT 760 (1134)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~s~~~-------~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~d~~i~iw~~~~~~ 760 (1134)
.... ...+.........++.|+ +.+..|+. +.+.-.+.++ .......++.|...|+|.++|+....
T Consensus 383 f~f~----~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~ 458 (1062)
T KOG1912|consen 383 FDFN----LSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNA 458 (1062)
T ss_pred cccc----CceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchh
Confidence 0000 000000111111233332 11222222 2222222111 12233556788889999999998644
Q ss_pred CccceeccccCCccccccEEEEEEecCCceeeeeccC--CeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCC
Q 001163 761 EPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN--AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS 838 (1134)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 838 (1134)
..... ..|...|.++.|....+.+-.+... ....+ ....+.+-|+.+|.-....-.
T Consensus 459 v~~~f-------svht~~VkgleW~g~sslvSfsys~~n~~sg~---------------vrN~l~vtdLrtGlsk~fR~l 516 (1062)
T KOG1912|consen 459 VAASF-------SVHTSLVKGLEWLGNSSLVSFSYSHVNSASGG---------------VRNDLVVTDLRTGLSKRFRGL 516 (1062)
T ss_pred hhhhh-------cccccceeeeeeccceeEEEeeeccccccccc---------------eeeeEEEEEcccccccccccC
Confidence 33222 2388999999998887755444331 10011 111234457777765443321
Q ss_pred CCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEc-CC---------------CCcEEE
Q 001163 839 DTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFH-PQ---------------DNNIIA 901 (1134)
Q Consensus 839 ~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~s-p~---------------~~~~la 901 (1134)
....+.+|+.+..|.-|+||+..- +.-+.+||+.+..+++.....-.-++.++|+ |. ..+.++
T Consensus 517 ~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv 596 (1062)
T KOG1912|consen 517 QKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVV 596 (1062)
T ss_pred CCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhceee
Confidence 224678999999999999999998 8889999998888777665455558999998 31 112333
Q ss_pred EEeCCCcEEEEEccc-------ceE-EEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCC
Q 001163 902 IGMEDSSIQIYNVRV-------DEV-KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGR 973 (1134)
Q Consensus 902 ~g~~dg~i~iwd~~~-------~~~-~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 973 (1134)
..+ +..+++.+.. +.. ....+...-.+.+++| .+..|+.|..+|.+.+||+....... ....+..
T Consensus 597 ~ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg--~~d~p~~- 669 (1062)
T KOG1912|consen 597 LDS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRG--VRDSPDP- 669 (1062)
T ss_pred ecc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccC--ccCCCCc-
Confidence 333 2334443321 111 1111222233445666 47789999999999999987633221 0111110
Q ss_pred CCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCc
Q 001163 974 TASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLR 1053 (1134)
Q Consensus 974 ~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~ 1053 (1134)
........+-|....+++-...-+-+||.+....+..+....-+-.+..+.+......++ ..|+++|+-.+....
T Consensus 670 ---ra~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~~m~mks 744 (1062)
T KOG1912|consen 670 ---RAHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVL--PNDNKERFRVMPMKS 744 (1062)
T ss_pred ---hhhheecccCCCCceEEEEecCcceecccccceeeeeeccCCcceEEEEEEecccCceec--CCCCceeEEeccccC
Confidence 022334445565444445455668899998887777664222234455555544433333 234467766655444
Q ss_pred c
Q 001163 1054 L 1054 (1134)
Q Consensus 1054 ~ 1054 (1134)
.
T Consensus 745 ~ 745 (1062)
T KOG1912|consen 745 P 745 (1062)
T ss_pred C
Confidence 3
No 167
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=2.4e-18 Score=169.14 Aligned_cols=288 Identities=15% Similarity=0.205 Sum_probs=208.3
Q ss_pred eeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc-------CCCC
Q 001163 359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS-------PDGT 431 (1134)
Q Consensus 359 V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-------pd~~ 431 (1134)
...+.|||||..| .+-+.|..+.+|++...-.-....-. ...+....+-......|...+|- |+..
T Consensus 52 ~kgckWSPDGSci-L~~sedn~l~~~nlP~dlys~~~~~~------~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 52 LKGCKWSPDGSCI-LSLSEDNCLNCWNLPFDLYSKKADGP------LNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred hccceeCCCCceE-EeecccCeeeEEecChhhcccCCCCc------cccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 3478999999966 46788999999998532110000000 00000111111234577777775 6788
Q ss_pred EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCC---EEEEEEecCCCceEEEEEeCCCeEEEEEC-CCCcee--EEec-
Q 001163 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGS---VNDLAFSYPNKQLSVVTCGEDRVIKVWDA-VTGTKQ--YIFE- 504 (1134)
Q Consensus 432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~---V~~v~~s~~~~~~~l~s~s~d~~i~iwd~-~~~~~~--~~~~- 504 (1134)
++|+.+.+.-|++||.-+|+..... ....|... -.+++|+|||.+ |+ ++..++|+++|+ +.|+.- +...
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy-~~ydh~de~taAhsL~Fs~DGeq--lf-aGykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASY-RAYDHQDEYTAAHSLQFSPDGEQ--LF-AGYKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eeeeccccCceeeeeccccccccch-hhhhhHHhhhhheeEEecCCCCe--Ee-ecccceEEEeeccCCCCCCcchhhhh
Confidence 9999999999999999999854422 23335443 468999999994 44 456689999998 555432 2221
Q ss_pred ----CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEE
Q 001163 505 ----GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 580 (1134)
Q Consensus 505 ----~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 580 (1134)
+..+-|.+++|+|... ..++.++...++-++.-...+....+.+|.+.|+.+.|.++|+.|++++.- +..|.
T Consensus 201 ~~k~gq~giisc~a~sP~~~-~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk---~dkIl 276 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDS-KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK---DDKIL 276 (406)
T ss_pred cccccccceeeeeeccCCCC-cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC---CCeEE
Confidence 2366788889988654 589999999999999888888888888999999999999999999998753 44699
Q ss_pred EEeCCCC-eeEEEecCCCCCceEE--EEEcCCCCEEEEEeCCCeEEEEEcCC-CceeEEEecCCCCCCcceEEEcCCCcE
Q 001163 581 EWNESEG-AVKRTYHGLGKRSVGV--VQFDTTKNRFLAAGDEFMIKFWDMDN-VNLLASIDADGGLQASPCIRFNKEGIL 656 (1134)
Q Consensus 581 ~wd~~~~-~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp~~~~ 656 (1134)
+||++.. .++..+..|....-.. ....|++++|++|+.||.|++||+.+ +..+..+..+ ...++.++++|--.+
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~--sd~vNgvslnP~mpi 354 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY--SDTVNGVSLNPIMPI 354 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc--cccccceecCcccce
Confidence 9999864 5556666654422223 34568899999999999999999998 7767776655 668999999999888
Q ss_pred EEEEECC
Q 001163 657 LAVSTND 663 (1134)
Q Consensus 657 l~~~~~d 663 (1134)
+++++..
T Consensus 355 latssGq 361 (406)
T KOG2919|consen 355 LATSSGQ 361 (406)
T ss_pred eeeccCc
Confidence 8887754
No 168
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=2.7e-18 Score=173.32 Aligned_cols=237 Identities=15% Similarity=0.224 Sum_probs=186.9
Q ss_pred ccccCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEEccCCcee----eeeeeeecCCCCEEEEEEecCCCceEEEEEeCCC
Q 001163 413 LSSDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDEL----RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR 487 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~sp-d~~~las~s~dg~v~iwd~~~~~~~----~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~ 487 (1134)
.+.||+++|..++|+| +...+|+||.|.+|.||++..+... .....|.||...|-.++|+|...+ .|+|++.|+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 4789999999999999 7889999999999999999765432 234468999999999999998877 799999999
Q ss_pred eEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCC-CeeEEEECcCCCEE
Q 001163 488 VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH-SSTMMAYSADGARL 566 (1134)
Q Consensus 488 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l 566 (1134)
+|.+||+.+|+.+.++. |...|.+++|+ .||.++++.+.|+.|||||.+.++....-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 99999999999999988 99999999985 4568999999999999999998887777655554 455667888888 7
Q ss_pred EEEecCCCCCeEEEEEeCCCCee-EEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCce-eEEEecCCCCC
Q 001163 567 FSCGTNKEGESYLVEWNESEGAV-KRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNL-LASIDADGGLQ 643 (1134)
Q Consensus 567 ~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~~~ 643 (1134)
++.+.++-.+..+-+||...-+. +..........|.--.|.+|.+.++.+| .|+.|+-|.+....+ +..+.......
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~e 310 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKE 310 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCC
Confidence 77777777788999999775432 2222223333566667889999888887 899999999987663 33333222334
Q ss_pred CcceEEEcCCC
Q 001163 644 ASPCIRFNKEG 654 (1134)
Q Consensus 644 ~v~~v~~sp~~ 654 (1134)
+-..+.|-|..
T Consensus 311 pQRG~g~mPKR 321 (472)
T KOG0303|consen 311 PQRGMGFMPKR 321 (472)
T ss_pred ccccccccccc
Confidence 45567777653
No 169
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=4.2e-19 Score=203.54 Aligned_cols=261 Identities=14% Similarity=0.170 Sum_probs=201.2
Q ss_pred EEEeecCCCeeEEEEcCCCCe---EEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEE
Q 001163 350 VMTLNQGSAVKSMDFHPVQQI---LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (1134)
Q Consensus 350 ~~~~~h~~~V~~v~fsp~g~~---lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 426 (1134)
+-.+......+.++|.+.|.. +||.|..||.|.+||...-. ... ... .......|++.|..+.|
T Consensus 58 ~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~--~~~----------~~~-~la~~~~h~G~V~gLDf 124 (1049)
T KOG0307|consen 58 VGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII--ANA----------SEE-VLATKSKHTGPVLGLDF 124 (1049)
T ss_pred cccccccccceeeeecccCCCccceeeccccCCceEEecchhhc--cCc----------chH-HHhhhcccCCceeeeec
Confidence 334445678899999998887 68999999999999986520 000 000 11125779999999999
Q ss_pred cCC-CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecC
Q 001163 427 SPD-GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 505 (1134)
Q Consensus 427 spd-~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 505 (1134)
++. +++||+|+.||.|.|||+..-+...... -..-.+.|.+++|+..-.+ .|++++.+|.+.|||++..+.+-.+..
T Consensus 125 N~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~ 202 (1049)
T KOG0307|consen 125 NPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSD 202 (1049)
T ss_pred cccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCccccccc
Confidence 995 5599999999999999998754332111 1124567999999987766 799999999999999999988877766
Q ss_pred CCc--CEEEEeccccCCccEEEEecCC-C--cEEEEecCCCC-ceeeecCCCCCeeEEEECcCC-CEEEEEecCCCCCeE
Q 001163 506 HES--PVYSICPHHKENIQFIFSTATD-G--KIKAWLYDNLG-SRVDYDAPGHSSTMMAYSADG-ARLFSCGTNKEGESY 578 (1134)
Q Consensus 506 h~~--~v~~~~~~~~~~~~~l~s~s~d-g--~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~ 578 (1134)
|.+ .+..+.|+|+... .|++++.| + .|.+||++... ....+..|...|.++.|++.+ ++|++++.|+ .
T Consensus 203 ~~~~~~~S~l~WhP~~aT-ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~----~ 277 (1049)
T KOG0307|consen 203 TPGRMHCSVLAWHPDHAT-QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDN----R 277 (1049)
T ss_pred CCCccceeeeeeCCCCce-eeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCC----C
Confidence 654 4678899987764 45555544 3 49999988654 444567888899999999977 7778877544 5
Q ss_pred EEEEeCCCCeeEEEecCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCc
Q 001163 579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNVN 631 (1134)
Q Consensus 579 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 631 (1134)
|.+|+.++++.+..+....+ .+..+.|+|... .+++++.||.|.|+.+.+..
T Consensus 278 ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 278 IICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999999999999988554 899999999886 67777899999999987654
No 170
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.80 E-value=7.3e-18 Score=173.73 Aligned_cols=313 Identities=11% Similarity=0.103 Sum_probs=222.9
Q ss_pred ECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCC----CceeeecCCCCCeeEEEECcCC-CEEE
Q 001163 493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL----GSRVDYDAPGHSSTMMAYSADG-ARLF 567 (1134)
Q Consensus 493 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~s~~~-~~l~ 567 (1134)
|+.+-......+-+..+|++++|+|..+..++++|+.-|.|-+||+... .....+..|..+|.++.|+|.. ..++
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhee
Confidence 3344445555666889999999999998889999999999999999532 2344567788899999999955 5677
Q ss_pred EEecCCCCCeEEEEEeCCCCeeEEEecCC-CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce-eEEEecCCCCCCc
Q 001163 568 SCGTNKEGESYLVEWNESEGAVKRTYHGL-GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL-LASIDADGGLQAS 645 (1134)
Q Consensus 568 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v 645 (1134)
+.+.|+ .|++-|++.+.....+... ....+..+.|+.+...++.++.=|.+.+||++++.. ...+..| ...|
T Consensus 252 ssSyDG----tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh--~kKI 325 (498)
T KOG4328|consen 252 SSSYDG----TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLH--KKKI 325 (498)
T ss_pred eeccCc----eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhh--hccc
Confidence 776644 5999999876443333331 122567788888888899998888999999997654 5555555 4489
Q ss_pred ceEEEcC-CCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccc
Q 001163 646 PCIRFNK-EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAA 724 (1134)
Q Consensus 646 ~~v~~sp-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 724 (1134)
..++++| ...+|++++.|++.+|||+.... +....
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~-------~K~sp------------------------------------- 361 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLR-------GKASP------------------------------------- 361 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhc-------CCCCc-------------------------------------
Confidence 9999999 45789999999999999986531 10000
Q ss_pred cccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeee
Q 001163 725 AMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK 804 (1134)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~ 804 (1134)
.+.. ..|...|.+..|||+|..|++.+.|..|+|||
T Consensus 362 ---------------------------~lst-----------------~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 362 ---------------------------FLST-----------------LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred ---------------------------ceec-----------------ccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence 0001 12888999999999999999999999999998
Q ss_pred cCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCC
Q 001163 805 WPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPP 883 (1134)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~ 883 (1134)
.. .+.-|+...+........+ .--.....+|.||..++++|. -..|-|+|-..++.+..+..+
T Consensus 398 ss--------------~~sa~~~p~~~I~Hn~~t~--RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P 461 (498)
T KOG4328|consen 398 SS--------------CISAKDEPLGTIPHNNRTG--RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP 461 (498)
T ss_pred cc--------------cccccCCccceeeccCccc--ccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCc
Confidence 53 1112233333322211111 011123468999999999998 677999999999988887554
Q ss_pred CC-CeEE-EEEcCCCCcEEEEEeCCCcEEEEEcc
Q 001163 884 PP-AATF-LAFHPQDNNIIAIGMEDSSIQIYNVR 915 (1134)
Q Consensus 884 ~~-~v~~-l~~sp~~~~~la~g~~dg~i~iwd~~ 915 (1134)
.. .|.+ ..|+|-+..++|-++..|.|+||.-+
T Consensus 462 ~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 462 ESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccccccceeecccccceeccCCccceEEEEecC
Confidence 43 4554 57999444466666778889988644
No 171
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=3.2e-18 Score=175.87 Aligned_cols=266 Identities=11% Similarity=0.143 Sum_probs=189.1
Q ss_pred CeeEEEEcCC-------CCeEEEEEeCCCcEEEEecCCccceeeeceeeeecc---ccCccccccccccCCCCEEEEEEc
Q 001163 358 AVKSMDFHPV-------QQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELG---ACSMPLQASLSSDYTASVNRVMWS 427 (1134)
Q Consensus 358 ~V~~v~fsp~-------g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~V~~l~~s 427 (1134)
...|++|... |+ ++|.|+.|..|.|||+.-...+.- .+.+=... ............+|++.|.+++|+
T Consensus 175 fPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~P-~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n 252 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVLP-CVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN 252 (463)
T ss_pred cchhhhhhhcCCCCCCCcc-eEEEeccCceeEEecccccccccc-ceeechhhhhhhhhhcccccccccchHHHHHHHhc
Confidence 3456666433 45 679999999999999864322210 00000000 000001112245899999999999
Q ss_pred C-CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCC
Q 001163 428 P-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH 506 (1134)
Q Consensus 428 p-d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h 506 (1134)
. -.+.||+||.|.+|++||+.+|++.. ++..|.+.|.+++|+|.... +|++|+.|++|.+.|.+........-..
T Consensus 253 ~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk~ 328 (463)
T KOG0270|consen 253 RNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWKF 328 (463)
T ss_pred cccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEEe
Confidence 8 46789999999999999999998665 67789999999999998776 8999999999999999854333222235
Q ss_pred CcCEEEEeccccCCccEEEEecCCCcEEEEecCCC-CceeeecCCCCCeeEEEECcCCCEE-EEEecCCCCCeEEEEEeC
Q 001163 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVDYDAPGHSSTMMAYSADGARL-FSCGTNKEGESYLVEWNE 584 (1134)
Q Consensus 507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~~~~~~i~~wd~ 584 (1134)
.+.|-.++|.+... ..++++..||+|+-+|++.. ++...+..|..+|.++++++.-..+ ++++ .+..+.+|++
T Consensus 329 ~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s----~d~~Vklw~~ 403 (463)
T KOG0270|consen 329 DGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS----TDKVVKLWKF 403 (463)
T ss_pred ccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc----ccceEEEEee
Confidence 67788899987654 67888899999999999987 6778889999999999999876654 4444 3557999998
Q ss_pred CCCeeEEEecC-CCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCceeE
Q 001163 585 SEGAVKRTYHG-LGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNVNLLA 634 (1134)
Q Consensus 585 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~ 634 (1134)
........... ..-+...|.++.|+-. .++.|+..+.++|||+.+...+.
T Consensus 404 ~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 404 DVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred cCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 75443221111 1111355667777764 45667788889999998876543
No 172
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=1.4e-17 Score=163.70 Aligned_cols=227 Identities=15% Similarity=0.158 Sum_probs=169.9
Q ss_pred ecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCC---CCeeEEEEcCCCCeEEEe
Q 001163 785 TNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPE---DAVPCFALSKNDSYVMSA 861 (1134)
Q Consensus 785 spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~---~~v~~v~~s~dg~~la~~ 861 (1134)
-|+..++++.+.+.-|++||.-+++ +... .....|. ....+++|+|||..|.+|
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~----------------------lraS-y~~ydh~de~taAhsL~Fs~DGeqlfaG 176 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGK----------------------LRAS-YRAYDHQDEYTAAHSLQFSPDGEQLFAG 176 (406)
T ss_pred CCccceeeeccccCceeeeeccccc----------------------cccc-hhhhhhHHhhhhheeEEecCCCCeEeec
Confidence 3677788888899999988765432 2111 1111122 234689999999999999
Q ss_pred eCCeEEEEEc-cCCeEE---EEec----CCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEE
Q 001163 862 SGGKISLFNM-MTFKTM---TTFM----PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGL 933 (1134)
Q Consensus 862 sdg~i~lwd~-~~~~~~---~~~~----~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l 933 (1134)
...+|+++|+ ..|+.- .++. +..+-+.|++|+|.+.+.+|+|+....+-||.-..+.++..+-+|.+.|+.+
T Consensus 177 ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL 256 (406)
T KOG2919|consen 177 YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHL 256 (406)
T ss_pred ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeE
Confidence 9999999999 444321 2221 2346689999999888899999999999999999999999999999999999
Q ss_pred EEeeCCCEEEEEeC-CCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEE--cCCCCEEEEE-eeceEEEEeCCC-c
Q 001163 934 AFSNTLNVLVSSGA-DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQF--HLDQTHLLAV-HETQIAIYEAPK-L 1008 (1134)
Q Consensus 934 ~~s~d~~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~f--s~dg~~l~~~-~d~~i~iwd~~~-~ 1008 (1134)
.|.+||+.|++|+. |..|..||+...+. .+-....|.. ..-..+-| .|+|++|++| .||.|++||+++ +
T Consensus 257 ~~~edGn~lfsGaRk~dkIl~WDiR~~~~----pv~~L~rhv~--~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 257 QWCEDGNKLFSGARKDDKILCWDIRYSRD----PVYALERHVG--DTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred EeccCcCeecccccCCCeEEEEeehhccc----hhhhhhhhcc--CccceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence 99999999999986 67899999976432 1212222221 12344544 6889999996 999999999998 5
Q ss_pred ccceeeccCCCccCEEEEEEccCCCEEEEEecCC
Q 001163 1009 ECLKQFVPREASGPITHATYSCDSQSIYVAFEEG 1042 (1134)
Q Consensus 1009 ~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg 1042 (1134)
+.+..+. .|+..+..+++.|-=.++++++...
T Consensus 331 n~~sv~~--~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 331 NEVSVTG--NYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred Ccccccc--cccccccceecCcccceeeeccCce
Confidence 5454444 6789999999999977788877543
No 173
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.79 E-value=1.9e-17 Score=168.38 Aligned_cols=301 Identities=17% Similarity=0.184 Sum_probs=216.1
Q ss_pred cccEEEEEEecCCc-eeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163 776 AMRVSRLIYTNSGL-AILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 854 (1134)
Q Consensus 776 ~~~i~~l~~spdg~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d 854 (1134)
..++.++.|.+++. .+++++.|..|++|.+........+. .......+.. |...|+++.|+|+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~--------------~V~y~s~Ls~--H~~aVN~vRf~p~ 76 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDM--------------KVEYLSSLSR--HTRAVNVVRFSPD 76 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCce--------------eEEEeecccC--CcceeEEEEEcCC
Confidence 46789999999877 99999999999999887543211110 0111222444 9999999999999
Q ss_pred CCeEEEee-CCeEEEEEcc--------C--------CeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccc
Q 001163 855 DSYVMSAS-GGKISLFNMM--------T--------FKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD 917 (1134)
Q Consensus 855 g~~la~~s-dg~i~lwd~~--------~--------~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~ 917 (1134)
|.+||+|+ +|.|.+|-.. + +...+.+.+|...|..++|+| ++.++++|+-|..+++||+..|
T Consensus 77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccc
Confidence 99999999 6889999764 2 345566788999999999999 9999999999999999999999
Q ss_pred eEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccce----------------eeeecCCCCCCCCCce
Q 001163 918 EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASK----------------FLTIPNGRTASALADT 981 (1134)
Q Consensus 918 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~----------------~~~~~~~~~~~~~~v~ 981 (1134)
+....+.+|..-+..++|.|-++++++-+.|...+.+++...+..... ...+..... ...-..
T Consensus 156 ~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeT-lksFFr 234 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDET-LKSFFR 234 (434)
T ss_pred eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCc-hhhhhh
Confidence 999999999999999999999999999999998777776553322110 011111000 012346
Q ss_pred EEEEcCCCCEEEEE-----eece-----EEEEeCCCcc-cceeeccCCCccCEEEEEEcc------------------CC
Q 001163 982 RVQFHLDQTHLLAV-----HETQ-----IAIYEAPKLE-CLKQFVPREASGPITHATYSC------------------DS 1032 (1134)
Q Consensus 982 ~l~fs~dg~~l~~~-----~d~~-----i~iwd~~~~~-~~~~~~~~~h~~~v~~~~~s~------------------dg 1032 (1134)
.++|+|||.+|++. ..+. .++|+-...+ ....+. .-......+.|+| -+
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp--~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyr 312 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLP--SPKKPALAVRFSPVYYELRPLSSEKFLFVLPYR 312 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecC--CCCcceEEEEeeeeEEEeccccccccccccccc
Confidence 78999999999871 2233 4566554332 222222 2244555555554 22
Q ss_pred CEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCCC
Q 001163 1033 QSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEG 1106 (1134)
Q Consensus 1033 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~~ 1106 (1134)
-.+|.++ .+.|.|||.++..+++...-- |-+.++.+ +|++ ||..|+..|.||...+-.+...|.
T Consensus 313 lvfaiAt-~~svyvydtq~~~P~~~v~ni------hy~~iTDi--aws~-dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 313 LVFAIAT-KNSVYVYDTQTLEPLAVVDNI------HYSAITDI--AWSD-DGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred eEEEEee-cceEEEeccccccceEEEeee------eeeeecce--eecC-CCcEEEEeccCCceEEEEEcchhc
Confidence 2344454 567999999999888766622 44556666 8888 799999999999888777765543
No 174
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=7.1e-16 Score=168.48 Aligned_cols=606 Identities=13% Similarity=0.133 Sum_probs=346.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecC----------CCceEEEEEeCCCe
Q 001163 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP----------NKQLSVVTCGEDRV 488 (1134)
Q Consensus 419 ~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~----------~~~~~l~s~s~d~~ 488 (1134)
..-.++.|+|.| ++|.|+.. .|.+-|..+-+.+. .+.-|...|+.+.|.|. ..+++|+++...|.
T Consensus 16 sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 346778899876 67777655 58888888766554 67889999999999873 24557889999999
Q ss_pred EEEEECCCCceeEEecCCCcCEEEEeccccCCc--cEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECc-CCCE
Q 001163 489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENI--QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA-DGAR 565 (1134)
Q Consensus 489 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 565 (1134)
|.+||...+..+..+..|..++..++|.+..+. .+|+.-....++.+|+.++++....+........++.+.| |.+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 999999999999999999999999998776543 4666667778999999999998888887776777788888 3344
Q ss_pred EEEEecCCCCCeEEEEEeC-CC------CeeEEEecCCCC----------------Cc--------eEEEEEcCCCCEEE
Q 001163 566 LFSCGTNKEGESYLVEWNE-SE------GAVKRTYHGLGK----------------RS--------VGVVQFDTTKNRFL 614 (1134)
Q Consensus 566 l~~~~~~~~~~~~i~~wd~-~~------~~~~~~~~~~~~----------------~~--------v~~~~~~~~~~~l~ 614 (1134)
+..-+. .+.+.+-+. .. |+..+.-..|.+ .+ ...++|+|.-+.++
T Consensus 171 ~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 171 FCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred EEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 433332 112333221 11 122221111111 00 01246788777677
Q ss_pred EEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCC--cEEEEEECCCcEEEEEccCCceeEEEeccCcccccccc
Q 001163 615 AAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG--ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVA 692 (1134)
Q Consensus 615 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 692 (1134)
.......+.++|++-..++..+....+ .+.-+.+-|++ ..|++...||.+.+|--......+++-..
T Consensus 247 fi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~--------- 315 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNA--------- 315 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccch---------
Confidence 777778899999999999988877633 45567777754 67999999999999976543222221100
Q ss_pred hhhhhcccccccccccccccccCcCCCCcccccccCCCC-CCccCcc-cccccccccccccceeeecccCCccceecccc
Q 001163 693 SAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSN-DSRNFTD-VKPKIADEAVEKSRIWKLTEITEPSQCRSLRL 770 (1134)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 770 (1134)
.++.+......-+.++..|-+ .+...|. ...++.-.+++.+.+|++.++........
T Consensus 316 ------------------~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s--- 374 (1062)
T KOG1912|consen 316 ------------------SLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRS--- 374 (1062)
T ss_pred ------------------hhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccc---
Confidence 011111111111111111100 1111222 33444556678899999885332221111
Q ss_pred CCccccccEEEEEEecCC-----ceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCC
Q 001163 771 PDNLTAMRVSRLIYTNSG-----LAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDA 845 (1134)
Q Consensus 771 ~~~~~~~~i~~l~~spdg-----~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~ 845 (1134)
+....+..+.|..+. ..++.-+.|| .. .+|......-+ ...
T Consensus 375 ---~~iel~~pf~f~~~~~~v~k~~l~~LS~dg----------------~h-----------~sGs~~~~~~p----~p~ 420 (1062)
T KOG1912|consen 375 ---SSIELVLPFDFNLSTKLVGKTSLISLSDDG----------------SH-----------SSGSTCVRMRP----MPE 420 (1062)
T ss_pred ---ccccccccccccCceeehhhccccchhhcC----------------CC-----------CCCceeeeccc----Ccc
Confidence 011112222222211 1122223332 00 00100000000 000
Q ss_pred eeEEEEcCCC-------CeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEe----------CCC
Q 001163 846 VPCFALSKND-------SYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGM----------EDS 907 (1134)
Q Consensus 846 v~~v~~s~dg-------~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~----------~dg 907 (1134)
..-..-.|.| .++|.|. .|+|.++|+.++...+.+..|...|.++.|.. ... |++.+ .-+
T Consensus 421 ~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~ss-lvSfsys~~n~~sg~vrN 498 (1062)
T KOG1912|consen 421 LTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-NSS-LVSFSYSHVNSASGGVRN 498 (1062)
T ss_pred cceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc-cee-EEEeeeccccccccceee
Confidence 0001111111 3677787 79999999999999999999999999999985 444 44332 224
Q ss_pred cEEEEEcccceEE--EeccC-ccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEE
Q 001163 908 SIQIYNVRVDEVK--TKLKG-HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQ 984 (1134)
Q Consensus 908 ~i~iwd~~~~~~~--~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 984 (1134)
.+.|-|+.+|... +-+++ ...+|+.+..|.-|++|+....|.-+.+||+++-..........+ .++.+.
T Consensus 499 ~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P--------~it~le 570 (1062)
T KOG1912|consen 499 DLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALP--------LITVLE 570 (1062)
T ss_pred eEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCC--------cEEEEe
Confidence 6788899988533 32333 567899999999999999999999999999977443222111111 266777
Q ss_pred Ec-CCCCE---------------EEEEeeceEEEEeCC-------Cccc-ceeeccCCCccCEEEEEEccCCCEEEEEec
Q 001163 985 FH-LDQTH---------------LLAVHETQIAIYEAP-------KLEC-LKQFVPREASGPITHATYSCDSQSIYVAFE 1040 (1134)
Q Consensus 985 fs-~dg~~---------------l~~~~d~~i~iwd~~-------~~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 1040 (1134)
|+ |.-.. +++......+++.+. .+.. ...+. .....+-.|+| .+..|+.|..
T Consensus 571 Wsl~~~~si~qk~ls~q~sms~n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~e--sfafal~~mAw--k~d~lv~GD~ 646 (1062)
T KOG1912|consen 571 WSLPKHPSIKQKELSKQSSMSENLVVLDSVESRIYHITLSALVVSDGSQVNTAWE--SFAFALCAMAW--KDDILVVGDV 646 (1062)
T ss_pred ecccCCCCcccccchhhhhhhhceeeeccccchheehhhhhhhhccccchhhHHH--HHHHHHHhhhc--cCCeeEeecc
Confidence 76 32111 111111233333322 1111 00010 01122233455 4668999999
Q ss_pred CCcEEEeecCCCcceeecCCC---------cccCCCCCCCceeEE--EEecCCCCCEEEE-EecCCcEEEEeCCCCCCCc
Q 001163 1041 EGSVGVLTASTLRLRCRINPT---------AYLPTNPSLRVYPLV--IAGNPTDPNQFAL-GLTDGGVYIIEPLEAEGRW 1108 (1134)
Q Consensus 1041 Dg~i~vwd~~~~~~~~~~~~~---------~~~~~~h~~~v~~~~--~~~~p~~~~~l~s-~~~Dg~v~vW~~~~~~~~~ 1108 (1134)
+|.+.+||+....-......+ ..+|..|..-|..+. -.|......++.+ ++.|++.++-|+...+.+-
T Consensus 647 ~GNl~~WDlg~R~SRg~~d~p~~ra~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~ 726 (1062)
T KOG1912|consen 647 EGNLVVWDLGRRQSRGVRDSPDPRAHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSP 726 (1062)
T ss_pred cCceeEEecccccccCccCCCCchhhheecccCCCCceEEEEecCcceecccccceeeeeeccCCcceEEEEEEecccCc
Confidence 999999996543221111100 122322422222220 0111112233333 5889999999988766654
Q ss_pred cCCCC
Q 001163 1109 GTSPP 1113 (1134)
Q Consensus 1109 ~~~~~ 1113 (1134)
.+-|+
T Consensus 727 ~~l~~ 731 (1062)
T KOG1912|consen 727 LVLPN 731 (1062)
T ss_pred eecCC
Confidence 44444
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=2.2e-17 Score=166.85 Aligned_cols=245 Identities=14% Similarity=0.181 Sum_probs=185.0
Q ss_pred CCCEEEEE---eCCCEEEEEEc-cCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC-------
Q 001163 429 DGTLFGVA---YSKHIVHLYTY-HGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG------- 497 (1134)
Q Consensus 429 d~~~las~---s~dg~v~iwd~-~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~------- 497 (1134)
+.++||.. +..|...+--+ ++|+.-.....+.||+++|..++|+|-+.+ .|+|||.|.+|.||++..+
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~vW~IPe~~l~~~lt 121 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVMVWQIPENGLTRDLT 121 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEEEEECCCcccccCcc
Confidence 45666653 22233333222 234333333357799999999999998776 7999999999999998765
Q ss_pred ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCe
Q 001163 498 TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGES 577 (1134)
Q Consensus 498 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 577 (1134)
+.+..+.||...|.-+.|+|... +.|++++.|.+|.+||+.+++....+. |...|.++.|+.||.++++.+.|+
T Consensus 122 epvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDK---- 195 (472)
T KOG0303|consen 122 EPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDK---- 195 (472)
T ss_pred cceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccc----
Confidence 34667889999999999999776 789999999999999999999888887 888999999999999999998755
Q ss_pred EEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe----CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCC
Q 001163 578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG----DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 653 (1134)
Q Consensus 578 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 653 (1134)
.|++||.++++.+..-.+|.+.....+.|-.++. +++.+ .+..+-+||..+-+.-..+..-.....|.---|.+|
T Consensus 196 kvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~d 274 (472)
T KOG0303|consen 196 KVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPD 274 (472)
T ss_pred eeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCC
Confidence 5999999999999988888776666777888888 55544 578899999876543222221122334545556777
Q ss_pred CcEEEE-EECCCcEEEEEccCCceeEEEe
Q 001163 654 GILLAV-STNDNGIKILANADGIRLLRTV 681 (1134)
Q Consensus 654 ~~~l~~-~~~dg~i~iw~~~~~~~~~~~~ 681 (1134)
..+++. |-.|+.||-|.+.+....+.-+
T Consensus 275 t~ivYl~GKGD~~IRYyEit~d~P~~hyl 303 (472)
T KOG0303|consen 275 TSIVYLCGKGDSSIRYFEITNEPPFVHYL 303 (472)
T ss_pred CCEEEEEecCCcceEEEEecCCCceeEEe
Confidence 776654 5569999999998875444433
No 176
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=1.9e-16 Score=165.78 Aligned_cols=494 Identities=12% Similarity=0.125 Sum_probs=294.1
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEE------ecCCCceEEEEEeCCCeE
Q 001163 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF------SYPNKQLSVVTCGEDRVI 489 (1134)
Q Consensus 416 ~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~------s~~~~~~~l~s~s~d~~i 489 (1134)
.|...|.|+.|+.+...+.+++++..+.-||+.+... .. +.-...-|....+ -..+..-.++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~---~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EV---AKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hh---hhCCcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 5777888999999888888776666666666654332 11 1101111111000 001111168888999999
Q ss_pred EEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEE
Q 001163 490 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC 569 (1134)
Q Consensus 490 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 569 (1134)
.|.+ +.++.-..+..|.+.+.+-.|++++ .-|+++++||.|++|.-. +-.+..+......|+|++|.|+.+.++.+
T Consensus 88 ~il~-k~~rVE~sv~AH~~A~~~gRW~~dG--tgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 88 VILN-KSARVERSISAHAAAISSGRWSPDG--AGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred EEec-ccchhhhhhhhhhhhhhhcccCCCC--ceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 9998 7888888899999999999996655 669999999999999743 33344444556689999999999888877
Q ss_pred ecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEE
Q 001163 570 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR 649 (1134)
Q Consensus 570 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 649 (1134)
..+ .+.+-.+.....+-.++.|.+ -|.++.|++..+.+++||+|-..+|||... ..+..-..| ..+|++++
T Consensus 164 ~g~-----h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~--ey~ITSva 234 (737)
T KOG1524|consen 164 QGG-----HISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAE--EYAITSVA 234 (737)
T ss_pred cCC-----eEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeecccC-cccccCChh--ccceeeee
Confidence 532 377777777777778888887 899999999999999999999999999754 444444444 56899999
Q ss_pred EcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCC
Q 001163 650 FNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM 729 (1134)
Q Consensus 650 ~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 729 (1134)
|+|+ ..++.++.. ++|+ +.
T Consensus 235 ~npd-~~~~v~S~n-t~R~---~~-------------------------------------------------------- 253 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-TARF---SS-------------------------------------------------------- 253 (737)
T ss_pred eccc-cceeeeeee-eeee---cC--------------------------------------------------------
Confidence 9999 555555532 3331 00
Q ss_pred CCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEee-ecCCC
Q 001163 730 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLW-KWPRN 808 (1134)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw-~~~~~ 808 (1134)
...+.|..++||+||..++.|+..|.+.+= -++..
T Consensus 254 --------------------------------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~ 289 (737)
T KOG1524|consen 254 --------------------------------------------PRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQ 289 (737)
T ss_pred --------------------------------------------CCccceEEEEEcCCCceeeccccCceEEEeeeehhh
Confidence 134678899999999999999998877652 22221
Q ss_pred CCCcccccc--cCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCC
Q 001163 809 ERNSTGKAT--TNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPA 886 (1134)
Q Consensus 809 ~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~ 886 (1134)
-..-+.+.+ ....+.+-|+.++..-..+ ....|...+ -.-.+|+++....+++|.-........+.+....
T Consensus 290 l~~~n~~~t~~~r~~I~vrdV~~~v~d~LE-----~p~rv~k~s--L~Y~hLvvaTs~qvyiys~knwntpiiidgre~t 362 (737)
T KOG1524|consen 290 LVSGNLKATSKSRKSITVRDVATGVQDILE-----FPQRVVKFS--LGYGHLVVATSLQVYIYSEKNWNTPIIIDGREDT 362 (737)
T ss_pred hhhccceeEeeccceEEeehhhhhHHHHhh-----Cccceeeee--eceeEEEEEeccEEEEEecCCccCcEEEeccccc
Confidence 111111111 1123444566655543322 233444444 3445777777888999987776666666555444
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEecc--Ccc-CceEEEEEeeCCCEEEE--EeCCCcEEEEEC-CCCc
Q 001163 887 ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK--GHQ-KRITGLAFSNTLNVLVS--SGADSQLCVWST-DGWE 960 (1134)
Q Consensus 887 v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~--~h~-~~V~~l~~s~d~~~l~s--~s~Dg~i~iwd~-~~~~ 960 (1134)
+.-+.-+. ..+++ ...-+|.+|... |+.....+ +.. ...+.=..|-....|+. ..+...+.+||. .+++
T Consensus 363 r~lieq~e--k~fli--~dgsSi~lytye-gR~~~np~~Pg~~~dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk 437 (737)
T KOG1524|consen 363 RNLIEQGE--KYFLI--LDGSSIWLYTYE-GRLHLNPRYPGSQIDLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGK 437 (737)
T ss_pred hhHhhhhh--hheEE--ecCcEEEEEEec-CceecCCCCCCcccccccceeeecccceEEeecCCCCeeEEeccCCCCCc
Confidence 43333322 12222 223356666644 33322221 111 11111112222233443 233345778887 5655
Q ss_pred cccc-eeeeecCCCCCCCCCceEEEEc----CCCCEEEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCE
Q 001163 961 KQAS-KFLTIPNGRTASALADTRVQFH----LDQTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQS 1034 (1134)
Q Consensus 961 ~~~~-~~~~~~~~~~~~~~~v~~l~fs----~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~ 1034 (1134)
.+.- ..+.. ...+..++.. ++.+.++. -.++.+.|=.+++......+. .-..-|..++|+ |-.-
T Consensus 438 ~qgDgk~L~h-------k~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~--KiGTmVhtLawn-dttN 507 (737)
T KOG1524|consen 438 RQGDGKSLRH-------KQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIY--KIGTMVHTLAWN-DTTN 507 (737)
T ss_pred ccCCccccch-------hhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhh--hhhhhhhhhhhc-cccc
Confidence 3321 10110 0112222221 22222222 344555555554433222222 124567788887 4455
Q ss_pred EEEEecCCcEEEeecCCCc
Q 001163 1035 IYVAFEEGSVGVLTASTLR 1053 (1134)
Q Consensus 1035 l~s~s~Dg~i~vwd~~~~~ 1053 (1134)
+++|-.|+.+.||-+.+.-
T Consensus 508 iLcglqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 508 ILCGLQDTCFSVWYYPNEV 526 (737)
T ss_pred eeeeeccceEEEEEcCCcc
Confidence 6778899999999987643
No 177
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=9.9e-17 Score=168.35 Aligned_cols=241 Identities=15% Similarity=0.194 Sum_probs=163.2
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 492 (1134)
.+.||++.|+|++|+.||.+|++||.|-.+.|||.-..+.+..+ -.||.+.|.++.|-|......++||..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 37899999999999999999999999999999999876655432 3589999999999997666589999999999999
Q ss_pred ECCC----------CceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCce-ee---------ecCCCC
Q 001163 493 DAVT----------GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR-VD---------YDAPGH 552 (1134)
Q Consensus 493 d~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~---------~~~~~~ 552 (1134)
|+.. .+..+.+..|...|..|+..+... +.+.++++||+|+-+|++....- .. +...--
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9884 234456677999998888755433 78999999999999999863211 11 111112
Q ss_pred CeeEEEECcCCCE-EEEEecCCCCCeEEEEEeCCCCeeEEEecCCCC------CceEEE-EEcCCCCEEEEEeCCCeEEE
Q 001163 553 SSTMMAYSADGAR-LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK------RSVGVV-QFDTTKNRFLAAGDEFMIKF 624 (1134)
Q Consensus 553 ~v~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~-~~~~~~~~l~~~~~dg~i~i 624 (1134)
...++.++|...+ |++|+. +...++||.+... ..+..... ....++ -|+|.+- ...+|.+
T Consensus 202 elk~ltisp~rp~~laVGgs----dpfarLYD~Rr~l--ks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~gn~-- 269 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGS----DPFARLYDRRRVL--KSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQGNL-- 269 (758)
T ss_pred eeeeeeecCCCCceEEecCC----Cchhhhhhhhhhc--cCCCCCccccCCCCcccchhheecCccc----cCccccc--
Confidence 5678899997654 555543 4578999963221 11111100 011111 1223221 1111111
Q ss_pred EEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEec
Q 001163 625 WDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVE 682 (1134)
Q Consensus 625 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 682 (1134)
... ...++-++|+|+|.-|++.-....|+++++..++.....+.
T Consensus 270 --------~~~------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~~ 313 (758)
T KOG1310|consen 270 --------DRY------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYFL 313 (758)
T ss_pred --------ccc------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeecC
Confidence 000 11246789999997777766667999999988855554443
No 178
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=9.8e-17 Score=161.20 Aligned_cols=297 Identities=11% Similarity=0.142 Sum_probs=211.8
Q ss_pred EeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCC
Q 001163 352 TLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT 431 (1134)
Q Consensus 352 ~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~ 431 (1134)
.++|.+.|+++.||.+++ +||+|+.|..+++|+++..-.... .++++. .-..|...|.|++|....+
T Consensus 52 ~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~-----------~KPI~~-~~~~H~SNIF~L~F~~~N~ 118 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKT-----------PKPIGV-MEHPHRSNIFSLEFDLENR 118 (609)
T ss_pred hhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcC-----------CCCcee-ccCccccceEEEEEccCCe
Confidence 356999999999999988 569999999999999864322111 011111 1245778999999999999
Q ss_pred EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc-e--eEEecCCCc
Q 001163 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-K--QYIFEGHES 508 (1134)
Q Consensus 432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~-~--~~~~~~h~~ 508 (1134)
+|.+|+.+++|...|+++.+.+... .-....+.|..+.-+|-.+ .|++.+.++.|.+||.+... . +..+.....
T Consensus 119 ~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~ 195 (609)
T KOG4227|consen 119 FLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK 195 (609)
T ss_pred eEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCCCc
Confidence 9999999999999999998766521 1122334899999999977 79999999999999987654 2 222333445
Q ss_pred CEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee-------cCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEE
Q 001163 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-------DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581 (1134)
Q Consensus 509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 581 (1134)
....+.|+|... .+|++.+..+-+.+||.+........ ......-.+..|+|+|..+++.-... .-.+
T Consensus 196 ~F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~----~P~~ 270 (609)
T KOG4227|consen 196 NFYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGK----CPLY 270 (609)
T ss_pred cceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccC----CCEE
Confidence 566777877654 68889999999999998765433221 11112235678999999988764322 3557
Q ss_pred EeCCCCe-eEEEecCCCC-----CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-----------------------ce
Q 001163 582 WNESEGA-VKRTYHGLGK-----RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV-----------------------NL 632 (1134)
Q Consensus 582 wd~~~~~-~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----------------------~~ 632 (1134)
||+-+.+ .+..+..... ..+.+++|..|. .+++|+.+-.|++|.+... +.
T Consensus 271 ~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~ 349 (609)
T KOG4227|consen 271 FDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKE 349 (609)
T ss_pred eeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecce
Confidence 7877644 3333432221 135567777654 5899999999999987421 12
Q ss_pred eEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEcc
Q 001163 633 LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (1134)
Q Consensus 633 ~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 672 (1134)
+..+. +|...++.+.|+|...+|++.+-.+.++||.-.
T Consensus 350 ~~VLr--GHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 350 LTVLR--GHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eEEEe--cccccccceeecCCcceEeccchhhheeccccc
Confidence 23444 447788999999999999999999999999754
No 179
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=6.1e-18 Score=175.47 Aligned_cols=297 Identities=19% Similarity=0.264 Sum_probs=230.4
Q ss_pred EEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163 350 VMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 428 (1134)
Q Consensus 350 ~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 428 (1134)
...|. |.+.|..|.|...|. ++++|+.|..|.+||+..++.... +..||...|..-.|-|
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP 195 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIP 195 (559)
T ss_pred hhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccC
Confidence 34454 999999999999999 679999999999999998876543 3578999999999998
Q ss_pred --CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe---
Q 001163 429 --DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF--- 503 (1134)
Q Consensus 429 --d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--- 503 (1134)
+..-+++++.||.|++=.+...........+..|.++|.-++.-|+... -|.|++.|+.+.-.|++++.....+
T Consensus 196 ~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr 274 (559)
T KOG1334|consen 196 FSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCR 274 (559)
T ss_pred CCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeee
Confidence 5678999999999999887655545445568889999999999999887 7999999999999999887654333
Q ss_pred cCCCc---CEEEEeccccCCccEEEEecCCCcEEEEecCCCCce------eeec------CCCCCeeEEEECcCCCEEEE
Q 001163 504 EGHES---PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR------VDYD------APGHSSTMMAYSADGARLFS 568 (1134)
Q Consensus 504 ~~h~~---~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~------~~~~------~~~~~v~~~~~s~~~~~l~~ 568 (1134)
..+.. ....++.+|... ..+++++.|..+++||.+..... ..+. .....|++++|+.++.-|++
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa 353 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA 353 (559)
T ss_pred ccCCccceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee
Confidence 22333 466777776543 58999999999999997643322 1111 12237899999977766665
Q ss_pred EecCCCCCeEEEEEeCCC--C----------eeEE-EecCCCCC-ceEEE-EEcCCCCEEEEEeCCCeEEEEEcCCCcee
Q 001163 569 CGTNKEGESYLVEWNESE--G----------AVKR-TYHGLGKR-SVGVV-QFDTTKNRFLAAGDEFMIKFWDMDNVNLL 633 (1134)
Q Consensus 569 ~~~~~~~~~~i~~wd~~~--~----------~~~~-~~~~~~~~-~v~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 633 (1134)
...+. .|+++.... | ..+. .|++|.+. .|..+ .|.|...++++|++-|.|.||+-.+++.+
T Consensus 354 SYnDe----~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 354 SYNDE----DIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred eeccc----ceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence 55433 388875432 2 2233 37888653 34445 46788899999999999999999999999
Q ss_pred EEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163 634 ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (1134)
Q Consensus 634 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 673 (1134)
..+.+..+ .|+|+.-+|--..||+.+-|..|+||...+
T Consensus 430 ~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 430 RFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred HHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCc
Confidence 99987755 899999999999999999999999998643
No 180
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=7.8e-16 Score=145.50 Aligned_cols=280 Identities=17% Similarity=0.224 Sum_probs=189.1
Q ss_pred eeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeC
Q 001163 359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS 438 (1134)
Q Consensus 359 V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~ 438 (1134)
|.+-++||.+++ ++.|..+|.|.+..+..-..-..+ .....+.. ...+|.++|+.++|. ..+|++|+.
T Consensus 13 vf~qa~sp~~~~-l~agn~~G~iav~sl~sl~s~sa~-------~~gk~~iv--~eqahdgpiy~~~f~--d~~Lls~gd 80 (325)
T KOG0649|consen 13 VFAQAISPSKQY-LFAGNLFGDIAVLSLKSLDSGSAE-------PPGKLKIV--PEQAHDGPIYYLAFH--DDFLLSGGD 80 (325)
T ss_pred HHHHhhCCcceE-EEEecCCCeEEEEEehhhhccccC-------CCCCccee--eccccCCCeeeeeee--hhheeeccC
Confidence 445678899985 689999999999998642211100 00000011 147899999999998 557777754
Q ss_pred CCEEEEEEccCCcee---eeee--eeecCC-----CCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCc
Q 001163 439 KHIVHLYTYHGGDEL---RNHL--EIEAHV-----GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES 508 (1134)
Q Consensus 439 dg~v~iwd~~~~~~~---~~~~--~l~~h~-----~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 508 (1134)
|.|+-|..+....- +... ....|. -.|+++-..|..+ -+++++.|+.++-||+++|+..++++||++
T Consensus 81 -G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHtD 157 (325)
T KOG0649|consen 81 -GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHTD 157 (325)
T ss_pred -ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCcc
Confidence 99999987643321 1000 012233 2488999998777 477777999999999999999999999999
Q ss_pred CEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCC----------CeeEEEECcCCCEEEEEecCCCCCeE
Q 001163 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH----------SSTMMAYSADGARLFSCGTNKEGESY 578 (1134)
Q Consensus 509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----------~v~~~~~s~~~~~l~~~~~~~~~~~~ 578 (1134)
.|.++.-.... ..+++|++||++|+||.++.+....+....+ .| .+..-+..++++++.. .
T Consensus 158 YvH~vv~R~~~--~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp-----~ 228 (325)
T KOG0649|consen 158 YVHSVVGRNAN--GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGP-----K 228 (325)
T ss_pred eeeeeeecccC--cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee--EEEeccCceEEecCCC-----c
Confidence 99999853322 5799999999999999999887776543222 23 3444566788887643 4
Q ss_pred EEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCC-cEE
Q 001163 579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG-ILL 657 (1134)
Q Consensus 579 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~-~~l 657 (1134)
+.+|.++..++...|.-.. .+..+.|. ...++++++.+.|.-|.+. |.+...++.. .....+..|+... +++
T Consensus 229 lslwhLrsse~t~vfpipa--~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~--s~~c~s~s~~~~p~k~~ 301 (325)
T KOG0649|consen 229 LSLWHLRSSESTCVFPIPA--RVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVE--STACYSASWQTSPIKFI 301 (325)
T ss_pred eeEEeccCCCceEEEeccc--ceeEeeee--cceEEEeccccceeeeeec-cEEEEeccCC--ccceeeecccCCceEEE
Confidence 9999999998888776543 56667775 4578888888899999874 4443333332 2234455554433 344
Q ss_pred EEEECCCcEEEE
Q 001163 658 AVSTNDNGIKIL 669 (1134)
Q Consensus 658 ~~~~~dg~i~iw 669 (1134)
-.++....+.|+
T Consensus 302 s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 302 SIAGFSNKLHIL 313 (325)
T ss_pred Eecccceeeeee
Confidence 445555555554
No 181
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.75 E-value=9.7e-16 Score=160.58 Aligned_cols=210 Identities=15% Similarity=0.190 Sum_probs=163.1
Q ss_pred CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcC
Q 001163 430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP 509 (1134)
Q Consensus 430 ~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~ 509 (1134)
...++.++.||.+.|-+-.. +.- .....|.+.|.+-.|+|||. -|+|++.||.|++|. ++|-...++.....+
T Consensus 75 ~d~~~i~s~DGkf~il~k~~-rVE---~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~ 147 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSA-RVE---RSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEES 147 (737)
T ss_pred cceEEEEcCCceEEEecccc-hhh---hhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCce
Confidence 35788889999988887443 322 25789999999999999999 799999999999999 788777777778889
Q ss_pred EEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCee
Q 001163 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV 589 (1134)
Q Consensus 510 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 589 (1134)
|.|++|.|+.+ ..+++.+ +.+.+=.+...........|.+-|.++.|++....+++++. +...++||.. |..
T Consensus 148 v~c~~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~ 219 (737)
T KOG1524|consen 148 IRCARWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GAN 219 (737)
T ss_pred eEEEEECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-Ccc
Confidence 99999988765 4555554 55666666666777788899999999999999999999986 4569999965 555
Q ss_pred EEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEE
Q 001163 590 KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKIL 669 (1134)
Q Consensus 590 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw 669 (1134)
+..-..|.- +|++++|.|+ ..++.++. .+++ +.. ...+.|..++|++||..+++|+..|.+.+=
T Consensus 220 Lf~S~~~ey-~ITSva~npd-~~~~v~S~-nt~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 220 LFTSAAEEY-AITSVAFNPE-KDYLLWSY-NTAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred cccCChhcc-ceeeeeeccc-cceeeeee-eeee------------ecC-CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 555555554 8999999999 55555553 3344 111 225578899999999999999999987653
Q ss_pred E
Q 001163 670 A 670 (1134)
Q Consensus 670 ~ 670 (1134)
.
T Consensus 284 ~ 284 (737)
T KOG1524|consen 284 Y 284 (737)
T ss_pred e
Confidence 3
No 182
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=9e-17 Score=159.87 Aligned_cols=275 Identities=14% Similarity=0.155 Sum_probs=194.6
Q ss_pred EEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC--CCCEEEEEeCCCEEEEEEcc
Q 001163 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTLFGVAYSKHIVHLYTYH 448 (1134)
Q Consensus 371 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~~las~s~dg~v~iwd~~ 448 (1134)
.+|++...|.|+|||..+++.+.. +.+|...++.++|.. ....+.+|+.||+|++||++
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 678999999999999999887764 678999999999988 56789999999999999999
Q ss_pred CCceeeeeeeeecCC-CCEEEEEEecCCCceEEEEEe----CCCeEEEEECCCCce-eEEe-cCCCcCEEEEeccccCCc
Q 001163 449 GGDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCG----EDRVIKVWDAVTGTK-QYIF-EGHESPVYSICPHHKENI 521 (1134)
Q Consensus 449 ~~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~l~s~s----~d~~i~iwd~~~~~~-~~~~-~~h~~~v~~~~~~~~~~~ 521 (1134)
+....... ...+|. .+..|++..-.++ .+++|. .|-.|.+||++..+. +..+ ..|...|++++|+|+..
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p- 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP- 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC-
Confidence 87765433 355666 5677777665555 566664 366899999998776 5544 56999999999998765
Q ss_pred cEEEEecCCCcEEEEecCCCCcee---eecCCCCCeeEEEECcCC-CEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCC
Q 001163 522 QFIFSTATDGKIKAWLYDNLGSRV---DYDAPGHSSTMMAYSADG-ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG 597 (1134)
Q Consensus 522 ~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 597 (1134)
++|++||.||.|.++|+......- ...-+...|..+.|..++ +.+.+.+... ...+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~E----tf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHME----TFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccC----ceeEEEccCCChhhcccCcc
Confidence 799999999999999987653322 223345578999998877 3455554432 48999999887655443321
Q ss_pred CC--------ce-EEE-EEcC-CCCEEEEEe-CCCeEEEEEcC---CCc---eeEEEecCCCCCCcceEEEcCCCcEEEE
Q 001163 598 KR--------SV-GVV-QFDT-TKNRFLAAG-DEFMIKFWDMD---NVN---LLASIDADGGLQASPCIRFNKEGILLAV 659 (1134)
Q Consensus 598 ~~--------~v-~~~-~~~~-~~~~l~~~~-~dg~i~iwd~~---~~~---~~~~~~~~~~~~~v~~v~~sp~~~~l~~ 659 (1134)
-. .+ +-+ +.+| +...++.++ .-+...++-+. ++. .+..+.+ ++...|.++.|...+.++.+
T Consensus 255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~T 333 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYT 333 (376)
T ss_pred chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeec
Confidence 10 00 001 1223 334444444 35555555433 333 3333333 35667889999999999999
Q ss_pred EECCCcEEEEEccC
Q 001163 660 STNDNGIKILANAD 673 (1134)
Q Consensus 660 ~~~dg~i~iw~~~~ 673 (1134)
|+.||.+.+|...+
T Consensus 334 GGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 334 GGEDGLLQAWKVED 347 (376)
T ss_pred cCCCceEEEEecCC
Confidence 99999999998643
No 183
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.3e-17 Score=174.81 Aligned_cols=250 Identities=14% Similarity=0.208 Sum_probs=188.9
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEcc-----CCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCe
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYH-----GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV 488 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~-----~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~ 488 (1134)
+..|.+.|..++|.|-...|++++.||++++|+++ ....+.+..++.+|.++|.|++..+++. .+++|+.||+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg~ 367 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDGT 367 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCce
Confidence 56799999999999999999999999999999993 2334667778999999999999999999 7999999999
Q ss_pred EEEEECCCC----------ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC--CCeeE
Q 001163 489 IKVWDAVTG----------TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG--HSSTM 556 (1134)
Q Consensus 489 i~iwd~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~v~~ 556 (1134)
|+.|++... .....+.||.+.|+.++++... ..|++++.||+++.|+...... ..+.... +.-.+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 999965411 2335678999999999998777 5699999999999998765444 2222221 12234
Q ss_pred EEECcCC-CEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCC------CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001163 557 MAYSADG-ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG------KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 629 (1134)
Q Consensus 557 ~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 629 (1134)
+.+.... ...++... ...-.+++...+..+..+.... ...+..+...|.+.+.+++.+|+.|+++|..+
T Consensus 445 vd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred EeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 4443222 11222111 1112234444444444433221 12456688899999999999999999999999
Q ss_pred CceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 630 VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 630 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
++++.....| ...++++++.|+|.+|++++.|+.+++|.+...
T Consensus 521 ~~~l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 521 GKILHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cccchheeec--cceecceeecCCCceEEeecCCceeehhhccch
Confidence 9999988866 778999999999999999999999999998654
No 184
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=6.3e-16 Score=150.12 Aligned_cols=291 Identities=15% Similarity=0.275 Sum_probs=209.5
Q ss_pred eeEEEeecCCCeeEEEEc--CCCCeEEEEEeCC----CcEEEEecC--CccceeeeceeeeeccccCccccccccccCCC
Q 001163 348 TVVMTLNQGSAVKSMDFH--PVQQILLVVGTNM----GDVMLWEVG--SRERIAVKSFKVWELGACSMPLQASLSSDYTA 419 (1134)
Q Consensus 348 ~~~~~~~h~~~V~~v~fs--p~g~~lla~gs~d----g~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 419 (1134)
+.+..+...-.+.++.|| |+.+..+|.|+.. ..|.|-.+. +++.+.. --..|.-
T Consensus 36 ~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~------------------a~fd~~Y 97 (364)
T KOG0290|consen 36 KEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED------------------ANFDHPY 97 (364)
T ss_pred ceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc------------------CCCCCCC
Confidence 335667777889999999 5666678888742 445554433 3333321 1246999
Q ss_pred CEEEEEEcCCC-----CEEEEEeCCCEEEEEEccCCc-eeeeeeee-----ecCCCCEEEEEEecCCCceEEEEEeCCCe
Q 001163 420 SVNRVMWSPDG-----TLFGVAYSKHIVHLYTYHGGD-ELRNHLEI-----EAHVGSVNDLAFSYPNKQLSVVTCGEDRV 488 (1134)
Q Consensus 420 ~V~~l~~spd~-----~~las~s~dg~v~iwd~~~~~-~~~~~~~l-----~~h~~~V~~v~~s~~~~~~~l~s~s~d~~ 488 (1134)
+++.+.|.|+. ++||+.+. .+++|.+...+ .+.....+ ..+.+++++..|+.-..+ ++.++|-|-+
T Consensus 98 P~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTT 174 (364)
T KOG0290|consen 98 PVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTT 174 (364)
T ss_pred CccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCe
Confidence 99999999976 36666543 59999987421 12211122 246678999999986665 7999999999
Q ss_pred EEEEECCCCce---eEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceee-ecCC--CCCeeEEEECcC
Q 001163 489 IKVWDAVTGTK---QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-YDAP--GHSSTMMAYSAD 562 (1134)
Q Consensus 489 i~iwd~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~--~~~v~~~~~s~~ 562 (1134)
..|||+++|.. ...+-+|..+|..++|.. +..+.+++.+.||.||+||++..+.-.. ++.. ..+...++|++.
T Consensus 175 CTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkq 253 (364)
T KOG0290|consen 175 CTIWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQ 253 (364)
T ss_pred EEEEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcC
Confidence 99999998733 456778999999999976 4447999999999999999997665433 3333 346778888874
Q ss_pred -CCEEEEEecCCCCCeEEEEEeCCCC-eeEEEecCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCce------e
Q 001163 563 -GARLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNL------L 633 (1134)
Q Consensus 563 -~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~------~ 633 (1134)
-+++++...+. ..|.+.|++.. .++..+.+|.. .|+.++|.|.. ..++++|+|..+.+||+...-. +
T Consensus 254 DpnymATf~~dS---~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPi 329 (364)
T KOG0290|consen 254 DPNYMATFAMDS---NKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPI 329 (364)
T ss_pred CchHHhhhhcCC---ceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCch
Confidence 46777776543 35899999875 67788899987 99999999976 6888999999999999975322 2
Q ss_pred EEEecCCCCCCcceEEEcC-CCcEEEEEECCCcEEE
Q 001163 634 ASIDADGGLQASPCIRFNK-EGILLAVSTNDNGIKI 668 (1134)
Q Consensus 634 ~~~~~~~~~~~v~~v~~sp-~~~~l~~~~~dg~i~i 668 (1134)
..+. ....|+.+.|++ .+.+++.+... .+.+
T Consensus 330 lay~---a~~EVNqi~Ws~~~~Dwiai~~~k-klei 361 (364)
T KOG0290|consen 330 LAYT---AGGEVNQIQWSSSQPDWIAICFGK-KLEI 361 (364)
T ss_pred hhhh---ccceeeeeeecccCCCEEEEEecC-eeeE
Confidence 2222 245799999997 56788776543 4433
No 185
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1e-16 Score=159.52 Aligned_cols=293 Identities=13% Similarity=0.155 Sum_probs=202.0
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecC--CC-CCee
Q 001163 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA--PG-HSST 555 (1134)
Q Consensus 479 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~-~~v~ 555 (1134)
.++++-..|+|+++|..+++.+..|+++...++.+.|........+.+++.||+|++||++.......+.. +. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 68888889999999999999999999999999999987754557899999999999999998765544333 22 3566
Q ss_pred EEEECcCCCEEEEEecCCCCCeEEEEEeCCCCee-EEEecCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCc--
Q 001163 556 MMAYSADGARLFSCGTNKEGESYLVEWNESEGAV-KRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVN-- 631 (1134)
Q Consensus 556 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-- 631 (1134)
+++..-+++.++++..--..+..+.+||.+..+. ++.+...+...|+.++|+|.. +.|++|+.||.|.+||+....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 6766667788888765555577899999998766 666654444499999999976 788999999999999987543
Q ss_pred --eeEEEecCCCCCCcceEEEcCCC-cEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccccccccccc
Q 001163 632 --LLASIDADGGLQASPCIRFNKEG-ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSA 708 (1134)
Q Consensus 632 --~~~~~~~~~~~~~v~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1134)
++.++. +...|.++.|..++ +.|.+-+..++..+|+++.+.... .+..........
T Consensus 202 DaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~-~~~~~~~~~~d~----------------- 260 (376)
T KOG1188|consen 202 DALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET-WLENPDVSADDL----------------- 260 (376)
T ss_pred hhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh-cccCccchhhhH-----------------
Confidence 223332 24468899999877 568888999999999999884221 111110000000
Q ss_pred ccccccCcCCCCcccccccCCCCCCccCccccccccc-ccccccceeeecccCCccceeccccCCccccccEEEEEEecC
Q 001163 709 NANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIAD-EAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNS 787 (1134)
Q Consensus 709 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 787 (1134)
......... -+.....+....+.+ ..-+...++-+.................+|..-|+++.|...
T Consensus 261 ---------r~~~~~dY~----I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~ 327 (376)
T KOG1188|consen 261 ---------RKEDNCDYV----INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVK 327 (376)
T ss_pred ---------Hhhhhhhhe----eecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcc
Confidence 000000000 000111122333332 224566666665433333334444444557888899999999
Q ss_pred CceeeeeccCCeEEeeec
Q 001163 788 GLAILALASNAVHKLWKW 805 (1134)
Q Consensus 788 g~~l~~~~~dg~i~vw~~ 805 (1134)
+..+.+|+.||.+.+|..
T Consensus 328 ~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 328 NDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cceeeccCCCceEEEEec
Confidence 999999999999999974
No 186
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=5.9e-16 Score=152.68 Aligned_cols=381 Identities=11% Similarity=0.132 Sum_probs=236.5
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEE-eCC
Q 001163 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA-YSK 439 (1134)
Q Consensus 361 ~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~-s~d 439 (1134)
-+.|||+|+|+ |+.+.- .+.|=|..+-+..+. .-.-+.|..+.|+.|.-+++.+ +.|
T Consensus 13 ~c~fSp~g~yi-As~~~y-rlviRd~~tlq~~ql--------------------f~cldki~yieW~ads~~ilC~~yk~ 70 (447)
T KOG4497|consen 13 FCSFSPCGNYI-ASLSRY-RLVIRDSETLQLHQL--------------------FLCLDKIVYIEWKADSCHILCVAYKD 70 (447)
T ss_pred ceeECCCCCee-eeeeee-EEEEeccchhhHHHH--------------------HHHHHHhhheeeeccceeeeeeeecc
Confidence 46899999965 665543 778888877655432 1124578889999998877665 778
Q ss_pred CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccC
Q 001163 440 HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKE 519 (1134)
Q Consensus 440 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 519 (1134)
+.|.+|++...+-.. .+....+++.++.|||||+. .|.+...|-.|.+|.+.+.+.... .-....+..++|+ +
T Consensus 71 ~~vqvwsl~Qpew~c---kIdeg~agls~~~WSPdgrh-iL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~--~ 143 (447)
T KOG4497|consen 71 PKVQVWSLVQPEWYC---KIDEGQAGLSSISWSPDGRH-ILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFH--P 143 (447)
T ss_pred ceEEEEEeecceeEE---EeccCCCcceeeeECCCcce-EeeeecceeEEEEEEeccceeEEe-cccccCceeEEEC--C
Confidence 899999998766444 46677888999999999986 678888899999999988776542 2234445777775 4
Q ss_pred CccEEEEecCCCcEEEEecC---CCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCC
Q 001163 520 NIQFIFSTATDGKIKAWLYD---NLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 596 (1134)
Q Consensus 520 ~~~~l~s~s~dg~i~vwd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 596 (1134)
+|++.+.++.-...-..++. .-.....+....-..+.+.|+|||..|++- |.--.-.+..+ +
T Consensus 144 dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVw-------------d~~Leykv~aY--e 208 (447)
T KOG4497|consen 144 DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVW-------------DNVLEYKVYAY--E 208 (447)
T ss_pred CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEe-------------cchhhheeeee--e
Confidence 55788777653221111111 001112233344467789999999987764 32111111112 2
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCc--------------------ceEEEcCCCcE
Q 001163 597 GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS--------------------PCIRFNKEGIL 656 (1134)
Q Consensus 597 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v--------------------~~v~~sp~~~~ 656 (1134)
.+-.+..++|+|.+++++.|+.|+.++|.+--+-+++..+-. ...+ .|+.|.|..
T Consensus 209 ~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflh---l~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~-- 283 (447)
T KOG4497|consen 209 RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLH---LCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTD-- 283 (447)
T ss_pred eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhcc---chhccCchhhhhhhhhcchhhhcccccccCCCc--
Confidence 222677899999999999999999999977655444433211 1011 112222110
Q ss_pred EEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccC
Q 001163 657 LAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNF 736 (1134)
Q Consensus 657 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 736 (1134)
-...+|.....
T Consensus 284 -------~~a~~~~~se~-------------------------------------------------------------- 294 (447)
T KOG4497|consen 284 -------LEAHIWEESET-------------------------------------------------------------- 294 (447)
T ss_pred -------cccCccccchh--------------------------------------------------------------
Confidence 00111111000
Q ss_pred cccccccccccccccceeeecccCCccceecc----ccCCccccccEEEEEEecCCceeeeeccC--CeEEeeecCCCCC
Q 001163 737 TDVKPKIADEAVEKSRIWKLTEITEPSQCRSL----RLPDNLTAMRVSRLIYTNSGLAILALASN--AVHKLWKWPRNER 810 (1134)
Q Consensus 737 ~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~i~~l~~spdg~~l~~~~~d--g~i~vw~~~~~~~ 810 (1134)
+|+... .+.....+ ..+. ..-.+.-++|++|..++++-.+. ..+-+||+.
T Consensus 295 ----------------~YE~~~--~pv~~~~lkp~tD~pn--Pk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq---- 350 (447)
T KOG4497|consen 295 ----------------IYEQQM--TPVKVHKLKPPTDFPN--PKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQ---- 350 (447)
T ss_pred ----------------hhhhhh--cceeeecccCCCCCCC--cccccceeeecCCceEEeeecCCCCceEEEEech----
Confidence 000000 00000000 0111 23456789999999998888775 455566544
Q ss_pred CcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEE
Q 001163 811 NSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATF 889 (1134)
Q Consensus 811 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~ 889 (1134)
.-++..... ...+|++..|+|....|+.+. ...+++|.......+..-. ..-.|..
T Consensus 351 ------------------~l~l~avLi----Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~-~GF~i~~ 407 (447)
T KOG4497|consen 351 ------------------NLKLHAVLI----QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK-KGFNIQK 407 (447)
T ss_pred ------------------hhhhhhhhh----hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC-CCceeee
Confidence 444333322 468899999999998888887 5679999986655554433 4467999
Q ss_pred EEEcCCCCcEEEEEeCCC
Q 001163 890 LAFHPQDNNIIAIGMEDS 907 (1134)
Q Consensus 890 l~~sp~~~~~la~g~~dg 907 (1134)
+.|.. +|..++..+.|.
T Consensus 408 l~W~~-~g~~i~l~~kDa 424 (447)
T KOG4497|consen 408 LQWLQ-PGEFIVLCGKDA 424 (447)
T ss_pred EEecC-CCcEEEEEcCCc
Confidence 99998 788888888776
No 187
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=1.3e-17 Score=183.23 Aligned_cols=281 Identities=18% Similarity=0.308 Sum_probs=215.9
Q ss_pred EEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCC
Q 001163 351 MTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG 430 (1134)
Q Consensus 351 ~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~ 430 (1134)
+.++|...|+|+.|...|+++ .+|+.|..|+||..+++.++.. +.||++.|+.++.+.+.
T Consensus 185 rLlgH~naVyca~fDrtg~~I-itgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~~n 244 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYI-ITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSSNN 244 (1113)
T ss_pred HHHhhhhheeeeeeccccceE-eecCccceeeeeeccchhhhcc-------------------CCCCccccchhccchhh
Confidence 456799999999999999965 7999999999999999988775 78999999999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEE---ec-CC
Q 001163 431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI---FE-GH 506 (1134)
Q Consensus 431 ~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~---~~-~h 506 (1134)
.++|++|.|..|++|.+..+..+. .+.||++.|++++|+|- .+.+.||++++||.+-.-.++. +. ..
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~ 315 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTE 315 (1113)
T ss_pred hhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCccc
Confidence 999999999999999999998766 68999999999999985 4778999999999871111111 11 11
Q ss_pred CcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC
Q 001163 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 586 (1134)
Q Consensus 507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 586 (1134)
..-+.++.| ..++..+.+++.|+.-..|.+.... .+...+.-+..+.+-..+.... -.+..+.+|++.+
T Consensus 316 ~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~a---r~~~~~~vwnl~~ 384 (1113)
T KOG0644|consen 316 KDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTA---RNDHRLCVWNLYT 384 (1113)
T ss_pred ccceeeeec--cccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceee---eeeeEeeeeeccc
Confidence 234455554 3455778999999998888654211 1111122222222322222222 1255688999999
Q ss_pred CeeEEEecCCCCCceEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCc
Q 001163 587 GAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNG 665 (1134)
Q Consensus 587 ~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~ 665 (1134)
|...+...+|.. .+..+.++|-+..+ .+++.||...|||+-.|.+++.... + ...+....|+++|..++...+-|.
T Consensus 385 g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~-g-h~kl~d~kFSqdgts~~lsd~hgq 461 (1113)
T KOG0644|consen 385 GQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI-G-HGKLVDGKFSQDGTSIALSDDHGQ 461 (1113)
T ss_pred chhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec-c-cceeeccccCCCCceEecCCCCCc
Confidence 999999999887 88899999987655 4678999999999999998887763 2 346778899999999999888899
Q ss_pred EEEEEccCC
Q 001163 666 IKILANADG 674 (1134)
Q Consensus 666 i~iw~~~~~ 674 (1134)
++|.....+
T Consensus 462 l~i~g~gqs 470 (1113)
T KOG0644|consen 462 LYILGTGQS 470 (1113)
T ss_pred eEEeccCCC
Confidence 999876544
No 188
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=1e-15 Score=170.52 Aligned_cols=274 Identities=11% Similarity=0.133 Sum_probs=175.3
Q ss_pred cccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeec-cCCeEEeeecCCCCCCcccccccCCC
Q 001163 743 IADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA-SNAVHKLWKWPRNERNSTGKATTNQA 821 (1134)
Q Consensus 743 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~ 821 (1134)
++...++.|.+|++...........+. ..+....++++|+++.|++++ .++.+.+|+++.
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~-------------- 66 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD-------------- 66 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECC--------------
Confidence 344667999999996321111222221 234567889999999887664 478888887652
Q ss_pred CcccCCCCCcccc-cCCCCCCCCCCeeEEEEcCCCCeEEEee--CCeEEEEEccC-C---eEEEEecCCCCCeEEEEEcC
Q 001163 822 PQLWQPPSGILMT-NDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMT-F---KTMTTFMPPPPAATFLAFHP 894 (1134)
Q Consensus 822 ~~~~d~~~~~~~~-~~~~~~~h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~-~---~~~~~~~~~~~~v~~l~~sp 894 (1134)
++.+.. .... .......++++|+|+++++++ ++.|.+|++.+ + +.+..+. +.....+++++|
T Consensus 67 -------~g~l~~~~~~~---~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p 135 (330)
T PRK11028 67 -------DGALTFAAESP---LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP 135 (330)
T ss_pred -------CCceEEeeeec---CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC
Confidence 111100 0000 123456899999999999887 68999999964 2 2233332 234567889999
Q ss_pred CCCcEE-EEEeCCCcEEEEEcccceEEE-------eccCccCceEEEEEeeCCCEEEEEeC-CCcEEEEECCC--Ccccc
Q 001163 895 QDNNII-AIGMEDSSIQIYNVRVDEVKT-------KLKGHQKRITGLAFSNTLNVLVSSGA-DSQLCVWSTDG--WEKQA 963 (1134)
Q Consensus 895 ~~~~~l-a~g~~dg~i~iwd~~~~~~~~-------~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~iwd~~~--~~~~~ 963 (1134)
+++++ ++...++.|.+||+.+...+. .... ......++|+|||++++++.. +++|.+|+++. ++...
T Consensus 136 -~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~ 213 (330)
T PRK11028 136 -DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC 213 (330)
T ss_pred -CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence 67666 455567999999997632221 1111 233578999999999988876 89999999974 22211
Q ss_pred ceeeeecCCCCCCCCCceEEEEcCCCCEEEEE--eeceEEEEeCCCcccceeeccCCC---ccCEEEEEEccCCCEEEEE
Q 001163 964 SKFLTIPNGRTASALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLECLKQFVPREA---SGPITHATYSCDSQSIYVA 1038 (1134)
Q Consensus 964 ~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~h---~~~v~~~~~s~dg~~l~s~ 1038 (1134)
...+...............+.|+|||++|+++ .++.|.+|++........+. +| ......++|+|||++|+++
T Consensus 214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~--~~~~~~~~p~~~~~~~dg~~l~va 291 (330)
T PRK11028 214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE--GHQPTETQPRGFNIDHSGKYLIAA 291 (330)
T ss_pred EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe--EEEeccccCCceEECCCCCEEEEE
Confidence 11111111111111223468999999999996 46899999996543221221 11 1245578999999999987
Q ss_pred ec-CCcEEEeecC
Q 001163 1039 FE-EGSVGVLTAS 1050 (1134)
Q Consensus 1039 s~-Dg~i~vwd~~ 1050 (1134)
.. +++|.+|+++
T Consensus 292 ~~~~~~v~v~~~~ 304 (330)
T PRK11028 292 GQKSHHISVYEID 304 (330)
T ss_pred EccCCcEEEEEEc
Confidence 76 8999999875
No 189
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.73 E-value=2.3e-16 Score=151.17 Aligned_cols=308 Identities=13% Similarity=0.164 Sum_probs=198.1
Q ss_pred ceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeE
Q 001163 543 SRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMI 622 (1134)
Q Consensus 543 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 622 (1134)
+.+.+..+...++++.|..+++ |+++. ..+.+.+|++.+.+....+.++....|..+..-|+ ..+.+-+.|+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~----~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L 79 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGL----SVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLL 79 (323)
T ss_pred CeeEeccccchheehhhccchh-hhccc----ccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceE
Confidence 4445567777899999988887 55553 35579999999999998888776668888888886 678899999999
Q ss_pred EEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC-cEEEEEccCCceeEEEeccCcccccccchhhhhcccc
Q 001163 623 KFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN-GIKILANADGIRLLRTVESRTFDASRVASAAIVKAPA 701 (1134)
Q Consensus 623 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1134)
.+|++..+..+..-. -.++++.|.+-. +...+... .+..++-+.... .....+
T Consensus 80 ~lw~ia~s~~i~i~S-----i~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~D~------------------ 133 (323)
T KOG0322|consen 80 ILWTIAYSAFISIHS-----IVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQDG------------------ 133 (323)
T ss_pred EEEEccCcceEEEee-----eeccccccccce--eccCCCcchhheecCCcccch-hhhhcc------------------
Confidence 999998765544322 234444444321 11111100 000111000000 000000
Q ss_pred cccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEE
Q 001163 702 IGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSR 781 (1134)
Q Consensus 702 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~ 781 (1134)
+.-..+.+-+ -+..+..+.+.+
T Consensus 134 --------------------------------------------g~~tqv~i~d--------------d~~~~Klgsvmc 155 (323)
T KOG0322|consen 134 --------------------------------------------GDTTQVQIAD--------------DSERSKLGSVMC 155 (323)
T ss_pred --------------------------------------------CccceeEccC--------------chhccccCceee
Confidence 0000011000 001112344444
Q ss_pred EEEec-CCc--eeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeE
Q 001163 782 LIYTN-SGL--AILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYV 858 (1134)
Q Consensus 782 l~~sp-dg~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l 858 (1134)
..+.. ++. .+++|.++|.+.+||++.+... -+......+..... .|..+|.++.|.+.-..=
T Consensus 156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~-------------~~~~~~~kv~~~~a--sh~qpvlsldyas~~~rG 220 (323)
T KOG0322|consen 156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI-------------IQLPQSSKVESPNA--SHKQPVLSLDYASSCDRG 220 (323)
T ss_pred eeccccccceEEEEEeccCCeEEEEEccCCcee-------------eccccccccccchh--hccCcceeeeechhhcCC
Confidence 44222 222 4677888999999998864111 11111111111122 289999999998755555
Q ss_pred EEee-CCeEEEEEccC--Ce--EEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEE
Q 001163 859 MSAS-GGKISLFNMMT--FK--TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGL 933 (1134)
Q Consensus 859 a~~s-dg~i~lwd~~~--~~--~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l 933 (1134)
++++ +..+..|++.. +. ...+.......|..+.+-| |++++|++++|+.||||+.++.+.+..++.|++.|.++
T Consensus 221 isgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~v 299 (323)
T KOG0322|consen 221 ISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAV 299 (323)
T ss_pred cCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEE
Confidence 5666 67788888743 32 2233333456789999999 99999999999999999999999999999999999999
Q ss_pred EEeeCCCEEEEEeCCCcEEEEEC
Q 001163 934 AFSNTLNVLVSSGADSQLCVWST 956 (1134)
Q Consensus 934 ~~s~d~~~l~s~s~Dg~i~iwd~ 956 (1134)
+|+|+...+|.++.|+.|.+|++
T Consensus 300 Afspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 300 AFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999986
No 190
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=2.3e-15 Score=151.78 Aligned_cols=241 Identities=12% Similarity=0.186 Sum_probs=185.0
Q ss_pred CCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEEcccceEE
Q 001163 843 EDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDS--SIQIYNVRVDEVK 920 (1134)
Q Consensus 843 ~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg--~i~iwd~~~~~~~ 920 (1134)
...+..+.|..|...|..|+....++|+................|..+-|+. .++|..+.+. .+++++.+.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 4556777899999999999966678888766554333333344577777875 4777666554 5999999988888
Q ss_pred EeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-E--ee
Q 001163 921 TKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-V--HE 997 (1134)
Q Consensus 921 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~--~d 997 (1134)
+.+. ...+|.++.++ .++|+.+=.+. |+|||+++-+.. ...+...+...++.++++++.+.+||. + ..
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklL-----hTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLL-----HTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccceee-----hhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 7766 55679888886 55677766655 999999985533 222222111134666777777889998 3 66
Q ss_pred ceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCc-EEEeecCCCcceeecCCCcccCCCCCCCceeEE
Q 001163 998 TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGS-VGVLTASTLRLRCRINPTAYLPTNPSLRVYPLV 1076 (1134)
Q Consensus 998 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 1076 (1134)
|.|.+||..+.+.+..+. .|.+.+.+++|++||.+|||+|+.|+ ||||.+.+|+.+..+..+.. + ..|+++
T Consensus 153 GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~----~~IySL- 224 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-P----VSIYSL- 224 (391)
T ss_pred ceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-e----eEEEEE-
Confidence 999999999999998888 89999999999999999999999987 79999999999988886653 2 335555
Q ss_pred EEecCCCCCEEEEEecCCcEEEEeCCCCC
Q 001163 1077 IAGNPTDPNQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus 1077 ~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
+|+| ++++|++.|..++|+++.++...
T Consensus 225 -~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 225 -SFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred -EECC-CCCeEEEecCCCeEEEEEecccc
Confidence 8999 78999999999999999998766
No 191
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.7e-15 Score=141.95 Aligned_cols=285 Identities=13% Similarity=0.138 Sum_probs=194.6
Q ss_pred cEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCe
Q 001163 778 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY 857 (1134)
Q Consensus 778 ~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~ 857 (1134)
.|.+-+++|.+++++++..+|.|.++.+..-.... .-..|+....... +|.++++.++|. ..+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~s-------------a~~~gk~~iv~eq--ahdgpiy~~~f~--d~~ 74 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGS-------------AEPPGKLKIVPEQ--AHDGPIYYLAFH--DDF 74 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccc-------------cCCCCCcceeecc--ccCCCeeeeeee--hhh
Confidence 45556789999999999999999999876321100 0122222222223 499999999997 467
Q ss_pred EEEeeCCeEEEEEccCCe------EEEEec-------CCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEecc
Q 001163 858 VMSASGGKISLFNMMTFK------TMTTFM-------PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK 924 (1134)
Q Consensus 858 la~~sdg~i~lwd~~~~~------~~~~~~-------~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~ 924 (1134)
|++++||.|+-|...... .+.+.+ ..-..|+++-..|..+. +..++.|+.++-||+.+|+..++++
T Consensus 75 Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 75 LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred eeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEEc
Confidence 888889999988764321 111111 12346899999995554 4455589999999999999999999
Q ss_pred CccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCC----CCCCceEEEEcCCCCEEEEEeeceE
Q 001163 925 GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTA----SALADTRVQFHLDQTHLLAVHETQI 1000 (1134)
Q Consensus 925 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~v~~l~fs~dg~~l~~~~d~~i 1000 (1134)
||++-|.+++--.....+.||++||++++||.++++... .+........ .+..|.+++ -+..+|+.|....+
T Consensus 154 GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~--~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~l 229 (325)
T KOG0649|consen 154 GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS--MIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKL 229 (325)
T ss_pred CCcceeeeeeecccCcceeecCCCccEEEEeccccceeE--EeccccChhhcCcccCceeEEEe--ccCceEEecCCCce
Confidence 999999999986666788999999999999999977433 2222111111 113344444 45569999988999
Q ss_pred EEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEec
Q 001163 1001 AIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGN 1080 (1134)
Q Consensus 1001 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 1080 (1134)
.+|.+...++...+.. ..+|..+.|-.| .++++++.+.|.-|.+. |.+...+.... ...++. +|+
T Consensus 230 slwhLrsse~t~vfpi---pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s-------~~c~s~--s~~ 294 (325)
T KOG0649|consen 230 SLWHLRSSESTCVFPI---PARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVES-------TACYSA--SWQ 294 (325)
T ss_pred eEEeccCCCceEEEec---ccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCc-------cceeee--ccc
Confidence 9999999999988875 456777888544 67778888889999874 55444433211 112233 333
Q ss_pred CCCCCEEEEEecCCcEEEE
Q 001163 1081 PTDPNQFALGLTDGGVYII 1099 (1134)
Q Consensus 1081 p~~~~~l~s~~~Dg~v~vW 1099 (1134)
-+--++|-.++....+.++
T Consensus 295 ~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 295 TSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred CCceEEEEecccceeeeee
Confidence 2224566667777777765
No 192
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.71 E-value=2.9e-17 Score=180.54 Aligned_cols=238 Identities=16% Similarity=0.229 Sum_probs=183.3
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 493 (1134)
+.||...|+|+.|...|.++++|++|..|+||..+++.++. ...||.+.|+.++.+.++. +++++|.|..|++|.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~--~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNT--MIAAASNDKVIRVWR 260 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhh--hhhhcccCceEEEEe
Confidence 67999999999999999999999999999999999988776 7899999999999998877 899999999999999
Q ss_pred CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceee---ec-CCCCCeeEEEECcCCCEEEEE
Q 001163 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD---YD-APGHSSTMMAYSADGARLFSC 569 (1134)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~-~~~~~v~~~~~s~~~~~l~~~ 569 (1134)
+.++.++..+++|++.|++++|+|- .+.+.||++++||.+-...... .. .....+.++.|..++..++++
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 9999999999999999999999764 3788999999999872211111 11 122356677777788888888
Q ss_pred ecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceE
Q 001163 570 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCI 648 (1134)
Q Consensus 570 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 648 (1134)
+.++. -..|.... +..+.. .+.-+.++.+- .+.+++-.+-.+++|++.+|.+...+.++ ...+..+
T Consensus 335 s~d~e----a~n~e~~~------l~~~~~-~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~gh--sd~~yvL 401 (1113)
T KOG0644|consen 335 SRDGE----ARNHEFEQ------LAWRSN-LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGH--SDEVYVL 401 (1113)
T ss_pred cCCcc----cccchhhH------hhhhcc-ceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccc--ccceeee
Confidence 76543 23333211 011111 11112222222 45666667888999999999999988866 5578899
Q ss_pred EEcC-CCcEEEEEECCCcEEEEEccCCc
Q 001163 649 RFNK-EGILLAVSTNDNGIKILANADGI 675 (1134)
Q Consensus 649 ~~sp-~~~~l~~~~~dg~i~iw~~~~~~ 675 (1134)
.++| +.+...+++.||...|||+..+.
T Consensus 402 d~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 402 DVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred eecCCCcHhhhhccCCCceEeeecccCC
Confidence 9999 55666789999999999998883
No 193
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=3.8e-16 Score=151.38 Aligned_cols=242 Identities=18% Similarity=0.327 Sum_probs=170.4
Q ss_pred eeEEEee--cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEE
Q 001163 348 TVVMTLN--QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425 (1134)
Q Consensus 348 ~~~~~~~--h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 425 (1134)
+++..+. +-+.|.|+.|.|++..+++. .|..|.+|+++.+..+.. . +......+|+...++-+
T Consensus 113 E~v~~Ldteavg~i~cvew~Pns~klasm--~dn~i~l~~l~ess~~va-e------------v~ss~s~e~~~~ftsg~ 177 (370)
T KOG1007|consen 113 ECVASLDTEAVGKINCVEWEPNSDKLASM--DDNNIVLWSLDESSKIVA-E------------VLSSESAEMRHSFTSGA 177 (370)
T ss_pred hHhhcCCHHHhCceeeEEEcCCCCeeEEe--ccCceEEEEcccCcchhe-e------------ecccccccccceecccc
Confidence 3444444 55699999999999977544 488999999998876321 0 11111234777889999
Q ss_pred EcC--CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC-CceeEE
Q 001163 426 WSP--DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT-GTKQYI 502 (1134)
Q Consensus 426 ~sp--d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~ 502 (1134)
||| ||+.+++. .|+++..||+++..+...+ -.+|...|..+.|+|+-+. +|+||+.||.|+|||.+. ..++++
T Consensus 178 WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~e 253 (370)
T KOG1007|consen 178 WSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQE 253 (370)
T ss_pred cCCCCccceEEEe-CCCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccccc
Confidence 999 88888877 5788999999987655432 3478889999999998776 899999999999999875 467889
Q ss_pred ecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEE
Q 001163 503 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW 582 (1134)
Q Consensus 503 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 582 (1134)
+.+|...|+++.|++..+ ++|++|+.|..|.+|....-.....+ .+--|..- ..+.+....+.
T Consensus 254 l~~HsHWvW~VRfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi----------~~~~dese----~e~~dseer~k-- 316 (370)
T KOG1007|consen 254 LPGHSHWVWAVRFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQI----------EFEDDESE----SEDEDSEERVK-- 316 (370)
T ss_pred cCCCceEEEEEEecCccc-eEEEecCCCceeEEEecccccccccc----------cccccccc----CcchhhHHhcc--
Confidence 999999999999998877 79999999999999976542221111 11111000 00000010111
Q ss_pred eCCCCeeEEEecCCCCCceEEEEEcCCCCEE-EEEeCCCeEEEEEc
Q 001163 583 NESEGAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDM 627 (1134)
Q Consensus 583 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~ 627 (1134)
-+ ....+.++..|.+ .|.+++|+....++ ++-+.||.+.|=.+
T Consensus 317 pL-~dg~l~tydehED-SVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 317 PL-QDGQLETYDEHED-SVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred cc-ccccccccccccc-ceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 11 1223456777777 89999999877665 55679999887544
No 194
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=7.8e-17 Score=170.85 Aligned_cols=261 Identities=11% Similarity=0.194 Sum_probs=185.0
Q ss_pred ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001163 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (1134)
Q Consensus 354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 433 (1134)
.|.+.|++++|.|... .+++++.||++.+|+++....-.... ..+...+.+|.++|.|+++++++..+
T Consensus 292 s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~-----------~epi~tfraH~gPVl~v~v~~n~~~~ 359 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKD-----------VEPILTFRAHEGPVLCVVVPSNGEHC 359 (577)
T ss_pred cchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccc-----------eeeeEEEecccCceEEEEecCCceEE
Confidence 3899999999999988 46899999999999994321111111 11222478999999999999999999
Q ss_pred EEEeCCCEEEEEEccCCce-------eeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCC
Q 001163 434 GVAYSKHIVHLYTYHGGDE-------LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH 506 (1134)
Q Consensus 434 as~s~dg~v~iwd~~~~~~-------~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h 506 (1134)
.+|+.||+|+.|++..... ......+.||.+.|+.+++|+... .|++++.||+++.|+...... .+|...
T Consensus 360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f~~~ 436 (577)
T KOG0642|consen 360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTFGEP 436 (577)
T ss_pred EeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-cccCCc
Confidence 9999999999996642211 112235789999999999999887 699999999999999766555 444322
Q ss_pred C--cCEEEEeccccCCccEEEEecCCCcEEEEe---cCCCCceeeecCC-------CCCeeEEEECcCCCEEEEEecCCC
Q 001163 507 E--SPVYSICPHHKENIQFIFSTATDGKIKAWL---YDNLGSRVDYDAP-------GHSSTMMAYSADGARLFSCGTNKE 574 (1134)
Q Consensus 507 ~--~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd---~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~~~~ 574 (1134)
. +.-.++.+.... ++....+.....++ +........+... ...+.-+.+.|.+...+++..+
T Consensus 437 ~e~g~Plsvd~~ss~----~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed-- 510 (577)
T KOG0642|consen 437 KEHGYPLSVDRTSSR----PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHED-- 510 (577)
T ss_pred cccCCcceEeeccch----hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccC--
Confidence 1 122233332111 11111222333333 3322222222111 1246677788888888887654
Q ss_pred CCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEec
Q 001163 575 GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638 (1134)
Q Consensus 575 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (1134)
..|+++|..+++++.....|.. .++++++.|+|.+|++++.||.+++|.+....++.....
T Consensus 511 --~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 511 --RSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred --Cceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence 4599999999999999988887 899999999999999999999999999987766655543
No 195
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.71 E-value=3.5e-16 Score=149.85 Aligned_cols=246 Identities=16% Similarity=0.198 Sum_probs=182.7
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeee-cCCCCEEEEEEecCCCceEEEEEeCCCeEEE
Q 001163 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i 491 (1134)
++.+|.+.|+++.|-.+++ |.+|..-|.|++|++.+..... .+. .|...|+.+.--|++. +.+-+.|..+.+
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~---~~r~~g~~~it~lq~~p~d~---l~tqgRd~~L~l 81 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP---LIRLFGRLFITNLQSIPNDS---LDTQGRDPLLIL 81 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCccch---hhhhhccceeeceeecCCcc---hhhcCCCceEEE
Confidence 4679999999999998876 8899999999999999876543 355 5778899999999865 899999999999
Q ss_pred EECCCCceeE--------------Eec---------------------------------------CCCcCEEEEecccc
Q 001163 492 WDAVTGTKQY--------------IFE---------------------------------------GHESPVYSICPHHK 518 (1134)
Q Consensus 492 wd~~~~~~~~--------------~~~---------------------------------------~h~~~v~~~~~~~~ 518 (1134)
|++.-+..+. .+. +..+.+.+..+...
T Consensus 82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence 9987532211 000 11223444332221
Q ss_pred C-CccEEEEecCCCcEEEEecCCCCcee----------eecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC-
Q 001163 519 E-NIQFIFSTATDGKIKAWLYDNLGSRV----------DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE- 586 (1134)
Q Consensus 519 ~-~~~~l~s~s~dg~i~vwd~~~~~~~~----------~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~- 586 (1134)
. ..-++++|.++|.|.+||+.++.... ....+..+|.++.+.+....=++++.+ ..+..|++..
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~----dkl~~~Sl~~s 237 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGAD----DKLVMYSLNHS 237 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcc----ccceeeeeccc
Confidence 1 12356788899999999999864333 234456688888888755554555443 2466776653
Q ss_pred -Ce-eEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC
Q 001163 587 -GA-VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 664 (1134)
Q Consensus 587 -~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg 664 (1134)
+. .++......+..+..+.+-||++.+++++-|+.|+||+.++.+++..+..| ...|++++|+|+...+|.++.|+
T Consensus 238 ~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH--sagvn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 238 TGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH--SAGVNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred cCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh--hcceeEEEeCCCCchhhhccCCc
Confidence 22 222222223346788899999999999999999999999999999999977 57899999999999999999999
Q ss_pred cEEEEEc
Q 001163 665 GIKILAN 671 (1134)
Q Consensus 665 ~i~iw~~ 671 (1134)
.|.+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999986
No 196
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=7.8e-16 Score=154.80 Aligned_cols=254 Identities=9% Similarity=0.074 Sum_probs=181.2
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCce---eeeeeee-ecCCCCEEEEEEecCCCceEEEEEeCCCe
Q 001163 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDE---LRNHLEI-EAHVGSVNDLAFSYPNKQLSVVTCGEDRV 488 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~---~~~~~~l-~~h~~~V~~v~~s~~~~~~~l~s~s~d~~ 488 (1134)
-+.+|.+.|+++.||.++++||+|+.|..+++|++..--. .+++... ..|...|.|++|...+. ++++|+.+++
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~~ 128 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGERWGT 128 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCCcce
Confidence 4678999999999999999999999999999999864211 1222111 23567899999998877 8999999999
Q ss_pred EEEEECCCCceeEEecC--CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCcee---eecCCCCCeeEEEECcCC
Q 001163 489 IKVWDAVTGTKQYIFEG--HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV---DYDAPGHSSTMMAYSADG 563 (1134)
Q Consensus 489 i~iwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~~v~~~~~s~~~ 563 (1134)
|...|+++.+.+..+.. ..+.|+.+..+|.. +.+++.+.++.|.+||.+...... .....+....++.|+|..
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 99999999999888753 34589999988874 789999999999999998655222 222234467888999987
Q ss_pred CEEEEEecCCCCCeEEEEEeCCCCe-eEEEecCC---CC--CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Q 001163 564 ARLFSCGTNKEGESYLVEWNESEGA-VKRTYHGL---GK--RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID 637 (1134)
Q Consensus 564 ~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~---~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 637 (1134)
..|+....... -+-+||.+... .+..+.+. .. ..-..+.|+|.|+.+++.-....-.+||+.+..+.....
T Consensus 207 P~Li~~~~~~~---G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 207 PALILVNSETG---GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred ceeEEeccccC---CCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence 66655443322 27889987643 22222111 11 122457899999999887765566678887754433222
Q ss_pred cCC-----CCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 638 ADG-----GLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 638 ~~~-----~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
.|. ....+.+++|.-|. .+++|+++=.|++|.+...
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred cCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCC
Confidence 221 12345677777654 4899999999999987543
No 197
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.70 E-value=4.8e-15 Score=167.03 Aligned_cols=251 Identities=14% Similarity=0.136 Sum_probs=184.3
Q ss_pred cCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEEccCCce--eeeee-eeecCCCCEEEEEEecCCCceEEEEEeCCCeEEE
Q 001163 416 DYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDE--LRNHL-EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (1134)
Q Consensus 416 ~h~~~V~~l~~sp-d~~~las~s~dg~v~iwd~~~~~~--~~~~~-~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i 491 (1134)
.....|.|++|+| +..+||.|..+|.|.+||+..+.. ..... ....|..+++.+.|..+-...-+++++.||.|+.
T Consensus 240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICS 319 (555)
T ss_pred ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEee
Confidence 3567999999999 788899999999999999998765 22111 1346899999999987654335899999999999
Q ss_pred EECCCCcee------EEec------CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCc--------eeeecCCC
Q 001163 492 WDAVTGTKQ------YIFE------GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS--------RVDYDAPG 551 (1134)
Q Consensus 492 wd~~~~~~~------~~~~------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------~~~~~~~~ 551 (1134)
|+++.-... .... .-...++++.|.+... ..++.|+.+|.|.--+...... ...+..|.
T Consensus 320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~ 398 (555)
T KOG1587|consen 320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHI 398 (555)
T ss_pred eeccccccchhhcccccccccccccccccceeeEeeccCCC-ceEEEEcCCcEEEEEeccCCcccccccccccccccccC
Confidence 987643221 1111 1234578888876544 6789999999988743322221 22455677
Q ss_pred CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC-CCeeEEEecCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCC
Q 001163 552 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNES-EGAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDN 629 (1134)
Q Consensus 552 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~ 629 (1134)
+.|+++.++|-+..++..+. +..+++|... ...++..+..+.. .+.+++|||... .|+++..||.|.+||+..
T Consensus 399 g~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred cceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 79999999998876655543 5579999988 6667766666665 699999999875 455666899999999975
Q ss_pred Cc--eeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 630 VN--LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 630 ~~--~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
.. ++.+.... ....+.+.|+++|+.|++|...|.+.+|++...
T Consensus 474 ~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 474 DDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred cccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 44 33333332 456778899999999999999999999998654
No 198
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=5.9e-14 Score=156.42 Aligned_cols=273 Identities=13% Similarity=0.192 Sum_probs=177.6
Q ss_pred eEEEEEeCCCcEEEEecCC-ccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEe-CCCEEEEEEc
Q 001163 370 ILLVVGTNMGDVMLWEVGS-RERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY-SKHIVHLYTY 447 (1134)
Q Consensus 370 ~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s-~dg~v~iwd~ 447 (1134)
+++++...|+.|.+||+.+ ++...... + .+.+....++++||+++|++++ .++.|.+|++
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~-----------------~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~ 64 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQV-----------------V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI 64 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeE-----------------E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence 3556667899999999964 33211111 1 1335677899999999987764 5788999999
Q ss_pred cC-CceeeeeeeeecCCCCEEEEEEecCCCceEEEEEe-CCCeEEEEECCC-C---ceeEEecCCCcCEEEEeccccCCc
Q 001163 448 HG-GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVT-G---TKQYIFEGHESPVYSICPHHKENI 521 (1134)
Q Consensus 448 ~~-~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-~d~~i~iwd~~~-~---~~~~~~~~h~~~v~~~~~~~~~~~ 521 (1134)
.. ++ +...... ...+....++|+|+++ ++++++ .++.|.+||+.+ + +.+..+.+ .....++++++ ++
T Consensus 65 ~~~g~-l~~~~~~-~~~~~p~~i~~~~~g~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p--~g 137 (330)
T PRK11028 65 ADDGA-LTFAAES-PLPGSPTHISTDHQGR--FLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDP--DN 137 (330)
T ss_pred CCCCc-eEEeeee-cCCCCceEEEECCCCC--EEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCC--CC
Confidence 73 33 2211112 1334567899999999 455554 588999999864 3 22333332 23355666754 44
Q ss_pred cEE-EEecCCCcEEEEecCCCCceee-----e-cCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC--C--eeE
Q 001163 522 QFI-FSTATDGKIKAWLYDNLGSRVD-----Y-DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE--G--AVK 590 (1134)
Q Consensus 522 ~~l-~s~s~dg~i~vwd~~~~~~~~~-----~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~--~~~ 590 (1134)
+++ ++...++.|.+||++..+.... . ...+.....++|+|+|++++++.. ....|.+|++.. + +.+
T Consensus 138 ~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 138 RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECV 214 (330)
T ss_pred CEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEE
Confidence 666 4555679999999976432211 1 112345678999999999988753 245699999873 3 333
Q ss_pred EEecCCC-----CCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCc----eeEEEecCCCCCCcceEEEcCCCcEEEEE
Q 001163 591 RTYHGLG-----KRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVN----LLASIDADGGLQASPCIRFNKEGILLAVS 660 (1134)
Q Consensus 591 ~~~~~~~-----~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~sp~~~~l~~~ 660 (1134)
..+.... ......+.++|++++++++. .++.|.+|+++... .+..+.. ......+.++|+|++|+++
T Consensus 215 ~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~va 291 (330)
T PRK11028 215 QTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIAA 291 (330)
T ss_pred EEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEEE
Confidence 3332211 11233588999999999986 57899999986543 2222221 1245689999999999887
Q ss_pred EC-CCcEEEEEccC
Q 001163 661 TN-DNGIKILANAD 673 (1134)
Q Consensus 661 ~~-dg~i~iw~~~~ 673 (1134)
.. +++|.+|++..
T Consensus 292 ~~~~~~v~v~~~~~ 305 (330)
T PRK11028 292 GQKSHHISVYEIDG 305 (330)
T ss_pred EccCCcEEEEEEcC
Confidence 75 89999998753
No 199
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.68 E-value=6e-15 Score=143.21 Aligned_cols=251 Identities=13% Similarity=0.196 Sum_probs=185.3
Q ss_pred ccccccCCCCEEEEEEcC-CCCEEEEEeCC-------CEEEEEEccCCcee------eeeeeee-cCCCCEEEEEEecCC
Q 001163 411 ASLSSDYTASVNRVMWSP-DGTLFGVAYSK-------HIVHLYTYHGGDEL------RNHLEIE-AHVGSVNDLAFSYPN 475 (1134)
Q Consensus 411 ~~~~~~h~~~V~~l~~sp-d~~~las~s~d-------g~v~iwd~~~~~~~------~~~~~l~-~h~~~V~~v~~s~~~ 475 (1134)
...+..|.+.|+.++-+| |.+.|+++..+ ..+.||.+...... .....|. .+-+.|.|+.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 335778999999999999 77788887653 24789998653221 1111233 456689999999999
Q ss_pred CceEEEEEeCCCeEEEEECCCCce-eEEe-----cCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec-
Q 001163 476 KQLSVVTCGEDRVIKVWDAVTGTK-QYIF-----EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD- 548 (1134)
Q Consensus 476 ~~~~l~s~s~d~~i~iwd~~~~~~-~~~~-----~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~- 548 (1134)
. .+++-. |..|.+|++..+.. +..+ .+|....++-+|+|..+|+.+++.+ |+++..||+++......+.
T Consensus 136 ~--klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~d 211 (370)
T KOG1007|consen 136 D--KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIED 211 (370)
T ss_pred C--eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhh
Confidence 8 466555 88999999988766 3333 2355667778899988888887765 7999999999887766654
Q ss_pred CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC-eeEEEecCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEE
Q 001163 549 APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWD 626 (1134)
Q Consensus 549 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd 626 (1134)
.|+..|..+.|+|+-.++++.+.| ++.|++||.+.. .++..+.+|.- .+.++.|+|.. ..+++++.|..|.+|.
T Consensus 212 AHgq~vrdlDfNpnkq~~lvt~gD---dgyvriWD~R~tk~pv~el~~HsH-WvW~VRfn~~hdqLiLs~~SDs~V~Lsc 287 (370)
T KOG1007|consen 212 AHGQRVRDLDFNPNKQHILVTCGD---DGYVRIWDTRKTKFPVQELPGHSH-WVWAVRFNPEHDQLILSGGSDSAVNLSC 287 (370)
T ss_pred hhcceeeeccCCCCceEEEEEcCC---CccEEEEeccCCCccccccCCCce-EEEEEEecCccceEEEecCCCceeEEEe
Confidence 566789999999998765544432 456999999865 57778888876 99999999976 5677888999999997
Q ss_pred cCCCc-----------------------------eeEEEecCCCCCCcceEEEcC-CCcEEEEEECCCcEEEEEc
Q 001163 627 MDNVN-----------------------------LLASIDADGGLQASPCIRFNK-EGILLAVSTNDNGIKILAN 671 (1134)
Q Consensus 627 ~~~~~-----------------------------~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~~dg~i~iw~~ 671 (1134)
..+-. .+.++. .|.+.|++++|+. |.-.+|+-+.||.+.|=.+
T Consensus 288 a~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd--ehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 288 ASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD--EHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccccccccccccccccCcchhhHHhccccccccccccc--ccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 63211 112233 3477899999998 5566788899999987544
No 200
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=8e-15 Score=165.85 Aligned_cols=200 Identities=18% Similarity=0.200 Sum_probs=148.3
Q ss_pred EEcCCCCeEEEee-CCeEEEEEccCCeEEEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccc---eEEEecc
Q 001163 850 ALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMP-PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD---EVKTKLK 924 (1134)
Q Consensus 850 ~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~---~~~~~l~ 924 (1134)
.|.....+|++++ -..|+|||...-.....+.. ...-++++.-+...|.++|+|..||.|++||.+.. ..+...+
T Consensus 1172 dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred ehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence 3444334444444 57799999988777766543 34457887776657899999999999999998754 3567888
Q ss_pred CccCc--eEEEEEeeCCCE-EEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEE
Q 001163 925 GHQKR--ITGLAFSNTLNV-LVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIA 1001 (1134)
Q Consensus 925 ~h~~~--V~~l~~s~d~~~-l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~ 1001 (1134)
.|++. |..+.+-+.|-. |++|+.||.|++||+....... .+.+.. +...++..+++..+++...+|+|+.+.|+
T Consensus 1252 ~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~--~~~iv~-~~~yGs~lTal~VH~hapiiAsGs~q~ik 1328 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET--FLTIVA-HWEYGSALTALTVHEHAPIIASGSAQLIK 1328 (1387)
T ss_pred ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc--cceeee-ccccCccceeeeeccCCCeeeecCcceEE
Confidence 89988 999999887754 9999999999999998843222 222221 11011348999999999999998779999
Q ss_pred EEeCCCcccceeecc-----CCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCc
Q 001163 1002 IYEAPKLECLKQFVP-----REASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLR 1053 (1134)
Q Consensus 1002 iwd~~~~~~~~~~~~-----~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~ 1053 (1134)
||++. |+.+..+.. ....+.+.+++|+|-.-+||+|+.|.+|.||......
T Consensus 1329 Iy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1329 IYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred EEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 99997 444444331 1125678999999999999999999999999977654
No 201
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=8.5e-14 Score=140.58 Aligned_cols=241 Identities=12% Similarity=0.114 Sum_probs=184.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC--CeEEEEEC
Q 001163 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED--RVIKVWDA 494 (1134)
Q Consensus 417 h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d--~~i~iwd~ 494 (1134)
....+..+.|+.|...|..|+.|| -++++........ ........|..+-|+ .. ++|..+.+ +.+++.+.
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFS--SS--LvaiV~~~qpr~Lkv~~~ 75 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFS--SS--LVAIVSIKQPRKLKVVHF 75 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecc--cc--eeEEEecCCCceEEEEEc
Confidence 345677888999999999999999 6888877644321 122233346666676 44 44444433 46999999
Q ss_pred CCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCC---CCCeeEEEECcCCCEEEEEec
Q 001163 495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP---GHSSTMMAYSADGARLFSCGT 571 (1134)
Q Consensus 495 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~ 571 (1134)
+.+..+..+. ...+|.++.++. +.|+.+-.+ .|+|||+.+.+....+... ...+.++.+++.+.+++.-+.
T Consensus 76 Kk~~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s 149 (391)
T KOG2110|consen 76 KKKTTICEIF-FPTSILAVRMNR----KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS 149 (391)
T ss_pred ccCceEEEEe-cCCceEEEEEcc----ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC
Confidence 9888887776 556788888743 446555544 4999999998887766543 235666777777778887643
Q ss_pred CCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCe-EEEEEcCCCceeEEEecCCCCCCcceEEE
Q 001163 572 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM-IKFWDMDNVNLLASIDADGGLQASPCIRF 650 (1134)
Q Consensus 572 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 650 (1134)
-. .+.|++||..+-+.+..+..|.. .+.+++|+++|..|+++++.|+ |||+.+.+|+.+..+........|.+++|
T Consensus 150 ~t--~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~F 226 (391)
T KOG2110|consen 150 TT--SGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSF 226 (391)
T ss_pred CC--CceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEE
Confidence 22 45599999999999999998887 9999999999999999999887 69999999999999875444556889999
Q ss_pred cCCCcEEEEEECCCcEEEEEccCC
Q 001163 651 NKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 651 sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
+|++.+|++.++.++|++|.+...
T Consensus 227 s~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 227 SPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCCCeEEEecCCCeEEEEEeccc
Confidence 999999999999999999998754
No 202
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=9.8e-15 Score=167.51 Aligned_cols=235 Identities=12% Similarity=0.092 Sum_probs=163.2
Q ss_pred CCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCC---CEEEEEEccCCceee
Q 001163 378 MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELR 454 (1134)
Q Consensus 378 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~d---g~v~iwd~~~~~~~~ 454 (1134)
+..|.+||.+...... +..|...|.+.+|||||++||.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~~--------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQFI--------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCceE--------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 4689999987654221 46688899999999999999988654 479999998876322
Q ss_pred eeeeeecCCCCEEEEEEecCCCceEEEEE-eCCCeEEE--EECCCCceeEEecCCCcCEEEEeccccCCccEEE-EecCC
Q 001163 455 NHLEIEAHVGSVNDLAFSYPNKQLSVVTC-GEDRVIKV--WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIF-STATD 530 (1134)
Q Consensus 455 ~~~~l~~h~~~V~~v~~s~~~~~~~l~s~-s~d~~i~i--wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~d 530 (1134)
...+.+| ...++|+|||+ .|+.+ +.++.+.| ||+.+++ +..+..+...+....|++ ||..|+ +...+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP--DGQSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC--CCCEEEEEECCC
Confidence 2234444 34689999999 45544 56776555 4666655 455666777777788865 456555 44567
Q ss_pred CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCC
Q 001163 531 GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK 610 (1134)
Q Consensus 531 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 610 (1134)
+...+|+++..........+.. ....|+|||+.++..+.+ .+.+||+.+++........ ....+.|+|++
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~-----~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG 383 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGD-----NVVKQDLTSGSTEVLSSTF---LDESPSISPNG 383 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCC-----CEEEEECCCCCeEEecCCC---CCCCceECCCC
Confidence 8889998765433222222222 457899999999887642 2777999988765433332 23457899999
Q ss_pred CEEEEEeCCCeEEEEEc--CCCceeEEEecCCCCCCcceEEEcCC
Q 001163 611 NRFLAAGDEFMIKFWDM--DNVNLLASIDADGGLQASPCIRFNKE 653 (1134)
Q Consensus 611 ~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~sp~ 653 (1134)
+.|+.++.++.+.+|++ .+|+.+..+..+ ...+...+|+|-
T Consensus 384 ~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~--~g~~~~p~wsp~ 426 (429)
T PRK01742 384 IMIIYSSTQGLGKVLQLVSADGRFKARLPGS--DGQVKFPAWSPY 426 (429)
T ss_pred CEEEEEEcCCCceEEEEEECCCCceEEccCC--CCCCCCcccCCC
Confidence 99999998898888875 357777777644 456788999984
No 203
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.66 E-value=1.4e-14 Score=163.30 Aligned_cols=270 Identities=16% Similarity=0.209 Sum_probs=195.2
Q ss_pred cccCCCCCceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCC
Q 001163 339 SYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT 418 (1134)
Q Consensus 339 ~~~~d~~~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 418 (1134)
.|+.++. ......+.....|+|++|+|....++|.|+.+|.|.+||+..+...... ........|.
T Consensus 226 vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s-------------~ls~~~~sh~ 291 (555)
T KOG1587|consen 226 VWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS-------------GLSALEVSHS 291 (555)
T ss_pred EEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc-------------ccccccccCC
Confidence 3444443 5677788899999999999999999999999999999999887652100 0111246799
Q ss_pred CCEEEEEEcCCC--CEEEEEeCCCEEEEEEccCCceeeeeeeee---------cCCCCEEEEEEecCCCceEEEEEeCCC
Q 001163 419 ASVNRVMWSPDG--TLFGVAYSKHIVHLYTYHGGDELRNHLEIE---------AHVGSVNDLAFSYPNKQLSVVTCGEDR 487 (1134)
Q Consensus 419 ~~V~~l~~spd~--~~las~s~dg~v~iwd~~~~~~~~~~~~l~---------~h~~~V~~v~~s~~~~~~~l~s~s~d~ 487 (1134)
.+|+.+.|-.+. .-+++++.||.|+.|+++.-........+. .-...+++++|.+.... .++.|+.+|
T Consensus 292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G 370 (555)
T KOG1587|consen 292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEG 370 (555)
T ss_pred cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCc
Confidence 999999998754 459999999999999887543211111111 12246899999998776 689999999
Q ss_pred eEEE---EECCCCc-----eeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecC-CCCceeeecCCCCCeeEEE
Q 001163 488 VIKV---WDAVTGT-----KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD-NLGSRVDYDAPGHSSTMMA 558 (1134)
Q Consensus 488 ~i~i---wd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~ 558 (1134)
.|.. ++...+. .+..+..|.++|.++.++|=.. ..+.+++ |.++++|.-. ...+...+..+...+.+++
T Consensus 371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~va 448 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVA 448 (555)
T ss_pred EEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeE
Confidence 8877 3333222 2335667899999998765443 3444444 9999999877 5556666666666799999
Q ss_pred ECcCCCEEEEEecCCCCCeEEEEEeCCCC--eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001163 559 YSADGARLFSCGTNKEGESYLVEWNESEG--AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 629 (1134)
Q Consensus 559 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 629 (1134)
|||-...++.+. ++++.|.+||+... .++.+.... ......+.|++.|..+++|...|.+.+|++..
T Consensus 449 WSptrpavF~~~---d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 449 WSPTRPAVFATV---DGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EcCcCceEEEEE---cCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 999887666554 34667999998754 344444333 23567788999999999999999999999854
No 204
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1.3e-14 Score=164.07 Aligned_cols=291 Identities=13% Similarity=0.202 Sum_probs=204.3
Q ss_pred CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC--CCCEEEE
Q 001163 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTLFGV 435 (1134)
Q Consensus 358 ~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~~las 435 (1134)
.-..+.|+|-... ++++...-.|+|||++.++.+..+. . -......|+.+.+-. |..++++
T Consensus 1066 ~pk~~~~hpf~p~-i~~ad~r~~i~vwd~e~~~~l~~F~-----n-----------~~~~~t~Vs~l~liNe~D~aLlLt 1128 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQ-IAAADDRERIRVWDWEKGRLLNGFD-----N-----------GAFPDTRVSDLELINEQDDALLLT 1128 (1387)
T ss_pred CCceeeecCCCce-eEEcCCcceEEEEecccCceecccc-----C-----------CCCCCCccceeeeecccchhheee
Confidence 5667889998884 4666666789999999998765321 1 112446888998876 6779999
Q ss_pred EeCCCEEEEEEcc-CC----ceeeeeeeeecC----CCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEec-C
Q 001163 436 AYSKHIVHLYTYH-GG----DELRNHLEIEAH----VGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE-G 505 (1134)
Q Consensus 436 ~s~dg~v~iwd~~-~~----~~~~~~~~l~~h----~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~ 505 (1134)
|+.||.|+||+-. .+ +.+.....+.++ .+.=.-+.|..... +|+++|.-..|+|||.....++..+. +
T Consensus 1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~diP~~ 1206 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVADIPYG 1206 (1387)
T ss_pred eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEeecccC
Confidence 9999999999643 22 222222222222 12224467777666 56666668899999999888887664 3
Q ss_pred CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCc---eeeecCCCCC--eeEEEECcCCCE-EEEEecCCCCCeEE
Q 001163 506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS---RVDYDAPGHS--STMMAYSADGAR-LFSCGTNKEGESYL 579 (1134)
Q Consensus 506 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~--v~~~~~s~~~~~-l~~~~~~~~~~~~i 579 (1134)
....|+++.-+. ..|+.+++|..||.|++||.+.... +.....|... |..+.+.+.|-. |++++.+|+ |
T Consensus 1207 s~t~vTaLS~~~-~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~----I 1281 (1387)
T KOG1517|consen 1207 SSTLVTALSADL-VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD----I 1281 (1387)
T ss_pred CCccceeecccc-cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe----E
Confidence 455677776543 3368999999999999999876543 2334445554 889999887754 888887654 9
Q ss_pred EEEeCCCCeeEE--EecCCC--CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC-----CCCCCcceEEE
Q 001163 580 VEWNESEGAVKR--TYHGLG--KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD-----GGLQASPCIRF 650 (1134)
Q Consensus 580 ~~wd~~~~~~~~--~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~ 650 (1134)
++||++...... +...+. ++..+++..++....+++|+. +.|+||++.. +.+..+... .....+.|++|
T Consensus 1282 ~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~F 1359 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAF 1359 (1387)
T ss_pred EEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeee
Confidence 999999742221 222222 224888999999999999988 9999999864 333333221 12346789999
Q ss_pred cCCCcEEEEEECCCcEEEEEccCC
Q 001163 651 NKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 651 sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
+|..-++|+|+.|.+|.||.....
T Consensus 1360 HP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1360 HPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cchhHhhhhccCCceEEEeecCCc
Confidence 999999999999999999987654
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=8.7e-16 Score=157.98 Aligned_cols=198 Identities=16% Similarity=0.180 Sum_probs=161.1
Q ss_pred eEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccC
Q 001163 847 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG 925 (1134)
Q Consensus 847 ~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~ 925 (1134)
..++|+.+|..|+++. ||++|+|+..+...+.....|.+.|.++.|+| |+++|++-+.| ..+||++.+|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999988888888888999999999999 99999999999 899999999977766553
Q ss_pred --ccCceEEEEEeeCC-----CEEEEEeCCCcEEEEECCCCccccc-eeeeecCCCCCCCCCceEEEEcCCCCEEEEE-e
Q 001163 926 --HQKRITGLAFSNTL-----NVLVSSGADSQLCVWSTDGWEKQAS-KFLTIPNGRTASALADTRVQFHLDQTHLLAV-H 996 (1134)
Q Consensus 926 --h~~~V~~l~~s~d~-----~~l~s~s~Dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~ 996 (1134)
-......+.|+.|+ ...++...-+.|+.|++..+..... +..+....+ ..|.+++.|+||++++.| .
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEecc
Confidence 23345678888877 3444455567788888876654211 111111222 359999999999999995 8
Q ss_pred eceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCC
Q 001163 997 ETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAST 1051 (1134)
Q Consensus 997 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~ 1051 (1134)
||.|.||+..+.+++.... +.|..-|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus 302 dGsVai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999888876655 58999999999999999999999999999888754
No 206
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=5.3e-14 Score=162.11 Aligned_cols=255 Identities=13% Similarity=0.078 Sum_probs=182.0
Q ss_pred cccCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEEccCC----ceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCe
Q 001163 414 SSDYTASVNRVMWSPDG-TLFGVAYSKHIVHLYTYHGG----DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV 488 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~-~~las~s~dg~v~iwd~~~~----~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~ 488 (1134)
+..|+..|..++.++.. .++++||.||+|++||...- ...+...++..-..++.++.+.+.+. .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 66799999999998855 99999999999999998632 22333334444567899999999999 6888899999
Q ss_pred EEEEECCCC--c-----eeEEecCC-CcCEEEE-eccccCCccEEEEecCCCcEEEEecCCCCceee--ecCCCCCeeEE
Q 001163 489 IKVWDAVTG--T-----KQYIFEGH-ESPVYSI-CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD--YDAPGHSSTMM 557 (1134)
Q Consensus 489 i~iwd~~~~--~-----~~~~~~~h-~~~v~~~-~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~ 557 (1134)
|++.++... + +.+....+ .+.+.++ ++........++.+...+.|..||.+....... .....+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999998762 1 11112222 2334444 333322223788888889999999987665544 34456689999
Q ss_pred EECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCC---CEEEEEe--CCCeEEEEEcCCCce
Q 001163 558 AYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK---NRFLAAG--DEFMIKFWDMDNVNL 632 (1134)
Q Consensus 558 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~--~dg~i~iwd~~~~~~ 632 (1134)
+.+|.+.++++|.. .+.+.+||++-+.++..+......++..++.+|-. ...++++ ..+.|.+|++.+|..
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 99999999999865 44699999999999988876655677777666543 4555544 578899999999876
Q ss_pred eEEEecC-C----------------CCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 633 LASIDAD-G----------------GLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 633 ~~~~~~~-~----------------~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
...+-.. + +........+...+..+.+|+.|..||.||....
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 6655332 0 0111123334445568899999999999998765
No 207
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.65 E-value=1.8e-12 Score=148.28 Aligned_cols=194 Identities=13% Similarity=0.167 Sum_probs=149.7
Q ss_pred CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCC-----CEEEEEEcCCCCE
Q 001163 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTA-----SVNRVMWSPDGTL 432 (1134)
Q Consensus 358 ~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~spd~~~ 432 (1134)
.|....+.-+.+ .++.++.+..+.|||...+..... ..+.. ...-+-++++.-+
T Consensus 89 wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~--------------------i~~~er~~l~~~~~~g~s~~~~~ 147 (967)
T KOG0974|consen 89 WIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSK--------------------IQSDERCTLYSSLIIGDSAEELY 147 (967)
T ss_pred cccccchhhhcc-eEEEEEcCceEEEEecccCceehh--------------------cCCCceEEEEeEEEEeccCcEEE
Confidence 344455555555 467888899999999987765432 11211 2223456778889
Q ss_pred EEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE-EecCCCcCEE
Q 001163 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY-IFEGHESPVY 511 (1134)
Q Consensus 433 las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~h~~~v~ 511 (1134)
+++|+.-+.|.+|+........ .+.||.+.|.++.|+-||. +++|.|.|.++++|++++++.+. +..+|.+.|+
T Consensus 148 i~~gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw 222 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVW 222 (967)
T ss_pred EEeccccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeE
Confidence 9999999999999988332211 4889999999999999999 89999999999999999998876 6778999999
Q ss_pred EEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC-CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC
Q 001163 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG-HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 586 (1134)
Q Consensus 512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 586 (1134)
.+++.+. .+++++.|-+.++|+.+..... .+..|. ..+..++..++...+++++.|+ .+++||+..
T Consensus 223 ~~~~~~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds----~lk~~~l~~ 289 (967)
T KOG0974|consen 223 ACCFLPN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDS----TLKLWDLNG 289 (967)
T ss_pred EEEeccc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCc----chhhhhhhc
Confidence 9999653 7999999999999976543333 444443 4788999999988899988654 489998764
No 208
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.6e-15 Score=155.97 Aligned_cols=197 Identities=20% Similarity=0.205 Sum_probs=153.2
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceee
Q 001163 888 TFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFL 967 (1134)
Q Consensus 888 ~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~ 967 (1134)
.+++|+. +|..|++|+.||++|||+..+...+.....|.+.|.++.|||||++|++.+.| ..+||+..++...
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~----- 220 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAAL----- 220 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchh-----
Confidence 7899999 88999999999999999988888888888899999999999999999999999 7999999997422
Q ss_pred eecCCCCCCCCCceEEEEcCCC---CE-EEE-E-eeceEEEEeCCCccc-----ceeeccCCCccCEEEEEEccCCCEEE
Q 001163 968 TIPNGRTASALADTRVQFHLDQ---TH-LLA-V-HETQIAIYEAPKLEC-----LKQFVPREASGPITHATYSCDSQSIY 1036 (1134)
Q Consensus 968 ~~~~~~~~~~~~v~~l~fs~dg---~~-l~~-~-~d~~i~iwd~~~~~~-----~~~~~~~~h~~~v~~~~~s~dg~~l~ 1036 (1134)
+.... .........+.|+.|+ .+ +++ . .-+.|+.||+..... ..+.. .-...|++++.|+||++++
T Consensus 221 a~~t~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~--~~~~siSsl~VS~dGkf~A 297 (398)
T KOG0771|consen 221 ARKTP-FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI--KRFKSISSLAVSDDGKFLA 297 (398)
T ss_pred hhcCC-cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh--hccCcceeEEEcCCCcEEE
Confidence 21111 1111346788999887 33 233 2 335666666543222 11111 1245899999999999999
Q ss_pred EEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163 1037 VAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus 1037 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
.|+.||.|.|++..+.+.+. +.+..|...|+.+ .|+| |.+++++.+.|.+.++..+.-
T Consensus 298 lGT~dGsVai~~~~~lq~~~------~vk~aH~~~VT~l--tF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 298 LGTMDGSVAIYDAKSLQRLQ------YVKEAHLGFVTGL--TFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EeccCCcEEEEEeceeeeeE------eehhhheeeeeeE--EEcC-CcCcccccccCCceeEEEEee
Confidence 99999999999998877652 4455688988888 8889 789999999999999998865
No 209
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.63 E-value=6.2e-14 Score=136.43 Aligned_cols=242 Identities=14% Similarity=0.184 Sum_probs=174.2
Q ss_pred CCCCCeeEEEEcCCCC----eEEEeeCCeEEEEEccCCeE----EEEec-----CCCCCeEEEEEcCCCCcEEEEEeCCC
Q 001163 841 NPEDAVPCFALSKNDS----YVMSASGGKISLFNMMTFKT----MTTFM-----PPPPAATFLAFHPQDNNIIAIGMEDS 907 (1134)
Q Consensus 841 ~h~~~v~~v~~s~dg~----~la~~sdg~i~lwd~~~~~~----~~~~~-----~~~~~v~~l~~sp~~~~~la~g~~dg 907 (1134)
.|..+++.+.|.|+.. -|++.++..+|+|.+..-+. ...+. .+..++++..|..-+.+++.+.+-|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 3899999999999874 23444567899999863211 11121 24567999999887889999999999
Q ss_pred cEEEEEcccce---EEEeccCccCceEEEEEeeCC-CEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEE
Q 001163 908 SIQIYNVRVDE---VKTKLKGHQKRITGLAFSNTL-NVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRV 983 (1134)
Q Consensus 908 ~i~iwd~~~~~---~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l 983 (1134)
+..|||+.++. +...+-+|..+|..++|+..+ ..+||+|.||.|++||+..-+ + ..-+.++..+ ..+...+
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le--H--STIIYE~p~~-~~pLlRL 248 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE--H--STIIYEDPSP-STPLLRL 248 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc--c--ceEEecCCCC-CCcceee
Confidence 99999999863 456788999999999999865 578999999999999998744 1 1112222221 2467888
Q ss_pred EEcCC-CCEEEE-E-eeceEEEEeCCCc-ccceeeccCCCccCEEEEEEccCC-CEEEEEecCCcEEEeecCCCcceeec
Q 001163 984 QFHLD-QTHLLA-V-HETQIAIYEAPKL-ECLKQFVPREASGPITHATYSCDS-QSIYVAFEEGSVGVLTASTLRLRCRI 1058 (1134)
Q Consensus 984 ~fs~d-g~~l~~-~-~d~~i~iwd~~~~-~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~Dg~i~vwd~~~~~~~~~~ 1058 (1134)
+|++. -+++|+ + ....|.|.|++.. ..+..+. +|.+.|..++|.|.. ..|.|+++|..+.+||+...-.....
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~--~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~ 326 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR--NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGE 326 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh--cCcccccceEecCCCCceeeecCCcceEEEEecccccccCCC
Confidence 98874 456666 4 4578999999853 3445554 999999999999965 56999999999999999875431111
Q ss_pred CCCcccCCCCCCCceeEEEEecCCCCCEEEEEecC
Q 001163 1059 NPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTD 1093 (1134)
Q Consensus 1059 ~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~D 1093 (1134)
.+..... -.+.|..+ .|+|..++.++.+...
T Consensus 327 dPilay~--a~~EVNqi--~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 327 DPILAYT--AGGEVNQI--QWSSSQPDWIAICFGK 357 (364)
T ss_pred Cchhhhh--ccceeeee--eecccCCCEEEEEecC
Confidence 1111111 23556666 8888778888877654
No 210
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=8.3e-14 Score=137.79 Aligned_cols=229 Identities=14% Similarity=0.118 Sum_probs=174.0
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
...+|+|.+|++|+. .+|++.....|.||.......-. ..+.+..|...|+++.|+|..+.|+
T Consensus 9 ~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred ccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCcee
Confidence 457899999999998 56888899999999987765221 1234788999999999999999999
Q ss_pred EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCcee----EEecCCCcCE
Q 001163 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ----YIFEGHESPV 510 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~----~~~~~h~~~v 510 (1134)
+|+.|..-+||....+..-++...+..|....++|.|+|.++ .+++||.-..|.||=.+..+-- +.-+.+...|
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 999999999999966666777777888999999999999999 7999999999999987655432 1223467889
Q ss_pred EEEeccccCCccEEEEecCCCcEEEEec-----CCC-------------CceeeecCCCCCeeEEEECcCCCEEEEEecC
Q 001163 511 YSICPHHKENIQFIFSTATDGKIKAWLY-----DNL-------------GSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572 (1134)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~-----~~~-------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 572 (1134)
.++.|++++ -++++|+.|+..+++.. +.. ....++...++.+..+.|+|+|..|+-.+.|
T Consensus 150 ~sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd 227 (361)
T KOG1523|consen 150 TSLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHD 227 (361)
T ss_pred eeeeccCCc--ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCC
Confidence 999998765 78999999999999853 111 1111233456689999999999999998875
Q ss_pred CCCCeEEEEEeCCCCe-eEEEecCCCCCceEEEEEcCC
Q 001163 573 KEGESYLVEWNESEGA-VKRTYHGLGKRSVGVVQFDTT 609 (1134)
Q Consensus 573 ~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~ 609 (1134)
. .+.+-|..... .+........ +..++.|-.+
T Consensus 228 s----~v~~~da~~p~~~v~~~~~~~l-P~ls~~~ise 260 (361)
T KOG1523|consen 228 S----TVSFVDAAGPSERVQSVATAQL-PLLSVSWISE 260 (361)
T ss_pred C----ceEEeecCCCchhccchhhccC-CceeeEeecC
Confidence 4 47777766554 2333333222 5555555443
No 211
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=3.5e-15 Score=155.27 Aligned_cols=324 Identities=16% Similarity=0.207 Sum_probs=224.0
Q ss_pred eeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe-cCCCcCEEEEeccccCCccEEEEecCCCcEEEE
Q 001163 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536 (1134)
Q Consensus 458 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vw 536 (1134)
.|..|.+.|..|.|+..|. .|+|||.|..|.+||+..+..+..| .||...|....|.|..+...+++++.||.|++=
T Consensus 137 kL~~H~GcVntV~FN~~Gd--~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGD--VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred cccCCCCccceeeecccCc--eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 5889999999999999999 8999999999999999999888777 569888988888888887899999999998865
Q ss_pred ecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCC-CEEEE
Q 001163 537 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK-NRFLA 615 (1134)
Q Consensus 537 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~ 615 (1134)
.+...+.. +-...+..|.+ .+..++.-|+. .-|++
T Consensus 215 ~i~~t~~~-------------------------------------------e~t~rl~~h~g-~vhklav~p~sp~~f~S 250 (559)
T KOG1334|consen 215 EILETGYV-------------------------------------------ENTKRLAPHEG-PVHKLAVEPDSPKPFLS 250 (559)
T ss_pred eeccccce-------------------------------------------ecceecccccC-ccceeeecCCCCCcccc
Confidence 33211100 00111222333 67777777765 46888
Q ss_pred EeCCCeEEEEEcCCCceeEEEecCCC-C---CCcceEEEcCCC-cEEEEEECCCcEEEEEccCCceeEEEeccCcccccc
Q 001163 616 AGDEFMIKFWDMDNVNLLASIDADGG-L---QASPCIRFNKEG-ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASR 690 (1134)
Q Consensus 616 ~~~dg~i~iwd~~~~~~~~~~~~~~~-~---~~v~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 690 (1134)
+++|+.+.-+|++.+.+...+..... . ...+.++.+|.. ..+++++.|..+++||...-... ...+ .+.
T Consensus 251 ~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e--~~n~---~~~- 324 (559)
T KOG1334|consen 251 CGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE--ENNG---VLD- 324 (559)
T ss_pred cccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc--cccc---hhh-
Confidence 89999999999988765544432211 1 245688888844 58999999999999986532100 0000 000
Q ss_pred cchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceecccc
Q 001163 691 VASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRL 770 (1134)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 770 (1134)
.+.|.. +.
T Consensus 325 --------------------~f~p~h---------------------------------------------------l~- 332 (559)
T KOG1334|consen 325 --------------------KFCPHH---------------------------------------------------LV- 332 (559)
T ss_pred --------------------hcCCcc---------------------------------------------------cc-
Confidence 011110 00
Q ss_pred CCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEE
Q 001163 771 PDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFA 850 (1134)
Q Consensus 771 ~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~ 850 (1134)
....-.|++++|+.++.-+++...|-.|++++-.... |....... +. .........|+-....|..+-
T Consensus 333 --~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~----G~~p~~~s-----~~-~~~~k~vYKGHrN~~TVKgVN 400 (559)
T KOG1334|consen 333 --EDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD----GSEPDPSS-----PR-EQYVKRVYKGHRNSRTVKGVN 400 (559)
T ss_pred --ccCcccceeEEecCCccceeeeecccceEEecccccc----CCCCCCCc-----ch-hhccchhhcccccccccceee
Confidence 0134679999999999989999999999988432110 10000000 00 011122233412234466775
Q ss_pred E-cCCCCeEEEeeC-CeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce
Q 001163 851 L-SKNDSYVMSASG-GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE 918 (1134)
Q Consensus 851 ~-s~dg~~la~~sd-g~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~ 918 (1134)
| -|...|+++|+| |.|.||+-.+++.++-+.+...-|+||.-+| --.+||+.+-|..|+||...+.+
T Consensus 401 FfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 401 FFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP-HLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred eccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC-CCchhhccCCccceeeecCCccc
Confidence 4 588899999997 8999999999999999998888999999999 67799999999999999875443
No 212
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.62 E-value=4.6e-13 Score=147.86 Aligned_cols=318 Identities=11% Similarity=0.099 Sum_probs=199.5
Q ss_pred CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCc
Q 001163 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI 655 (1134)
Q Consensus 576 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 655 (1134)
++.|.+.|..+.+.+.++..... .-..+.|+||++++++++.||.|.++|+.+++.+.++... .....+++++||+
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G---~~~~~i~~s~DG~ 90 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGGA-PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG---GNPRGIAVSPDGK 90 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-STT-EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S---SEEEEEEE--TTT
T ss_pred CCEEEEEECCCCeEEEEEcCCCC-ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC---CCcceEEEcCCCC
Confidence 44699999999999999987654 3455789999999999999999999999999999998753 2357899999999
Q ss_pred EEEEEE-CCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCc
Q 001163 656 LLAVST-NDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSR 734 (1134)
Q Consensus 656 ~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 734 (1134)
+++++. .++.+.++|..+. +.++.+......
T Consensus 91 ~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~----------------------------------------------- 122 (369)
T PF02239_consen 91 YVYVANYEPGTVSVIDAETL-EPVKTIPTGGMP----------------------------------------------- 122 (369)
T ss_dssp EEEEEEEETTEEEEEETTT---EEEEEE--EE------------------------------------------------
T ss_pred EEEEEecCCCceeEeccccc-cceeeccccccc-----------------------------------------------
Confidence 988775 5899999999887 455544321100
Q ss_pred cCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeecc-CCeEEeeecCCCCCCcc
Q 001163 735 NFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS-NAVHKLWKWPRNERNST 813 (1134)
Q Consensus 735 ~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~-dg~i~vw~~~~~~~~~~ 813 (1134)
......++.++..+|....++..-. .+.+.+-|....
T Consensus 123 -------------------------------------~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~----- 160 (369)
T PF02239_consen 123 -------------------------------------VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP----- 160 (369)
T ss_dssp -------------------------------------TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS-----
T ss_pred -------------------------------------ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc-----
Confidence 0002356777888888875554444 466655554321
Q ss_pred cccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee--CCeEEEEEccCCeEEEEecC----CCCCe
Q 001163 814 GKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMP----PPPAA 887 (1134)
Q Consensus 814 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~----~~~~v 887 (1134)
.. +....+. .........|+|++++++++. ++.|-++|..+++.+..+.. |....
T Consensus 161 --------------~~--~~~~~i~---~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~ 221 (369)
T PF02239_consen 161 --------------KN--LKVTTIK---VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPG 221 (369)
T ss_dssp --------------SC--EEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTE
T ss_pred --------------cc--cceeeec---ccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccccc
Confidence 00 0000010 234566889999999988775 68899999999988776542 23333
Q ss_pred EEEEEcCC---------CCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEE----eCCCcEEEE
Q 001163 888 TFLAFHPQ---------DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSS----GADSQLCVW 954 (1134)
Q Consensus 888 ~~l~~sp~---------~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~----s~Dg~i~iw 954 (1134)
..+ .+|. .+...++.-....+.+|+..+.+.++++....++ .-+..+|+++++... ...++|.++
T Consensus 222 ~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~vi 299 (369)
T PF02239_consen 222 ANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVI 299 (369)
T ss_dssp EEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEE
T ss_pred ccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEE
Confidence 332 2231 1222222223345667888889999999877666 778889999999988 455889999
Q ss_pred ECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE---eeceEEEEeCCCcccceeec
Q 001163 955 STDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV---HETQIAIYEAPKLECLKQFV 1015 (1134)
Q Consensus 955 d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~---~d~~i~iwd~~~~~~~~~~~ 1015 (1134)
|.++.+. ...+..+.. ..+..+.|++||+++.++ .++.|.|||..+.+.+..+.
T Consensus 300 D~~tl~~----~~~i~~~~~---~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 300 DKKTLKV----VKTITPGPG---KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp ECCGTEE----EE-HHHHHT-----EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ECcCcce----eEEEeccCC---CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 9988531 122211111 237889999999998884 33489999999999887775
No 213
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.61 E-value=1.4e-13 Score=136.12 Aligned_cols=234 Identities=17% Similarity=0.214 Sum_probs=176.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECC-C
Q 001163 418 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV-T 496 (1134)
Q Consensus 418 ~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~-~ 496 (1134)
-.+|+|.+|++|+..+|.+-.+..|.||.....+......++..|...|+.++|+|..+ .|++|+.|...++|... .
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCCC
Confidence 46999999999999999999999999999998886777778999999999999999998 69999999999999983 3
Q ss_pred C--ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCcee----eecCCCCCeeEEEECcCCCEEEEEe
Q 001163 497 G--TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV----DYDAPGHSSTMMAYSADGARLFSCG 570 (1134)
Q Consensus 497 ~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~ 570 (1134)
+ ++...+..+....+++.|+|.. +.+++|+.-+.|.||-++..+.-. ........|.++.|.|++-+|++++
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 3 3344556688899999997766 789999999999999887544321 2334456799999999999999988
Q ss_pred cCCCCCeEEEEEeC-----CC-------------CeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-
Q 001163 571 TNKEGESYLVEWNE-----SE-------------GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN- 631 (1134)
Q Consensus 571 ~~~~~~~~i~~wd~-----~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~- 631 (1134)
.|+ ..+++.. ++ |+++..+. ...+.+..+.|+|+|+.|+-.+.|+.+.+-|.....
T Consensus 166 ~D~----k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~ 240 (361)
T KOG1523|consen 166 TDG----KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE 240 (361)
T ss_pred cCc----ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch
Confidence 654 3455432 11 23333443 233478999999999999999999999999987765
Q ss_pred eeEEEecCCCCCCcceEEEcCCCcEEEEEECC
Q 001163 632 LLASIDADGGLQASPCIRFNKEGILLAVSTND 663 (1134)
Q Consensus 632 ~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d 663 (1134)
.+..+... .-+..++.|-.+.. ++.++.|
T Consensus 241 ~v~~~~~~--~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 241 RVQSVATA--QLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred hccchhhc--cCCceeeEeecCCc-eeecCCC
Confidence 23333221 23455666655443 3344444
No 214
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.61 E-value=8e-13 Score=145.92 Aligned_cols=318 Identities=13% Similarity=0.114 Sum_probs=196.4
Q ss_pred EEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEE
Q 001163 524 IFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGV 603 (1134)
Q Consensus 524 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~ 603 (1134)
+++-..++.|.+.|..+.+....+......-..+.++|||+++++++.+ +.|.++|+.+++.+.++.... ....
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd----g~vsviD~~~~~~v~~i~~G~--~~~~ 82 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRD----GTVSVIDLATGKVVATIKVGG--NPRG 82 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETT----SEEEEEETTSSSEEEEEE-SS--EEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCC----CeEEEEECCcccEEEEEecCC--Ccce
Confidence 3566678999999999888777776654444567899999999998653 469999999999999887654 4678
Q ss_pred EEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCC-----CCCCcceEEEcCCCcEEEEEEC-CCcEEEEEccCCce
Q 001163 604 VQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADG-----GLQASPCIRFNKEGILLAVSTN-DNGIKILANADGIR 676 (1134)
Q Consensus 604 ~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~sp~~~~l~~~~~-dg~i~iw~~~~~~~ 676 (1134)
+++++||++++++. .++.+.++|.++.+++..+...+ ....+..+..+|....++..-. .+.|.+.|..+...
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 99999999999887 78999999999999999886432 2235667777887775554444 47777767654311
Q ss_pred eEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeee
Q 001163 677 LLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKL 756 (1134)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~ 756 (1134)
.......
T Consensus 163 ~~~~~i~------------------------------------------------------------------------- 169 (369)
T PF02239_consen 163 LKVTTIK------------------------------------------------------------------------- 169 (369)
T ss_dssp EEEEEEE-------------------------------------------------------------------------
T ss_pred cceeeec-------------------------------------------------------------------------
Confidence 1110000
Q ss_pred cccCCccceeccccCCccccccEEEEEEecCCceeeee-ccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCccccc
Q 001163 757 TEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILAL-ASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTN 835 (1134)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 835 (1134)
.........|+|++++++++ ..+..+.++|...... +..+..|...
T Consensus 170 ------------------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-------------v~~i~~g~~p-- 216 (369)
T PF02239_consen 170 ------------------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-------------VALIDTGKKP-- 216 (369)
T ss_dssp --------------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-------------EEEEE-SSSB--
T ss_pred ------------------ccccccccccCcccceeeecccccceeEEEeeccceE-------------EEEeeccccc--
Confidence 11233457899999987665 4466788887553211 0111111110
Q ss_pred CCCCCCCCCCeeEE---------EEcCCCCeEEEe-eCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEE--
Q 001163 836 DISDTNPEDAVPCF---------ALSKNDSYVMSA-SGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIG-- 903 (1134)
Q Consensus 836 ~~~~~~h~~~v~~v---------~~s~dg~~la~~-sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-- 903 (1134)
|..+...+ +.+..+...++. +.+.+.+||..+++.++++....++ ..+..+| +++++.+.
T Consensus 217 ------~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~ 288 (369)
T PF02239_consen 217 ------HPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTF 288 (369)
T ss_dssp ------EETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-T
T ss_pred ------cccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeecc
Confidence 22222211 122333333222 3456678999999999999876666 8888899 88888887
Q ss_pred --eCCCcEEEEEcccceEEEeccCcc-CceEEEEEeeCCCEEEEEeCCC--cEEEEECCCCcc
Q 001163 904 --MEDSSIQIYNVRVDEVKTKLKGHQ-KRITGLAFSNTLNVLVSSGADS--QLCVWSTDGWEK 961 (1134)
Q Consensus 904 --~~dg~i~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~s~s~Dg--~i~iwd~~~~~~ 961 (1134)
...++|.++|..+.+.+.++.... ..+..+.|++||+.+..+..++ .|.+||..+.+.
T Consensus 289 ~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 289 LNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp T-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred CCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence 455799999999998888776433 3588999999999877655443 699999999663
No 215
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=3.7e-13 Score=135.11 Aligned_cols=262 Identities=12% Similarity=0.139 Sum_probs=163.9
Q ss_pred ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163 775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 854 (1134)
Q Consensus 775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d 854 (1134)
....|++++|-|.+...++.+--+.|.+|..+....... .++ -..++... .+.+.+| .+|+.+.|.+|
T Consensus 139 sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r-------~~~--~~s~~~~q--vl~~pgh-~pVtsmqwn~d 206 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR-------NIR--MMSTHHLQ--VLQDPGH-NPVTSMQWNED 206 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecceeEEEEcCccccccc-------ccc--cccccchh--heeCCCC-ceeeEEEEcCC
Confidence 346789999999876666666666789998764311000 000 00111111 1222234 78999999999
Q ss_pred CCeEEEee--CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEE
Q 001163 855 DSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITG 932 (1134)
Q Consensus 855 g~~la~~s--dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~ 932 (1134)
|..+++++ +..|.|||.+++..+.......+.++-+.||| |+.+|+.++-|+..++|+.....-.....--.+.|..
T Consensus 207 gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqt 285 (445)
T KOG2139|consen 207 GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQT 285 (445)
T ss_pred CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceee
Confidence 99999998 57899999999888776655678899999999 8999999999999999965433222223334458999
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEECCCCcccc--------cee--------eeecCCCCCCCCCceEEEEcCCCCEEEEEe
Q 001163 933 LAFSNTLNVLVSSGADSQLCVWSTDGWEKQA--------SKF--------LTIPNGRTASALADTRVQFHLDQTHLLAVH 996 (1134)
Q Consensus 933 l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~--------~~~--------~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~ 996 (1134)
.+|+|+|.+|.-++. |.-++|.+.-..... +.. ..+..+.....+++.+++|.|.|.+||+..
T Consensus 286 acWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred eeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 999999987665432 223444433211100 001 111223222346789999999999999953
Q ss_pred ec---------eEEEEeCCCcccceeeccCC-CccCEEEEEEcc---CCCEEEEEecCCcEEEeecC
Q 001163 997 ET---------QIAIYEAPKLECLKQFVPRE-ASGPITHATYSC---DSQSIYVAFEEGSVGVLTAS 1050 (1134)
Q Consensus 997 d~---------~i~iwd~~~~~~~~~~~~~~-h~~~v~~~~~s~---dg~~l~s~s~Dg~i~vwd~~ 1050 (1134)
.+ .|.+||....-.+.-..++- ......-++|+| +|.+|..+=.-|.+.-|++.
T Consensus 365 Kg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 365 KGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 32 35667766443332222110 012244566665 66677666666777777653
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=5.9e-13 Score=133.71 Aligned_cols=287 Identities=15% Similarity=0.190 Sum_probs=189.6
Q ss_pred CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC-CCCEEE
Q 001163 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTLFG 434 (1134)
Q Consensus 356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~la 434 (1134)
+..+..++|++.-- -+|++..|-.|+|||-....... +-......|+|++|-| .++-|+
T Consensus 98 ~~dlr~~aWhqH~~-~fava~nddvVriy~ksst~pt~-------------------Lks~sQrnvtclawRPlsasela 157 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII-AFAVATNDDVVRIYDKSSTCPTK-------------------LKSVSQRNVTCLAWRPLSASELA 157 (445)
T ss_pred hcceeeEeechhhh-hhhhhccCcEEEEeccCCCCCce-------------------ecchhhcceeEEEeccCCcceee
Confidence 34677899999544 35788999999999977632211 1123456899999999 456777
Q ss_pred EEeCCCEEEEEEccCCceee-----------eeeeeecCCCCEEEEEEecCCCceEEEEEeC-CCeEEEEECCCCceeEE
Q 001163 435 VAYSKHIVHLYTYHGGDELR-----------NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-DRVIKVWDAVTGTKQYI 502 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~~-----------~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~ 502 (1134)
.|+..| |+||......... ....-.|| .+|++++|.+||. .+++++. |..|.|||..+|.++..
T Consensus 158 vgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 158 VGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred eeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccc
Confidence 787777 9999865321111 11123355 6899999999999 6788775 56899999999988765
Q ss_pred ecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEE
Q 001163 503 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW 582 (1134)
Q Consensus 503 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 582 (1134)
....-+.+.-+.|+| |+++|++++-|+..++|+....-.........+.|...+|+|+|++|+..... ...++-.
T Consensus 234 ~~~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg---sp~lysl 308 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG---SPRLYSL 308 (445)
T ss_pred cccCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC---CceEEEE
Confidence 544567788889865 45899999999999999655433333333344589999999999988766532 2122211
Q ss_pred --eCCCCe-----------eEEEe------cC--CCCCceEEEEEcCCCCEEEEEeCC--------CeEEEEEcCCCcee
Q 001163 583 --NESEGA-----------VKRTY------HG--LGKRSVGVVQFDTTKNRFLAAGDE--------FMIKFWDMDNVNLL 633 (1134)
Q Consensus 583 --d~~~~~-----------~~~~~------~~--~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~ 633 (1134)
+-+.+. ++..+ .+ .-.+.+.+++|.|.|.++++.-.. +.|.+||.+..-.+
T Consensus 309 ~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v 388 (445)
T KOG2139|consen 309 TFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV 388 (445)
T ss_pred eecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce
Confidence 111110 01111 11 012367789999999999986533 34677887765555
Q ss_pred EEEe--cCCCCCCcceEEEcC---CCcEEEEEECCCcEEEEEcc
Q 001163 634 ASID--ADGGLQASPCIRFNK---EGILLAVSTNDNGIKILANA 672 (1134)
Q Consensus 634 ~~~~--~~~~~~~v~~v~~sp---~~~~l~~~~~dg~i~iw~~~ 672 (1134)
.... ..++. ....++|+| ++.+|..+-..|.+.-|++.
T Consensus 389 els~cg~i~ge-~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 389 ELSYCGMIGGE-YPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEEecccccCC-CCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 4431 11111 245677777 67888888888888877653
No 217
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.8e-13 Score=157.07 Aligned_cols=235 Identities=11% Similarity=0.078 Sum_probs=162.1
Q ss_pred CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCceeEEEecCCCCCCcceEEEcC
Q 001163 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE---FMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (1134)
Q Consensus 576 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 652 (1134)
+..|++||..... .+.+..+.. .+....|+|||+.|+.++.+ ..|++||+.+++........+ ....++|+|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~-~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQ-PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCC-ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECC
Confidence 3569999986554 444555544 78889999999999987743 479999998876543322222 234789999
Q ss_pred CCcEEEEEE-CCCcEEEEEc--cCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCC
Q 001163 653 EGILLAVST-NDNGIKILAN--ADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM 729 (1134)
Q Consensus 653 ~~~~l~~~~-~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 729 (1134)
||+.|+.++ .+|.+.||.+ .++ ....+..
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~--~~~~lt~---------------------------------------------- 289 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGG--TPSQLTS---------------------------------------------- 289 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCC--CeEeecc----------------------------------------------
Confidence 999888765 6787766644 322 1111110
Q ss_pred CCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeec-cCCeEEeeecCCC
Q 001163 730 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA-SNAVHKLWKWPRN 808 (1134)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~-~dg~i~vw~~~~~ 808 (1134)
+...+....|+|||+.++.++ .+|...||+++..
T Consensus 290 ---------------------------------------------~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~ 324 (429)
T PRK01742 290 ---------------------------------------------GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS 324 (429)
T ss_pred ---------------------------------------------CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence 223456789999999877655 4688888876521
Q ss_pred CCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeE
Q 001163 809 ERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAAT 888 (1134)
Q Consensus 809 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~ 888 (1134)
.+.... +. +.. ...+|+|||++|+..+...+.+||+.+++........ ...
T Consensus 325 --------------------~~~~~~--l~---~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~--~~~ 375 (429)
T PRK01742 325 --------------------GGGASL--VG---GRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF--LDE 375 (429)
T ss_pred --------------------CCCeEE--ec---CCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC--CCC
Confidence 111111 11 222 3568999999998887556777999888765433222 345
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEEcc--cceEEEeccCccCceEEEEEeeC
Q 001163 889 FLAFHPQDNNIIAIGMEDSSIQIYNVR--VDEVKTKLKGHQKRITGLAFSNT 938 (1134)
Q Consensus 889 ~l~~sp~~~~~la~g~~dg~i~iwd~~--~~~~~~~l~~h~~~V~~l~~s~d 938 (1134)
.+.|+| ++++|++++.++.+.+|++. +|+.+..+..|.+.+...+|||-
T Consensus 376 ~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 376 SPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CceECC-CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 688999 89999999999999888864 57888889999998999999974
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=2.2e-12 Score=127.90 Aligned_cols=241 Identities=15% Similarity=0.174 Sum_probs=169.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC-----CCeEEEEEC
Q 001163 420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-----DRVIKVWDA 494 (1134)
Q Consensus 420 ~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-----d~~i~iwd~ 494 (1134)
...+++|+.|...+++|..+| .+||+++.-+... ...-+.+.+.-+...-..+.+.|+-|+. -+.|.|||=
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 445599999999999999988 8999987633211 1222222222222222344323333332 247999997
Q ss_pred CCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecC-CCCceeeecCCCC--CeeEEEECcCCCEEEEEec
Q 001163 495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD-NLGSRVDYDAPGH--SSTMMAYSADGARLFSCGT 571 (1134)
Q Consensus 495 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~ 571 (1134)
...+++.++. ...+|.++++.. ..|++.- .+.|.+|.+. +.+....+..... ...+++-..+...|+.-+.
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r----~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRR----DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcC----CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence 7788888886 678899998854 3455444 5889999887 3444444433222 3333333333334444332
Q ss_pred CCCCCeEEEEEeCCCCee--EEEecCCCCCceEEEEEcCCCCEEEEEeCCCe-EEEEEcCCCceeEEEecCCCCCCcceE
Q 001163 572 NKEGESYLVEWNESEGAV--KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM-IKFWDMDNVNLLASIDADGGLQASPCI 648 (1134)
Q Consensus 572 ~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v 648 (1134)
..+.|++-|+...+. ...+..|.. .|.+++.+-+|..++++|..|+ |+|||..+|+++..+........|.++
T Consensus 157 ---k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i 232 (346)
T KOG2111|consen 157 ---KTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI 232 (346)
T ss_pred ---ccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence 346799999877655 466777776 9999999999999999998887 799999999999998765556789999
Q ss_pred EEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 649 RFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 649 ~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
+|||+..+||++++.|++.||.+...
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999998764
No 219
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.59 E-value=1e-11 Score=142.22 Aligned_cols=276 Identities=15% Similarity=0.125 Sum_probs=187.5
Q ss_pred eeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCC--CCEEEEEEcCCCCEEEEE
Q 001163 359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT--ASVNRVMWSPDGTLFGVA 436 (1134)
Q Consensus 359 V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~l~~spd~~~las~ 436 (1134)
+++.++-. +||+|- ..-.|.+||+..+..+... + +...+..|. +.+.+ .+.+++++
T Consensus 10 l~~~~~~~--~~llag--~gp~i~~yd~~s~~li~~~--~-----------~~~~~~~H~~e~~~~l-----~~~~~v~~ 67 (967)
T KOG0974|consen 10 LNLPQLVS--DYLLAG--SGPEILVYDLSSGCLIRHL--I-----------QSKILEVHRGEGKVKL-----LSGKIVTC 67 (967)
T ss_pred ccchhhcc--ceeeec--CCCceEEeeCCchhHhhhh--h-----------hhccccccccccccee-----ccceEEEE
Confidence 33444433 566653 3346999999998876531 1 111233440 01100 23345555
Q ss_pred eCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCE--EEEe
Q 001163 437 YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV--YSIC 514 (1134)
Q Consensus 437 s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v--~~~~ 514 (1134)
..-+.+..=+..-.. +..-.+.|....+..+.+ .++.+..++.+.+||...+..+..+....... .++-
T Consensus 68 ~~~~~v~~~~~~~~~-------~~~~s~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~ 138 (967)
T KOG0974|consen 68 AKSDEVYVKEASNQI-------IERFSDWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLI 138 (967)
T ss_pred Eeecceeecchhhhh-------hhhccccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEE
Confidence 443333332222111 112233444466666677 58888888999999998888777665322111 1122
Q ss_pred ccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEE-Ee
Q 001163 515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR-TY 593 (1134)
Q Consensus 515 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-~~ 593 (1134)
+-...+.-++++|+.-+.|.+|+....+....+.+|.+.+.++.++.||+++++++.|+ .+++|++.+++... +.
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDR----siRlW~i~s~~~~~~~~ 214 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDR----SIRLWPIDSREVLGCTG 214 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCc----ceeeeecccccccCccc
Confidence 22234447899999999999999885555556888999999999999999999999765 49999999998776 55
Q ss_pred cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163 594 HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (1134)
Q Consensus 594 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 673 (1134)
-+|.. .+..++|.|. .++++++|.+.++|+.. ++.+..+..|.. ..+..++..++...+++++.|+.+++|+...
T Consensus 215 fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 215 FGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccccc-eeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 66766 8888999987 99999999999999764 444456665543 3678999999999999999999999999765
Q ss_pred C
Q 001163 674 G 674 (1134)
Q Consensus 674 ~ 674 (1134)
.
T Consensus 290 r 290 (967)
T KOG0974|consen 290 R 290 (967)
T ss_pred c
Confidence 3
No 220
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.58 E-value=4.6e-13 Score=154.52 Aligned_cols=267 Identities=16% Similarity=0.191 Sum_probs=181.7
Q ss_pred ceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEE
Q 001163 347 KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425 (1134)
Q Consensus 347 ~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 425 (1134)
+.++..+. |...|..++.++...-++++||.||+|++||...-..-. ..++ + ...+.-....+.++.
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~r------S-----~ltys~~~sr~~~vt 1105 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSAR------S-----ELTYSPEGSRVEKVT 1105 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceee------e-----eEEEeccCCceEEEE
Confidence 44555555 899999999988774588999999999999986432110 0000 0 001222567999999
Q ss_pred EcCCCCEEEEEeCCCEEEEEEccCC--ceeee--eee--eecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce
Q 001163 426 WSPDGTLFGVAYSKHIVHLYTYHGG--DELRN--HLE--IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK 499 (1134)
Q Consensus 426 ~spd~~~las~s~dg~v~iwd~~~~--~~~~~--~~~--l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~ 499 (1134)
+.+.++.+|+++.||.|++.+++.. +.... ... +..-..-|..-+|....+...++.+..-+.|..||+.....
T Consensus 1106 ~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1106 MCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred eccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence 9999999999999999999998762 11110 001 11222234445665544434678888889999999988776
Q ss_pred eEEec--CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC-CCeeEEEECc---CCCEEEEEecCC
Q 001163 500 QYIFE--GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG-HSSTMMAYSA---DGARLFSCGTNK 573 (1134)
Q Consensus 500 ~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~---~~~~l~~~~~~~ 573 (1134)
..+++ -..+.|++++.++. ++++++|+..|.+.+||++-.........+. .++..+..+| .....++++..
T Consensus 1186 ~w~lk~~~~hG~vTSi~idp~--~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~- 1262 (1431)
T KOG1240|consen 1186 AWRLKNQLRHGLVTSIVIDPW--CNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS- 1262 (1431)
T ss_pred HHhhhcCccccceeEEEecCC--ceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc-
Confidence 66554 24578999998654 4799999999999999999777666554432 3677666655 34566666542
Q ss_pred CCCeEEEEEeCCCCeeEEEecCCCCC------------------ceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001163 574 EGESYLVEWNESEGAVKRTYHGLGKR------------------SVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 629 (1134)
Q Consensus 574 ~~~~~i~~wd~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 629 (1134)
+.+.|.+|++.+|....++...... .....++...+..+++|+.|..|+.||...
T Consensus 1263 -~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1263 -SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred -CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 3556999999999776666443110 112234444567899999999999999743
No 221
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2.7e-13 Score=144.05 Aligned_cols=289 Identities=13% Similarity=0.155 Sum_probs=211.6
Q ss_pred eeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163 348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1134)
Q Consensus 348 ~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (1134)
++++.|++...-+.|..||||+|++|+|..--.|++||+.+-.+...+. -....|.-.-.|
T Consensus 43 eLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh-------------------lDae~V~feiLs 103 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH-------------------LDAEVVDFEILS 103 (703)
T ss_pred HHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec-------------------ccccceeEEEec
Confidence 4567788999999999999999999999999999999998755432111 012345555566
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCC
Q 001163 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 507 (1134)
Q Consensus 428 pd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~ 507 (1134)
.|-..++.-..|.+|.+..-. |..... .+. ..-..++++.-... |+.++....|+-.+++.|+.+..|....
T Consensus 104 DD~SK~v~L~~DR~IefHak~-G~hy~~--RIP---~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~ 175 (703)
T KOG2321|consen 104 DDYSKSVFLQNDRTIEFHAKY-GRHYRT--RIP---KFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDS 175 (703)
T ss_pred cchhhheEeecCceeeehhhc-Ceeeee--ecC---cCCccccccCCCcc--EEEeecCcceEEEEcccccccccccccc
Confidence 676677777778777665432 211110 111 11234555544443 4555555678999999999999998888
Q ss_pred cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCC------CC-----CeeEEEECcCCCEEEEEecCCCCC
Q 001163 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP------GH-----SSTMMAYSADGARLFSCGTNKEGE 576 (1134)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------~~-----~v~~~~~s~~~~~l~~~~~~~~~~ 576 (1134)
+.++++.+++.. .+|++|+.+|.|.+||.+.......+... .+ .|+++.|+.+|-.+++|...
T Consensus 176 ~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~---- 249 (703)
T KOG2321|consen 176 GELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST---- 249 (703)
T ss_pred ccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccC----
Confidence 999999887655 68999999999999998876554443221 11 58999999999999998754
Q ss_pred eEEEEEeCCCCeeEEEecCCCCCceEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCC
Q 001163 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT--KNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654 (1134)
Q Consensus 577 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 654 (1134)
+.+.+||+++.+++..-.....-+|..+.|.+. ++.+++. +...++|||-.+|+....+.. ...++.+++-|++
T Consensus 250 G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~s 325 (703)
T KOG2321|consen 250 GSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGS 325 (703)
T ss_pred CcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc---cCCcCceeeecCC
Confidence 459999999998877655544557888888765 3445544 457899999999999998865 3458999999999
Q ss_pred cEEEEEECCCcEEEEEccC
Q 001163 655 ILLAVSTNDNGIKILANAD 673 (1134)
Q Consensus 655 ~~l~~~~~dg~i~iw~~~~ 673 (1134)
.+++++-+++.+..|-+..
T Consensus 326 Gm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 326 GMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ceEEEecCCCcceeEEccc
Confidence 9999999998888776654
No 222
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.57 E-value=1.9e-10 Score=119.86 Aligned_cols=145 Identities=12% Similarity=0.038 Sum_probs=109.1
Q ss_pred ccccEEEEEEecCCceeeeeccCC-eEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcC
Q 001163 775 TAMRVSRLIYTNSGLAILALASNA-VHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK 853 (1134)
Q Consensus 775 ~~~~i~~l~~spdg~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~ 853 (1134)
+...|.-..+.-+++.++.+..|| .+-||+.. +++..... ..-+.|.++..++
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~----------------------~~e~kr~e----~~lg~I~av~vs~ 411 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD----------------------GGEVKRIE----KDLGNIEAVKVSP 411 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecC----------------------CceEEEee----CCccceEEEEEcC
Confidence 444566666777777788888888 77777544 44333221 1457899999999
Q ss_pred CCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC----cEEEEEcccceEEEeccCccC
Q 001163 854 NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDS----SIQIYNVRVDEVKTKLKGHQK 928 (1134)
Q Consensus 854 dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg----~i~iwd~~~~~~~~~l~~h~~ 928 (1134)
||++++++. ...|.+.|++++.....-+...+-|+.++|+| +++++|.+--+| .|+++|+.+++....-. ..+
T Consensus 412 dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta 489 (668)
T COG4946 412 DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTA 489 (668)
T ss_pred CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccc
Confidence 999999998 47899999999987766666778899999999 999999988776 79999999888654322 223
Q ss_pred ceEEEEEeeCCCEEEEEeC
Q 001163 929 RITGLAFSNTLNVLVSSGA 947 (1134)
Q Consensus 929 ~V~~l~~s~d~~~l~s~s~ 947 (1134)
.=.+-+|.||+++|.--+.
T Consensus 490 ~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 490 YDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred cccCcccCCCCcEEEEEec
Confidence 3346689999999886553
No 223
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.57 E-value=1e-08 Score=125.98 Aligned_cols=534 Identities=11% Similarity=0.104 Sum_probs=300.1
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCEEEEE----EccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEE
Q 001163 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLY----TYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (1134)
Q Consensus 416 ~h~~~V~~l~~spd~~~las~s~dg~v~iw----d~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i 491 (1134)
...+.|.++.|-++...++.+..+|.|.+. +..+.. +. ....-+..|.+++||||+. +|+....++++.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~ 146 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLL 146 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence 345799999999999999999999999999 544433 22 2334567899999999999 5666666777776
Q ss_pred EECCCCceeE------------------------EecC------------------------CCcCEEEEeccccCCccE
Q 001163 492 WDAVTGTKQY------------------------IFEG------------------------HESPVYSICPHHKENIQF 523 (1134)
Q Consensus 492 wd~~~~~~~~------------------------~~~~------------------------h~~~v~~~~~~~~~~~~~ 523 (1134)
-+ .+...+. .|.| +...-..| ++.+||.+
T Consensus 147 mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~I--SWRGDG~y 223 (928)
T PF04762_consen 147 MT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRI--SWRGDGEY 223 (928)
T ss_pred Ee-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEE--EECCCCcE
Confidence 54 2211111 1111 11122234 44788899
Q ss_pred EEEecC---C---CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecC--
Q 001163 524 IFSTAT---D---GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG-- 595 (1134)
Q Consensus 524 l~s~s~---d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~-- 595 (1134)
+++.+. . +.+|||+-+ +.....-+...+--.+++|.|.|+++++... ......|.+|. ++|-....|..
T Consensus 224 FAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfE-rNGLrhgeF~l~~ 300 (928)
T PF04762_consen 224 FAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFE-RNGLRHGEFTLRF 300 (928)
T ss_pred EEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEe-cCCcEeeeEecCC
Confidence 988764 2 569999865 3322222222333457899999999999875 23345566666 44544444433
Q ss_pred -CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEE--EecCCCCCCcceEEEcCC-CcEEEEEECCCcEEEEEc
Q 001163 596 -LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLAS--IDADGGLQASPCIRFNKE-GILLAVSTNDNGIKILAN 671 (1134)
Q Consensus 596 -~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~v~~v~~sp~-~~~l~~~~~dg~i~iw~~ 671 (1134)
.....+..+.|++|+..|+..-.|. |.+|...+...-.+ +.... ...+..+.|+|. ...|...+.+|.+..++.
T Consensus 301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~-~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 301 DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS-SESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC-CCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 2344789999999999999987655 99999887764332 22211 234556999994 456777777788877664
Q ss_pred cCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccccccc
Q 001163 672 ADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS 751 (1134)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 751 (1134)
.-. ...+.... ++....+..-...++
T Consensus 379 ~~~-----v~~s~~~~-------------------------------------------------~~D~g~vaVIDG~~l 404 (928)
T PF04762_consen 379 AWD-----VSRSPGSS-------------------------------------------------PNDNGTVAVIDGNKL 404 (928)
T ss_pred EEE-----EEecCCCC-------------------------------------------------ccCceEEEEEeCCeE
Confidence 321 11010000 000001111111234
Q ss_pred ceeeecccCCccce--eccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCC
Q 001163 752 RIWKLTEITEPSQC--RSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPS 829 (1134)
Q Consensus 752 ~iw~~~~~~~~~~~--~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~ 829 (1134)
.+-.+.....+... ..+. -...|..++|++++..+++...||.+.+|.++............. .....
T Consensus 405 llTpf~~a~VPPPMs~~~l~-----~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~-----~~~~~ 474 (928)
T PF04762_consen 405 LLTPFRRAVVPPPMSSYELE-----LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLL-----SSISL 474 (928)
T ss_pred EEecccccCCCchHhceEEc-----CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchh-----hhccc
Confidence 44333332222222 2222 246899999999999899999999999998765422110000000 00000
Q ss_pred CcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-C---CeEEEEEccCCe---EEEEecCCCCCeEEEEEcCCCCcEEEE
Q 001163 830 GILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFK---TMTTFMPPPPAATFLAFHPQDNNIIAI 902 (1134)
Q Consensus 830 ~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-d---g~i~lwd~~~~~---~~~~~~~~~~~v~~l~~sp~~~~~la~ 902 (1134)
......... .....+..++|..+..+++... + ..+.+++....+ .+.......+.+..+...+ +...++.
T Consensus 475 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 551 (928)
T PF04762_consen 475 DSMDISDSE--LPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYI 551 (928)
T ss_pred ccccccccc--cccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEE
Confidence 000000000 1345678889988887777665 3 458888874332 3333333445565666665 4445777
Q ss_pred EeCCCcEEEEEcccceE-EEeccCccCceEEEEEeeCCC---EEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCC
Q 001163 903 GMEDSSIQIYNVRVDEV-KTKLKGHQKRITGLAFSNTLN---VLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASAL 978 (1134)
Q Consensus 903 g~~dg~i~iwd~~~~~~-~~~l~~h~~~V~~l~~s~d~~---~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 978 (1134)
-..+|.+...+...... +..|..-...+ .+....+.. .++.-+..|.+++ .. . .+. .
T Consensus 552 q~~~G~v~~~~~~~~~~~~~~fp~~c~~~-~~~~~~~~~~~~~~~GLs~~~~Ly~---n~-~-----~la---------~ 612 (928)
T PF04762_consen 552 QTNDGKVFQLSSDGELSQIVKFPQPCPWM-EVCQINGSEDKRVLFGLSSNGRLYA---NS-R-----LLA---------S 612 (928)
T ss_pred EECCCEEEEeecCCCccccccCCCCCcEE-EEEEECCccceeEEEEECCCCEEEE---CC-E-----EEe---------c
Confidence 77899888666554321 22333222222 222222322 4444455554443 11 1 111 2
Q ss_pred CceEEEEcCCCCEEE-EEeeceEEEEeCCC-cccceeeccCC----CccCEEEEEEccCCCEEEEEecCCcEEEeecCCC
Q 001163 979 ADTRVQFHLDQTHLL-AVHETQIAIYEAPK-LECLKQFVPRE----ASGPITHATYSCDSQSIYVAFEEGSVGVLTASTL 1052 (1134)
Q Consensus 979 ~v~~l~fs~dg~~l~-~~~d~~i~iwd~~~-~~~~~~~~~~~----h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~ 1052 (1134)
.+++.++. +.+|+ +.....+++.++.. .+.+.... .. +...+ .--..|..|+++-...+=.|..+..|
T Consensus 613 ~~tSF~v~--~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~-~~~~~~~de~~---R~VERGsriVt~vp~~~~vVLQmPRG 686 (928)
T PF04762_consen 613 NCTSFAVT--DSFLLFTTTQHTLKFVHLNSSVEDLEIPP-DSPENSYDERC---RRVERGSRIVTAVPSDTSVVLQMPRG 686 (928)
T ss_pred CCceEEEE--cCEEEEEecCceEEEEECcCchhhccccc-Ccccccccccc---ccCccCCEEEEEeCCCceEEEEcCCC
Confidence 35666663 34444 46778899999881 11111111 01 11122 23357888888877667777888888
Q ss_pred cce
Q 001163 1053 RLR 1055 (1134)
Q Consensus 1053 ~~~ 1055 (1134)
.+.
T Consensus 687 NLE 689 (928)
T PF04762_consen 687 NLE 689 (928)
T ss_pred chh
Confidence 763
No 224
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.56 E-value=1.9e-14 Score=148.89 Aligned_cols=288 Identities=15% Similarity=0.158 Sum_probs=221.7
Q ss_pred CCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001163 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 436 (1134)
Q Consensus 357 ~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~ 436 (1134)
.+-..+.|+.+|++| +.|+.-|.|..+|+.++++.... .-...|.++.|-.+.+++|++
T Consensus 130 FGPY~~~ytrnGrhl-llgGrKGHlAa~Dw~t~~L~~Ei--------------------~v~Etv~Dv~~LHneq~~AVA 188 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHL-LLGGRKGHLAAFDWVTKKLHFEI--------------------NVMETVRDVTFLHNEQFFAVA 188 (545)
T ss_pred cCCeeeeecCCccEE-EecCCccceeeeecccceeeeee--------------------ehhhhhhhhhhhcchHHHHhh
Confidence 345689999999976 57788899999999999876542 134578899999999999998
Q ss_pred eCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEecc
Q 001163 437 YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPH 516 (1134)
Q Consensus 437 s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 516 (1134)
-. ..+.|||-.. ..+.+ +..| ..|..+.|.|--- +|++++..|.++.-|+.+|+.+..+..-.+.+..++-+
T Consensus 189 QK-~y~yvYD~~G-tElHC---lk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 189 QK-KYVYVYDNNG-TELHC---LKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN 260 (545)
T ss_pred hh-ceEEEecCCC-cEEee---hhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence 54 4599999654 44553 4434 4589999999876 89999999999999999999999998888888888876
Q ss_pred ccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCC
Q 001163 517 HKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 596 (1134)
Q Consensus 517 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 596 (1134)
|.+ ..+-+|..+|+|.+|.....+....+..|.++|.++++.++|+++++.+.|. .+.|||++....+.++...
T Consensus 261 P~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr----~~kIWDlR~~~ql~t~~tp 334 (545)
T KOG1272|consen 261 PYN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDR----KVKIWDLRNFYQLHTYRTP 334 (545)
T ss_pred Ccc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccccc----ceeEeeeccccccceeecC
Confidence 654 6888999999999999999999999999999999999999999999998755 5999999998877766652
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEE-cCCCc--eeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163 597 GKRSVGVVQFDTTKNRFLAAGDEFMIKFWD-MDNVN--LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (1134)
Q Consensus 597 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~--~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 673 (1134)
. ....+++|..| +++.+....|.||. .-.+. .-..+-.|.....|..+.|.|-...|..|...|.-.+.-...
T Consensus 335 ~--~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGs 410 (545)
T KOG1272|consen 335 H--PASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGS 410 (545)
T ss_pred C--Ccccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCC
Confidence 2 56667887655 45555556899994 33322 112222233345889999999888888888877766665555
Q ss_pred CceeEEEecc
Q 001163 674 GIRLLRTVES 683 (1134)
Q Consensus 674 ~~~~~~~~~~ 683 (1134)
|..-...+..
T Consensus 411 GePN~Ds~e~ 420 (545)
T KOG1272|consen 411 GEPNYDSLED 420 (545)
T ss_pred CCCCcchhcc
Confidence 5444444443
No 225
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.55 E-value=6.2e-10 Score=116.08 Aligned_cols=519 Identities=13% Similarity=0.117 Sum_probs=278.5
Q ss_pred ceeEEEeecCCCeeEEEEcCCCCeEEEE------EeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCC
Q 001163 347 KTVVMTLNQGSAVKSMDFHPVQQILLVV------GTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS 420 (1134)
Q Consensus 347 ~~~~~~~~h~~~V~~v~fsp~g~~lla~------gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 420 (1134)
.+..+...+-+-|+...|+|+|+.++.+ +...+.+.+.+.+.|+..+.. .+ | ..
T Consensus 69 g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiT-----------------yf-G--r~ 128 (668)
T COG4946 69 GKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRIT-----------------YF-G--RR 128 (668)
T ss_pred CCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEE-----------------Ee-c--cc
Confidence 3445555688899999999999987552 223346788888888765421 12 2 22
Q ss_pred EE-EEEEcCCCCEEEEEeCCCEE----EEEEccCCce-eeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCC-------
Q 001163 421 VN-RVMWSPDGTLFGVAYSKHIV----HLYTYHGGDE-LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR------- 487 (1134)
Q Consensus 421 V~-~l~~spd~~~las~s~dg~v----~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~------- 487 (1134)
-+ -.-|+|||+.+++...-.-. .+|.+..... .. .| .-++.+.+.+- ||. ++.|-..-
T Consensus 129 fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e---~L--nlGpathiv~~-dg~---ivigRntydLP~WK~ 199 (668)
T COG4946 129 FTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE---PL--NLGPATHIVIK-DGI---IVIGRNTYDLPHWKG 199 (668)
T ss_pred cceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee---ec--cCCceeeEEEe-CCE---EEEccCcccCccccc
Confidence 33 35599999999887543222 2333332111 11 11 22344555443 342 33322111
Q ss_pred -----eEEEEECCCCc-e---eEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEE
Q 001163 488 -----VIKVWDAVTGT-K---QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA 558 (1134)
Q Consensus 488 -----~i~iwd~~~~~-~---~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 558 (1134)
.=++|--..+. . .-.+.+| |++-.+. .+ ...+....||.=.+|..+-.+.-......-..-.+-.
T Consensus 200 YkGGtrGklWis~d~g~tFeK~vdl~~~---vS~PmIV--~~-RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~ 273 (668)
T COG4946 200 YKGGTRGKLWISSDGGKTFEKFVDLDGN---VSSPMIV--GE-RVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRN 273 (668)
T ss_pred ccCCccceEEEEecCCcceeeeeecCCC---cCCceEE--cc-eEEEEecccCccceEEeccCCchhhhcCCchhccccc
Confidence 11344322221 2 2233333 2221110 11 2333344455544554432222111110111233334
Q ss_pred ECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecC---C--CCCc--eEE---E-EEcC-CCCEEEEEeCCCeEEEEE
Q 001163 559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG---L--GKRS--VGV---V-QFDT-TKNRFLAAGDEFMIKFWD 626 (1134)
Q Consensus 559 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~--~~~~--v~~---~-~~~~-~~~~l~~~~~dg~i~iwd 626 (1134)
.+.||+.++.... + -|+++|..+.+....--+ . .... +.- + .|++ +|.+++..|. |...|.+
T Consensus 274 ~nsDGkrIvFq~~-G----dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~ 347 (668)
T COG4946 274 ANSDGKRIVFQNA-G----DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMR 347 (668)
T ss_pred cCCCCcEEEEecC-C----cEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEEC
Confidence 5779998887532 2 299999987654332111 1 0000 110 1 1222 4677777775 6677776
Q ss_pred cCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC-cEEEEEccCCceeEEEeccCcccccccchhhhhcccccccc
Q 001163 627 MDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN-GIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTF 705 (1134)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1134)
.-.+-.++. ++...|.-..+..+++-++.|..|| .+-|++..++. ++.+..
T Consensus 348 ~~~~~~iqv----~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--~kr~e~---------------------- 399 (668)
T COG4946 348 PWDGYSIQV----GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--VKRIEK---------------------- 399 (668)
T ss_pred CCCCeeEEc----CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce--EEEeeC----------------------
Confidence 655554443 2244577777777888889999998 89999987762 111111
Q ss_pred cccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEe
Q 001163 706 GSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYT 785 (1134)
Q Consensus 706 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 785 (1134)
.-+.|.++..+
T Consensus 400 ---------------------------------------------------------------------~lg~I~av~vs 410 (668)
T COG4946 400 ---------------------------------------------------------------------DLGNIEAVKVS 410 (668)
T ss_pred ---------------------------------------------------------------------CccceEEEEEc
Confidence 34678899999
Q ss_pred cCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CC
Q 001163 786 NSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GG 864 (1134)
Q Consensus 786 pdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg 864 (1134)
++|+.++++.....+.+.|+ .+|....++-. ..+-|+.++|+|+++++|-+- +|
T Consensus 411 ~dGK~~vvaNdr~el~vidi----------------------dngnv~~idkS---~~~lItdf~~~~nsr~iAYafP~g 465 (668)
T COG4946 411 PDGKKVVVANDRFELWVIDI----------------------DNGNVRLIDKS---EYGLITDFDWHPNSRWIAYAFPEG 465 (668)
T ss_pred CCCcEEEEEcCceEEEEEEe----------------------cCCCeeEeccc---ccceeEEEEEcCCceeEEEecCcc
Confidence 99999999888777776654 44444433322 467799999999999999986 54
Q ss_pred ----eEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEe--ccCccCceEEEE----
Q 001163 865 ----KISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK--LKGHQKRITGLA---- 934 (1134)
Q Consensus 865 ----~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~--l~~h~~~V~~l~---- 934 (1134)
.|+++|+.+++...... ..+.-.+-+|.| ++++|..-+.- -.|..+.+.+.. +..|..+...+-
T Consensus 466 y~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~-d~ryLYfLs~R----sLdPs~Drv~fnf~f~~vskPylv~L~~g~ 539 (668)
T COG4946 466 YYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDP-DGRYLYFLSAR----SLDPSNDRVIFNFSFQRVSKPYLVVLGRGY 539 (668)
T ss_pred eeeeeEEEEecCCCeEEEecC-CcccccCcccCC-CCcEEEEEecc----ccCCCCCeeEEEEEEeeeccceEEEecCCC
Confidence 59999998887665543 455566788999 88888765421 122222222211 112222211110
Q ss_pred EeeCCCEEEE-EeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-------------E--eec
Q 001163 935 FSNTLNVLVS-SGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-------------V--HET 998 (1134)
Q Consensus 935 ~s~d~~~l~s-~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-------------~--~d~ 998 (1134)
.||-.+..-. -+.++.+-+=++.. ....+.+.++. -.+++=-.+|+.+.. + .-|
T Consensus 540 ~sP~~q~p~~~~~ea~e~dle~ie~----r~eP~pVee~d------Y~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG 609 (668)
T COG4946 540 YSPFNQPPDEANSEAGEVDLEGIED----RVEPFPVEEGD------YRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKG 609 (668)
T ss_pred CChhhcCchhcCccccceehhhhcc----cccccccCccc------eeEeeecCCCeEEEEEeeccchhhhhhcCCCccc
Confidence 1111111111 12223222222211 11122222221 122222223322211 2 347
Q ss_pred eEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCC
Q 001163 999 QIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAST 1051 (1134)
Q Consensus 999 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~ 1051 (1134)
.+.+||+++.+... + ...++++..|+||+.+.. -.||.+++++++.
T Consensus 610 ~l~~ydletkk~~e-~-----k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 610 RLEKYDLETKKVEE-Y-----KDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred eEEEEecchhhHHH-H-----hcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 78899998765421 1 467899999999999887 7899999999976
No 226
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.55 E-value=1.1e-12 Score=129.98 Aligned_cols=241 Identities=12% Similarity=0.141 Sum_probs=168.2
Q ss_pred CeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCC--eEEEEEcCCCCcEEE-EEeCC------CcEEEEEcc
Q 001163 845 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPA--ATFLAFHPQDNNIIA-IGMED------SSIQIYNVR 915 (1134)
Q Consensus 845 ~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~--v~~l~~sp~~~~~la-~g~~d------g~i~iwd~~ 915 (1134)
....++|+.|...++++.|...+||+++-.+.....+.+.+. +..+-|- .++|| +|+.+ ..|.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEecc
Confidence 345699999999999999988999998764433332222222 3333332 23444 44433 379999966
Q ss_pred cceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-
Q 001163 916 VDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA- 994 (1134)
Q Consensus 916 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~- 994 (1134)
..+++.++. ...+|.++.++++ .++..- .+.|+||.+...-.+ ...+...... .++.+++=.....+||.
T Consensus 84 k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~-l~~~et~~NP----kGlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 84 KERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKL-LHVIETRSNP----KGLCSLCPTSNKSLLAFP 154 (346)
T ss_pred cCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhh-eeeeecccCC----CceEeecCCCCceEEEcC
Confidence 677777776 6788999999865 455544 567999999853321 1222222211 12333333334445555
Q ss_pred E-eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCc-EEEeecCCCcceeecCCCcccCCCCCCCc
Q 001163 995 V-HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGS-VGVLTASTLRLRCRINPTAYLPTNPSLRV 1072 (1134)
Q Consensus 995 ~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~h~~~v 1072 (1134)
| .-|+|+|-|+...+.-......+|.+.|.+++++-+|.++||+|..|+ |||||..+|+.+..+..+. ....|
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-----d~A~i 229 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-----DRADI 229 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-----chheE
Confidence 5 559999999987766333334489999999999999999999999998 8999999999998887553 23456
Q ss_pred eeEEEEecCCCCCEEEEEecCCcEEEEeCCCCC
Q 001163 1073 YPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus 1073 ~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
+.+ +|+| +..+|++.|+.|+|+|+.+....
T Consensus 230 y~i--aFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 230 YCI--AFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EEE--EeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 666 8899 79999999999999999997755
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=3.5e-12 Score=145.95 Aligned_cols=237 Identities=12% Similarity=0.113 Sum_probs=156.8
Q ss_pred cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeC---CCEEEEEEccCCceeeee
Q 001163 380 DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS---KHIVHLYTYHGGDELRNH 456 (1134)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~---dg~v~iwd~~~~~~~~~~ 456 (1134)
.|.+||.+...... +..+...+.+.+|||||+.||..+. +..|.+||+.+++.. .
T Consensus 180 ~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~- 237 (429)
T PRK03629 180 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-Q- 237 (429)
T ss_pred eEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-E-
Confidence 68888887654322 3446678999999999999997643 457999999887632 2
Q ss_pred eeeecCCCCEEEEEEecCCCceEEEEEeCCC--eEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecC-CCcE
Q 001163 457 LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-DGKI 533 (1134)
Q Consensus 457 ~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i 533 (1134)
+....+.+..++|+|||+. ++++.+.++ .|.+||+.+++..... .+...+....|++ ||+.|+..+. ++..
T Consensus 238 --l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSP--DG~~I~f~s~~~g~~ 311 (429)
T PRK03629 238 --VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFP--DSQNLAYTSDQAGRP 311 (429)
T ss_pred --ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECC--CCCEEEEEeCCCCCc
Confidence 2223333556899999995 233434444 5899999888765443 3445566777755 5576765554 4555
Q ss_pred EEE--ecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCC
Q 001163 534 KAW--LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN 611 (1134)
Q Consensus 534 ~vw--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 611 (1134)
.+| |+..+.. ..+...........|+|||++++..+.+. +...|.+||+.+++........ ......|+|||+
T Consensus 312 ~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~~~~Lt~~~---~~~~p~~SpDG~ 386 (429)
T PRK03629 312 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQVLTDTF---LDETPSIAPNGT 386 (429)
T ss_pred eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCCeEEeCCCC---CCCCceECCCCC
Confidence 555 5544332 33333444566789999999998876543 3456999999888654332221 234578999999
Q ss_pred EEEEEeCCCe---EEEEEcCCCceeEEEecCCCCCCcceEEEcC
Q 001163 612 RFLAAGDEFM---IKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (1134)
Q Consensus 612 ~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 652 (1134)
.|+..+.++. ++++++. |.....+..+ ...+...+|+|
T Consensus 387 ~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~--~~~~~~p~Wsp 427 (429)
T PRK03629 387 MVIYSSSQGMGSVLNLVSTD-GRFKARLPAT--DGQVKFPAWSP 427 (429)
T ss_pred EEEEEEcCCCceEEEEEECC-CCCeEECccC--CCCcCCcccCC
Confidence 9999886654 6777874 5555556543 44677888887
No 228
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=5.2e-12 Score=137.20 Aligned_cols=518 Identities=12% Similarity=0.107 Sum_probs=306.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCce------------eeeeeeeecCCCCEEEEEEecCCCceEEEEEe
Q 001163 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDE------------LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG 484 (1134)
Q Consensus 417 h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~------------~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s 484 (1134)
......|++|+....|+|+|+.||.++|..+.+... +..-.++.||.+.|.-+.|+.+.+ .|-|..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 446788999999999999999999999998865321 111235789999999999998887 688999
Q ss_pred CCCeEEEEECCCCceeEEec--CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcC
Q 001163 485 EDRVIKVWDAVTGTKQYIFE--GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD 562 (1134)
Q Consensus 485 ~d~~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~ 562 (1134)
.+|.|.+|-+-.|.-...+. ...+-|.+++|+ .+|..+.....||.|.+=.++ +..+.-....+.....+.|++|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn--~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWN--LDGTKICIVYEDGAVIVGSVD-GNRIWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEc--CCCcEEEEEEccCCEEEEeec-cceecchhcchheccceeeccc
Confidence 99999999988886554332 345668888884 566889999999998776655 2333333333445567889999
Q ss_pred CCEEEEEecCCCCCeEEEEEeCCCC-------eeEEEecCC---CCCceEEEEE--------cCCCCEEEEEeCCCeEEE
Q 001163 563 GARLFSCGTNKEGESYLVEWNESEG-------AVKRTYHGL---GKRSVGVVQF--------DTTKNRFLAAGDEFMIKF 624 (1134)
Q Consensus 563 ~~~l~~~~~~~~~~~~i~~wd~~~~-------~~~~~~~~~---~~~~v~~~~~--------~~~~~~l~~~~~dg~i~i 624 (1134)
.+.++.+-.+ +..+++|.+.. .+.....+. ....+..+.| -|+...++.+-.+|.+.|
T Consensus 168 ~~~~Lf~~an----ge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 168 LEQALFKKAN----GETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred HHHHHhhhcC----CcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 9888776543 34888886532 111111110 0112334444 357789999999999998
Q ss_pred EEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccccccc
Q 001163 625 WDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGT 704 (1134)
Q Consensus 625 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1134)
-.-.+......+.. ...+....|+++|..|++++.+..--- +..+.
T Consensus 244 MR~eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~~da~~-~~d~n------------------------------ 289 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGNDSDADE-PTDSN------------------------------ 289 (1189)
T ss_pred hhhcCCCCCeEEec---ccEeecceecCCCcEEEEccCcccccC-ccccc------------------------------
Confidence 76555443333332 235778999999999999887632100 00000
Q ss_pred ccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEE
Q 001163 705 FGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIY 784 (1134)
Q Consensus 705 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 784 (1134)
.|.++..- .....++.. ....|+++.|
T Consensus 290 ---------------------------------------------~v~Fysp~----G~i~gtlkv----pg~~It~lsW 316 (1189)
T KOG2041|consen 290 ---------------------------------------------KVHFYSPY----GHIVGTLKV----PGSCITGLSW 316 (1189)
T ss_pred ---------------------------------------------eEEEeccc----hhheEEEec----CCceeeeeEE
Confidence 00000000 000111111 2355666666
Q ss_pred ecCCceeeeeccCCeEEeeecCCC----------CCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163 785 TNSGLAILALASNAVHKLWKWPRN----------ERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 854 (1134)
Q Consensus 785 spdg~~l~~~~~dg~i~vw~~~~~----------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d 854 (1134)
-..|-.++.+- |+.|.+=++... .+.-.+.......+.+||..+.+..... -....+++++.+
T Consensus 317 Eg~gLriA~Av-dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~------V~~~~~~a~~~e 389 (1189)
T KOG2041|consen 317 EGTGLRIAIAV-DSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKT------VTHFENMAFYRE 389 (1189)
T ss_pred cCCceEEEEEe-cceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhh------hcceeehheecc
Confidence 66665544333 334433222211 0000111122224567787776544332 233456777766
Q ss_pred CCeEEEee-CCeEEEEEc-cCCeEEEEec-----C--CCC---CeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceE---
Q 001163 855 DSYVMSAS-GGKISLFNM-MTFKTMTTFM-----P--PPP---AATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV--- 919 (1134)
Q Consensus 855 g~~la~~s-dg~i~lwd~-~~~~~~~~~~-----~--~~~---~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~--- 919 (1134)
--.|+.-. ++.|.-++. ++...+..+. + -+. .|.-.-..- ++..++.++.+ .+.+|.....+.
T Consensus 390 hCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~e-~~~iWhy~~pK~~s~ 467 (1189)
T KOG2041|consen 390 HCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASEE-RYFIWHYVLPKFNSV 467 (1189)
T ss_pred cEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEeccc-cEEEEEEeccchhhh
Confidence 65666555 566655422 1211111110 0 011 111111111 55677777766 578887532110
Q ss_pred -----------------------------EEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeec
Q 001163 920 -----------------------------KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIP 970 (1134)
Q Consensus 920 -----------------------------~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~ 970 (1134)
..++.|-.++|.+++.| .++|..+-..|.|.-+++...... +..
T Consensus 468 l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~-----n~y 540 (1189)
T KOG2041|consen 468 LAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLT-----NSY 540 (1189)
T ss_pred hhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeee-----ecc
Confidence 13344566788888876 578888989999999999874321 111
Q ss_pred CCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCC---CcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEE
Q 001163 971 NGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAP---KLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGV 1046 (1134)
Q Consensus 971 ~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~---~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~v 1046 (1134)
.- ...+.++++.-....+++ -.-|.+.+.|+. +|..+..+.. .....|+.+.|..|+..|++--+...+.|
T Consensus 541 ~~----n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~-~errDVWd~~Wa~dNp~llAlmeKtrmyi 615 (1189)
T KOG2041|consen 541 PV----NPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYT-SERRDVWDYEWAQDNPNLLALMEKTRMYI 615 (1189)
T ss_pred cc----CchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeeh-hhhhhhhhhhhccCCchHHhhhhhceEEE
Confidence 11 134777888777777777 456778888776 3444443332 23568899999888887776666666777
Q ss_pred eecCC
Q 001163 1047 LTAST 1051 (1134)
Q Consensus 1047 wd~~~ 1051 (1134)
++-.+
T Consensus 616 frgnd 620 (1189)
T KOG2041|consen 616 FRGND 620 (1189)
T ss_pred ecCcC
Confidence 77443
No 229
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.53 E-value=6.5e-13 Score=140.19 Aligned_cols=118 Identities=24% Similarity=0.401 Sum_probs=106.1
Q ss_pred CCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEE
Q 001163 843 EDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKT 921 (1134)
Q Consensus 843 ~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~ 921 (1134)
.+.|...+|+|||++||+.+ ||.+||||..+.+++..++.-.+...|++||| ||++|++|++|.-|.||.+..++++.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence 45788999999999999999 99999999999998888887789999999999 99999999999999999999999999
Q ss_pred eccCccCceEEEEEee-------------------------------C-----------------CCEEEEEeCCCcEEE
Q 001163 922 KLKGHQKRITGLAFSN-------------------------------T-----------------LNVLVSSGADSQLCV 953 (1134)
Q Consensus 922 ~l~~h~~~V~~l~~s~-------------------------------d-----------------~~~l~s~s~Dg~i~i 953 (1134)
.=++|.+-|..|+|.| + .-++.|.+.|.++.+
T Consensus 369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL 448 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL 448 (636)
T ss_pred eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEE
Confidence 9999999999999972 0 124778899999999
Q ss_pred EECCCCcc
Q 001163 954 WSTDGWEK 961 (1134)
Q Consensus 954 wd~~~~~~ 961 (1134)
||+.....
T Consensus 449 WDlteD~L 456 (636)
T KOG2394|consen 449 WDLTEDVL 456 (636)
T ss_pred Eecchhhc
Confidence 99987553
No 230
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.8e-13 Score=144.27 Aligned_cols=239 Identities=12% Similarity=0.190 Sum_probs=164.9
Q ss_pred ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC--CCC
Q 001163 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGT 431 (1134)
Q Consensus 354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~ 431 (1134)
+|.+-|+|++|+.||. +|++||.|-.+.|||.-..+.++. +-+||...|.|+.|-| +.+
T Consensus 48 GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tnnr 108 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTNNR 108 (758)
T ss_pred cccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCCCe
Confidence 4999999999999999 779999999999999987766653 3589999999999999 678
Q ss_pred EEEEEeCCCEEEEEEccCCce-------eeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCcee----
Q 001163 432 LFGVAYSKHIVHLYTYHGGDE-------LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ---- 500 (1134)
Q Consensus 432 ~las~s~dg~v~iwd~~~~~~-------~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~---- 500 (1134)
.+++|..|..|+++|+...+. ..+...+..|...|.-++-.|++.. .+.+++.||+|+-+|++.....
T Consensus 109 iv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p~~ 187 (758)
T KOG1310|consen 109 IVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNPDE 187 (758)
T ss_pred EEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCccc
Confidence 999999999999999985221 1223346679999999999999966 7999999999999999863211
Q ss_pred ---E---EecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee-----cCCCCCeeEEE-ECcCCCEEEE
Q 001163 501 ---Y---IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-----DAPGHSSTMMA-YSADGARLFS 568 (1134)
Q Consensus 501 ---~---~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-----~~~~~~v~~~~-~s~~~~~l~~ 568 (1134)
. .+...--...++.++|... .+|+.|+.|-..++||.+.......- ..+.....++. |+|.+-
T Consensus 188 ~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl---- 262 (758)
T KOG1310|consen 188 DCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL---- 262 (758)
T ss_pred cccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----
Confidence 1 1111223456777777654 79999999999999995422111110 00011111221 233221
Q ss_pred EecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEE
Q 001163 569 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI 636 (1134)
Q Consensus 569 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 636 (1134)
.. ..+...... ..++-+.|+|+|.-|+..-..-.|+++|+..++....+
T Consensus 263 kn--------------~~gn~~~~~-----~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 263 KN--------------SQGNLDRYI-----TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cC--------------cccccccce-----eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 00 001000000 13566889999977776655568999999888766554
No 231
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.51 E-value=1.3e-11 Score=129.95 Aligned_cols=286 Identities=15% Similarity=0.119 Sum_probs=192.1
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
..-.+..++|||.|++| ++.. -..|.+|.-.....+.. -....|..+.|||.++||.
T Consensus 31 ~~~p~~~~~~SP~G~~l-~~~~-~~~V~~~~g~~~~~l~~---------------------~~~~~V~~~~fSP~~kYL~ 87 (561)
T COG5354 31 ENWPVAYVSESPLGTYL-FSEH-AAGVECWGGPSKAKLVR---------------------FRHPDVKYLDFSPNEKYLV 87 (561)
T ss_pred cCcchhheeecCcchhe-ehhh-ccceEEccccchhheee---------------------eecCCceecccCcccceee
Confidence 34578899999999965 4433 34599999887765432 1234799999999999999
Q ss_pred EEeCCC---------------EEEEEEccCCceeeeeeeeecCCCC--EE-EEEEecCCCceEEEEEeCCCeEEEEECCC
Q 001163 435 VAYSKH---------------IVHLYTYHGGDELRNHLEIEAHVGS--VN-DLAFSYPNKQLSVVTCGEDRVIKVWDAVT 496 (1134)
Q Consensus 435 s~s~dg---------------~v~iwd~~~~~~~~~~~~l~~h~~~--V~-~v~~s~~~~~~~l~s~s~d~~i~iwd~~~ 496 (1134)
+-+..+ .+.+||+.+|..+. .+.+...+ .+ -+.|+-+++ +++-- ....++|+++ +
T Consensus 88 tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~-t 160 (561)
T COG5354 88 TWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEI-T 160 (561)
T ss_pred eeccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecch--hhhhh-ccCeEEEEec-C
Confidence 976543 39999999998766 44444444 45 688999888 34333 3357999997 4
Q ss_pred Ccee-EEecCC-CcCEEEEeccccCCccEEEE-----ecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEE
Q 001163 497 GTKQ-YIFEGH-ESPVYSICPHHKENIQFIFS-----TATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC 569 (1134)
Q Consensus 497 ~~~~-~~~~~h-~~~v~~~~~~~~~~~~~l~s-----~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 569 (1134)
+..- ..+..- ...|....|+|.+++..|+. .+.++++++|.+.....+.....-...-..+.|.+.|+++++-
T Consensus 161 ~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 161 DNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVL 240 (561)
T ss_pred CccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEE
Confidence 4322 222211 24566677777766666554 4567889999988555444433333344578899999987654
Q ss_pred ecC-----C--CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCceeEEEecCC
Q 001163 570 GTN-----K--EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADG 640 (1134)
Q Consensus 570 ~~~-----~--~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~ 640 (1134)
... + -++..++++++....+.... .. .++|...+|.|.++.+++.+ .+..+.++|++.. ....+.
T Consensus 241 ~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~-~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--- 314 (561)
T COG5354 241 VMTHTKSNKSYFGESNLYLLRITERSIPVEK-DL-KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--- 314 (561)
T ss_pred EEEeeecccceeccceEEEEeecccccceec-cc-cccceeeeecccCCceeEEecccccceeecccccc-eEEecC---
Confidence 321 1 12356888888744333322 22 34899999999998877765 7788999999876 433333
Q ss_pred CCCCcceEEEcCCCcEEEEEECC---CcEEEEEccCCcee
Q 001163 641 GLQASPCIRFNKEGILLAVSTND---NGIKILANADGIRL 677 (1134)
Q Consensus 641 ~~~~v~~v~~sp~~~~l~~~~~d---g~i~iw~~~~~~~~ 677 (1134)
...=+.+.|+|.+++++.++-| |.+.+|+.......
T Consensus 315 -e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~ 353 (561)
T COG5354 315 -EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKV 353 (561)
T ss_pred -CcccccccccCcccEEEEecCCccccceEEeccCCceEE
Confidence 2234678999999999987765 67888887665333
No 232
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=9.6e-12 Score=143.52 Aligned_cols=237 Identities=12% Similarity=0.026 Sum_probs=160.5
Q ss_pred CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeC---CCEEEEEEccCCceeee
Q 001163 379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS---KHIVHLYTYHGGDELRN 455 (1134)
Q Consensus 379 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~---dg~v~iwd~~~~~~~~~ 455 (1134)
..|.+||.+...... +..|...+.+.+|||||+.|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 368888886554322 4568889999999999999998764 468999999988643
Q ss_pred eeeeecCCCCEEEEEEecCCCceEEEEEeCCCe--EEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEec-CCC-
Q 001163 456 HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV--IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDG- 531 (1134)
Q Consensus 456 ~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~--i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg- 531 (1134)
.+..+.+.+...+|+|||+. ++++.+.++. |.+||+.+++. ..+..+........|++ ||..|+..+ .+|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~ 313 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSP--DGSQIVFESDRSGS 313 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcC--CCCEEEEEECCCCC
Confidence 25556777889999999995 3456666654 77789887765 44555665566677754 557676655 333
Q ss_pred -cEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCC
Q 001163 532 -KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK 610 (1134)
Q Consensus 532 -~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 610 (1134)
.|.+||+...... .+......+....|+|||+.|+....+. +...|.+||+..+.. +.+... . .+....|+|||
T Consensus 314 ~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~~~~~-~~~~i~~~d~~~~~~-~~lt~~-~-~~~~p~~spDG 388 (435)
T PRK05137 314 PQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFTKQGG-GQFSIGVMKPDGSGE-RILTSG-F-LVEGPTWAPNG 388 (435)
T ss_pred CeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEEEcCC-CceEEEEEECCCCce-EeccCC-C-CCCCCeECCCC
Confidence 5777787654433 3333344566788999999998876532 346799999866543 333221 1 35678899999
Q ss_pred CEEEEEeCC------CeEEEEEcCCCceeEEEecCCCCCCcceEEEcC
Q 001163 611 NRFLAAGDE------FMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (1134)
Q Consensus 611 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 652 (1134)
+.|+..+.+ ..++++|+..+.. ..+.. ...+...+|+|
T Consensus 389 ~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~---~~~~~~p~Wsp 432 (435)
T PRK05137 389 RVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT---PGDASDPAWSP 432 (435)
T ss_pred CEEEEEEccCCCCCcceEEEEECCCCce-EEccC---CCCccCcccCC
Confidence 988776532 3688888876654 34432 22356677776
No 233
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=3.4e-12 Score=135.81 Aligned_cols=197 Identities=11% Similarity=0.191 Sum_probs=157.7
Q ss_pred eEEEEc-CCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEecc-
Q 001163 847 PCFALS-KNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK- 924 (1134)
Q Consensus 847 ~~v~~s-~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~- 924 (1134)
..++++ +...++++|+...|+-++++.|+.+..+....+.++++..++ ...+|++|+.+|.|..||..+...+.++.
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~ 215 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDA 215 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeec
Confidence 345555 444566677788899999999999999998889999999999 88899999999999999998766554443
Q ss_pred -----CccC-----ceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCC--CCEE
Q 001163 925 -----GHQK-----RITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD--QTHL 992 (1134)
Q Consensus 925 -----~h~~-----~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d--g~~l 992 (1134)
.|.+ .|+++.|+.+|-.++.|..+|.+.|||+.+.+.. .+.-.... .+|..+.|-+. +..+
T Consensus 216 ~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl---~~kdh~~e----~pi~~l~~~~~~~q~~v 288 (703)
T KOG2321|consen 216 ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL---LVKDHGYE----LPIKKLDWQDTDQQNKV 288 (703)
T ss_pred ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce---eecccCCc----cceeeecccccCCCceE
Confidence 3444 3999999999999999999999999999985522 22222222 45888888664 5566
Q ss_pred EEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcc
Q 001163 993 LAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRL 1054 (1134)
Q Consensus 993 ~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~ 1054 (1134)
++.....++|||-.+|+....+.. ...+..+|+-|++.+++++.++..+-.|=+...-+
T Consensus 289 ~S~Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGP 347 (703)
T KOG2321|consen 289 VSMDKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGP 347 (703)
T ss_pred EecchHHhhhcccccCCceeeccc---cCCcCceeeecCCceEEEecCCCcceeEEccccCC
Confidence 767778999999999999888863 55699999999999999999998888777766544
No 234
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=4.3e-12 Score=146.11 Aligned_cols=238 Identities=13% Similarity=0.083 Sum_probs=158.1
Q ss_pred CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCC---CEEEEEEccCCceeee
Q 001163 379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELRN 455 (1134)
Q Consensus 379 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~d---g~v~iwd~~~~~~~~~ 455 (1134)
..|.+||...+.... +..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 368889986543322 34577789999999999999988743 469999998876432
Q ss_pred eeeeecCCCCEEEEEEecCCCceEEEEEeCCC--eEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEec-CCCc
Q 001163 456 HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDGK 532 (1134)
Q Consensus 456 ~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~ 532 (1134)
+..+.+...+++|+|||+. ++++.+.++ .|.+||+.+++.. .+..+.......+|++ ||+.|+..+ .+|.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~sp--DG~~l~f~sd~~g~ 315 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAP--DGKSIYFTSDRGGR 315 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECC--CCCEEEEEECCCCC
Confidence 3344455668899999995 344555555 6999999888754 4555555555667754 557666555 4555
Q ss_pred --EEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCC
Q 001163 533 --IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK 610 (1134)
Q Consensus 533 --i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 610 (1134)
|.++|+..++.. .+...+......+|+|||+.++....+ ++...|.+||+.+++......+. ......|+|||
T Consensus 316 ~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~~Lt~~~---~~~~p~~spdG 390 (433)
T PRK04922 316 PQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVRTLTPGS---LDESPSFAPNG 390 (433)
T ss_pred ceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeEECCCCC---CCCCceECCCC
Confidence 555565544332 233333445578999999999887643 33557999999888765332221 23457899999
Q ss_pred CEEEEEeC---CCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC
Q 001163 611 NRFLAAGD---EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (1134)
Q Consensus 611 ~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 652 (1134)
+.++..+. .+.|++++... .....+..+ ...+...+|+|
T Consensus 391 ~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~--~g~~~~p~wsp 432 (433)
T PRK04922 391 SMVLYATREGGRGVLAAVSTDG-RVRQRLVSA--DGEVREPAWSP 432 (433)
T ss_pred CEEEEEEecCCceEEEEEECCC-CceEEcccC--CCCCCCCccCC
Confidence 98887764 34688888854 444545432 33566777776
No 235
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=8.8e-14 Score=154.08 Aligned_cols=255 Identities=15% Similarity=0.131 Sum_probs=168.7
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
|+...+|++||-+.++ |++|+..|.|+++++.+|..... ..+|..+|+.+.-|.||..++
T Consensus 1100 ~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs~dgs~~L 1159 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPSVDGSTQL 1159 (1516)
T ss_pred cccceeeEEeecCCce-EEeeeccceEEEEEccCcccccc-------------------ccccccccccccccCCcceee
Confidence 6788999999999885 58999999999999999976553 578999999999999999888
Q ss_pred EEeCCC--EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe-cC---CCc
Q 001163 435 VAYSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EG---HES 508 (1134)
Q Consensus 435 s~s~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~---h~~ 508 (1134)
+.+.-. -..+|++.+- ....+++. .-.++.|+....+ . +.|..-..+.+||++|+..+.++ .+ ...
T Consensus 1160 tsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~-r-~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y 1231 (1516)
T KOG1832|consen 1160 TSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF-R-ALGTEADDALLYDVQTCSPLQTYLTDTVTSSY 1231 (1516)
T ss_pred eeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH-H-HhcccccceEEEecccCcHHHHhcCcchhhhh
Confidence 765543 4689998752 22222332 3467889876553 2 33333357889999999887763 22 222
Q ss_pred CEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe
Q 001163 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 588 (1134)
Q Consensus 509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 588 (1134)
.-++..|+|.. .+++ .||. +||++..+.+..+..-.. ...-.|+|.|..++..+ .+||+++.+
T Consensus 1232 ~~n~a~FsP~D--~LIl---ndGv--LWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS---------EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1232 SNNLAHFSPCD--TLIL---NDGV--LWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS---------EIWDMRTFK 1294 (1516)
T ss_pred hccccccCCCc--ceEe---eCce--eeeeccHHHHhhhhhhee-cccccccCCCceEEeec---------hhhhhHHHH
Confidence 23455565543 4554 3444 799987766655443221 12235899999998864 479999998
Q ss_pred eEEEecCCCCCceEEEEEcCCCCEEEEEe--CC---------------CeEEEEEcCCCceeEEEecCCCCCCcceEEEc
Q 001163 589 VKRTYHGLGKRSVGVVQFDTTKNRFLAAG--DE---------------FMIKFWDMDNVNLLASIDADGGLQASPCIRFN 651 (1134)
Q Consensus 589 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 651 (1134)
.++....-.+ ..+.|+..|+.++..- .| ...+-+|....+.+.++... ..+..++-.
T Consensus 1295 lLh~VP~Ldq---c~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~---R~~~Dlct~ 1368 (1516)
T KOG1832|consen 1295 LLHSVPSLDQ---CAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVD---RCLLDLCTE 1368 (1516)
T ss_pred HHhcCccccc---eEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecc---cchhhhhcC
Confidence 8887766544 4577888887665432 00 12344455555556665542 234555556
Q ss_pred CCCcEEEEE
Q 001163 652 KEGILLAVS 660 (1134)
Q Consensus 652 p~~~~l~~~ 660 (1134)
|...++++-
T Consensus 1369 ~~D~~l~vI 1377 (1516)
T KOG1832|consen 1369 PTDSFLGVI 1377 (1516)
T ss_pred CccceEEEE
Confidence 655555544
No 236
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.48 E-value=2.5e-12 Score=128.64 Aligned_cols=343 Identities=14% Similarity=0.200 Sum_probs=222.5
Q ss_pred eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEE-cCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcE
Q 001163 588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD-MDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI 666 (1134)
Q Consensus 588 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i 666 (1134)
.....++|+.+ .++....-|....+++.++|.+++||- .+.++.-..+.. .....++++.+.++.+.|++|-..|++
T Consensus 15 ~ll~~~eG~~d-~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 15 ELLSKIEGSQD-DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhcCchh-hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeeeccceEEEEEEecceE
Confidence 34556777766 677777778888999999999999994 455655554433 234578899999999999999999998
Q ss_pred EEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccc
Q 001163 667 KILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADE 746 (1134)
Q Consensus 667 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (1134)
.-+.+.........
T Consensus 93 tefs~sedfnkm~~------------------------------------------------------------------ 106 (404)
T KOG1409|consen 93 TEFALSEDFNKMTF------------------------------------------------------------------ 106 (404)
T ss_pred EEEEhhhhhhhcch------------------------------------------------------------------
Confidence 87766543111110
Q ss_pred cccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccC
Q 001163 747 AVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQ 826 (1134)
Q Consensus 747 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d 826 (1134)
++.| ..|...+..+.|+....++++.+.|..+. |....
T Consensus 107 ----~r~~------------------~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e------------------- 144 (404)
T KOG1409|consen 107 ----LKDY------------------LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTE------------------- 144 (404)
T ss_pred ----hhhh------------------hhhhcceeeEEecCCceeEEEeccccceE-EEeec-------------------
Confidence 0001 12788899999999999999999986654 32221
Q ss_pred CCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEc--cCCeEEEEecCCCCCeEEEEEcCCCCcEEEEE
Q 001163 827 PPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNM--MTFKTMTTFMPPPPAATFLAFHPQDNNIIAIG 903 (1134)
Q Consensus 827 ~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~--~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g 903 (1134)
++..+.... .....+++.+.-. +...|. .|.|.+-.+ ....++.++.+|.+.+++++|.+ ..++|.+|
T Consensus 145 --~~~~lg~Y~----~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg 215 (404)
T KOG1409|consen 145 --SGNRLGGYN----FETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSG 215 (404)
T ss_pred --cCCcccceE----eeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEec
Confidence 111111000 0111111111111 333444 455555443 45678889999999999999999 88999999
Q ss_pred eCCCcEEEEEcccceE-EEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceee---------------
Q 001163 904 MEDSSIQIYNVRVDEV-KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFL--------------- 967 (1134)
Q Consensus 904 ~~dg~i~iwd~~~~~~-~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~--------------- 967 (1134)
..|..+.+||+...+- ...+.+|.+.|..+...+--+.|++++.||.|.+|+++........-+
T Consensus 216 ~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn 295 (404)
T KOG1409|consen 216 ASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWN 295 (404)
T ss_pred cccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHH
Confidence 9999999999976543 467889999999999988899999999999999999876443221100
Q ss_pred ----------eecCCCCCCC-CCceEEEEcCCCCEEEEEeeceEEEEeCCCc-------ccceeeccCCCccCEEEEEEc
Q 001163 968 ----------TIPNGRTASA-LADTRVQFHLDQTHLLAVHETQIAIYEAPKL-------ECLKQFVPREASGPITHATYS 1029 (1134)
Q Consensus 968 ----------~~~~~~~~~~-~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~-------~~~~~~~~~~h~~~v~~~~~s 1029 (1134)
.+...|-... ..+...+-+.-..+...+..-.+++.|.... ..++.+. .-...|+.+.+-
T Consensus 296 ~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~ph--ei~tgItamhlq 373 (404)
T KOG1409|consen 296 FRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPH--EIKTGITAMHLQ 373 (404)
T ss_pred HHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccc--ccccceeEEEhh
Confidence 0000000000 1111111122222222344455666554311 1123332 124679999999
Q ss_pred cCCCEEEEEecCCcEEEeecCC
Q 001163 1030 CDSQSIYVAFEEGSVGVLTAST 1051 (1134)
Q Consensus 1030 ~dg~~l~s~s~Dg~i~vwd~~~ 1051 (1134)
.+-.+|+|++.|..|+|||+.+
T Consensus 374 etlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 374 ETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred hhccceeecCCceEEEEEechh
Confidence 9999999999999999999864
No 237
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=9.4e-12 Score=142.69 Aligned_cols=224 Identities=14% Similarity=0.070 Sum_probs=147.4
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCC---CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEE
Q 001163 415 SDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (1134)
Q Consensus 415 ~~h~~~V~~l~~spd~~~las~s~d---g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i 491 (1134)
..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...|
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~I 266 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQI 266 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCceE
Confidence 4577889999999999999987643 469999999886432 3334455678999999995 3446677877666
Q ss_pred EE--CCCCceeEEecCCCcCEEEEeccccCCccEEEEec-CCCcEEEEecCCCC-ceeeecCCCCCeeEEEECcCCCEEE
Q 001163 492 WD--AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDGKIKAWLYDNLG-SRVDYDAPGHSSTMMAYSADGARLF 567 (1134)
Q Consensus 492 wd--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~ 567 (1134)
|. +.++. ...+..+........|++ ||+.|+..+ .++...+|.++... ....+..........+|+|||++++
T Consensus 267 y~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 267 YTVNADGSG-LRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred EEEECCCCC-cEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 65 44443 555655555556667754 557666554 45677777664322 2222222333445678999999999
Q ss_pred EEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCC---eEEEEEcCCCceeEEEecCCCCCC
Q 001163 568 SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF---MIKFWDMDNVNLLASIDADGGLQA 644 (1134)
Q Consensus 568 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~ 644 (1134)
..+..+ +...|.+||+.+++........ ......|+||++.|+.++.++ .+++.+. ++.....+..+ .+.
T Consensus 344 ~~s~~~-g~~~I~v~d~~~g~~~~lt~~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~--~g~ 416 (427)
T PRK02889 344 YISRVG-GAFKLYVQDLATGQVTALTDTT---RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQ--GGD 416 (427)
T ss_pred EEEccC-CcEEEEEEECCCCCeEEccCCC---CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecC--CCC
Confidence 876543 3457999999988755433221 235678999999998887443 3556666 45555555433 335
Q ss_pred cceEEEcCC
Q 001163 645 SPCIRFNKE 653 (1134)
Q Consensus 645 v~~v~~sp~ 653 (1134)
+...+|+|-
T Consensus 417 ~~~p~wsp~ 425 (427)
T PRK02889 417 VREPSWGPF 425 (427)
T ss_pred CCCCccCCC
Confidence 667788773
No 238
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=3e-10 Score=123.80 Aligned_cols=538 Identities=13% Similarity=0.145 Sum_probs=302.0
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
.+....|++|+....| +|+|+.||.++|-.+.+...-...+ -+...+.-.....+.||.+.|.-+.|+.+.+.|-
T Consensus 13 nnvkL~c~~WNke~gy-IAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGY-IACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCCe-EEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEecccccccc
Confidence 4456779999998885 6999999999999987653211100 0111111122235889999999999999999999
Q ss_pred EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEE--------EEECC-----------
Q 001163 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK--------VWDAV----------- 495 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~--------iwd~~----------- 495 (1134)
+...+|.|.||-+-.|.-.... .-+.....|.+++|+.||.. +...-.||.|. ||.-+
T Consensus 88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~k--IcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~w 164 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGTK--ICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLW 164 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCcE--EEEEEccCCEEEEeeccceecchhcchheccceee
Confidence 9999999999999887644322 23345667899999999984 55445555443 45311
Q ss_pred ------------CCcee-EE--------------------ecCCCcCEEEEeccc------cCCccEEEEecCCCcEEEE
Q 001163 496 ------------TGTKQ-YI--------------------FEGHESPVYSICPHH------KENIQFIFSTATDGKIKAW 536 (1134)
Q Consensus 496 ------------~~~~~-~~--------------------~~~h~~~v~~~~~~~------~~~~~~l~s~s~dg~i~vw 536 (1134)
.|++. .. +......|..++|.. .++...++.+..+|.+.+-
T Consensus 165 s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiM 244 (1189)
T KOG2041|consen 165 SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIM 244 (1189)
T ss_pred cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhh
Confidence 11100 00 001111233444431 2355788999999998887
Q ss_pred ecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCC----Ce-EEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCC
Q 001163 537 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG----ES-YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN 611 (1134)
Q Consensus 537 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~----~~-~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 611 (1134)
.-.+......+.. +-.+....|+++|..|++++.+.+. +. .|..+. .-|+.+.+++.... .|++++|-..|-
T Consensus 245 R~eND~~Pvv~dt-gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~-~It~lsWEg~gL 321 (1189)
T KOG2041|consen 245 RSENDPEPVVVDT-GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS-CITGLSWEGTGL 321 (1189)
T ss_pred hhcCCCCCeEEec-ccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCc-eeeeeEEcCCce
Confidence 6655544444433 3578889999999999999876432 22 344443 45777888877665 899999987776
Q ss_pred EEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCccccccc
Q 001163 612 RFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRV 691 (1134)
Q Consensus 612 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 691 (1134)
.++.+ -|+.|++=+++..-.-..+.. . +.+--.+.-+ ..-.|.+||..+.+..++.+.+...-
T Consensus 322 riA~A-vdsfiyfanIRP~ykWgy~e~-----T---vVy~y~~~e~----p~y~i~Fwdtk~nek~vK~V~~~~~~---- 384 (1189)
T KOG2041|consen 322 RIAIA-VDSFIYFANIRPEYKWGYIEE-----T---VVYVYQKEEL----PQYGIMFWDTKTNEKTVKTVTHFENM---- 384 (1189)
T ss_pred EEEEE-ecceEEEEeecccceEEEeee-----E---EEEEEccCCC----cceEEEEEecccChhhhhhhcceeeh----
Confidence 66555 467888777654332222210 1 1111111100 11245677777776666665442111
Q ss_pred chhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccC----Cccceec
Q 001163 692 ASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEIT----EPSQCRS 767 (1134)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~----~~~~~~~ 767 (1134)
++..+.| .++.-..++.+.-+..-... .-..|..
T Consensus 385 -------------------a~~~ehC-----------------------vL~~~~d~~~i~e~s~le~~~~~~~l~LCNS 422 (1189)
T KOG2041|consen 385 -------------------AFYREHC-----------------------VLINRQDDGVIPEYSTLENRSRVYFLQLCNS 422 (1189)
T ss_pred -------------------heecccE-----------------------EEEeccccCCCcchhhhhcccceEEEeeecc
Confidence 0111111 00000111111111000000 0000111
Q ss_pred cccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCee
Q 001163 768 LRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVP 847 (1134)
Q Consensus 768 ~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~ 847 (1134)
+..+....-..|.-.-..-++..++.++.+ .+.+|.....++...-. + ......+ .
T Consensus 423 IGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~--------------~--~k~rkeg-----r-- 478 (1189)
T KOG2041|consen 423 IGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLA--------------G--VKIRKEG-----R-- 478 (1189)
T ss_pred cCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchhhhhh--------------h--hhhcccc-----c--
Confidence 111111112233333344466667777766 57788766443321100 0 0000000 0
Q ss_pred EEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCc
Q 001163 848 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGH 926 (1134)
Q Consensus 848 ~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h 926 (1134)
|+-| ..-+++ |+++ +.. ..++.+...+|.+++.+. ++|.++-..|.|.-|.+.+.-...... -
T Consensus 479 ---~h~D--dtp~ga~d~~l---~ys----~kt~~G~~DpICAl~~sd---k~l~vareSG~I~rySl~nv~l~n~y~-~ 542 (1189)
T KOG2041|consen 479 ---FHGD--DTPEGAQDRTL---EYS----TKTLLGSKDPICALCISD---KFLMVARESGGIYRYSLNNVVLTNSYP-V 542 (1189)
T ss_pred ---ccCC--CCccchhhcee---ecc----ceeeccCCCcceeeeecc---eEEEEEeccCceEEEEecceeeeeccc-c
Confidence 1111 111122 3322 111 356677888999999864 799999999999999999877666554 3
Q ss_pred cCceEEEEEeeCCCEEEEEeCCCcEEEEECCCC-ccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEe
Q 001163 927 QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGW-EKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYE 1004 (1134)
Q Consensus 927 ~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd 1004 (1134)
+..|..++.+-+...+|....-|.+.+.|+.-. .......+...+. ..|-.+.|..|+..|++ -....++|++
T Consensus 543 n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~er-----rDVWd~~Wa~dNp~llAlmeKtrmyifr 617 (1189)
T KOG2041|consen 543 NPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSER-----RDVWDYEWAQDNPNLLALMEKTRMYIFR 617 (1189)
T ss_pred CchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhh-----hhhhhhhhccCCchHHhhhhhceEEEec
Confidence 456889999888889998888898888888731 1111111111111 23677788888776665 3445677776
Q ss_pred CCC
Q 001163 1005 APK 1007 (1134)
Q Consensus 1005 ~~~ 1007 (1134)
-..
T Consensus 618 gnd 620 (1189)
T KOG2041|consen 618 GND 620 (1189)
T ss_pred CcC
Confidence 543
No 239
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.47 E-value=3.9e-12 Score=134.47 Aligned_cols=253 Identities=10% Similarity=0.114 Sum_probs=166.8
Q ss_pred CCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEE-----cCCCC
Q 001163 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW-----SPDGT 431 (1134)
Q Consensus 357 ~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-----spd~~ 431 (1134)
+.+....++-.|++|+.--+ ..+++|+...+..+.. ++....+.+- ...|=+| .|++-
T Consensus 124 g~~~~~~~~~~gd~lcFnvg--~~lyv~~~~g~~~~~~-------------pi~k~~y~gt--~P~cHdfn~~~a~~~g~ 186 (636)
T KOG2394|consen 124 GIVTNTNQSGKGDRLCFNVG--RELYVYSYRGAADLSK-------------PIDKREYKGT--SPTCHDFNSFTATPKGL 186 (636)
T ss_pred cceeeccccCCCCEEEEecC--CeEEEEEccCcchhcc-------------chhhhcccCC--CCceecccccccCCCCc
Confidence 35566667777887765433 4589999886544331 1111112222 2233334 35677
Q ss_pred EEEEEeCCCEEEEEEccCCceeeeeeeeec--CCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcC
Q 001163 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEA--HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP 509 (1134)
Q Consensus 432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~--h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~ 509 (1134)
-|+.|-.-|.|.+.|....+ +.++..... -+..|+|+.|-|.+.. .++.+-.+|.+.++|.. +...
T Consensus 187 dllIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~----------~~~~ 254 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE----------IVCG 254 (636)
T ss_pred ceEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc----------cccc
Confidence 88889899999998876632 222111111 3467999999998776 56677788999999851 1112
Q ss_pred EEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCee
Q 001163 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV 589 (1134)
Q Consensus 510 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 589 (1134)
.+.-++..-.++..+.....-+ -.+...+..+......|..++|+|||++||+.+.| +.++|+|..+.++
T Consensus 255 ~t~p~~~~~k~~~~f~i~t~ks------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqD----GfLRvF~fdt~eL 324 (636)
T KOG2394|consen 255 ATAPSYQALKDGDQFAILTSKS------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQD----GFLRIFDFDTQEL 324 (636)
T ss_pred CCCCcccccCCCCeeEEeeeec------cccCCccceeEeccccccceeEcCCCceEEEEecC----ceEEEeeccHHHH
Confidence 2222222223333333221100 01112333333334588999999999999999864 4799999999888
Q ss_pred EEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEc
Q 001163 590 KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN 651 (1134)
Q Consensus 590 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 651 (1134)
+..++..-. ...+++|+|||++|++|++|--|.||.+..++.+..-. +|...|+.|+|.
T Consensus 325 lg~mkSYFG-GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq--GHkSWVs~VaFD 383 (636)
T KOG2394|consen 325 LGVMKSYFG-GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ--GHKSWVSVVAFD 383 (636)
T ss_pred HHHHHhhcc-ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc--ccccceeeEeec
Confidence 877776665 78899999999999999999999999999988887655 558899999998
No 240
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.46 E-value=3.7e-10 Score=125.62 Aligned_cols=207 Identities=16% Similarity=0.205 Sum_probs=129.7
Q ss_pred eeEEEEcCCCCeEEEee--CCeEEEEEccC-CeEEEE---e----------cCCCCCeEEEEEcCCCCcEEEEEe-CCCc
Q 001163 846 VPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMTT---F----------MPPPPAATFLAFHPQDNNIIAIGM-EDSS 908 (1134)
Q Consensus 846 v~~v~~s~dg~~la~~s--dg~i~lwd~~~-~~~~~~---~----------~~~~~~v~~l~~sp~~~~~la~g~-~dg~ 908 (1134)
...++++|++++|+++. +|+|.++++.. +..... + +.......++.|+| +++++++.. ....
T Consensus 89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~ 167 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADR 167 (345)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTE
T ss_pred cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCE
Confidence 34566777777777765 56777777754 332222 1 11234578999999 777776654 3458
Q ss_pred EEEEEcccce--EE--Eecc-CccCceEEEEEeeCCCEEEEEe-CCCcEEEEECC--CCccccceeeeecCCCCCCCCCc
Q 001163 909 IQIYNVRVDE--VK--TKLK-GHQKRITGLAFSNTLNVLVSSG-ADSQLCVWSTD--GWEKQASKFLTIPNGRTASALAD 980 (1134)
Q Consensus 909 i~iwd~~~~~--~~--~~l~-~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v 980 (1134)
|++|++.... +. ..+. .....-+.++|+|++++++... .+++|.++++. .+.......+.............
T Consensus 168 v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T PF10282_consen 168 VYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP 247 (345)
T ss_dssp EEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred EEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence 9999997654 21 2222 2334578999999999887655 47789999988 44332222222221111111357
Q ss_pred eEEEEcCCCCEEEEE--eeceEEEEeCC--Cccc--ceeeccCCCccCEEEEEEccCCCEEEEEec-CCcEEEeec--CC
Q 001163 981 TRVQFHLDQTHLLAV--HETQIAIYEAP--KLEC--LKQFVPREASGPITHATYSCDSQSIYVAFE-EGSVGVLTA--ST 1051 (1134)
Q Consensus 981 ~~l~fs~dg~~l~~~--~d~~i~iwd~~--~~~~--~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~-Dg~i~vwd~--~~ 1051 (1134)
..++++|||++|.++ ..++|.+|+++ +++. +..+... ....+.++++|||++|+++.. ++.|.+|++ ++
T Consensus 248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 248 AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG--GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES--SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred eeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC--CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 889999999999996 45789999994 2332 2333321 345899999999999988774 578999976 46
Q ss_pred Ccce
Q 001163 1052 LRLR 1055 (1134)
Q Consensus 1052 ~~~~ 1055 (1134)
|.+.
T Consensus 326 G~l~ 329 (345)
T PF10282_consen 326 GKLT 329 (345)
T ss_dssp TEEE
T ss_pred CcEE
Confidence 6654
No 241
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.8e-11 Score=140.91 Aligned_cols=226 Identities=12% Similarity=0.130 Sum_probs=147.0
Q ss_pred eEEEeecCCCeeEEEEcCCCCeEEEEEeC--CCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEE
Q 001163 349 VVMTLNQGSAVKSMDFHPVQQILLVVGTN--MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (1134)
Q Consensus 349 ~~~~~~h~~~V~~v~fsp~g~~lla~gs~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 426 (1134)
......+...+.+.+|||||++|+.+... +..|.+||+.+++... +..+.+...+++|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~~~ 255 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAPSF 255 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCceE
Confidence 33344577889999999999977655432 3469999998876432 2233445568899
Q ss_pred cCCCCEEEE-EeCCC--EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEe-CCCe--EEEEECCCCcee
Q 001163 427 SPDGTLFGV-AYSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRV--IKVWDAVTGTKQ 500 (1134)
Q Consensus 427 spd~~~las-~s~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-~d~~--i~iwd~~~~~~~ 500 (1134)
||||+.|+. .+.+| .|.+||+.+++.. .+..|.......+|+|||+ .|+..+ .++. |.++|+.+++..
T Consensus 256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~iy~~dl~~g~~~ 329 (433)
T PRK04922 256 SPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQIYRVAASGGSAE 329 (433)
T ss_pred CCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCCeE
Confidence 999998764 45555 6999999987643 2555666667889999999 455444 4444 777787776643
Q ss_pred EEecCCCcCEEEEeccccCCccEEEEecCCC---cEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCe
Q 001163 501 YIFEGHESPVYSICPHHKENIQFIFSTATDG---KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGES 577 (1134)
Q Consensus 501 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 577 (1134)
. +..+.......+|++ +|+.|+..+.++ .|.+||+.++... .+. +........|+|||++++..+.. .+..
T Consensus 330 ~-lt~~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~-~g~~ 403 (433)
T PRK04922 330 R-LTFQGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATRE-GGRG 403 (433)
T ss_pred E-eecCCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEec-CCce
Confidence 3 222223344566754 557776654332 5899998766544 332 22244567999999999887765 3466
Q ss_pred EEEEEeCCCCeeEEEecCCCCCceEEEEEcC
Q 001163 578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDT 608 (1134)
Q Consensus 578 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 608 (1134)
.|.+++... .....+..+.. .+...+|+|
T Consensus 404 ~L~~~~~~g-~~~~~l~~~~g-~~~~p~wsp 432 (433)
T PRK04922 404 VLAAVSTDG-RVRQRLVSADG-EVREPAWSP 432 (433)
T ss_pred EEEEEECCC-CceEEcccCCC-CCCCCccCC
Confidence 799999854 44444543332 455566765
No 242
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=2.2e-11 Score=139.40 Aligned_cols=222 Identities=10% Similarity=0.081 Sum_probs=146.6
Q ss_pred eecCCCeeEEEEcCCCCeEEEEEe--CCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCC
Q 001163 353 LNQGSAVKSMDFHPVQQILLVVGT--NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG 430 (1134)
Q Consensus 353 ~~h~~~V~~v~fsp~g~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~ 430 (1134)
..+...+.+.+|||||++|+.+.. .+..|.+||+.+|+... +....+.+..++|||||
T Consensus 195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~~~~~~~~SPDG 254 (429)
T PRK03629 195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAPAFSPDG 254 (429)
T ss_pred ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCCCcCCeEECCCC
Confidence 446778999999999998765542 34579999998876432 11223334568999999
Q ss_pred CEEEEE-eCCC--EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC-CC--eEEEEECCCCceeEEec
Q 001163 431 TLFGVA-YSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-DR--VIKVWDAVTGTKQYIFE 504 (1134)
Q Consensus 431 ~~las~-s~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-d~--~i~iwd~~~~~~~~~~~ 504 (1134)
+.|+.. +.+| .|.+||+.+++... +..+...+....|+|||+ .|+..+. ++ .|.++|+.+++.. .+.
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt 327 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKVNINGGAPQ-RIT 327 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCC--EEEEEeCCCCCceEEEEECCCCCeE-Eee
Confidence 988865 4444 58999998876432 444556788999999999 4555544 34 4555577666543 333
Q ss_pred CCCcCEEEEeccccCCccEEEEecCC---CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEE
Q 001163 505 GHESPVYSICPHHKENIQFIFSTATD---GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581 (1134)
Q Consensus 505 ~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 581 (1134)
.+.......+|+ ++|++|+..+.+ ..|.+||+.++.... +.. ........|+|||+.|+..+.++. ...+.+
T Consensus 328 ~~~~~~~~~~~S--pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s~~~~-~~~l~~ 402 (429)
T PRK03629 328 WEGSQNQDADVS--SDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSSSQGM-GSVLNL 402 (429)
T ss_pred cCCCCccCEEEC--CCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEEcCCC-ceEEEE
Confidence 333344556665 455777665433 358888987665332 322 223456789999999999887543 456888
Q ss_pred EeCCCCeeEEEecCCCCCceEEEEEcC
Q 001163 582 WNESEGAVKRTYHGLGKRSVGVVQFDT 608 (1134)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~v~~~~~~~ 608 (1134)
+++ +|.....+.++.. .+...+|+|
T Consensus 403 ~~~-~G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 403 VST-DGRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EEC-CCCCeEECccCCC-CcCCcccCC
Confidence 888 4555566666554 667777876
No 243
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=2.6e-10 Score=116.45 Aligned_cols=279 Identities=10% Similarity=0.070 Sum_probs=183.2
Q ss_pred ccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccC---CeEEeeecCCCCCCcccccccCCCCcc
Q 001163 748 VEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN---AVHKLWKWPRNERNSTGKATTNQAPQL 824 (1134)
Q Consensus 748 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~ 824 (1134)
++.|++|++...........+ -.....++-++|+|+++.|.++..+ |.+.-|.++
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~----v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD------------------ 72 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQL----VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRID------------------ 72 (346)
T ss_pred CCceEEEEEeCcccccchhhh----ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEc------------------
Confidence 467999999853322222111 1256778899999999998888764 666666554
Q ss_pred cCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee--CCeEEEEEccC-CeEEEE--ecCCCCC----------eEE
Q 001163 825 WQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMTT--FMPPPPA----------ATF 889 (1134)
Q Consensus 825 ~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~-~~~~~~--~~~~~~~----------v~~ 889 (1134)
..+|++....-.. ....+-..++++++|++|+++. .|.|.++-+.. |.+... ...|.+. +.+
T Consensus 73 --~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 73 --PDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred --CCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 2333321110000 0223347899999999999998 58899999854 433222 1224443 888
Q ss_pred EEEcCCCCcEEEEEeC-CCcEEEEEcccceEEEecc---CccCceEEEEEeeCCCEEEEEeC-CCcEEEEECCC--Cccc
Q 001163 890 LAFHPQDNNIIAIGME-DSSIQIYNVRVDEVKTKLK---GHQKRITGLAFSNTLNVLVSSGA-DSQLCVWSTDG--WEKQ 962 (1134)
Q Consensus 890 l~~sp~~~~~la~g~~-dg~i~iwd~~~~~~~~~l~---~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~iwd~~~--~~~~ 962 (1134)
..|.| ++++|++.+- -..|.+|++..|++...-. .....-+.|+|+|++++.....+ +++|.+|..+. ++..
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 99999 8888877643 3379999999876432211 23345688999999999887765 89999999987 3333
Q ss_pred cceeeeecCCCCCCCCCceEEEEcCCCCEEEEE--eeceEEEEeCCCcccceeec--cCCCccCEEEEEEccCCCEEEEE
Q 001163 963 ASKFLTIPNGRTASALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLECLKQFV--PREASGPITHATYSCDSQSIYVA 1038 (1134)
Q Consensus 963 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~i~iwd~~~~~~~~~~~--~~~h~~~v~~~~~s~dg~~l~s~ 1038 (1134)
....+...........+...+.+++||++|.++ ....|.+|.+........+. ..-+....+...|+++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 322333222233333567889999999999997 33478888876432211111 11234457889999999999988
Q ss_pred ecC-CcEEEeecCCC
Q 001163 1039 FEE-GSVGVLTASTL 1052 (1134)
Q Consensus 1039 s~D-g~i~vwd~~~~ 1052 (1134)
..| ..|.+|..+..
T Consensus 309 ~q~sd~i~vf~~d~~ 323 (346)
T COG2706 309 NQKSDNITVFERDKE 323 (346)
T ss_pred ccCCCcEEEEEEcCC
Confidence 876 56888887553
No 244
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=9.3e-11 Score=125.51 Aligned_cols=330 Identities=15% Similarity=0.170 Sum_probs=204.9
Q ss_pred CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEE-----eC-----CCe
Q 001163 552 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAA-----GD-----EFM 621 (1134)
Q Consensus 552 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~-----dg~ 621 (1134)
..+...+++++|++++.+.. ..+.|++..++..+.+.... .+..+.|+|.+++|.+- .. .-.
T Consensus 35 ~~~~v~~~S~~G~lfA~~~~-----~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn 106 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSDN-----QVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPN 106 (566)
T ss_pred CcceeEEEcCCCcEEEEEcC-----CeEEEEEccCCcEEEEeccc---eeeeeeecccccccccccccccccCCCCCCCc
Confidence 35678899999999998753 24899998888644444332 56789999999988762 11 234
Q ss_pred EEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccc
Q 001163 622 IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPA 701 (1134)
Q Consensus 622 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1134)
+.+|+..++.....+......+ .+..|+.|..+.+ --..+.+.+|++.+.......+........
T Consensus 107 ~~v~~vet~~~~s~~q~k~Q~~--W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~kl~~~~i~~f------------ 171 (566)
T KOG2315|consen 107 VLVYNVETGVQRSQIQKKMQNG--WVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQHKLSVSGITML------------ 171 (566)
T ss_pred eeeeeeccceehhheehhhhcC--cccccccchhhhh-hhhcceEEEEecCCccceeeeeeccceeeE------------
Confidence 7799999976666665443222 5888988865433 223468999998775444444433222111
Q ss_pred cccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeeccc--CCccceeccccCCccccccE
Q 001163 702 IGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEI--TEPSQCRSLRLPDNLTAMRV 779 (1134)
Q Consensus 702 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~i 779 (1134)
.++|..+ ...+..+.+. ..+.-..+++|..... ......+.+ ....=
T Consensus 172 ---------~lSpgp~-----~~~vAvyvPe-----------~kGaPa~vri~~~~~~~~~~~~a~ksF------Fkadk 220 (566)
T KOG2315|consen 172 ---------SLSPGPE-----PPFVAVYVPE-----------KKGAPASVRIYKYPEEGQHQPVANKSF------FKADK 220 (566)
T ss_pred ---------EecCCCC-----CceEEEEccC-----------CCCCCcEEEEeccccccccchhhhccc------cccce
Confidence 2333311 0011111111 1222346777776621 111222222 11222
Q ss_pred EEEEEecCCceeeeecc---CCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCC
Q 001163 780 SRLIYTNSGLAILALAS---NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS 856 (1134)
Q Consensus 780 ~~l~~spdg~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~ 856 (1134)
..+.|++-|.-|++... |.+ +...-...++.+.+.. |.-....+. ..++|.++.|+++|+
T Consensus 221 vqm~WN~~gt~LLvLastdVDkt-------------n~SYYGEq~Lyll~t~-g~s~~V~L~---k~GPVhdv~W~~s~~ 283 (566)
T KOG2315|consen 221 VQMKWNKLGTALLVLASTDVDKT-------------NASYYGEQTLYLLATQ-GESVSVPLL---KEGPVHDVTWSPSGR 283 (566)
T ss_pred eEEEeccCCceEEEEEEEeecCC-------------CccccccceEEEEEec-CceEEEecC---CCCCceEEEECCCCC
Confidence 34567766654433221 210 0001111123333333 333333343 479999999999999
Q ss_pred eEEEee---CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCC---CcEEEEEcccceEEEeccCccCce
Q 001163 857 YVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED---SSIQIYNVRVDEVKTKLKGHQKRI 930 (1134)
Q Consensus 857 ~la~~s---dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~d---g~i~iwd~~~~~~~~~l~~h~~~V 930 (1134)
-+++.. -.++.|+|+ .+..+..+ ..++-+++-|+| .|++|+.++-+ |.+.|||+.+.+++..+..-..
T Consensus 284 EF~VvyGfMPAkvtifnl-r~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t-- 357 (566)
T KOG2315|consen 284 EFAVVYGFMPAKVTIFNL-RGKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT-- 357 (566)
T ss_pred EEEEEEecccceEEEEcC-CCCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCCc--
Confidence 887775 378999998 45555555 567888999999 88888887765 6999999999988888876554
Q ss_pred EEEEEeeCCCEEEEEeC------CCcEEEEECCC
Q 001163 931 TGLAFSNTLNVLVSSGA------DSQLCVWSTDG 958 (1134)
Q Consensus 931 ~~l~~s~d~~~l~s~s~------Dg~i~iwd~~~ 958 (1134)
+-+.|+|||.+++|+.. |..++||++..
T Consensus 358 t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 358 TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 44689999999998864 77899999887
No 245
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.43 E-value=1.1e-12 Score=126.52 Aligned_cols=168 Identities=20% Similarity=0.295 Sum_probs=128.0
Q ss_pred cchHHHHHHHHHHhhhcCHHHHHHHHHHhcCCCcc---------HHHHHHHhhcccHHHHHHHHccc--CcccCCccchh
Q 001163 3 SLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFN---------MRYFEDMVTNGEWDEVEKYLSGF--TKVDDNRYSMK 71 (1134)
Q Consensus 3 ~~~~e~~~li~q~L~~~g~~~s~~~l~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~~--~~~~~~~~~~~ 71 (1134)
...+|+.|||+.||-.+||.++|..+.+|+|+... -..+|.+|..|+.++|++.+..+ ..++.+. .
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~---~ 100 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR---E 100 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch---h
Confidence 45789999999999999999999999999999772 35699999999999999999998 3344432 2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccccccccCCC--ChhHHHHHHHHHHh
Q 001163 72 IFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYGD--TKSARGIMLAELKK 149 (1134)
Q Consensus 72 ~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~--~~~~R~~l~~~l~~ 149 (1134)
+.|.+++|+++|++..+..++|+.|+|.+|.|+...+++.++.|...+...-++.....+ ... ....|.++...+.+
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp-~~~l~~~s~R~kvA~~vN~ 179 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESP-SAELLSQSLRQKVASEVNS 179 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCc-HHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999887888888888877665554322211 111 24568888888877
Q ss_pred hcccCcCccccccCCCCchHHHHHHHHHHHHHH
Q 001163 150 LIEANPLFRDKLQFPSLKNSRLRTLINQSLNWQ 182 (1134)
Q Consensus 150 ~i~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q 182 (1134)
.|=...- . -...+|..||..-..-|
T Consensus 180 aiL~~~~---~-----~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 180 AILASQE---H-----ESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHHHhc---c-----cccchHHHHHHHHHHHH
Confidence 6543211 0 11347777774444333
No 246
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=3.2e-10 Score=121.48 Aligned_cols=285 Identities=17% Similarity=0.239 Sum_probs=180.9
Q ss_pred cEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCe
Q 001163 778 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY 857 (1134)
Q Consensus 778 ~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~ 857 (1134)
.+..+.|+|-|.+|.+--. |.+... .-.....+++|+++++.... .+.. ....-++..|+.|..+
T Consensus 75 ~~~~L~fSP~g~yL~T~e~------~~i~~~------~~~~~pn~~v~~vet~~~~s-~~q~--k~Q~~W~~qfs~dEsl 139 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEP------WAIYGP------KNASNPNVLVYNVETGVQRS-QIQK--KMQNGWVPQFSIDESL 139 (566)
T ss_pred eeeeeeecccccccccccc------cccccC------CCCCCCceeeeeeccceehh-heeh--hhhcCcccccccchhh
Confidence 4667788888887654221 111100 00012345677777743322 2222 1111258899999887
Q ss_pred EEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCC--cEEEE-----EeCCCcEEEEEcccceEEEec--c-Ccc
Q 001163 858 VMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDN--NIIAI-----GMEDSSIQIYNVRVDEVKTKL--K-GHQ 927 (1134)
Q Consensus 858 la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~--~~la~-----g~~dg~i~iwd~~~~~~~~~l--~-~h~ 927 (1134)
.|--..+.+.+|+..+.+.+.. +-|...|+.+++|| ++ ..||+ ++.-+.|+||.......-..+ + -..
T Consensus 140 ~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSp-gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFk 217 (566)
T KOG2315|consen 140 AARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSP-GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFK 217 (566)
T ss_pred hhhhhcceEEEEecCCccceee-eeeccceeeEEecC-CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccc
Confidence 6655688999999977443322 22678899999999 53 34443 345568999988632211111 0 011
Q ss_pred CceEEEEEeeCCCE---EEEEeCCC---------cEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-
Q 001163 928 KRITGLAFSNTLNV---LVSSGADS---------QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA- 994 (1134)
Q Consensus 928 ~~V~~l~~s~d~~~---l~s~s~Dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~- 994 (1134)
..=..+.|++-|.- |++...|. ++++.++++ + ...+.... . ++|.++.|+|+|+-+++
T Consensus 218 adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g-~---s~~V~L~k-~----GPVhdv~W~~s~~EF~Vv 288 (566)
T KOG2315|consen 218 ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG-E---SVSVPLLK-E----GPVHDVTWSPSGREFAVV 288 (566)
T ss_pred cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC-c---eEEEecCC-C----CCceEEEECCCCCEEEEE
Confidence 22234677766653 23333343 588888773 2 12233321 1 46999999999998887
Q ss_pred -E-eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecC---CcEEEeecCCCcceeecCCCcccCCCCC
Q 001163 995 -V-HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEE---GSVGVLTASTLRLRCRINPTAYLPTNPS 1069 (1134)
Q Consensus 995 -~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~h~ 1069 (1134)
| .-..+.|||++ +..+..+. .++-..+.|+|.|++|+.++-+ |.|-|||+.+.+++..+....
T Consensus 289 yGfMPAkvtifnlr-~~~v~df~----egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~------- 356 (566)
T KOG2315|consen 289 YGFMPAKVTIFNLR-GKPVFDFP----EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN------- 356 (566)
T ss_pred EecccceEEEEcCC-CCEeEeCC----CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC-------
Confidence 4 45789999987 56665654 5677899999999998877754 889999999988887766332
Q ss_pred CCceeEEEEecCCCCCEEEEEec------CCcEEEEeCCCCC
Q 001163 1070 LRVYPLVIAGNPTDPNQFALGLT------DGGVYIIEPLEAE 1105 (1134)
Q Consensus 1070 ~~v~~~~~~~~p~~~~~l~s~~~------Dg~v~vW~~~~~~ 1105 (1134)
+..+.|+| ||.+|++++. |+.++||++....
T Consensus 357 ----tt~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 357 ----TTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred ----ceEEEEcC-CCcEEEEEeccccEEecCCeEEEEecCce
Confidence 33458999 7898888776 6789999997443
No 247
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=5e-11 Score=126.58 Aligned_cols=315 Identities=11% Similarity=0.166 Sum_probs=201.7
Q ss_pred eeEeCCCCCCcccccCCCC------CceeEEEeecCCCeeEEEEcCCCCeEEEEEe----------CCCcEEEEecCCcc
Q 001163 327 PVAYTPQSLGQSSYSTDDL------PKTVVMTLNQGSAVKSMDFHPVQQILLVVGT----------NMGDVMLWEVGSRE 390 (1134)
Q Consensus 327 ~~~~s~~~~~l~~~~~d~~------~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs----------~dg~v~iwd~~~~~ 390 (1134)
-+.|||.|.+|++.-..+. .-..++.|.|. .|.-+.|||+.+||+.-+. ....++|||+.+|.
T Consensus 215 yv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~ 293 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGL 293 (698)
T ss_pred eEEecCCceEEEEEeccceeeecCccHHHHHhccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccc
Confidence 4789999999988755443 22334444454 6889999999998743331 12579999999998
Q ss_pred ceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEE
Q 001163 391 RIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLA 470 (1134)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~ 470 (1134)
..+.+.+ +.+....=.-..||.|++|+|--..| +|.||+..+-..+.. ..+ .-..|....
T Consensus 294 lkrsF~~----------------~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~-Ksl--ki~gIr~Fs 353 (698)
T KOG2314|consen 294 LKRSFPV----------------IKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDK-KSL--KISGIRDFS 353 (698)
T ss_pred hhcceec----------------cCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecc-ccc--CCccccCcc
Confidence 8764322 11111122237899999999988775 499999876443321 112 234588899
Q ss_pred EecCCCceEEEEEeC--C---CeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEe----------cCCCcEEE
Q 001163 471 FSYPNKQLSVVTCGE--D---RVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST----------ATDGKIKA 535 (1134)
Q Consensus 471 ~s~~~~~~~l~s~s~--d---~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------s~dg~i~v 535 (1134)
|+|.+. +||--.. + ..+.+-.+.+++.+++-.-|. |..+..+...+|.+|+.- +.-..+.|
T Consensus 354 wsP~~~--llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eI 429 (698)
T KOG2314|consen 354 WSPTSN--LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEI 429 (698)
T ss_pred cCCCcc--eEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEeeEEE
Confidence 999988 5554332 1 256677777777776655443 444555556666777542 11123556
Q ss_pred EecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC-C---eeEEEecCCCCCceEEEEEcCCCC
Q 001163 536 WLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE-G---AVKRTYHGLGKRSVGVVQFDTTKN 611 (1134)
Q Consensus 536 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~---~~~~~~~~~~~~~v~~~~~~~~~~ 611 (1134)
+.++..........-...|...+|-|.|..+++.+.+ +....+.+|.+++ . +.+..+.. ...+.+.|+|.|.
T Consensus 430 frireKdIpve~velke~vi~FaWEP~gdkF~vi~g~-~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPkG~ 505 (698)
T KOG2314|consen 430 FRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN-TVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPKGR 505 (698)
T ss_pred EEeeccCCCceeeecchheeeeeeccCCCeEEEEEcc-ccccceeEEEeecCCCchhhhhhhcc---cccceEEEcCCCc
Confidence 6666544444333334578889999999988876644 3355688888773 2 23333333 2567899999999
Q ss_pred EEEEEe---CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECC------CcEEEEEcc
Q 001163 612 RFLAAG---DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND------NGIKILANA 672 (1134)
Q Consensus 612 ~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d------g~i~iw~~~ 672 (1134)
+++.+. ..|.+.++|.........- ...| ...+.+.|.|.|+++++++.- ..-++|++.
T Consensus 506 fvvva~l~s~~g~l~F~D~~~a~~k~~~-~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 506 FVVVAALVSRRGDLEFYDTDYADLKDTA-SPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred EEEEEEecccccceEEEecchhhhhhcc-Cccc-cccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 998865 5789999998753322221 1122 245789999999999998753 344555544
No 248
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.42 E-value=2.4e-07 Score=114.11 Aligned_cols=518 Identities=13% Similarity=0.148 Sum_probs=289.3
Q ss_pred CCEEEEEEcCCCCEE--EEEeCCC--EEEEEEccCCceeeeeeeee-----cCCCCEEEEEEecCCCceEEEEEeCCCeE
Q 001163 419 ASVNRVMWSPDGTLF--GVAYSKH--IVHLYTYHGGDELRNHLEIE-----AHVGSVNDLAFSYPNKQLSVVTCGEDRVI 489 (1134)
Q Consensus 419 ~~V~~l~~spd~~~l--as~s~dg--~v~iwd~~~~~~~~~~~~l~-----~h~~~V~~v~~s~~~~~~~l~s~s~d~~i 489 (1134)
..+...+|.+..+.+ +++.... .|.+..............+. ...+.|.++.|.++.. .++.+..+|.|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceE
Confidence 467778888755544 3333332 34444433332222222332 3456799999999998 57777778889
Q ss_pred EEE----ECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecC------------C-C----------C
Q 001163 490 KVW----DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD------------N-L----------G 542 (1134)
Q Consensus 490 ~iw----d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~------------~-~----------~ 542 (1134)
.+. |..+.. +.....-...|.+++|+|+. .+|+..+.++++.+-+-+ . + +
T Consensus 100 ~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~--Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGk 176 (928)
T PF04762_consen 100 ILVREDPDPDEDE-IEIVGSVDSGILAASWSPDE--ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGK 176 (928)
T ss_pred EEEEccCCCCCce-eEEEEEEcCcEEEEEECCCc--CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCc
Confidence 888 433332 22222346789999997655 788888888887765321 0 0 0
Q ss_pred ceeeecC------------------------CCCCeeEEEECcCCCEEEEEecCCC-C-CeEEEEEeCCCCeeEEEecCC
Q 001163 543 SRVDYDA------------------------PGHSSTMMAYSADGARLFSCGTNKE-G-ESYLVEWNESEGAVKRTYHGL 596 (1134)
Q Consensus 543 ~~~~~~~------------------------~~~~v~~~~~s~~~~~l~~~~~~~~-~-~~~i~~wd~~~~~~~~~~~~~ 596 (1134)
....+.+ ....-..++|-.||.++++.+.+.. + ...+++|+-+ |....+-...
T Consensus 177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v 255 (928)
T PF04762_consen 177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV 255 (928)
T ss_pred ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC
Confidence 0000000 1123457889999999999886332 2 5789999965 6655544422
Q ss_pred CCCceEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCceeEEEecC--CCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163 597 GKRSVGVVQFDTTKNRFLAAGD---EFMIKFWDMDNVNLLASIDAD--GGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (1134)
Q Consensus 597 ~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 671 (1134)
.+ --..++|-|.|+.+++... ...|.+|.-+ |-.-..+... .....|..+.|++|+..||+...|. |.+|..
T Consensus 256 ~g-Le~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~ 332 (928)
T PF04762_consen 256 DG-LEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTR 332 (928)
T ss_pred CC-ccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEe
Confidence 22 3456899999999998763 3456777643 3222222221 2345789999999999999987665 999988
Q ss_pred cCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccccccc
Q 001163 672 ADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS 751 (1134)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 751 (1134)
.+.+-.++.--...
T Consensus 333 ~NYHWYLKqei~~~------------------------------------------------------------------ 346 (928)
T PF04762_consen 333 SNYHWYLKQEIRFS------------------------------------------------------------------ 346 (928)
T ss_pred eCCEEEEEEEEEcc------------------------------------------------------------------
Confidence 77643333221100
Q ss_pred ceeeecccCCccceeccccCCccccccEEEEEEecC-CceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCC
Q 001163 752 RIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNS-GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSG 830 (1134)
Q Consensus 752 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~ 830 (1134)
....+..+.|+|. ...|...+.+|.+..+++. |++..+
T Consensus 347 -----------------------~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~------------------~~v~~s 385 (928)
T PF04762_consen 347 -----------------------SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA------------------WDVSRS 385 (928)
T ss_pred -----------------------CCCCCCceEECCCCCCEEEEEecCCcEEEEEEE------------------EEEEec
Confidence 1112223566664 3345555555666555432 111111
Q ss_pred cccccCCCCCCCCCCeeEEEEcC-CCCeEEEeeCCeEEEEEccCCe-----EEEEecCCCCCeEEEEEcCCCCcEEEEEe
Q 001163 831 ILMTNDISDTNPEDAVPCFALSK-NDSYVMSASGGKISLFNMMTFK-----TMTTFMPPPPAATFLAFHPQDNNIIAIGM 904 (1134)
Q Consensus 831 ~~~~~~~~~~~h~~~v~~v~~s~-dg~~la~~sdg~i~lwd~~~~~-----~~~~~~~~~~~v~~l~~sp~~~~~la~g~ 904 (1134)
.. .+| |...+++.++.++.+-.+...- +...+. -...|.+++|++ ++..+|+-.
T Consensus 386 ~~------------------~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~ 445 (928)
T PF04762_consen 386 PG------------------SSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-SNSRFAVLT 445 (928)
T ss_pred CC------------------CCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-CCCeEEEEE
Confidence 10 011 2223444444556666654332 112233 356899999999 676799999
Q ss_pred CCCcEEEEEcccceEE--------Eecc----------CccCceEEEEEeeCCCEEEEEeCC---CcEEEEECCCCcccc
Q 001163 905 EDSSIQIYNVRVDEVK--------TKLK----------GHQKRITGLAFSNTLNVLVSSGAD---SQLCVWSTDGWEKQA 963 (1134)
Q Consensus 905 ~dg~i~iwd~~~~~~~--------~~l~----------~h~~~V~~l~~s~d~~~l~s~s~D---g~i~iwd~~~~~~~~ 963 (1134)
.||.|.+|........ ..+. .-...+..++|..+...++....+ ..+.++++...+..
T Consensus 446 ~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~- 524 (928)
T PF04762_consen 446 SDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENS- 524 (928)
T ss_pred CCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCc-
Confidence 9999999986443211 1111 123457888998888777766654 57888887443211
Q ss_pred ceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcccc-eeeccCCCccCEEEEEEccCCC---EEEEE
Q 001163 964 SKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECL-KQFVPREASGPITHATYSCDSQ---SIYVA 1038 (1134)
Q Consensus 964 ~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~-~~~~~~~h~~~v~~~~~s~dg~---~l~s~ 1038 (1134)
.......... ..+..+...++...++. ..+|.+..++....... ..+. . .-.-..++...+.. .++.-
T Consensus 525 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp--~-~c~~~~~~~~~~~~~~~~~~GL 597 (928)
T PF04762_consen 525 ASVESSTEVD----GVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFP--Q-PCPWMEVCQINGSEDKRVLFGL 597 (928)
T ss_pred eeEEEEeccC----ceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCC--C-CCcEEEEEEECCccceeEEEEE
Confidence 1111111111 22444444555543444 67888887666543321 1222 1 11122233232332 34444
Q ss_pred ecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCC
Q 001163 1039 FEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus 1039 s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~ 1102 (1134)
+..|.+++ ++..+ ...+++..+. +.+|+.......+++..+.
T Consensus 598 s~~~~Ly~----n~~~l-------------a~~~tSF~v~-----~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 598 SSNGRLYA----NSRLL-------------ASNCTSFAVT-----DSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred CCCCEEEE----CCEEE-------------ecCCceEEEE-----cCEEEEEecCceEEEEECc
Confidence 44444442 22222 1335555443 4677777778889999998
No 249
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=2.9e-11 Score=138.69 Aligned_cols=225 Identities=16% Similarity=0.181 Sum_probs=144.2
Q ss_pred EEEeecCCCeeEEEEcCCCCeEEEEEeCC--CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163 350 VMTLNQGSAVKSMDFHPVQQILLVVGTNM--GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1134)
Q Consensus 350 ~~~~~h~~~V~~v~fsp~g~~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (1134)
.+...+...+.+.+|||||++|+++...+ ..|.+||+.+++... +....+.+.+.+||
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~~~~~S 248 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNSAPAWS 248 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEEC
Confidence 33445778899999999999775554333 469999999886533 22233456789999
Q ss_pred CCCCEEEE-EeCCCEEEEEEc--cCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEe-CCCeEEEEEC--CCCceeE
Q 001163 428 PDGTLFGV-AYSKHIVHLYTY--HGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDA--VTGTKQY 501 (1134)
Q Consensus 428 pd~~~las-~s~dg~v~iwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-~d~~i~iwd~--~~~~~~~ 501 (1134)
|||+.|+. .+.+|...||.+ .++. .+ .+..|.+.+....|+|||+. |+..+ .++...||.+ .+++...
T Consensus 249 PDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~--l~f~s~~~g~~~Iy~~~~~~g~~~~ 322 (427)
T PRK02889 249 PDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS--IYFTSDRGGAPQIYRMPASGGAAQR 322 (427)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE--EEEEecCCCCcEEEEEECCCCceEE
Confidence 99998874 567777666654 4443 22 35556666778899999994 44333 4556666654 4554322
Q ss_pred EecCCCcCEEEEeccccCCccEEEEecCCC---cEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeE
Q 001163 502 IFEGHESPVYSICPHHKENIQFIFSTATDG---KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY 578 (1134)
Q Consensus 502 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 578 (1134)
+..+........|+ ++|++|+..+.++ .|.+||+.+++.... .. ........|+|||+.|+..+.++ +...
T Consensus 323 -lt~~g~~~~~~~~S--pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-t~-~~~~~~p~~spdg~~l~~~~~~~-g~~~ 396 (427)
T PRK02889 323 -VTFTGSYNTSPRIS--PDGKLLAYISRVGGAFKLYVQDLATGQVTAL-TD-TTRDESPSFAPNGRYILYATQQG-GRSV 396 (427)
T ss_pred -EecCCCCcCceEEC--CCCCEEEEEEccCCcEEEEEEECCCCCeEEc-cC-CCCccCceECCCCCEEEEEEecC-CCEE
Confidence 22122223345564 5567887666544 599999987654432 22 23346789999999999887654 4556
Q ss_pred EEEEeCCCCeeEEEecCCCCCceEEEEEcC
Q 001163 579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDT 608 (1134)
Q Consensus 579 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 608 (1134)
+.+.+. ++.....+..+.. .+...+|+|
T Consensus 397 l~~~~~-~g~~~~~l~~~~g-~~~~p~wsp 424 (427)
T PRK02889 397 LAAVSS-DGRIKQRLSVQGG-DVREPSWGP 424 (427)
T ss_pred EEEEEC-CCCceEEeecCCC-CCCCCccCC
Confidence 777777 4555555544333 455667766
No 250
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.39 E-value=1e-09 Score=116.04 Aligned_cols=345 Identities=11% Similarity=0.129 Sum_probs=205.0
Q ss_pred EEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEE
Q 001163 534 KAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF 613 (1134)
Q Consensus 534 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 613 (1134)
.+|+..+......+....-++..+++||.|.+|++....+ |.+|+-..+..+..+... .|..+.|+|.+++|
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-----V~~~~g~~~~~l~~~~~~---~V~~~~fSP~~kYL 86 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-----VECWGGPSKAKLVRFRHP---DVKYLDFSPNEKYL 86 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhccc-----eEEccccchhheeeeecC---CceecccCccccee
Confidence 3455544444444444555888999999999999875433 999998877655555432 67889999999999
Q ss_pred EEEeCCC---------------eEEEEEcCCCceeEEEecCCCCCCcc-eEEEcCCCcEEEEEECCCcEEEEEccCCcee
Q 001163 614 LAAGDEF---------------MIKFWDMDNVNLLASIDADGGLQASP-CIRFNKEGILLAVSTNDNGIKILANADGIRL 677 (1134)
Q Consensus 614 ~~~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~ 677 (1134)
.+-+..+ .+.+||..+|..+..+.......... -+.|+-+..++|-. -...+.|+++... ..
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n-~~ 164 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDN-IE 164 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCc-cc
Confidence 9876543 48999999999998887553322233 67788777666544 2346777775221 00
Q ss_pred EEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeec
Q 001163 678 LRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLT 757 (1134)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~ 757 (1134)
.+
T Consensus 165 -----~~------------------------------------------------------------------------- 166 (561)
T COG5354 165 -----EH------------------------------------------------------------------------- 166 (561)
T ss_pred -----cC-------------------------------------------------------------------------
Confidence 00
Q ss_pred ccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCC
Q 001163 758 EITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDI 837 (1134)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 837 (1134)
....+ ....|....++|.|. ...+..|. ++.+
T Consensus 167 ------p~~~l------r~~gi~dFsisP~~n-------~~~la~~t----------------------PEk~------- 198 (561)
T COG5354 167 ------PFKNL------RPVGILDFSISPEGN-------HDELAYWT----------------------PEKL------- 198 (561)
T ss_pred ------chhhc------cccceeeEEecCCCC-------CceEEEEc----------------------cccC-------
Confidence 00000 123456666776652 11123331 1000
Q ss_pred CCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEE-----------eCC
Q 001163 838 SDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIG-----------MED 906 (1134)
Q Consensus 838 ~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-----------~~d 906 (1134)
+..+++++|.+..++.+.+-.-....-..+.|.+ .|.+|.+- ...
T Consensus 199 -----------------------~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfge 254 (561)
T COG5354 199 -----------------------NKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGE 254 (561)
T ss_pred -----------------------CCCcEEEEEEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEEeeecccceecc
Confidence 0012233333332222222110111112233333 22222110 123
Q ss_pred CcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEe--CCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEE
Q 001163 907 SSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSG--ADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQ 984 (1134)
Q Consensus 907 g~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 984 (1134)
..++|+++.... +.....-.++|...+|.|+++.+++.+ .+..+.++|+.+.- ..-.++. .-..+.
T Consensus 255 snLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl-----~~~~Pe~------~rNT~~ 322 (561)
T COG5354 255 SNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL-----RFYFPEQ------KRNTIF 322 (561)
T ss_pred ceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccce-----EEecCCc------cccccc
Confidence 468888877333 333335678999999999998877654 68889999998731 2222332 235688
Q ss_pred EcCCCCEEEE-E---eeceEEEEeCCCcccce-eeccCCCccCEEEEEEccCCCEEEEEe------cCCcEEEeecCCCc
Q 001163 985 FHLDQTHLLA-V---HETQIAIYEAPKLECLK-QFVPREASGPITHATYSCDSQSIYVAF------EEGSVGVLTASTLR 1053 (1134)
Q Consensus 985 fs~dg~~l~~-~---~d~~i~iwd~~~~~~~~-~~~~~~h~~~v~~~~~s~dg~~l~s~s------~Dg~i~vwd~~~~~ 1053 (1134)
|||.++++++ + ..|.+.+||....-... .+. ...-+-+.|||||+++.+.. .|..|.|||+....
T Consensus 323 fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~----~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 323 FSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN----GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred ccCcccEEEEecCCccccceEEeccCCceEEEEEee----cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 9999999988 4 34889999988654443 444 23445667999999987665 37889999987654
Q ss_pred c
Q 001163 1054 L 1054 (1134)
Q Consensus 1054 ~ 1054 (1134)
.
T Consensus 399 ~ 399 (561)
T COG5354 399 V 399 (561)
T ss_pred h
Confidence 4
No 251
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.39 E-value=1.5e-12 Score=135.20 Aligned_cols=232 Identities=13% Similarity=0.141 Sum_probs=189.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC
Q 001163 418 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 497 (1134)
Q Consensus 418 ~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~ 497 (1134)
...-..+.++.+|+.|+.|+..|.|..+|..+++....+ . -...|..+.|..+.+ +++. ...+.+.||| ..|
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei---~-v~Etv~Dv~~LHneq--~~AV-AQK~y~yvYD-~~G 200 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI---N-VMETVRDVTFLHNEQ--FFAV-AQKKYVYVYD-NNG 200 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeee---e-hhhhhhhhhhhcchH--HHHh-hhhceEEEec-CCC
Confidence 345678999999999999999999999999998755432 2 335689999998887 4444 4567899999 889
Q ss_pred ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCe
Q 001163 498 TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGES 577 (1134)
Q Consensus 498 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 577 (1134)
..++.++.| ..|..+.|-|.. -+|++++..|.++.-|+..++.+..+....+.+..|+-+|-+..+-+|.. .+
T Consensus 201 tElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nG 273 (545)
T KOG1272|consen 201 TELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NG 273 (545)
T ss_pred cEEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cc
Confidence 999999866 468888887665 67889999999999999999988888888888999999998888877754 55
Q ss_pred EEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEE
Q 001163 578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILL 657 (1134)
Q Consensus 578 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l 657 (1134)
+|.+|...+.+++..+..|.. +|.++++.++|.++++.|.|..++|||++.-..+.++.. ......+++|..| +|
T Consensus 274 tVSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t---p~~a~~ls~Sqkg-lL 348 (545)
T KOG1272|consen 274 TVSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT---PHPASNLSLSQKG-LL 348 (545)
T ss_pred eEEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeec---CCCcccccccccc-ce
Confidence 799999999999999999987 999999999999999999999999999998887766654 2245678888655 44
Q ss_pred EEEECCCcEEEEE
Q 001163 658 AVSTNDNGIKILA 670 (1134)
Q Consensus 658 ~~~~~dg~i~iw~ 670 (1134)
| .+....+.||.
T Consensus 349 A-~~~G~~v~iw~ 360 (545)
T KOG1272|consen 349 A-LSYGDHVQIWK 360 (545)
T ss_pred e-eecCCeeeeeh
Confidence 4 34445888995
No 252
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=7.2e-11 Score=120.63 Aligned_cols=273 Identities=11% Similarity=0.114 Sum_probs=190.2
Q ss_pred cCCCeeEEEEcCCCCeEEEEEe-CCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGT-NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 433 (1134)
....|++++|--+++.=+..+. .|-.+....+........ +|+++ .....+.+|..++.. ...|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~--dg~L 118 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA--DGTL 118 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc--CCEE
Confidence 4567788888877654333443 555666666655544332 12221 123445566666653 3467
Q ss_pred EEEeCCCEEEEEEccCCceee-eeeeeecCCCCEEEEEEecCCCceEEEEEeCC--CeEEEEECCCCceeEEecC-----
Q 001163 434 GVAYSKHIVHLYTYHGGDELR-NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED--RVIKVWDAVTGTKQYIFEG----- 505 (1134)
Q Consensus 434 as~s~dg~v~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d--~~i~iwd~~~~~~~~~~~~----- 505 (1134)
.+|-.+|.+.+|..+.+..-. ....+..+ ..+..|.-++.... ++++||.. ..+.|||+.+.+.+.+-+.
T Consensus 119 itc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~ 196 (412)
T KOG3881|consen 119 ITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDR 196 (412)
T ss_pred EEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCcc
Confidence 777889999999998543111 11123333 45677777776665 67779998 8999999998866654332
Q ss_pred --CCc--CEEEEeccccCCccEEEEecCCCcEEEEecCCCC-ceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEE
Q 001163 506 --HES--PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG-SRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 580 (1134)
Q Consensus 506 --h~~--~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 580 (1134)
-.- .++++.|.+..+...|++++.-+.|++||...+. +...+....++++++...|+++.++++.. .+.+.
T Consensus 197 L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~ 272 (412)
T KOG3881|consen 197 LGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLA 272 (412)
T ss_pred ccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhh
Confidence 122 3455666655446899999999999999998654 34456667789999999999999999854 44599
Q ss_pred EEeCCCCeeEEE-ecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC
Q 001163 581 EWNESEGAVKRT-YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (1134)
Q Consensus 581 ~wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 652 (1134)
.+|.+.++.... +.+..+ .++++..+|.+.+++++|-|+.|+|+|..+.+++...-. ....+++.+.+
T Consensus 273 ~FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv---Ks~lt~il~~~ 341 (412)
T KOG3881|consen 273 KFDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV---KSRLTFILLRD 341 (412)
T ss_pred eecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh---hccccEEEecC
Confidence 999999998887 666665 899999999999999999999999999999777665533 22455665554
No 253
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1.4e-10 Score=133.99 Aligned_cols=225 Identities=12% Similarity=0.042 Sum_probs=147.6
Q ss_pred EEEeecCCCeeEEEEcCCCCeEEEEEe--CCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163 350 VMTLNQGSAVKSMDFHPVQQILLVVGT--NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1134)
Q Consensus 350 ~~~~~h~~~V~~v~fsp~g~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (1134)
.....+...+.+.+|||||++|+.+.. .+..|.+||+.+++... +..+.+.+.+.+||
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g~~~~~~~S 254 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPGMTFAPRFS 254 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCCcccCcEEC
Confidence 333457889999999999997765543 34689999998886432 34456678899999
Q ss_pred CCCCEEEE-EeCCCE--EEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEe-CC--CeEEEEECCCCceeE
Q 001163 428 PDGTLFGV-AYSKHI--VHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-ED--RVIKVWDAVTGTKQY 501 (1134)
Q Consensus 428 pd~~~las-~s~dg~--v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-~d--~~i~iwd~~~~~~~~ 501 (1134)
|||+.|+. .+.++. |.+||+.+++.. .+..+........|+|||+. |+..+ .+ ..|.+||+.+++..
T Consensus 255 PDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d~~g~~~~- 327 (435)
T PRK05137 255 PDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMNADGSNPR- 327 (435)
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEECCCCCeE-
Confidence 99998764 455554 777898887643 35556667788999999994 55444 33 36888897766543
Q ss_pred EecCCCcCEEEEeccccCCccEEEEecCC---CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCC--
Q 001163 502 IFEGHESPVYSICPHHKENIQFIFSTATD---GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGE-- 576 (1134)
Q Consensus 502 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~-- 576 (1134)
.+..+...+....|++ +|+.|+..+.+ ..|.+||+..... ..+. ....+....|+|||+.|+..+.+....
T Consensus 328 ~lt~~~~~~~~~~~Sp--dG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~ 403 (435)
T PRK05137 328 RISFGGGRYSTPVWSP--RGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGA 403 (435)
T ss_pred EeecCCCcccCeEECC--CCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCc
Confidence 3433444555666754 55777665543 3577888754433 2222 233567889999999998776543221
Q ss_pred eEEEEEeCCCCeeEEEecCCCCCceEEEEEcC
Q 001163 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT 608 (1134)
Q Consensus 577 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 608 (1134)
..++++|+..+.. ..+.. . ..+...+|+|
T Consensus 404 ~~L~~~dl~g~~~-~~l~~-~-~~~~~p~Wsp 432 (435)
T PRK05137 404 PKLYTVDLTGRNE-REVPT-P-GDASDPAWSP 432 (435)
T ss_pred ceEEEEECCCCce-EEccC-C-CCccCcccCC
Confidence 4688889876554 33332 1 1345556665
No 254
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.36 E-value=2.2e-10 Score=114.73 Aligned_cols=193 Identities=16% Similarity=0.271 Sum_probs=123.1
Q ss_pred CCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc-----eeEEecCCC------------cCEEEEeccccCCccEEE
Q 001163 463 VGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-----KQYIFEGHE------------SPVYSICPHHKENIQFIF 525 (1134)
Q Consensus 463 ~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~-----~~~~~~~h~------------~~v~~~~~~~~~~~~~l~ 525 (1134)
..-|.++.|...|. +|+||..+|.|.++.-.... ....++.|. ..|..+.|....+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 34688999999999 89999999999998633221 223444443 357778888888888888
Q ss_pred EecCCCcEEEEecCCCCceee-----ecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCc
Q 001163 526 STATDGKIKAWLYDNLGSRVD-----YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS 600 (1134)
Q Consensus 526 s~s~dg~i~vwd~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 600 (1134)
..+.|.+|++|.+........ .......+.++.. .+.+..+. +. ...+.+.+...+...
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~------p~~~~~~~-----~v-----ea~prRv~aNaHtyh 166 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL------PVEGRHDL-----EV-----EASPRRVYANAHTYH 166 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeec------eeeccccc-----ee-----eeeeeeeccccceeE
Confidence 899999999998875444331 0111112222221 01110000 00 123445565555558
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-eeEEEecCCC-----CCCcceEEEcCC-CcEEEEEECCCcEEEEEccC
Q 001163 601 VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN-LLASIDADGG-----LQASPCIRFNKE-GILLAVSTNDNGIKILANAD 673 (1134)
Q Consensus 601 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~-----~~~v~~v~~sp~-~~~l~~~~~dg~i~iw~~~~ 673 (1134)
+.++.++.|+..++++. |=.|.+|+++--. .......... ..-|++..|+|. -++++-.+..|+|++-|+..
T Consensus 167 iNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 167 INSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred eeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 99999999998888764 6789999987432 2222221111 224778889994 46777788899999998764
Q ss_pred C
Q 001163 674 G 674 (1134)
Q Consensus 674 ~ 674 (1134)
.
T Consensus 246 ~ 246 (433)
T KOG1354|consen 246 S 246 (433)
T ss_pred h
Confidence 3
No 255
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.35 E-value=5.6e-11 Score=118.98 Aligned_cols=155 Identities=12% Similarity=0.226 Sum_probs=108.2
Q ss_pred EEEEEcCCCCcEEEEEeC----------CCcEEEEEccc-ceEEEeccC-ccCceEEEEEeeCCCEEEEE--eCCCcEEE
Q 001163 888 TFLAFHPQDNNIIAIGME----------DSSIQIYNVRV-DEVKTKLKG-HQKRITGLAFSNTLNVLVSS--GADSQLCV 953 (1134)
Q Consensus 888 ~~l~~sp~~~~~la~g~~----------dg~i~iwd~~~-~~~~~~l~~-h~~~V~~l~~s~d~~~l~s~--s~Dg~i~i 953 (1134)
..+.|++ .|.+|++-.. -+...+|.++. +..+..+.- ..++|.+++|+|+|+.++.. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4567888 5655544332 12455555532 233444433 34579999999999987654 45779999
Q ss_pred EECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEe----eceEEEEeCCCcccceeeccCCCccCEEEEEEc
Q 001163 954 WSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVH----ETQIAIYEAPKLECLKQFVPREASGPITHATYS 1029 (1134)
Q Consensus 954 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~----d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s 1029 (1134)
||++. + ....... ..+..+.|||+|++|+++. .|.|.+||+.+.+.+.... ...++.++||
T Consensus 88 yd~~~-~----~i~~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~Ws 152 (194)
T PF08662_consen 88 YDVKG-K----KIFSFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWS 152 (194)
T ss_pred EcCcc-c----EeEeecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEc
Confidence 99973 2 1222222 2467899999999999842 4789999999888887765 3457899999
Q ss_pred cCCCEEEEEec------CCcEEEeecCCCcceeecC
Q 001163 1030 CDSQSIYVAFE------EGSVGVLTASTLRLRCRIN 1059 (1134)
Q Consensus 1030 ~dg~~l~s~s~------Dg~i~vwd~~~~~~~~~~~ 1059 (1134)
|||++|++++. |+.++||+.. |+.+.+..
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 99999998875 7889999985 66655443
No 256
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.35 E-value=4.3e-09 Score=113.10 Aligned_cols=204 Identities=10% Similarity=0.083 Sum_probs=124.1
Q ss_pred EEEEcCCCCeEEEee---CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc-ceEE-E-
Q 001163 848 CFALSKNDSYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-DEVK-T- 921 (1134)
Q Consensus 848 ~v~~s~dg~~la~~s---dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~-~~~~-~- 921 (1134)
.++++|||++|.+.. ++.|.+.|+.+++.+.++.-.. ...-...++ ++.+ +-+.||......+.+ |+.. .
T Consensus 109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred eEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-CccE--EEeecCceEEEEecCCCceEEee
Confidence 566777777777654 4678888888888777766422 111122221 1111 112233333322221 1111 1
Q ss_pred --eccCccCceE-EEEEee-CCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCC----CCCCCceEEEEcCCCCEEE
Q 001163 922 --KLKGHQKRIT-GLAFSN-TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRT----ASALADTRVQFHLDQTHLL 993 (1134)
Q Consensus 922 --~l~~h~~~V~-~l~~s~-d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~l~fs~dg~~l~ 993 (1134)
.+..-..++. .-.|++ +|+++....+ |+|.+-|+...+.............. -......-+++++|++.++
T Consensus 185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 1111001100 004566 8888887776 99999997665433323332221110 0114455699999999998
Q ss_pred EEe---e--------ceEEEEeCCCcccceeeccCCCccCEEEEEEccCCC-EEEEEe-cCCcEEEeecCCCcceeecC
Q 001163 994 AVH---E--------TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQ-SIYVAF-EEGSVGVLTASTLRLRCRIN 1059 (1134)
Q Consensus 994 ~~~---d--------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s-~Dg~i~vwd~~~~~~~~~~~ 1059 (1134)
+.. . +.|.++|..+++.+..+.. ...+..+++||||+ +|++.+ .++.|.++|+.+++.+..+.
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 832 1 5799999999999998875 35899999999999 887666 57889999999999988773
No 257
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.34 E-value=3e-11 Score=120.86 Aligned_cols=147 Identities=18% Similarity=0.295 Sum_probs=104.8
Q ss_pred eeEeCCCCCCcccccC---CCC---------------CceeEEEe--ecCCCeeEEEEcCCCCeEEEE-EeCCCcEEEEe
Q 001163 327 PVAYTPQSLGQSSYST---DDL---------------PKTVVMTL--NQGSAVKSMDFHPVQQILLVV-GTNMGDVMLWE 385 (1134)
Q Consensus 327 ~~~~s~~~~~l~~~~~---d~~---------------~~~~~~~~--~h~~~V~~v~fsp~g~~lla~-gs~dg~v~iwd 385 (1134)
.+.|+|+|.+|+.... |.. .......+ ...+.|.+++|+|+|+.++++ |..++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 4678899988665533 111 11222233 345579999999999987544 56778999999
Q ss_pred cCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeC---CCEEEEEEccCCceeeeeeeeecC
Q 001163 386 VGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS---KHIVHLYTYHGGDELRNHLEIEAH 462 (1134)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~---dg~v~iwd~~~~~~~~~~~~l~~h 462 (1134)
++ ++.+.. -+...++.+.|||+|++||+++. .|.|.+||+++.+.+. .. .|
T Consensus 90 ~~-~~~i~~---------------------~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~---~~-~~ 143 (194)
T PF08662_consen 90 VK-GKKIFS---------------------FGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS---TF-EH 143 (194)
T ss_pred Cc-ccEeEe---------------------ecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee---cc-cc
Confidence 96 333321 13567889999999999999874 4679999999877654 22 24
Q ss_pred CCCEEEEEEecCCCceEEEEEe------CCCeEEEEECCCCceeEEe
Q 001163 463 VGSVNDLAFSYPNKQLSVVTCG------EDRVIKVWDAVTGTKQYIF 503 (1134)
Q Consensus 463 ~~~V~~v~~s~~~~~~~l~s~s------~d~~i~iwd~~~~~~~~~~ 503 (1134)
. .++.++|+|||+ +++++. .|+.++||+. +|+.+...
T Consensus 144 ~-~~t~~~WsPdGr--~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 144 S-DATDVEWSPDGR--YLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred C-cEEEEEEcCCCC--EEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 3 478999999999 667665 3789999996 57776544
No 258
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=3.1e-09 Score=108.73 Aligned_cols=255 Identities=12% Similarity=0.187 Sum_probs=173.8
Q ss_pred CCCCeeEEEEcCCCCeEEEee-C---CeEEEEEccC--CeEE--EEecCCCCCeEEEEEcCCCCcEEEEEeC-CCcEEEE
Q 001163 842 PEDAVPCFALSKNDSYVMSAS-G---GKISLFNMMT--FKTM--TTFMPPPPAATFLAFHPQDNNIIAIGME-DSSIQIY 912 (1134)
Q Consensus 842 h~~~v~~v~~s~dg~~la~~s-d---g~i~lwd~~~--~~~~--~~~~~~~~~v~~l~~sp~~~~~la~g~~-dg~i~iw 912 (1134)
.....+-++++|+++.|.++. + |.|..|.++. |++. ........+-+-+++++ ++++|+++.. -|.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 667788999999999888875 3 5677777654 5433 22222333448899999 8888888865 4799999
Q ss_pred Eccc-ceEEE--eccCccCc----------eEEEEEeeCCCEEEEEe--CCCcEEEEECCCCccccceeeeecCCCCCCC
Q 001163 913 NVRV-DEVKT--KLKGHQKR----------ITGLAFSNTLNVLVSSG--ADSQLCVWSTDGWEKQASKFLTIPNGRTASA 977 (1134)
Q Consensus 913 d~~~-~~~~~--~l~~h~~~----------V~~l~~s~d~~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 977 (1134)
.+.. |.+.. ....|.+. +-...|.|++++|++.+ .|. |.+|+++.++........+..|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G----- 190 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG----- 190 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence 9865 43321 12234444 77889999999999874 454 9999999877665444444332
Q ss_pred CCceEEEEcCCCCEEEEE--eeceEEEEeCCCc-ccceeec-----cCCC--ccCEEEEEEccCCCEEEEEec-CCcEEE
Q 001163 978 LADTRVQFHLDQTHLLAV--HETQIAIYEAPKL-ECLKQFV-----PREA--SGPITHATYSCDSQSIYVAFE-EGSVGV 1046 (1134)
Q Consensus 978 ~~v~~l~fs~dg~~l~~~--~d~~i~iwd~~~~-~~~~~~~-----~~~h--~~~v~~~~~s~dg~~l~s~s~-Dg~i~v 1046 (1134)
.+.+.+.|+|++++..+. -+++|.+|..+.. ..+..+. +... ......|.+++||++|.++.. ...|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 567999999999998884 6799999998873 1111111 0111 456778999999999987764 357888
Q ss_pred eecCCCcc-eeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCC-cEEEEeCCCCCCCccC
Q 001163 1047 LTASTLRL-RCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDG-GVYIIEPLEAEGRWGT 1110 (1134)
Q Consensus 1047 wd~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg-~v~vW~~~~~~~~~~~ 1110 (1134)
|.+....- +..+. .. .+....+-.+.++| ++++|+++..|+ +|.++.++...|+...
T Consensus 271 f~V~~~~g~L~~~~---~~---~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 271 FSVDPDGGKLELVG---IT---PTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EEEcCCCCEEEEEE---Ee---ccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 88765422 22222 11 12334566678888 577777777654 7999999988876554
No 259
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.32 E-value=1.7e-10 Score=115.47 Aligned_cols=257 Identities=13% Similarity=0.212 Sum_probs=173.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCc--eeeeeeeeecCC------------CCEEEEEEecCCCceEEEEE
Q 001163 418 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD--ELRNHLEIEAHV------------GSVNDLAFSYPNKQLSVVTC 483 (1134)
Q Consensus 418 ~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~--~~~~~~~l~~h~------------~~V~~v~~s~~~~~~~l~s~ 483 (1134)
.+-|.++.|..+|.+||+|..+|.|.++.-.... ...-...++.|. ..|..+.|.+++..-.++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4578999999999999999999999999654321 222233444454 45889999998876577788
Q ss_pred eCCCeEEEEECCCCcee-----------------------------------EEe-cCCCcCEEEEeccccCCccEEEEe
Q 001163 484 GEDRVIKVWDAVTGTKQ-----------------------------------YIF-EGHESPVYSICPHHKENIQFIFST 527 (1134)
Q Consensus 484 s~d~~i~iwd~~~~~~~-----------------------------------~~~-~~h~~~v~~~~~~~~~~~~~l~s~ 527 (1134)
..|.+|++|.+...... +.+ .+|..-|++|.++ .|+..++++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N--sD~Et~lSA 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN--SDKETFLSA 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec--CccceEeec
Confidence 89999999987532110 111 2577788888774 455667665
Q ss_pred cCCCcEEEEecCCCCceee---ecCCC-----CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeE----EEecC
Q 001163 528 ATDGKIKAWLYDNLGSRVD---YDAPG-----HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK----RTYHG 595 (1134)
Q Consensus 528 s~dg~i~vwd~~~~~~~~~---~~~~~-----~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~----~~~~~ 595 (1134)
.|=.|.+|+++-...-.. +..+. .-|++..|+|....++.-+. ..+.|++-|++...+- ..+..
T Consensus 183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS---SKGtIrLcDmR~~aLCd~hsKlfEe 258 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS---SKGTIRLCDMRQSALCDAHSKLFEE 258 (433)
T ss_pred -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec---CCCcEEEeechhhhhhcchhhhhcc
Confidence 478899999875443332 22222 15778889996544433332 2446999999843221 11111
Q ss_pred CCC-----------CceEEEEEcCCCCEEEEEeCCCeEEEEEc-CCCceeEEEecCCC----------CCCc---ceEEE
Q 001163 596 LGK-----------RSVGVVQFDTTKNRFLAAGDEFMIKFWDM-DNVNLLASIDADGG----------LQAS---PCIRF 650 (1134)
Q Consensus 596 ~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~----------~~~v---~~v~~ 650 (1134)
..+ ..|..+.|+++|+++++-+. -+|++||+ ...+++.+++.|.. ...| ..++|
T Consensus 259 pedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~ 337 (433)
T KOG1354|consen 259 PEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSW 337 (433)
T ss_pred ccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEE
Confidence 111 24677899999999988654 68999999 45667777665432 1122 36889
Q ss_pred cCCCcEEEEEECCCcEEEEEccCCceeEEEe
Q 001163 651 NKEGILLAVSTNDNGIKILANADGIRLLRTV 681 (1134)
Q Consensus 651 sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 681 (1134)
+-++.++++|+....+++++...|.....++
T Consensus 338 sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl 368 (433)
T KOG1354|consen 338 SGNDSYVMTGSYNNVFRVFNLARGSKEDFTL 368 (433)
T ss_pred cCCcceEecccccceEEEecCCCCcceeecc
Confidence 9999999999999999999987774444433
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=8.7e-10 Score=126.74 Aligned_cols=223 Identities=13% Similarity=0.066 Sum_probs=141.5
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCC---CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCe--
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV-- 488 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~d---g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~-- 488 (1134)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 34467789999999999999887543 268899998876422 2222333457899999995 3345566664
Q ss_pred EEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEec-CCCc--EEEEecCCCCceeeecCCCCCeeEEEECcCCCE
Q 001163 489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDGK--IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGAR 565 (1134)
Q Consensus 489 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 565 (1134)
|.+||+.+++.. .+..+.......+|++ ||+.|+..+ .++. |.++|+.+++.. .+..........+|+|||++
T Consensus 288 Iy~~dl~tg~~~-~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 288 IYVVDIATKALT-RITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRS 363 (448)
T ss_pred EEEEECCCCCeE-ECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCE
Confidence 788898877654 4444555556677755 446665443 4454 555566554432 22223333445789999999
Q ss_pred EEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeC-CC--eEEEEEcCCCceeEEEecCCCC
Q 001163 566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD-EF--MIKFWDMDNVNLLASIDADGGL 642 (1134)
Q Consensus 566 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~ 642 (1134)
++..+.. .+...|.++|+.+++........ ......|+|+|+.|+..+. +| .+++++. +|.....+... .
T Consensus 364 l~~~~~~-~g~~~I~~~dl~~g~~~~lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~--~ 436 (448)
T PRK04792 364 MIMVNRT-NGKFNIARQDLETGAMQVLTSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAG--Q 436 (448)
T ss_pred EEEEEec-CCceEEEEEECCCCCeEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCC--C
Confidence 9887654 33456888999888654322221 1223579999998887663 33 3777787 45555656543 3
Q ss_pred CCcceEEEcC
Q 001163 643 QASPCIRFNK 652 (1134)
Q Consensus 643 ~~v~~v~~sp 652 (1134)
..+...+|+|
T Consensus 437 g~~~~p~Wsp 446 (448)
T PRK04792 437 GEVKSPAWSP 446 (448)
T ss_pred CCcCCCccCC
Confidence 3566778876
No 261
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=2.6e-09 Score=113.90 Aligned_cols=357 Identities=10% Similarity=0.145 Sum_probs=207.3
Q ss_pred EEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCE
Q 001163 533 IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNR 612 (1134)
Q Consensus 533 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 612 (1134)
...|+..............=.-+-+.|||.|.+|++-...| |.+|--.+...++.|... .+.-+.|||..+|
T Consensus 192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~G-----I~lWGG~~f~r~~RF~Hp---~Vq~idfSP~EkY 263 (698)
T KOG2314|consen 192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQG-----IALWGGESFDRIQRFYHP---GVQFIDFSPNEKY 263 (698)
T ss_pred EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEeccc-----eeeecCccHHHHHhccCC---CceeeecCCccce
Confidence 44676544322222111122446789999999999987544 999987776666666532 5778999999999
Q ss_pred EEEEeC-----------CCeEEEEEcCCCceeEEEecCCC-CCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEE
Q 001163 613 FLAAGD-----------EFMIKFWDMDNVNLLASIDADGG-LQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRT 680 (1134)
Q Consensus 613 l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 680 (1134)
|++-+. ...++|||+.+|.....+..... ...-.-..||.|++++|.... ..|.||+...- ..
T Consensus 264 LVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf----~l 338 (698)
T KOG2314|consen 264 LVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSF----ML 338 (698)
T ss_pred EEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCce----ee
Confidence 998652 25799999999998888765322 223346789999999998776 47888875432 11
Q ss_pred eccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccC
Q 001163 681 VESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEIT 760 (1134)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~ 760 (1134)
+...+
T Consensus 339 ld~Ks--------------------------------------------------------------------------- 343 (698)
T KOG2314|consen 339 LDKKS--------------------------------------------------------------------------- 343 (698)
T ss_pred ecccc---------------------------------------------------------------------------
Confidence 11100
Q ss_pred CccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCC
Q 001163 761 EPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDT 840 (1134)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 840 (1134)
+ .-..|..+.|+|.+..|+.-.. ++..
T Consensus 344 -------l------ki~gIr~FswsP~~~llAYwtp-------------------------------e~~~--------- 370 (698)
T KOG2314|consen 344 -------L------KISGIRDFSWSPTSNLLAYWTP-------------------------------ETNN--------- 370 (698)
T ss_pred -------c------CCccccCcccCCCcceEEEEcc-------------------------------cccC---------
Confidence 0 1234566777887654442211 1100
Q ss_pred CCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCC-CCcEEEEEeCCCcEEEEEcccceE
Q 001163 841 NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ-DNNIIAIGMEDSSIQIYNVRVDEV 919 (1134)
Q Consensus 841 ~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~-~~~~la~g~~dg~i~iwd~~~~~~ 919 (1134)
....++-+. -|.++.| .+..++++.++++...- .+.-.|+..... .++ +++.--.+.|+.+.....
T Consensus 371 -~parvtL~e-vPs~~~i-----Rt~nlfnVsDckLhWQk---~gdyLcvkvdR~tK~~---~~g~f~n~eIfrireKdI 437 (698)
T KOG2314|consen 371 -IPARVTLME-VPSKREI-----RTKNLFNVSDCKLHWQK---SGDYLCVKVDRHTKSK---VKGQFSNLEIFRIREKDI 437 (698)
T ss_pred -CcceEEEEe-cCcccee-----eeccceeeeccEEEecc---CCcEEEEEEEeecccc---ccceEeeEEEEEeeccCC
Confidence 011111111 1333322 12234444443333221 222223222210 000 122222466776665443
Q ss_pred EEeccCccCceEEEEEeeCCCEEEEEeC---CCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-
Q 001163 920 KTKLKGHQKRITGLAFSNTLNVLVSSGA---DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV- 995 (1134)
Q Consensus 920 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~- 995 (1134)
.-....-...|...+|-|.|..+++-+. ..++.+|.+++.... ...+..... ...+.+.|||.|++++++
T Consensus 438 pve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~-~~lVk~~dk-----~~~N~vfwsPkG~fvvva~ 511 (698)
T KOG2314|consen 438 PVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK-PSLVKELDK-----KFANTVFWSPKGRFVVVAA 511 (698)
T ss_pred CceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc-hhhhhhhcc-----cccceEEEcCCCcEEEEEE
Confidence 2222224567889999999988877554 357899988852211 222222222 236889999999999883
Q ss_pred ---eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEec------CCcEEEeecCC
Q 001163 996 ---HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFE------EGSVGVLTAST 1051 (1134)
Q Consensus 996 ---~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~------Dg~i~vwd~~~ 1051 (1134)
..|.+.+||.....+...-.+ . ....+.+.|.|.|+|++|++. |.-.++|+.+.
T Consensus 512 l~s~~g~l~F~D~~~a~~k~~~~~-e-h~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 512 LVSRRGDLEFYDTDYADLKDTASP-E-HFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred ecccccceEEEecchhhhhhccCc-c-ccccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 578999999985333322221 2 345678899999999999885 44567777764
No 262
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.31 E-value=2.5e-08 Score=111.09 Aligned_cols=246 Identities=13% Similarity=0.181 Sum_probs=160.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeC----CCEEEEEEccCC-ceeeeeeeeecCCCCEEEEEEecCCCceEEEEEe-CCCeEEE
Q 001163 418 TASVNRVMWSPDGTLFGVAYS----KHIVHLYTYHGG-DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKV 491 (1134)
Q Consensus 418 ~~~V~~l~~spd~~~las~s~----dg~v~iwd~~~~-~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-~d~~i~i 491 (1134)
......++++|++++|.+... ++.|..|++... ..+...............++++|+++ +|+++. .+|+|.+
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~--~l~vany~~g~v~v 113 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGR--FLYVANYGGGSVSV 113 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSS--EEEEEETTTTEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCC--EEEEEEccCCeEEE
Confidence 346677999999999999876 579999998875 33443334443445667899999999 455554 5899999
Q ss_pred EECCC-CceeEE---ec----------CCCcCEEEEeccccCCccEEEEec-CCCcEEEEecCCCCcee----ee-cCCC
Q 001163 492 WDAVT-GTKQYI---FE----------GHESPVYSICPHHKENIQFIFSTA-TDGKIKAWLYDNLGSRV----DY-DAPG 551 (1134)
Q Consensus 492 wd~~~-~~~~~~---~~----------~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~----~~-~~~~ 551 (1134)
+++.. |..... +. .......++.++| +++++++.. ....|.+|+++...... .+ ...+
T Consensus 114 ~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p--dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G 191 (345)
T PF10282_consen 114 FPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP--DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG 191 (345)
T ss_dssp EEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T--TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT
T ss_pred EEccCCcccceeeeecccCCCCCcccccccccceeEEECC--CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC
Confidence 99987 443322 21 1234466777754 456666543 34579999998765222 12 2344
Q ss_pred CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC--CCe--eEEEecCC----CC-CceEEEEEcCCCCEEEEEe-CCCe
Q 001163 552 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNES--EGA--VKRTYHGL----GK-RSVGVVQFDTTKNRFLAAG-DEFM 621 (1134)
Q Consensus 552 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~--~~~~~~~~----~~-~~v~~~~~~~~~~~l~~~~-~dg~ 621 (1134)
..-+.++|+|+++++++.... ...|.++++. ++. .+...... .. .....+.++||+++|+++. .++.
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e~---s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s 268 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNEL---SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS 268 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETT---TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE
T ss_pred CCCcEEEEcCCcCEEEEecCC---CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE
Confidence 577899999999999887642 4457777766 443 23333221 11 1467899999999988877 6788
Q ss_pred EEEEEcC--CCce--eEEEecCCCCCCcceEEEcCCCcEEEEEE-CCCcEEEEEcc
Q 001163 622 IKFWDMD--NVNL--LASIDADGGLQASPCIRFNKEGILLAVST-NDNGIKILANA 672 (1134)
Q Consensus 622 i~iwd~~--~~~~--~~~~~~~~~~~~v~~v~~sp~~~~l~~~~-~dg~i~iw~~~ 672 (1134)
|.+|+++ ++++ +..+... ......++++|+|++|+++. .++.|.+|++.
T Consensus 269 I~vf~~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 269 ISVFDLDPATGTLTLVQTVPTG--GKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEEECTTTTTEEEEEEEEES--SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEecCCCceEEEEEEeCC--CCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 9999984 3333 3333332 22468999999999998887 46799999875
No 263
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=2.2e-10 Score=117.20 Aligned_cols=245 Identities=10% Similarity=0.126 Sum_probs=179.9
Q ss_pred CCCCEEEEEEcCCCC--EEEEEeCCCEEEEEEccCCceeeee---eeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEE
Q 001163 417 YTASVNRVMWSPDGT--LFGVAYSKHIVHLYTYHGGDELRNH---LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (1134)
Q Consensus 417 h~~~V~~l~~spd~~--~las~s~dg~v~iwd~~~~~~~~~~---~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i 491 (1134)
....|..++|.-|++ .+...+.|..+..+++......... .......++|..++.. || .|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEE
Confidence 456788888887654 4555556777777777665543321 1233456677777765 44 5899999999999
Q ss_pred EECCCCc----eeEEecCCCcCEEEEeccccCCccEEEEecCC--CcEEEEecCCCCceeeecCCC---------CCeeE
Q 001163 492 WDAVTGT----KQYIFEGHESPVYSICPHHKENIQFIFSTATD--GKIKAWLYDNLGSRVDYDAPG---------HSSTM 556 (1134)
Q Consensus 492 wd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~~---------~~v~~ 556 (1134)
|..+.+. .+..+..+ .++..+.-++.. -.++++|+.. ..+.+||+...+.++.-.... -.+++
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~-p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDTD-PYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCCC-CceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 9987443 23333333 345555443322 2577779998 889999998775444322111 14678
Q ss_pred EEECcC--CCEEEEEecCCCCCeEEEEEeCCCC-eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcee
Q 001163 557 MAYSAD--GARLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL 633 (1134)
Q Consensus 557 ~~~s~~--~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 633 (1134)
+.|-+. ...+++++. -+.+++||.+.+ +++..|..... ++.++...|+++++++|..-|.+..+|.+.++..
T Consensus 208 i~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~E~-~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFLEN-PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred ceecCCCCCceEEEEec----ceeEEEecCcccCcceeEeccccC-cceeeeecCCCcEEEEecccchhheecccCceee
Confidence 888887 788998864 557999999876 56777776665 8999999999999999999999999999999988
Q ss_pred EE-EecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 634 AS-IDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 634 ~~-~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
.. +. +..+.+.++..+|.++++++++-|+.+||+|+.+.
T Consensus 283 g~~~k--g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 283 GCGLK--GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ccccC--CccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 77 55 34678999999999999999999999999999885
No 264
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=1.4e-09 Score=125.99 Aligned_cols=222 Identities=13% Similarity=0.080 Sum_probs=142.1
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCC---CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCC--eE
Q 001163 415 SDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VI 489 (1134)
Q Consensus 415 ~~h~~~V~~l~~spd~~~las~s~d---g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i 489 (1134)
..+...+...+|||||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .|
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~I 269 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPEI 269 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCceE
Confidence 4567789999999999999887644 369999999886432 3333445567899999995 333555555 68
Q ss_pred EEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEec-CCC--cEEEEecCCCCceeeecCCCCCeeEEEECcCCCEE
Q 001163 490 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDG--KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARL 566 (1134)
Q Consensus 490 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 566 (1134)
.+||+.+++.. .+..+........|++ ||+.|+..+ .++ .|.++++..++... +...........|+|||+.+
T Consensus 270 y~~d~~~~~~~-~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 270 YVMDLASRQLS-RVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEECCCCCeE-EcccCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 88899887654 3544555555566654 456555444 444 46666766554322 22222334467899999999
Q ss_pred EEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCceeEEEecCCCCC
Q 001163 567 FSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE---FMIKFWDMDNVNLLASIDADGGLQ 643 (1134)
Q Consensus 567 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 643 (1134)
+...... +...|.+||+.+++........ ......|+|+|+.++..+.+ ..|++++... .....+... ..
T Consensus 346 ~~~~~~~-~~~~l~~~dl~tg~~~~lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~--~g 418 (430)
T PRK00178 346 VMVHRQD-GNFHVAAQDLQRGSVRILTDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTA--QG 418 (430)
T ss_pred EEEEccC-CceEEEEEECCCCCEEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCC--CC
Confidence 8876532 3556999999988654332221 12245899999998877643 3577777754 333344332 23
Q ss_pred CcceEEEcC
Q 001163 644 ASPCIRFNK 652 (1134)
Q Consensus 644 ~v~~v~~sp 652 (1134)
.+...+|+|
T Consensus 419 ~~~~p~ws~ 427 (430)
T PRK00178 419 EVREPSWSP 427 (430)
T ss_pred CcCCCccCC
Confidence 456667776
No 265
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=1.9e-09 Score=122.73 Aligned_cols=227 Identities=13% Similarity=0.089 Sum_probs=140.4
Q ss_pred ccCCCCEEEEEEcCCCCEEE---EEeCC--CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC----
Q 001163 415 SDYTASVNRVMWSPDGTLFG---VAYSK--HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE---- 485 (1134)
Q Consensus 415 ~~h~~~V~~l~~spd~~~la---s~s~d--g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~---- 485 (1134)
......+..-+|||||+.++ +...+ ..|.+.++.+++..+ +....+.....+|||||+.+ +++...
T Consensus 181 t~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~~ 255 (428)
T PRK01029 181 TQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKLL-AFISDRYGNP 255 (428)
T ss_pred ccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCEE-EEEECCCCCc
Confidence 34555677889999998532 34333 357888998876432 33344455678999999952 333322
Q ss_pred CCeEEEEECCCC---ceeEEecCCCcCEEEEeccccCCccEEEEec-CCCcEEEEecC--CC-CceeeecCCCCCeeEEE
Q 001163 486 DRVIKVWDAVTG---TKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDGKIKAWLYD--NL-GSRVDYDAPGHSSTMMA 558 (1134)
Q Consensus 486 d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~vwd~~--~~-~~~~~~~~~~~~v~~~~ 558 (1134)
|-.+.+|++.++ +......++.+.....+|+ +||+.|+..+ .+|...+|.+. .. .....+......+....
T Consensus 256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS--PDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~ 333 (428)
T PRK01029 256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS--PDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPA 333 (428)
T ss_pred ceeEEEeecccCCCCcceEeecCCCCCcCCeEEC--CCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCcccee
Confidence 334455777653 3333333332333455664 5557666544 56766666543 22 22333444445667889
Q ss_pred ECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCceeEE
Q 001163 559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD---EFMIKFWDMDNVNLLAS 635 (1134)
Q Consensus 559 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~ 635 (1134)
|+|||+.|+..+.. .+...|.+||+.+++....... . ..+....|+|||+.|+.... ...|++||+.+++....
T Consensus 334 wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~-~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 334 WSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P-ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI 410 (428)
T ss_pred ECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 99999999887654 2456799999998876544333 2 24567899999998876542 45789999988776544
Q ss_pred EecCCCCCCcceEEEcCCC
Q 001163 636 IDADGGLQASPCIRFNKEG 654 (1134)
Q Consensus 636 ~~~~~~~~~v~~v~~sp~~ 654 (1134)
... ...+...+|+|-.
T Consensus 411 t~~---~g~~~~p~Ws~~~ 426 (428)
T PRK01029 411 VIG---SGEKRFPSWGAFP 426 (428)
T ss_pred ecC---CCcccCceecCCC
Confidence 432 2345677888743
No 266
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.28 E-value=1.4e-09 Score=125.99 Aligned_cols=210 Identities=15% Similarity=0.082 Sum_probs=138.7
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCC---CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCC--e
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--V 488 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~d---g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~ 488 (1134)
+..+...+...+|||||++||.++.+ ..|++||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 34566789999999999999987654 479999999876432 4446666778999999985 344555444 6
Q ss_pred EEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecC-CC--cEEEEecCCCCceeeecCCCCCeeEEEECcCCCE
Q 001163 489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-DG--KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGAR 565 (1134)
Q Consensus 489 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 565 (1134)
|.+||+.++... .+..+........|++ +|+.|+..+. ++ .|.++|+...+. ..+...........|+|+|++
T Consensus 260 i~~~d~~~~~~~-~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 260 IYVMDLDGKQLT-RLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EEEEECCCCCEE-ECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCE
Confidence 889998877643 3444444444556654 5566665543 34 477777765443 333334556678899999999
Q ss_pred EEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCC---eEEEEEcCCCceeEEEe
Q 001163 566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF---MIKFWDMDNVNLLASID 637 (1134)
Q Consensus 566 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~ 637 (1134)
++....+. +...|.+||+.++....... .. ......|+|+++.|+..+.++ .+++.+.. +.....+.
T Consensus 336 i~~~~~~~-~~~~i~~~d~~~~~~~~l~~-~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 336 IAFVHREG-GGFNIAVMDLDGGGERVLTD-TG--LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEEccC-CceEEEEEeCCCCCeEEccC-CC--CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence 99887543 35579999998865433222 21 234468999999988877543 35555543 44444443
No 267
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=7.8e-10 Score=127.15 Aligned_cols=223 Identities=14% Similarity=0.145 Sum_probs=138.8
Q ss_pred EeecCCCeeEEEEcCCCCeEEEEEeCCC--cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC
Q 001163 352 TLNQGSAVKSMDFHPVQQILLVVGTNMG--DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD 429 (1134)
Q Consensus 352 ~~~h~~~V~~v~fsp~g~~lla~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 429 (1134)
...+...+.+..|||||++++.+...++ .|.+||+.+++.... ....+.....+||||
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~~~wSPD 272 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGAPRFSPD 272 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCCeeECCC
Confidence 3456778899999999998766654444 588899988764321 111223446899999
Q ss_pred CCEEEE-EeCCCE--EEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCC--eEEEEECCCCceeEE-e
Q 001163 430 GTLFGV-AYSKHI--VHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYI-F 503 (1134)
Q Consensus 430 ~~~las-~s~dg~--v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~-~ 503 (1134)
|+.|+. .+.+|. |.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|.++|+.+++.... +
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~ 347 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSRLTF 347 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEEEec
Confidence 998875 455664 778888877632 24456566778999999995 233333343 577778877765432 2
Q ss_pred cCCCcCEEEEeccccCCccEEEEecC-CCc--EEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEE
Q 001163 504 EGHESPVYSICPHHKENIQFIFSTAT-DGK--IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 580 (1134)
Q Consensus 504 ~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 580 (1134)
.++. ....+|+ +||++|+..+. ++. |.++|+.++.... +... .......|+|||+.++..... .+...++
T Consensus 348 ~g~~--~~~~~~S--pDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~-~g~~~l~ 420 (448)
T PRK04792 348 EGEQ--NLGGSIT--PDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTY-QGKQVLA 420 (448)
T ss_pred CCCC--CcCeeEC--CCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEec-CCceEEE
Confidence 3222 2334564 45566655543 444 4445666544332 2221 222345899999999887654 3456688
Q ss_pred EEeCCCCeeEEEecCCCCCceEEEEEcC
Q 001163 581 EWNESEGAVKRTYHGLGKRSVGVVQFDT 608 (1134)
Q Consensus 581 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 608 (1134)
+++. +|.....+..... .+...+|+|
T Consensus 421 ~~~~-~G~~~~~l~~~~g-~~~~p~Wsp 446 (448)
T PRK04792 421 AVSI-DGRFKARLPAGQG-EVKSPAWSP 446 (448)
T ss_pred EEEC-CCCceEECcCCCC-CcCCCccCC
Confidence 8887 4656665654433 456667776
No 268
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.26 E-value=2.9e-10 Score=114.03 Aligned_cols=211 Identities=16% Similarity=0.270 Sum_probs=137.2
Q ss_pred eeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECC-CCceeEEec-CCCcCEEEEeccccCCccEEEEecCCCcEEE
Q 001163 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV-TGTKQYIFE-GHESPVYSICPHHKENIQFIFSTATDGKIKA 535 (1134)
Q Consensus 458 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~v 535 (1134)
.++||.+.|+....-|... -+++.+.|.+++||--+ .++.-..+. ....+++++.+.. +...|+.|-.+|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~--e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS--ESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec--cceEEEEEEecceEEE
Confidence 5789999999888887766 58999999999999633 333222222 1245566666644 4478999999999988
Q ss_pred EecCC----CCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEe-CCCCeeEEEecCCCCCceEEEEEcCCC
Q 001163 536 WLYDN----LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWN-ESEGAVKRTYHGLGKRSVGVVQFDTTK 610 (1134)
Q Consensus 536 wd~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 610 (1134)
+.+.. .........|...+..+.|+-..+++++.+.|+. + .|- .+.+..+..+.... ....+.+.-
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~----~-~~hc~e~~~~lg~Y~~~~--~~t~~~~d~-- 165 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQ----F-AWHCTESGNRLGGYNFET--PASALQFDA-- 165 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccc----e-EEEeeccCCcccceEeec--cCCCCceee--
Confidence 86543 3344445667778999999999999999887642 2 332 22333222211111 001111111
Q ss_pred CEEEEEeCCCeEEEEEcCC--CceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEecc
Q 001163 611 NRFLAAGDEFMIKFWDMDN--VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVES 683 (1134)
Q Consensus 611 ~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 683 (1134)
.+.+.|...|.|.+-.+.. -.++..+. ++...+.+++|.+....|.+|..|..+.+||+.........+.+
T Consensus 166 ~~~fvGd~~gqvt~lr~~~~~~~~i~~~~--~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g 238 (404)
T KOG1409|consen 166 LYAFVGDHSGQITMLKLEQNGCQLITTFN--GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG 238 (404)
T ss_pred EEEEecccccceEEEEEeecCCceEEEEc--CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc
Confidence 1455566667776665543 34555555 45789999999999999999999999999998765444444433
No 269
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=1.3e-09 Score=124.16 Aligned_cols=225 Identities=11% Similarity=0.081 Sum_probs=139.5
Q ss_pred cCCCeeEEEEcCCCCeE--EEEEeCCC--cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCC
Q 001163 355 QGSAVKSMDFHPVQQIL--LVVGTNMG--DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG 430 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~l--la~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~ 430 (1134)
....+.+-+|||||+.+ +++...+| .|.+.++.+|+... +....+.....+|||||
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTFSPRK 242 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEECCCC
Confidence 45567788999999863 33444443 58888888876443 22234455678999999
Q ss_pred CEEEEEeC-----CCEEEEEEccCCc--eeeeeeeeecCCCCEEEEEEecCCCceEEEEE-eCCCeEEEE--ECCC-Cce
Q 001163 431 TLFGVAYS-----KHIVHLYTYHGGD--ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTC-GEDRVIKVW--DAVT-GTK 499 (1134)
Q Consensus 431 ~~las~s~-----dg~v~iwd~~~~~--~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~-s~d~~i~iw--d~~~-~~~ 499 (1134)
+.||..+. +..+.+|++.++. ..+. ...++.+.....+|+|||+. |+.. ..++...+| ++.. +..
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~--Laf~s~~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTR--LVFVSNKDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCE--EEEEECCCCCceEEEEECcccccc
Confidence 99987653 2235557776532 1221 12223344567899999995 4443 356655555 4432 333
Q ss_pred eEEecCCCcCEEEEeccccCCccEEEEecCC---CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCC
Q 001163 500 QYIFEGHESPVYSICPHHKENIQFIFSTATD---GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGE 576 (1134)
Q Consensus 500 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 576 (1134)
...+..+...+....|+| ||+.|+..+.+ ..|.+||+.+++.... ......+....|+|||+.|+..... .+.
T Consensus 319 ~~~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSpDG~~L~f~~~~-~g~ 394 (428)
T PRK01029 319 PRLLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSWAIDSLHLVYSAGN-SNE 394 (428)
T ss_pred eEEeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEECCCCCEEEEEECC-CCC
Confidence 444544545566677755 45767655432 3689999987655433 2223456788999999998876543 345
Q ss_pred eEEEEEeCCCCeeEEEecCCCCCceEEEEEcCC
Q 001163 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT 609 (1134)
Q Consensus 577 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~ 609 (1134)
..|+++|+..++........ ..+...+|+|-
T Consensus 395 ~~L~~vdl~~g~~~~Lt~~~--g~~~~p~Ws~~ 425 (428)
T PRK01029 395 SELYLISLITKKTRKIVIGS--GEKRFPSWGAF 425 (428)
T ss_pred ceEEEEECCCCCEEEeecCC--CcccCceecCC
Confidence 67999999888765544322 24556677764
No 270
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.24 E-value=9.4e-10 Score=119.07 Aligned_cols=188 Identities=17% Similarity=0.282 Sum_probs=150.0
Q ss_pred CCCCeEEEee-CCeEEEEEccCCeEEEEecCC---CCCeEEEEEc------C-------------CCCcEEEEEeCCCcE
Q 001163 853 KNDSYVMSAS-GGKISLFNMMTFKTMTTFMPP---PPAATFLAFH------P-------------QDNNIIAIGMEDSSI 909 (1134)
Q Consensus 853 ~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~---~~~v~~l~~s------p-------------~~~~~la~g~~dg~i 909 (1134)
|-+.++|... ||.+++||..+++....+... .+..++..|. | .|...+|-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456778776 899999999999888887632 2344444442 2 144578899999999
Q ss_pred EEEEcccceEEEecc--CccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcC
Q 001163 910 QIYNVRVDEVKTKLK--GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHL 987 (1134)
Q Consensus 910 ~iwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~ 987 (1134)
.+|++..|+....+. .|.+.|.++.++.+-..+.|++.|+.+..|+..... .+....... ..+.+++.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~---~~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQK---PLVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCC---CccceEEEcC
Confidence 999999999888776 599999999999999999999999999999998854 333333333 3588999999
Q ss_pred CCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccC-----CCEEEE-EecCCcEEEeecCC
Q 001163 988 DQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCD-----SQSIYV-AFEEGSVGVLTAST 1051 (1134)
Q Consensus 988 dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~d-----g~~l~s-~s~Dg~i~vwd~~~ 1051 (1134)
||+.|+++ .++|.+||+++++.+..|. +|.++|+++.|..+ |.++++ ...+..+.+|-+..
T Consensus 155 D~~~l~~a-s~~ik~~~~~~kevv~~ft--gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTA-SRQIKVLDIETKEVVITFT--GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEec-cceEEEEEccCceEEEEec--CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99988874 5789999999999999998 99999999999988 777654 44456688887765
No 271
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=1.8e-09 Score=125.18 Aligned_cols=227 Identities=11% Similarity=0.086 Sum_probs=142.6
Q ss_pred eEEEeecCCCeeEEEEcCCCCeEEEEEeCC--CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEE
Q 001163 349 VVMTLNQGSAVKSMDFHPVQQILLVVGTNM--GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (1134)
Q Consensus 349 ~~~~~~h~~~V~~v~fsp~g~~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 426 (1134)
......+...+...+|||||++|+++...+ ..|.+||+.+++... +....+.+...+|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~~~ 250 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAPAW 250 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCeEE
Confidence 344456778899999999999876665443 369999998886432 1223344567899
Q ss_pred cCCCCEEEE-EeCCC--EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCC--eEEEEECCCCceeE
Q 001163 427 SPDGTLFGV-AYSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQY 501 (1134)
Q Consensus 427 spd~~~las-~s~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~ 501 (1134)
||||+.|+. .+.+| .|.+||+.+++.. .+..+........|+|||+. ++++...++ .|.++|+.+++...
T Consensus 251 SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~~~~ 325 (430)
T PRK00178 251 SPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGRAER 325 (430)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE
Confidence 999998875 44444 6888899887633 24456666777899999995 233333333 67888888877543
Q ss_pred EecCCCcCEEEEeccccCCccEEEEecC-CC--cEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeE
Q 001163 502 IFEGHESPVYSICPHHKENIQFIFSTAT-DG--KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY 578 (1134)
Q Consensus 502 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 578 (1134)
... .........|+ ++|+.|+..+. ++ .|.+||+.++..... .. ........|+|||+.++..+.. .+...
T Consensus 326 lt~-~~~~~~~~~~S--pdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l-t~-~~~~~~p~~spdg~~i~~~~~~-~g~~~ 399 (430)
T PRK00178 326 VTF-VGNYNARPRLS--ADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL-TD-TSLDESPSVAPNGTMLIYATRQ-QGRGV 399 (430)
T ss_pred eec-CCCCccceEEC--CCCCEEEEEEccCCceEEEEEECCCCCEEEc-cC-CCCCCCceECCCCCEEEEEEec-CCceE
Confidence 221 11222334554 45566765553 33 477888876554332 22 2223356899999999887654 34566
Q ss_pred EEEEeCCCCeeEEEecCCCCCceEEEEEcC
Q 001163 579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDT 608 (1134)
Q Consensus 579 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 608 (1134)
+.+++... .....+..... .+...+|+|
T Consensus 400 l~~~~~~g-~~~~~l~~~~g-~~~~p~ws~ 427 (430)
T PRK00178 400 LMLVSING-RVRLPLPTAQG-EVREPSWSP 427 (430)
T ss_pred EEEEECCC-CceEECcCCCC-CcCCCccCC
Confidence 88888754 33344443322 455566665
No 272
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.24 E-value=1.4e-09 Score=117.86 Aligned_cols=194 Identities=15% Similarity=0.166 Sum_probs=155.6
Q ss_pred cCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEe------c------------CCCceEEEEEeCCCe
Q 001163 427 SPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS------Y------------PNKQLSVVTCGEDRV 488 (1134)
Q Consensus 427 spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s------~------------~~~~~~l~s~s~d~~ 488 (1134)
.|-..|+|....||.++|||...++....+.....-++.-++..|. | .+....++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3457799999999999999999988655443333334455555552 1 122237888999999
Q ss_pred EEEEECCCCceeEEec--CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEE
Q 001163 489 IKVWDAVTGTKQYIFE--GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARL 566 (1134)
Q Consensus 489 i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 566 (1134)
|.++++..|+....+. .|.+.|.++.++..- ..|.+++.|+.+..|+................+.+++++|||+.+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~--~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL--GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccccc--CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9999999999988875 599999999875443 689999999999999999888888888888899999999999999
Q ss_pred EEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCC-----CCEEEEEe-CCCeEEEEEcCC
Q 001163 567 FSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT-----KNRFLAAG-DEFMIKFWDMDN 629 (1134)
Q Consensus 567 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~-~dg~i~iwd~~~ 629 (1134)
++++. .|.+||+++++.+.+|.+|.. +|+++.|.-. |.+++++. .+..+.+|-.+.
T Consensus 160 ~~as~------~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTASR------QIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eeccc------eEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 98864 499999999999999999987 9999998776 67777654 566778886654
No 273
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.24 E-value=2.3e-08 Score=107.49 Aligned_cols=267 Identities=14% Similarity=0.151 Sum_probs=166.0
Q ss_pred CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeC----------CCEEEEEEcc
Q 001163 379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS----------KHIVHLYTYH 448 (1134)
Q Consensus 379 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~----------dg~v~iwd~~ 448 (1134)
++|.+.|..+++.+.... .|.... .+ +||||+.|.++.. +..|.+||..
T Consensus 27 ~~v~ViD~~~~~v~g~i~------------------~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTD------------------GGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred ceEEEEECCCCEEEEEEE------------------ccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 889999999988765411 122112 24 9999998887755 7789999999
Q ss_pred CCceeeeeeeeec--C---CCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccE
Q 001163 449 GGDELRNHLEIEA--H---VGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQF 523 (1134)
Q Consensus 449 ~~~~~~~~~~l~~--h---~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 523 (1134)
+.+.+.... +.. + ...-..++++|||+.+++.--+.+..|.+.|+.+++.+.++.--.. ..-.. ..+...
T Consensus 86 t~~~~~~i~-~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~---t~e~~~ 160 (352)
T TIGR02658 86 THLPIADIE-LPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFP---TANDTF 160 (352)
T ss_pred cCcEEeEEc-cCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEE---ecCCcc
Confidence 998776432 111 1 2234478999999953222224489999999999999988764221 11111 111122
Q ss_pred EEEecCCCcEEEEecCCCCceee-----ecCCCCCe-eEEEECc-CCCEEEEEecCCCCCeEEEEEeCCCC-----eeEE
Q 001163 524 IFSTATDGKIKAWLYDNLGSRVD-----YDAPGHSS-TMMAYSA-DGARLFSCGTNKEGESYLVEWNESEG-----AVKR 591 (1134)
Q Consensus 524 l~s~s~dg~i~vwd~~~~~~~~~-----~~~~~~~v-~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~-----~~~~ 591 (1134)
. .-+.||......++..+.... +......+ ..-.|++ +|+++..... +.|.+.|+... +...
T Consensus 161 ~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-----G~V~~id~~~~~~~~~~~~~ 234 (352)
T TIGR02658 161 F-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-----GKIFQIDLSSGDAKFLPAIE 234 (352)
T ss_pred E-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-----CeEEEEecCCCcceecceee
Confidence 2 333455555544443322111 00100000 0013455 7887776542 46999995432 2232
Q ss_pred EecCC------CCCceEEEEEcCCCCEEEEEe----------CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCc
Q 001163 592 TYHGL------GKRSVGVVQFDTTKNRFLAAG----------DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI 655 (1134)
Q Consensus 592 ~~~~~------~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 655 (1134)
.+... ......-+++++++++++... ..+.|.++|..+++.+..+... ..+..++++||++
T Consensus 235 ~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG---~~~~~iavS~Dgk 311 (352)
T TIGR02658 235 AFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG---HEIDSINVSQDAK 311 (352)
T ss_pred eccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC---CceeeEEECCCCC
Confidence 22211 112334599999999988843 2257999999999999998752 3678999999999
Q ss_pred -EEEEEE-CCCcEEEEEccCCceeEEEe
Q 001163 656 -LLAVST-NDNGIKILANADGIRLLRTV 681 (1134)
Q Consensus 656 -~l~~~~-~dg~i~iw~~~~~~~~~~~~ 681 (1134)
+|++.. .++.|.++|..++ +.++.+
T Consensus 312 p~lyvtn~~s~~VsViD~~t~-k~i~~i 338 (352)
T TIGR02658 312 PLLYALSTGDKTLYIFDAETG-KELSSV 338 (352)
T ss_pred eEEEEeCCCCCcEEEEECcCC-eEEeee
Confidence 777666 5788999999988 555554
No 274
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.23 E-value=2.3e-09 Score=124.29 Aligned_cols=213 Identities=15% Similarity=0.142 Sum_probs=138.9
Q ss_pred EEEeecCCCeeEEEEcCCCCeEEEEEeCC--CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163 350 VMTLNQGSAVKSMDFHPVQQILLVVGTNM--GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1134)
Q Consensus 350 ~~~~~h~~~V~~v~fsp~g~~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (1134)
...+.+...+.+.+|||||++++.+...+ ..|++||+.+++... +..+.+.+.+++|+
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~~~~s 242 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGAPAFS 242 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEEC
Confidence 33445677899999999999876554333 479999998875432 23345567789999
Q ss_pred CCCCEEEEE-eCCC--EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC-CC--eEEEEECCCCceeE
Q 001163 428 PDGTLFGVA-YSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-DR--VIKVWDAVTGTKQY 501 (1134)
Q Consensus 428 pd~~~las~-s~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-d~--~i~iwd~~~~~~~~ 501 (1134)
|||+.|+.. +.++ .|.+||+.++... .+..+........|+|||+. |+..+. ++ .|.++|+.+++..
T Consensus 243 pDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~~~~- 315 (417)
T TIGR02800 243 PDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGGEVR- 315 (417)
T ss_pred CCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCCCEE-
Confidence 999987754 4444 5888999887532 24445555667899999994 544443 33 6888888777643
Q ss_pred EecCCCcCEEEEeccccCCccEEEEecCCC---cEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeE
Q 001163 502 IFEGHESPVYSICPHHKENIQFIFSTATDG---KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY 578 (1134)
Q Consensus 502 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 578 (1134)
.+..+...+....|++ +|.+++.++.++ .|.+||+.+..... +.. ........|+|||+.|+....++ +...
T Consensus 316 ~l~~~~~~~~~~~~sp--dg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~-~~~~~~p~~spdg~~l~~~~~~~-~~~~ 390 (417)
T TIGR02800 316 RLTFRGGYNASPSWSP--DGDLIAFVHREGGGFNIAVMDLDGGGERV-LTD-TGLDESPSFAPNGRMILYATTRG-GRGV 390 (417)
T ss_pred EeecCCCCccCeEECC--CCCEEEEEEccCCceEEEEEeCCCCCeEE-ccC-CCCCCCceECCCCCEEEEEEeCC-CcEE
Confidence 3433445556666654 557787777665 78888887643322 222 22345568999999998887643 3455
Q ss_pred EEEEeCCCCeeEEEecC
Q 001163 579 LVEWNESEGAVKRTYHG 595 (1134)
Q Consensus 579 i~~wd~~~~~~~~~~~~ 595 (1134)
+.+.+.. +.....+..
T Consensus 391 l~~~~~~-g~~~~~~~~ 406 (417)
T TIGR02800 391 LGLVSTD-GRFRARLPL 406 (417)
T ss_pred EEEEECC-CceeeECCC
Confidence 6666644 444444443
No 275
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.20 E-value=2.1e-09 Score=105.87 Aligned_cols=254 Identities=16% Similarity=0.079 Sum_probs=166.7
Q ss_pred cCCCeeEEEEcC---CCCeEEEEEeCCCcEEEEecCCccceee-eceeeeeccccCccccccccccCCCCEEEEEEcCCC
Q 001163 355 QGSAVKSMDFHP---VQQILLVVGTNMGDVMLWEVGSRERIAV-KSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG 430 (1134)
Q Consensus 355 h~~~V~~v~fsp---~g~~lla~gs~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~ 430 (1134)
..+.+..+.|.- +|...++-...+|.|.++.....+.... +.+. . ..-......++.|++.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls------------~--~ki~~~~~lslD~~~~~ 133 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLS------------S--KKISVVEALSLDISTSG 133 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccc------------h--hhhhheeeeEEEeeccC
Confidence 445666677763 4554566777788888888764432221 0000 0 00011135678999999
Q ss_pred CEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECC-CCceeEE-ecCCCc
Q 001163 431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV-TGTKQYI-FEGHES 508 (1134)
Q Consensus 431 ~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~-~~~h~~ 508 (1134)
..++++-.+|.+.+-+..... +.....+++|+...+-+.|+....+ ++.+||.|+.+..||++ .++.+.. .+-|..
T Consensus 134 ~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~ 211 (339)
T KOG0280|consen 134 TKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS 211 (339)
T ss_pred ceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeec
Confidence 999999999999866554433 4444468899999999999987766 79999999999999998 4555554 556899
Q ss_pred CEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCC--CEEEEEecCCCCCeEEEEEeCCC
Q 001163 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG--ARLFSCGTNKEGESYLVEWNESE 586 (1134)
Q Consensus 509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~i~~wd~~~ 586 (1134)
.|.+|.-++ +.+.+|++|+.|-.|++||.++......-..-.+.|..+..+|.- +.|+++-.++ ..+-+...
T Consensus 212 GV~SI~ss~-~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-----~ki~~~~~ 285 (339)
T KOG0280|consen 212 GVVSIYSSP-PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-----AKILDSSD 285 (339)
T ss_pred ceEEEecCC-CCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-----ceEEEecc
Confidence 999998654 455899999999999999999776665555556789999998854 3444444333 44555443
Q ss_pred C--e---eEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEE-EEEcCCCc
Q 001163 587 G--A---VKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIK-FWDMDNVN 631 (1134)
Q Consensus 587 ~--~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~-iwd~~~~~ 631 (1134)
+ + .......|.. -+..-.|......+++++ .|+.++ +|-..++.
T Consensus 286 ~~~e~~~~~~s~~~hdS-l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 286 KVLEFQIVLPSDKIHDS-LCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred cccchheeeeccccccc-eeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 3 2 2222333332 223333433335678876 666654 77554443
No 276
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.12 E-value=4.1e-08 Score=111.79 Aligned_cols=306 Identities=11% Similarity=0.047 Sum_probs=180.2
Q ss_pred cEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCce
Q 001163 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSV 601 (1134)
Q Consensus 522 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 601 (1134)
..++.++.++.|..+|..+++................. ++..++.++. ++.++.+|..+|+.+........ ..
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~-~~ 138 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTE----KGEVIALDAEDGKELWRAKLSSE-VL 138 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcC----CCEEEEEECCCCcEeeeeccCce-ee
Confidence 57888888899999998888777665554432222222 4566666654 34699999999998877654322 11
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCC---cceEEEcCCCcEEEEEECCCcEEEEEccCCceeE
Q 001163 602 GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQA---SPCIRFNKEGILLAVSTNDNGIKILANADGIRLL 678 (1134)
Q Consensus 602 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~ 678 (1134)
..... .+..++.++.+|.|+.||..+|+.+........... ...... .+..++.+..+|.+..+|..++....
T Consensus 139 ~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 139 SPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred cCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEee
Confidence 11122 245777888899999999999998877654321100 011111 12467778888999999988874322
Q ss_pred EEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecc
Q 001163 679 RTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTE 758 (1134)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~ 758 (1134)
. ....... +. . ...++.+.
T Consensus 215 ~-~~~~~~~---------------------------------------------------g~------~-~~~~~~~~-- 233 (377)
T TIGR03300 215 E-QRVALPK---------------------------------------------------GR------T-ELERLVDV-- 233 (377)
T ss_pred e-eccccCC---------------------------------------------------CC------C-chhhhhcc--
Confidence 1 1100000 00 0 00000000
Q ss_pred cCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCC
Q 001163 759 ITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS 838 (1134)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 838 (1134)
.. ...+ .+..+++++.+|.+..|+....+ .+|....+
T Consensus 234 ----------------~~----~p~~--~~~~vy~~~~~g~l~a~d~~tG~-------------~~W~~~~~-------- 270 (377)
T TIGR03300 234 ----------------DG----DPVV--DGGQVYAVSYQGRVAALDLRSGR-------------VLWKRDAS-------- 270 (377)
T ss_pred ----------------CC----ccEE--ECCEEEEEEcCCEEEEEECCCCc-------------EEEeeccC--------
Confidence 00 0011 13456667777888887654321 23332210
Q ss_pred CCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc
Q 001163 839 DTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPP-PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV 916 (1134)
Q Consensus 839 ~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~ 916 (1134)
.....+ .++..+++++ +|.+..+|..+++.+....... ......... +..|++++.+|.|+++|..+
T Consensus 271 ------~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~---g~~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 271 ------SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVV---GGYLVVGDFEGYLHWLSRED 339 (377)
T ss_pred ------CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEE---CCEEEEEeCCCEEEEEECCC
Confidence 011112 2344555555 8999999999998887663222 222333332 34788899999999999999
Q ss_pred ceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEE
Q 001163 917 DEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 954 (1134)
Q Consensus 917 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iw 954 (1134)
|+.+.+++.+...+..--...++ .|+.++.||.|..|
T Consensus 340 G~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 340 GSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence 99998888766544433222344 58888999988765
No 277
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.05 E-value=2.4e-07 Score=105.51 Aligned_cols=183 Identities=11% Similarity=0.038 Sum_probs=116.0
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEE
Q 001163 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA 558 (1134)
Q Consensus 479 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 558 (1134)
.++.++.++.|..+|..+|+.+..+.-......... -++..++.++.++.+..+|..+++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~----v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG----ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE----EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 578888899999999999999887654332112222 2336788888999999999988887766554332111111
Q ss_pred ECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCce-----EEEEEcCCCCEEEEEeCCCeEEEEEcCCCcee
Q 001163 559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSV-----GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL 633 (1134)
Q Consensus 559 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 633 (1134)
. .+..++.+.. ++.++.||.++|+.+..+..... .. ...... +..++.+..+|.+..+|..+|+.+
T Consensus 143 v--~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 143 V--ANGLVVVRTN----DGRLTALDAATGERLWTYSRVTP-ALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred E--ECCEEEEECC----CCeEEEEEcCCCceeeEEccCCC-ceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEe
Confidence 2 2345555433 44699999999998877655432 11 111121 246778888899999999999877
Q ss_pred EEEecCCCC--CC---cceEEEcC--CCcEEEEEECCCcEEEEEccCC
Q 001163 634 ASIDADGGL--QA---SPCIRFNK--EGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 634 ~~~~~~~~~--~~---v~~v~~sp--~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
......... .. ...+.-+| .+..+++++.+|.++.||..++
T Consensus 214 W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 214 WEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred eeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 654321100 00 00111111 3557778888999999998877
No 278
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.04 E-value=2.9e-09 Score=116.94 Aligned_cols=278 Identities=17% Similarity=0.260 Sum_probs=187.4
Q ss_pred eeEeCCCCCCcccccCCCC-------CceeEEEeec--CCCeeEEEEcCCC--CeEEEEEeCCCcEEEEecCCccceeee
Q 001163 327 PVAYTPQSLGQSSYSTDDL-------PKTVVMTLNQ--GSAVKSMDFHPVQ--QILLVVGTNMGDVMLWEVGSRERIAVK 395 (1134)
Q Consensus 327 ~~~~s~~~~~l~~~~~d~~-------~~~~~~~~~h--~~~V~~v~fsp~g--~~lla~gs~dg~v~iwd~~~~~~~~~~ 395 (1134)
++..+|.|+.++..+..++ +...-+-+.| .-.|-.+.|||.- .+. ++......-.||++.......
T Consensus 29 a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~w-iVsts~qkaiiwnlA~ss~~a-- 105 (1081)
T KOG0309|consen 29 AVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYW-IVSTSNQKAIIWNLAKSSSNA-- 105 (1081)
T ss_pred ceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCcee-EEecCcchhhhhhhhcCCccc--
Confidence 4568999998887765543 4444455554 3567888998853 333 344555667788876443221
Q ss_pred ceeeeeccccCccccccccccCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecC
Q 001163 396 SFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP 474 (1134)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~ 474 (1134)
..-++.||+..|+.+.|.| ....+|+++.|-.|..||+++.... +.....-...-..|+|+..
T Consensus 106 --------------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p--~ys~~~w~s~asqVkwnyk 169 (1081)
T KOG0309|consen 106 --------------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP--FYSTSSWRSAASQVKWNYK 169 (1081)
T ss_pred --------------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc--eeeeecccccCceeeeccc
Confidence 1124789999999999999 4568999999999999999986532 2234444455678999987
Q ss_pred CCceEEEEEeCCCeEEEEECCCC-ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecC-CCC
Q 001163 475 NKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-PGH 552 (1134)
Q Consensus 475 ~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~ 552 (1134)
.. .+...+..+.|++||.+.| .++..+++|...|+.+.|..--. ..+.+.+.|++|++||.+.......... ...
T Consensus 170 ~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~ 246 (1081)
T KOG0309|consen 170 DP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNF 246 (1081)
T ss_pred Cc--chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccC
Confidence 66 4666677789999999876 56778999999999998754332 4688999999999999886554443322 234
Q ss_pred CeeEEEECcCCCEEEEEecCCCCCeEEEE---------EeCCC-CeeEEEecCCCCCceEEEEEcC--------C--CCE
Q 001163 553 SSTMMAYSADGARLFSCGTNKEGESYLVE---------WNESE-GAVKRTYHGLGKRSVGVVQFDT--------T--KNR 612 (1134)
Q Consensus 553 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~---------wd~~~-~~~~~~~~~~~~~~v~~~~~~~--------~--~~~ 612 (1134)
+|..-.+.|-|+-..+--..+ ...+.+ |+..+ .+++.+|.||.+ .|...-|-. + .-.
T Consensus 247 piw~~r~~Pfg~g~~~mp~~G--~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~rdfQ 323 (1081)
T KOG0309|consen 247 PIWRGRYLPFGEGYCIMPMVG--GNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSRDFQ 323 (1081)
T ss_pred cceeccccccCceeEeccccC--CeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCcccee
Confidence 666666666554333222111 112333 44433 367899999987 443332221 1 236
Q ss_pred EEEEeCCCeEEEEEcCC
Q 001163 613 FLAAGDEFMIKFWDMDN 629 (1134)
Q Consensus 613 l~~~~~dg~i~iwd~~~ 629 (1134)
|++-+.|..+++|-+.+
T Consensus 324 LVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 324 LVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred EEEeecCCceEeeeccH
Confidence 99999999999998754
No 279
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.98 E-value=7e-08 Score=95.34 Aligned_cols=271 Identities=13% Similarity=0.100 Sum_probs=170.6
Q ss_pred CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC---CCC-EEEEEeCCCEEEEEEccCCceee
Q 001163 379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP---DGT-LFGVAYSKHIVHLYTYHGGDELR 454 (1134)
Q Consensus 379 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---d~~-~las~s~dg~v~iwd~~~~~~~~ 454 (1134)
|.+.+|++...+......+ ....+..+..+.|.- +|. .++-+-.+|.|.++.........
T Consensus 46 Gkl~Lys~~d~~~~~l~~~----------------q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~ 109 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTL----------------QCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV 109 (339)
T ss_pred cceEEEeecccccCcccee----------------eeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeee
Confidence 5677888776654431111 123456777888874 555 66777888999999876544332
Q ss_pred eeeeeecCCCC---EEEEEEecCCCceEEEEEeCCCeEEEEECCCCcee--EEecCCCcCEEEEeccccCCccEEEEecC
Q 001163 455 NHLEIEAHVGS---VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ--YIFEGHESPVYSICPHHKENIQFIFSTAT 529 (1134)
Q Consensus 455 ~~~~l~~h~~~---V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 529 (1134)
.+..+..-.-. -.++.|++-+. -++++..+|.+.+-+....... ++++.|..+.+...|+.... +++++|+.
T Consensus 110 ~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p-nlvytGgD 186 (339)
T KOG0280|consen 110 HLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP-NLVYTGGD 186 (339)
T ss_pred eecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCC-ceEEecCC
Confidence 22222222222 34778998888 5888888999987765555444 48899999999998876544 79999999
Q ss_pred CCcEEEEecCCCC-ceee-ecCCCCCeeEEEECc-CCCEEEEEecCCCCCeEEEEEeCC-CCeeEEEecCCCCCceEEEE
Q 001163 530 DGKIKAWLYDNLG-SRVD-YDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYLVEWNES-EGAVKRTYHGLGKRSVGVVQ 605 (1134)
Q Consensus 530 dg~i~vwd~~~~~-~~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~ 605 (1134)
|+.+..||++..+ .... ...|...|.++.-+| ++.++++|+.|. .|++||.+ -++++..-. -.+.|..+.
T Consensus 187 D~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe----~i~~~DtRnm~kPl~~~~--v~GGVWRi~ 260 (339)
T KOG0280|consen 187 DGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDE----CIRVLDTRNMGKPLFKAK--VGGGVWRIK 260 (339)
T ss_pred CceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecccc----ceeeeehhcccCccccCc--cccceEEEE
Confidence 9999999999443 2222 234566888887775 577899998754 59999998 456654333 335899999
Q ss_pred EcCCCC-EEEEEeCCCeEEEEEcCCCcee--EEEe-cCCCCCCcceEEEcCCCcEEEEEE-CCCcEE-EEEccCC
Q 001163 606 FDTTKN-RFLAAGDEFMIKFWDMDNVNLL--ASID-ADGGLQASPCIRFNKEGILLAVST-NDNGIK-ILANADG 674 (1134)
Q Consensus 606 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~--~~~~-~~~~~~~v~~v~~sp~~~~l~~~~-~dg~i~-iw~~~~~ 674 (1134)
.+|.-. .++.++.-.-.+|-+...+... ..+. ...+.+-+..-.|......+++++ .|+.++ +|-..++
T Consensus 261 ~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 261 HHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 988643 3334444444666666544322 1111 112333344444543345677754 466655 7755444
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.98 E-value=2.2e-07 Score=116.89 Aligned_cols=261 Identities=9% Similarity=0.034 Sum_probs=162.5
Q ss_pred EEEEEecC-CceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeE
Q 001163 780 SRLIYTNS-GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYV 858 (1134)
Q Consensus 780 ~~l~~spd-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l 858 (1134)
..++++++ +..+++-..++.|++|+........-+. .+. .....|.... +.-.....+++++++..|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~---~g~---~G~~dG~~~~------a~f~~P~GIavd~~gn~L 638 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS---TGE---EGLRDGSFED------ATFNRPQGLAYNAKKNLL 638 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc---CCC---cCCCCCchhc------cccCCCcEEEEeCCCCEE
Confidence 46788875 5666666678889988765321000000 000 0000111000 122345789999998877
Q ss_pred EEee--CCeEEEEEccCCeEEEEecCC-----------------CCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceE
Q 001163 859 MSAS--GGKISLFNMMTFKTMTTFMPP-----------------PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV 919 (1134)
Q Consensus 859 a~~s--dg~i~lwd~~~~~~~~~~~~~-----------------~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~ 919 (1134)
+++. ++.|+++|..++. +.++.+. -..-..++|+|+++.++++.+.++.|++||..++..
T Consensus 639 YVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v 717 (1057)
T PLN02919 639 YVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT 717 (1057)
T ss_pred EEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence 7765 4679999987754 3333210 112467999996667777778889999999987754
Q ss_pred EEecc---------Cc------cCceEEEEEeeCCCE-EEEEeCCCcEEEEECCCCccccce---------eeeec--CC
Q 001163 920 KTKLK---------GH------QKRITGLAFSNTLNV-LVSSGADSQLCVWSTDGWEKQASK---------FLTIP--NG 972 (1134)
Q Consensus 920 ~~~l~---------~h------~~~V~~l~~s~d~~~-l~s~s~Dg~i~iwd~~~~~~~~~~---------~~~~~--~~ 972 (1134)
. .+. ++ -.....|+|+|+++. +++-+.++.|++||+.++...... ..... .+
T Consensus 718 ~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 718 R-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred E-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 2 111 11 123457999999984 455566789999999875421000 00000 00
Q ss_pred C--CCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcccceeeccC-----------CCccCEEEEEEccCCCEEEEE
Q 001163 973 R--TASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPR-----------EASGPITHATYSCDSQSIYVA 1038 (1134)
Q Consensus 973 ~--~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~-----------~h~~~v~~~~~s~dg~~l~s~ 1038 (1134)
. .........++++++|..+++ ..+++|++||..++......... ++-.....+++++||+++++-
T Consensus 797 ~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD 876 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD 876 (1057)
T ss_pred chhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence 0 000123468999999987666 57899999999877654322110 112367889999999998888
Q ss_pred ecCCcEEEeecCCCcc
Q 001163 1039 FEEGSVGVLTASTLRL 1054 (1134)
Q Consensus 1039 s~Dg~i~vwd~~~~~~ 1054 (1134)
+.++.|++||+.+++.
T Consensus 877 t~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 877 TNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCEEEEEECCCCcc
Confidence 8999999999999875
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.97 E-value=2.8e-07 Score=116.00 Aligned_cols=254 Identities=11% Similarity=0.060 Sum_probs=159.4
Q ss_pred eEEEEcCCCC-eEEEee-CCeEEEEEccCCeEEEEecC--C------------CCCeEEEEEcCCCCcEEEEE-eCCCcE
Q 001163 847 PCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMTTFMP--P------------PPAATFLAFHPQDNNIIAIG-MEDSSI 909 (1134)
Q Consensus 847 ~~v~~s~dg~-~la~~s-dg~i~lwd~~~~~~~~~~~~--~------------~~~v~~l~~sp~~~~~la~g-~~dg~i 909 (1134)
..+++++++. ++++-. ++.|++||.. +..+..+.+ . ......+++.+ ++..|+++ ...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 4678887644 444444 6889999985 444444332 1 12357899998 56555444 456789
Q ss_pred EEEEcccceEEEeccC--c---------------cCceEEEEEee-CCCEEEEEeCCCcEEEEECCCCcccccee---ee
Q 001163 910 QIYNVRVDEVKTKLKG--H---------------QKRITGLAFSN-TLNVLVSSGADSQLCVWSTDGWEKQASKF---LT 968 (1134)
Q Consensus 910 ~iwd~~~~~~~~~l~~--h---------------~~~V~~l~~s~-d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~---~~ 968 (1134)
+++|..++.. .++.+ . -..-..++|+| ++..+++.+.++.|++||..++....... ..
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999877653 33311 0 11235799999 56677777888999999987754211000 00
Q ss_pred ecCCCC---CCCCCceEEEEcCCCCEEEE--EeeceEEEEeCCCcccceee-----------ccCC--------CccCEE
Q 001163 969 IPNGRT---ASALADTRVQFHLDQTHLLA--VHETQIAIYEAPKLECLKQF-----------VPRE--------ASGPIT 1024 (1134)
Q Consensus 969 ~~~~~~---~~~~~v~~l~fs~dg~~l~~--~~d~~i~iwd~~~~~~~~~~-----------~~~~--------h~~~v~ 1024 (1134)
...+.. ........++|+|||++|++ +.+++|++||+.++...... .... .-....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 000100 01134567999999987666 36689999999876532110 0000 012346
Q ss_pred EEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcc-cC-----CCCCCCceeEEEEecCCCCCEEEEEecCCcEEE
Q 001163 1025 HATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAY-LP-----TNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYI 1098 (1134)
Q Consensus 1025 ~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~-~~-----~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~v 1098 (1134)
.+++++||.++++-+.++.|++||..++........... .. .+.-. .+..+++++ +++++++-+.+++|++
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~--~P~GIavd~-dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLS--EPAGLALGE-NGRLFVADTNNSLIRY 884 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccC--CceEEEEeC-CCCEEEEECCCCEEEE
Confidence 899999999888888999999999998876543331110 00 01111 234557778 6889999999999999
Q ss_pred EeCCCCCC
Q 001163 1099 IEPLEAEG 1106 (1134)
Q Consensus 1099 W~~~~~~~ 1106 (1134)
||+...+.
T Consensus 885 id~~~~~~ 892 (1057)
T PLN02919 885 LDLNKGEA 892 (1057)
T ss_pred EECCCCcc
Confidence 99987653
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=2.9e-09 Score=112.81 Aligned_cols=220 Identities=15% Similarity=0.238 Sum_probs=164.9
Q ss_pred EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc-------ceEEEeccCccCceEEEEEeeCCCEEEEEeCCC
Q 001163 877 MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-------DEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS 949 (1134)
Q Consensus 877 ~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg 949 (1134)
+..+.+|...|..++--. +.+-+++++.|++|++|.++. ..+..+++.|..+|.++.|-.+-++++++ ||
T Consensus 728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 345778988888887665 677889999999999999863 24667889999999999999999999877 88
Q ss_pred cEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcC--CCCEEEE--EeeceEEEEeCCCcccceeecc---CCCccC
Q 001163 950 QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHL--DQTHLLA--VHETQIAIYEAPKLECLKQFVP---REASGP 1022 (1134)
Q Consensus 950 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~--dg~~l~~--~~d~~i~iwd~~~~~~~~~~~~---~~h~~~ 1022 (1134)
.|.+||.-.++... ++...... +.+..+..-+ |...+.+ +...+|+++|...++....+.. .+...-
T Consensus 805 giHlWDPFigr~La----q~~dapk~--~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~ 878 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLA----QMEDAPKE--GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL 878 (1034)
T ss_pred cceeecccccchhH----hhhcCccc--CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence 89999987655322 12222111 2233333322 4444444 3678999999999988777753 334577
Q ss_pred EEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEE-EeC
Q 001163 1023 ITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYI-IEP 1101 (1134)
Q Consensus 1023 v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~v-W~~ 1101 (1134)
+.+++.-+.|++++++-..|+|.+.|..+|+.+..+.+.. .....+ + .| ..+.|+....|.++.+ |-.
T Consensus 879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme-------cdllql--a-ap-sdq~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 879 TRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME-------CDLLQL--A-AP-SDQALAQSALDHSLAVNWHA 947 (1034)
T ss_pred eeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc-------chhhhh--c-Cc-hhHHHHhhcccceeEeeehh
Confidence 8999999999999999999999999999999887776443 112222 1 25 3578888899999999 999
Q ss_pred CCCCCCccCCCCCCC
Q 001163 1102 LEAEGRWGTSPPNEN 1116 (1134)
Q Consensus 1102 ~~~~~~~~~~~~~~~ 1116 (1134)
.++-++..--||-|.
T Consensus 948 ldgimh~q~kpppep 962 (1034)
T KOG4190|consen 948 LDGIMHLQDKPPPEP 962 (1034)
T ss_pred cCCeeeeccCCCCcc
Confidence 999988888888774
No 283
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.92 E-value=7e-09 Score=124.88 Aligned_cols=201 Identities=14% Similarity=0.235 Sum_probs=160.9
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 493 (1134)
...|-..|.++.=+|...+-++|+.||.|++|....++.+....+. |. ..|+.+.|+.+|+ .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 3446678899999999999999999999999999998877655433 33 8899999999999 688889999999999
Q ss_pred CCCCceeEEecCCCcCEEEEeccccCCccEEEEec---CCCcEEEEecCCCCc-eeeecCCCCCeeEEEECcCCCEEEEE
Q 001163 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA---TDGKIKAWLYDNLGS-RVDYDAPGHSSTMMAYSADGARLFSC 569 (1134)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~ 569 (1134)
+. .+.....+.|......+.|.. ..+++++ .++.+.+||.-.... -.....|.+.++++++.|....+++|
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec
Confidence 65 667777888888888887754 3466653 568899998654322 22337788899999999999999999
Q ss_pred ecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEec
Q 001163 570 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638 (1134)
Q Consensus 570 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (1134)
+.+| .|.+||++..+.++++.. +. ...++++|+..|.|+||++..-..+..+..
T Consensus 2355 gr~G----~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2355 GRKG----EVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CCcC----cEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 8755 499999998888877664 33 457899999999999999998877776653
No 284
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.92 E-value=0.00023 Score=82.74 Aligned_cols=287 Identities=13% Similarity=0.095 Sum_probs=146.4
Q ss_pred cEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCC-C
Q 001163 778 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND-S 856 (1134)
Q Consensus 778 ~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg-~ 856 (1134)
.|.-..|-.|..+|.++..||.+.-|.++. .+|......-.. --..++.--.|+..+ +
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~--------------------~tg~lsd~Kk~~-lGt~P~~Lr~f~sk~~t 643 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDI--------------------NTGQLSDRKKVT-LGTQPISLRTFSSKSRT 643 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEc--------------------ccceEccccccc-cCCCCcEEEEEeeCCce
Confidence 444555666788999999999988775543 222211110000 023444444555433 3
Q ss_pred eEEEeeCCeEEEEEccCCeEEEEecCCCCCeE-EEEEcCC-CCcEEEEEeCCCcEEEEEcccceE--EEeccCccCceEE
Q 001163 857 YVMSASGGKISLFNMMTFKTMTTFMPPPPAAT-FLAFHPQ-DNNIIAIGMEDSSIQIYNVRVDEV--KTKLKGHQKRITG 932 (1134)
Q Consensus 857 ~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~-~l~~sp~-~~~~la~g~~dg~i~iwd~~~~~~--~~~l~~h~~~V~~ 932 (1134)
.+.+.+|.-..+|.. +++.+.+--. -..+. .+.|+.+ .+..|+++. .+.+++.-++.-+. ++++.-|. ....
T Consensus 644 ~vfa~sdrP~viY~~-n~kLv~spls-~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~-~prr 719 (1096)
T KOG1897|consen 644 AVFALSDRPTVIYSS-NGKLVYSPLS-LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGE-SPRR 719 (1096)
T ss_pred EEEEeCCCCEEEEec-CCcEEEeccc-hHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCC-Chhh
Confidence 455555554444443 2232222100 00111 1112211 223454443 34566665543221 23333332 2445
Q ss_pred EEEeeCCCEEEEEeCC--------------CcEEEEECCCCccccceeeeecCCCCC-CCCCceEEEEcCC-CCEEEEEe
Q 001163 933 LAFSNTLNVLVSSGAD--------------SQLCVWSTDGWEKQASKFLTIPNGRTA-SALADTRVQFHLD-QTHLLAVH 996 (1134)
Q Consensus 933 l~~s~d~~~l~s~s~D--------------g~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~fs~d-g~~l~~~~ 996 (1134)
+++.+....+++.+.. ..++++|-++-+ .+...+.... ....+.++.|..| +.++++|.
T Consensus 720 I~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~-----vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT 794 (1096)
T KOG1897|consen 720 ICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE-----VLSSHEFERNETALSIISCKFTDDPNTYYVVGT 794 (1096)
T ss_pred eEecccceEEEEEecccccchhhcCCcceEEEEEEecCCcee-----EEeeccccccceeeeeeeeeecCCCceEEEEEE
Confidence 5665533333333221 135666655532 2221111111 0134666679888 77877752
Q ss_pred -----------eceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccC
Q 001163 997 -----------ETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLP 1065 (1134)
Q Consensus 997 -----------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 1065 (1134)
.|.|.||....+..+.......-.+.+.++.. -+|++||.- ...|++|+..+.+.+.. -
T Consensus 795 ~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~~~eLr~-------e 864 (1096)
T KOG1897|consen 795 GLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTTERELRI-------E 864 (1096)
T ss_pred EeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEccccceehh-------h
Confidence 47788888877444433321111445555553 277877755 46799999988854321 1
Q ss_pred CCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCCCC
Q 001163 1066 TNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGR 1107 (1134)
Q Consensus 1066 ~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~~~ 1107 (1134)
.+|...+..+.+. ..++.+++|..=+++.+-.....||.
T Consensus 865 ~~~~~~~~aL~l~---v~gdeI~VgDlm~Sitll~y~~~eg~ 903 (1096)
T KOG1897|consen 865 CNISNPIIALDLQ---VKGDEIAVGDLMRSITLLQYKGDEGN 903 (1096)
T ss_pred hcccCCeEEEEEE---ecCcEEEEeeccceEEEEEEeccCCc
Confidence 2455667777665 36789999999998887777666644
No 285
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=8.9e-07 Score=100.23 Aligned_cols=197 Identities=11% Similarity=0.030 Sum_probs=124.9
Q ss_pred CCeeEEEEcCCCCeEEEEEeC---CCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001163 357 SAVKSMDFHPVQQILLVVGTN---MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (1134)
Q Consensus 357 ~~V~~v~fsp~g~~lla~gs~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 433 (1134)
+.+....|||||+++++..+. +..|.++|+.+++... +....+.+....|||||+.|
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEE
Confidence 378899999999974454333 3579999998886543 22345566778899999877
Q ss_pred EEEe-C--CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCC--eEEEEECCCCceeEEec-CCC
Q 001163 434 GVAY-S--KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYIFE-GHE 507 (1134)
Q Consensus 434 as~s-~--dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~-~h~ 507 (1134)
+... . +..|.++|+.+++. + .+..+........|+|||+.+++.+ ...+ .|.+.|+.+|+..+... +..
T Consensus 248 a~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~S-dr~g~~~Iy~~dl~~g~~~rlt~~g~~ 322 (419)
T PRK04043 248 LLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVS-DRLGYPNIFMKKLNSGSVEQVVFHGKN 322 (419)
T ss_pred EEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEE-CCCCCceEEEEECCCCCeEeCccCCCc
Confidence 7543 2 34688888887763 3 2433443344568999999643333 3333 68888988877644332 221
Q ss_pred cCEEEEeccccCCccEEEEecCC---------CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeE
Q 001163 508 SPVYSICPHHKENIQFIFSTATD---------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY 578 (1134)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 578 (1134)
...|+ ++|+.|+..+.. ..|.+.|++.+... .+... .......|+|||+.++..... .+...
T Consensus 323 ----~~~~S--PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~-~~~~~ 393 (419)
T PRK04043 323 ----NSSVS--TYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYL-GNQSA 393 (419)
T ss_pred ----CceEC--CCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEcc-CCcEE
Confidence 12554 555666555433 25777787765443 33322 233468899999999887654 34556
Q ss_pred EEEEeCCCC
Q 001163 579 LVEWNESEG 587 (1134)
Q Consensus 579 i~~wd~~~~ 587 (1134)
+.+.++...
T Consensus 394 L~~~~l~g~ 402 (419)
T PRK04043 394 LGIIRLNYN 402 (419)
T ss_pred EEEEecCCC
Confidence 778887543
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=8.7e-09 Score=109.24 Aligned_cols=241 Identities=13% Similarity=0.221 Sum_probs=168.7
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCC-cee---eeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCe
Q 001163 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG-DEL---RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV 488 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~-~~~---~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~ 488 (1134)
.+.||+..|..++--.+.+-+++++.|.+|++|.++.. ..+ .+..++..|+.+|..+.|..+.+ +++++ |+.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g 805 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG 805 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence 37899999999998889999999999999999998742 222 24457889999999999999887 56554 789
Q ss_pred EEEEECCCCceeEEec-----CCCcCEEEEeccccCCccEEEEe-cCCCcEEEEecCCCCceeeec-----CCCCCeeEE
Q 001163 489 IKVWDAVTGTKQYIFE-----GHESPVYSICPHHKENIQFIFST-ATDGKIKAWLYDNLGSRVDYD-----APGHSSTMM 557 (1134)
Q Consensus 489 i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~-----~~~~~v~~~ 557 (1134)
|.+||.--|+.+..+. +..+.|.++ ++-+..+++.+ +...+|+++|.+..+-...+. ++..-+.++
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 9999988888776332 222334444 33343555554 788999999988766544433 234468899
Q ss_pred EECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEE-EEcCCCceeEEE
Q 001163 558 AYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKF-WDMDNVNLLASI 636 (1134)
Q Consensus 558 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~ 636 (1134)
++.+.|++++.+-. .++|.+.|.++|+.+..+..... ....++ .|....++....|.++.+ |....|......
T Consensus 883 aVa~~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 883 AVADKGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred EeccCcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeecc
Confidence 99999999998754 34699999999999887765443 222222 355566777778888888 988777665554
Q ss_pred ecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEE
Q 001163 637 DADGGLQASPCIRFNKEGILLAVSTNDNGIKILA 670 (1134)
Q Consensus 637 ~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~ 670 (1134)
..... +.. -.-.-|..++++.....+.+|.
T Consensus 957 kpppe--pah--flqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 957 KPPPE--PAH--FLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred CCCCc--chh--hhhccCceeEEeccCcEEEEEe
Confidence 43211 110 0112366677777777777774
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.85 E-value=1.2e-06 Score=87.53 Aligned_cols=209 Identities=15% Similarity=0.147 Sum_probs=138.7
Q ss_pred EEEEcCCCCeEEEeeCCeEEEEEccC--CeEEEE---ecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEe
Q 001163 848 CFALSKNDSYVMSASGGKISLFNMMT--FKTMTT---FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK 922 (1134)
Q Consensus 848 ~v~~s~dg~~la~~sdg~i~lwd~~~--~~~~~~---~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~ 922 (1134)
.++.+.||++||+-.|..|.|=...+ ...+.. .+.....=+.++||| |+.+||.+...|+|++||+...+ +..
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFV 79 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccce-eEE
Confidence 46788999999999998887765432 112222 223344568899999 99999999999999999998544 333
Q ss_pred ccC-------ccCceEEEEEeeCC------CEEEEEeCCCcEEEEECCCCccc---cceeeeecCCCCCCCCCceEEEEc
Q 001163 923 LKG-------HQKRITGLAFSNTL------NVLVSSGADSQLCVWSTDGWEKQ---ASKFLTIPNGRTASALADTRVQFH 986 (1134)
Q Consensus 923 l~~-------h~~~V~~l~~s~d~------~~l~s~s~Dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~l~fs 986 (1134)
+.. -...|..+.|.+-. ..|+....+|.++-|-+..+... ....+.... +.+ .+|.++.++
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~-~yp--~Gi~~~vy~ 156 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSS-HYP--HGINSAVYH 156 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecc-cCC--CceeEEEEc
Confidence 322 23567777775422 24666677888877776432211 122222222 222 579999999
Q ss_pred CCCCEEEEE-----eec-------eEEEEeCCCcccceee--------------------c------c-CCCccCEEEEE
Q 001163 987 LDQTHLLAV-----HET-------QIAIYEAPKLECLKQF--------------------V------P-REASGPITHAT 1027 (1134)
Q Consensus 987 ~dg~~l~~~-----~d~-------~i~iwd~~~~~~~~~~--------------------~------~-~~h~~~v~~~~ 1027 (1134)
|..++|+++ .++ -+.-|.+-++..-... . . ......|-.|.
T Consensus 157 p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmS 236 (282)
T PF15492_consen 157 PKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMS 236 (282)
T ss_pred CCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEE
Confidence 999988884 111 3666765443211110 0 0 11256788999
Q ss_pred EccCCCEEEEEecCCcEEEeecCCCcceeecCCC
Q 001163 1028 YSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPT 1061 (1134)
Q Consensus 1028 ~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~ 1061 (1134)
.||||+.||+...+|.|.+|++.+.+++..+...
T Consensus 237 lSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 237 LSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 9999999999999999999999999988776643
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.83 E-value=4e-08 Score=101.66 Aligned_cols=159 Identities=14% Similarity=0.068 Sum_probs=112.0
Q ss_pred eEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE----EeeceEEEEeC
Q 001163 930 ITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA----VHETQIAIYEA 1005 (1134)
Q Consensus 930 V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~----~~d~~i~iwd~ 1005 (1134)
...+..++++++||.+..+....++++..... ..++........ ..+++.|-.+.....+ +....+.+|..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~~----~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVPK----RPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeeccc----CcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 34456677888888888777777777665432 222333222221 2355666555554444 24466777777
Q ss_pred CCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCC
Q 001163 1006 PKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPN 1085 (1134)
Q Consensus 1006 ~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~ 1085 (1134)
..+.+...+ +|-+-++.+++|||+++++++..|..|+|-.+..-..+. ..+.||..=|..+++- +++
T Consensus 140 ~~~~~~~~l---GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ie------sfclGH~eFVS~isl~----~~~ 206 (390)
T KOG3914|consen 140 DSGRCEPIL---GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIE------SFCLGHKEFVSTISLT----DNY 206 (390)
T ss_pred cccCcchhh---hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchh------hhccccHhheeeeeec----cCc
Confidence 765554444 899999999999999999999999999998876544332 3345788989888775 578
Q ss_pred EEEEEecCCcEEEEeCCCCCC
Q 001163 1086 QFALGLTDGGVYIIEPLEAEG 1106 (1134)
Q Consensus 1086 ~l~s~~~Dg~v~vW~~~~~~~ 1106 (1134)
.|+++|.|++|++||+.++..
T Consensus 207 ~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 207 LLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred eeeecCCCCcEEEEecccCCc
Confidence 899999999999999987664
No 289
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=2e-06 Score=96.58 Aligned_cols=551 Identities=14% Similarity=0.126 Sum_probs=270.1
Q ss_pred EEEEEcCCCCEEEEEeC----CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC
Q 001163 422 NRVMWSPDGTLFGVAYS----KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 497 (1134)
Q Consensus 422 ~~l~~spd~~~las~s~----dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~ 497 (1134)
+-..|+|...++|+++. .|+|-||- ++|+.-+ ..+..-| +++++|+|..- .|+.|=.-|.+.+|...+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr-~Vt~P~h---atSLCWHpe~~--vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR-DVTYPVH---ATSLCWHPEEF--VLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc-cccccee---hhhhccChHHH--HHhhccccceeEEEecCCc
Confidence 44679999999998864 57888883 4444221 1122223 56799999876 7888888999999997777
Q ss_pred ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC----C--CeeEEEECcCCCEE-----
Q 001163 498 TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG----H--SSTMMAYSADGARL----- 566 (1134)
Q Consensus 498 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~----~--~v~~~~~s~~~~~l----- 566 (1134)
+.-.....|..+|..+.|++ +|..++++..-|.|.+|..+..+.......-. . ...+...++++.-+
T Consensus 92 e~htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laK 169 (1416)
T KOG3617|consen 92 ETHTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAK 169 (1416)
T ss_pred eeeeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhh
Confidence 66666677999999999965 55899999999999999887544333221111 1 23345556664322
Q ss_pred -EEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCc
Q 001163 567 -FSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS 645 (1134)
Q Consensus 567 -~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 645 (1134)
++.+ |..+-....-|..++.. +... -.-.|+|..++.++.+|+|+--|- +|+......... .
T Consensus 170 aaVtg-De~alD~~fnwk~~~a~--rs~~---------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS---~- 232 (1416)
T KOG3617|consen 170 AAVTG-DESALDEPFNWKESLAE--RSDE---------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDS---E- 232 (1416)
T ss_pred hhccC-chhhhcccccCccchhh--cccc---------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccc---h-
Confidence 2222 11111112222211111 0000 012467888889999999988774 455554444321 1
Q ss_pred ceEEEcCCCcEEEEEECCCcEEEEEc-cCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccc
Q 001163 646 PCIRFNKEGILLAVSTNDNGIKILAN-ADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAA 724 (1134)
Q Consensus 646 ~~v~~sp~~~~l~~~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 724 (1134)
..+-|.+...-+++...+-.+.++-. ..|. .....
T Consensus 233 vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~---------~ee~~----------------------------------- 268 (1416)
T KOG3617|consen 233 VQMLFMGYCEAISIIIEFLRDCLIFVLAKGT---------SEERC----------------------------------- 268 (1416)
T ss_pred HHHHHhcccceEEEEeeeceeeEEEecCCCc---------hHHhh-----------------------------------
Confidence 23455554444444433333333222 1110 00000
Q ss_pred cccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeee
Q 001163 725 AMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK 804 (1134)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~ 804 (1134)
.+.+++..... ...++++.+.|.++ +.. .+ .......+.+++++..+..+..+...|.+.+|.
T Consensus 269 -~vk~sgk~Ggr--qGgiA~sEssGvLr---------~~e--Ky---g~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~ 331 (1416)
T KOG3617|consen 269 -AVKVSGKLGGR--QGGIACSESSGVLR---------KSE--KY---GLELGEGILCMCYGEKEIRLWAGTKEGNVTIWL 331 (1416)
T ss_pred -hhhhccccCCc--cCcccccccccccc---------CCc--ch---hhhcCCceEEEEEeccceEEEecccCCcEEEee
Confidence 00000000000 00122222222111 000 01 112457899999999999999999999999995
Q ss_pred cCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEE--------------EE
Q 001163 805 WPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISL--------------FN 870 (1134)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~l--------------wd 870 (1134)
-.... .....++..|.+.+... ..+.|+.+.|.|--..+++-+...+.+ |-
T Consensus 332 ~v~~~------f~g~p~~d~w~l~~~~e---------~~g~I~~i~Wg~~k~~~avn~~~~v~ll~E~~l~~~h~~~~~A 396 (1416)
T KOG3617|consen 332 DVNKG------FQGDPTIDVWTLNGKRE---------SLGKISLIRWGPIKSTAAVNTEEDVVLLGENSLTVKHRGKMAA 396 (1416)
T ss_pred ecCcc------ccCCCCcceEEecCchh---------hccceEEEEeccccchhhhhhhhheeeeccCchHHHHhhhhHH
Confidence 43221 22222445565543322 346788888888655555444222222 21
Q ss_pred ccCCe----EEEEecCC------CCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEE--eccCccCceEEEEEeeC
Q 001163 871 MMTFK----TMTTFMPP------PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKT--KLKGHQKRITGLAFSNT 938 (1134)
Q Consensus 871 ~~~~~----~~~~~~~~------~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~--~l~~h~~~V~~l~~s~d 938 (1134)
+.+.. +...+.|- .-++..++.+. .-| +..+..+|.+|++.+.-.+. ........-+.++....
T Consensus 397 ~q~ss~S~~L~hc~sGv~~~l~~~~~~~gi~l~e---~~l-vvwNgr~v~~y~lq~SG~la~~~~~tF~cet~~la~~nq 472 (1416)
T KOG3617|consen 397 IQTSSNSFTLLHCTSGVSQDLKLSIPSAGICLGE---KQL-VVWNGRTVVTYDLQTSGSLATIQCTTFSCETTSLAIVNQ 472 (1416)
T ss_pred hhhcCCceEEEeeccchhhhhhhccchhhheecc---ceE-EEEcCceEEEEEecccchhHHHhhhhhccccchHhHhhc
Confidence 11111 11111110 11233344432 122 23345577788875321111 11112222333333322
Q ss_pred CCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCcccceeeccC
Q 001163 939 LNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPR 1017 (1134)
Q Consensus 939 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~ 1017 (1134)
+ +.+...|. |.+..+.+--.. .+...+-.. .-+-+.--|.++++. ..+.++-+|+...+........
T Consensus 473 N--~ycies~~-Vfvrt~qGtv~q---~i~~seiEg------~~~~ldi~g~~l~v~t~~~~~k~~dvsr~e~ka~~~~~ 540 (1416)
T KOG3617|consen 473 N--LYCIESDK-VFVRTLQGTVRQ---EISLSEIEG------VVVLLDIMGELLIVQTVSTVAKRLDVSRAELKAVSYFS 540 (1416)
T ss_pred c--eEEeccCc-EEEEecchhhhh---hccchhccC------ceehhhhccceeEEeehHHHHHHhhhhhhccccccccc
Confidence 2 33333333 555555441111 111111100 112233456777774 3345555665544333222211
Q ss_pred -C-----CccCEEEEEEccCCCE--EEEEecC----CcEEEeecCCCcceee--cCCCcccCCCCCCCceeEEEEecCCC
Q 001163 1018 -E-----ASGPITHATYSCDSQS--IYVAFEE----GSVGVLTASTLRLRCR--INPTAYLPTNPSLRVYPLVIAGNPTD 1083 (1134)
Q Consensus 1018 -~-----h~~~v~~~~~s~dg~~--l~s~s~D----g~i~vwd~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~p~~ 1083 (1134)
+ .-+.++.+..+..|.. +..+..+ .++.+||.+.++.... +.+...- +.-+..-.++.+-|..++
T Consensus 541 s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~~~~~lE~ETNa-kkEs~ts~pvr~fWD~~e 619 (1416)
T KOG3617|consen 541 SDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQMMNHLEPETNA-KKESSTSPPVRFFWDENE 619 (1416)
T ss_pred ccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHHHhhccCccccc-cccccCCCCceeeecCCC
Confidence 1 1345555555555543 3333333 4799999999876432 1111100 011222245666777767
Q ss_pred CCEEEEEe
Q 001163 1084 PNQFALGL 1091 (1134)
Q Consensus 1084 ~~~l~s~~ 1091 (1134)
+.+|++-.
T Consensus 620 pRllv~E~ 627 (1416)
T KOG3617|consen 620 PRLLVVEC 627 (1416)
T ss_pred CcEEEEEe
Confidence 77777543
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.78 E-value=7.4e-08 Score=99.77 Aligned_cols=163 Identities=16% Similarity=0.137 Sum_probs=111.6
Q ss_pred eeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEE---
Q 001163 359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV--- 435 (1134)
Q Consensus 359 V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las--- 435 (1134)
+..+.++|.|+ ++|++..+....+.++..... ..++++.. .+.. .-+++.|-.+...+..
T Consensus 65 ~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~---------~v~~---~~~ai~~~~~~~sv~v~dk 127 (390)
T KOG3914|consen 65 PALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVS---------CVPK---RPTAISFIREDTSVLVADK 127 (390)
T ss_pred ccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEe---------eccc---CcceeeeeeccceEEEEee
Confidence 34556677777 678887777776777655443 11222211 0111 2233444444444444
Q ss_pred EeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe-cCCCcCEEEEe
Q 001163 436 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EGHESPVYSIC 514 (1134)
Q Consensus 436 ~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~ 514 (1134)
.+....+.+|....+.+. .+-||-..++.|+|+||++ +|+|+..|..|+|-....-..+..| -||+.-|..++
T Consensus 128 agD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is 201 (390)
T KOG3914|consen 128 AGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS 201 (390)
T ss_pred cCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeeee
Confidence 455566777776654432 3668999999999999998 8999999999999877665555554 57999999998
Q ss_pred ccccCCccEEEEecCCCcEEEEecCCCCceeee
Q 001163 515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY 547 (1134)
Q Consensus 515 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 547 (1134)
..++ ..|+++|.|++|++||+.+++....+
T Consensus 202 l~~~---~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 202 LTDN---YLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred eccC---ceeeecCCCCcEEEEecccCCccccc
Confidence 7432 57999999999999999988776443
No 291
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.77 E-value=3.1e-08 Score=119.53 Aligned_cols=225 Identities=13% Similarity=0.188 Sum_probs=163.3
Q ss_pred CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecC-CCc
Q 001163 430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG-HES 508 (1134)
Q Consensus 430 ~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-h~~ 508 (1134)
++.......++...-|..+.+... +..|-..|.++.=+|... +.+||+.||.|++|....+..+..++. -..
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~~-----~k~~v~~v~r~~sHp~~~--~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s 2252 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASVM-----IKHPVENVRRMTSHPSDP--YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNS 2252 (2439)
T ss_pred cccCCcccCCccccceecccceeE-----eecccCceeeecCCCCCc--eEEecCCCceEEEEeccCCCeEEEeeccCcc
Confidence 344444445555566665544322 334556688888788777 789999999999999999988887753 237
Q ss_pred CEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe
Q 001163 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 588 (1134)
Q Consensus 509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 588 (1134)
.|+.+.|+. .|+.+..+..||.+.+|... .+.......|......+.|-. ..+++.+.+.+ +..+.+||..-..
T Consensus 2253 ~vtr~~f~~--qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d-~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2253 RVTRSRFNH--QGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD-NRNVCLWDTLLPP 2326 (2439)
T ss_pred hhhhhhhcc--cCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCC-CCcccchhcccCc
Confidence 788887754 45788889999999999876 445555666776777777765 56777766544 4469999965432
Q ss_pred eEEEe-cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEE
Q 001163 589 VKRTY-HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK 667 (1134)
Q Consensus 589 ~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~ 667 (1134)
...-. ..|.. .++++++.|....|++||.+|.|++||++..+++..++. ++ ...++++|+..|.++
T Consensus 2327 ~~s~v~~~H~~-gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ik 2393 (2439)
T KOG1064|consen 2327 MNSLVHTCHDG-GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIK 2393 (2439)
T ss_pred ccceeeeecCC-CceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceE
Confidence 22212 44444 899999999999999999999999999998887776643 33 567899999999999
Q ss_pred EEEccCCceeEEEe
Q 001163 668 ILANADGIRLLRTV 681 (1134)
Q Consensus 668 iw~~~~~~~~~~~~ 681 (1134)
||++..- ..+..+
T Consensus 2394 Iw~~s~~-~ll~~~ 2406 (2439)
T KOG1064|consen 2394 IWRLSEF-GLLHTF 2406 (2439)
T ss_pred EEEcccc-chhhcC
Confidence 9998765 344333
No 292
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.74 E-value=8.5e-09 Score=115.48 Aligned_cols=216 Identities=16% Similarity=0.240 Sum_probs=159.4
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC-CC-eEE
Q 001163 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-DR-VIK 490 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-d~-~i~ 490 (1134)
.+..|+...+|++||-+.+.|+.|+..|.|+++++.+|.... ..++|..+|+.+.=+.||.. +++.+. .. -..
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~--~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST--QLTSSSSSSPLSA 1170 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce--eeeeccccCchHH
Confidence 367899999999999999999999999999999999998665 67899999999999999984 444433 33 467
Q ss_pred EEECCC-CceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee-cCC---CCCeeEEEECcCCCE
Q 001163 491 VWDAVT-GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-DAP---GHSSTMMAYSADGAR 565 (1134)
Q Consensus 491 iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~---~~~v~~~~~s~~~~~ 565 (1134)
+|++.. +...++|.+. .++.|+... ..-+.|.......+||+.+......+ ... ...-....|+|+.++
T Consensus 1171 LW~~~s~~~~~Hsf~ed----~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDED----KAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HhccccccCcccccccc----ceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 999763 5556666542 345665443 33344555567889999987766653 221 123467889999988
Q ss_pred EEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCc
Q 001163 566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS 645 (1134)
Q Consensus 566 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 645 (1134)
++--| .+||.+..+.++.|..... . ..-.|+|.|..++.-++ |||+++.+++.....- .-
T Consensus 1245 IlndG---------vLWDvR~~~aIh~FD~ft~-~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~L----dq 1304 (1516)
T KOG1832|consen 1245 ILNDG---------VLWDVRIPEAIHRFDQFTD-Y-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSL----DQ 1304 (1516)
T ss_pred EeeCc---------eeeeeccHHHHhhhhhhee-c-ccccccCCCceEEeech-----hhhhHHHHHHhcCccc----cc
Confidence 87532 4899999888887766542 1 22459999999998876 9999999988877543 22
Q ss_pred ceEEEcCCCcEEEE
Q 001163 646 PCIRFNKEGILLAV 659 (1134)
Q Consensus 646 ~~v~~sp~~~~l~~ 659 (1134)
..+.|+..|..++.
T Consensus 1305 c~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1305 CAVTFNSTGDVMYA 1318 (1516)
T ss_pred eEEEeccCccchhh
Confidence 57889888877654
No 293
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.74 E-value=6.1e-06 Score=93.51 Aligned_cols=197 Identities=11% Similarity=-0.001 Sum_probs=122.7
Q ss_pred CEEEEEEcCCCCE-EEEEeCC---CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC--CeEEEEE
Q 001163 420 SVNRVMWSPDGTL-FGVAYSK---HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED--RVIKVWD 493 (1134)
Q Consensus 420 ~V~~l~~spd~~~-las~s~d---g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d--~~i~iwd 493 (1134)
.+....|||||+. ++..+.+ ..|.++|+.+++... +....+......|+|||+. ++++.+.+ ..|.++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~----lt~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK----IASSQGMLVVSDVSKDGSK-LLLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE----EecCCCcEEeeEECCCCCE-EEEEEccCCCcEEEEEE
Confidence 7889999999985 6654443 569999998886432 3335556677889999996 34444444 4688889
Q ss_pred CCCCceeEEecCCCcCEEEEeccccCCccEEEEec-CCC--cEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEe
Q 001163 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDG--KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCG 570 (1134)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 570 (1134)
+.+++.. .+..+........|+ +||+.|+..+ ..+ .|.+.|+..++...... .+. ....|+|||+.++...
T Consensus 264 l~~g~~~-~LT~~~~~d~~p~~S--PDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~--~~~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 264 TNTKTLT-QITNYPGIDVNGNFV--EDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK--NNSSVSTYKNYIVYSS 337 (419)
T ss_pred CCCCcEE-EcccCCCccCccEEC--CCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCC--cCceECCCCCEEEEEE
Confidence 8777643 344333322233554 4555555444 334 46667776555433222 121 1348999999998877
Q ss_pred cCCC-----CCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC---CeEEEEEcCCC
Q 001163 571 TNKE-----GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE---FMIKFWDMDNV 630 (1134)
Q Consensus 571 ~~~~-----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~ 630 (1134)
...+ +...|.+.|+.++........ . ......|+|||+.++....+ ..+.+.+++..
T Consensus 338 ~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~--~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 338 RETNNEFGKNTFNLYLISTNSDYIRRLTAN-G--VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred cCCCcccCCCCcEEEEEECCCCCeEECCCC-C--CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 5432 224689999988865433332 1 22357899999988776532 23666677543
No 294
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.74 E-value=3.6e-06 Score=87.15 Aligned_cols=183 Identities=13% Similarity=0.154 Sum_probs=127.4
Q ss_pred EEEEcCCCCeEEEee------CCeEEEEEcc-CCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeC---------------
Q 001163 848 CFALSKNDSYVMSAS------GGKISLFNMM-TFKTMTTFMPPPPAATFLAFHPQDNNIIAIGME--------------- 905 (1134)
Q Consensus 848 ~v~~s~dg~~la~~s------dg~i~lwd~~-~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~--------------- 905 (1134)
..+||+||++|++.. .|.|-|||.. +.+.+.++..+.-.-..+.+.| |++.|+++-.
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 578999999999874 2679999998 7888899988777778888999 7866766521
Q ss_pred ---CCcEEEEEcccceEEEe--c--cCccCceEEEEEeeCCCEEEEEeCCCc-------EEEEECCCCccccceeeeecC
Q 001163 906 ---DSSIQIYNVRVDEVKTK--L--KGHQKRITGLAFSNTLNVLVSSGADSQ-------LCVWSTDGWEKQASKFLTIPN 971 (1134)
Q Consensus 906 ---dg~i~iwd~~~~~~~~~--l--~~h~~~V~~l~~s~d~~~l~s~s~Dg~-------i~iwd~~~~~~~~~~~~~~~~ 971 (1134)
+-++...|..+|+++.. + ..|...|..+++.++|..++-.-..|. |-+++-.. . ...+....
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~--~~~~~~p~ 209 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--A--LRLLPAPE 209 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--c--ceeccCCh
Confidence 22466677788888766 5 348889999999999876665433221 33333222 1 11111111
Q ss_pred CC-CCCCCCceEEEEcCCCCEEEEE--eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEec
Q 001163 972 GR-TASALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFE 1040 (1134)
Q Consensus 972 ~~-~~~~~~v~~l~fs~dg~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 1040 (1134)
.. ......+-+++++++|.+++++ ..+.+.+||..+++.+.... -..+..++-.+++ +++|.+.
T Consensus 210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----LPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----cCceeeeeecCCc-eEEeCCC
Confidence 11 0111468999999999998885 67899999999999887776 3466777777676 6665543
No 295
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.73 E-value=1.7e-06 Score=91.66 Aligned_cols=224 Identities=15% Similarity=0.153 Sum_probs=140.5
Q ss_pred CCeEEEEEccCCeEEEEecCC--CCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCC
Q 001163 863 GGKISLFNMMTFKTMTTFMPP--PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLN 940 (1134)
Q Consensus 863 dg~i~lwd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 940 (1134)
+|+|..||..+|+.+...... .....+..+. ++..+++++.++.+..||..+|+.+.++.. .+.+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 578999999999999887532 2222322332 345677778999999999999998877664 22222212 23455
Q ss_pred EEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCcccceeeccCCC
Q 001163 941 VLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPREA 1019 (1134)
Q Consensus 941 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h 1019 (1134)
.++.++.|+.+..+|..+|+..-.......... ..........++..++++ .++.|..+|..+|+.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeecccccccc----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 667777888999999988874321111111110 111222333336666665 589999999999999877764221
Q ss_pred c--c------CEEEEEEccCCCEEEEEecCCc-EEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEE
Q 001163 1020 S--G------PITHATYSCDSQSIYVAFEEGS-VGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALG 1090 (1134)
Q Consensus 1020 ~--~------~v~~~~~s~dg~~l~s~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~ 1090 (1134)
. . .+..-....++ .++.++.++. +.+ |+.+++.+.... .. .+.++ ... ++..|+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~--------~~~~~---~~~-~~~~l~~~ 218 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-IS--------GIYSL---PSV-DGGTLYVT 218 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS---------ECEC---EEC-CCTEEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CC--------CccCC---cee-eCCEEEEE
Confidence 1 1 12233333345 7777777775 555 999999664322 11 12221 223 56788888
Q ss_pred ecCCcEEEEeCCCCCCCcc
Q 001163 1091 LTDGGVYIIEPLEAEGRWG 1109 (1134)
Q Consensus 1091 ~~Dg~v~vW~~~~~~~~~~ 1109 (1134)
+.|+.|..||+.+.+..|.
T Consensus 219 ~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 219 SSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ETTTEEEEEETTTTEEEEE
T ss_pred eCCCEEEEEECCCCCEEeE
Confidence 8999999999999998885
No 296
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.72 E-value=6.7e-06 Score=93.93 Aligned_cols=307 Identities=11% Similarity=0.070 Sum_probs=166.4
Q ss_pred cEEEEecCCCcEEEEecCCCCceeeecCCCC----------Cee-EEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeE
Q 001163 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGH----------SST-MMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590 (1134)
Q Consensus 522 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----------~v~-~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 590 (1134)
..++.++.++.+..+|..+++.......... .+. .+.. ++..++.++. ++.++.+|.++|+.+
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~----~g~l~ald~~tG~~~ 143 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSE----KGQVYALNAEDGEVA 143 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcC----CCEEEEEECCCCCCc
Confidence 4566666677777777776666655443221 000 0111 3445555543 346999999999988
Q ss_pred EEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC--CCcEEEEEECCCcEEE
Q 001163 591 RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK--EGILLAVSTNDNGIKI 668 (1134)
Q Consensus 591 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp--~~~~l~~~~~dg~i~i 668 (1134)
.+...... ....... .+..++.+..+|.|+.+|..+|+.+-............. .-+| .+..++.++.+|.+..
T Consensus 144 W~~~~~~~-~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~-~~sP~v~~~~v~~~~~~g~v~a 219 (394)
T PRK11138 144 WQTKVAGE-ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG-ESAPATAFGGAIVGGDNGRVSA 219 (394)
T ss_pred ccccCCCc-eecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC-CCCCEEECCEEEEEcCCCEEEE
Confidence 87765432 1111122 245677788899999999999999887754311000000 0112 2335667788899988
Q ss_pred EEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccc
Q 001163 669 LANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAV 748 (1134)
Q Consensus 669 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 748 (1134)
++..++..... ....... + .
T Consensus 220 ~d~~~G~~~W~-~~~~~~~---------------------------------------------------~------~-- 239 (394)
T PRK11138 220 VLMEQGQLIWQ-QRISQPT---------------------------------------------------G------A-- 239 (394)
T ss_pred EEccCChhhhe-eccccCC---------------------------------------------------C------c--
Confidence 88887732221 1100000 0 0
Q ss_pred ccc-ceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCC
Q 001163 749 EKS-RIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQP 827 (1134)
Q Consensus 749 ~~i-~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~ 827 (1134)
..+ +++++ ...++ + .+..+++++.+|.+..+|....+ .+|..
T Consensus 240 ~~~~~~~~~------------------~~sP~----v--~~~~vy~~~~~g~l~ald~~tG~-------------~~W~~ 282 (394)
T PRK11138 240 TEIDRLVDV------------------DTTPV----V--VGGVVYALAYNGNLVALDLRSGQ-------------IVWKR 282 (394)
T ss_pred cchhccccc------------------CCCcE----E--ECCEEEEEEcCCeEEEEECCCCC-------------EEEee
Confidence 000 00000 00000 1 12345555566666665543211 23322
Q ss_pred CCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCC-CCeEEEEEcCCCCcEEEEEeC
Q 001163 828 PSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPP-PAATFLAFHPQDNNIIAIGME 905 (1134)
Q Consensus 828 ~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~la~g~~ 905 (1134)
..+. ...+.. ++..+..++ +|.+..+|..+++.+....... ....+..+. + .+|+.++.
T Consensus 283 ~~~~--------------~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~-g~l~v~~~ 343 (394)
T PRK11138 283 EYGS--------------VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--N-GYLVVGDS 343 (394)
T ss_pred cCCC--------------ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--C-CEEEEEeC
Confidence 1110 011122 234444444 8999999999998776543211 223333333 3 46778899
Q ss_pred CCcEEEEEcccceEEEeccCccCceEE-EEEeeCCCEEEEEeCCCcEEEEEC
Q 001163 906 DSSIQIYNVRVDEVKTKLKGHQKRITG-LAFSNTLNVLVSSGADSQLCVWST 956 (1134)
Q Consensus 906 dg~i~iwd~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l~s~s~Dg~i~iwd~ 956 (1134)
||.+++.|..+|+.+...+-....+.+ ..+ .+..|+.++.||.|..++.
T Consensus 344 ~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 344 EGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 999999999999988776544333332 222 2457888899999888764
No 297
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=1.4e-06 Score=97.88 Aligned_cols=110 Identities=15% Similarity=0.326 Sum_probs=83.6
Q ss_pred eEEEEcCCCCeEEEEEeC----CCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001163 360 KSMDFHPVQQILLVVGTN----MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (1134)
Q Consensus 360 ~~v~fsp~g~~lla~gs~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las 435 (1134)
+-..|+|... ++|+++. .|.|.||- ++|+.....+ -.-.+++++|+|..-.||.
T Consensus 19 ti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--------------------~P~hatSLCWHpe~~vLa~ 76 (1416)
T KOG3617|consen 19 TISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT--------------------YPVHATSLCWHPEEFVLAQ 76 (1416)
T ss_pred cccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc--------------------cceehhhhccChHHHHHhh
Confidence 4457999888 5676653 47788875 4555332111 1224567999999999999
Q ss_pred EeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC
Q 001163 436 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT 496 (1134)
Q Consensus 436 ~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~ 496 (1134)
|-.-|.+.+|...+.+.-. ....|..+|..+.||++|. .++|+..-|.|.+|....
T Consensus 77 gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 77 GWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeee
Confidence 9999999999988755322 4567999999999999999 899999999999998763
No 298
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.70 E-value=3.3e-07 Score=90.93 Aligned_cols=249 Identities=15% Similarity=0.238 Sum_probs=162.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCc--eeeeeeeeecCC------------CCEEEEEEecCCCceEEEE
Q 001163 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD--ELRNHLEIEAHV------------GSVNDLAFSYPNKQLSVVT 482 (1134)
Q Consensus 417 h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~--~~~~~~~l~~h~------------~~V~~v~~s~~~~~~~l~s 482 (1134)
....|+++.|...|.|||+|...|.|.++.-.... ..+-+..+++|. ..|..+.|..++..-.++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45689999999999999999999999999765432 122233456665 3578899988776556777
Q ss_pred EeCCCeEEEEECCCCce-------------------e-----------------------EEe-cCCCcCEEEEeccccC
Q 001163 483 CGEDRVIKVWDAVTGTK-------------------Q-----------------------YIF-EGHESPVYSICPHHKE 519 (1134)
Q Consensus 483 ~s~d~~i~iwd~~~~~~-------------------~-----------------------~~~-~~h~~~v~~~~~~~~~ 519 (1134)
.+.|++|++|.+..... + +.. ..|..-|+++.+..
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-- 182 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-- 182 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC--
Confidence 78899999998754310 0 001 24666677777643
Q ss_pred CccEEEEecCCCcEEEEecCCCCceee---ecCCCC-----CeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeE-
Q 001163 520 NIQFIFSTATDGKIKAWLYDNLGSRVD---YDAPGH-----SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK- 590 (1134)
Q Consensus 520 ~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~~~~-----~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~- 590 (1134)
|...++++ .|=.|.+|+++....... +..+.. -|++..|+|....++.-+. ..+.|++-|++...+.
T Consensus 183 D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs---SkG~Ikl~DlRq~alcd 258 (460)
T COG5170 183 DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS---SKGEIKLNDLRQSALCD 258 (460)
T ss_pred chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec---CCCcEEehhhhhhhhcc
Confidence 43556554 578899999876543332 222322 4778889986554433332 2445999998743211
Q ss_pred ---E----EecCCC-------CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEecCCC----------CCCc
Q 001163 591 ---R----TYHGLG-------KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV-NLLASIDADGG----------LQAS 645 (1134)
Q Consensus 591 ---~----~~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~----------~~~v 645 (1134)
. .+.+.. -..|..+.|+++|+++++-+. -+|++||.+.. .++.++..|.. ...|
T Consensus 259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDai 337 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAI 337 (460)
T ss_pred CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccce
Confidence 0 111110 125677899999988887654 68999999754 46666643321 1122
Q ss_pred ---ceEEEcCCCcEEEEEECCCcEEEEEcc
Q 001163 646 ---PCIRFNKEGILLAVSTNDNGIKILANA 672 (1134)
Q Consensus 646 ---~~v~~sp~~~~l~~~~~dg~i~iw~~~ 672 (1134)
..+.|+-|...+.+|+..+..-++-..
T Consensus 338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeeEEEEecCCcccccccccccceeeeccc
Confidence 357888888999999998888887643
No 299
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.70 E-value=2e-06 Score=84.07 Aligned_cols=149 Identities=9% Similarity=-0.007 Sum_probs=107.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce
Q 001163 420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK 499 (1134)
Q Consensus 420 ~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~ 499 (1134)
.+.++++|+|++++++.+....|..|.+...............++.=.+..|+..+. .+|++..||++.|||++.-..
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEeccccc
Confidence 388999999999999999999999999976554332223444555567889998877 799999999999999987544
Q ss_pred eEE-----ecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC--------CCeeEEEECcCCCEE
Q 001163 500 QYI-----FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG--------HSSTMMAYSADGARL 566 (1134)
Q Consensus 500 ~~~-----~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l 566 (1134)
... -..|.+.+..+.|++.+.-++|+..-.-+.+.+.|+++......+.... ..|....|+.++..+
T Consensus 238 pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~ 317 (344)
T KOG4532|consen 238 PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESN 317 (344)
T ss_pred chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccc
Confidence 332 2358899999999866555677777777889999998866444332211 125556666666555
Q ss_pred EEEe
Q 001163 567 FSCG 570 (1134)
Q Consensus 567 ~~~~ 570 (1134)
.+..
T Consensus 318 ~v~~ 321 (344)
T KOG4532|consen 318 DVKN 321 (344)
T ss_pred cccc
Confidence 5443
No 300
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.70 E-value=3.3e-06 Score=82.51 Aligned_cols=239 Identities=13% Similarity=0.059 Sum_probs=153.3
Q ss_pred CeEEEee-CCeEEEEEccCCeEEE-EecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCc--eE
Q 001163 856 SYVMSAS-GGKISLFNMMTFKTMT-TFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKR--IT 931 (1134)
Q Consensus 856 ~~la~~s-dg~i~lwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~--V~ 931 (1134)
-+||.|+ .|...+|...+.+... ....+...|+-+.=.-+...-+..++.|.++++.++..+... +..|... +.
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~--~~~h~~~~~~n 162 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK--FAVHNQNLTQN 162 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc--ceeecccccee
Confidence 4677775 7999999998655433 333344433322111112235667788999999988754322 2223332 78
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCccc
Q 001163 932 GLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLEC 1010 (1134)
Q Consensus 932 ~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~ 1010 (1134)
++++++|++++++.++...|..|.++...... ..+...... +.-.+..|+.....+|+ ..||++.|||+.....
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~---~~~~~a~t~--D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYI---ENIYEAPTS--DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCcccee---eeeEecccC--CCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence 89999999999999999999999998743222 222222221 34577889998888888 5999999999987654
Q ss_pred ceeec---cCCCccCEEEEEEccCCCE--EEEEecCCcEEEeecCCCcceeecCCCcccCCCCC-CCceeEEEEecCCCC
Q 001163 1011 LKQFV---PREASGPITHATYSCDSQS--IYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPS-LRVYPLVIAGNPTDP 1084 (1134)
Q Consensus 1011 ~~~~~---~~~h~~~v~~~~~s~dg~~--l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~p~~~ 1084 (1134)
..... ...|.+.+..+.||+-|.. |+..-.-+.+.+-|+.++.-..++.+..-.-..|. ..++.. .|+- ++
T Consensus 238 pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt--~f~~-~n 314 (344)
T KOG4532|consen 238 PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGT--NFNN-EN 314 (344)
T ss_pred chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccc--cccC-CC
Confidence 33222 2358999999999987754 44444558899999999887665553322211233 336655 4444 45
Q ss_pred CEEEEEecCCcEEEEeCCCCC
Q 001163 1085 NQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus 1085 ~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
.-+.+.+.+ .+.-|++.+..
T Consensus 315 ~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 315 ESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred cccccccch-hhheeeccccc
Confidence 555555554 36777776544
No 301
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.69 E-value=2.6e-07 Score=91.70 Aligned_cols=118 Identities=15% Similarity=0.278 Sum_probs=83.0
Q ss_pred CCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCe---EEEEecCCC-----CCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 001163 841 NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFK---TMTTFMPPP-----PAATFLAFHPQDNNIIAIGMEDSSIQIY 912 (1134)
Q Consensus 841 ~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~---~~~~~~~~~-----~~v~~l~~sp~~~~~la~g~~dg~i~iw 912 (1134)
.|...+.++.|..|...++++.|=.|-+|+++--. .+..+++|. .-|++..|+|.....+...+..|.|++-
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 48888999999999999999999999999985322 233455554 2488999999777888889999999999
Q ss_pred EcccceE------EE--e--------ccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCC
Q 001163 913 NVRVDEV------KT--K--------LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGW 959 (1134)
Q Consensus 913 d~~~~~~------~~--~--------l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~ 959 (1134)
|++...+ +. . +.+-...|..+.|+++|+++++-+. -+|+|||+...
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 9873211 00 0 1112245666777777777766543 35777776653
No 302
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.69 E-value=1.8e-05 Score=79.21 Aligned_cols=246 Identities=10% Similarity=0.090 Sum_probs=135.0
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCC
Q 001163 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 440 (1134)
Q Consensus 361 ~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg 440 (1134)
.++.++||+ +||+ -.|..|.|=.....-.....+.. +.+...-.=.-++||||+.+||.+...|
T Consensus 2 ~~~~~~~Gk-~lAi-~qd~~iEiRsa~Ddf~si~~kcq--------------VpkD~~PQWRkl~WSpD~tlLa~a~S~G 65 (282)
T PF15492_consen 2 HLALSSDGK-LLAI-LQDQCIEIRSAKDDFSSIIGKCQ--------------VPKDPNPQWRKLAWSPDCTLLAYAESTG 65 (282)
T ss_pred ceeecCCCc-EEEE-EeccEEEEEeccCCchheeEEEe--------------cCCCCCchheEEEECCCCcEEEEEcCCC
Confidence 467788998 4443 45667777665543221111111 1222333456799999999999999999
Q ss_pred EEEEEEccCCceeee--eeeee-cCCCCEEEEEEecCC-----CceEEEEEeCCCeEEEEECCC-----CceeEEec--C
Q 001163 441 IVHLYTYHGGDELRN--HLEIE-AHVGSVNDLAFSYPN-----KQLSVVTCGEDRVIKVWDAVT-----GTKQYIFE--G 505 (1134)
Q Consensus 441 ~v~iwd~~~~~~~~~--~~~l~-~h~~~V~~v~~s~~~-----~~~~l~s~s~d~~i~iwd~~~-----~~~~~~~~--~ 505 (1134)
+|+++|+........ ...+. .-...|..+.|.+-. .. .|+.-..+|.++-+-+.. .+..++|. .
T Consensus 66 ~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~-ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~ 144 (282)
T PF15492_consen 66 TIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSY-ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSS 144 (282)
T ss_pred eEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccce-eEEEEeccceeeeEEEEcccCCcceeeEEEEecc
Confidence 999999986543210 00011 123567777786532 11 355556677776665432 23334433 2
Q ss_pred -CCcCEEEEeccccCCccEEEEecC-CCcEEEEecCCCCceeeecCCCCCeeEEEE---CcCCCEEEEEecCCCC--CeE
Q 001163 506 -HESPVYSICPHHKENIQFIFSTAT-DGKIKAWLYDNLGSRVDYDAPGHSSTMMAY---SADGARLFSCGTNKEG--ESY 578 (1134)
Q Consensus 506 -h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~---s~~~~~l~~~~~~~~~--~~~ 578 (1134)
+...|.++.+++.. ++|+.|+. ...-..+ ......+++-.+ +|..+.+. ...+... ...
T Consensus 145 ~yp~Gi~~~vy~p~h--~LLlVgG~~~~~~~~s-----------~a~~~GLtaWRiL~~~Pyyk~v~-~~~~~~~~~~~~ 210 (282)
T PF15492_consen 145 HYPHGINSAVYHPKH--RLLLVGGCEQNQDGMS-----------KASSCGLTAWRILSDSPYYKQVT-SSEDDITASSKR 210 (282)
T ss_pred cCCCceeEEEEcCCC--CEEEEeccCCCCCccc-----------cccccCceEEEEcCCCCcEEEcc-ccCccccccccc
Confidence 46789999998766 56665553 2210000 011112222222 12221111 1111000 001
Q ss_pred EEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEec
Q 001163 579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638 (1134)
Q Consensus 579 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (1134)
..+|.+-+.+... ..+.....|..+..+|||..|++...+|.|.+|++.+-++......
T Consensus 211 ~~~~~~~~~~~fs-~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 211 RGLLRIPSFKFFS-RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred cceeeccceeeee-ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 2233333222211 1233444799999999999999999999999999998777766654
No 303
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.69 E-value=2.8e-05 Score=80.70 Aligned_cols=208 Identities=19% Similarity=0.158 Sum_probs=139.1
Q ss_pred CeeEEEEcC-CCCeEEEee-CCe-EEEEEccCCeEEEEecCCCCCe--EEEEEcCCCCcEEEEEeC-----CCcEEEEEc
Q 001163 845 AVPCFALSK-NDSYVMSAS-GGK-ISLFNMMTFKTMTTFMPPPPAA--TFLAFHPQDNNIIAIGME-----DSSIQIYNV 914 (1134)
Q Consensus 845 ~v~~v~~s~-dg~~la~~s-dg~-i~lwd~~~~~~~~~~~~~~~~v--~~l~~sp~~~~~la~g~~-----dg~i~iwd~ 914 (1134)
....++.+| ++..++.+. -|+ ..+||..+++....+....+.- ---+||+ ||++|++.-+ .|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEEC
Confidence 345788888 455566666 454 8999999999998887655443 2478999 8888887643 479999999
Q ss_pred c-cceEEEeccCccCceEEEEEeeCCCEEEEEeC------------------CCcEEEEECCCCccccceeeeecCCCCC
Q 001163 915 R-VDEVKTKLKGHQKRITGLAFSNTLNVLVSSGA------------------DSQLCVWSTDGWEKQASKFLTIPNGRTA 975 (1134)
Q Consensus 915 ~-~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~------------------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 975 (1134)
. +.+.+..+..|.-.--.+.+.|||+.|+.+-. +-.+..-|..+|+......+ +....
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L--p~~~~- 161 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL--PPDLH- 161 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec--Ccccc-
Confidence 9 66778888887766677889999988776521 22344455555553322111 11111
Q ss_pred CCCCceEEEEcCCCCEEEEEe-ec-------eEEEEeCCCcccceeecc-----CCCccCEEEEEEccCCCEEEEEe-cC
Q 001163 976 SALADTRVQFHLDQTHLLAVH-ET-------QIAIYEAPKLECLKQFVP-----REASGPITHATYSCDSQSIYVAF-EE 1041 (1134)
Q Consensus 976 ~~~~v~~l~fs~dg~~l~~~~-d~-------~i~iwd~~~~~~~~~~~~-----~~h~~~v~~~~~s~dg~~l~s~s-~D 1041 (1134)
..+++.+++.+||..++... .+ -|.+++... .+..+.. ..-..-+-+|+++.+|.++++.+ .-
T Consensus 162 -~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG 238 (305)
T PF07433_consen 162 -QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG 238 (305)
T ss_pred -ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence 14699999999998777631 11 144444332 2222211 11246789999999999876555 55
Q ss_pred CcEEEeecCCCcceeecC
Q 001163 1042 GSVGVLTASTLRLRCRIN 1059 (1134)
Q Consensus 1042 g~i~vwd~~~~~~~~~~~ 1059 (1134)
+.+.+||..+++++....
T Consensus 239 g~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 239 GRVAVWDAATGRLLGSVP 256 (305)
T ss_pred CEEEEEECCCCCEeeccc
Confidence 889999999999886655
No 304
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.69 E-value=3.7e-07 Score=100.93 Aligned_cols=296 Identities=12% Similarity=0.197 Sum_probs=187.2
Q ss_pred EEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC-
Q 001163 351 MTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD- 429 (1134)
Q Consensus 351 ~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 429 (1134)
..++-.+.+.++..+|.|+-+ |.++.-| +.+-|+...-.... | +..--.-.|..+.|||.
T Consensus 19 lsl~v~~~~~a~si~p~grdi-~lAsr~g-l~i~dld~p~~ppr-----~------------l~h~tpw~vad~qws~h~ 79 (1081)
T KOG0309|consen 19 LSLKVDGGFNAVSINPSGRDI-VLASRQG-LYIIDLDDPFTPPR-----W------------LHHITPWQVADVQWSPHP 79 (1081)
T ss_pred eEEEecCcccceeeccccchh-hhhhhcC-eEEEeccCCCCCce-----e------------eeccCcchhcceecccCC
Confidence 346678899999999999975 5555544 55666654321110 0 00111235667788874
Q ss_pred -CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc-eeEEecCCC
Q 001163 430 -GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-KQYIFEGHE 507 (1134)
Q Consensus 430 -~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~ 507 (1134)
-.+-++......-.+|++.....-.....+.||...|+.+.|.|.... .+++++.|..+..||+++.. .+..+..-.
T Consensus 80 a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~ 158 (1081)
T KOG0309|consen 80 AKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTSSWR 158 (1081)
T ss_pred CCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeeeccc
Confidence 334444444555789998765444444568899999999999998887 79999999999999998764 455555444
Q ss_pred cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCce-eeecCCCCCeeEEEECcC-CCEEEEEecCCCCCeEEEEEeCC
Q 001163 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR-VDYDAPGHSSTMMAYSAD-GARLFSCGTNKEGESYLVEWNES 585 (1134)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~ 585 (1134)
..-..+.|+... ..+.+.+..+.|++||.+.+... ..+..+...|..+.|..- ...+.+++. +++|..||..
T Consensus 159 s~asqVkwnyk~--p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~----d~tvkfw~y~ 232 (1081)
T KOG0309|consen 159 SAASQVKWNYKD--PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSN----DGTVKFWDYS 232 (1081)
T ss_pred ccCceeeecccC--cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCC----CCceeeeccc
Confidence 555667876544 33555566788999999876544 445566667777777653 234555543 5569999987
Q ss_pred CCeeEEEecCCCCCceEEEEEcCCCCEEEEEe--CCCeEEE---------EEcC-CCceeEEEecCCCCCCcceEEEcCC
Q 001163 586 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKF---------WDMD-NVNLLASIDADGGLQASPCIRFNKE 653 (1134)
Q Consensus 586 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i---------wd~~-~~~~~~~~~~~~~~~~v~~v~~sp~ 653 (1134)
............+.++..-++.|-|.-.++-- .+..+.+ |+.. ..+++..+.+| .+.|....|-..
T Consensus 233 kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH--~D~V~eFlWR~r 310 (1081)
T KOG0309|consen 233 KSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGH--DDVVLEFLWRKR 310 (1081)
T ss_pred ccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCc--chHHHHHhhhhc
Confidence 65433333333334566666666554333211 1123333 3332 23567777755 556655555332
Q ss_pred ----------CcEEEEEECCCcEEEEEccCC
Q 001163 654 ----------GILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 654 ----------~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
.-.|++-+.|.++++|-+.+.
T Consensus 311 ~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 311 KECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred ccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 237899999999999988653
No 305
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.66 E-value=2.9e-05 Score=88.70 Aligned_cols=189 Identities=15% Similarity=0.074 Sum_probs=113.4
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEecCCCc-CE-E-----EEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC
Q 001163 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHES-PV-Y-----SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG 551 (1134)
Q Consensus 479 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~-~v-~-----~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 551 (1134)
.++.++.++.+.-+|..+|+.+........ .+ . .+.-.+.-.+..++.++.++.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 477778889999999999998876643220 00 0 0000011123567788889999999999888887766543
Q ss_pred CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCc----eEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001163 552 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS----VGVVQFDTTKNRFLAAGDEFMIKFWDM 627 (1134)
Q Consensus 552 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~iwd~ 627 (1134)
....+..+. ++ .++.+.. ++.+..+|..+|+.+..+....... ..+... .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v~-~~-~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVVS-DG-LVLVHTS----NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEEE-CC-EEEEECC----CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 211111121 33 4444432 4469999999999988776432100 011111 1346777888999999999
Q ss_pred CCCceeEEEecCCCC--C---CcceEEEcC--CCcEEEEEECCCcEEEEEccCCc
Q 001163 628 DNVNLLASIDADGGL--Q---ASPCIRFNK--EGILLAVSTNDNGIKILANADGI 675 (1134)
Q Consensus 628 ~~~~~~~~~~~~~~~--~---~v~~v~~sp--~~~~l~~~~~dg~i~iw~~~~~~ 675 (1134)
.+|+.+......... . ....+..+| .+..+++++.+|.+..+|..++.
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence 999876654321110 0 011111223 34567777788999998888773
No 306
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.64 E-value=3.1e-05 Score=82.11 Aligned_cols=219 Identities=19% Similarity=0.203 Sum_probs=138.9
Q ss_pred EEEEcC-CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEe-cCCCceEEEEEeCCCeEEEEECCCCcee
Q 001163 423 RVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS-YPNKQLSVVTCGEDRVIKVWDAVTGTKQ 500 (1134)
Q Consensus 423 ~l~~sp-d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s-~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 500 (1134)
+++|.+ ++.++++--..+.|..|+..++.... +.... ...+++. +++. ++.+..++ +.++|..+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----~~~~~--~~G~~~~~~~g~---l~v~~~~~-~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----IDLPG--PNGMAFDRPDGR---LYVADSGG-IAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----EESSS--EEEEEEECTTSE---EEEEETTC-EEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----EecCC--CceEEEEccCCE---EEEEEcCc-eEEEecCCCcEE
Confidence 578888 77777777789999999999876422 22122 6777887 6654 55555544 455599888654
Q ss_pred EEecC-----CCcCEEEEeccccCCccEEEEecCC--------CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEE
Q 001163 501 YIFEG-----HESPVYSICPHHKENIQFIFSTATD--------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF 567 (1134)
Q Consensus 501 ~~~~~-----h~~~v~~~~~~~~~~~~~l~s~s~d--------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 567 (1134)
..... .....+.+++. ++|++.++.... |.|..++.. .........-.....++|+|+++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd--~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVD--PDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE---TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEEc--CCCCEEEEecCCCccccccccceEEECCC--CeEEEEecCcccccceEECCcchhee
Confidence 43322 34557778875 455766665433 446556555 22222222234567899999999887
Q ss_pred EEecCCCCCeEEEEEeCCC--Cee--EEEec-CCCC-CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCC
Q 001163 568 SCGTNKEGESYLVEWNESE--GAV--KRTYH-GLGK-RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG 641 (1134)
Q Consensus 568 ~~~~~~~~~~~i~~wd~~~--~~~--~~~~~-~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 641 (1134)
.+.. ....|..+++.. +.. ...+. .... .....+++..+|+..++....+.|.+++.+ |+.+..+...
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-- 223 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP-- 223 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S--
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC--
Confidence 6542 244588888753 211 22221 1111 147789999999888887789999999988 8888888765
Q ss_pred CCCcceEEEc-CCCcEEEEEE
Q 001163 642 LQASPCIRFN-KEGILLAVST 661 (1134)
Q Consensus 642 ~~~v~~v~~s-p~~~~l~~~~ 661 (1134)
...+++++|. ++.+.|++.+
T Consensus 224 ~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 224 VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp SSSEEEEEEESTTSSEEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEe
Confidence 3478899994 6666655443
No 307
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.57 E-value=1.7e-07 Score=94.56 Aligned_cols=164 Identities=15% Similarity=0.086 Sum_probs=123.3
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEE
Q 001163 363 DFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIV 442 (1134)
Q Consensus 363 ~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v 442 (1134)
+||-+-.-.-++.+.+-.|-+-|+++|.... + .-.+.|.++.|.-.++++..|..+|.|
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRngeI 276 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRNGEI 276 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccCCcE
Confidence 6664322122344556678999999886432 2 256789999999999999999999999
Q ss_pred EEEEccCCce--eeeeeeeecCCCCEEEEEEec-CCCceEEEEEeCCCeEEEEECCCCce---eEEecCCCcCEEEEecc
Q 001163 443 HLYTYHGGDE--LRNHLEIEAHVGSVNDLAFSY-PNKQLSVVTCGEDRVIKVWDAVTGTK---QYIFEGHESPVYSICPH 516 (1134)
Q Consensus 443 ~iwd~~~~~~--~~~~~~l~~h~~~V~~v~~s~-~~~~~~l~s~s~d~~i~iwd~~~~~~---~~~~~~h~~~v~~~~~~ 516 (1134)
...|++.+.. ..+.. ---|...|+++.... +++ +|++.+.+|.|++||.+.-++ +.++.||.+.-.-+-++
T Consensus 277 ~~iDLR~rnqG~~~~a~-rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~ 353 (425)
T KOG2695|consen 277 FVIDLRCRNQGNGWCAQ-RLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAH 353 (425)
T ss_pred EEEEeeecccCCCcceE-EEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeecccccccccccc
Confidence 9999986521 11111 223999999998877 555 799999999999999987776 88999997766666666
Q ss_pred ccCCccEEEEecCCCcEEEEecCCCCceeeecCC
Q 001163 517 HKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP 550 (1134)
Q Consensus 517 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 550 (1134)
-.+....+++++.|...|+|.++.+.....+...
T Consensus 354 v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 354 VKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 6666678999999999999999977666555443
No 308
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.56 E-value=1.9e-06 Score=83.84 Aligned_cols=209 Identities=14% Similarity=0.231 Sum_probs=126.6
Q ss_pred eeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeC
Q 001163 359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS 438 (1134)
Q Consensus 359 V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~ 438 (1134)
|+.+.|+.+- .++++..++.+......++.+.. .|+-.....++ ..+..|+++-.+=+.+--++.+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~~--~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDPF--KVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcCce--eeeeccCCCCCcccccccCCceEecCC
Confidence 6677777654 56888888877777766554332 22222111111 123345555555555667889999999
Q ss_pred CCEEEEEEccCCceeeeeeeee-cCCCCEEEEEEecCCCceEEEEEe-----CCCeEEEEECCCCceeEEecCCCcCEEE
Q 001163 439 KHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYPNKQLSVVTCG-----EDRVIKVWDAVTGTKQYIFEGHESPVYS 512 (1134)
Q Consensus 439 dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s-----~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 512 (1134)
||.+.+.+.+.-..+. .... .|.+. .+.+....+. ++.++. .-+..+.|+++..+.+..-......|.+
T Consensus 110 dg~~~v~s~~~~~~~~--~~i~~~~~~~-as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLALM--SRIPSIHSGS-ASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHHHhhh--hhcccccccc-cccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 9999999987622111 1111 12221 1223333444 333332 1224456665543332221222334889
Q ss_pred EeccccCCccEEEEecCCCcEEEEecCCCCcee-eecCCCCCeeEEEECc-CCCEEEEEecCCCCCeEEEEEeCCC
Q 001163 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV-DYDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYLVEWNESE 586 (1134)
Q Consensus 513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~ 586 (1134)
++-+|... +++++|+.||.+-+||.+...... .+..|..++..+-|+| ++..|++++.+++ +.-||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs----lw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS----LWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc----EEEEcCCC
Confidence 99888765 788999999999999998764333 3566778999999998 5678999887654 99999764
No 309
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.55 E-value=0.00016 Score=76.61 Aligned_cols=220 Identities=17% Similarity=0.145 Sum_probs=142.7
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc-CCCCEEEEEeCC
Q 001163 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS-PDGTLFGVAYSK 439 (1134)
Q Consensus 361 ~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-pd~~~las~s~d 439 (1134)
++.|.+....|+++.-..+.|..|+..+++.... . . .....+++. +++.+ +.+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------~-~-~~~~G~~~~~~~g~l-~v~~~~ 60 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------D-L-PGPNGMAFDRPDGRL-YVADSG 60 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------E-S-SSEEEEEEECTTSEE-EEEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------e-c-CCCceEEEEccCCEE-EEEEcC
Confidence 6789985555878887889999999988865321 1 1 127778888 56554 444455
Q ss_pred CEEEEEEccCCceeeeeeeee--c-CCCCEEEEEEecCCCceEEEEEeCC--------CeEEEEECCCCceeEEecCCCc
Q 001163 440 HIVHLYTYHGGDELRNHLEIE--A-HVGSVNDLAFSYPNKQLSVVTCGED--------RVIKVWDAVTGTKQYIFEGHES 508 (1134)
Q Consensus 440 g~v~iwd~~~~~~~~~~~~l~--~-h~~~V~~v~~s~~~~~~~l~s~s~d--------~~i~iwd~~~~~~~~~~~~h~~ 508 (1134)
+ +.++|..+++. ....... . .....+.+++.++|. +.++.... +.|..++.. ++...... .-.
T Consensus 61 ~-~~~~d~~~g~~-~~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~ 134 (246)
T PF08450_consen 61 G-IAVVDPDTGKV-TVLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLG 134 (246)
T ss_dssp C-EEEEETTTTEE-EEEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EES
T ss_pred c-eEEEecCCCcE-EEEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Ccc
Confidence 5 55669988864 3333332 2 345688999999998 56665543 457777766 55443333 345
Q ss_pred CEEEEeccccCCccEE-EEecCCCcEEEEecCCCCc-----eeeecCCCC--CeeEEEECcCCCEEEEEecCCCCCeEEE
Q 001163 509 PVYSICPHHKENIQFI-FSTATDGKIKAWLYDNLGS-----RVDYDAPGH--SSTMMAYSADGARLFSCGTNKEGESYLV 580 (1134)
Q Consensus 509 ~v~~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~-----~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 580 (1134)
..+.|+|+++. +.| ++-+..+.|..+++..... ......... ..-.+++..+|+..++... ...|.
T Consensus 135 ~pNGi~~s~dg--~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I~ 208 (246)
T PF08450_consen 135 FPNGIAFSPDG--KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRIV 208 (246)
T ss_dssp SEEEEEEETTS--SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEEE
T ss_pred cccceEECCcc--hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEEE
Confidence 57889987654 544 5777888899999875443 111222222 3678999999987776542 33599
Q ss_pred EEeCCCCeeEEEecCCCCCceEEEEE-cCCCCEEEEEe
Q 001163 581 EWNESEGAVKRTYHGLGKRSVGVVQF-DTTKNRFLAAG 617 (1134)
Q Consensus 581 ~wd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~ 617 (1134)
++|.. |+.+..+..... .+++++| .++.+.|+..+
T Consensus 209 ~~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 209 VFDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEEE
T ss_pred EECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEEe
Confidence 99988 888888877644 7889999 46666666554
No 310
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.54 E-value=0.00013 Score=71.52 Aligned_cols=118 Identities=14% Similarity=0.071 Sum_probs=84.6
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCE
Q 001163 362 MDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHI 441 (1134)
Q Consensus 362 v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~ 441 (1134)
+..-+|.+.+++.|+..+.+.--|..+|+..-. . -....|-+-+.- -|++++.|...|.
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We-------~-------------ilg~RiE~sa~v-vgdfVV~GCy~g~ 74 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWE-------A-------------ILGVRIECSAIV-VGDFVVLGCYSGG 74 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEee-------h-------------hhCceeeeeeEE-ECCEEEEEEccCc
Confidence 344456677889999999999999999986532 1 112233332222 5788999999999
Q ss_pred EEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecC
Q 001163 442 VHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 505 (1134)
Q Consensus 442 v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 505 (1134)
+++-+.++|+....+..+..-. + .....+++. ++..|+.|++.+..|..+..+++..+-
T Consensus 75 lYfl~~~tGs~~w~f~~~~~vk--~-~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 75 LYFLCVKTGSQIWNFVILETVK--V-RAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred EEEEEecchhheeeeeehhhhc--c-ceEEcCCCc--eEEEecCCCcEEEecccccceEEeccc
Confidence 9999999997766443332211 1 223456777 899999999999999999999988653
No 311
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.54 E-value=4.7e-05 Score=79.95 Aligned_cols=205 Identities=15% Similarity=0.181 Sum_probs=129.8
Q ss_pred EEEEcCCCCeEEEee---CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcc-cceEEEe-
Q 001163 848 CFALSKNDSYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVR-VDEVKTK- 922 (1134)
Q Consensus 848 ~v~~s~dg~~la~~s---dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~-~~~~~~~- 922 (1134)
.+++|.||+++.+.. .-+|.|-|+...+.+.++.. ..+..+--+ +++-+.+-+.||.+.-..+. .|+...+
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PGC~~iyP~--~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PGCWLIYPS--GNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TSEEEEEEE--ETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--CCEEEEEec--CCCceEEEecCCceEEEEECCCCCEeEee
Confidence 457778888887775 35689999999998888753 233333323 33457788889999999887 4554322
Q ss_pred ---ccCccCceE-EEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCC---CC-CCCCceEEEEcCCCCEEEE
Q 001163 923 ---LKGHQKRIT-GLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGR---TA-SALADTRVQFHLDQTHLLA 994 (1134)
Q Consensus 923 ---l~~h~~~V~-~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~---~~-~~~~v~~l~fs~dg~~l~~ 994 (1134)
|..-.+++. .-+++..+..++-.+.+|.|+--|+................. .. ..++-.-+++++....|.+
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 222222222 334555555666678889888888887654333333222100 00 0145567899887766666
Q ss_pred E----ee-------ceEEEEeCCCcccceeeccCCCccCEEEEEEccCCC-EEEEEe-cCCcEEEeecCCCcceeecC
Q 001163 995 V----HE-------TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQ-SIYVAF-EEGSVGVLTASTLRLRCRIN 1059 (1134)
Q Consensus 995 ~----~d-------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s-~Dg~i~vwd~~~~~~~~~~~ 1059 (1134)
- .+ ..|.+||+.+++.+..+.. ...+.+|..|.|.+ +|++.+ .++.+.+||..+|+.+.++.
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 2 21 2489999999999999975 34677999999888 455544 57999999999999988877
No 312
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=1.7e-06 Score=88.83 Aligned_cols=119 Identities=13% Similarity=0.197 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHhhhcCHHHHHHHHHHhcCCC--------ccHHHHHHHhhcccHHHHHHHHccc-CcccCCccchhHHHH
Q 001163 5 SRELVFLILQFLDEEKFKETVHKLEQDSGFF--------FNMRYFEDMVTNGEWDEVEKYLSGF-TKVDDNRYSMKIFFE 75 (1134)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~l~~Esg~~--------~~~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~ 75 (1134)
+.-+-|+|..||..+||.++|..|-++|.+. .++..++++|++|+...|+.-.+.- ..+.. ....+-|.
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK--~~S~lEf~ 192 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKK--EESSLEFQ 192 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh--ccchhhhH
Confidence 3456899999999999999999999999976 2367799999999999999888765 22222 22337799
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccc
Q 001163 76 IRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFR 125 (1134)
Q Consensus 76 i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~ 125 (1134)
++.|.|+||+..+++.+|+.+.++.+.|......++++....+|.++...
T Consensus 193 lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t 242 (389)
T KOG0396|consen 193 LRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYT 242 (389)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCcccc
Confidence 99999999999999999999999999999877778888888888886554
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.1e-06 Score=89.93 Aligned_cols=297 Identities=13% Similarity=0.150 Sum_probs=192.7
Q ss_pred ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163 775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 854 (1134)
Q Consensus 775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d 854 (1134)
|..-|+.+. ..-.+++++++-||.++.|.-.. ..|......+.. |-..|..++.+.|
T Consensus 8 hrd~i~hv~-~tka~fiiqASlDGh~KFWkKs~--------------------isGvEfVKhFra--HL~~I~sl~~S~d 64 (558)
T KOG0882|consen 8 HRDVITHVF-PTKAKFIIQASLDGHKKFWKKSR--------------------ISGVEFVKHFRA--HLGVILSLAVSYD 64 (558)
T ss_pred ccceeeeEe-eehhheEEeeecchhhhhcCCCC--------------------ccceeehhhhHH--HHHHHHhhhcccc
Confidence 555565554 34567899999999999994221 022222222332 7788889999999
Q ss_pred CCeEEEee--CCeEEEEEccCCeEEEEecCCCC-CeEEEEEcCCCC--cEEE-EEeCCCcEEEEEcccc--eEEEeccCc
Q 001163 855 DSYVMSAS--GGKISLFNMMTFKTMTTFMPPPP-AATFLAFHPQDN--NIIA-IGMEDSSIQIYNVRVD--EVKTKLKGH 926 (1134)
Q Consensus 855 g~~la~~s--dg~i~lwd~~~~~~~~~~~~~~~-~v~~l~~sp~~~--~~la-~g~~dg~i~iwd~~~~--~~~~~l~~h 926 (1134)
|.++.+.+ |..++++|+.+...+.-++...- .-.+...++ +. ..|| +...+|.+.|+|-... +....-.-|
T Consensus 65 g~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~sk-Gd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH 143 (558)
T KOG0882|consen 65 GWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSK-GDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH 143 (558)
T ss_pred ceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCC-CCeeeeEEeecccCCCcEEECCcCCcCccceecccc
Confidence 99999965 68899999987766644432221 222333344 21 1333 3456789999997543 333444569
Q ss_pred cCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCcccccee-eee-------cCCCCCCCCCceEEEEcCCCCEEEE-Eee
Q 001163 927 QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKF-LTI-------PNGRTASALADTRVQFHLDQTHLLA-VHE 997 (1134)
Q Consensus 927 ~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~-------~~~~~~~~~~v~~l~fs~dg~~l~~-~~d 997 (1134)
..+|..+.+++-+..++|....|.|.-|.... ..+..+. +.. .-+.........++.|+|+|..+.+ +.|
T Consensus 144 ~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~D 222 (558)
T KOG0882|consen 144 FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG-PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPD 222 (558)
T ss_pred cCceEEEEeeccccceeeccccceeEeecCCC-cccCccccccccccccchhhcccccccCccceEEccccCcccccCcc
Confidence 99999999999999999999999999999874 1110000 000 0011111145789999999999998 789
Q ss_pred ceEEEEeCCCcccceeecc------------------------------CCC-ccCEEEEEEccCCCEEEEEecCCcEEE
Q 001163 998 TQIAIYEAPKLECLKQFVP------------------------------REA-SGPITHATYSCDSQSIYVAFEEGSVGV 1046 (1134)
Q Consensus 998 ~~i~iwd~~~~~~~~~~~~------------------------------~~h-~~~v~~~~~s~dg~~l~s~s~Dg~i~v 1046 (1134)
..|++++..+|+.+..+.. ..| ...-+.++|...|.+|+-++-=| |+|
T Consensus 223 rkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikv 301 (558)
T KOG0882|consen 223 RKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKV 301 (558)
T ss_pred cEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEE
Confidence 9999999999987655431 111 22446788999999999888776 999
Q ss_pred eecCCCcceeecCCCccc-------CC----CCCC------CceeEEEEecCCCCCEEEEEecCCcEEEE
Q 001163 1047 LTASTLRLRCRINPTAYL-------PT----NPSL------RVYPLVIAGNPTDPNQFALGLTDGGVYII 1099 (1134)
Q Consensus 1047 wd~~~~~~~~~~~~~~~~-------~~----~h~~------~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW 1099 (1134)
.++.+++..+.+..-..+ .. +|.. ...++ +-+.+ |+.+++++-..+.++++
T Consensus 302 in~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~-~~~~~-dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 302 INLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPL-LEFQK-DPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcc-cccCC-CCeEEEeeeecceEEEE
Confidence 999999876655421100 00 0111 11111 22445 67888888888888888
No 314
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.1e-05 Score=81.71 Aligned_cols=249 Identities=12% Similarity=0.107 Sum_probs=149.6
Q ss_pred ccccCCCCEEEEEEcCCCC-EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEE
Q 001163 413 LSSDYTASVNRVMWSPDGT-LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~spd~~-~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i 491 (1134)
++.+|...|..++|||..+ ++..++.+..|+|.|+++...+. .+..| ..+++++|.-|..+ +|..|...|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5788999999999999766 88899999999999999976554 45556 78999999999876 8999999999999
Q ss_pred EECCCCce-eEEecC--CCcCEEEEecccc----CCccEEEEecCCCcEEEEecCCCC--ceeeecCC-CCCeeEEEECc
Q 001163 492 WDAVTGTK-QYIFEG--HESPVYSICPHHK----ENIQFIFSTATDGKIKAWLYDNLG--SRVDYDAP-GHSSTMMAYSA 561 (1134)
Q Consensus 492 wd~~~~~~-~~~~~~--h~~~v~~~~~~~~----~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~-~~~v~~~~~s~ 561 (1134)
+|++..+- +..+.+ ...+|..++.-+. +.|.+++..+.+ +..|++.... ........ .+.+.++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986543 223322 2345555442211 112345544433 3456554322 12212222 33556677777
Q ss_pred CCCEEEEEecCCCCCeEEE----EEeCCCCeeEEEec----CCCCCce---EEEEEcCCCCEEEEEe-CCCeEEEEEcCC
Q 001163 562 DGARLFSCGTNKEGESYLV----EWNESEGAVKRTYH----GLGKRSV---GVVQFDTTKNRFLAAG-DEFMIKFWDMDN 629 (1134)
Q Consensus 562 ~~~~l~~~~~~~~~~~~i~----~wd~~~~~~~~~~~----~~~~~~v---~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 629 (1134)
..+.++...........++ -.|-.+|..+..-. +...... ..+.-.++.++++..+ +.+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 6666666554322111111 12223333332111 1110011 1122345556666544 678899999999
Q ss_pred CceeEEEecCCCCCCcceEEEcC-CC-cEEEEEECCCcEEEEEcc
Q 001163 630 VNLLASIDADGGLQASPCIRFNK-EG-ILLAVSTNDNGIKILANA 672 (1134)
Q Consensus 630 ~~~~~~~~~~~~~~~v~~v~~sp-~~-~~l~~~~~dg~i~iw~~~ 672 (1134)
++.++++... .+|..+.... ++ .+|++-+ |..++||..+
T Consensus 421 ~evvQ~l~~~---epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALS---EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccC---cceeecceeecCCcchhhhee-cceEEEEecC
Confidence 9999998764 3555555443 33 4666555 4577887643
No 315
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.49 E-value=4.3e-05 Score=80.79 Aligned_cols=222 Identities=16% Similarity=0.098 Sum_probs=138.0
Q ss_pred CCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccc
Q 001163 438 SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH 517 (1134)
Q Consensus 438 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 517 (1134)
.+|+|..||..+|+.+.... +..-.....+.. .+++. .+++++.++.+..||..+|+.+.++.. ...+... +
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~-~~~~~~~~~~~~-~~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~---~ 72 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYD-LGPGIGGPVATA-VPDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGA---P 72 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEE-CSSSCSSEEETE-EEETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSG---E
T ss_pred CCCEEEEEECCCCCEEEEEE-CCCCCCCccceE-EEeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-cccccce---e
Confidence 36889999999998876542 221112222222 33455 577778999999999999999887764 2221111 1
Q ss_pred cCCccEEEEecCCCcEEEEecCCCCceeee-cCCC--C-CeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEe
Q 001163 518 KENIQFIFSTATDGKIKAWLYDNLGSRVDY-DAPG--H-SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY 593 (1134)
Q Consensus 518 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~--~-~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 593 (1134)
...+..++.++.++.++.+|..+++..... .... . .........++..++.+.. .+.|..+|+++|+.+..+
T Consensus 73 ~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 73 VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEE
T ss_pred eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEe
Confidence 112245677778889999999888887773 3221 1 1122233334777777654 335999999999998888
Q ss_pred cCCCCCc---------eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC
Q 001163 594 HGLGKRS---------VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 664 (1134)
Q Consensus 594 ~~~~~~~---------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg 664 (1134)
....... +..-....++ .++.++.++.+..+|..+++.+.... . ..+.. ....++..|++++.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~---~~~~~-~~~~~~~~l~~~~~~~ 222 (238)
T PF13360_consen 149 PVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-I---SGIYS-LPSVDGGTLYVTSSDG 222 (238)
T ss_dssp ESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-S---S-ECE-CEECCCTEEEEEETTT
T ss_pred ecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-C---CCccC-CceeeCCEEEEEeCCC
Confidence 7644211 1122222334 77777777754444999999664332 1 11222 1345777888888999
Q ss_pred cEEEEEccCCcee
Q 001163 665 GIKILANADGIRL 677 (1134)
Q Consensus 665 ~i~iw~~~~~~~~ 677 (1134)
.+..||..+++..
T Consensus 223 ~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 223 RLYALDLKTGKVV 235 (238)
T ss_dssp EEEEEETTTTEEE
T ss_pred EEEEEECCCCCEE
Confidence 9999999998543
No 316
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.47 E-value=1.4e-06 Score=84.67 Aligned_cols=216 Identities=15% Similarity=0.111 Sum_probs=129.0
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEE------------EeccCccCceEEEEEeeCCCEEEEEeCCCcEEEE
Q 001163 887 ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK------------TKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 954 (1134)
Q Consensus 887 v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~------------~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iw 954 (1134)
++.+.++- ...|+++..++.+......++.+. ..+..|+++-.+=+.+--++.++++..||.+.++
T Consensus 39 ~~~~~~v~--~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLSA--EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeechh--hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 55556653 446666666666555554433322 2333344433333334456789999999999999
Q ss_pred ECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE------EeeceEEEEeCCCcccceeeccCCCccCEEEEEE
Q 001163 955 STDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA------VHETQIAIYEAPKLECLKQFVPREASGPITHATY 1028 (1134)
Q Consensus 955 d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~------~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~ 1028 (1134)
+.+..... ..++...+.. ..+.+.-..+..+.+ -.-+..+.|++...+.+..-. .....|++++-
T Consensus 117 s~~~~~~~---~~~i~~~~~~----~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~--~~~~~v~~l~~ 187 (319)
T KOG4714|consen 117 STDKDLAL---MSRIPSIHSG----SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK--KALDAVTALCS 187 (319)
T ss_pred echHHHhh---hhhccccccc----ccccceeecccEEecCCcceEeeccceeeecccccccccccc--cccccchhhhC
Confidence 97662111 1111111111 122223334444444 233556677765333221111 11345999999
Q ss_pred ccCCCE-EEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCCCC
Q 001163 1029 SCDSQS-IYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGR 1107 (1134)
Q Consensus 1029 s~dg~~-l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~~~ 1107 (1134)
.|..+. +++|++||.+-+||+.+..... .+...|...+..+ -|+|.++..|++++.||++.-||.+..-
T Consensus 188 hp~qq~~v~cgt~dg~~~l~d~rn~~~p~------S~l~ahk~~i~eV--~FHpk~p~~Lft~sedGslw~wdas~~~-- 257 (319)
T KOG4714|consen 188 HPAQQHLVCCGTDDGIVGLWDARNVAMPV------SLLKAHKAEIWEV--HFHPKNPEHLFTCSEDGSLWHWDASTTF-- 257 (319)
T ss_pred CcccccEEEEecCCCeEEEEEcccccchH------HHHHHhhhhhhhe--eccCCCchheeEecCCCcEEEEcCCCce--
Confidence 987665 6678889999999998874322 2223577888877 8999999999999999999999988533
Q ss_pred ccCCCCCCCCCCCCCC
Q 001163 1108 WGTSPPNENGAGPSTT 1123 (1134)
Q Consensus 1108 ~~~~~~~~~~~~~~~~ 1123 (1134)
.+.+|.+..-++|.++
T Consensus 258 l~i~~~~s~~s~WLsg 273 (319)
T KOG4714|consen 258 LSISNQASVISSWLSG 273 (319)
T ss_pred EEecCccccccccccC
Confidence 3355666555555543
No 317
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.47 E-value=0.00079 Score=66.15 Aligned_cols=138 Identities=9% Similarity=-0.096 Sum_probs=90.2
Q ss_pred cEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCce
Q 001163 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSV 601 (1134)
Q Consensus 522 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 601 (1134)
.+++.|+..+.+.--|..++....+.... ..+.+-+.- -|.+++.+..++ .+++.+.++|.....+..... .-
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy~g----~lYfl~~~tGs~~w~f~~~~~-vk 96 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCYSG----GLYFLCVKTGSQIWNFVILET-VK 96 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEccC----cEEEEEecchhheeeeeehhh-hc
Confidence 67788888888888887776665543332 223222221 466788877644 499999999988877766543 22
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEE
Q 001163 602 GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI 668 (1134)
Q Consensus 602 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~i 668 (1134)
......+++..+.+|+.|+..+..|..+...+...+..+. ...+-+..|-...|..+...|.+.-
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~~sly~a~t~G~vla 161 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGDGSLYAAITAGAVLA 161 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCCceEEEEeccceEEE
Confidence 2345678899999999999999999999999988765433 2233444552233444444454433
No 318
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.46 E-value=9e-05 Score=82.95 Aligned_cols=265 Identities=14% Similarity=0.161 Sum_probs=147.9
Q ss_pred cCCCCeEEEEE--------eCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001163 365 HPVQQILLVVG--------TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 436 (1134)
Q Consensus 365 sp~g~~lla~g--------s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~ 436 (1134)
|||++++|..- +..+.+.|||+.+++... +......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 67888766532 234678999999876543 12225688899999999999998
Q ss_pred eCCCEEEEEEccCCceeeeeeeeec-------C---------CCCEEEEEEecCCCceEEEEEeC-CCe-----------
Q 001163 437 YSKHIVHLYTYHGGDELRNHLEIEA-------H---------VGSVNDLAFSYPNKQLSVVTCGE-DRV----------- 488 (1134)
Q Consensus 437 s~dg~v~iwd~~~~~~~~~~~~l~~-------h---------~~~V~~v~~s~~~~~~~l~s~s~-d~~----------- 488 (1134)
. ++.|.+++..++...+. +..| - -+.-..+.||||+++ |+.... +..
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~~~~~~~ 135 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYPLPDYSP 135 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEEEEEESS
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEEeeccCC
Confidence 6 46799999887754331 1222 0 112356889999995 443321 222
Q ss_pred ------------------------EEEEECCCCceeE-E-e---cCCCcCEEEEeccccCCccEEEE--ecCCC---cEE
Q 001163 489 ------------------------IKVWDAVTGTKQY-I-F---EGHESPVYSICPHHKENIQFIFS--TATDG---KIK 534 (1134)
Q Consensus 489 ------------------------i~iwd~~~~~~~~-~-~---~~h~~~v~~~~~~~~~~~~~l~s--~s~dg---~i~ 534 (1134)
+.|+|+.+++... . . ..-...+..+.|.++. ..|+. .+.+. .+.
T Consensus 136 ~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~--~~l~~~~~nR~q~~~~l~ 213 (353)
T PF00930_consen 136 PDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDG--KRLWVQWLNRDQNRLDLV 213 (353)
T ss_dssp STESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETT--EEEEEEEEETTSTEEEEE
T ss_pred ccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCC--cEEEEEEcccCCCEEEEE
Confidence 2234444443221 0 0 1123335555664433 42222 22222 255
Q ss_pred EEecCCCCceeeecCC-CC---CeeEEEEC-cCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCce-EEEEEcC
Q 001163 535 AWLYDNLGSRVDYDAP-GH---SSTMMAYS-ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSV-GVVQFDT 608 (1134)
Q Consensus 535 vwd~~~~~~~~~~~~~-~~---~v~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-~~~~~~~ 608 (1134)
++|..++......... .. ......+. +++..++..+. ++|-..|.+++...+.......+. -.| ..+.+++
T Consensus 214 ~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~~lT~G~--~~V~~i~~~d~ 290 (353)
T PF00930_consen 214 LCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPRQLTSGD--WEVTSILGWDE 290 (353)
T ss_dssp EEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEEESS-SS--S-EEEEEEEEC
T ss_pred EEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEcccccceeccccCc--eeecccceEcC
Confidence 6677665554433221 12 22345554 78887777766 677888999999888755333332 245 4477888
Q ss_pred CCCEEEEEe-C----CCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEE
Q 001163 609 TKNRFLAAG-D----EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST 661 (1134)
Q Consensus 609 ~~~~l~~~~-~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~ 661 (1134)
+++.++-.+ . ...|+.-++..+..+..+...... ...+.|||++++++...
T Consensus 291 ~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 291 DNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEE
T ss_pred CCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEE
Confidence 887665443 3 335666677734445555543221 15899999999887544
No 319
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.45 E-value=5.4e-05 Score=85.97 Aligned_cols=187 Identities=9% Similarity=0.008 Sum_probs=121.2
Q ss_pred EEEcCCCCeEEEee--CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC----cEEEEEcccceEEEe
Q 001163 849 FALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDS----SIQIYNVRVDEVKTK 922 (1134)
Q Consensus 849 v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg----~i~iwd~~~~~~~~~ 922 (1134)
+=+++||+.+...+ .+.+.+.|.++.+...++.- .+....+++++ +++++++.+.+. ++..-+..+...+..
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 44567898775555 47799999999888877653 33557789999 788887775322 233333222111111
Q ss_pred ccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCcc-ccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE--eece
Q 001163 923 LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEK-QASKFLTIPNGRTASALADTRVQFHLDQTHLLAV--HETQ 999 (1134)
Q Consensus 923 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~ 999 (1134)
+.-. .+ -++.++|++...+ ++.|.+.|..+... .......++.+.. ...+.+||||++++++ .+.+
T Consensus 276 fni~--~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKs-----PHGV~vSPDGkylyVanklS~t 344 (635)
T PRK02888 276 FNIA--RI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKN-----PHGVNTSPDGKYFIANGKLSPT 344 (635)
T ss_pred EchH--HH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCC-----ccceEECCCCCEEEEeCCCCCc
Confidence 1100 00 1334578776653 67799999876100 0112233334333 4679999999999994 6799
Q ss_pred EEEEeCCCccc------------ceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCC
Q 001163 1000 IAIYEAPKLEC------------LKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAST 1051 (1134)
Q Consensus 1000 i~iwd~~~~~~------------~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~ 1051 (1134)
|.|+|+.+.+. ..+... .......+|.++|....|..-|..|..||+++
T Consensus 345 VSVIDv~k~k~~~~~~~~~~~~vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 345 VTVIDVRKLDDLFDGKIKPRDAVVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEEEChhhhhhhhccCCccceEEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 99999988653 333322 34556788999999888899999999999887
No 320
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.41 E-value=1.1e-06 Score=84.11 Aligned_cols=133 Identities=20% Similarity=0.249 Sum_probs=96.6
Q ss_pred HHHHHHHhhcccHHHHHHHHccc-CcccCCccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHH
Q 001163 38 MRYFEDMVTNGEWDEVEKYLSGF-TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEIT 116 (1134)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~ 116 (1134)
...++++|++|+++.|++.++.. +.+... ...+.|.|+.|+|+|+|..++..+|+.+.|+.+.|......+.++++.
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~--~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~ 82 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR--NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLM 82 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc--CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56799999999999999999887 222221 123889999999999999999999999999999776543457788888
Q ss_pred HHhccccccc--ccccccCCCChhHHHHHHHHHHhhcccCcCccccccCCCCc-hHHHHHHHHHHHHHH
Q 001163 117 QLLTLENFRD--NEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLK-NSRLRTLINQSLNWQ 182 (1134)
Q Consensus 117 ~ll~~~~~~~--~~~~~~~~~~~~~R~~l~~~l~~~i~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q 182 (1134)
.+|...+... ...+..+- ....|+++++.+.+.+-.... +| .+.|+.++.+...-+
T Consensus 83 ~lL~~~~~~~~~~s~~~~l~-~~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 83 SLLAYPDPEEPLPSPYKELL-SPERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHHcCCcccccchHHHHHh-ChHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 8887766554 22222121 236789999999886654222 33 457888888765543
No 321
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.40 E-value=0.00012 Score=83.19 Aligned_cols=348 Identities=11% Similarity=0.084 Sum_probs=188.3
Q ss_pred EEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEE
Q 001163 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 512 (1134)
Q Consensus 433 las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 512 (1134)
+.||+..|.|+|+-+.+++.++....|..-.. +.--++.+.+. ++..+.+|....|. + .|.-.+..
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~--~G~G~~~esk~--~l~~~~~~~~~~~g-D---------~HHp~~s~ 134 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSA--TGWGITNESKK--VLGEGARGGKYLNG-D---------THHPHMSF 134 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCC--cccCCchhHHH--HhhccccCCcccCC-C---------cCCCcccc
Confidence 45788999999999999988775544332111 11112222332 22222222222332 1 12111110
Q ss_pred EeccccCCccEEEEecC-CCcEEEEecCCCCceeeecCCCC-CeeEEEEC--cCCCEEEEEecCCCCCeEEEEEeCCCCe
Q 001163 513 ICPHHKENIQFIFSTAT-DGKIKAWLYDNLGSRVDYDAPGH-SSTMMAYS--ADGARLFSCGTNKEGESYLVEWNESEGA 588 (1134)
Q Consensus 513 ~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~s--~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 588 (1134)
- ...-||++++.-.. +.+|-..+++..++...+..+.. .+..+++- |+-.+++.++..
T Consensus 135 t--~g~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~---------------- 196 (635)
T PRK02888 135 T--DGTYDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEF---------------- 196 (635)
T ss_pred c--CCccceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCccc----------------
Confidence 0 12335677777664 55676777776665555444332 44455553 666666665421
Q ss_pred eEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEE
Q 001163 589 VKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK 667 (1134)
Q Consensus 589 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~ 667 (1134)
.+-+.|||+.+...+ ..+.+.+.|.++.+...++...+ ....++++|+|.++++.+.+.
T Consensus 197 --------------~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg---npd~v~~spdGk~afvTsyNs--- 256 (635)
T PRK02888 197 --------------RIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG---NLDNVDTDYDGKYAFSTCYNS--- 256 (635)
T ss_pred --------------ccccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC---CcccceECCCCCEEEEeccCc---
Confidence 122455665554333 55677888998888877776543 345789999999998876421
Q ss_pred EEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccc
Q 001163 668 ILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEA 747 (1134)
Q Consensus 668 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (1134)
+.+. .+..+.. ...
T Consensus 257 ----E~G~-tl~em~a-------------------------------------------------------------~e~ 270 (635)
T PRK02888 257 ----EEGV-TLAEMMA-------------------------------------------------------------AER 270 (635)
T ss_pred ----ccCc-ceeeecc-------------------------------------------------------------ccC
Confidence 1110 0000000 000
Q ss_pred ccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCC
Q 001163 748 VEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQP 827 (1134)
Q Consensus 748 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~ 827 (1134)
..+.+++... + -.+.++|++.... ++.+.+.|.....
T Consensus 271 -d~~vvfni~~--------------------i--ea~vkdGK~~~V~--gn~V~VID~~t~~------------------ 307 (635)
T PRK02888 271 -DWVVVFNIAR--------------------I--EEAVKAGKFKTIG--GSKVPVVDGRKAA------------------ 307 (635)
T ss_pred -ceEEEEchHH--------------------H--HHhhhCCCEEEEC--CCEEEEEECCccc------------------
Confidence 0111111110 0 0234466655542 4456665433100
Q ss_pred CCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee--CCeEEEEEccCCeE------------EEEecCCCCCeEEEEEc
Q 001163 828 PSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKT------------MTTFMPPPPAATFLAFH 893 (1134)
Q Consensus 828 ~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~~------------~~~~~~~~~~v~~l~~s 893 (1134)
..+..+...++ -......+.+||||+++++++ ++++.|.|+.+.+. ..+..- ...-...+|.
T Consensus 308 ~~~~~v~~yIP---VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFD 383 (635)
T PRK02888 308 NAGSALTRYVP---VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFD 383 (635)
T ss_pred cCCcceEEEEE---CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEEC
Confidence 00111111111 245667899999999999887 78999999987553 333332 2334567888
Q ss_pred CCCCcEEEEEeCCCcEEEEEccc----------ceEEEeccCccCceEE-----EEEeeCCCEEEEEe
Q 001163 894 PQDNNIIAIGMEDSSIQIYNVRV----------DEVKTKLKGHQKRITG-----LAFSNTLNVLVSSG 946 (1134)
Q Consensus 894 p~~~~~la~g~~dg~i~iwd~~~----------~~~~~~l~~h~~~V~~-----l~~s~d~~~l~s~s 946 (1134)
+ +|....+-.-|..|..|++.+ ...+.++.-|-.+..- =.-.+||++|++..
T Consensus 384 g-~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 384 G-RGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred C-CCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 8 778888888999999999986 3455555555443221 12357899998864
No 322
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.38 E-value=9.3e-07 Score=62.34 Aligned_cols=39 Identities=28% Similarity=0.543 Sum_probs=37.2
Q ss_pred ceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001163 917 DEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955 (1134)
Q Consensus 917 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd 955 (1134)
|+++.++.+|.+.|++++|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 323
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=9.5e-06 Score=85.21 Aligned_cols=254 Identities=14% Similarity=0.076 Sum_probs=171.9
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC-CCeEEEEEC
Q 001163 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-DRVIKVWDA 494 (1134)
Q Consensus 416 ~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-d~~i~iwd~ 494 (1134)
-|.+.|+.+..+ ..+++.+++.||.++.|.-..-.-+.-...+..|-+.|.+++.+.++. ++.|.+. |..++++|+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEe
Confidence 488888887655 567999999999999997654222222234677999999999999998 7888777 999999998
Q ss_pred CCCceeEEecC--CCcCEEEEeccccC-Cc--cEEEEecCCCcEEEEecCCCCceee--ecCCCCCeeEEEECcCCCEEE
Q 001163 495 VTGTKQYIFEG--HESPVYSICPHHKE-NI--QFIFSTATDGKIKAWLYDNLGSRVD--YDAPGHSSTMMAYSADGARLF 567 (1134)
Q Consensus 495 ~~~~~~~~~~~--h~~~v~~~~~~~~~-~~--~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~ 567 (1134)
.+-..+..++- -.+.+ +|...+ +- .+-++.-.++.+.++|-....+... ...|..+|..+.+.+-+..++
T Consensus 84 En~DminmiKL~~lPg~a---~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v 160 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFA---EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV 160 (558)
T ss_pred eccchhhhcccccCCCce---EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccccee
Confidence 87655533321 11222 221122 11 2223445678899998765553332 345677999999999999888
Q ss_pred EEecCCCCCeEEEEEeCCC------CeeEEEecCC--------CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcee
Q 001163 568 SCGTNKEGESYLVEWNESE------GAVKRTYHGL--------GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL 633 (1134)
Q Consensus 568 ~~~~~~~~~~~i~~wd~~~------~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 633 (1134)
+.- ..+.|..|.... .+....++.. ......++.|+|++..+.+-+.|..|++++..+|+.+
T Consensus 161 SiD----~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 161 SID----ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred ecc----ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 763 345689998772 1122112111 1225678999999999999999999999999998876
Q ss_pred EEEecCC-------------------------------CCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEe
Q 001163 634 ASIDADG-------------------------------GLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTV 681 (1134)
Q Consensus 634 ~~~~~~~-------------------------------~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 681 (1134)
+.+.... +...-..+.|...|++|+-++-= .|++.++.++ ...+.+
T Consensus 237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn-~v~ri~ 313 (558)
T KOG0882|consen 237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTN-TVVRIL 313 (558)
T ss_pred hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecC-eEEEEe
Confidence 5443100 01123467788888888887765 4788888887 555555
No 324
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.33 E-value=0.00032 Score=73.79 Aligned_cols=136 Identities=12% Similarity=0.090 Sum_probs=88.6
Q ss_pred CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEec------CCCCCeEEEEEeCCCCeeEEEecCCCC------
Q 001163 531 GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGT------NKEGESYLVEWNESEGAVKRTYHGLGK------ 598 (1134)
Q Consensus 531 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------~~~~~~~i~~wd~~~~~~~~~~~~~~~------ 598 (1134)
+++.++|.++++.+-.+. .+-.-.+..+||++.+++... -+...-.|.+||..+-.+...+.-..+
T Consensus 17 ~rv~viD~d~~k~lGmi~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEee--cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 357777766554333322 223445778999999887541 123345699999999877775433321
Q ss_pred CceEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC-CCcEEEEEECCCcEEEEEccCC
Q 001163 599 RSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 599 ~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
.......++.|+++++... -...|.|-|+..++.+..+...+ |.-.-| ..+-+.+-+.||.+....+...
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG------C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG------CWLIYPSGNRGFSMLCGDGSLLTVTLDAD 167 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS------EEEEEEEETTEEEEEETTSCEEEEEETST
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC------EEEEEecCCCceEEEecCCceEEEEECCC
Confidence 1123468889999888764 56789999999999998887643 233333 2246788899999999988744
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.31 E-value=0.00019 Score=85.32 Aligned_cols=282 Identities=11% Similarity=0.169 Sum_probs=160.9
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
.++.|.++.|.-++..+ +.+..+|.|.+-|.++..... ...-.+.|.+++||||++.++
T Consensus 67 gd~~i~s~~fl~d~~~i-~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~ 125 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSI-CVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLA 125 (1265)
T ss_pred CCcceEEEEEecccceE-EEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEE
Confidence 34689999999999865 577888999999888775433 234567999999999999999
Q ss_pred EEeCCCEEEEEEccCCceeeeeeeee---cCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce-eEEecCCCcCE
Q 001163 435 VAYSKHIVHLYTYHGGDELRNHLEIE---AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK-QYIFEGHESPV 510 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~~~~~~l~---~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v 510 (1134)
..+.++++.+-+- +-..+... .+. ...+....+-|-....+ +-|+. |...--+....+. +....-+.. =
T Consensus 126 liT~~~tll~mT~-~f~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs~-gr~~~~~~~~~ek~~~~~~~~~~-~ 198 (1265)
T KOG1920|consen 126 LITGRQTLLFMTK-DFEPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGSE-GRQAARQKIEKEKALEQIEQDDH-K 198 (1265)
T ss_pred EEeCCcEEEEEec-cccchhcc-ccccccccccccceeccccccee---eecch-hhhcccccccccccccchhhccC-C
Confidence 9999887766543 11111111 110 01112233444332221 11111 1111111100000 000011211 2
Q ss_pred EEEeccccCCccEEEEe-----cCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC
Q 001163 511 YSICPHHKENIQFIFST-----ATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 585 (1134)
Q Consensus 511 ~~~~~~~~~~~~~l~s~-----s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 585 (1134)
++|+| .+||+++++. ..-+.|++||-+ +.....-....+.-.+++|-|.|..+++.....+ +..|.++.-+
T Consensus 199 ~~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErN 274 (1265)
T KOG1920|consen 199 TSISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERN 274 (1265)
T ss_pred ceEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecC
Confidence 34566 5777888772 333789999876 2222222223334568999999999998875543 4457777643
Q ss_pred C---CeeEEEecCCCCCceEEEEEcCCCCEEEE---EeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCC-cEEE
Q 001163 586 E---GAVKRTYHGLGKRSVGVVQFDTTKNRFLA---AGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG-ILLA 658 (1134)
Q Consensus 586 ~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~-~~l~ 658 (1134)
. |.....+..... .+..++|+.++..|++ ......|++|-..+.......... .....-+.|+|.. ..+.
T Consensus 275 GL~hg~f~l~~p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~--~~~~~~~~W~p~~~~~L~ 351 (1265)
T KOG1920|consen 275 GLRHGEFVLPFPLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQ--FSQKALLMWDPVTEKTLH 351 (1265)
T ss_pred CccccccccCCccccc-chheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEe--ccccccccccCCCceeEE
Confidence 1 222222333332 4889999999998888 445566999998876543322211 1111238899843 3444
Q ss_pred EEECCCcEEEEEc
Q 001163 659 VSTNDNGIKILAN 671 (1134)
Q Consensus 659 ~~~~dg~i~iw~~ 671 (1134)
+-..+|...+++.
T Consensus 352 v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 352 VLRESGQRLVRDF 364 (1265)
T ss_pred EEecCCcEEEEEE
Confidence 4446777766664
No 326
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=1.1e-05 Score=91.13 Aligned_cols=189 Identities=17% Similarity=0.179 Sum_probs=133.3
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccc
Q 001163 885 PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQAS 964 (1134)
Q Consensus 885 ~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~ 964 (1134)
..++|++++ +++++.|+.+|.|++++.. +.. .+...|+.. ..+|.+++||+.||+|.|-.+.+.+..
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~-- 106 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI-- 106 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccc--
Confidence 457788886 4799999999999999976 333 444456554 568999999999999999998875522
Q ss_pred eeeeecCCCCCCCCCceEEEEcCC-----CCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEe
Q 001163 965 KFLTIPNGRTASALADTRVQFHLD-----QTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAF 1039 (1134)
Q Consensus 965 ~~~~~~~~~~~~~~~v~~l~fs~d-----g~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 1039 (1134)
....-+ .++.+++++|| .+.+++|....+.++.-+-...........-.++|.++.|. |.++|=++
T Consensus 107 ---~~~df~----rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan 177 (846)
T KOG2066|consen 107 ---TQYDFK----RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN 177 (846)
T ss_pred ---eeEecC----CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec
Confidence 112222 34889999998 45666654333888876544433333323347899999995 77888888
Q ss_pred cCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCC
Q 001163 1040 EEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus 1040 ~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~ 1102 (1134)
++| |+|||+.+++.+..+.++... .....++-.+.|.+ ...|+.|=.| +|+|..+.
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~---~R~e~fpphl~W~~--~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQS---VRPELFPPHLHWQD--EDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCC---CCcccCCCceEecC--CCeEEEecCC-eEEEEEEe
Confidence 777 999999999999888866522 22344555668877 4566655444 78888887
No 327
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.29 E-value=7.8e-05 Score=88.49 Aligned_cols=273 Identities=9% Similarity=0.072 Sum_probs=156.8
Q ss_pred cccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCC
Q 001163 776 AMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND 855 (1134)
Q Consensus 776 ~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg 855 (1134)
...|.++.|..++..++.+..+|.|.+-|.. +...... | .-...|.+++||||+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~e----------------------t~~~eiv---g-~vd~GI~aaswS~De 121 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPE----------------------TLELEIV---G-NVDNGISAASWSPDE 121 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccc----------------------ccceeee---e-eccCceEEEeecCCC
Confidence 3689999999999999999999988876433 2221111 1 136789999999999
Q ss_pred CeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce-----EEEe------cc
Q 001163 856 SYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE-----VKTK------LK 924 (1134)
Q Consensus 856 ~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~-----~~~~------l~ 924 (1134)
+.++.......-++...+..++..-.-+. .-.+ .++ .+.+++...=.-+.-..|+ .+.. ..
T Consensus 122 e~l~liT~~~tll~mT~~f~~i~E~~L~~------d~~~-~sk-~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~ 193 (1265)
T KOG1920|consen 122 ELLALITGRQTLLFMTKDFEPIAEKPLDA------DDER-KSK-FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIE 193 (1265)
T ss_pred cEEEEEeCCcEEEEEeccccchhcccccc------cccc-ccc-cceecccccceeeecchhhhcccccccccccccchh
Confidence 99999985443344444555444422110 0011 122 2222222211111111111 1100 01
Q ss_pred CccCceEEEEEeeCCCEEEEE-----eCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE----E
Q 001163 925 GHQKRITGLAFSNTLNVLVSS-----GADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA----V 995 (1134)
Q Consensus 925 ~h~~~V~~l~~s~d~~~l~s~-----s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~----~ 995 (1134)
.| +.=+.|.|--||.++|+. .....|++||-+ +.......-.. ..-.+++|-|.|..+++ +
T Consensus 194 ~~-~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~--------~l~~~LsWkPsgs~iA~iq~~~ 263 (1265)
T KOG1920|consen 194 QD-DHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVE--------GLQHSLSWKPSGSLIAAIQCKT 263 (1265)
T ss_pred hc-cCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCccc--------ccccceeecCCCCeEeeeeecC
Confidence 12 223568999999999883 223789999977 33222111111 23467999999999998 3
Q ss_pred eeceEEEEeCCCcccceeeccC--CCccCEEEEEEccCCCEEEE---EecCCcEEEeecCCCcceeecCCCcccCCCCCC
Q 001163 996 HETQIAIYEAPKLECLKQFVPR--EASGPITHATYSCDSQSIYV---AFEEGSVGVLTASTLRLRCRINPTAYLPTNPSL 1070 (1134)
Q Consensus 996 ~d~~i~iwd~~~~~~~~~~~~~--~h~~~v~~~~~s~dg~~l~s---~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~ 1070 (1134)
+|+.|.+|.-+. .....+..+ .....+..++|+.++..|++ ......|++|-+.+.......... +|..
T Consensus 264 sd~~IvffErNG-L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~--~~~~--- 337 (1265)
T KOG1920|consen 264 SDSDIVFFERNG-LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQ--FSQK--- 337 (1265)
T ss_pred CCCcEEEEecCC-ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEe--cccc---
Confidence 667899998763 222222211 12344899999999999987 444455999999887654332211 1100
Q ss_pred CceeEEEEecCCCCCEEEEEecCCcEEEEeCC
Q 001163 1071 RVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus 1071 ~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~ 1102 (1134)
.-+.|+|.....|..-..+|...+.++.
T Consensus 338 ----~~~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 338 ----ALLMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred ----ccccccCCCceeEEEEecCCcEEEEEEE
Confidence 0146666655555555566655555543
No 328
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.25 E-value=2.9e-06 Score=85.97 Aligned_cols=154 Identities=14% Similarity=0.131 Sum_probs=112.6
Q ss_pred EEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCc
Q 001163 901 AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALAD 980 (1134)
Q Consensus 901 a~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 980 (1134)
++.+.+..|-+-|+.+|.. ..|. -.+.|.++.|...++++..|+.+|.|...|+...........+..... +.|
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~----Ssv 301 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHD----SSV 301 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcC----cch
Confidence 4555677788999988742 3344 567799999998899999999999999999987533222222222211 357
Q ss_pred eEEEEcC-CCCEEEE-EeeceEEEEeCCCccc---ceeeccCCCccCE--EEEEEccCCCEEEEEecCCcEEEeecCCCc
Q 001163 981 TRVQFHL-DQTHLLA-VHETQIAIYEAPKLEC---LKQFVPREASGPI--THATYSCDSQSIYVAFEEGSVGVLTASTLR 1053 (1134)
Q Consensus 981 ~~l~fs~-dg~~l~~-~~d~~i~iwd~~~~~~---~~~~~~~~h~~~v--~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~ 1053 (1134)
+++..-. ++.+|++ +.+|+|.+||..--++ +.++. +|...- .-+.+.+....++++++|...|||.+.+|.
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe--GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE--GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee--cccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 7777655 6667776 6899999999987777 66666 664332 233455677788999999999999999999
Q ss_pred ceeecCCCc
Q 001163 1054 LRCRINPTA 1062 (1134)
Q Consensus 1054 ~~~~~~~~~ 1062 (1134)
+++.+..+.
T Consensus 380 Ll~tipf~~ 388 (425)
T KOG2695|consen 380 LLCTIPFPY 388 (425)
T ss_pred eeeccCCCC
Confidence 998887443
No 329
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.22 E-value=2.3e-05 Score=89.65 Aligned_cols=181 Identities=15% Similarity=0.184 Sum_probs=132.8
Q ss_pred CCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEE
Q 001163 854 NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITG 932 (1134)
Q Consensus 854 dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~ 932 (1134)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|..+.+.++++..|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 334555565 677888999988887776655556666665 6789999999999999999999999999999999987
Q ss_pred EEEeeCCCEEEEEeC---------CCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCC--CCEEEEEeeceEE
Q 001163 933 LAFSNTLNVLVSSGA---------DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD--QTHLLAVHETQIA 1001 (1134)
Q Consensus 933 l~~s~d~~~l~s~s~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d--g~~l~~~~d~~i~ 1001 (1134)
+.. .|+.|+|||. |.-|+|||+..-+... .++.+.+ ..-+.|.|. .++.+++..|...
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccC-------chhhhhcccccceEEEEeccccee
Confidence 555 6999999985 5568999998754322 2333332 244677775 3344447889999
Q ss_pred EEeCCCcc-c-ceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEee
Q 001163 1002 IYEAPKLE-C-LKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLT 1048 (1134)
Q Consensus 1002 iwd~~~~~-~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd 1048 (1134)
+-|..+.. . ........-...+..+++|++|..|+.|..+|.|-+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 99843221 1 11222112245599999999999999999999999998
No 330
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.21 E-value=0.003 Score=68.05 Aligned_cols=279 Identities=14% Similarity=0.127 Sum_probs=139.4
Q ss_pred EEcCCCCeEEEEEeCCC--cEEEEecCCccceeeeceeeeeccccCccccccccccCC-CCEEEEEEcCCCCEEEEEeCC
Q 001163 363 DFHPVQQILLVVGTNMG--DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT-ASVNRVMWSPDGTLFGVAYSK 439 (1134)
Q Consensus 363 ~fsp~g~~lla~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spd~~~las~s~d 439 (1134)
+|.+||++||..+..|| .+.+.|+.+++..+ |+... .......++|+++.++-....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~~ 101 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKNG 101 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEETT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEECC
Confidence 68999999999888776 56677888887654 22222 223356778988988877677
Q ss_pred CEEEEEEccCCceeeeeeeeecCCCCEEEEEEec--CCCceEEEEEe----------------------CCCeEEEEECC
Q 001163 440 HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY--PNKQLSVVTCG----------------------EDRVIKVWDAV 495 (1134)
Q Consensus 440 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~--~~~~~~l~s~s----------------------~d~~i~iwd~~ 495 (1134)
..|+-.|+.+.+... .+......+-...|.. |+. .++..- ..+.|.--|+.
T Consensus 102 ~~l~~vdL~T~e~~~---vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 102 RSLRRVDLDTLEERV---VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp TEEEEEETTT--EEE---EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred CeEEEEECCcCcEEE---EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 789999999976432 3444555565566653 344 333221 12235556777
Q ss_pred CCceeEEecCCCcCEEEEeccccCCccEEEEec---CCCc-EEEEecCCCCceee-ecCC--CCCeeEEEECcCCCEEEE
Q 001163 496 TGTKQYIFEGHESPVYSICPHHKENIQFIFSTA---TDGK-IKAWLYDNLGSRVD-YDAP--GHSSTMMAYSADGARLFS 568 (1134)
Q Consensus 496 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~dg~-i~vwd~~~~~~~~~-~~~~--~~~v~~~~~s~~~~~l~~ 568 (1134)
+|+....+. -...+..+.|+|..+ .+|+-|- .+.. -|||-+++.+.... +..+ ...+..=-|.|||..+..
T Consensus 177 tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 177 TGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp T--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred CCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 776544443 445566777777554 3444432 2221 36776654433222 2111 223444568999998876
Q ss_pred Eec-CCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCC----------------eEEEEEcCCCc
Q 001163 569 CGT-NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF----------------MIKFWDMDNVN 631 (1134)
Q Consensus 569 ~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----------------~i~iwd~~~~~ 631 (1134)
.+. .+..+..|.-+|+.+++........ ....+..++|++.++-=+.|. -|++++...+.
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~ 331 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGR 331 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTE
T ss_pred EeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCc
Confidence 544 3334667888999988654433321 334456678887776533331 56778887766
Q ss_pred eeEEEecC-------CC-CCCcceEEEcCCCcEEEEEE-CCCcEEEEEc
Q 001163 632 LLASIDAD-------GG-LQASPCIRFNKEGILLAVST-NDNGIKILAN 671 (1134)
Q Consensus 632 ~~~~~~~~-------~~-~~~v~~v~~sp~~~~l~~~~-~dg~i~iw~~ 671 (1134)
........ ++ ...-....|+|||++++-.| ..|...||-+
T Consensus 332 ~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 332 FRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred eeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 54322210 00 01124689999998776554 4677666644
No 331
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.21 E-value=5.6e-05 Score=86.59 Aligned_cols=182 Identities=8% Similarity=0.080 Sum_probs=126.9
Q ss_pred CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCc
Q 001163 429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES 508 (1134)
Q Consensus 429 d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 508 (1134)
++..++.|+-...+..+|+.+.+..+. ..-....|.-|.. +++ ++.+|...|+|.+-|..+.+.++++..|++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~---~~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRT---TNVSASGVTIMRY--NNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeee---eeccCCceEEEEe--cCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 456777787778889999998876552 2223334555543 466 799999999999999999999999999999
Q ss_pred CEEEEeccccCCccEEEEecC---------CCcEEEEecCCCCceeeecCCCCCeeEEEECcCC-CEEEEEecCCCCCeE
Q 001163 509 PVYSICPHHKENIQFIFSTAT---------DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG-ARLFSCGTNKEGESY 578 (1134)
Q Consensus 509 ~v~~~~~~~~~~~~~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~ 578 (1134)
.|..+.. .|++|++++. |..|+|||++..+....+..+.++ .-+.|.|.- ..+++++..+ .
T Consensus 219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sG----q 289 (1118)
T KOG1275|consen 219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSG----Q 289 (1118)
T ss_pred ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEeccc----c
Confidence 9998754 3478888874 566899999987766655544433 345566643 3455554433 3
Q ss_pred EEEEeCCC-Cee-EEEecCC-CCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001163 579 LVEWNESE-GAV-KRTYHGL-GKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 626 (1134)
Q Consensus 579 i~~wd~~~-~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 626 (1134)
..+-|..+ +.+ ...+..+ ....+..++++++++.++.|..+|.|.+|.
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 66666221 111 2222222 222488899999999999999999999997
No 332
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.16 E-value=0.037 Score=65.28 Aligned_cols=225 Identities=14% Similarity=0.135 Sum_probs=122.5
Q ss_pred CeEEEeeCCeEEEEEccCCe--EEEEecCCCCCeEEEEEcCCCCcEEEEEeC-----------C---CcEEEEEcccceE
Q 001163 856 SYVMSASGGKISLFNMMTFK--TMTTFMPPPPAATFLAFHPQDNNIIAIGME-----------D---SSIQIYNVRVDEV 919 (1134)
Q Consensus 856 ~~la~~sdg~i~lwd~~~~~--~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-----------d---g~i~iwd~~~~~~ 919 (1134)
..|+.+..+.+++.-++.-+ .++++. -......+++.+ ....+++.+. . ..++++|-.|-+.
T Consensus 685 d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v 762 (1096)
T KOG1897|consen 685 DSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV 762 (1096)
T ss_pred ceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence 35666666777776654322 222322 233455566655 3333333321 1 1467777666655
Q ss_pred EEeccC--cc--CceEEEEEeeC-CCEEEEEeC----------CCcEEEEECCCCccccceeeeecCCCCCCCCCceEEE
Q 001163 920 KTKLKG--HQ--KRITGLAFSNT-LNVLVSSGA----------DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQ 984 (1134)
Q Consensus 920 ~~~l~~--h~--~~V~~l~~s~d-~~~l~s~s~----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 984 (1134)
+...+- .. -.|.++.|..| +.+++.|.. .|.|.++.+..........-.... +.+.++.
T Consensus 763 l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~------Gav~aL~ 836 (1096)
T KOG1897|consen 763 LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVK------GAVYALV 836 (1096)
T ss_pred EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeec------cceeehh
Confidence 443221 11 23455568877 677777642 466777777662211100000111 1222222
Q ss_pred EcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeec--CCCcceeecCCCc
Q 001163 985 FHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTA--STLRLRCRINPTA 1062 (1134)
Q Consensus 985 fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~--~~~~~~~~~~~~~ 1062 (1134)
. -+| .++++-+..|++|++.+.+.++.-. .|...+..+...-.|..+++|.--++|.+-.. ..|...-....
T Consensus 837 ~-fng-kllA~In~~vrLye~t~~~eLr~e~--~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD-- 910 (1096)
T KOG1897|consen 837 E-FNG-KLLAGINQSVRLYEWTTERELRIEC--NISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARD-- 910 (1096)
T ss_pred h-hCC-eEEEecCcEEEEEEccccceehhhh--cccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehh--
Confidence 1 133 4556777899999999886555444 67889999999999999999988887766544 44434322221
Q ss_pred ccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCC
Q 001163 1063 YLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus 1063 ~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~ 1102 (1134)
+ |..-.+++.+- +...++-+..+|.+.+-..+
T Consensus 911 ~----~p~Wmtaveil----~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 911 Y----NPNWMTAVEIL----DDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred h----CccceeeEEEe----cCceEEeecccccEEEEEec
Confidence 1 11112333322 45566667777877776655
No 333
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.16 E-value=0.00033 Score=78.71 Aligned_cols=283 Identities=14% Similarity=0.095 Sum_probs=160.3
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
+...|.--+++..+++ ++.|+.-|.+++|+-.+++....+ ..+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhh
Confidence 4445555667777875 589999999999999888754421 234566778888999999999
Q ss_pred EEeCCCEEEEEEccCCceeeeee--ee-ecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC----ceeEEecCCC
Q 001163 435 VAYSKHIVHLYTYHGGDELRNHL--EI-EAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG----TKQYIFEGHE 507 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~~~~~--~l-~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~~h~ 507 (1134)
.|+..|.|.++-+..+....... .. ..|...|++++|++++. .+++|..-|.|..-.+.+. ...+.+....
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 99999999999887743322111 11 23788999999999999 6999999999998887762 1122333345
Q ss_pred cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC-C-CeeEEEECcC----CCEEEEEecCCCCCeEEEE
Q 001163 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG-H-SSTMMAYSAD----GARLFSCGTNKEGESYLVE 581 (1134)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~-~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~ 581 (1134)
+.|..+.+.. .+|+.++.-..+ +++.+.......-+... + .-...+|-|. .+-.+.++.-+ .++
T Consensus 171 s~IVQlD~~q----~~LLVStl~r~~-Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-----~Rl 240 (726)
T KOG3621|consen 171 SEIVQLDYLQ----SYLLVSTLTRCI-LCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-----LRL 240 (726)
T ss_pred cceEEeeccc----ceehHhhhhhhh-eeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-----Cce
Confidence 6676665422 233333332332 44444322111111111 1 1233445443 33444444433 677
Q ss_pred EeCC-CCeeEEEecCCC------C----------C-------ceEEEEE----cCCCCEEEEEeCCCeEEEEEcCCCcee
Q 001163 582 WNES-EGAVKRTYHGLG------K----------R-------SVGVVQF----DTTKNRFLAAGDEFMIKFWDMDNVNLL 633 (1134)
Q Consensus 582 wd~~-~~~~~~~~~~~~------~----------~-------~v~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~~ 633 (1134)
|... .|+.+++..-.. . . .-..+.| .-.+.++++-++-| |+|+|.++.+.+
T Consensus 241 Wead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~ 319 (726)
T KOG3621|consen 241 WEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVY 319 (726)
T ss_pred EEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEE
Confidence 8654 244433321100 0 0 0000111 01122444544444 888887765544
Q ss_pred EEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 634 ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 634 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
.-... ...|..+ +..|+-|++-..||.+++..+.+.
T Consensus 320 l~se~---~~DI~dV--s~~~neiFvL~~d~~l~~~sv~s~ 355 (726)
T KOG3621|consen 320 LWSEG---GHDILDV--SHCGNEIFVLNLDRGLKVESVASR 355 (726)
T ss_pred EeecC---CCceeEE--eecCceEEEEecCCceeEEEeehh
Confidence 43322 1233333 344666767777777777766554
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.00013 Score=83.35 Aligned_cols=205 Identities=15% Similarity=0.172 Sum_probs=127.3
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCc-eEEEEEeeCCCEEEEEeCCCc-----EEEEECCCCcccc-
Q 001163 891 AFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKR-ITGLAFSNTLNVLVSSGADSQ-----LCVWSTDGWEKQA- 963 (1134)
Q Consensus 891 ~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l~s~s~Dg~-----i~iwd~~~~~~~~- 963 (1134)
+|++ ++..+|.|+.+|.|.+++- .-+.+..++.+... |+.+-...+..+|++.+.|+. ++||+++.-+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 3556 7789999999998888773 34555788888777 555555555579999888765 8999998754333
Q ss_pred ceee---eecCCCC-CCCCCceEEEEcCCCCEEEEE-eeceEEEEeCC--CcccceeeccCCCccCEEEEEEccCCCEEE
Q 001163 964 SKFL---TIPNGRT-ASALADTRVQFHLDQTHLLAV-HETQIAIYEAP--KLECLKQFVPREASGPITHATYSCDSQSIY 1036 (1134)
Q Consensus 964 ~~~~---~~~~~~~-~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~--~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~ 1036 (1134)
..++ .+..... ....++.+++.|.+-+.+|+| .+|.|..+.=+ ..+-.+.-....-..+|+.+++-.|++.++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 2233 2221111 122678999999999999998 78999888532 111112222122378999999999999833
Q ss_pred EEecCCcEEEeecCCCcce-eecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCCCCc
Q 001163 1037 VAFEEGSVGVLTASTLRLR-CRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRW 1108 (1134)
Q Consensus 1037 s~s~Dg~i~vwd~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~~~~ 1108 (1134)
-+..-..|.+|.+....+. +.+. .|...+. |.+|++..++ +++++. ..|.+|+.+.-...|
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld-------~~G~~ln--Css~~~~t~q-fIca~~-e~l~fY~sd~~~~cf 249 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLD-------NNGISLN--CSSFSDGTYQ-FICAGS-EFLYFYDSDGRGPCF 249 (933)
T ss_pred EEEecceeEEEEecCCCcceeeec-------cCCccce--eeecCCCCcc-EEEecC-ceEEEEcCCCcceee
Confidence 3334467999999843311 1122 2333333 3355553332 444443 358888887544444
No 335
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.15 E-value=5.7e-05 Score=83.56 Aligned_cols=137 Identities=15% Similarity=0.101 Sum_probs=95.7
Q ss_pred ccCCCCCceeEEEeecCCCeeEEEEcCCCCeEEEEE----eCCCc----EEEEecCCccceeeeceeeeeccccCccccc
Q 001163 340 YSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVG----TNMGD----VMLWEVGSRERIAVKSFKVWELGACSMPLQA 411 (1134)
Q Consensus 340 ~~~d~~~~~~~~~~~h~~~V~~v~fsp~g~~lla~g----s~dg~----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (1134)
+...+..-+++..+.-.....++.||-...+.+.+- +.+|. -++|++..++..+. .+
T Consensus 189 ~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrv-sv-------------- 253 (545)
T PF11768_consen 189 LSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRV-SV-------------- 253 (545)
T ss_pred EEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEE-EE--------------
Confidence 333333445555566667778999998555544432 23443 45677765442221 11
Q ss_pred cccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEE
Q 001163 412 SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (1134)
Q Consensus 412 ~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i 491 (1134)
..-.....|.|++++|+.+.|+.|+.||+|++||...+... +..+.-..+.++|+|+|. ++++|+..|.+.+
T Consensus 254 -tsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~ 325 (545)
T PF11768_consen 254 -TSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQC 325 (545)
T ss_pred -EEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEE
Confidence 12346789999999999999999999999999999876432 223455688999999999 8999999999999
Q ss_pred EECCCCce
Q 001163 492 WDAVTGTK 499 (1134)
Q Consensus 492 wd~~~~~~ 499 (1134)
||+.-...
T Consensus 326 FD~ALspi 333 (545)
T PF11768_consen 326 FDMALSPI 333 (545)
T ss_pred EEeecCcc
Confidence 99765433
No 336
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.15 E-value=0.0015 Score=73.19 Aligned_cols=299 Identities=11% Similarity=0.065 Sum_probs=153.1
Q ss_pred CcCCCEEEEEecC-----CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeE
Q 001163 560 SADGARLFSCGTN-----KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA 634 (1134)
Q Consensus 560 s~~~~~l~~~~~~-----~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 634 (1134)
|||+++++..... .+....+.++|+.+++....... ...+....|+|+|+.++... ++.|++++..++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~- 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET- 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE-
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE-
Confidence 5788877764321 11234589999999876655444 23677899999999998886 478999998887443
Q ss_pred EEecCCC----------------CCCcceEEEcCCCcEEEEEEC-CCcEEEEEccC---Cce---eEEEeccCccccccc
Q 001163 635 SIDADGG----------------LQASPCIRFNKEGILLAVSTN-DNGIKILANAD---GIR---LLRTVESRTFDASRV 691 (1134)
Q Consensus 635 ~~~~~~~----------------~~~v~~v~~sp~~~~l~~~~~-dg~i~iw~~~~---~~~---~~~~~~~~~~~~~~~ 691 (1134)
.+...+. ...-..+.||||+++|+.... +..+..+.+.. ... ....+.-
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~Y-------- 148 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRY-------- 148 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE---------
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCccccccc--------
Confidence 3332220 123467899999999887644 44555444321 111 1111110
Q ss_pred chhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccccc--ccceeeecccCCccceeccc
Q 001163 692 ASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVE--KSRIWKLTEITEPSQCRSLR 769 (1134)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~iw~~~~~~~~~~~~~~~ 769 (1134)
-..|...- .+.++++.+.... .+.
T Consensus 149 --------------------------------------------------Pk~G~~np~v~l~v~~~~~~~~~----~~~ 174 (353)
T PF00930_consen 149 --------------------------------------------------PKAGDPNPRVSLFVVDLASGKTT----ELD 174 (353)
T ss_dssp ---------------------------------------------------BTTS---EEEEEEEESSSTCCC----EE-
T ss_pred --------------------------------------------------CCCCCcCCceEEEEEECCCCcEE----Eee
Confidence 00111111 3344455432221 111
Q ss_pred cCC--ccccccEEEEEEecCCceeeeecc--C-CeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCC-CCCC
Q 001163 770 LPD--NLTAMRVSRLIYTNSGLAILALAS--N-AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISD-TNPE 843 (1134)
Q Consensus 770 ~~~--~~~~~~i~~l~~spdg~~l~~~~~--d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~h~ 843 (1134)
.+. ......+..+.|.++++.++..-. + ..+.+..+ |..++......... .+--
T Consensus 175 ~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~--------------------d~~tg~~~~~~~e~~~~Wv 234 (353)
T PF00930_consen 175 PPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLC--------------------DASTGETRVVLEETSDGWV 234 (353)
T ss_dssp --HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEE--------------------EECTTTCEEEEEEESSSSS
T ss_pred eccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEE--------------------ECCCCceeEEEEecCCcce
Confidence 110 124677899999999984443332 2 23333221 22222211100000 0011
Q ss_pred CCeeEEEEc-CCCCeEEEee--CC--eEEEEEccCCeEEEEecCCCCCeEE-EEEcCCCCcEEEEEeCCC----cEEEEE
Q 001163 844 DAVPCFALS-KNDSYVMSAS--GG--KISLFNMMTFKTMTTFMPPPPAATF-LAFHPQDNNIIAIGMEDS----SIQIYN 913 (1134)
Q Consensus 844 ~~v~~v~~s-~dg~~la~~s--dg--~i~lwd~~~~~~~~~~~~~~~~v~~-l~~sp~~~~~la~g~~dg----~i~iwd 913 (1134)
..-....+. +++..++..+ +| .|.+++..++.. ..+....-.|+. +.++++++.+.+++..++ .|+.-+
T Consensus 235 ~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 235 DVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp SSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred eeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 112345554 6776655554 55 477778776663 455545556744 778884455555666533 555556
Q ss_pred cccceEEEeccCccCceEEEEEeeCCCEEEEE
Q 001163 914 VRVDEVKTKLKGHQKRITGLAFSNTLNVLVSS 945 (1134)
Q Consensus 914 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~ 945 (1134)
+.++..+..+....+.-..+.|||++++++-.
T Consensus 314 ~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 314 LDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp TTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred eCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 66233445555444333689999999988754
No 337
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.13 E-value=7.7e-06 Score=57.57 Aligned_cols=39 Identities=28% Similarity=0.507 Sum_probs=36.8
Q ss_pred CeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 001163 874 FKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYN 913 (1134)
Q Consensus 874 ~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd 913 (1134)
++++.++.+|...|++++|+| ++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467889999999999999999 899999999999999997
No 338
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.00044 Score=79.29 Aligned_cols=203 Identities=14% Similarity=0.150 Sum_probs=136.1
Q ss_pred EEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCC-eEEEEEcCCCCcEEEEEeCCC-----cEEEEEcccc----
Q 001163 849 FALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPA-ATFLAFHPQDNNIIAIGMEDS-----SIQIYNVRVD---- 917 (1134)
Q Consensus 849 v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~~la~g~~dg-----~i~iwd~~~~---- 917 (1134)
-++++.+..++.|+ +|.|.+.+- +.+.++.++.+... |+.+-... +..+|++.+.|+ .++||++..-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 35778888999998 899888874 44555777777766 55554443 446787777665 4899998642
Q ss_pred --eEE--EeccC-----ccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCC
Q 001163 918 --EVK--TKLKG-----HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD 988 (1134)
Q Consensus 918 --~~~--~~l~~-----h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d 988 (1134)
+++ ..+.. ...++.+++.|.+-+.+|.|-.||.|..+.=+--+....+..-...+. .+|+.++|..|
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d 182 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSD 182 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecC
Confidence 223 12222 346788999999999999999999999885332221222222223333 46999999999
Q ss_pred CCE-EEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecC
Q 001163 989 QTH-LLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRIN 1059 (1134)
Q Consensus 989 g~~-l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~ 1059 (1134)
++. +.++.-..|.+|.+.... ........|...+.|..|++-...+++++ +..+.+|+.+.......+.
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 987 555778889999998433 33333346778888888885544366555 4569999987544433333
No 339
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=0.00015 Score=75.58 Aligned_cols=244 Identities=12% Similarity=0.141 Sum_probs=137.0
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCC-CEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG-TLF 433 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~-~~l 433 (1134)
+...|..++|||..+-|+..++.+..|.|.|+++...... +..| ..+++++|.-|. .++
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDLDERHVI 251 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeeccCCccee
Confidence 7789999999999887888999999999999998876653 3334 799999999865 567
Q ss_pred EEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEe------cCCCceEEEEEeCCCeEEEEECCC--CceeEEec-
Q 001163 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS------YPNKQLSVVTCGEDRVIKVWDAVT--GTKQYIFE- 504 (1134)
Q Consensus 434 as~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s------~~~~~~~l~s~s~d~~i~iwd~~~--~~~~~~~~- 504 (1134)
..|-.+|.|.|||++..+.......-+--..+|..++.- +-|. +++..+.+ +..|++.- +.....+.
T Consensus 252 YaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt~--l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALTV--LQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred EEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeehh--hhhhhhhccccCCCccccc
Confidence 778889999999998655332211111123344444432 2344 34444432 45565432 11111111
Q ss_pred CCCcCEEEEeccccCCccEEEEecCCCc------EEEE-ecCCCCceeeec-CC-CC------CeeEEEECcCCCEEEEE
Q 001163 505 GHESPVYSICPHHKENIQFIFSTATDGK------IKAW-LYDNLGSRVDYD-AP-GH------SSTMMAYSADGARLFSC 569 (1134)
Q Consensus 505 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~------i~vw-d~~~~~~~~~~~-~~-~~------~v~~~~~s~~~~~l~~~ 569 (1134)
+..+...++.+++..+ ..|++.-.+.. |-.. |...+..+.... .. +. .-..+.-.++.++++..
T Consensus 328 e~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~ 406 (463)
T KOG1645|consen 328 EPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV 406 (463)
T ss_pred CCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEe
Confidence 1234444455444332 34444332110 1000 111111111000 00 00 11122334566666665
Q ss_pred ecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcC
Q 001163 570 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMD 628 (1134)
Q Consensus 570 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~ 628 (1134)
+. ....+.+||..+++.++++.... ++..++... +++-++..-.|..++||..+
T Consensus 407 gd---~tn~lil~D~~s~evvQ~l~~~e--pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 407 GD---STNELILQDPHSFEVVQTLALSE--PVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cC---CcceeEEeccchhheeeecccCc--ceeecceeecCCcchhhheecceEEEEecC
Confidence 43 35579999999999999988763 676665543 33333333445677887654
No 340
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.04 E-value=0.0048 Score=72.28 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=66.7
Q ss_pred cEEEEecCCCcEEEEecCCCCceeeecCCCC------Cee--EEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEe
Q 001163 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGH------SST--MMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY 593 (1134)
Q Consensus 522 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~------~v~--~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 593 (1134)
..++.++.++.|...|..+++....+..... .+. .+.+. ++..++.+.. ++.|+.+|.++|+.+..+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~----~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF----DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC----CCeEEEEECCCCCEeeee
Confidence 4567777788888888888777766544322 000 11111 2245555543 446999999999999887
Q ss_pred cCCCCC----ce-EEEEEcCCCCEEEEEe---------CCCeEEEEEcCCCceeEEEec
Q 001163 594 HGLGKR----SV-GVVQFDTTKNRFLAAG---------DEFMIKFWDMDNVNLLASIDA 638 (1134)
Q Consensus 594 ~~~~~~----~v-~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~ 638 (1134)
...... .+ ....+. +..++.++ .+|.++.+|..+|+.+-....
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 654320 01 111222 24455553 368899999999998877654
No 341
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=98.02 E-value=4.8e-06 Score=64.85 Aligned_cols=53 Identities=32% Similarity=0.565 Sum_probs=42.1
Q ss_pred cHHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHHHHHhcCCH
Q 001163 37 NMRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDR 90 (1134)
Q Consensus 37 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~ 90 (1134)
++..++++|+.|+|++|++.+...........+ .+.|.|++|+|+||++.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 367899999999999999999888332222222 38999999999999998764
No 342
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.96 E-value=0.0083 Score=69.29 Aligned_cols=251 Identities=14% Similarity=0.100 Sum_probs=137.9
Q ss_pred eeEEEEcCCCCeEEEEEeCCC----cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 359 VKSMDFHPVQQILLVVGTNMG----DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 359 V~~v~fsp~g~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
+....+||||++++.+-+..| .+++.|+.+|+.+.. .+ .. ..-..+.|.+|++.|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~~--~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------EN--PKFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------EE--EESEEEEECTTSSEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------cc--cccceEEEeCCCCEEE
Confidence 346789999998776655555 599999999976642 11 11 1122399999988877
Q ss_pred EEeCCC-----------EEEEEEccCCceeeeeeeeecCCCC--EEEEEEecCCCceEEEEEeC-C-CeEEEEECCCC--
Q 001163 435 VAYSKH-----------IVHLYTYHGGDELRNHLEIEAHVGS--VNDLAFSYPNKQLSVVTCGE-D-RVIKVWDAVTG-- 497 (1134)
Q Consensus 435 s~s~dg-----------~v~iwd~~~~~~~~~~~~l~~h~~~--V~~v~~s~~~~~~~l~s~s~-d-~~i~iwd~~~~-- 497 (1134)
....+. .|+.|++.++..-. ...+.+.... ...+..++|++.+++.+.+. + ..+.+.|+..+
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~ 264 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS 264 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence 664332 47888887764321 1234443333 57888999999633323322 2 35788888775
Q ss_pred --ceeEEecCCCcCEE-EEeccccCCccEEEEec---CCCcEEEEecCCCCc---eeeecCCCCCeeEEEECcCCCEEEE
Q 001163 498 --TKQYIFEGHESPVY-SICPHHKENIQFIFSTA---TDGKIKAWLYDNLGS---RVDYDAPGHSSTMMAYSADGARLFS 568 (1134)
Q Consensus 498 --~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~ 568 (1134)
.....+......+. .+.. . + +.+++... .++.|...++..... ...+..+...+.-..+...+.+|+.
T Consensus 265 ~~~~~~~l~~~~~~~~~~v~~-~-~-~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl 341 (414)
T PF02897_consen 265 PDAKPKLLSPREDGVEYYVDH-H-G-DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVL 341 (414)
T ss_dssp SS-SEEEEEESSSS-EEEEEE-E-T-TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEE
T ss_pred CcCCcEEEeCCCCceEEEEEc-c-C-CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEE
Confidence 22333333333333 3332 2 2 23443332 235666677776553 2233334433333334445666666
Q ss_pred EecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEE--Ee--CCCeEEEEEcCCCceeE
Q 001163 569 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLA--AG--DEFMIKFWDMDNVNLLA 634 (1134)
Q Consensus 569 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~--~dg~i~iwd~~~~~~~~ 634 (1134)
.... ++...|.++++..+...........+.+..+...++++.+.. .| .-++++.||+.+++...
T Consensus 342 ~~~~-~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 342 SYRE-NGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEE-TTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred EEEE-CCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 5443 457789999999555555555544445666665566554433 22 34678888998887543
No 343
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.0011 Score=74.74 Aligned_cols=158 Identities=11% Similarity=0.093 Sum_probs=92.8
Q ss_pred cccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCC
Q 001163 776 AMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND 855 (1134)
Q Consensus 776 ~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg 855 (1134)
.+.+....++++..++++|+..|.|.++.++.. ..+.... .. -....|...|++++|++|+
T Consensus 76 ~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~-~p~~~~~----------------~t--~~d~~~~~rVTal~Ws~~~ 136 (726)
T KOG3621|consen 76 TGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE-LPRDLDY----------------VT--PCDKSHKCRVTALEWSKNG 136 (726)
T ss_pred cceEEEEEecchhHhhhhhcCCceEEeehhhcc-CCCccee----------------ec--cccccCCceEEEEEecccc
Confidence 345667788999999999999999999977642 1111100 00 1111278899999999999
Q ss_pred CeEEEee-CCeEEEEEccCC----eEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce--EEEeccCccC
Q 001163 856 SYVMSAS-GGKISLFNMMTF----KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE--VKTKLKGHQK 928 (1134)
Q Consensus 856 ~~la~~s-dg~i~lwd~~~~----~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~--~~~~l~~h~~ 928 (1134)
..+.+|. .|+|.+-.+.+. -....+...++.|..+.+.. +.+|++.. -. -.+++...++ .+.+-. ..+
T Consensus 137 ~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl-~r-~~Lc~tE~eti~QIG~k~-R~~ 211 (726)
T KOG3621|consen 137 MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTL-TR-CILCQTEAETITQIGKKP-RKS 211 (726)
T ss_pred cEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhh-hh-hheeecchhHHHHhcCCC-cCC
Confidence 9999998 699888877662 12223334567788888774 44444333 22 2344444332 111111 111
Q ss_pred -ceEEEEEeeC----CCEEEEEeCCCcEEEEECCC
Q 001163 929 -RITGLAFSNT----LNVLVSSGADSQLCVWSTDG 958 (1134)
Q Consensus 929 -~V~~l~~s~d----~~~l~s~s~Dg~i~iwd~~~ 958 (1134)
.-...+|-|. .+-.+.|+.-| .|+|..+-
T Consensus 212 ~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~ 245 (726)
T KOG3621|consen 212 LIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADF 245 (726)
T ss_pred ccccceEEeeccccCCCceEEEecCC-CceEEeec
Confidence 1223445443 34455666666 78897653
No 344
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.93 E-value=0.051 Score=63.92 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=43.1
Q ss_pred CeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCc
Q 001163 864 GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGH 926 (1134)
Q Consensus 864 g~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h 926 (1134)
|.|.-+|+.+++.................. .+.+++.++.||.++.+|..+|+.+..++-.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 458888999998888765332222222222 3447778888999999999999999877654
No 345
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.92 E-value=0.00021 Score=79.26 Aligned_cols=83 Identities=18% Similarity=0.321 Sum_probs=68.2
Q ss_pred CceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEE
Q 001163 346 PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425 (1134)
Q Consensus 346 ~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 425 (1134)
..--+..+.....|.|++++|+.+. ++.|+.||.|.+||...+.... ..+.-.++.++
T Consensus 249 qrvsvtsipL~s~v~~ca~sp~E~k-LvlGC~DgSiiLyD~~~~~t~~---------------------~ka~~~P~~ia 306 (545)
T PF11768_consen 249 QRVSVTSIPLPSQVICCARSPSEDK-LVLGCEDGSIILYDTTRGVTLL---------------------AKAEFIPTLIA 306 (545)
T ss_pred eEEEEEEEecCCcceEEecCcccce-EEEEecCCeEEEEEcCCCeeee---------------------eeecccceEEE
Confidence 3344555668999999999999995 5799999999999998764332 23445788999
Q ss_pred EcCCCCEEEEEeCCCEEEEEEccCC
Q 001163 426 WSPDGTLFGVAYSKHIVHLYTYHGG 450 (1134)
Q Consensus 426 ~spd~~~las~s~dg~v~iwd~~~~ 450 (1134)
|+|+|..+++|+..|.+.+||+.-+
T Consensus 307 WHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 307 WHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999999999999999999998654
No 346
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=97.92 E-value=1.5e-05 Score=49.54 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHhc
Q 001163 6 RELVFLILQFLDEEKFKETVHKLEQDS 32 (1134)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~l~~Es 32 (1134)
+++.+||++||.++||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 579999999999999999999999997
No 347
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.92 E-value=0.0035 Score=73.38 Aligned_cols=240 Identities=10% Similarity=0.103 Sum_probs=140.7
Q ss_pred CeEEEee-CCeEEEEEccCCeEEEEecCCCCC-----e-EEEEEcCCCCcEEEEEe---------CCCcEEEEEcccceE
Q 001163 856 SYVMSAS-GGKISLFNMMTFKTMTTFMPPPPA-----A-TFLAFHPQDNNIIAIGM---------EDSSIQIYNVRVDEV 919 (1134)
Q Consensus 856 ~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~-----v-~~l~~sp~~~~~la~g~---------~dg~i~iwd~~~~~~ 919 (1134)
..++.++ ++.|+-+|.++|+.+..+...... + ....+. + .+++.++ .+|.+.-+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 4455555 899999999999999887644321 1 222333 2 3455554 367899999999998
Q ss_pred EEeccCccC--------------------ceE-EEEEeeCCCEEEEEeCCC------------------cEEEEECCCCc
Q 001163 920 KTKLKGHQK--------------------RIT-GLAFSNTLNVLVSSGADS------------------QLCVWSTDGWE 960 (1134)
Q Consensus 920 ~~~l~~h~~--------------------~V~-~l~~s~d~~~l~s~s~Dg------------------~i~iwd~~~~~ 960 (1134)
+..+..... .|. ..++.+.+..++.++.|+ .|.-+|.++++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 876643211 111 234445566777777665 68888988877
Q ss_pred cccceeeeecCCCCC----CCCCceEEEE-cCCCC---EEEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccC
Q 001163 961 KQASKFLTIPNGRTA----SALADTRVQF-HLDQT---HLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCD 1031 (1134)
Q Consensus 961 ~~~~~~~~~~~~~~~----~~~~v~~l~f-s~dg~---~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~d 1031 (1134)
.. +.. +.. .+.. ......-... .-+|. .+++ +.+|.+...|..+|+.+-..... ...++.+|
T Consensus 268 ~~-W~~-~~~-~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~- 338 (488)
T cd00216 268 VK-WFY-QTT-PHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP- 338 (488)
T ss_pred EE-EEe-eCC-CCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC-
Confidence 32 111 111 1100 0000000011 12343 3444 47899999999999987765421 11233343
Q ss_pred CCEEEEE------------------ecCCcEEEeecCCCcceeecCCCcccCCC-CCCCc--eeEEEEecCCCCCEEEEE
Q 001163 1032 SQSIYVA------------------FEEGSVGVLTASTLRLRCRINPTAYLPTN-PSLRV--YPLVIAGNPTDPNQFALG 1090 (1134)
Q Consensus 1032 g~~l~s~------------------s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~-h~~~v--~~~~~~~~p~~~~~l~s~ 1090 (1134)
..++.+ ..+|.+.-.|+.+|+.+.+.........- -.... .++.+ .++.|+++
T Consensus 339 -~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~-----~g~~v~~g 412 (488)
T cd00216 339 -GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT-----AGNLVFAG 412 (488)
T ss_pred -ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe-----cCCeEEEE
Confidence 333332 23678999999999988776643110000 00011 12222 35789999
Q ss_pred ecCCcEEEEeCCCCCCCccCCCC
Q 001163 1091 LTDGGVYIIEPLEAEGRWGTSPP 1113 (1134)
Q Consensus 1091 ~~Dg~v~vW~~~~~~~~~~~~~~ 1113 (1134)
+.||.|+.+|..+++..|...-+
T Consensus 413 ~~dG~l~ald~~tG~~lW~~~~~ 435 (488)
T cd00216 413 AADGYFRAFDATTGKELWKFRTP 435 (488)
T ss_pred CCCCeEEEEECCCCceeeEEECC
Confidence 99999999999999999997543
No 348
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.90 E-value=0.0032 Score=67.81 Aligned_cols=288 Identities=13% Similarity=0.069 Sum_probs=136.5
Q ss_pred EEEEecCCceeeeecc-CCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEE
Q 001163 781 RLIYTNSGLAILALAS-NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVM 859 (1134)
Q Consensus 781 ~l~~spdg~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la 859 (1134)
.=+|.+||+.|+.++. ||.-.+|-+ |+.+++..+..-. .........++++++.++
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~l--------------------DL~t~~i~QLTdg---~g~~~~g~~~s~~~~~~~ 96 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLL--------------------DLATGEITQLTDG---PGDNTFGGFLSPDDRALY 96 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEE--------------------ETTT-EEEE---S---S-B-TTT-EE-TTSSEEE
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEE--------------------EcccCEEEECccC---CCCCccceEEecCCCeEE
Confidence 3467889977766554 665555543 4555555442211 112222466778888876
Q ss_pred Eee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEc-CCCCcEEEEEeC----------------------CCcEEEEEcc
Q 001163 860 SAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFH-PQDNNIIAIGME----------------------DSSIQIYNVR 915 (1134)
Q Consensus 860 ~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~s-p~~~~~la~g~~----------------------dg~i~iwd~~ 915 (1134)
-.. +..|+-.|+.+.+....+..+..-+-...|. ..|+..++-.-. ...|...|+.
T Consensus 97 Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 97 YVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp EEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred EEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 554 6789999999988766666556555445553 225555443211 1245556777
Q ss_pred cceEEEeccCccCceEEEEEeeCCCEEEEEeCC----C-cEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCC
Q 001163 916 VDEVKTKLKGHQKRITGLAFSNTLNVLVSSGAD----S-QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQT 990 (1134)
Q Consensus 916 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D----g-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~ 990 (1134)
+|+....+. -..-+..+.|||....++.=+.. . .-+||-+.+.......+.+... ...+..=-|+|||.
T Consensus 177 tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-----~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 177 TGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-----GESVGHEFWVPDGS 250 (386)
T ss_dssp T--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-----TEEEEEEEE-TTSS
T ss_pred CCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-----CcccccccccCCCC
Confidence 776544443 34456788999876655554332 2 2367766543322222211111 14467778999999
Q ss_pred EEEE-E-----eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCC----------------cEEEee
Q 001163 991 HLLA-V-----HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEG----------------SVGVLT 1048 (1134)
Q Consensus 991 ~l~~-~-----~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg----------------~i~vwd 1048 (1134)
.|.- + .+..|.-+|..+++...... ...-.....++||++++-=+.|. .|++++
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~ 326 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFD 326 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEE----E-SEEEEEE-TTSSEEEEEE-------------------EEEEEE
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEe----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEec
Confidence 8776 3 24568888888886543222 22344566688999887433332 466788
Q ss_pred cCCCcce--eecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCC
Q 001163 1049 ASTLRLR--CRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus 1049 ~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~ 1102 (1134)
+..++.. ++... .+....|...+..-..+|+|++...|.+....|...||-+.
T Consensus 327 ~~~~~~~~l~~h~~-sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 327 VEAGRFRKLARHDT-SWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp TTTTEEEEEEE--------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred cccCceeeeeeccC-cceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 8776643 22221 12112233344556679999544445556667777776554
No 349
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.00065 Score=77.42 Aligned_cols=185 Identities=12% Similarity=0.153 Sum_probs=129.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC
Q 001163 418 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 497 (1134)
Q Consensus 418 ~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~ 497 (1134)
.+.++|++++ +++++-|+.+|.|++.+....- + +...|... ..+|. +++|||.||+|.|-.+-+.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~---~~~~~s~~------~~~Ge--y~asCS~DGkv~I~sl~~~ 103 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--K---TNFDHSSS------ILEGE--YVASCSDDGKVVIGSLFTD 103 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--c---cccccccc------ccCCc--eEEEecCCCcEEEeeccCC
Confidence 3467777775 6799999999999999987642 2 23335544 56788 8999999999999999888
Q ss_pred ceeEEecCCCcCEEEEecccc---CCccEEEEecCCCcEEEEecCCCCcee--eecCCCCCeeEEEECcCCCEEEEEecC
Q 001163 498 TKQYIFEGHESPVYSICPHHK---ENIQFIFSTATDGKIKAWLYDNLGSRV--DYDAPGHSSTMMAYSADGARLFSCGTN 572 (1134)
Q Consensus 498 ~~~~~~~~h~~~v~~~~~~~~---~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~ 572 (1134)
+...++. ...++.+++++|+ .....+++|+.-| +.++.-.-.+... .+....++|.++.| .|+++|-+...
T Consensus 104 ~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~ 179 (846)
T KOG2066|consen 104 DEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDD 179 (846)
T ss_pred ccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCC
Confidence 8877665 4568899998776 2236788999888 7776433222222 23444568999998 47788888755
Q ss_pred CCCCeEEEEEeCCCCeeEEEecCCCCC-----ceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 001163 573 KEGESYLVEWNESEGAVKRTYHGLGKR-----SVGVVQFDTTKNRFLAAGDEFMIKFWDMD 628 (1134)
Q Consensus 573 ~~~~~~i~~wd~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 628 (1134)
| |++||..+++.+..++..... ....+.|.++.+.++--+ .+|+|..++
T Consensus 180 G-----v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~--d~v~i~~I~ 233 (846)
T KOG2066|consen 180 G-----VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWG--DSVKICSIK 233 (846)
T ss_pred C-----cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecC--CeEEEEEEe
Confidence 4 999999999888776654431 123467877654444333 367777766
No 350
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.87 E-value=0.0031 Score=71.12 Aligned_cols=195 Identities=14% Similarity=0.168 Sum_probs=120.6
Q ss_pred eecCCCCEEEEEEecCCCceEEEEEeCCC--eEEEEECCCCceeEEe--cCCCcCEEEEeccccCCccEEEEecCCCcEE
Q 001163 459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYIF--EGHESPVYSICPHHKENIQFIFSTATDGKIK 534 (1134)
Q Consensus 459 l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~ 534 (1134)
+..-...+..-+|+|+++.+..++-...+ .+.++|+.+++....+ .++.. .-.|+|++. .++++...||...
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~-~l~f~~~rdg~~~ 263 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGS-KLAFSSSRDGSPD 263 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccCCCCCC-EEEEEECCCCCcc
Confidence 33344567778999999964444333333 5999999988765443 34332 235554442 4556667777755
Q ss_pred EE--ecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCE
Q 001163 535 AW--LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNR 612 (1134)
Q Consensus 535 vw--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 612 (1134)
+| |+..... ..+....+.-..-.|+|||+.++..+ |+.+...|.++|.+.+...+....... . ..-.++|||++
T Consensus 264 iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~~riT~~~~~-~-~~p~~SpdG~~ 339 (425)
T COG0823 264 IYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQVTRLTFSGGG-N-SNPVWSPDGDK 339 (425)
T ss_pred EEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCceeEeeccCCC-C-cCccCCCCCCE
Confidence 55 5554442 22333333334678999999999886 556777899999887765433222222 1 25679999999
Q ss_pred EEEEeC-CCe--EEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC
Q 001163 613 FLAAGD-EFM--IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 664 (1134)
Q Consensus 613 l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg 664 (1134)
++..+. +|. |.+.|+.++..++.+... .....-.|.++|..+...+..+
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~---~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASGGKIRILTST---YLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred EEEEeccCCceeeEEeccCCCCcEEEcccc---ccCCCCCcCCCCceEEEeccCC
Confidence 988773 344 677777766655544432 2334567888888777655443
No 351
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.78 E-value=3.4e-05 Score=52.24 Aligned_cols=32 Identities=34% Similarity=0.517 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHhhhcCHHHHHHHHHHhcCCC
Q 001163 4 LSRELVFLILQFLDEEKFKETVHKLEQDSGFF 35 (1134)
Q Consensus 4 ~~~e~~~li~q~L~~~g~~~s~~~l~~Esg~~ 35 (1134)
.++++.++|+|||..+||.+|+.+|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999975
No 352
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.77 E-value=0.0077 Score=67.27 Aligned_cols=253 Identities=15% Similarity=0.175 Sum_probs=131.2
Q ss_pred CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCcccee------e------------eceeeeeccccCcc------ccccc
Q 001163 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIA------V------------KSFKVWELGACSMP------LQASL 413 (1134)
Q Consensus 358 ~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~------~------------~~~~~~~~~~~~~~------~~~~~ 413 (1134)
.|+.+.|+++...| |+|...|.|.||.+...+.-. . ..-++-|+.....+ .+..+
T Consensus 3 ~v~~vs~a~~t~El-av~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLEL-AVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEE-EEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCceE-EEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 58899999987654 789999999999986553321 0 01223333321111 12224
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeec------CCCCEEEEEEec---CCC---ceEEE
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEA------HVGSVNDLAFSY---PNK---QLSVV 481 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~------h~~~V~~v~~s~---~~~---~~~l~ 481 (1134)
+....++|++++.| |=-++|.|..+|.+.|.|++....+... .+.. ....|+++.|+- ++. .+.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 55668999999997 6679999999999999999887765432 2333 344688898872 222 24788
Q ss_pred EEeCCCeEEEEECC-C--Ccee----EEecCCCcCEEEEeccccCCc-------------------cEEEEecCCCcEEE
Q 001163 482 TCGEDRVIKVWDAV-T--GTKQ----YIFEGHESPVYSICPHHKENI-------------------QFIFSTATDGKIKA 535 (1134)
Q Consensus 482 s~s~d~~i~iwd~~-~--~~~~----~~~~~h~~~v~~~~~~~~~~~-------------------~~l~s~s~dg~i~v 535 (1134)
.|...|.+.+|.+. . +... .....+.++|..|.......| +-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 99999999999875 1 2221 122246677766653211110 12333444688999
Q ss_pred EecCCCCceeeecCCCCCeeEEEEC-----cCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCC---CceEEEEEc
Q 001163 536 WLYDNLGSRVDYDAPGHSSTMMAYS-----ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK---RSVGVVQFD 607 (1134)
Q Consensus 536 wd~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---~~v~~~~~~ 607 (1134)
+...+.+...+..........+.+- ..+..|++... ++.++++.+..-+.+..+..... ..+...+++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9887766555444222233344442 24445555543 44599999998888877665321 122335566
Q ss_pred CCCCEEEEEe
Q 001163 608 TTKNRFLAAG 617 (1134)
Q Consensus 608 ~~~~~l~~~~ 617 (1134)
++|..++-.+
T Consensus 316 ~~Gdi~~~~g 325 (395)
T PF08596_consen 316 RNGDIFYWTG 325 (395)
T ss_dssp TTS-EEEE-S
T ss_pred CCCCEEEEeC
Confidence 6665554443
No 353
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.76 E-value=0.0092 Score=66.63 Aligned_cols=241 Identities=13% Similarity=0.090 Sum_probs=135.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceee----------------------------------------eeeee
Q 001163 420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELR----------------------------------------NHLEI 459 (1134)
Q Consensus 420 ~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~----------------------------------------~~~~l 459 (1134)
.|+++.|+++..-||+|...|.|.||.....+... +..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 68999999999999999999999999765332110 11113
Q ss_pred ecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe--cC------CCcCEEEEecc---ccCCc---cEEE
Q 001163 460 EAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF--EG------HESPVYSICPH---HKENI---QFIF 525 (1134)
Q Consensus 460 ~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~~------h~~~v~~~~~~---~~~~~---~~l~ 525 (1134)
....++|++++.|.-| +++.|..+|.+.|.|++....++.- .. ....|+++.|. ...|+ -.++
T Consensus 83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 3456899999998666 7999999999999999887777652 22 23457777664 23333 5788
Q ss_pred EecCCCcEEEEecCC-CCceee------ecCCCCCeeEEE-ECcC-C--------------------CEEEEEecCCCCC
Q 001163 526 STATDGKIKAWLYDN-LGSRVD------YDAPGHSSTMMA-YSAD-G--------------------ARLFSCGTNKEGE 576 (1134)
Q Consensus 526 s~s~dg~i~vwd~~~-~~~~~~------~~~~~~~v~~~~-~s~~-~--------------------~~l~~~~~~~~~~ 576 (1134)
+|...|.+.+|.+.. ....+. ...+..++..+. ++.+ | .++++++ +
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-----e 234 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-----E 234 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE------S
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-----c
Confidence 899999999998752 211111 112333444333 2211 1 1344444 2
Q ss_pred eEEEEEeCCCCeeEEEecCCCCCceEEEEEc-----CCCCEEEEEeCCCeEEEEEcCCCceeEEEecCC--CCCCcceEE
Q 001163 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFD-----TTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG--GLQASPCIR 649 (1134)
Q Consensus 577 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~v~ 649 (1134)
..++++...+.+...+..... .....+++- ..+..|++-..+|.|+++.+..-+.+..+.... ....+....
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~-~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDP-FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS--EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred cceEEEeCCCCcccceeeccc-cccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 249999988887666554221 123334442 345677888899999999999999888877532 112345677
Q ss_pred EcCCCcEEEEEECCCcEEEEE
Q 001163 650 FNKEGILLAVSTNDNGIKILA 670 (1134)
Q Consensus 650 ~sp~~~~l~~~~~dg~i~iw~ 670 (1134)
++++|..++-.+.. .+.++.
T Consensus 314 is~~Gdi~~~~gps-E~~l~s 333 (395)
T PF08596_consen 314 ISRNGDIFYWTGPS-EIQLFS 333 (395)
T ss_dssp E-TTS-EEEE-SSS-EEEEEE
T ss_pred ECCCCCEEEEeCcc-cEEEEE
Confidence 78888876655443 444443
No 354
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.76 E-value=0.0027 Score=71.77 Aligned_cols=219 Identities=17% Similarity=0.162 Sum_probs=117.8
Q ss_pred CCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEec
Q 001163 844 DAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL 923 (1134)
Q Consensus 844 ~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l 923 (1134)
.....+.++|+|++++++++|...|+.....+.... +.....+|.+ .++ +|+-...+.|.|+.--+.+....+
T Consensus 33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT---
T ss_pred cCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceEE
Confidence 346789999999999999999999998655444332 3456788987 555 666666889999743333332233
Q ss_pred cCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEE
Q 001163 924 KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIY 1003 (1134)
Q Consensus 924 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iw 1003 (1134)
+.. ..+..+-. |.+|...+.+ .|.+||+.+++ .+....- ..|..+.|+++|.+++...+.++.|+
T Consensus 106 ~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~-----~i~~i~v-----~~vk~V~Ws~~g~~val~t~~~i~il 170 (443)
T PF04053_consen 106 KLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGK-----LIRRIDV-----SAVKYVIWSDDGELVALVTKDSIYIL 170 (443)
T ss_dssp --S-S-EEEEE----SSSEEEEETT-EEEEE-TTT-------EEEEESS------E-EEEEE-TTSSEEEEE-S-SEEEE
T ss_pred cCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcc-----eeeEEec-----CCCcEEEEECCCCEEEEEeCCeEEEE
Confidence 321 12333332 8888877655 79999999865 2222221 23789999999999999888899998
Q ss_pred eCCCc-----------ccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcc--eeecCCCcccCCCCCC
Q 001163 1004 EAPKL-----------ECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRL--RCRINPTAYLPTNPSL 1070 (1134)
Q Consensus 1004 d~~~~-----------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~h~~ 1070 (1134)
+.+.. +.+..+. .-...|.+.+|..| -+++|... .++. +-+|+. ++.+. .
T Consensus 171 ~~~~~~~~~~~~~g~e~~f~~~~--E~~~~IkSg~W~~d-~fiYtT~~--~lkY--l~~Ge~~~i~~ld----------~ 233 (443)
T PF04053_consen 171 KYNLEAVAAIPEEGVEDAFELIH--EISERIKSGCWVED-CFIYTTSN--HLKY--LVNGETGIIAHLD----------K 233 (443)
T ss_dssp EE-HHHHHHBTTTB-GGGEEEEE--EE-S--SEEEEETT-EEEEE-TT--EEEE--EETTEEEEEEE-S----------S
T ss_pred EecchhcccccccCchhceEEEE--EecceeEEEEEEcC-EEEEEcCC--eEEE--EEcCCcceEEEcC----------C
Confidence 86543 0122221 11457888888766 44444432 5665 333332 32332 2
Q ss_pred CceeEEEEecCCCCCEEEEEecCCcEEEEeCCCC
Q 001163 1071 RVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEA 1104 (1134)
Q Consensus 1071 ~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~ 1104 (1134)
.++-+ .+.| ..+.+.....|+.|..+.++-.
T Consensus 234 ~~yll--gy~~-~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 234 PLYLL--GYLP-KENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp --EEE--EEET-TTTEEEEE-TT--EEEEE--HH
T ss_pred ceEEE--EEEc-cCCEEEEEECCCCEEEEEECHH
Confidence 34444 3445 3578888889999998887643
No 355
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.75 E-value=0.014 Score=66.19 Aligned_cols=202 Identities=14% Similarity=0.151 Sum_probs=111.7
Q ss_pred EEEEcCCCCeEEEeeCC------------eEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcc
Q 001163 848 CFALSKNDSYVMSASGG------------KISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVR 915 (1134)
Q Consensus 848 ~v~~s~dg~~la~~sdg------------~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~ 915 (1134)
.++.+|.|..+|...|. .|+||+. .|+.+.++.-..+.+.++.|+. +. .|++-..||.+++||+.
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCC
Confidence 34555666666655433 5999987 5666776554448999999997 44 55567789999999986
Q ss_pred cceE-------EEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCC--CCCCceE-EEE
Q 001163 916 VDEV-------KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTA--SALADTR-VQF 985 (1134)
Q Consensus 916 ~~~~-------~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~-l~f 985 (1134)
|+. +....-....+....+..+|-.+. ..++.+.+-+--............+..... ....... ..+
T Consensus 110 -G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l 186 (410)
T PF04841_consen 110 -GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL 186 (410)
T ss_pred -CceeechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEe
Confidence 333 111122223333334444563333 334444433221111000000011111000 0001111 345
Q ss_pred cCCCCEEEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCC
Q 001163 986 HLDQTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPT 1061 (1134)
Q Consensus 986 s~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~ 1061 (1134)
+.+....+. ..++.+.+.+....+. + ...+++..|++||+|++||.-..+|.+.|.+.+-.+.++.+...
T Consensus 187 ~~~~~~~i~~~~g~~i~~i~~~~~~~---i---~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~ 257 (410)
T PF04841_consen 187 SSDRVVEILLANGETIYIIDENSFKQ---I---DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD 257 (410)
T ss_pred ecCcceEEEEecCCEEEEEEcccccc---c---cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC
Confidence 555554444 4556666554433221 1 12468999999999999999999999999987777766666533
No 356
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.68 E-value=0.02 Score=57.64 Aligned_cols=254 Identities=12% Similarity=0.133 Sum_probs=139.7
Q ss_pred EEEEEcCCCCE-EEEEeCCCe-EEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECC-----CcEEEEEccCC
Q 001163 602 GVVQFDTTKNR-FLAAGDEFM-IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND-----NGIKILANADG 674 (1134)
Q Consensus 602 ~~~~~~~~~~~-l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d-----g~i~iw~~~~~ 674 (1134)
..++|+|.... ++.+-.-|+ ..++|....+...++.........-.-.|||||.+|+..-+| |.|-|||...+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 45778876644 344444444 578999988887777654332233346799999999876544 67778877654
Q ss_pred ceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccccccccee
Q 001163 675 IRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIW 754 (1134)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw 754 (1134)
...+-.+..
T Consensus 151 fqrvgE~~t----------------------------------------------------------------------- 159 (366)
T COG3490 151 FQRVGEFST----------------------------------------------------------------------- 159 (366)
T ss_pred cceeccccc-----------------------------------------------------------------------
Confidence 333222221
Q ss_pred eecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEee-ecCCCCCCcccccccCCCCcccCCCCCccc
Q 001163 755 KLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLW-KWPRNERNSTGKATTNQAPQLWQPPSGILM 833 (1134)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 833 (1134)
|.-....+.+.+||+.++.+.. -|..- ++...+.+.+.... .+-+.|..+|.++
T Consensus 160 --------------------~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsMeP---Slvlld~atG~li 214 (366)
T COG3490 160 --------------------HGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSMEP---SLVLLDAATGNLI 214 (366)
T ss_pred --------------------CCcCcceeEEecCCcEEEEeCC--ceecccccCccccchhhcCc---cEEEEeccccchh
Confidence 2223345678889988877653 34433 22222222211110 1223354555544
Q ss_pred cc-CCCCCCCCCCeeEEEEcCCCCeEEEee-CCe-----EEEEEccCCeEEEEecCC-------CCCeEEEEEcCCCCcE
Q 001163 834 TN-DISDTNPEDAVPCFALSKNDSYVMSAS-GGK-----ISLFNMMTFKTMTTFMPP-------PPAATFLAFHPQDNNI 899 (1134)
Q Consensus 834 ~~-~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~-----i~lwd~~~~~~~~~~~~~-------~~~v~~l~~sp~~~~~ 899 (1134)
.. .++..-+.-.|+.++..+||+.++.+. .|. --+=-...++.+.-+... ...|-+++...+++-.
T Consensus 215 ekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV 294 (366)
T COG3490 215 EKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLV 294 (366)
T ss_pred hhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeE
Confidence 32 222112456788999999998877664 221 111112234444443322 2347788888744444
Q ss_pred EEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001163 900 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955 (1134)
Q Consensus 900 la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd 955 (1134)
.++.-..+...+||..+|.++..-.-- ....++- ...-++..+.+|.+.+++
T Consensus 295 ~lTSP~GN~~vi~da~tG~vv~~a~l~--daaGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 295 ALTSPRGNRAVIWDAATGAVVSEAALP--DAAGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEecCCCCeEEEEEcCCCcEEeccccc--cccccee--ccCceEEecCCceEEecc
Confidence 444445567889999999877543211 1222332 333355556678888774
No 357
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.67 E-value=1.8e-05 Score=87.11 Aligned_cols=205 Identities=14% Similarity=0.213 Sum_probs=130.4
Q ss_pred cCCCeeEEEEcCCCC-eEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC-CCCE
Q 001163 355 QGSAVKSMDFHPVQQ-ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTL 432 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~-~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~ 432 (1134)
....+.|++++.+.+ -++++|..+|.|.+-.+....--. ..+..+|....++++|++ |.+.
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs-----------------~E~tp~~ar~Ct~lAwneLDtn~ 117 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS-----------------AEVTPGYARPCTSLAWNELDTNH 117 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCccccc-----------------ceecccccccccccccccccHHH
Confidence 445677888776544 688999999999998876543210 113467889999999999 7788
Q ss_pred EEEEe----CCCEEEEEEccCCce-eeeeeeeec-CCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce-eEEecC
Q 001163 433 FGVAY----SKHIVHLYTYHGGDE-LRNHLEIEA-HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK-QYIFEG 505 (1134)
Q Consensus 433 las~s----~dg~v~iwd~~~~~~-~~~~~~l~~-h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~ 505 (1134)
||.|- .|..+.|||+.++-. .+....+.+ -.....+++|..+.+ ++.+|...+.+.++|++.... ...+
T Consensus 118 LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv-- 193 (783)
T KOG1008|consen 118 LAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV-- 193 (783)
T ss_pred HHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--
Confidence 88873 366799999988621 111111222 344567899997777 788999889999999873321 2222
Q ss_pred CCcCEEEEeccccCCccEEEEecCCCcEEEEe-cCCCCceeeecCCC-----CCeeEEEECcCCC-EEEEEecCCCCCeE
Q 001163 506 HESPVYSICPHHKENIQFIFSTATDGKIKAWL-YDNLGSRVDYDAPG-----HSSTMMAYSADGA-RLFSCGTNKEGESY 578 (1134)
Q Consensus 506 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd-~~~~~~~~~~~~~~-----~~v~~~~~s~~~~-~l~~~~~~~~~~~~ 578 (1134)
.+..+..+.+.|- .++++++-. ||.|-+|| ....+.......+. ..+..++|+|... .+++...+ ..+
T Consensus 194 nTk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd---S~t 268 (783)
T KOG1008|consen 194 NTKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD---SIT 268 (783)
T ss_pred hhhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC---cce
Confidence 1223444454441 225666555 99999999 33333222211111 2588999999654 44444432 456
Q ss_pred EEEEeCC
Q 001163 579 LVEWNES 585 (1134)
Q Consensus 579 i~~wd~~ 585 (1134)
|+++|+.
T Consensus 269 Irlydi~ 275 (783)
T KOG1008|consen 269 IRLYDIC 275 (783)
T ss_pred EEEeccc
Confidence 8888875
No 358
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.64 E-value=0.089 Score=61.90 Aligned_cols=150 Identities=8% Similarity=0.034 Sum_probs=89.2
Q ss_pred cEEEEEcccceEEEeccCccCceEE---------EEEeeCCC---EEEEEeCCCcEEEEECCCCccccce------ee--
Q 001163 908 SIQIYNVRVDEVKTKLKGHQKRITG---------LAFSNTLN---VLVSSGADSQLCVWSTDGWEKQASK------FL-- 967 (1134)
Q Consensus 908 ~i~iwd~~~~~~~~~l~~h~~~V~~---------l~~s~d~~---~l~s~s~Dg~i~iwd~~~~~~~~~~------~~-- 967 (1134)
+|.-.|++||+..-.++.....+.+ +.+..+|+ .++.+..+|.+.+.|-.+++..... ..
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 5777889999988777652222221 22224665 7889999999999999998753100 00
Q ss_pred eec--CCC-----------------------CCCCCCceEEEEcCCCCEEEE-Eee------------------------
Q 001163 968 TIP--NGR-----------------------TASALADTRVQFHLDQTHLLA-VHE------------------------ 997 (1134)
Q Consensus 968 ~~~--~~~-----------------------~~~~~~v~~l~fs~dg~~l~~-~~d------------------------ 997 (1134)
++. .+. ......-..++++|+..++++ ..+
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 000 000 000000123567776666655 211
Q ss_pred ---------ceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCC
Q 001163 998 ---------TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINP 1060 (1134)
Q Consensus 998 ---------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~ 1060 (1134)
+.|.-+|+.+++..-...... ....+. +.-.|.+++.++.||.++.+|..||+.+.+...
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~--p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDF--PLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCCC--CCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 357778888887766554211 111121 223566777888899999999999999987764
No 359
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.63 E-value=0.022 Score=58.81 Aligned_cols=191 Identities=7% Similarity=0.105 Sum_probs=110.6
Q ss_pred CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001163 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (1134)
Q Consensus 356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las 435 (1134)
...++.++|+|+...|+|+....+.|...+.+ |+.+.... +.+ .+..-.|++..++.++++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl~ 81 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVLS 81 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEEE
Confidence 45699999999988899999999999999974 66665422 233 357788999888888887
Q ss_pred EeCCCEEEEEEccCCce---eee--eeeee---cCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC---CceeEE--
Q 001163 436 AYSKHIVHLYTYHGGDE---LRN--HLEIE---AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT---GTKQYI-- 502 (1134)
Q Consensus 436 ~s~dg~v~iwd~~~~~~---~~~--~~~l~---~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~---~~~~~~-- 502 (1134)
--.++.+.+.++..... ... ...+. .+...+-.++|.+.++. |+.+-...-..++.+.. +..+..
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeecc
Confidence 77799999999843221 111 11111 34566999999999885 44445555555655443 222211
Q ss_pred ------ecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC---------CCeeEEEECcCCCEEE
Q 001163 503 ------FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG---------HSSTMMAYSADGARLF 567 (1134)
Q Consensus 503 ------~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~ 567 (1134)
.......+.++++++. .+++++.......|..+|. .++....+.... .+--.++|.++|+..+
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp -HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred ccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 1123445788888865 4478888888888988884 344433333222 2567899999997666
Q ss_pred EE
Q 001163 568 SC 569 (1134)
Q Consensus 568 ~~ 569 (1134)
+.
T Consensus 238 vs 239 (248)
T PF06977_consen 238 VS 239 (248)
T ss_dssp EE
T ss_pred Ec
Confidence 64
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.012 Score=66.37 Aligned_cols=204 Identities=14% Similarity=0.173 Sum_probs=144.0
Q ss_pred eeEEEEcCCCCeEEEee--CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeC---CCcEEEEEcccceEE
Q 001163 846 VPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGME---DSSIQIYNVRVDEVK 920 (1134)
Q Consensus 846 v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~---dg~i~iwd~~~~~~~ 920 (1134)
-..+++++++..+.... ++.|.+.|..+.+....... ......++++| +++.+.++.. ++++.+.|..+++.+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-ccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 45778888888665554 68899999877776666542 22677899999 5655554444 689999999998888
Q ss_pred EeccCccCceEEEEEeeCCCEEEEEe-CCCcEEEEECCCCccccceee--eecCCCCCCCCCceEEEEcCCCCEEEEEee
Q 001163 921 TKLKGHQKRITGLAFSNTLNVLVSSG-ADSQLCVWSTDGWEKQASKFL--TIPNGRTASALADTRVQFHLDQTHLLAVHE 997 (1134)
Q Consensus 921 ~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d 997 (1134)
.....-..+ ..++++|+|..++.+. .++.|.+.|.++..... ... ....+ .....+.+++||.++.+..+
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~-----~~P~~i~v~~~g~~~yV~~~ 226 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVG-----TGPAGIAVDPDGNRVYVAND 226 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccC-----CCCceEEECCCCCEEEEEec
Confidence 775544344 8899999999666554 78899999977744221 000 01111 23567999999998877422
Q ss_pred ----ceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecC-CcEEEeecCCCcceeecC
Q 001163 998 ----TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEE-GSVGVLTASTLRLRCRIN 1059 (1134)
Q Consensus 998 ----~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D-g~i~vwd~~~~~~~~~~~ 1059 (1134)
+.+...|..++.....-...+-. ....+.++|+|+++.+.... +.+.+-|..+........
T Consensus 227 ~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 227 GSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred cCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 58899999888877663322222 56678999999998887544 889999998887766544
No 361
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.52 E-value=0.013 Score=69.21 Aligned_cols=214 Identities=10% Similarity=0.026 Sum_probs=113.6
Q ss_pred CCCeEEEEEcCCCCcEEEEEe------CCC--cEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCc-EEEE
Q 001163 884 PPAATFLAFHPQDNNIIAIGM------EDS--SIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQ-LCVW 954 (1134)
Q Consensus 884 ~~~v~~l~~sp~~~~~la~g~------~dg--~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~-i~iw 954 (1134)
...+...+++| +|+.+|... .|. .|.+++. .+.......+. ..+.-.|+|||+.|++...... +++.
T Consensus 349 ~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 349 MGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred ccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEe
Confidence 34678999999 777666554 244 4555554 23222222332 3788899999988887753312 2222
Q ss_pred ECCCCccccceeeeecCCCC--CCCCCceEEEEcCCCCEEEEEeeceEEE---EeCCCccccee-----eccCCCccCEE
Q 001163 955 STDGWEKQASKFLTIPNGRT--ASALADTRVQFHLDQTHLLAVHETQIAI---YEAPKLECLKQ-----FVPREASGPIT 1024 (1134)
Q Consensus 955 d~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~fs~dg~~l~~~~d~~i~i---wd~~~~~~~~~-----~~~~~h~~~v~ 1024 (1134)
+-.... ....+.+..+.. .....|..+.|||||+.++...+++|++ -....|+ ... +. .+-...+.
T Consensus 425 ~~~~~g--ql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~-~~l~~~~~ 500 (591)
T PRK13616 425 RDPATG--QLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVG-PGLGDTAV 500 (591)
T ss_pred ccCCCc--eEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEee-cccCCccc
Confidence 211100 000011111000 0124699999999999999966788887 4544554 111 11 12133468
Q ss_pred EEEEccCCCEEEEEecCCcEEEeecCC-CcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163 1025 HATYSCDSQSIYVAFEEGSVGVLTAST-LRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus 1025 ~~~~s~dg~~l~s~s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
++.|..++.++ ++..++...+|.+.- |.....+. .. +....+.++ +-++ ..++.+..+|.+.+=.-..
T Consensus 501 ~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~-~~----n~~~~v~~v--aa~~---~~iyv~~~~g~~~l~~~~~ 569 (591)
T PRK13616 501 SLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALP-SR----NLSAPVVAV--AASP---STVYVTDARAVLQLPNSDS 569 (591)
T ss_pred cceEecCCEEE-EEecCCCCceEEEecCCccccccC-CC----CccCceEEE--ecCC---ceEEEEcCCceEEecCCCC
Confidence 89999999965 455555444555322 22111111 10 123444444 4333 3566677777444332333
Q ss_pred CCCCccCCCCCCC
Q 001163 1104 AEGRWGTSPPNEN 1116 (1134)
Q Consensus 1104 ~~~~~~~~~~~~~ 1116 (1134)
.+.-|...|+..+
T Consensus 570 ~~~~W~ev~~l~g 582 (591)
T PRK13616 570 GDQYWREVPGLMG 582 (591)
T ss_pred CCCCceECccccC
Confidence 4456988887765
No 362
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.51 E-value=0.027 Score=58.22 Aligned_cols=201 Identities=10% Similarity=0.073 Sum_probs=112.2
Q ss_pred CCCCeeEEEEcCCCCeEEEee--CCeEEEEEccCCeEEEEecCC-CCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce
Q 001163 842 PEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPP-PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE 918 (1134)
Q Consensus 842 h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~ 918 (1134)
-...+..++|+|+...|++.. .+.|..++. +|+.++.+.-. .+..-.+++.. ++.++++--.++.+.++++....
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEeccc
Confidence 455699999999876555554 477888886 57888876533 36688899987 77777766668999999984321
Q ss_pred ------EEEec-----cCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCC--C-cccccee-eeecCCCCCCCCCceEE
Q 001163 919 ------VKTKL-----KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDG--W-EKQASKF-LTIPNGRTASALADTRV 983 (1134)
Q Consensus 919 ------~~~~l-----~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~--~-~~~~~~~-~~~~~~~~~~~~~v~~l 983 (1134)
....+ ..+...+-.++|.+.++.|+.+-+..-..++.+.. . ....... ..... .......+..+
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~S~l 176 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD-DKLFVRDLSGL 176 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH--HT--SS---EE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc-ccceeccccce
Confidence 11111 13556688999999988888888877777887764 1 1110000 00110 00011347889
Q ss_pred EEcCCCCEEEE-E-eeceEEEEeCCCcccceeeccCC--C-----ccCEEEEEEccCCCEEEEEecCCcEEEe
Q 001163 984 QFHLDQTHLLA-V-HETQIAIYEAPKLECLKQFVPRE--A-----SGPITHATYSCDSQSIYVAFEEGSVGVL 1047 (1134)
Q Consensus 984 ~fs~dg~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~--h-----~~~v~~~~~s~dg~~l~s~s~Dg~i~vw 1047 (1134)
++.|....|.+ + .+..|.++| .+|+.+..+.... | -...-.|+|.++|++.+ .++-+..++|
T Consensus 177 ~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 177 SYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp EEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 99997655555 5 557888888 5577666554322 1 13577899999996555 4566655554
No 363
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.49 E-value=0.014 Score=66.06 Aligned_cols=219 Identities=11% Similarity=0.071 Sum_probs=115.2
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEEC
Q 001163 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA 494 (1134)
Q Consensus 415 ~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~ 494 (1134)
.........+.++|+|+++++ +.||.-.|+....... . ..+.-...+|.+.++ +++-...++|.|+.-
T Consensus 29 g~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~---k-----~~G~g~~~vw~~~n~---yAv~~~~~~I~I~kn 96 (443)
T PF04053_consen 29 GSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN---K-----AFGSGLSFVWSSRNR---YAVLESSSTIKIYKN 96 (443)
T ss_dssp EE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEE---E-----EEEE-SEEEE-TSSE---EEEE-TTS-EEEEET
T ss_pred CCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc---c-----ccCceeEEEEecCcc---EEEEECCCeEEEEEc
Confidence 345556789999999999999 4667777777433221 1 123345688998665 677777889999743
Q ss_pred CCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCC
Q 001163 495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKE 574 (1134)
Q Consensus 495 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 574 (1134)
-+.+....+.. ...+..|-. |.+|...+. +.|.+||+.+......+... .|..+.|+++|++++..+.+
T Consensus 97 ~~~~~~k~i~~-~~~~~~If~-----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-- 165 (443)
T PF04053_consen 97 FKNEVVKSIKL-PFSVEKIFG-----GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-- 165 (443)
T ss_dssp TEE-TT------SS-EEEEE------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S---
T ss_pred CccccceEEcC-CcccceEEc-----CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC--
Confidence 33333233332 123444421 455665554 48999999988777776643 48899999999999998743
Q ss_pred CCeEEEEEeCCCC--------------eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc--eeEEEec
Q 001163 575 GESYLVEWNESEG--------------AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN--LLASIDA 638 (1134)
Q Consensus 575 ~~~~i~~wd~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~ 638 (1134)
.+.+++.... ..+..+ . ..|.+.+|..+ .++-.... .|+. +-.|+ .+..+
T Consensus 166 ---~i~il~~~~~~~~~~~~~g~e~~f~~~~E~---~-~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~l-- 231 (443)
T PF04053_consen 166 ---SIYILKYNLEAVAAIPEEGVEDAFELIHEI---S-ERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHL-- 231 (443)
T ss_dssp ---SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-----S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE---
T ss_pred ---eEEEEEecchhcccccccCchhceEEEEEe---c-ceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEc--
Confidence 2666553322 222222 1 26778888765 44444433 6665 33333 22332
Q ss_pred CCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163 639 DGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (1134)
Q Consensus 639 ~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 673 (1134)
..++.-+.+.++.+.+.....|+.+..+.+..
T Consensus 232 ---d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 232 ---DKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp ---SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred ---CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 23556677777777888888888888887643
No 364
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00096 Score=70.32 Aligned_cols=112 Identities=11% Similarity=0.162 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHhcCCCcc----------HHHHHHHhhcccHHHHHHHHccc-CcccCCccchhHHH
Q 001163 6 RELVFLILQFLDEEKFKETVHKLEQDSGFFFN----------MRYFEDMVTNGEWDEVEKYLSGF-TKVDDNRYSMKIFF 74 (1134)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~l~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~ 74 (1134)
+.+..+|..++..+|..+.+..|-+|+|...+ +.++-+++.+|+-.-|++.+..- ..+... ...+.|
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~--~s~LE~ 194 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK--SSSLEF 194 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc--cccHHH
Confidence 34588999999999999999999999998753 68899999999999999999775 233322 223889
Q ss_pred HHHHHHHHHHHhcCCHH--HHHHHHHhhcccccccCHHHHHHHHHHh
Q 001163 75 EIRKQKYLEALDKRDRA--KAVEILVKDLKVFSAFNEDLFKEITQLL 119 (1134)
Q Consensus 75 ~i~~~~~lEll~~~~~~--~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1134)
.+..+.|++++..|... +|+.+.|+.++|+......+++.|-.+|
T Consensus 195 ~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl 241 (394)
T KOG2817|consen 195 KLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSL 241 (394)
T ss_pred HHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence 99999999999999887 9999999999999654444555544433
No 365
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.46 E-value=0.0081 Score=67.82 Aligned_cols=194 Identities=13% Similarity=0.131 Sum_probs=113.6
Q ss_pred EEEee-cCCCeeEEEEcCCCCeEEEEEeCC---CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEE
Q 001163 350 VMTLN-QGSAVKSMDFHPVQQILLVVGTNM---GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425 (1134)
Q Consensus 350 ~~~~~-h~~~V~~v~fsp~g~~lla~gs~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 425 (1134)
.+.+. ....+..-+|+|+++.+....-.. ..+.++|+.+++..... .-.+.-..-+
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~--------------------~~~g~~~~P~ 244 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL--------------------NFNGNNGAPA 244 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee--------------------ccCCccCCcc
Confidence 33444 566788889999999875553333 35999999988754421 1233445678
Q ss_pred EcCCCCEEEEEe-CCCE--EEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCC--eEEEEECCCCcee
Q 001163 426 WSPDGTLFGVAY-SKHI--VHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQ 500 (1134)
Q Consensus 426 ~spd~~~las~s-~dg~--v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~~~~~~~ 500 (1134)
|||||++||.+. .||. |.+.|+.++...+ +..-.+.-+.=.|+|||+. ++++.+..| .|.+.|.+.+..
T Consensus 245 fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~~~- 318 (425)
T COG0823 245 FSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGSQV- 318 (425)
T ss_pred CCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCCce-
Confidence 999999888764 4564 6666877766322 3333333346789999996 344455555 455556555543
Q ss_pred EEecCCCcCEEEEeccccCCccEEEEecC-CCc--EEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecC
Q 001163 501 YIFEGHESPVYSICPHHKENIQFIFSTAT-DGK--IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572 (1134)
Q Consensus 501 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 572 (1134)
..+....+.-..-.| ++||.+++..+. +|. |.+.|+.+......+ ..........+.++++.++..+..
T Consensus 319 ~riT~~~~~~~~p~~--SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 319 TRLTFSGGGNSNPVW--SPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred eEeeccCCCCcCccC--CCCCCEEEEEeccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEeccC
Confidence 322222111112233 566677776664 344 555555544432222 223344456788899888876543
No 366
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.44 E-value=0.1 Score=60.17 Aligned_cols=246 Identities=14% Similarity=0.125 Sum_probs=127.3
Q ss_pred CCEEEEEEcCCCCEEEEE-eCCC----EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC--------
Q 001163 419 ASVNRVMWSPDGTLFGVA-YSKH----IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-------- 485 (1134)
Q Consensus 419 ~~V~~l~~spd~~~las~-s~dg----~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-------- 485 (1134)
..+...++||||++||.+ +..| .++++|+.+|+.+... +.... ...+.|.+|++. ++.+...
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~--i~~~~--~~~~~W~~d~~~-~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG--IENPK--FSSVSWSDDGKG-FFYTRFDEDQRTSDS 198 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE--EEEEE--SEEEEECTTSSE-EEEEECSTTTSS-CC
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc--ccccc--cceEEEeCCCCE-EEEEEeCcccccccC
Confidence 345578999999999976 3333 5999999999765432 22211 223999999885 3333322
Q ss_pred --CCeEEEEECCCCce--eEEecCCCcC--EEEEeccccCCccEEEEec-CC---CcEEEEecCCC----CceeeecCCC
Q 001163 486 --DRVIKVWDAVTGTK--QYIFEGHESP--VYSICPHHKENIQFIFSTA-TD---GKIKAWLYDNL----GSRVDYDAPG 551 (1134)
Q Consensus 486 --d~~i~iwd~~~~~~--~~~~~~h~~~--v~~~~~~~~~~~~~l~s~s-~d---g~i~vwd~~~~----~~~~~~~~~~ 551 (1134)
...|+.|.+.++.. ...+...... ...+.. +.++++++..+ .. ..+.+.++... .....+....
T Consensus 199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~--s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSR--SKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE---TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEe--cCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 23478888877643 2444443333 344544 45557765432 22 34666677653 1222222222
Q ss_pred CCe-eEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCee---EEEecCCCC-CceEEEEEcCCCCEEEEEe-CCC--eEE
Q 001163 552 HSS-TMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV---KRTYHGLGK-RSVGVVQFDTTKNRFLAAG-DEF--MIK 623 (1134)
Q Consensus 552 ~~v-~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~dg--~i~ 623 (1134)
..+ ..+... +..+...+..+.....|...++..... ...+..+.. ..+..+. ..+++|+... .++ .|+
T Consensus 277 ~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 277 DGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp SS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTEEEEEEEETTEEEEE
T ss_pred CceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCEEEEEEEECCccEEE
Confidence 233 223332 444444444445566788888887652 323333333 1344443 3455555544 444 588
Q ss_pred EEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEE--EEC--CCcEEEEEccCCce
Q 001163 624 FWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAV--STN--DNGIKILANADGIR 676 (1134)
Q Consensus 624 iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~--~~~--dg~i~iw~~~~~~~ 676 (1134)
++++..+.....+.... .+.|..+...+++..+.. .+- -+++.-||+.++..
T Consensus 353 v~~~~~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 353 VYDLDDGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEETT-TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEECCCCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 99998455555555432 233455555555543332 222 35778888887743
No 367
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.31 Score=55.11 Aligned_cols=261 Identities=14% Similarity=0.115 Sum_probs=164.8
Q ss_pred EEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC
Q 001163 350 VMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD 429 (1134)
Q Consensus 350 ~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 429 (1134)
...+.-......+...|+|..+.++-.....+.+-+......... ...-...-..++++++
T Consensus 24 ~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~-------------------~~~g~~~p~~i~v~~~ 84 (381)
T COG3391 24 TAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQS-------------------LSVGGVYPAGVAVNPA 84 (381)
T ss_pred EEEeecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeee-------------------ccCCCccccceeeCCC
Confidence 334443446778899999966655544433444444431111100 0001134557899998
Q ss_pred CCEEEE-EeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEe-CCCeEEEEECCCCceeEEecCCC
Q 001163 430 GTLFGV-AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVTGTKQYIFEGHE 507 (1134)
Q Consensus 430 ~~~las-~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~h~ 507 (1134)
++.+.. ...+..|.+.|..+....... ..+. ....++++++++.++++-.. .++++.+.|..+++.+.+...-.
T Consensus 85 ~~~vyv~~~~~~~v~vid~~~~~~~~~~--~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~ 160 (381)
T COG3391 85 GNKVYVTTGDSNTVSVIDTATNTVLGSI--PVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN 160 (381)
T ss_pred CCeEEEecCCCCeEEEEcCcccceeeEe--eecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC
Confidence 885554 445688999997776654422 1222 56789999999864333333 37899999999998888755433
Q ss_pred cCEEEEeccccCCccEEE-EecCCCcEEEEecCCCCcee-e---ecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEE
Q 001163 508 SPVYSICPHHKENIQFIF-STATDGKIKAWLYDNLGSRV-D---YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW 582 (1134)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 582 (1134)
.+ ..+++.+ +|..++ +-..++.|.+.|........ . .......-..+.++|+|..+...... +.+..+...
T Consensus 161 ~P-~~~a~~p--~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~-~~~~~v~~i 236 (381)
T COG3391 161 TP-TGVAVDP--DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG-SGSNNVLKI 236 (381)
T ss_pred Cc-ceEEECC--CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc-CCCceEEEE
Confidence 44 6677654 446444 44578999999966543332 0 11122244578899999977766432 223578899
Q ss_pred eCCCCeeEEE-ecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEec
Q 001163 583 NESEGAVKRT-YHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDA 638 (1134)
Q Consensus 583 d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 638 (1134)
|..++..... +..... ....+.+.|+++.+.+.. ..+.+.+-|..+.........
T Consensus 237 d~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 237 DTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred eCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 9988877665 333332 445688999999998885 458899999988877776643
No 368
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.42 E-value=0.066 Score=54.06 Aligned_cols=233 Identities=12% Similarity=0.053 Sum_probs=136.0
Q ss_pred eEEEEcCCCCe-EEEee-CCe-EEEEEccCCeEEEEecCCCCC--eEEEEEcCCCCcEEEEEeCC-----CcEEEEEccc
Q 001163 847 PCFALSKNDSY-VMSAS-GGK-ISLFNMMTFKTMTTFMPPPPA--ATFLAFHPQDNNIIAIGMED-----SSIQIYNVRV 916 (1134)
Q Consensus 847 ~~v~~s~dg~~-la~~s-dg~-i~lwd~~~~~~~~~~~~~~~~--v~~l~~sp~~~~~la~g~~d-----g~i~iwd~~~ 916 (1134)
..++|+|.... ++.+- -|+ ..++|..+.+.+.++....+. ---=.||| ||.+|...-+| |.|-|||...
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEeccc
Confidence 45777776543 34444 355 778999888777766533332 12246899 89888766444 6899999885
Q ss_pred c-eEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEE--------------------EECCCCccccceeeeecCCCCC
Q 001163 917 D-EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCV--------------------WSTDGWEKQASKFLTIPNGRTA 975 (1134)
Q Consensus 917 ~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~i--------------------wd~~~~~~~~~~~~~~~~~~~~ 975 (1134)
+ +.+..+..|.-.-..+.+.+||+.|+.+. |-|.. .|-.+++......+.....+
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~-- 225 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ-- 225 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh--
Confidence 4 55677888877778899999999998763 33333 33333332222222211111
Q ss_pred CCCCceEEEEcCCCCEEEEE-eec-----eEEEEeCCCcccceeecc-----CCCccCEEEEEEccCCCEEEEEe-cCCc
Q 001163 976 SALADTRVQFHLDQTHLLAV-HET-----QIAIYEAPKLECLKQFVP-----REASGPITHATYSCDSQSIYVAF-EEGS 1043 (1134)
Q Consensus 976 ~~~~v~~l~fs~dg~~l~~~-~d~-----~i~iwd~~~~~~~~~~~~-----~~h~~~v~~~~~s~dg~~l~s~s-~Dg~ 1043 (1134)
..++.++..+||...+.. ..| --.+=....++.+.-+.. .....-|-+++..-+..+++..+ .-+.
T Consensus 226 --lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~ 303 (366)
T COG3490 226 --LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNR 303 (366)
T ss_pred --cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCe
Confidence 357888888998877663 111 111111112222211110 01134567788876666655444 4567
Q ss_pred EEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEe
Q 001163 1044 VGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIE 1100 (1134)
Q Consensus 1044 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~ 1100 (1134)
..+||..+|..+....... ...++. ...-+++.+.+|.+.++.
T Consensus 304 ~vi~da~tG~vv~~a~l~d---------aaGva~-----~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 304 AVIWDAATGAVVSEAALPD---------AAGVAA-----AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEEEEcCCCcEEecccccc---------ccccee-----ccCceEEecCCceEEecc
Confidence 8899999999875544221 112221 244577778888888873
No 369
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.38 E-value=0.0079 Score=70.96 Aligned_cols=189 Identities=10% Similarity=0.065 Sum_probs=107.6
Q ss_pred CCeeEEEEcCCCCeEEEee-------CC--eEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCC--------
Q 001163 844 DAVPCFALSKNDSYVMSAS-------GG--KISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED-------- 906 (1134)
Q Consensus 844 ~~v~~v~~s~dg~~la~~s-------dg--~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~d-------- 906 (1134)
..+...++||||+.++... |. .|.+++.. +.. ..+.. ....+.-.|+| +|+.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 4577899999999887654 32 46666652 333 33321 22488899999 76666665422
Q ss_pred ----CcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEE---EECCCCccccceeeeecCCCCCCCCC
Q 001163 907 ----SSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCV---WSTDGWEKQASKFLTIPNGRTASALA 979 (1134)
Q Consensus 907 ----g~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~ 979 (1134)
+.+.+.++..++... ...+.|..+.|||||.+++... ++.|.+ -....|+........+..+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 234334544443322 3356799999999999988766 477777 343444321111122221111 23
Q ss_pred ceEEEEcCCCCEEEEEeeceEEEEeCCC-cccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEE
Q 001163 980 DTRVQFHLDQTHLLAVHETQIAIYEAPK-LECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVG 1045 (1134)
Q Consensus 980 v~~l~fs~dg~~l~~~~d~~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~ 1045 (1134)
+..+.|..++.+++...++...+|.+.- |.....+........+.+++-+++ .++....++.+.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 5789999999966544444444554432 222222232223567778887763 455566666443
No 370
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.30 E-value=0.12 Score=55.80 Aligned_cols=230 Identities=12% Similarity=0.080 Sum_probs=125.9
Q ss_pred CCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEc
Q 001163 368 QQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTY 447 (1134)
Q Consensus 368 g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~ 447 (1134)
++ .++.|+.+| +.+++......... ..+...|..+...|+-+.|++-+ |+.+.++++
T Consensus 7 ~~-~L~vGt~~G-l~~~~~~~~~~~~~--------------------i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L 63 (275)
T PF00780_consen 7 GD-RLLVGTEDG-LYVYDLSDPSKPTR--------------------ILKLSSITQLSVLPELNLLLVLS-DGQLYVYDL 63 (275)
T ss_pred CC-EEEEEECCC-EEEEEecCCcccee--------------------EeecceEEEEEEecccCEEEEEc-CCccEEEEc
Confidence 44 457888888 99999832221110 11233499999999888777775 499999998
Q ss_pred cCCceeeeeee-----------eecCCCCEEEEE--EecCCCceEEEEEeCCCeEEEEECCCC-----ceeEEecCCCcC
Q 001163 448 HGGDELRNHLE-----------IEAHVGSVNDLA--FSYPNKQLSVVTCGEDRVIKVWDAVTG-----TKQYIFEGHESP 509 (1134)
Q Consensus 448 ~~~~~~~~~~~-----------l~~h~~~V~~v~--~s~~~~~~~l~s~s~d~~i~iwd~~~~-----~~~~~~~~h~~~ 509 (1134)
..-........ .......+...+ =...+.. .|+ ....+.|.+|.+... +..+++. -...
T Consensus 64 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~-va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~ 140 (275)
T PF00780_consen 64 DSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLC-VAVKKKILIYEWNDPRNSFSKLLKEIS-LPDP 140 (275)
T ss_pred hhhccccccccccccccccccccccccCCeeEEeeccccccce-EEE-EEECCEEEEEEEECCcccccceeEEEE-cCCC
Confidence 76443221100 011222344444 1123332 344 344458888776653 3455555 3467
Q ss_pred EEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC------------CCeeEEEECcCCCEEEEEecCCCCCe
Q 001163 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG------------HSSTMMAYSADGARLFSCGTNKEGES 577 (1134)
Q Consensus 510 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~------------~~v~~~~~s~~~~~l~~~~~~~~~~~ 577 (1134)
+.+++|. + +.++.|.. +...+.|+.+......+.... .++..+.. +++.+|++...
T Consensus 141 ~~~i~~~--~--~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~~------ 208 (275)
T PF00780_consen 141 PSSIAFL--G--NKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCYDN------ 208 (275)
T ss_pred cEEEEEe--C--CEEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEecc------
Confidence 7888886 2 45666664 446778888655544332211 12323333 34555554321
Q ss_pred EEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC
Q 001163 578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD 639 (1134)
Q Consensus 578 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 639 (1134)
+-++=-..|+..+...-.-......+++. ..++++.+. +.|.||++.++++++.+...
T Consensus 209 -~g~fv~~~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 209 -IGVFVNKNGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred -eEEEEcCCCCcCcccEEEcCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 22332234443331111111134445553 457777766 45999999999999998753
No 371
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.29 E-value=0.00011 Score=81.22 Aligned_cols=159 Identities=13% Similarity=0.138 Sum_probs=107.1
Q ss_pred cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCce-ee-ecCCCCCeeEEEECc-CCCEEEEEecCCCCCeEEEEEeC
Q 001163 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR-VD-YDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYLVEWNE 584 (1134)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~-~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~ 584 (1134)
..+.|+++....+..+++.|..+|.|-+-.++..... .+ ...+....++++|++ |.+.|+++-.....+..+.+||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 3456666655555567888999999998877654333 22 233344788999987 55667766544455677999999
Q ss_pred CCC--eeE--EEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CceeEEEecCCCCCCcceEEEcC-CCcEEE
Q 001163 585 SEG--AVK--RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-VNLLASIDADGGLQASPCIRFNK-EGILLA 658 (1134)
Q Consensus 585 ~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~ 658 (1134)
.++ .+. ..|.+.......++||..+.+.+++|.....+.++|++- ......+. ...+..+...| .+.+++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYFC 212 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCcee
Confidence 887 222 223332223556889998888899998988999999872 22222222 23456778888 677877
Q ss_pred EEECCCcEEEEEc
Q 001163 659 VSTNDNGIKILAN 671 (1134)
Q Consensus 659 ~~~~dg~i~iw~~ 671 (1134)
+-. ||.|.+||.
T Consensus 213 s~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 213 SNS-DGDIAIWDT 224 (783)
T ss_pred ccc-cCceeeccc
Confidence 655 999999994
No 372
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.28 E-value=0.2 Score=54.07 Aligned_cols=231 Identities=13% Similarity=0.121 Sum_probs=129.6
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe----
Q 001163 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF---- 503 (1134)
Q Consensus 428 pd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---- 503 (1134)
..++.|+.|..+| +.++++........ + .+...|..+...++-+ .++.-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---I-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee---E-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccc
Confidence 3678999999999 89999833222221 1 1333499999999877 333333 499999998765443311
Q ss_pred ----------cCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCC-----ceeeecCCCCCeeEEEECcCCCEEEE
Q 001163 504 ----------EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG-----SRVDYDAPGHSSTMMAYSADGARLFS 568 (1134)
Q Consensus 504 ----------~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~ 568 (1134)
......+...+......+...+.....+.|.+|.+.... ...++.. ...+.+++|. ++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEE
Confidence 112234444441112222334444445688888876531 2223333 3567888888 556666
Q ss_pred EecCCCCCeEEEEEeCCCCeeEEEecCCCC-----------CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeE--E
Q 001163 569 CGTNKEGESYLVEWNESEGAVKRTYHGLGK-----------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA--S 635 (1134)
Q Consensus 569 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~ 635 (1134)
+..+ ...+.|+.++.....+..... .++..+.. +++.+|++- +..-.+.|. .|+..+ .
T Consensus 154 ~~~~-----~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 154 GTSK-----GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKST 224 (275)
T ss_pred EeCC-----ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccE
Confidence 6533 278889987766554432211 12333333 334555543 222233343 444333 3
Q ss_pred EecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCc
Q 001163 636 IDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRT 685 (1134)
Q Consensus 636 ~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 685 (1134)
+... .....+++. ..+|+..+. +.|.||++.++ .+++.+..+.
T Consensus 225 i~W~---~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~-~lvQ~i~~~~ 267 (275)
T PF00780_consen 225 IQWS---SAPQSVAYS--SPYLIAFSS-NSIEVRSLETG-ELVQTIPLPN 267 (275)
T ss_pred EEcC---CchhEEEEE--CCEEEEECC-CEEEEEECcCC-cEEEEEECCC
Confidence 3332 234455553 447766655 56999999999 7777776644
No 373
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.22 E-value=0.13 Score=56.95 Aligned_cols=220 Identities=14% Similarity=0.119 Sum_probs=117.3
Q ss_pred CEEEEEEccCCceeeeeeeeecCCCCEEEEE---EecCC--CceEEEEEeC----------CCeEEEEECCCC----cee
Q 001163 440 HIVHLYTYHGGDELRNHLEIEAHVGSVNDLA---FSYPN--KQLSVVTCGE----------DRVIKVWDAVTG----TKQ 500 (1134)
Q Consensus 440 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~---~s~~~--~~~~l~s~s~----------d~~i~iwd~~~~----~~~ 500 (1134)
..|++.|..+.+.+. ...+...+. +.+++ |..++ +..+++.|.. .|.|.++++... ..+
T Consensus 2 s~i~l~d~~~~~~~~-~~~l~~~E~-~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLD-SFELEPNEH-VTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL 79 (321)
T ss_dssp -EEEEEETTTSSEEE-EEEEETTEE-EEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred cEEEEEeCCCCeEEE-EEECCCCce-EEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence 358888888877664 334554333 44333 33221 1226666543 288999999884 222
Q ss_pred EEe--cCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeE
Q 001163 501 YIF--EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY 578 (1134)
Q Consensus 501 ~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 578 (1134)
..+ ....++|++++.. ++.++++. ++.|.+|++...+...........+........+++++.+-..+ ...
T Consensus 80 ~~i~~~~~~g~V~ai~~~---~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~--sv~ 152 (321)
T PF03178_consen 80 KLIHSTEVKGPVTAICSF---NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMK--SVS 152 (321)
T ss_dssp EEEEEEEESS-EEEEEEE---TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSS--SEE
T ss_pred EEEEEEeecCcceEhhhh---CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEccc--CEE
Confidence 222 2357889999853 22433333 48999999987772222222222223333334456777764322 333
Q ss_pred EEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC-------Cc--eeEEEecCCCCCCcceE-
Q 001163 579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-------VN--LLASIDADGGLQASPCI- 648 (1134)
Q Consensus 579 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~--~~~~~~~~~~~~~v~~v- 648 (1134)
+.-|+....+....-.......+.++.|-++++.++++..+|.+.++.... +. +......+- ...|+++
T Consensus 153 ~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~l-g~~v~~~~ 231 (321)
T PF03178_consen 153 LLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHL-GDIVNSFR 231 (321)
T ss_dssp EEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEE
T ss_pred EEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEEC-CCccceEE
Confidence 445565443344333333333678888886667999999999999998763 22 222222222 2356666
Q ss_pred --EEcC--CC------cEEEEEECCCcEEEE
Q 001163 649 --RFNK--EG------ILLAVSTNDNGIKIL 669 (1134)
Q Consensus 649 --~~sp--~~------~~l~~~~~dg~i~iw 669 (1134)
.+.| .+ ..++.++.+|.|...
T Consensus 232 ~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 232 RGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp E--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 4444 12 247888899998844
No 374
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.07 E-value=0.14 Score=55.05 Aligned_cols=198 Identities=13% Similarity=0.069 Sum_probs=114.6
Q ss_pred EEcCCCCeEEEee--CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEecc---
Q 001163 850 ALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK--- 924 (1134)
Q Consensus 850 ~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~--- 924 (1134)
.|.++...|+-.. .+.|.-|+..+++.. .+. ..+.+.++..-. .+..|++.. ..+++++..++..+..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence 4666777666555 678888988766433 222 233334444433 333444432 336677766555422221
Q ss_pred -C-ccCceEEEEEeeCCCEEEEEeC-----C----CcEEEEECC-CCccccceeeeecCCCCCCCCCceEEEEcCCCCEE
Q 001163 925 -G-HQKRITGLAFSNTLNVLVSSGA-----D----SQLCVWSTD-GWEKQASKFLTIPNGRTASALADTRVQFHLDQTHL 992 (1134)
Q Consensus 925 -~-h~~~V~~l~~s~d~~~l~s~s~-----D----g~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l 992 (1134)
+ -...-+.+...|+|.+.++... . ..-.+|-+. .+. ......++. ...+.++||||++.|
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-----~~~l~~~~~---~~~NGla~SpDg~tl 177 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-----VVRLLDDDL---TIPNGLAFSPDGKTL 177 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC-----EEEeecCcE---EecCceEECCCCCEE
Confidence 1 1244567888999988886544 1 111344444 222 222222211 134679999999888
Q ss_pred EEE--eeceEEEEeCCC--cccce---eeccCCCccCEEEEEEccCCCEEEEEecCC-cEEEeecCCCcceeecCCC
Q 001163 993 LAV--HETQIAIYEAPK--LECLK---QFVPREASGPITHATYSCDSQSIYVAFEEG-SVGVLTASTLRLRCRINPT 1061 (1134)
Q Consensus 993 ~~~--~d~~i~iwd~~~--~~~~~---~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg-~i~vwd~~~~~~~~~~~~~ 1061 (1134)
..+ ..+.|.-|++.. +.... ......+.+..-.++...+|.+-+++-.+| .|.+|+-+ |+++..+..+
T Consensus 178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP 253 (307)
T COG3386 178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP 253 (307)
T ss_pred EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC
Confidence 875 447788887752 22111 111122356677788888999876555554 89999988 8888877754
No 375
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.01 E-value=0.35 Score=53.99 Aligned_cols=82 Identities=13% Similarity=0.216 Sum_probs=59.1
Q ss_pred CeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCC-----------------CEE-E
Q 001163 553 SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK-----------------NRF-L 614 (1134)
Q Consensus 553 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~l-~ 614 (1134)
.+.+++.+|++++.++. |.-+.|.++|+.++..++.++|..+..+.-+.....+ .+| +
T Consensus 309 ~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred eEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 56789999998877664 3456799999999999999999877544433322221 122 2
Q ss_pred EEeCCCeEEEEEcCCCceeEEEec
Q 001163 615 AAGDEFMIKFWDMDNVNLLASIDA 638 (1134)
Q Consensus 615 ~~~~dg~i~iwd~~~~~~~~~~~~ 638 (1134)
-+-.-|.|.||+++.|..+..+..
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEEe
Confidence 344788999999999988887764
No 376
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.99 E-value=0.087 Score=58.27 Aligned_cols=216 Identities=12% Similarity=0.066 Sum_probs=116.3
Q ss_pred cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC----CCEEEEEeC----------CCEEEEE
Q 001163 380 DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD----GTLFGVAYS----------KHIVHLY 445 (1134)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----~~~las~s~----------dg~v~iw 445 (1134)
.|+|.|..+.+.+....+. -..+-..+..+.|..+ ..++++|.. .|.|.++
T Consensus 3 ~i~l~d~~~~~~~~~~~l~---------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~ 67 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELE---------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVF 67 (321)
T ss_dssp EEEEEETTTSSEEEEEEEE---------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEE
T ss_pred EEEEEeCCCCeEEEEEECC---------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEE
Confidence 4788888877766543332 0112223333444433 568888753 2899999
Q ss_pred EccCC----ceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc-eeEEe-cCCCcCEEEEeccccC
Q 001163 446 TYHGG----DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-KQYIF-EGHESPVYSICPHHKE 519 (1134)
Q Consensus 446 d~~~~----~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~-~~h~~~v~~~~~~~~~ 519 (1134)
++... ..++.... ....++|++++-. ++. ++++. .+.|.+|++...+ .+..- ......+.++... .
T Consensus 68 ~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~--lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~ 139 (321)
T PF03178_consen 68 EISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR--LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K 139 (321)
T ss_dssp EECSS-----EEEEEEE-EEESS-EEEEEEE-TTE--EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T
T ss_pred EEEcccccceEEEEEEE-EeecCcceEhhhh-CCE--EEEee--cCEEEEEEccCcccchhhheecceEEEEEEecc--c
Confidence 99984 23333322 3457889999876 343 33333 3799999998877 44322 2233366666543 3
Q ss_pred CccEEEEecCCCcEEEEecCCCCceeee---cCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC-------C--
Q 001163 520 NIQFIFSTATDGKIKAWLYDNLGSRVDY---DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE-------G-- 587 (1134)
Q Consensus 520 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-------~-- 587 (1134)
++++.|.....+.++.++........ ......++++.+-++++.++.+-. .+.+.++.... +
T Consensus 140 --~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~----~gnl~~l~~~~~~~~~~~~~~ 213 (321)
T PF03178_consen 140 --NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK----DGNLFVLRYNPEIPNSRDGDP 213 (321)
T ss_dssp --TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET----TSEEEEEEE-SS-SSTTTTTT
T ss_pred --cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC----CCeEEEEEECCCCcccccccc
Confidence 58999999899888866653332222 222346788888867665555532 33466554431 1
Q ss_pred eeEEEecCCCCCceEEE---EEcC--CCC------EEEEEeCCCeEEE
Q 001163 588 AVKRTYHGLGKRSVGVV---QFDT--TKN------RFLAAGDEFMIKF 624 (1134)
Q Consensus 588 ~~~~~~~~~~~~~v~~~---~~~~--~~~------~l~~~~~dg~i~i 624 (1134)
+......-|-+..++++ ++.| .+. .++.++.+|.|.+
T Consensus 214 ~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 214 KLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp BEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred cceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 23333333333356555 3334 111 3666667777663
No 377
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.94 E-value=0.43 Score=54.32 Aligned_cols=210 Identities=14% Similarity=0.150 Sum_probs=108.4
Q ss_pred EEEcCCCCEEEEEeCC----------C-EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163 424 VMWSPDGTLFGVAYSK----------H-IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (1134)
Q Consensus 424 l~~spd~~~las~s~d----------g-~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 492 (1134)
++.+|.|..+|....+ . .|+||+.... .+... .+.. +.|.++.|+.+.. |+.-..||.++++
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~-ll~~i-~w~~--~~iv~~~wt~~e~---LvvV~~dG~v~vy 106 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGK-LLSSI-PWDS--GRIVGMGWTDDEE---LVVVQSDGTVRVY 106 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCC-EeEEE-EECC--CCEEEEEECCCCe---EEEEEcCCEEEEE
Confidence 4556666666655433 2 5899987654 34432 3444 7899999998665 6777899999999
Q ss_pred ECCCCceeEEe-------cCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCcee-ee-cCCCC--------Cee
Q 001163 493 DAVTGTKQYIF-------EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV-DY-DAPGH--------SST 555 (1134)
Q Consensus 493 d~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~-~~~~~--------~v~ 555 (1134)
|+. |+....+ .-....+....+ ..+| ++.-..++.+.+.+--...... .+ ..... ...
T Consensus 107 ~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~--~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~ 181 (410)
T PF04841_consen 107 DLF-GEFQFSLGEEIEEEKVLECRIFAIWF--YKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWT 181 (410)
T ss_pred eCC-CceeechhhhccccCccccccccccc--CCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccc
Confidence 975 4442111 111111222221 2244 2222334444433211111010 00 00000 000
Q ss_pred E-EEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeE
Q 001163 556 M-MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA 634 (1134)
Q Consensus 556 ~-~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 634 (1134)
. ..++.+....+....+ ..+.+.+....+. +. ..+++..+++||++++++.-..+|.+.+.+.+-.+.+.
T Consensus 182 ~i~~l~~~~~~~i~~~~g----~~i~~i~~~~~~~---i~--~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~ 252 (410)
T PF04841_consen 182 VIPLLSSDRVVEILLANG----ETIYIIDENSFKQ---ID--SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLC 252 (410)
T ss_pred cceEeecCcceEEEEecC----CEEEEEEcccccc---cc--CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeE
Confidence 0 1233333333332211 1233222221111 11 12378999999999999999999999999877666666
Q ss_pred EEecCCCCCCcceEEEcCCCc
Q 001163 635 SIDADGGLQASPCIRFNKEGI 655 (1134)
Q Consensus 635 ~~~~~~~~~~v~~v~~sp~~~ 655 (1134)
.+... .......+.|.-+..
T Consensus 253 e~~~~-~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 253 EFDTD-SKSPPKQMAWCGNDA 272 (410)
T ss_pred EeecC-cCCCCcEEEEECCCc
Confidence 66543 223556778876543
No 378
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0034 Score=69.91 Aligned_cols=94 Identities=17% Similarity=0.423 Sum_probs=71.0
Q ss_pred CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEE-EEEEcCCCCEEE
Q 001163 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVN-RVMWSPDGTLFG 434 (1134)
Q Consensus 356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~spd~~~la 434 (1134)
...|.-+.|+|.-. |+|++..+|.|.+..+. -+ |+|. +.-|...|+ +++|.|||++||
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~q-------Rlwt------------ip~p~~~v~~sL~W~~DGklla 78 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQ-------RLWT------------IPIPGENVTASLCWRPDGKLLA 78 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEec-cc-------eeEe------------ccCCCCccceeeeecCCCCEEE
Confidence 34677899999888 88999999999998876 32 2343 233555666 999999999999
Q ss_pred EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEe
Q 001163 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS 472 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s 472 (1134)
+|-.||+|++-|+.++..+... +..-...|.++-|.
T Consensus 79 Vg~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 79 VGFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWD 114 (665)
T ss_pred EEecCCeEEEEEccCCCceecc--ccccccchheeecc
Confidence 9999999999999998765431 12234556666665
No 379
>PRK10115 protease 2; Provisional
Probab=96.88 E-value=0.85 Score=55.77 Aligned_cols=245 Identities=9% Similarity=0.037 Sum_probs=123.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCC-----CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC-----Ce
Q 001163 419 ASVNRVMWSPDGTLFGVAYSK-----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RV 488 (1134)
Q Consensus 419 ~~V~~l~~spd~~~las~s~d-----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d-----~~ 488 (1134)
-.+..+.|||||++||.+... ..|++-|+.+|..+.. .+.+ .-..++|++|++. ++++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~---~~~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN---VEPSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC---cceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 457778999999999886432 3588999988863321 1222 1146999999985 33433322 47
Q ss_pred EEEEECCCC--ceeEEecCCCcCEEEEeccccCCccEEEEec---CCCcEEEEecCC--CCceeeecCCCCCeeEEEECc
Q 001163 489 IKVWDAVTG--TKQYIFEGHESPVYSICPHHKENIQFIFSTA---TDGKIKAWLYDN--LGSRVDYDAPGHSSTMMAYSA 561 (1134)
Q Consensus 489 i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~s~ 561 (1134)
|..+++.++ +....+........ +......++.+++..+ .++.+.+++... ......+.........+. .
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~- 277 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-H- 277 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-e-
Confidence 888898888 33344443333333 2222233445544433 235688888533 222222222222222222 2
Q ss_pred CCCEEEEEecCCCCCeEEEEEeCC-CCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CceeEEEecC
Q 001163 562 DGARLFSCGTNKEGESYLVEWNES-EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-VNLLASIDAD 639 (1134)
Q Consensus 562 ~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~ 639 (1134)
.+..+...+..+.....|...++. .++....+.......+..+.+. .+..+++...+|.-+++-+.. +..+..+...
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~ 356 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIAFD 356 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEecCC
Confidence 234444444333334456666665 2333333333233367777776 334455555677655554432 2234443311
Q ss_pred CCCCCcceEEEc--CCCc-EEEEEEC---CCcEEEEEccCC
Q 001163 640 GGLQASPCIRFN--KEGI-LLAVSTN---DNGIKILANADG 674 (1134)
Q Consensus 640 ~~~~~v~~v~~s--p~~~-~l~~~~~---dg~i~iw~~~~~ 674 (1134)
. ...+..+.++ +++. ++++.+. -+.+..+|..++
T Consensus 357 ~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 357 D-PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred C-CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 1 1122223344 3333 4443332 367777777665
No 380
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.83 E-value=1.2 Score=49.88 Aligned_cols=289 Identities=13% Similarity=0.102 Sum_probs=154.9
Q ss_pred CceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcC-----CCCeEEEee
Q 001163 788 GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK-----NDSYVMSAS 862 (1134)
Q Consensus 788 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~-----dg~~la~~s 862 (1134)
...+++|+..|.++||+-....+.+.. .++... -..+|..+..-. +...||+-.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~----------------lllE~~-----l~~PILqv~~G~F~s~~~~~~LaVLh 95 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPED----------------LLLETQ-----LKDPILQVECGKFVSGSEDLQLAVLH 95 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCcc----------------EEEEEe-----cCCcEEEEEeccccCCCCcceEEEec
Confidence 457899999999999975433222211 111111 234555555431 334566655
Q ss_pred CCeEEEEEccC--Ce-------EEEEecCCC--CCeEEEEEcCC----CCcEEEEEeCCCcEEEEEcccceEEEeccCcc
Q 001163 863 GGKISLFNMMT--FK-------TMTTFMPPP--PAATFLAFHPQ----DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQ 927 (1134)
Q Consensus 863 dg~i~lwd~~~--~~-------~~~~~~~~~--~~v~~l~~sp~----~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~ 927 (1134)
-.++.||.+.. +. .+..+..|. .....+++-|- +..++.+-+-||.+.+|+-+.-...+.+.. .
T Consensus 96 P~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ 174 (418)
T PF14727_consen 96 PRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-F 174 (418)
T ss_pred CCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-C
Confidence 67777777621 11 111111222 22333333331 246888999999999999776554445544 2
Q ss_pred CceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccc-------------------cceeeeecCCCCCCCCCceEEEEcCC
Q 001163 928 KRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQ-------------------ASKFLTIPNGRTASALADTRVQFHLD 988 (1134)
Q Consensus 928 ~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~-------------------~~~~~~~~~~~~~~~~~v~~l~fs~d 988 (1134)
--...++|.+.-..+++++.+..+.-|....-... ...--...-|... -.+..+.++..
T Consensus 175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~--l~i~v~~~~~~ 252 (418)
T PF14727_consen 175 LLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQA--LDIQVVRFSSS 252 (418)
T ss_pred CCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCcee--EEEEEEEcCCC
Confidence 22234678888889999999988888875320000 0000001111111 12334444444
Q ss_pred CCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEE-E----ccCCC---EEEEEecCCcEEEeecCCCcceeecCC
Q 001163 989 QTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHAT-Y----SCDSQ---SIYVAFEEGSVGVLTASTLRLRCRINP 1060 (1134)
Q Consensus 989 g~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~-~----s~dg~---~l~s~s~Dg~i~vwd~~~~~~~~~~~~ 1060 (1134)
...+++-..+++.+.+.. |.......... ...+++ | ..++. .++.++.++++.||.-.+...-+.+.
T Consensus 253 ~~~IvvLger~Lf~l~~~-G~l~~~krLd~---~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~- 327 (418)
T PF14727_consen 253 ESDIVVLGERSLFCLKDN-GSLRFQKRLDY---NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP- 327 (418)
T ss_pred CceEEEEecceEEEEcCC-CeEEEEEecCC---ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC-
Confidence 445555556667776663 44444433222 112221 1 11322 47889999999999866655544443
Q ss_pred CcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCCCCccCCCCCC
Q 001163 1061 TAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPNE 1115 (1134)
Q Consensus 1061 ~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~~~~ 1115 (1134)
+ . ..++.++..+.-...|++-+.+|.|.+-=+- .+..--..||.+
T Consensus 328 --~------~-PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLG-TdPs~~~~p~~~ 372 (418)
T PF14727_consen 328 --H------V-PVALSVANFNGLKGLIVSLSDEGQLSVSYLG-TDPSLFQVPPLE 372 (418)
T ss_pred --C------C-CEEEEecccCCCCceEEEEcCCCcEEEEEeC-CCCccccCCCcc
Confidence 1 1 1244445444456799999999999886443 343333445544
No 381
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.81 E-value=0.39 Score=51.69 Aligned_cols=224 Identities=14% Similarity=0.093 Sum_probs=133.2
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCC
Q 001163 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 440 (1134)
Q Consensus 361 ~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg 440 (1134)
+-.|.+++..|+.+--..+.|.-||..+++... ..+.+.+.++..-.++..|+++...
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~---------------------~~~p~~~~~~~~~d~~g~Lv~~~~g- 86 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV---------------------FPSPGGFSSGALIDAGGRLIACEHG- 86 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE---------------------EECCCCcccceeecCCCeEEEEccc-
Confidence 446778888787887788899999998775432 1133445555555555566655333
Q ss_pred EEEEEEccCCceeeeeeeee-cC-CCCEEEEEEecCCCceEEEEEeCC-----C-----eEEEEECC-CCceeEEecCCC
Q 001163 441 IVHLYTYHGGDELRNHLEIE-AH-VGSVNDLAFSYPNKQLSVVTCGED-----R-----VIKVWDAV-TGTKQYIFEGHE 507 (1134)
Q Consensus 441 ~v~iwd~~~~~~~~~~~~l~-~h-~~~V~~v~~s~~~~~~~l~s~s~d-----~-----~i~iwd~~-~~~~~~~~~~h~ 507 (1134)
+.+++.+++.......... +. ....+.+...|+|. +..+... . .-.+|-+. .+..++.+..+-
T Consensus 87 -~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~---~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~ 162 (307)
T COG3386 87 -VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR---IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL 162 (307)
T ss_pred -cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC---EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcE
Confidence 5777776655422221111 22 24567788889998 3333333 1 11344444 566666666666
Q ss_pred cCEEEEeccccCCccEEEEe-cCCCcEEEEecCC-----CCc--eeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEE
Q 001163 508 SPVYSICPHHKENIQFIFST-ATDGKIKAWLYDN-----LGS--RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYL 579 (1134)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~-----~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 579 (1134)
..-+.|+|++++ +.++.+ +..+.|.-|++.. ... ........+..-.++...+|.+-+++... ...|
T Consensus 163 ~~~NGla~SpDg--~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~---g~~v 237 (307)
T COG3386 163 TIPNGLAFSPDG--KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG---GGRV 237 (307)
T ss_pred EecCceEECCCC--CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---CceE
Confidence 666788997655 455544 5557888887762 111 11122223344567777888877544322 1259
Q ss_pred EEEeCCCCeeEEEecCCCCCceEEEEEc-CCCCEEEEEe
Q 001163 580 VEWNESEGAVKRTYHGLGKRSVGVVQFD-TTKNRFLAAG 617 (1134)
Q Consensus 580 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 617 (1134)
..|+.. |+.+..+..... .+.+++|. ++.+.|++.+
T Consensus 238 ~~~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 238 VRFNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 999988 998888887754 66777775 4445555554
No 382
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.81 E-value=0.068 Score=64.05 Aligned_cols=148 Identities=14% Similarity=0.098 Sum_probs=97.6
Q ss_pred CCcEEEEE-eCCCcEEEEEcccceEEEeccCccCc-eEEEEEee-----CCCEEEEEeCCCcEEEEECCCCccccceeee
Q 001163 896 DNNIIAIG-MEDSSIQIYNVRVDEVKTKLKGHQKR-ITGLAFSN-----TLNVLVSSGADSQLCVWSTDGWEKQASKFLT 968 (1134)
Q Consensus 896 ~~~~la~g-~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~s~-----d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~ 968 (1134)
+..+|... .....|+-.|+..|+.+..+..|... |..++-.. .....+.|-.+..+..||..-.. ..++.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC---Cceee
Confidence 44454443 35578999999999999999988754 55543321 12234556667889999987532 11221
Q ss_pred ecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEee
Q 001163 969 IPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLT 1048 (1134)
Q Consensus 969 ~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd 1048 (1134)
.............|++-+.+|..++.+.+|.||+||-. |...++.. .+-..+|..|+.+.||++|++.+ +.++.+++
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~l-p~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~ 645 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTAL-PGLGDPIIGIDVTADGKWILATC-KTYLLLID 645 (794)
T ss_pred ccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhhcC-CCCCCCeeEEEecCCCcEEEEee-cceEEEEE
Confidence 11111111245678888888887777899999999954 43333332 25578999999999999987555 57788888
Q ss_pred c
Q 001163 1049 A 1049 (1134)
Q Consensus 1049 ~ 1049 (1134)
.
T Consensus 646 t 646 (794)
T PF08553_consen 646 T 646 (794)
T ss_pred E
Confidence 5
No 383
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.78 E-value=0.039 Score=66.01 Aligned_cols=145 Identities=14% Similarity=0.176 Sum_probs=96.7
Q ss_pred CCceEEEEEeCCCeEEEEECCCCceeEEecCCCcC-EEEEecccc----CCccEEEEecCCCcEEEEecCCCCceeee-c
Q 001163 475 NKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP-VYSICPHHK----ENIQFIFSTATDGKIKAWLYDNLGSRVDY-D 548 (1134)
Q Consensus 475 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~----~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~ 548 (1134)
.+.++|........|+-.|+.+|+.+..+..|... |..++-... .+ ...+.|-.+..+..||.+..+..... .
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~-e~tflGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTN-EQTFLGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCC-CceEEEECCCceEEeccCCCCCceeecc
Confidence 34434445556688999999999999999887754 776653211 12 34556777888999999875532221 1
Q ss_pred ----CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 001163 549 ----APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKF 624 (1134)
Q Consensus 549 ----~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 624 (1134)
.......+++-+.+| +||+|+..|+ |++||--..+....+++... +|..+..+.||+++++.+. ..|.+
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~----IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc~-tyLlL 643 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDG-YIAVGSNKGD----IRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATCK-TYLLL 643 (794)
T ss_pred ccccccCCCceEEEecCCc-eEEEEeCCCc----EEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEeec-ceEEE
Confidence 123367778777777 5666765443 99999543333344555554 9999999999999998875 45666
Q ss_pred EEc
Q 001163 625 WDM 627 (1134)
Q Consensus 625 wd~ 627 (1134)
++.
T Consensus 644 i~t 646 (794)
T PF08553_consen 644 IDT 646 (794)
T ss_pred EEE
Confidence 554
No 384
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.76 E-value=0.091 Score=45.73 Aligned_cols=102 Identities=14% Similarity=0.153 Sum_probs=67.4
Q ss_pred EEEEEEcC-CC---CEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC
Q 001163 421 VNRVMWSP-DG---TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT 496 (1134)
Q Consensus 421 V~~l~~sp-d~---~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~ 496 (1134)
|++|++.. |+ +.|++|+.|..|+||+-.. .+. .+. -.+.|++++-...+ .++.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~---Ei~-e~~~v~~L~~~~~~---~F~Y~l~NGTVGvY~~-- 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVA---EIT-ETDKVTSLCSLGGG---RFAYALANGTVGVYDR-- 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEE---EEe-cccceEEEEEcCCC---EEEEEecCCEEEEEeC--
Confidence 67777776 33 5899999999999998653 232 233 34567777777665 4899999999999973
Q ss_pred CceeEEecCCCcCEEEEe-ccccCCc-cEEEEecCCCcEE
Q 001163 497 GTKQYIFEGHESPVYSIC-PHHKENI-QFIFSTATDGKIK 534 (1134)
Q Consensus 497 ~~~~~~~~~h~~~v~~~~-~~~~~~~-~~l~s~s~dg~i~ 534 (1134)
...+...+.... +.+++ +..+.+| .-|++|-.+|.|-
T Consensus 71 ~~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 SQRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 344455553333 55554 4334333 3577887777763
No 385
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.75 E-value=0.34 Score=54.12 Aligned_cols=93 Identities=16% Similarity=0.217 Sum_probs=62.3
Q ss_pred EEEEcCCCCEEEEEeCCCEEEE---EEccC-C--c-eee--eeeeeecCC-CCEEEEEEecC---C------CceEEEEE
Q 001163 423 RVMWSPDGTLFGVAYSKHIVHL---YTYHG-G--D-ELR--NHLEIEAHV-GSVNDLAFSYP---N------KQLSVVTC 483 (1134)
Q Consensus 423 ~l~~spd~~~las~s~dg~v~i---wd~~~-~--~-~~~--~~~~l~~h~-~~V~~v~~s~~---~------~~~~l~s~ 483 (1134)
+++.+|++++||.+..+..+.+ |+... + . ... -...+..-. ..|+++.|-|= . ....++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4688999999999988887665 64421 1 1 111 111122111 46887777552 1 12389999
Q ss_pred eCCCeEEEEECCCCceeEEecCCCcCEEEEecc
Q 001163 484 GEDRVIKVWDAVTGTKQYIFEGHESPVYSICPH 516 (1134)
Q Consensus 484 s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 516 (1134)
..+|.|++|. ++|..+..-.-|..+|..+...
T Consensus 86 ~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEe-ccchHHHHHhcCccceEEEEec
Confidence 9999999999 6888877666689999988754
No 386
>PHA02713 hypothetical protein; Provisional
Probab=96.71 E-value=0.12 Score=61.55 Aligned_cols=199 Identities=11% Similarity=-0.011 Sum_probs=105.0
Q ss_pred CCcEEEEEeCC------CcEEEEEcccceEE--EeccCccCceEEEEEeeCCCEEEEEeCCC-----cEEEEECCCCccc
Q 001163 896 DNNIIAIGMED------SSIQIYNVRVDEVK--TKLKGHQKRITGLAFSNTLNVLVSSGADS-----QLCVWSTDGWEKQ 962 (1134)
Q Consensus 896 ~~~~la~g~~d------g~i~iwd~~~~~~~--~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~i~iwd~~~~~~~ 962 (1134)
++.+.+.|+.+ ..+..||..+.+-. ..+..... ...+..-+|+..+.||.++ ++..||..+++
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~--~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~-- 378 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRC--RFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDK-- 378 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhh--ceeEEEECCEEEEECCcCCCCCCceEEEEECCCCe--
Confidence 67788888854 34778888766422 22221111 1122334788888888764 37889987643
Q ss_pred cceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-ee-----------------------ceEEEEeCCCcccceeeccCC
Q 001163 963 ASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HE-----------------------TQIAIYEAPKLECLKQFVPRE 1018 (1134)
Q Consensus 963 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d-----------------------~~i~iwd~~~~~~~~~~~~~~ 1018 (1134)
+..+....... .....+ .-+|+..++| .+ ..+..||..+.+....-..
T Consensus 379 -W~~~~~mp~~r---~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m-- 450 (557)
T PHA02713 379 -WKMLPDMPIAL---SSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF-- 450 (557)
T ss_pred -EEECCCCCccc---ccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC--
Confidence 22221111100 111122 2356666654 22 2477888876653211110
Q ss_pred CccCEEEEEEccCCCEEEEEecC------CcEEEeecCC-CcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEe
Q 001163 1019 ASGPITHATYSCDSQSIYVAFEE------GSVGVLTAST-LRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGL 1091 (1134)
Q Consensus 1019 h~~~v~~~~~s~dg~~l~s~s~D------g~i~vwd~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~ 1091 (1134)
.......-+..-+|+..+.|+.+ ..+..||..+ .+.... . .+|.. ... ..+++. ++.+.++||
T Consensus 451 ~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~-~---~m~~~-r~~-~~~~~~----~~~iyv~Gg 520 (557)
T PHA02713 451 WTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI-T---TTESR-LSA-LHTILH----DNTIMMLHC 520 (557)
T ss_pred CcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc-c---ccCcc-ccc-ceeEEE----CCEEEEEee
Confidence 01111112223467777777654 2467899887 444311 1 11111 011 122222 688999999
Q ss_pred cCC--cEEEEeCCCCCCCccCCCCCCCCC
Q 001163 1092 TDG--GVYIIEPLEAEGRWGTSPPNENGA 1118 (1134)
Q Consensus 1092 ~Dg--~v~vW~~~~~~~~~~~~~~~~~~~ 1118 (1134)
.|| ++-.||+...+ |...+|+-.++
T Consensus 521 ~~~~~~~e~yd~~~~~--W~~~~~~~~~~ 547 (557)
T PHA02713 521 YESYMLQDTFNVYTYE--WNHICHQHSNS 547 (557)
T ss_pred ecceeehhhcCccccc--ccchhhhcCCc
Confidence 999 77777777655 99988887544
No 387
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.71 E-value=0.0032 Score=43.38 Aligned_cols=39 Identities=33% Similarity=0.550 Sum_probs=34.5
Q ss_pred ceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001163 917 DEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955 (1134)
Q Consensus 917 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd 955 (1134)
++.+..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
No 388
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.043 Score=60.13 Aligned_cols=201 Identities=11% Similarity=0.146 Sum_probs=118.2
Q ss_pred CCCEEEEEEcC-CCCEEEEEeCC------CEEEEEEccCCceeeee----eeeecCCCCEEEEEEecCCCceEEEEEeCC
Q 001163 418 TASVNRVMWSP-DGTLFGVAYSK------HIVHLYTYHGGDELRNH----LEIEAHVGSVNDLAFSYPNKQLSVVTCGED 486 (1134)
Q Consensus 418 ~~~V~~l~~sp-d~~~las~s~d------g~v~iwd~~~~~~~~~~----~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d 486 (1134)
.+.|.++++.. +..+|+.+..+ ..|-|+.-+.|-+++.- ....+|+-.-.-+-.......+++.++...
T Consensus 276 ~~~i~sl~~~a~~NS~Lvv~~~ns~V~Rn~~iGVfk~ekgl~f~~~i~n~s~~~g~S~~P~K~mL~~~dsnlil~~~~~~ 355 (644)
T KOG2395|consen 276 EGGIGSLDEGALDNSFLVVGYGNSYVTRNNRIGVFKNEKGLEFKAAIKNVSDGDGKSIDPHKAMLHRADSNLILMDGGEQ 355 (644)
T ss_pred hcccchhhhcccCCceEEecccceEEEecceeeeeccCCceEEEeccCcccCCCccccCcchhhhhccccceEeeCCCCc
Confidence 45677788876 55667766553 22333332222211100 001122211111222223344467777777
Q ss_pred CeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEE-----EEecCCCcEEEEecCCCCc-eeee-cC----CCCCee
Q 001163 487 RVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFI-----FSTATDGKIKAWLYDNLGS-RVDY-DA----PGHSST 555 (1134)
Q Consensus 487 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-----~s~s~dg~i~vwd~~~~~~-~~~~-~~----~~~~v~ 555 (1134)
..++-.|++.|+.+.++.-|.. |+-+.+.++..+..+ +.|-.|..|.-||++-... .... .. ......
T Consensus 356 ~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFs 434 (644)
T KOG2395|consen 356 DKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFS 434 (644)
T ss_pred CcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccc
Confidence 8899999999999999987776 665666555444333 3455688899999885443 1111 11 122455
Q ss_pred EEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001163 556 MMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 626 (1134)
Q Consensus 556 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 626 (1134)
|.+-..+| ++++++.+++ |++||--..+....+++... +|..+..+.+|+++++.+. ..+.+-+
T Consensus 435 c~aTT~sG-~IvvgS~~Gd----IRLYdri~~~AKTAlPgLG~-~I~hVdvtadGKwil~Tc~-tyLlLi~ 498 (644)
T KOG2395|consen 435 CFATTESG-YIVVGSLKGD----IRLYDRIGRRAKTALPGLGD-AIKHVDVTADGKWILATCK-TYLLLID 498 (644)
T ss_pred eeeecCCc-eEEEeecCCc----EEeehhhhhhhhhcccccCC-ceeeEEeeccCcEEEEecc-cEEEEEE
Confidence 66655555 6777777654 99999733344445666655 8999999999999988775 3444444
No 389
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.64 E-value=0.72 Score=50.67 Aligned_cols=149 Identities=13% Similarity=0.089 Sum_probs=72.8
Q ss_pred ccEEEEec-CCCcEEEEecCCCCcee----eecC---C--C--CCeeEEEECcCCCEEEEEe--cCCCCCeEEEEEeCCC
Q 001163 521 IQFIFSTA-TDGKIKAWLYDNLGSRV----DYDA---P--G--HSSTMMAYSADGARLFSCG--TNKEGESYLVEWNESE 586 (1134)
Q Consensus 521 ~~~l~s~s-~dg~i~vwd~~~~~~~~----~~~~---~--~--~~v~~~~~s~~~~~l~~~~--~~~~~~~~i~~wd~~~ 586 (1134)
.++|+..+ ..+.|.+.|+.+..... .++. . . ..-..+-.-|+|+.++++- .++++.+-+.+.|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 35666655 67889999987433221 1111 0 0 1122344568898888764 3445667799999998
Q ss_pred CeeEEEecCCCC--CceEEEEEcCCCCEEEEEe--------------------CCCeEEEEEcCCCceeEEEecCCCCCC
Q 001163 587 GAVKRTYHGLGK--RSVGVVQFDTTKNRFLAAG--------------------DEFMIKFWDMDNVNLLASIDADGGLQA 644 (1134)
Q Consensus 587 ~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~ 644 (1134)
.+....+..... ..-..+-+.|..+.+++.. ...++.+||+.+.+.++++........
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 888888766433 2345677888888888753 246799999999999999986433233
Q ss_pred cceEEEcC--CCcEEEEEE-CCCcEEEE
Q 001163 645 SPCIRFNK--EGILLAVST-NDNGIKIL 669 (1134)
Q Consensus 645 v~~v~~sp--~~~~l~~~~-~dg~i~iw 669 (1134)
...+.|.. +..+-++++ -..+|..|
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~ 274 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRF 274 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred eEEEEecCCCCccceEEEEeccceEEEE
Confidence 45666654 444433332 33444444
No 390
>PRK10115 protease 2; Provisional
Probab=96.63 E-value=2.8 Score=51.33 Aligned_cols=244 Identities=11% Similarity=0.034 Sum_probs=122.2
Q ss_pred CeeEEEEcCCCCeEEEEEeCCC----cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001163 358 AVKSMDFHPVQQILLVVGTNMG----DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (1134)
Q Consensus 358 ~V~~v~fsp~g~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 433 (1134)
.+..+.|||||++|+.+.+.+| .|++-|+.+|+.+.. .+.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------------------~i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------------------LLDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------------------cccC---cceEEEEeeCCCEE
Confidence 4667889999997766655554 588999988764321 0111 11569999999877
Q ss_pred EEEeCC------CEEEEEEccCCceeeeeeeeecCCCCEE-EEEEecCCCceEEEEEe-CCCeEEEEECC--CCceeEEe
Q 001163 434 GVAYSK------HIVHLYTYHGGDELRNHLEIEAHVGSVN-DLAFSYPNKQLSVVTCG-EDRVIKVWDAV--TGTKQYIF 503 (1134)
Q Consensus 434 as~s~d------g~v~iwd~~~~~~~~~~~~l~~h~~~V~-~v~~s~~~~~~~l~s~s-~d~~i~iwd~~--~~~~~~~~ 503 (1134)
+....+ ..|..+++.++..-. ...+........ .+..+.+++.+++.+.+ .++.+.+++.. ++.....+
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d-~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQD-ELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL 265 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHC-eEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence 766442 367888888873111 112333333333 33334477753322222 24578888843 34322222
Q ss_pred cCCCcCEEEEeccccCCccEEEEecCC---CcEEEEecCCCC-ceeeecCC-CCCeeEEEECcCCCEEEEEecCCCCCeE
Q 001163 504 EGHESPVYSICPHHKENIQFIFSTATD---GKIKAWLYDNLG-SRVDYDAP-GHSSTMMAYSADGARLFSCGTNKEGESY 578 (1134)
Q Consensus 504 ~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~-~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 578 (1134)
..-......+. +. .+ .+++....+ ..|...++.... ....+... ...+..+.++ ++.|+..... ++...
T Consensus 266 ~~~~~~~~~~~-~~-~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~-~g~~~ 339 (686)
T PRK10115 266 PRRKDHEYSLD-HY-QH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQ-RGLTS 339 (686)
T ss_pred ECCCCCEEEEE-eC-CC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEe-CCEEE
Confidence 21112222222 21 22 333333222 234334444212 22223221 2367777776 4455544433 34666
Q ss_pred EEEEeCCCCeeEEEec-CCCCCceEEEEEc--CCCC-EEEEEe---CCCeEEEEEcCCCc
Q 001163 579 LVEWNESEGAVKRTYH-GLGKRSVGVVQFD--TTKN-RFLAAG---DEFMIKFWDMDNVN 631 (1134)
Q Consensus 579 i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~--~~~~-~l~~~~---~dg~i~iwd~~~~~ 631 (1134)
+.+++..++. +..+. .... .+..+.++ +++. .+++.+ .-+.++.+|..+++
T Consensus 340 l~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 340 LRQINRKTRE-VIGIAFDDPA-YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEcCCCCc-eEEecCCCCc-eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 8888876443 33333 1111 22333344 3433 444333 45788999988765
No 391
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.56 E-value=3.1 Score=51.00 Aligned_cols=64 Identities=9% Similarity=0.032 Sum_probs=43.6
Q ss_pred ceEEEEeCCCcccceeeccCCCc----------------cCEEEEEEccCCCEEEE-EecCCcEEEeecCCCcceeecCC
Q 001163 998 TQIAIYEAPKLECLKQFVPREAS----------------GPITHATYSCDSQSIYV-AFEEGSVGVLTASTLRLRCRINP 1060 (1134)
Q Consensus 998 ~~i~iwd~~~~~~~~~~~~~~h~----------------~~v~~~~~s~dg~~l~s-~s~Dg~i~vwd~~~~~~~~~~~~ 1060 (1134)
|.|.-+|+.+++.+-+.....+. .....-...-.|.+++. ++.|+.++-+|.++|+.+.+...
T Consensus 641 G~l~AiDl~tGk~~W~~~~g~~~~~~p~~~~~~~~~~~g~p~~gG~l~TagglvF~~gt~d~~l~A~D~~tGk~lW~~~l 720 (764)
T TIGR03074 641 GYMAAIDLKTGKVVWQHPNGTVRDTGPMGIRMPLPIPIGVPTLGGPLATAGGLVFIGATQDNYLRAYDLSTGKELWKARL 720 (764)
T ss_pred EEEEEEECCCCcEeeeeECCccccccccccccccccccCCcccCCcEEEcCCEEEEEeCCCCEEEEEECCCCceeeEeeC
Confidence 77888999988877665532110 11112223346677766 78999999999999999988774
Q ss_pred C
Q 001163 1061 T 1061 (1134)
Q Consensus 1061 ~ 1061 (1134)
.
T Consensus 721 ~ 721 (764)
T TIGR03074 721 P 721 (764)
T ss_pred C
Confidence 4
No 392
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.53 E-value=0.83 Score=48.13 Aligned_cols=147 Identities=15% Similarity=0.050 Sum_probs=88.2
Q ss_pred CeEEEEEcCCCCcEEEEEe-CC--CcEEEEEcccceEEEe-ccCccCceEEEEEeeCCCEEEEEeCCCcEEEEE-CCCCc
Q 001163 886 AATFLAFHPQDNNIIAIGM-ED--SSIQIYNVRVDEVKTK-LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS-TDGWE 960 (1134)
Q Consensus 886 ~v~~l~~sp~~~~~la~g~-~d--g~i~iwd~~~~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd-~~~~~ 960 (1134)
.+...++++ +++.+|... .+ ..++++.. +..... +.+ ..++.-.|++++...+....+...+++. ...++
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999 666665544 23 34555543 332222 233 3678889999988777777677677774 23332
Q ss_pred cccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEe----eceEEEEeCC---Cc--ccc-eeecc-CCCccCEEEEEEc
Q 001163 961 KQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVH----ETQIAIYEAP---KL--ECL-KQFVP-REASGPITHATYS 1029 (1134)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~----d~~i~iwd~~---~~--~~~-~~~~~-~~h~~~v~~~~~s 1029 (1134)
.. ...+.-.... ..|..+.+||||..++.-. ++.|.+--+. .+ ..+ ..... ......++++.|.
T Consensus 100 ~~---~~~v~~~~~~--~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 100 GE---PVEVDWPGLR--GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred ce---eEEecccccC--CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 11 2222211111 1599999999999998833 5777776553 22 011 00110 1224688999999
Q ss_pred cCCCEEEEEecCC
Q 001163 1030 CDSQSIYVAFEEG 1042 (1134)
Q Consensus 1030 ~dg~~l~s~s~Dg 1042 (1134)
+++.+++.+...+
T Consensus 175 ~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 175 DDSTLVVLGRSAG 187 (253)
T ss_pred CCCEEEEEeCCCC
Confidence 9999877665543
No 393
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.52 E-value=0.92 Score=46.77 Aligned_cols=186 Identities=9% Similarity=0.113 Sum_probs=114.7
Q ss_pred CeeEEEEcCCCCeEEEee-CC--eEEEEEccCCeEEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEE
Q 001163 845 AVPCFALSKNDSYVMSAS-GG--KISLFNMMTFKTMTTFMPPP-PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK 920 (1134)
Q Consensus 845 ~v~~v~~s~dg~~la~~s-dg--~i~lwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~ 920 (1134)
-...+.|..+|.++-+.+ -| .|+.+|+.+++......-.. ----.++.. ++++....-.++...+||..+-+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence 345788878888777766 44 59999999999876654322 223455555 4567777778899999999999988
Q ss_pred EeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eece
Q 001163 921 TKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQ 999 (1134)
Q Consensus 921 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~ 999 (1134)
.++.- .+.-+.++ .|++.|+.+.....+.++|.++-+... .+++.....+ -..+.-+.+- +|...|=- ....
T Consensus 124 ~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~--~i~V~~~g~p-v~~LNELE~i-~G~IyANVW~td~ 196 (264)
T PF05096_consen 124 GTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVR--TIQVTDNGRP-VSNLNELEYI-NGKIYANVWQTDR 196 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEE--EEE-EETTEE----EEEEEEE-TTEEEEEETTSSE
T ss_pred EEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEE--EEEEEECCEE-CCCcEeEEEE-cCEEEEEeCCCCe
Confidence 88763 45667877 467777777777789999988755433 3333222111 1235556665 45433323 5567
Q ss_pred EEEEeCCCcccceeeccC----------CC---ccCEEEEEEccCCCEEEEEe
Q 001163 1000 IAIYEAPKLECLKQFVPR----------EA---SGPITHATYSCDSQSIYVAF 1039 (1134)
Q Consensus 1000 i~iwd~~~~~~~~~~~~~----------~h---~~~v~~~~~s~dg~~l~s~s 1039 (1134)
|...|..+|+....+... .+ ..-...||+.|++..|+..+
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 778888888877655310 01 34578999988777665544
No 394
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.48 E-value=0.91 Score=50.14 Aligned_cols=242 Identities=14% Similarity=0.103 Sum_probs=117.7
Q ss_pred eeEEEEcCCCCeEEEeeCCeEEEEEccCCeE---EEEec----CCCCCeEEEEEcCC---CCcEEEEEeCC--------C
Q 001163 846 VPCFALSKNDSYVMSASGGKISLFNMMTFKT---MTTFM----PPPPAATFLAFHPQ---DNNIIAIGMED--------S 907 (1134)
Q Consensus 846 v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~---~~~~~----~~~~~v~~l~~sp~---~~~~la~g~~d--------g 907 (1134)
.+.|+|.|||+++++-..|.|++++ ..+.. +..+. ........++++|+ ++.+.++.+.. .
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 5789999999988876799999999 34443 33331 23356899999993 24444433321 1
Q ss_pred cEEEEEcccc-------eEE-EeccC---ccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCC--
Q 001163 908 SIQIYNVRVD-------EVK-TKLKG---HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRT-- 974 (1134)
Q Consensus 908 ~i~iwd~~~~-------~~~-~~l~~---h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-- 974 (1134)
.|.-|.+..+ +.+ ..+.. .......|+|.|||.+.++.+..+. --...........++.+.....
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGCSTTSSTTEEEEEETTSSB-
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--cccccccccccceEEEecccCcCC
Confidence 3444444332 111 12222 1223456999999988887765443 0000000000111222111100
Q ss_pred -----------C------CCCCceEEEEcCC-CCEEEE--EeeceEEEEeCCCcccc-----------------------
Q 001163 975 -----------A------SALADTRVQFHLD-QTHLLA--VHETQIAIYEAPKLECL----------------------- 1011 (1134)
Q Consensus 975 -----------~------~~~~v~~l~fs~d-g~~l~~--~~d~~i~iwd~~~~~~~----------------------- 1011 (1134)
. ..-....++|.|. |.+.++ +.+..=.|..+..|..-
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 0 0012467899999 776665 33333333333322100
Q ss_pred ----eeeccCCCccCEEEEEEcc-------CCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEec
Q 001163 1012 ----KQFVPREASGPITHATYSC-------DSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGN 1080 (1134)
Q Consensus 1012 ----~~~~~~~h~~~v~~~~~s~-------dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 1080 (1134)
..+.. .+...++.+.|-. +|.++++.-..+.|....+.++..+.... .+..+...++..+ ++.
T Consensus 241 ~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~r~~~v--~~~ 314 (331)
T PF07995_consen 241 GFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE---EFLGGFGGRPRDV--AQG 314 (331)
T ss_dssp TS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---EECTTSSS-EEEE--EEE
T ss_pred CcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE---EccccCCCCceEE--EEc
Confidence 00001 2235677777753 45566666656778777776553322211 1112223344444 667
Q ss_pred CCCCCEEEEEecCCcEE
Q 001163 1081 PTDPNQFALGLTDGGVY 1097 (1134)
Q Consensus 1081 p~~~~~l~s~~~Dg~v~ 1097 (1134)
| ||.++++.+.+|.|+
T Consensus 315 p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 315 P-DGALYVSDDSDGKIY 330 (331)
T ss_dssp T-TSEEEEEE-TTTTEE
T ss_pred C-CCeEEEEECCCCeEe
Confidence 8 788888888888864
No 395
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.012 Score=65.80 Aligned_cols=92 Identities=14% Similarity=0.273 Sum_probs=77.7
Q ss_pred CCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeE-EEEEcCCCCcEEEEEeCCCcEEEEEcccceEE
Q 001163 843 EDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAAT-FLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK 920 (1134)
Q Consensus 843 ~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~-~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~ 920 (1134)
...+..+.|+|.-.++|.+. +|.|-+..+. .+.+.++..+...++ +++|.| ||++||+|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 45678899999999999998 8999999987 888899887777777 999999 8999999999999999999998776
Q ss_pred Eec-cCccCceEEEEEe
Q 001163 921 TKL-KGHQKRITGLAFS 936 (1134)
Q Consensus 921 ~~l-~~h~~~V~~l~~s 936 (1134)
... ..-...|.++.|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 552 2244667777776
No 396
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.46 E-value=0.37 Score=50.76 Aligned_cols=145 Identities=14% Similarity=0.064 Sum_probs=90.7
Q ss_pred CCeeEEEEcCCCCeEEEee--CCe--EEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE-cccce
Q 001163 844 DAVPCFALSKNDSYVMSAS--GGK--ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYN-VRVDE 918 (1134)
Q Consensus 844 ~~v~~v~~s~dg~~la~~s--dg~--i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd-~~~~~ 918 (1134)
..+...++++||+.+|... ++. ++++.. +....... ....++...|++ ++.+.+....+...+++. ..+++
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence 3688999999999887765 444 555544 33333322 234788899999 688887777777777774 33332
Q ss_pred EE-Eec--cCccCceEEEEEeeCCCEEEEEe---CCCcEEEEECCCCccc-cc---eeeeecCCCCCCCCCceEEEEcCC
Q 001163 919 VK-TKL--KGHQKRITGLAFSNTLNVLVSSG---ADSQLCVWSTDGWEKQ-AS---KFLTIPNGRTASALADTRVQFHLD 988 (1134)
Q Consensus 919 ~~-~~l--~~h~~~V~~l~~s~d~~~l~s~s---~Dg~i~iwd~~~~~~~-~~---~~~~~~~~~~~~~~~v~~l~fs~d 988 (1134)
.. ..+ ..-.+.|+++.+||||..+|... .++.|.+=-+...... .. ....+... ....+..+.|.++
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~---~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP---LLSDVTDVAWSDD 176 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc---ccCcceeeeecCC
Confidence 21 111 11122899999999999988665 3567777665543322 11 11111111 1146899999999
Q ss_pred CCEEEEE
Q 001163 989 QTHLLAV 995 (1134)
Q Consensus 989 g~~l~~~ 995 (1134)
+.+++.+
T Consensus 177 ~~L~V~~ 183 (253)
T PF10647_consen 177 STLVVLG 183 (253)
T ss_pred CEEEEEe
Confidence 9988874
No 397
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.45 E-value=0.27 Score=58.32 Aligned_cols=227 Identities=13% Similarity=0.017 Sum_probs=122.3
Q ss_pred cCCCCEEEEEeCCC------EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC------CeEEEEEC
Q 001163 427 SPDGTLFGVAYSKH------IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED------RVIKVWDA 494 (1134)
Q Consensus 427 spd~~~las~s~dg------~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d------~~i~iwd~ 494 (1134)
+..+.+++.|+.++ .+..+|..++.-.. ...+. +...-.+++.. ++. +.++||.| .++..||.
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~-~~~--lYv~GG~~~~~~~l~~ve~YD~ 356 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVL-NGK--LYVVGGYDSGSDRLSSVERYDP 356 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEE-CCE--EEEEccccCCCcccceEEEecC
Confidence 33456667777663 57888888774322 22233 22223445554 344 78888888 36778888
Q ss_pred CCCceeE--EecCCCcCEEEEeccccCCccEEEEecCCCc-----EEEEecCCCCceeeecCCCCCeeEEEECcCCCEEE
Q 001163 495 VTGTKQY--IFEGHESPVYSICPHHKENIQFIFSTATDGK-----IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF 567 (1134)
Q Consensus 495 ~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~-----i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 567 (1134)
.+++-.. .+........... -+|.+.+.|+.||. |-.||..+.+-...-......-..-...-+|+..+
T Consensus 357 ~~~~W~~~a~M~~~R~~~~v~~----l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi 432 (571)
T KOG4441|consen 357 RTNQWTPVAPMNTKRSDFGVAV----LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYI 432 (571)
T ss_pred CCCceeccCCccCccccceeEE----ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEE
Confidence 7776433 1221111111111 23477888888865 66777665443332222221111222234677777
Q ss_pred EEecCCCCC--eEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCCceeEEEecCC
Q 001163 568 SCGTNKEGE--SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF-----MIKFWDMDNVNLLASIDADG 640 (1134)
Q Consensus 568 ~~~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~ 640 (1134)
+||.++..+ ..+..||..+.+....-.......-..++. -++...+.||.|+ +|..||..+.+....-....
T Consensus 433 ~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 433 IGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred EcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 777665432 568899998886655433332212222332 3566777777665 37788888877655432221
Q ss_pred CCCCcceEEEcCCCcEEEEEECCCc
Q 001163 641 GLQASPCIRFNKEGILLAVSTNDNG 665 (1134)
Q Consensus 641 ~~~~v~~v~~sp~~~~l~~~~~dg~ 665 (1134)
....+..+.+ ++...++|+.||.
T Consensus 512 ~rs~~g~~~~--~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 512 PRSAVGVVVL--GGKLYAVGGFDGN 534 (571)
T ss_pred ccccccEEEE--CCEEEEEecccCc
Confidence 1222222222 5677788887763
No 398
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.30 E-value=0.6 Score=46.01 Aligned_cols=98 Identities=11% Similarity=0.145 Sum_probs=61.4
Q ss_pred EEEEecCCceeeeecc-CCeEEeeecCC--CCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCe
Q 001163 781 RLIYTNSGLAILALAS-NAVHKLWKWPR--NERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY 857 (1134)
Q Consensus 781 ~l~~spdg~~l~~~~~-dg~i~vw~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~ 857 (1134)
.++|+.+.+.+....+ +-.|.-||.+. +..+ ..-.++|++..+.....++ ..+++..+|.+
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~s--------nr~~i~dlrk~~~~e~~~P--------DGm~ID~eG~L 225 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLS--------NRKVIFDLRKSQPFESLEP--------DGMTIDTEGNL 225 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCccccc--------CcceeEEeccCCCcCCCCC--------CcceEccCCcE
Confidence 4566655555544433 55565566432 2111 1113445554433332222 24556678887
Q ss_pred EEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcC
Q 001163 858 VMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHP 894 (1134)
Q Consensus 858 la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp 894 (1134)
.++.. .++|.-.|..+|+.+.+++-+...|+|++|--
T Consensus 226 ~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 226 YVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 76665 78999999999999999998999999999964
No 399
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.20 E-value=0.012 Score=40.26 Aligned_cols=39 Identities=23% Similarity=0.401 Sum_probs=33.6
Q ss_pred CeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 001163 874 FKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYN 913 (1134)
Q Consensus 874 ~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd 913 (1134)
+++...+..|...|.++.|.+ ++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 345666777888999999999 778999999999999996
No 400
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=0.092 Score=57.70 Aligned_cols=144 Identities=11% Similarity=0.088 Sum_probs=98.1
Q ss_pred EEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCE-------EEEEeCCCcEEEEECCCCccccceeeeecC
Q 001163 899 IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNV-------LVSSGADSQLCVWSTDGWEKQASKFLTIPN 971 (1134)
Q Consensus 899 ~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~-------l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 971 (1134)
++..+.....++-.|+..|+.+..+.-|.. |.-+.+.|+.+. -+.|-.|..|.-||..-... ..+.+.+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~---~kl~~~q 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK---NKLAVVQ 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc---ceeeeee
Confidence 444555667788899999999999998877 888888887542 22345577799999764221 1233333
Q ss_pred CCCCCC-CCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeec
Q 001163 972 GRTASA-LADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTA 1049 (1134)
Q Consensus 972 ~~~~~~-~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~ 1049 (1134)
++.-.. ....|.+-..+|..++.+.+|.|++||- .+....+.. .+-..+|..+..+.||++|+..+ +.++.+-++
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAl-PgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTAL-PGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcc-cccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 332211 2345666666776666689999999998 555444443 25678999999999999987554 667777664
No 401
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=96.03 E-value=5.4 Score=48.44 Aligned_cols=104 Identities=12% Similarity=0.133 Sum_probs=65.5
Q ss_pred EEEcCCCCeEEEeeCCeEEEEEccCCeEEEEec--CCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE--EcccceEEEecc
Q 001163 849 FALSKNDSYVMSASGGKISLFNMMTFKTMTTFM--PPPPAATFLAFHPQDNNIIAIGMEDSSIQIY--NVRVDEVKTKLK 924 (1134)
Q Consensus 849 v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~la~g~~dg~i~iw--d~~~~~~~~~l~ 924 (1134)
.|+.|...++.+|-...+++||+...++++... .....|+.+.+. +.++++|+..-.+..+ +-...+.+ .+-
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l~-~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQLI-VFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeEE-EEe
Confidence 456677778888889999999998777666533 234567888874 4678888766666554 43333433 332
Q ss_pred C--ccCceEEEEEeeCCCEEEEEeCCCcEEEEECC
Q 001163 925 G--HQKRITGLAFSNTLNVLVSSGADSQLCVWSTD 957 (1134)
Q Consensus 925 ~--h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~ 957 (1134)
. -...|+++.+- |...+|.+..=|.+.+-.+.
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 2 12335665554 55567777666666665544
No 402
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.02 E-value=0.26 Score=42.97 Aligned_cols=102 Identities=16% Similarity=0.150 Sum_probs=65.2
Q ss_pred eeEEEE---cCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001163 359 VKSMDF---HPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (1134)
Q Consensus 359 V~~v~f---sp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las 435 (1134)
|+++++ .-||..-|.+||.|..|+||+-+. .+.. ..-.+.|++++-... ..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~E--------------------i~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAE--------------------ITETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEE--------------------EecccceEEEEEcCC-CEEEE
Confidence 445554 446666678999999999998653 2221 124567888887766 67899
Q ss_pred EeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEec---CCCceEEEEEeCCCeEE
Q 001163 436 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY---PNKQLSVVTCGEDRVIK 490 (1134)
Q Consensus 436 ~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~---~~~~~~l~s~s~d~~i~ 490 (1134)
+-.+|+|-+|+-... +. ..+ -+..++++++.. ||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~R--lW---RiK-SK~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQR--LW---RIK-SKNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcce--ee---eec-cCCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 999999999976331 22 122 222356665543 3333 578888787763
No 403
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.02 E-value=5.8 Score=48.69 Aligned_cols=200 Identities=13% Similarity=0.144 Sum_probs=114.6
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEecCCCcC--------EEEEecccc--------------CCccEEEEecCCCcEEEE
Q 001163 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESP--------VYSICPHHK--------------ENIQFIFSTATDGKIKAW 536 (1134)
Q Consensus 479 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~--------v~~~~~~~~--------------~~~~~l~s~s~dg~i~vw 536 (1134)
.++.++.++.|.-.|..+|+.+.++...... ...+.+... ..+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4667777888888888888888776532211 111222211 123478888889999999
Q ss_pred ecCCCCceeeecCCCC--------Ce----eEEEECc--CCCEEEEEecCCC------CCeEEEEEeCCCCeeEEEecCC
Q 001163 537 LYDNLGSRVDYDAPGH--------SS----TMMAYSA--DGARLFSCGTNKE------GESYLVEWNESEGAVKRTYHGL 596 (1134)
Q Consensus 537 d~~~~~~~~~~~~~~~--------~v----~~~~~s~--~~~~l~~~~~~~~------~~~~i~~wd~~~~~~~~~~~~~ 596 (1134)
|.++++....+...+. .. ..+.-.| .+..+++++...+ ..+.|+-+|.++|+.+..+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 9888877765432110 00 0111112 1334555543222 2567999999999998877531
Q ss_pred C--------C--------Cce-EEEEEcCCCCEEEEEe------------------CCCeEEEEEcCCCceeEEEecCCC
Q 001163 597 G--------K--------RSV-GVVQFDTTKNRFLAAG------------------DEFMIKFWDMDNVNLLASIDADGG 641 (1134)
Q Consensus 597 ~--------~--------~~v-~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~ 641 (1134)
. . ..+ ...++.++...++.+. ..+.|.-.|.++|+..-.++...|
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 0 0 001 2244555554544422 234566778888887776654211
Q ss_pred C-------CCcceEEEcC-CCc---EEEEEECCCcEEEEEccCCceeE
Q 001163 642 L-------QASPCIRFNK-EGI---LLAVSTNDNGIKILANADGIRLL 678 (1134)
Q Consensus 642 ~-------~~v~~v~~sp-~~~---~l~~~~~dg~i~iw~~~~~~~~~ 678 (1134)
. ....-+.+.. +|+ .++.++.+|.+.++|-.+++.+.
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 0 0111122322 553 78899999999999999995443
No 404
>PHA02713 hypothetical protein; Provisional
Probab=96.00 E-value=0.64 Score=55.41 Aligned_cols=222 Identities=8% Similarity=0.002 Sum_probs=106.1
Q ss_pred EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC------CeEEEEECCCCceeE--EecCCCcCEEE
Q 001163 441 IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED------RVIKVWDAVTGTKQY--IFEGHESPVYS 512 (1134)
Q Consensus 441 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d------~~i~iwd~~~~~~~~--~~~~h~~~v~~ 512 (1134)
.+..||..+++-.. ...+...... .+++. -++. +++.||.+ ..+..||..+..... .+.........
T Consensus 273 ~v~~yd~~~~~W~~-l~~mp~~r~~-~~~a~-l~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~ 347 (557)
T PHA02713 273 CILVYNINTMEYSV-ISTIPNHIIN-YASAI-VDNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSL 347 (557)
T ss_pred CEEEEeCCCCeEEE-CCCCCccccc-eEEEE-ECCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeE
Confidence 46778887764221 1122211111 12222 2455 56667653 357788877765322 11111111111
Q ss_pred EeccccCCccEEEEecCCC-----cEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCC------------
Q 001163 513 ICPHHKENIQFIFSTATDG-----KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG------------ 575 (1134)
Q Consensus 513 ~~~~~~~~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~------------ 575 (1134)
+. -+|.+.+.|+.++ ++..||..+..-...-..........+..-+|+..+.||.++..
T Consensus 348 ~~----~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~ 423 (557)
T PHA02713 348 AV----IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSID 423 (557)
T ss_pred EE----ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccc
Confidence 21 2336777777654 37788877543222111111111111122367777776654211
Q ss_pred -------CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC------CeEEEEEcCC-CceeEEEecCCC
Q 001163 576 -------ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE------FMIKFWDMDN-VNLLASIDADGG 641 (1134)
Q Consensus 576 -------~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~~ 641 (1134)
...+..||+.+.+....-..... ........-++...+.||.+ ..+..||..+ .+....-.....
T Consensus 424 ~~~~~~~~~~ve~YDP~td~W~~v~~m~~~-r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~ 502 (557)
T PHA02713 424 MEEDTHSSNKVIRYDTVNNIWETLPNFWTG-TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR 502 (557)
T ss_pred ccccccccceEEEECCCCCeEeecCCCCcc-cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc
Confidence 23588899887765433222111 11111122345666667643 2467899887 454332222111
Q ss_pred CCCcceEEEcCCCcEEEEEECCC--cEEEEEccCC
Q 001163 642 LQASPCIRFNKEGILLAVSTNDN--GIKILANADG 674 (1134)
Q Consensus 642 ~~~v~~v~~sp~~~~l~~~~~dg--~i~iw~~~~~ 674 (1134)
......+++ ++...++|+.+| .+..||..++
T Consensus 503 r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 503 LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred cccceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence 112222222 678888999888 6666666654
No 405
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.99 E-value=0.9 Score=46.83 Aligned_cols=196 Identities=15% Similarity=0.168 Sum_probs=116.3
Q ss_pred cccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCc-ccccCCCCCCCCCCeeEEEEc
Q 001163 774 LTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGI-LMTNDISDTNPEDAVPCFALS 852 (1134)
Q Consensus 774 ~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~h~~~v~~v~~s 852 (1134)
+....+.+++|+|+.+.|++......-.||= + ..|. +..+++.+ -.....+.+.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVEl---------------------t-~~GdlirtiPL~g---~~DpE~Ieyi 137 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVEL---------------------T-KEGDLIRTIPLTG---FSDPETIEYI 137 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEE---------------------e-cCCceEEEecccc---cCChhHeEEe
Confidence 3455699999999999999988876655541 1 2232 22333333 2334567888
Q ss_pred CCCCeEEEee-CCeEEEEEccCCeEEEEe----------cCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce-E-
Q 001163 853 KNDSYVMSAS-GGKISLFNMMTFKTMTTF----------MPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE-V- 919 (1134)
Q Consensus 853 ~dg~~la~~s-dg~i~lwd~~~~~~~~~~----------~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~-~- 919 (1134)
.+|+++++-. +..+.++.+.....+..+ ...+...-.++|.| .++.|..+-+-.=+.||.+..+. .
T Consensus 138 g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l 216 (316)
T COG3204 138 GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSL 216 (316)
T ss_pred cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCccc
Confidence 8888888776 788888877544222221 11245678899999 66667777777767777765332 1
Q ss_pred -EEeccCcc-------CceEEEEEee-CCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCC---CCCceEEEEcC
Q 001163 920 -KTKLKGHQ-------KRITGLAFSN-TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTAS---ALADTRVQFHL 987 (1134)
Q Consensus 920 -~~~l~~h~-------~~V~~l~~s~-d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~v~~l~fs~ 987 (1134)
+.....+. ..|.++.|.+ .+.+|+-+.+++.+.-.|....-. ..+....|.... --....++..+
T Consensus 217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~---~~lsL~~g~~gL~~dipqaEGiamDd 293 (316)
T COG3204 217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVI---ELLSLTKGNHGLSSDIPQAEGIAMDD 293 (316)
T ss_pred ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCee---eeEEeccCCCCCcccCCCcceeEECC
Confidence 11111122 3456677774 456777777788777777765321 122222222211 12345678888
Q ss_pred CCCEEEEEeec
Q 001163 988 DQTHLLAVHET 998 (1134)
Q Consensus 988 dg~~l~~~~d~ 998 (1134)
+|...+++.-+
T Consensus 294 ~g~lYIvSEPn 304 (316)
T COG3204 294 DGNLYIVSEPN 304 (316)
T ss_pred CCCEEEEecCC
Confidence 88766665433
No 406
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.94 E-value=3.5 Score=45.51 Aligned_cols=58 Identities=17% Similarity=0.083 Sum_probs=35.7
Q ss_pred CCEEEEEeCCCeEEEEEcCCCceeEEE-ec-CCCCCCcceEEEcCCCcEEEEEECCCcEE
Q 001163 610 KNRFLAAGDEFMIKFWDMDNVNLLASI-DA-DGGLQASPCIRFNKEGILLAVSTNDNGIK 667 (1134)
Q Consensus 610 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~-~~~~~~v~~v~~sp~~~~l~~~~~dg~i~ 667 (1134)
+.++++.-..+.|....+..+..+... .. ......+..+++.|||.++++...+|.|.
T Consensus 271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 345555546678888887655333222 21 12223688999999999988888888764
No 407
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.92 E-value=0.1 Score=62.38 Aligned_cols=105 Identities=19% Similarity=0.209 Sum_probs=78.5
Q ss_pred CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCc
Q 001163 429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES 508 (1134)
Q Consensus 429 d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 508 (1134)
.+..++.|+..|.|-..|+.+. ++....-..-.++|++++|+.+|+ .++.|-.+|.|.+||+.+++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 5668899999999998888764 222111223457899999999999 788999999999999999999999988887
Q ss_pred CEEEEeccc-cCCccEEEEecCCCcEEEEecC
Q 001163 509 PVYSICPHH-KENIQFIFSTATDGKIKAWLYD 539 (1134)
Q Consensus 509 ~v~~~~~~~-~~~~~~l~s~s~dg~i~vwd~~ 539 (1134)
+..++-+.. ..++..++++...|. +|.+.
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 777664332 233356888877776 56543
No 408
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.82 E-value=0.16 Score=57.02 Aligned_cols=158 Identities=13% Similarity=0.153 Sum_probs=91.2
Q ss_pred CCCeEEEEEcCCCCcEEEEEe--CCCcEEEEEcccceEEEeccCccCceEEEEEeeC----CCEEEEEeCCCcEEEEECC
Q 001163 884 PPAATFLAFHPQDNNIIAIGM--EDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNT----LNVLVSSGADSQLCVWSTD 957 (1134)
Q Consensus 884 ~~~v~~l~~sp~~~~~la~g~--~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d----~~~l~s~s~Dg~i~iwd~~ 957 (1134)
-.++..++|.. +.+.+.+.- .+|.++.=| .+.+..| ..|..+.|+|- -..|...-....|.+|.+.
T Consensus 19 iHPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 35688899984 444444432 233333222 1233333 34889999885 3345556677889999986
Q ss_pred C--CccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceE-EEEeCCCc--ccceeeccCCCccCEEEEEEccCC
Q 001163 958 G--WEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQI-AIYEAPKL--ECLKQFVPREASGPITHATYSCDS 1032 (1134)
Q Consensus 958 ~--~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i-~iwd~~~~--~~~~~~~~~~h~~~v~~~~~s~dg 1032 (1134)
- .+..+...-+..+-..+...-...+.|+|....|++-....+ .++++... .....+. -.+.|-|.||..||
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~---~~G~IhCACWT~DG 167 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK---TSGLIHCACWTKDG 167 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc---CCceEEEEEecCcC
Confidence 3 222222333333222221123466889999999988333333 44455433 2333332 36789999999999
Q ss_pred CEEEEEecC-CcEEEeecCCC
Q 001163 1033 QSIYVAFEE-GSVGVLTASTL 1052 (1134)
Q Consensus 1033 ~~l~s~s~D-g~i~vwd~~~~ 1052 (1134)
+.|+++-.. =.-+|||-...
T Consensus 168 ~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CEEEEEeCCeEEEEEecCchh
Confidence 997765433 34678985443
No 409
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.71 E-value=4.8 Score=45.30 Aligned_cols=278 Identities=11% Similarity=0.146 Sum_probs=142.5
Q ss_pred cCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC-----CCCEEEEEeCC
Q 001163 365 HPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-----DGTLFGVAYSK 439 (1134)
Q Consensus 365 sp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-----d~~~las~s~d 439 (1134)
+++++..+++||..|.++||+...++.... .+- +-..-+.+|..++.-+ +...||+ =.-
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~-~ll--------------lE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP 96 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPE-DLL--------------LETQLKDPILQVECGKFVSGSEDLQLAV-LHP 96 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCc-cEE--------------EEEecCCcEEEEEeccccCCCCcceEEE-ecC
Confidence 344555778999999999999965442111 000 0122345777776542 2334554 445
Q ss_pred CEEEEEEccCC-------ceeeeeeeeecCCCC--EEEEEEec----CCCceEEEEEeCCCeEEEEECCCCceeEEecC-
Q 001163 440 HIVHLYTYHGG-------DELRNHLEIEAHVGS--VNDLAFSY----PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG- 505 (1134)
Q Consensus 440 g~v~iwd~~~~-------~~~~~~~~l~~h~~~--V~~v~~s~----~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~- 505 (1134)
..+.||.+... .... ...+..|.-. ...++.-| .++. ++..-+.||.+.+++-+.-...+.+.+
T Consensus 97 ~kl~vY~v~~~~g~~~~g~~~~-L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~ 174 (418)
T PF14727_consen 97 RKLSVYSVSLVDGTVEHGNQYQ-LELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDF 174 (418)
T ss_pred CEEEEEEEEecCCCcccCcEEE-EEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCC
Confidence 56888877321 1111 1122334322 22222222 2233 788899999999999554433333433
Q ss_pred -CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCc-----------------------eeeecCCCCC---eeEEE
Q 001163 506 -HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-----------------------RVDYDAPGHS---STMMA 558 (1134)
Q Consensus 506 -h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-----------------------~~~~~~~~~~---v~~~~ 558 (1134)
..+++ +|.+.. +.+++++.+..+..|....... .+.+.. +.. +..+.
T Consensus 175 llPgPl---~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~ 248 (418)
T PF14727_consen 175 LLPGPL---CYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVR 248 (418)
T ss_pred CCCcCe---EEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEE
Confidence 33444 444444 5688888888888886531100 011111 112 23333
Q ss_pred ECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcC----CC---CEEEEEeCCCeEEEEEcCCCc
Q 001163 559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT----TK---NRFLAAGDEFMIKFWDMDNVN 631 (1134)
Q Consensus 559 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~----~~---~~l~~~~~dg~i~iwd~~~~~ 631 (1134)
++.....+++-+ +..+.+.+. +|......+-.-. +.....|.. ++ ..++.++.++++.||.-.+
T Consensus 249 ~~~~~~~IvvLg-----er~Lf~l~~-~G~l~~~krLd~~-p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~-- 319 (418)
T PF14727_consen 249 FSSSESDIVVLG-----ERSLFCLKD-NGSLRFQKRLDYN-PSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT-- 319 (418)
T ss_pred cCCCCceEEEEe-----cceEEEEcC-CCeEEEEEecCCc-eeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--
Confidence 333333444443 334777665 3544333322111 222222211 22 2488888999999986433
Q ss_pred eeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCc
Q 001163 632 LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGI 675 (1134)
Q Consensus 632 ~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 675 (1134)
++..-......-.+....|..-..+|++-+.+|.+.+--+-+..
T Consensus 320 L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 320 LVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred EEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 33222221111112222233345688899999999998777663
No 410
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.66 E-value=1.4 Score=52.31 Aligned_cols=235 Identities=12% Similarity=0.090 Sum_probs=128.1
Q ss_pred CCCCeEEEee-C------CeEEEEEccCCeEEEEecC-CCCCeEEEEEcCCCCcEEEEEeCC-C-----cEEEEEcccce
Q 001163 853 KNDSYVMSAS-G------GKISLFNMMTFKTMTTFMP-PPPAATFLAFHPQDNNIIAIGMED-S-----SIQIYNVRVDE 918 (1134)
Q Consensus 853 ~dg~~la~~s-d------g~i~lwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~la~g~~d-g-----~i~iwd~~~~~ 918 (1134)
..+.+++.|+ . ..+..+|..+++-.....- ....-.++++. ++.+.++|+.| | ++..||..+++
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 3455666665 4 3488888877633222211 22234455555 56889999999 3 67788887765
Q ss_pred EEE--eccCccCceEEEEEeeCCCEEEEEeCCCc-----EEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCE
Q 001163 919 VKT--KLKGHQKRITGLAFSNTLNVLVSSGADSQ-----LCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTH 991 (1134)
Q Consensus 919 ~~~--~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~ 991 (1134)
-.. .+........ .-.-+|...|.||.||. +..||..+.+ +........ . .-..-.-.-+|+.
T Consensus 361 W~~~a~M~~~R~~~~--v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~---W~~va~m~~-~----r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFG--VAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK---WTPVAPMLT-R----RSGHGVAVLGGKL 430 (571)
T ss_pred eeccCCccCccccce--eEEECCEEEEEeccccccccccEEEecCCCCc---ccccCCCCc-c----eeeeEEEEECCEE
Confidence 322 2222222111 12237888999999974 6777776644 222221111 0 1122223445666
Q ss_pred EEE-Eee------ceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCc-----EEEeecCCCcceeecC
Q 001163 992 LLA-VHE------TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGS-----VGVLTASTLRLRCRIN 1059 (1134)
Q Consensus 992 l~~-~~d------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~-----i~vwd~~~~~~~~~~~ 1059 (1134)
.++ |.+ .++..||..+.+....-... ..+...-.-.-++.+.+.|+.|+. |..||..+.+.... .
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~--~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~ 507 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN--TRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV-A 507 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCceeecCCcc--cccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEc-c
Confidence 666 322 46889998877643322210 111111122347788888887763 77788877765432 1
Q ss_pred CCcccCCCCCCCceeEEEEecCCCCCEEEEEecCC-----cEEEEeCCCCCCCccCCCC
Q 001163 1060 PTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDG-----GVYIIEPLEAEGRWGTSPP 1113 (1134)
Q Consensus 1060 ~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg-----~v~vW~~~~~~~~~~~~~~ 1113 (1134)
... .+ .+.+ .+++. ++.+.++|+.|| +|..||+...+ |...++
T Consensus 508 ~m~-~~---rs~~-g~~~~----~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~ 555 (571)
T KOG4441|consen 508 PMT-SP---RSAV-GVVVL----GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE 555 (571)
T ss_pred cCc-cc---cccc-cEEEE----CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence 110 01 1111 12222 678899999998 47788777655 888655
No 411
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.61 E-value=2 Score=44.32 Aligned_cols=193 Identities=10% Similarity=0.073 Sum_probs=110.8
Q ss_pred ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccc-cCCCCCCCCCCeeEEEEcC
Q 001163 775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMT-NDISDTNPEDAVPCFALSK 853 (1134)
Q Consensus 775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~h~~~v~~v~~s~ 853 (1134)
.......+.|..+|..+-+.+.-|.-.|- .+|+.+|+... ..++ ...--..++...
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~--------------------~~d~~tg~~~~~~~l~---~~~FgEGit~~~ 99 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLR--------------------KVDLETGKVLQSVPLP---PRYFGEGITILG 99 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEE--------------------EEETTTSSEEEEEE-T---TT--EEEEEEET
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEE--------------------EEECCCCcEEEEEECC---ccccceeEEEEC
Confidence 44567888898899888888876643332 22455555432 2222 223334555555
Q ss_pred CCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCcc-----C
Q 001163 854 NDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQ-----K 928 (1134)
Q Consensus 854 dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~-----~ 928 (1134)
|.-+.++--++...+||..+.+.+.++.- .+.-..++. +++.|+.......++.+|..+-+...++.... .
T Consensus 100 d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~ 175 (264)
T PF05096_consen 100 DKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVS 175 (264)
T ss_dssp TEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE--
T ss_pred CEEEEEEecCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECC
Confidence 54455555589999999999999999863 355566663 55566666666789999988776665554321 2
Q ss_pred ceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeee-------cCCCCCCCCCceEEEEcCCCCEEEEE
Q 001163 929 RITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTI-------PNGRTASALADTRVQFHLDQTHLLAV 995 (1134)
Q Consensus 929 ~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~v~~l~fs~dg~~l~~~ 995 (1134)
.++.+.|- +|...|=.=....|..-|..+|+.....-+.. .....+..+-...+|+.|....+.++
T Consensus 176 ~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT 248 (264)
T PF05096_consen 176 NLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT 248 (264)
T ss_dssp -EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred CcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence 45566665 67666655556667777888877443211110 01111112457899998887776664
No 412
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.58 E-value=3.6 Score=46.73 Aligned_cols=126 Identities=16% Similarity=0.333 Sum_probs=76.7
Q ss_pred EeecCCCeeEEEEcCC----CCeEEEEEeCCCcEEEEecCC-----ccceeeeceeeeeccccCccccccccccCCCCEE
Q 001163 352 TLNQGSAVKSMDFHPV----QQILLVVGTNMGDVMLWEVGS-----RERIAVKSFKVWELGACSMPLQASLSSDYTASVN 422 (1134)
Q Consensus 352 ~~~h~~~V~~v~fsp~----g~~lla~gs~dg~v~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 422 (1134)
.++.-..|..+.|+|- -..|||+- ..+.|.||.+.. ++.+...+.. +.+ ++. ---.
T Consensus 52 viGqFEhV~GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL~~s~~e~~K~l~sQtcE---i~e---~~p--------vLpQ 116 (671)
T PF15390_consen 52 VIGQFEHVHGLSWAPPCTADTPALLAVQ-HKKHVTVWQLCPSTTERNKLLMSQTCE---IRE---PFP--------VLPQ 116 (671)
T ss_pred EeeccceeeeeeecCcccCCCCceEEEe-ccceEEEEEeccCccccccceeeeeee---ccC---Ccc--------cCCC
Confidence 3455566999999995 33566664 557899999863 2333222211 110 110 0113
Q ss_pred EEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECC
Q 001163 423 RVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 495 (1134)
Q Consensus 423 ~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~ 495 (1134)
.+.|+|....|++-.....-.+.++...... ....+ .-.+-|.|.+|.+||+++.++.|+ .=.-+|||-.
T Consensus 117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~sr-VkaDi-~~~G~IhCACWT~DG~RLVVAvGS-sLHSyiWd~~ 186 (671)
T PF15390_consen 117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSR-VKADI-KTSGLIHCACWTKDGQRLVVAVGS-SLHSYIWDSA 186 (671)
T ss_pred cccccCCCceEEEEecCceeEeeeeeeCCce-EEEec-cCCceEEEEEecCcCCEEEEEeCC-eEEEEEecCc
Confidence 4789999999988776665566676644321 11233 355679999999999985444444 4466899944
No 413
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.55 E-value=0.045 Score=39.61 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=29.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCc
Q 001163 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD 451 (1134)
Q Consensus 417 h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~ 451 (1134)
....|.+++|+|..++||.|+.+|.|.++.+ +++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 3457999999999999999999999999998 443
No 414
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.53 E-value=0.044 Score=65.29 Aligned_cols=99 Identities=20% Similarity=0.317 Sum_probs=70.1
Q ss_pred EEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCC
Q 001163 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG 450 (1134)
Q Consensus 371 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~ 450 (1134)
.++.|++.|.|...|+...-.... | -..-.++|++++|+.||+.++.|-.+|.|.+||+..+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~-----~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLH-----Q-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhh-----c-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 568888889998888765311000 0 1234579999999999999999999999999999998
Q ss_pred ceeeeeeeeecCCCCEEE---EEEecCCCceEEEEEeCCCeEEEEEC
Q 001163 451 DELRNHLEIEAHVGSVND---LAFSYPNKQLSVVTCGEDRVIKVWDA 494 (1134)
Q Consensus 451 ~~~~~~~~l~~h~~~V~~---v~~s~~~~~~~l~s~s~d~~i~iwd~ 494 (1134)
+.++ .+..|..++++ +.+..++. .++++...|. +|..
T Consensus 163 k~l~---~i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 163 KILK---VITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccee---eeeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEE
Confidence 8776 34445544444 44444555 5778877775 5553
No 415
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.52 E-value=0.037 Score=40.02 Aligned_cols=33 Identities=27% Similarity=0.591 Sum_probs=29.0
Q ss_pred CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCcc
Q 001163 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRE 390 (1134)
Q Consensus 356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~ 390 (1134)
...|.+++|+|... |+|.|+.+|.|.|+.+ +++
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCc
Confidence 45699999999998 8899999999999998 444
No 416
>PRK13684 Ycf48-like protein; Provisional
Probab=95.47 E-value=5.3 Score=44.19 Aligned_cols=158 Identities=9% Similarity=-0.034 Sum_probs=87.8
Q ss_pred cCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCC
Q 001163 927 QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAP 1006 (1134)
Q Consensus 927 ~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~ 1006 (1134)
.+.+.++.+.+++.+++++ ..|.+.. ....+. ..+..+.. +.. ..+..+.+.++++.++++..|.+++=..+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~-s~~~gg-~tW~~~~~--~~~---~~l~~i~~~~~g~~~~vg~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYS-TWEPGQ-TAWTPHQR--NSS---RRLQSMGFQPDGNLWMLARGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEE-EcCCCC-CeEEEeeC--CCc---ccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence 4568899999988666554 4564432 211111 11112221 111 45889999999998888877876543345
Q ss_pred CcccceeeccC--CCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCC
Q 001163 1007 KLECLKQFVPR--EASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDP 1084 (1134)
Q Consensus 1007 ~~~~~~~~~~~--~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~ 1084 (1134)
.|+........ .-...+.++.+.+++..++ ++.+|.|. ...+.|+.-........+ ....+.+ .|.. +
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~----~~~~~~~--~~~~--~ 313 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEV----PSNFYKI--VFLD--P 313 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCC----CcceEEE--EEeC--C
Confidence 55443322211 1134578899999887655 45677555 455555543333211111 1234444 3333 3
Q ss_pred CEEEEEecCCcEEEEeCC
Q 001163 1085 NQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus 1085 ~~l~s~~~Dg~v~vW~~~ 1102 (1134)
+....++..|.|.-|+-.
T Consensus 314 ~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 314 EKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred CceEEECCCceEEEecCC
Confidence 455668888998888643
No 417
>PRK13684 Ycf48-like protein; Provisional
Probab=95.42 E-value=5.5 Score=44.05 Aligned_cols=156 Identities=10% Similarity=0.059 Sum_probs=90.1
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCcEEE-EEcccceEEEe-ccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCcc
Q 001163 884 PPAATFLAFHPQDNNIIAIGMEDSSIQI-YNVRVDEVKTK-LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEK 961 (1134)
Q Consensus 884 ~~~v~~l~~sp~~~~~la~g~~dg~i~i-wd~~~~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~ 961 (1134)
.+.+..+.+.| ++.+++++. .|.+.. ++ ..++.-.. -..-...++++.+.++++.++.+ ..|.+++=+.+.++.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45688999999 776666554 454443 22 22221111 22334578899999998876654 567654323343331
Q ss_pred ccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeecc-CCCccCEEEEEEccCCCEEEEEec
Q 001163 962 QASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVP-REASGPITHATYSCDSQSIYVAFE 1040 (1134)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~s~dg~~l~s~s~ 1040 (1134)
+.....+.... ...+..+.+.+++..++++.+|.+. .....++....... ..-......+.|..+++.++ .+.
T Consensus 248 --W~~~~~~~~~~--~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~ 321 (334)
T PRK13684 248 --WSKPIIPEITN--GYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQ 321 (334)
T ss_pred --cccccCCcccc--ccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECC
Confidence 11111111111 1347789999999988888887665 34555555444321 11134677888877776655 556
Q ss_pred CCcEEEeec
Q 001163 1041 EGSVGVLTA 1049 (1134)
Q Consensus 1041 Dg~i~vwd~ 1049 (1134)
.|.|..|+-
T Consensus 322 ~G~il~~~~ 330 (334)
T PRK13684 322 RGVLLRYVG 330 (334)
T ss_pred CceEEEecC
Confidence 788887763
No 418
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.38 E-value=4.8 Score=43.17 Aligned_cols=151 Identities=17% Similarity=0.212 Sum_probs=81.8
Q ss_pred CCCCeeEEEEcCCCCeEEEeeCCe-EEEEEccC--CeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEc-ccc
Q 001163 842 PEDAVPCFALSKNDSYVMSASGGK-ISLFNMMT--FKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNV-RVD 917 (1134)
Q Consensus 842 h~~~v~~v~~s~dg~~la~~sdg~-i~lwd~~~--~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~-~~~ 917 (1134)
..+.+..+..++||+++++++.|. ..-||-.. .++... .....|..+.|.| ++.+.+++ ..|.|+.=+. ...
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r--~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR--NSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEcc--CccceehhceecC-CCCEEEEe-CCcEEEEccCCCCc
Confidence 346788889999999999999665 55777532 333332 2457899999999 77666644 8888888772 222
Q ss_pred eEEEe----ccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEE
Q 001163 918 EVKTK----LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL 993 (1134)
Q Consensus 918 ~~~~~----l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~ 993 (1134)
+.-.. ...-.-.+..++|.+++...|+|+ .|++ +.+.+.|+. +.......... ..+..+.|.++.+-++
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGkt--W~~~~~~~~~~---~n~~~i~f~~~~~gf~ 291 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKT--WQKDRVGENVP---SNLYRIVFVNPDKGFV 291 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS---EE-GGGTTSS---S---EEEEEETTEEEE
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCcc--ceECccccCCC---CceEEEEEcCCCceEE
Confidence 22111 111223478999998887777665 4533 345555542 12222111111 3478899988888888
Q ss_pred EEeeceEEEE
Q 001163 994 AVHETQIAIY 1003 (1134)
Q Consensus 994 ~~~d~~i~iw 1003 (1134)
.+.+|.|.-|
T Consensus 292 lG~~G~ll~~ 301 (302)
T PF14870_consen 292 LGQDGVLLRY 301 (302)
T ss_dssp E-STTEEEEE
T ss_pred ECCCcEEEEe
Confidence 8999887655
No 419
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.32 E-value=0.047 Score=53.60 Aligned_cols=104 Identities=15% Similarity=0.211 Sum_probs=72.0
Q ss_pred CCeEEEee-CCeEEEEEccCC-eEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCcc-CceE
Q 001163 855 DSYVMSAS-GGKISLFNMMTF-KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQ-KRIT 931 (1134)
Q Consensus 855 g~~la~~s-dg~i~lwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~-~~V~ 931 (1134)
+.-+++|. +|.|++|+..-. .....+..-...|.++.-.-+++.+..++..||.|+.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 34555665 999999987521 11111222223344433333356689999999999999999999888888888 6677
Q ss_pred EEEEeeCCCEEEEE--eCCCcEEEEECCC
Q 001163 932 GLAFSNTLNVLVSS--GADSQLCVWSTDG 958 (1134)
Q Consensus 932 ~l~~s~d~~~l~s~--s~Dg~i~iwd~~~ 958 (1134)
.+..+..+..++++ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 77777777788887 8888888888765
No 420
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.26 E-value=1.6 Score=48.08 Aligned_cols=190 Identities=16% Similarity=0.184 Sum_probs=94.8
Q ss_pred EEEcCCCCeEEEee---C----CeEEEEEccCCeEEEEecCCCC---CeEEEEEcCCCCcEEEEEeC-------------
Q 001163 849 FALSKNDSYVMSAS---G----GKISLFNMMTFKTMTTFMPPPP---AATFLAFHPQDNNIIAIGME------------- 905 (1134)
Q Consensus 849 v~~s~dg~~la~~s---d----g~i~lwd~~~~~~~~~~~~~~~---~v~~l~~sp~~~~~la~g~~------------- 905 (1134)
+-.-|+|.+++++- + |.+.+.|-++.+.......... --..+-|.| ..+.+++...
T Consensus 135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~ 213 (461)
T PF05694_consen 135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPE 213 (461)
T ss_dssp EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TT
T ss_pred eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChh
Confidence 34447898888762 2 4588999998888887764332 245567777 6666666542
Q ss_pred -------CCcEEEEEcccceEEEeccCcc--CceEEEEEeeC--CCE-EEEEeCCCcEEEEEC-CCCccccceeeeecCC
Q 001163 906 -------DSSIQIYNVRVDEVKTKLKGHQ--KRITGLAFSNT--LNV-LVSSGADSQLCVWST-DGWEKQASKFLTIPNG 972 (1134)
Q Consensus 906 -------dg~i~iwd~~~~~~~~~l~~h~--~~V~~l~~s~d--~~~-l~s~s~Dg~i~iwd~-~~~~~~~~~~~~~~~~ 972 (1134)
..++.+||+.+.+.++++.--. .....|.|..+ ..+ ++.+.-.++|..|-- +.++-...+++.++..
T Consensus 214 d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~ 293 (461)
T PF05694_consen 214 DLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK 293 (461)
T ss_dssp THHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred HhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence 3589999999999998886543 23557777654 333 333334445554432 3333223344444332
Q ss_pred CC-----CC--------CCCceEEEEcCCCCEEEEE--eeceEEEEeCCCcc---cceeeccCCC--------------c
Q 001163 973 RT-----AS--------ALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLE---CLKQFVPREA--------------S 1020 (1134)
Q Consensus 973 ~~-----~~--------~~~v~~l~fs~dg~~l~~~--~d~~i~iwd~~~~~---~~~~~~~~~h--------------~ 1020 (1134)
.. +. ..-++.+.+|.|.++|.++ ..|.|+-||+.... .+.+....+- .
T Consensus 294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~ 373 (461)
T PF05694_consen 294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLR 373 (461)
T ss_dssp E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------
T ss_pred ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccC
Confidence 10 00 1347899999999999996 78999999998643 3333222110 2
Q ss_pred cCEEEEEEccCCCEEEEEe
Q 001163 1021 GPITHATYSCDSQSIYVAF 1039 (1134)
Q Consensus 1021 ~~v~~~~~s~dg~~l~s~s 1039 (1134)
+...-+..|-||++|+..+
T Consensus 374 GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 374 GGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp S----EEE-TTSSEEEEE-
T ss_pred CCCCeEEEccCCeEEEEEe
Confidence 3446788999999987654
No 421
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.25 E-value=0.026 Score=55.30 Aligned_cols=68 Identities=9% Similarity=0.018 Sum_probs=46.6
Q ss_pred EEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecC
Q 001163 992 LLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRIN 1059 (1134)
Q Consensus 992 l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~ 1059 (1134)
+++ +.+|.|++|............+.+.......+.-..++.+..+++.||.|+.|++.-++.+....
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g 141 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG 141 (238)
T ss_pred EEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence 444 68999999998844333333333323333344444566788899999999999999888876655
No 422
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.18 E-value=1.5 Score=45.19 Aligned_cols=170 Identities=8% Similarity=0.106 Sum_probs=109.0
Q ss_pred ccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEE
Q 001163 923 LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIA 1001 (1134)
Q Consensus 923 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~ 1001 (1134)
+.+-...+.++.|+|+.+.|++......-.+|=-..|+......+.... ....+.+.-+|+++++- .++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-------DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-------DPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC-------ChhHeEEecCCEEEEEehhcceEE
Confidence 3454555999999999999999888887777766666644433333222 24568888888888874 778888
Q ss_pred EEeCCCccccee-----ecc--CCC-ccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCC--
Q 001163 1002 IYEAPKLECLKQ-----FVP--REA-SGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLR-- 1071 (1134)
Q Consensus 1002 iwd~~~~~~~~~-----~~~--~~h-~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~-- 1071 (1134)
++.+.....+.. +.. ..+ +...-.++|.|.+..|+.+-+-+-+.||.+..+.--... +.+.+++..
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~----~~~~~~~~~~~ 229 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSV----HASLDPTADRD 229 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccc----ccccCcccccc
Confidence 887765532221 111 122 567789999999999999998888888887643311111 111122222
Q ss_pred ce--eE-EEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163 1072 VY--PL-VIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus 1072 v~--~~-~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
++ .+ .+.|++..+.+|+.+..++.|..-+...
T Consensus 230 ~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 230 LFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred eEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 11 11 3367776777888888887777666653
No 423
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.78 E-value=5.4 Score=41.70 Aligned_cols=211 Identities=14% Similarity=0.146 Sum_probs=119.0
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEEcc------cc-eEEEeccC-----ccCceEEEEEeeCCCE------------
Q 001163 886 AATFLAFHPQDNNIIAIGMEDSSIQIYNVR------VD-EVKTKLKG-----HQKRITGLAFSNTLNV------------ 941 (1134)
Q Consensus 886 ~v~~l~~sp~~~~~la~g~~dg~i~iwd~~------~~-~~~~~l~~-----h~~~V~~l~~s~d~~~------------ 941 (1134)
.-..|+++| .+.+.++....+...+||.. .. .++-++.. -.+..+.+.|+....+
T Consensus 24 N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 356799999 88888888888899999986 11 22333332 2345777877743322
Q ss_pred EEEEeCCCcEEEEECCCCcccc-ceeeeecCCCCCCCCCceEEEEcC--CCCEEEEE--eeceEEEEeCCCcccce--ee
Q 001163 942 LVSSGADSQLCVWSTDGWEKQA-SKFLTIPNGRTASALADTRVQFHL--DQTHLLAV--HETQIAIYEAPKLECLK--QF 1014 (1134)
Q Consensus 942 l~s~s~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~l~fs~--dg~~l~~~--~d~~i~iwd~~~~~~~~--~~ 1014 (1134)
++.+++||+|.-|...-+.... ...+.+..... ..-...+++.. .+.+|..+ ..++|.|||-.-..... .+
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~--gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQ--GNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCC--cceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence 5678899999999864433210 01122222211 12345566654 36677775 78999999876332210 11
Q ss_pred cc---CCC--ccCEEEE---------EEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEE--
Q 001163 1015 VP---REA--SGPITHA---------TYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIA-- 1078 (1134)
Q Consensus 1015 ~~---~~h--~~~v~~~---------~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-- 1078 (1134)
.. ..- .-.|..+ .-.+++..=+.+..-|.|-+||+ .|+++.|+.....+- .-+.|+++
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LN-----aPWG~a~APa 254 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLN-----APWGLAIAPE 254 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCccc-----CCceeeeChh
Confidence 10 000 0111111 11122222222334478999997 477888876444332 22444332
Q ss_pred -ecCCCCCEEEEEecCCcEEEEeCCCCC
Q 001163 1079 -GNPTDPNQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus 1079 -~~p~~~~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
|-.-.+.+|+---.||+|..+|..+.+
T Consensus 255 ~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 255 SFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred hhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 112246788888889999999987554
No 424
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.64 E-value=4.9 Score=39.94 Aligned_cols=218 Identities=12% Similarity=0.098 Sum_probs=109.4
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCC---CEEEEEeCC
Q 001163 363 DFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG---TLFGVAYSK 439 (1134)
Q Consensus 363 ~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~---~~las~s~d 439 (1134)
.|.-..+.|+.+--..|.|.-||+.+.+..+. + +.+. ++.++.+--.| .+.+.++..
T Consensus 21 ~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra-~-----------------ie~p--~~ag~ilpv~~~~q~~~v~~G~k 80 (310)
T KOG4499|consen 21 HWDVERQSLLYVDIEAGEVHRYDIEQNKVYRA-K-----------------IEGP--PSAGFILPVEGGPQEFAVGCGSK 80 (310)
T ss_pred ceEEecceEEEEEeccCceehhhhhhhheEEE-E-----------------EecC--cceeEEEEecCCCceEEEeecce
Confidence 34434444666655667788888877654331 0 1111 13333332222 233333443
Q ss_pred CEEEEEEccC--Cceeeeeeeee--cCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCC--------
Q 001163 440 HIVHLYTYHG--GDELRNHLEIE--AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE-------- 507 (1134)
Q Consensus 440 g~v~iwd~~~--~~~~~~~~~l~--~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~-------- 507 (1134)
-.|.-||-.. -..++....+. ......+.-..+|+|+ +++-.-.|-.- ......|..-.-+.+|.
T Consensus 81 f~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gr--yy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v 157 (310)
T KOG4499|consen 81 FVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGR--YYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCV 157 (310)
T ss_pred EEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCc--eeeeeeccccc-cccccccEEEEeccCCCceeeehhc
Confidence 3455577332 22222211111 1234456667789998 43322222111 22212222222233333
Q ss_pred cCEEEEeccccCCccEEEEecCCCcEEEEecCCCC-------ceeeecC---CCC-CeeEEEECcCCCEEEEEecCCCCC
Q 001163 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG-------SRVDYDA---PGH-SSTMMAYSADGARLFSCGTNKEGE 576 (1134)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-------~~~~~~~---~~~-~v~~~~~s~~~~~l~~~~~~~~~~ 576 (1134)
.--+.++|+.+. ..+.++-+.+-+|.-||.+-.. .+..+.. ..+ .--.+++..+|+..+++-. .
T Consensus 158 ~IsNgl~Wd~d~-K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g 232 (310)
T KOG4499|consen 158 GISNGLAWDSDA-KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----G 232 (310)
T ss_pred cCCccccccccC-cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----C
Confidence 222455665332 2455667778888888844221 1111211 011 2234556667777766653 2
Q ss_pred eEEEEEeCCCCeeEEEecCCCCCceEEEEEcCC
Q 001163 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT 609 (1134)
Q Consensus 577 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~ 609 (1134)
++|...|+.+|+.+.++.-... .++++||...
T Consensus 233 ~~V~~~dp~tGK~L~eiklPt~-qitsccFgGk 264 (310)
T KOG4499|consen 233 GTVQKVDPTTGKILLEIKLPTP-QITSCCFGGK 264 (310)
T ss_pred cEEEEECCCCCcEEEEEEcCCC-ceEEEEecCC
Confidence 3599999999999999988766 8999999754
No 425
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.59 E-value=1.5 Score=53.10 Aligned_cols=76 Identities=12% Similarity=0.131 Sum_probs=55.2
Q ss_pred CCceEEEEcCCCCEEEEEeeceEEEEeCCC-----c-----cc--ce-e------eccCCCccCEEEEEEccC---CCEE
Q 001163 978 LADTRVQFHLDQTHLLAVHETQIAIYEAPK-----L-----EC--LK-Q------FVPREASGPITHATYSCD---SQSI 1035 (1134)
Q Consensus 978 ~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~-----~-----~~--~~-~------~~~~~h~~~v~~~~~s~d---g~~l 1035 (1134)
..|..+.++|+|++|+......|.|-.+.. + +. .. . +....+...|..+.|.|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 358999999999999997667777766642 1 11 10 1 111234678999999986 5889
Q ss_pred EEEecCCcEEEeecCCCc
Q 001163 1036 YVAFEEGSVGVLTASTLR 1053 (1134)
Q Consensus 1036 ~s~s~Dg~i~vwd~~~~~ 1053 (1134)
+.-..|+++|+||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 999999999999997644
No 426
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.46 E-value=3.6 Score=41.93 Aligned_cols=193 Identities=12% Similarity=0.086 Sum_probs=126.5
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccce
Q 001163 886 AATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASK 965 (1134)
Q Consensus 886 ~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 965 (1134)
.-..++-+| ||...+++...+.|--.|..+|+....--+....-..|..-|||...++-+.. .|.-.|-++.+..
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt--- 137 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT--- 137 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE---
Confidence 345677888 88888999888888888999998776655555566778888999888775544 4666666665532
Q ss_pred eeeecCCCCCCCCCceEEEEcCCCCEEEEEeec----------eEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEE
Q 001163 966 FLTIPNGRTASALADTRVQFHLDQTHLLAVHET----------QIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSI 1035 (1134)
Q Consensus 966 ~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~----------~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l 1035 (1134)
..++...+.. .......|.++|++-+++..| .|++|+.. ....-..||..|||..-
T Consensus 138 ~f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------------qG~gpyGi~atpdGsvw 203 (353)
T COG4257 138 RFPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP------------QGGGPYGICATPDGSVW 203 (353)
T ss_pred EeecccccCC--CcccceeeCCCccEEEeeccccceecCcccCceeeeccC------------CCCCCcceEECCCCcEE
Confidence 2333333322 567889999999988875432 35555543 23456788999999998
Q ss_pred EEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCC
Q 001163 1036 YVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus 1036 ~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
++.-.++.|...|-.++... .+..+.-+ |.+ +-.+.-+| -+..-++....+.++-+|.+...
T Consensus 204 yaslagnaiaridp~~~~ae-v~p~P~~~---~~g---sRriwsdp-ig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 204 YASLAGNAIARIDPFAGHAE-VVPQPNAL---KAG---SRRIWSDP-IGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred EEeccccceEEcccccCCcc-eecCCCcc---ccc---ccccccCc-cCcEEEeccCCceeeEeCccccc
Confidence 88878888888887777332 22211110 111 11112234 36677777777778877776555
No 427
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=2.2 Score=41.53 Aligned_cols=176 Identities=10% Similarity=0.047 Sum_probs=95.9
Q ss_pred CCCeEEEee---CCeEEEEEccCCeEEEEecCCCCCeEE--EEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccC
Q 001163 854 NDSYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATF--LAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQK 928 (1134)
Q Consensus 854 dg~~la~~s---dg~i~lwd~~~~~~~~~~~~~~~~v~~--l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~ 928 (1134)
+|.++.+.+ ...|++||+.+++.+....-....+.. +.-. ++.+.+..-.+|...++|.++.+++.++. ..+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTLEELGRFS-YEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHhhhhcccc-cCC
Confidence 445555554 356999999999988775433222211 1111 23444555678889999999988877665 334
Q ss_pred ceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCC
Q 001163 929 RITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPK 1007 (1134)
Q Consensus 929 ~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~ 1007 (1134)
.-+.++- |++.|+.++...+++.-|.++-.......+. .++... ..+.-+.|- ||...|= =....|...|.++
T Consensus 132 eGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT-~~g~pv--~~LNELE~V-dG~lyANVw~t~~I~rI~p~s 205 (262)
T COG3823 132 EGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVT-DDGVPV--SKLNELEWV-DGELYANVWQTTRIARIDPDS 205 (262)
T ss_pred cceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEE-ECCeec--ccccceeee-ccEEEEeeeeecceEEEcCCC
Confidence 4555553 5666777766677777776664332221111 111110 112222222 3333332 2444555556666
Q ss_pred cccceeecc----------CCCccCEEEEEEccCCC-EEEEE
Q 001163 1008 LECLKQFVP----------REASGPITHATYSCDSQ-SIYVA 1038 (1134)
Q Consensus 1008 ~~~~~~~~~----------~~h~~~v~~~~~s~dg~-~l~s~ 1038 (1134)
|+.+.-+.. ..|..-...+++.|++. +++||
T Consensus 206 GrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 206 GRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 665544432 12345667888888874 45554
No 428
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.02 E-value=10 Score=40.71 Aligned_cols=232 Identities=11% Similarity=0.030 Sum_probs=107.3
Q ss_pred CeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEec---CCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceE-E
Q 001163 845 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFM---PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV-K 920 (1134)
Q Consensus 845 ~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~---~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~-~ 920 (1134)
....+.|..+ ..++++..+. .+-..+.|+.-..+. .-.+....+.... ++..++ ++..|.|+.= .+.|+. .
T Consensus 63 ~l~~I~f~~~-~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~iy~T-~DgG~tW~ 137 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAIYRT-TDGGKTWQ 137 (302)
T ss_dssp EEEEEEEETT-EEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--EEEE-SSTTSSEE
T ss_pred eEEEEEecCC-ceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcEEEe-CCCCCCee
Confidence 3567777643 4455555553 333333343333321 1223333444433 333333 3444543321 122221 1
Q ss_pred EeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceE
Q 001163 921 TKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQI 1000 (1134)
Q Consensus 921 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i 1000 (1134)
.....-.+.+..+.-++||++++++..-....-||-.... ......... ..+..+.|+||+...+++..|.|
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~r~~~-----~riq~~gf~~~~~lw~~~~Gg~~ 209 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQPHNRNSS-----RRIQSMGFSPDGNLWMLARGGQI 209 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE--SS-----S-EEEEEE-TTS-EEEEETTTEE
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceEEccCcc-----ceehhceecCCCCEEEEeCCcEE
Confidence 2223344778889999999988888765555677754311 222222211 45999999999998888888888
Q ss_pred EEEe-CCCccccee--eccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEE
Q 001163 1001 AIYE-APKLECLKQ--FVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVI 1077 (1134)
Q Consensus 1001 ~iwd-~~~~~~~~~--~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 1077 (1134)
++=+ ....+.... .....-.-.+..++|.+++...++|+. |++ +...+.|+--.+-.....+| +..+.+
T Consensus 210 ~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~----~n~~~i-- 281 (302)
T PF14870_consen 210 QFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVP----SNLYRI-- 281 (302)
T ss_dssp EEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSS----S---EE--
T ss_pred EEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCC----CceEEE--
Confidence 8877 222222222 111111345899999999888876664 433 34556666544433222222 335555
Q ss_pred EecCCCCCEEEEEecCCcEEEE
Q 001163 1078 AGNPTDPNQFALGLTDGGVYII 1099 (1134)
Q Consensus 1078 ~~~p~~~~~l~s~~~Dg~v~vW 1099 (1134)
.|.+ ++.-.+.+.||.|.-|
T Consensus 282 ~f~~--~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 282 VFVN--PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEE--TTEEEEE-STTEEEEE
T ss_pred EEcC--CCceEEECCCcEEEEe
Confidence 4443 3455566778876554
No 429
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=93.95 E-value=23 Score=44.40 Aligned_cols=23 Identities=22% Similarity=0.127 Sum_probs=17.7
Q ss_pred ccccEEEEEEecCCceeeeeccC
Q 001163 775 TAMRVSRLIYTNSGLAILALASN 797 (1134)
Q Consensus 775 ~~~~i~~l~~spdg~~l~~~~~d 797 (1134)
+-+.+.+++++|||..+++-..+
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCc
Confidence 56778899999999977655544
No 430
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.92 E-value=1.5 Score=51.46 Aligned_cols=112 Identities=15% Similarity=0.193 Sum_probs=75.6
Q ss_pred CEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEec-CCCcCEEEEeccccCCccEEEEecCCCcEEEEec-----
Q 001163 465 SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE-GHESPVYSICPHHKENIQFIFSTATDGKIKAWLY----- 538 (1134)
Q Consensus 465 ~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~----- 538 (1134)
...-+.-|.-++ ..+.-+....+.|||...+...+.-. ...+.|.++.|...++++.+++.+..+.|.++.-
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344444455555 33334445589999998887554322 3578899999999999999999999999999842
Q ss_pred CCCCc----eee--ec-CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeC
Q 001163 539 DNLGS----RVD--YD-APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 584 (1134)
Q Consensus 539 ~~~~~----~~~--~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 584 (1134)
....+ ... +. ...++|.+..|.++|..++.++. .+.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN------qlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN------QLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC------EEEEECC
Confidence 11111 111 22 23368899999999988776642 4778774
No 431
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.90 E-value=1.5 Score=51.66 Aligned_cols=123 Identities=11% Similarity=0.164 Sum_probs=77.9
Q ss_pred EecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEecc-CccCceEEEEEe--eCCCEEEEEeCCCcEEEEE
Q 001163 879 TFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK-GHQKRITGLAFS--NTLNVLVSSGADSQLCVWS 955 (1134)
Q Consensus 879 ~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~-~h~~~V~~l~~s--~d~~~l~s~s~Dg~i~iwd 955 (1134)
++.......+.+.-|. -++..++-+....+.|||...+.....-. ...+.|.++.|. |||+.+++.|....|.++.
T Consensus 24 ~~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 24 TFETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred EEecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 3433444555555555 45555555555689999999886432211 356789999986 7899999999999999986
Q ss_pred CCCC----ccccc---eeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCC
Q 001163 956 TDGW----EKQAS---KFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAP 1006 (1134)
Q Consensus 956 ~~~~----~~~~~---~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~ 1006 (1134)
-... ..... +.+.+. .+.+ .+|.+..|.+||.+ +++.++++.|+|-.
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~-~~T~--h~Igds~Wl~~G~L-vV~sGNqlfv~dk~ 156 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDIS-SHTP--HPIGDSIWLKDGTL-VVGSGNQLFVFDKW 156 (631)
T ss_pred ccchhhhcCCcccceeEEEEee-cCCC--CCccceeEecCCeE-EEEeCCEEEEECCC
Confidence 4211 11111 112221 2222 46889999999974 45567788888753
No 432
>PHA03098 kelch-like protein; Provisional
Probab=93.87 E-value=2.6 Score=50.56 Aligned_cols=151 Identities=7% Similarity=-0.015 Sum_probs=71.9
Q ss_pred ccEEEEecCC-----CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCC--CeEEEEEeCCCCeeEEEe
Q 001163 521 IQFIFSTATD-----GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG--ESYLVEWNESEGAVKRTY 593 (1134)
Q Consensus 521 ~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~--~~~i~~wd~~~~~~~~~~ 593 (1134)
+.+++.|+.+ ..+..||..+..-...-..+.......+..-+++..+.||....+ ...+..||+.+.+....-
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS 422 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence 3677777765 346677766543222111111111111122356666666633221 245888998876544322
Q ss_pred cCCCCCceEEEEEcCCCCEEEEEeCC--------CeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECC--
Q 001163 594 HGLGKRSVGVVQFDTTKNRFLAAGDE--------FMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND-- 663 (1134)
Q Consensus 594 ~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d-- 663 (1134)
.........++ ...++..++.||.+ ..+.+||..+++....-...........+.+ ++..++.|+.+
T Consensus 423 ~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~ 499 (534)
T PHA03098 423 PLPISHYGGCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYE 499 (534)
T ss_pred CCCccccCceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCC
Confidence 11111011122 22355566666632 2388899887765433211111111112222 66777777654
Q ss_pred ---CcEEEEEccCC
Q 001163 664 ---NGIKILANADG 674 (1134)
Q Consensus 664 ---g~i~iw~~~~~ 674 (1134)
+.+.+||..+.
T Consensus 500 ~~~~~v~~yd~~~~ 513 (534)
T PHA03098 500 YYINEIEVYDDKTN 513 (534)
T ss_pred cccceeEEEeCCCC
Confidence 46777776654
No 433
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.68 E-value=3.4 Score=48.22 Aligned_cols=233 Identities=11% Similarity=0.084 Sum_probs=118.6
Q ss_pred CCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEe----cCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce
Q 001163 843 EDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTF----MPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE 918 (1134)
Q Consensus 843 ~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~----~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~ 918 (1134)
.+.+..+.|+.+..++++.-+|++.+|++. |+.+... ......|..+.|.. +| +|+-..+|.+.+-+-....
T Consensus 83 ~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~-~G--Vavlt~~g~v~~i~~~~~~ 158 (829)
T KOG2280|consen 83 HGELIGMGWSDDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFH-NG--VAVLTVSGQVILINGVEEP 158 (829)
T ss_pred CCCeeeecccCCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEec-Cc--eEEEecCCcEEEEcCCCcc
Confidence 347889999999888888889999999984 3333221 11223454444444 45 3333445555444322221
Q ss_pred EEEeccC---ccCceEEEEEeeCCC---EEEEEe-CCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCE
Q 001163 919 VKTKLKG---HQKRITGLAFSNTLN---VLVSSG-ADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTH 991 (1134)
Q Consensus 919 ~~~~l~~---h~~~V~~l~~s~d~~---~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~ 991 (1134)
.+.++.. -.-+-.|-+..+++. .++-.. ..+ ..+...+... .........+ ..+..+..||.+++
T Consensus 159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~---~q~~~~~~~~----~~~~ki~VS~n~~~ 230 (829)
T KOG2280|consen 159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESR---VQLHALSWPN----SSVVKISVSPNRRF 230 (829)
T ss_pred hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccc---ccccccCCCC----ceEEEEEEcCCcce
Confidence 2222222 111112222222211 111111 011 1111111111 1111112222 35788999999999
Q ss_pred EEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCC
Q 001163 992 LLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSL 1070 (1134)
Q Consensus 992 l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~ 1070 (1134)
|+. ...|.|.+-+++..++...+.+..|..+ ..++|..+. ..+.+|+.. ...+.... +
T Consensus 231 laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p-~qm~Wcgnd---------aVvl~~e~~-l~lvgp~g----------d 289 (829)
T KOG2280|consen 231 LALYTETGKIWVVSIDLSQILCEFNCTDHDPP-KQMAWCGND---------AVVLSWEVN-LMLVGPPG----------D 289 (829)
T ss_pred EEEEecCCcEEEEecchhhhhhccCCCCCCch-HhceeecCC---------ceEEEEeee-EEEEcCCC----------C
Confidence 999 7889999999998888888876554333 266665433 444455522 11111111 1
Q ss_pred CceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCCCCccCCCCCC
Q 001163 1071 RVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPNE 1115 (1134)
Q Consensus 1071 ~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~~~~ 1115 (1134)
.|. |-- +...+++.--|| |||..-++-|.--.++++.|
T Consensus 290 ~V~-----f~y-d~t~~l~~E~DG-VRI~t~t~~EFl~rvp~~~e 327 (829)
T KOG2280|consen 290 SVQ-----FYY-DETAILSAEVDG-VRIITSTSHEFLQRVPAETE 327 (829)
T ss_pred ccc-----ccc-CCCceeeeccCe-eEEeccchHHHHHhCChhhh
Confidence 111 111 233456666777 78887777776555555555
No 434
>PHA03098 kelch-like protein; Provisional
Probab=93.61 E-value=3.4 Score=49.49 Aligned_cols=195 Identities=10% Similarity=-0.002 Sum_probs=91.3
Q ss_pred CCCCEEEEEeCCC------EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC-----CeEEEEECCC
Q 001163 428 PDGTLFGVAYSKH------IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RVIKVWDAVT 496 (1134)
Q Consensus 428 pd~~~las~s~dg------~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d-----~~i~iwd~~~ 496 (1134)
.++..++.|+.++ .+..||..+++-.. ...+.........+. -+++ +++.||.+ ..+..||..+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~--~~~~--lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTV--FNNR--IYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEE--ECCE--EEEEeCCCCCEecceEEEEcCCC
Confidence 4566777776542 46788887765322 112221111122222 2455 56666654 3577788776
Q ss_pred CceeEE--ecCCCcCEEEEeccccCCccEEEEecCC------CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEE
Q 001163 497 GTKQYI--FEGHESPVYSICPHHKENIQFIFSTATD------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFS 568 (1134)
Q Consensus 497 ~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 568 (1134)
++-... +....... +++. -++.+.+.|+.+ ..+..||..+..-...-..+.......+..-+++..+.
T Consensus 368 ~~W~~~~~lp~~r~~~-~~~~---~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 443 (534)
T PHA03098 368 SKWREEPPLIFPRYNP-CVVN---VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVI 443 (534)
T ss_pred CceeeCCCcCcCCccc-eEEE---ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEE
Confidence 653321 11111111 1111 133666667632 35778887654322211111111111122335666666
Q ss_pred EecCCCC----CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCce
Q 001163 569 CGTNKEG----ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNL 632 (1134)
Q Consensus 569 ~~~~~~~----~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 632 (1134)
||.+... ...+.+||..+++....-.......-..++. .++..++.||.+ ..+.+||..+.+.
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 6543221 2348889988776543221111101111222 256666677643 4678888776654
No 435
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.56 E-value=4.1 Score=47.66 Aligned_cols=186 Identities=12% Similarity=0.149 Sum_probs=101.6
Q ss_pred CeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEec----cCccCceEEEEEeeCC
Q 001163 864 GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL----KGHQKRITGLAFSNTL 939 (1134)
Q Consensus 864 g~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l----~~h~~~V~~l~~s~d~ 939 (1134)
-.|+|+++ +|+.+..+.-..+.+..+.|+. ..-|.+...+|+++||++. |+.+... ......|..+.|..+|
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCc
Confidence 34888887 5666666554455889999996 4566677899999999986 3333221 2233446666666666
Q ss_pred CEEEEEeCCCcEEEE-ECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE--Eeece--EEEEeCCCccc-cee
Q 001163 940 NVLVSSGADSQLCVW-STDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA--VHETQ--IAIYEAPKLEC-LKQ 1013 (1134)
Q Consensus 940 ~~l~s~s~Dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~--~~d~~--i~iwd~~~~~~-~~~ 1013 (1134)
-.+.+ .+|.+.+- +...... ...-.++... ....|...-++++.... .-+-. ..++..++... ...
T Consensus 140 Vavlt--~~g~v~~i~~~~~~~~--~~~~diP~~~----~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~ 211 (829)
T KOG2280|consen 140 VAVLT--VSGQVILINGVEEPKL--RKMPDIPYNE----LPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHA 211 (829)
T ss_pred eEEEe--cCCcEEEEcCCCcchh--hhCCCCCCcc----CCCcceeEecCCCcceeEEeechhhhhcccceecccccccc
Confidence 44443 34544433 3222111 0111111111 11233333333221111 11100 11122211111 111
Q ss_pred eccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcc
Q 001163 1014 FVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAY 1063 (1134)
Q Consensus 1014 ~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~ 1063 (1134)
+. .-.+.+..+..||++++|+-=..+|.|.+-+.+..+.+|.+.....
T Consensus 212 ~~--~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~ 259 (829)
T KOG2280|consen 212 LS--WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDH 259 (829)
T ss_pred cC--CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCC
Confidence 11 1136788999999999999999999999999999998888775443
No 436
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.44 E-value=25 Score=43.18 Aligned_cols=179 Identities=13% Similarity=0.058 Sum_probs=102.7
Q ss_pred cEEEEEcccceEEEeccCcc----CceEEEEEeeCCC--EEEEEeC-----------CCcEEEEECCCCccccceeeeec
Q 001163 908 SIQIYNVRVDEVKTKLKGHQ----KRITGLAFSNTLN--VLVSSGA-----------DSQLCVWSTDGWEKQASKFLTIP 970 (1134)
Q Consensus 908 ~i~iwd~~~~~~~~~l~~h~----~~V~~l~~s~d~~--~l~s~s~-----------Dg~i~iwd~~~~~~~~~~~~~~~ 970 (1134)
.|++.|..+++.+..+.... -.|.++.|+.... +++.++. +|.++.|++-.... +..++...
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~-~lellh~T 932 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGD-KLELLHKT 932 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCc-eeeeeecc
Confidence 58889988887666554322 2456677765433 3333321 33455555433221 11122111
Q ss_pred CCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEE--ee
Q 001163 971 NGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGV--LT 1048 (1134)
Q Consensus 971 ~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~v--wd 1048 (1134)
+- .-.-.++.|-..++++|-...+++||+-..+.++..........|+++++- +..+++|...-.|.+ |+
T Consensus 933 ~~------~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen 933 EI------PGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred CC------CccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEe
Confidence 11 122356667777888899999999999988888777654446678888764 667877776655554 44
Q ss_pred cCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCC
Q 001163 1049 ASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus 1049 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
-+..+++.....+. .-.|+.+.+ - |-+.++.+..=|.+.+-.++..-
T Consensus 1005 ~~~n~l~~fadD~~------pR~Vt~~~~---l-D~~tvagaDrfGNi~~vR~P~d~ 1051 (1205)
T KOG1898|consen 1005 REDNQLIVFADDPV------PRHVTALEL---L-DYDTVAGADRFGNIAVVRIPPDV 1051 (1205)
T ss_pred cCCCeEEEEeCCCc------cceeeEEEE---e-cCCceeeccccCcEEEEECCCcc
Confidence 44444332222111 112333322 2 56778888888888888876443
No 437
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.04 E-value=2.4 Score=46.03 Aligned_cols=160 Identities=14% Similarity=0.079 Sum_probs=99.9
Q ss_pred CCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEE-e-cCCCC----CeE-EEEEcCCCCcEEEEEeCCCcEEEE-E
Q 001163 842 PEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTT-F-MPPPP----AAT-FLAFHPQDNNIIAIGMEDSSIQIY-N 913 (1134)
Q Consensus 842 h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~-~-~~~~~----~v~-~l~~sp~~~~~la~g~~dg~i~iw-d 913 (1134)
....+..+-..|||+.+..-+..++.++++.+...... + ....+ .|+ .+..-. ++.-+.++..||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 45667788899999999988888888998865443221 1 11112 122 222233 67778888999988776 4
Q ss_pred cccc-e----EEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCC
Q 001163 914 VRVD-E----VKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD 988 (1134)
Q Consensus 914 ~~~~-~----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d 988 (1134)
+..+ . .++.++-...++..+.--.+.+-+++-+..|++.++.-...+. .+..... ..+..++|||.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~----lL~~~~~-----~~~~~~~~Sp~ 368 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL----LLFERAY-----QAPQLVAMSPN 368 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc----eehhhhh-----cCcceeeeCcc
Confidence 4332 1 1223333334444444333456677888889888876544331 1111110 24677999999
Q ss_pred CCEEEEEeeceEEEEeCCCcccc
Q 001163 989 QTHLLAVHETQIAIYEAPKLECL 1011 (1134)
Q Consensus 989 g~~l~~~~d~~i~iwd~~~~~~~ 1011 (1134)
+.+|++-..|.++++.+++....
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENRNPE 391 (733)
T ss_pred cchheeecCCceEEEEecCCCCC
Confidence 99999988899999998866543
No 438
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.85 E-value=0.019 Score=62.28 Aligned_cols=241 Identities=16% Similarity=0.175 Sum_probs=137.3
Q ss_pred EEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEE
Q 001163 780 SRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVM 859 (1134)
Q Consensus 780 ~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la 859 (1134)
-...+.+.+..++.++.+..+..||-.. ...... ...+....++|+.+|..++
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~ag----------------------q~~le~-----n~tg~aldm~wDkegdvla 90 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAG----------------------QVILEL-----NPTGKALDMAWDKEGDVLA 90 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhc----------------------ceeccc-----CCchhHhhhhhccccchhh
Confidence 3456677777788888887777775332 111111 1345556788888887766
Q ss_pred Eee--CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEee
Q 001163 860 SAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSN 937 (1134)
Q Consensus 860 ~~s--dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~ 937 (1134)
... .+.+.+||+.+......-.+....-.-+.|++ +...++.|...|.+.|++..+.+.+...-.|..+++++++.+
T Consensus 91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence 654 68899999965332211111222233378999 889999999999999999988777766666999999999998
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCC-CceEEEEcCCCCEEEEEeeceEEEE--eCC--Ccccce
Q 001163 938 TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASAL-ADTRVQFHLDQTHLLAVHETQIAIY--EAP--KLECLK 1012 (1134)
Q Consensus 938 d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~fs~dg~~l~~~~d~~i~iw--d~~--~~~~~~ 1012 (1134)
.+ +.+.++.|..+.+-...+... ...++......... -...=.|..-|..+.....+.+.+. .++ .+..--
T Consensus 170 Ed-~vil~dcd~~L~v~~qegeta---~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval 245 (615)
T KOG2247|consen 170 ED-YVILCDCDNTLSVTTQEGETA---SLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVAL 245 (615)
T ss_pred cc-eeeecCcHHHHHHhhhcccee---eeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccce
Confidence 77 666777776655444333110 11111110000000 0001123333444443222222211 111 111111
Q ss_pred eeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcce
Q 001163 1013 QFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLR 1055 (1134)
Q Consensus 1013 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~ 1055 (1134)
.+. .-.+.+.++.|--||..+. +-+-|.|..-.+.++++.
T Consensus 246 ~fq--~~~gni~cyrwylDg~i~i-gf~ag~iV~iS~h~aeLg 285 (615)
T KOG2247|consen 246 QFQ--EKYGNIHCYRWYLDGYILI-GFDAGYIVSISAHNAELG 285 (615)
T ss_pred Eee--ecCCceeEEEEeccccccc-cccceeEEEEeccchHHH
Confidence 232 2357788888888877544 555566777777777654
No 439
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.71 E-value=1 Score=54.66 Aligned_cols=146 Identities=13% Similarity=0.086 Sum_probs=95.5
Q ss_pred CCCeeEEEEcCCCCeEEEee--CC-eEEEEEccCCeEEE-----EecC------CCCCeEEEEEcCCCCcEEEEEeCCCc
Q 001163 843 EDAVPCFALSKNDSYVMSAS--GG-KISLFNMMTFKTMT-----TFMP------PPPAATFLAFHPQDNNIIAIGMEDSS 908 (1134)
Q Consensus 843 ~~~v~~v~~s~dg~~la~~s--dg-~i~lwd~~~~~~~~-----~~~~------~~~~v~~l~~sp~~~~~la~g~~dg~ 908 (1134)
.-++..++..+|++..++.. +| .|..||+.+...-+ .+.. ......++.|.|.-.-..|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 45566777788887766554 33 59999986533221 1111 22345678888743445677788999
Q ss_pred EEEEEcccceE-EEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcC
Q 001163 909 IQIYNVRVDEV-KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHL 987 (1134)
Q Consensus 909 i~iwd~~~~~~-~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~ 987 (1134)
|++..+.-... ...+. -....++++|+|.|+.++.|-..|++.-|...-............+ ...|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e-----~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEE-----NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCC-----CcceeEEEEec
Confidence 99987754322 22322 4566899999999999999999999999986653222111111112 14689999988
Q ss_pred CCCEEEE
Q 001163 988 DQTHLLA 994 (1134)
Q Consensus 988 dg~~l~~ 994 (1134)
...+|++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 8888887
No 440
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=92.53 E-value=30 Score=43.23 Aligned_cols=167 Identities=14% Similarity=0.142 Sum_probs=104.3
Q ss_pred CCCCeEEEEEc---CC---CCcEEEEEeCCCcEEEEE------ccc---------ceEEEeccCc---cCceEEEEEeeC
Q 001163 883 PPPAATFLAFH---PQ---DNNIIAIGMEDSSIQIYN------VRV---------DEVKTKLKGH---QKRITGLAFSNT 938 (1134)
Q Consensus 883 ~~~~v~~l~~s---p~---~~~~la~g~~dg~i~iwd------~~~---------~~~~~~l~~h---~~~V~~l~~s~d 938 (1134)
...+|..|.|+ .. ..++|++-. ...+.|+. +.. ..++..+..+ ..+..+++|+|.
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 45678888887 21 224555544 45677776 111 1223333321 235678999974
Q ss_pred -CCEEEEEeCCCcEEEEECCCCccccceeeee---cCCCC-C---CCCCceEEEEcCCCCEEEEEeeceEEEEeCCCccc
Q 001163 939 -LNVLVSSGADSQLCVWSTDGWEKQASKFLTI---PNGRT-A---SALADTRVQFHLDQTHLLAVHETQIAIYEAPKLEC 1010 (1134)
Q Consensus 939 -~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~~~~~-~---~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~ 1010 (1134)
...+|.....|...||++..........+.. ..|.. . ..+.-..+.|.++...|++.....+.++|+.+...
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~ 236 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQ 236 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCCc
Confidence 4689999999999999993322222212211 11221 0 01345689999999999999999999999998876
Q ss_pred ceeeccCCCccCEEEEEEccC--CCEEEEEecCCcEEEeecCCC
Q 001163 1011 LKQFVPREASGPITHATYSCD--SQSIYVAFEEGSVGVLTASTL 1052 (1134)
Q Consensus 1011 ~~~~~~~~h~~~v~~~~~s~d--g~~l~s~s~Dg~i~vwd~~~~ 1052 (1134)
...+........|..+.-+++ +..++-. ...|.+.++.+.
T Consensus 237 ~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 237 TEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred cchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 442333345788999999987 3333322 367888888774
No 441
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.44 E-value=14 Score=37.83 Aligned_cols=196 Identities=8% Similarity=0.079 Sum_probs=107.3
Q ss_pred EEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEE
Q 001163 780 SRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVM 859 (1134)
Q Consensus 780 ~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la 859 (1134)
..+..-|||..-++-+..+..++ |.++.......++............|.++|.+-.
T Consensus 107 hgiv~gpdg~~Witd~~~aI~R~-----------------------dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWF 163 (353)
T COG4257 107 HGIVVGPDGSAWITDTGLAIGRL-----------------------DPKTLEVTRFPLPLEHADANLETAVFDPWGNLWF 163 (353)
T ss_pred ceEEECCCCCeeEecCcceeEEe-----------------------cCcccceEEeecccccCCCcccceeeCCCccEEE
Confidence 34566677765555444444444 5555555555555433456677889999999988
Q ss_pred EeeCCeEEEEEccCCeEEEEecCC-CCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce--EEEeccCccCceEEEEEe
Q 001163 860 SASGGKISLFNMMTFKTMTTFMPP-PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE--VKTKLKGHQKRITGLAFS 936 (1134)
Q Consensus 860 ~~sdg~i~lwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~--~~~~l~~h~~~V~~l~~s 936 (1134)
++..|----.|..+ ..+..+... ...-..++..| +|...++.-.+..|-..|..++. .+-.-......-..+--+
T Consensus 164 t~q~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atp-dGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsd 241 (353)
T COG4257 164 TGQIGAYGRLDPAR-NVISVFPAPQGGGPYGICATP-DGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSD 241 (353)
T ss_pred eeccccceecCccc-CceeeeccCCCCCCcceEECC-CCcEEEEeccccceEEcccccCCcceecCCCcccccccccccC
Confidence 88643211122211 122333322 23457788889 77777776667777777766652 221112212223445557
Q ss_pred eCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCC
Q 001163 937 NTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPK 1007 (1134)
Q Consensus 937 ~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~ 1007 (1134)
|.|+..+|....+.+..+|..... +....++.... .-.++.....++.-.. ...+.|.-+|-++
T Consensus 242 pig~~wittwg~g~l~rfdPs~~s---W~eypLPgs~a----rpys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 242 PIGRAWITTWGTGSLHRFDPSVTS---WIEYPLPGSKA----RPYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred ccCcEEEeccCCceeeEeCccccc---ceeeeCCCCCC----CcceeeeccCCcEEeeccccCceeecCccc
Confidence 788888887778888888866522 23333332221 2344555555544333 2334455455443
No 442
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.41 E-value=22 Score=43.49 Aligned_cols=72 Identities=10% Similarity=0.183 Sum_probs=51.7
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc----------ce--EEE-ec--------cCccCceEEEEEeeC---CC
Q 001163 885 PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV----------DE--VKT-KL--------KGHQKRITGLAFSNT---LN 940 (1134)
Q Consensus 885 ~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~----------~~--~~~-~l--------~~h~~~V~~l~~s~d---~~ 940 (1134)
-.|..+.++| +|++||..+..| |.|-.+.. |+ ..+ ++ ..+...|..+.|+|. +.
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 3588899999 899999888765 55544431 11 111 11 134567899999986 47
Q ss_pred EEEEEeCCCcEEEEECCC
Q 001163 941 VLVSSGADSQLCVWSTDG 958 (1134)
Q Consensus 941 ~l~s~s~Dg~i~iwd~~~ 958 (1134)
+|+.-..|+++++||+..
T Consensus 163 ~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISD 180 (717)
T ss_pred eEEEEecCCEEEEEecCC
Confidence 899999999999999975
No 443
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.39 E-value=16 Score=38.33 Aligned_cols=207 Identities=10% Similarity=0.113 Sum_probs=121.1
Q ss_pred eeEEEEcCCCCeEEEee-CCeEEEEEcc-------CCeEEEEecC-----CCCCeEEEEEcCCCCcE------------E
Q 001163 846 VPCFALSKNDSYVMSAS-GGKISLFNMM-------TFKTMTTFMP-----PPPAATFLAFHPQDNNI------------I 900 (1134)
Q Consensus 846 v~~v~~s~dg~~la~~s-dg~i~lwd~~-------~~~~~~~~~~-----~~~~v~~l~~sp~~~~~------------l 900 (1134)
-+.++++|.+.+-++.. .+...+||.. ...++.++.. .....+.+.|.. ...+ +
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccceeE
Confidence 46899999998777665 6889999986 1223334432 124577788874 2222 4
Q ss_pred EEEeCCCcEEEEEcccceE-----EEecc-CccCce-EEEEEeeC--CCEEEE-EeCCCcEEEEECCCCcccc-ceee--
Q 001163 901 AIGMEDSSIQIYNVRVDEV-----KTKLK-GHQKRI-TGLAFSNT--LNVLVS-SGADSQLCVWSTDGWEKQA-SKFL-- 967 (1134)
Q Consensus 901 a~g~~dg~i~iwd~~~~~~-----~~~l~-~h~~~V-~~l~~s~d--~~~l~s-~s~Dg~i~iwd~~~~~~~~-~~~~-- 967 (1134)
+.+++||+|.=|...-+.. ...+. .-.+.| ..+++... +.+|.. --..++|.++|-.-.+... ....
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 6678999999998532211 11221 112333 35666533 455554 4567889999854422100 0000
Q ss_pred eecCCCCCCCCCceEEEEcCCCCEEEE-E-------------eeceEEEEeCCCcccceeeccCCCccCEEEEEEcc---
Q 001163 968 TIPNGRTASALADTRVQFHLDQTHLLA-V-------------HETQIAIYEAPKLECLKQFVPREASGPITHATYSC--- 1030 (1134)
Q Consensus 968 ~~~~~~~~~~~~v~~l~fs~dg~~l~~-~-------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~--- 1030 (1134)
.++.+..+ -.|..+ .+++.++ + .-|.|-+||.. |..++.+..++.-...+.|+..|
T Consensus 184 ~iPagyAP--FnIqni----g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~F 256 (336)
T TIGR03118 184 ALPAGYAP--FNVQNL----GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESF 256 (336)
T ss_pred CCCCCCCC--cceEEE----CCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhh
Confidence 01111111 011111 1222222 2 23578899986 77777776666666778888855
Q ss_pred ---CCCEEEEEecCCcEEEeecCCCcceeecCC
Q 001163 1031 ---DSQSIYVAFEEGSVGVLTASTLRLRCRINP 1060 (1134)
Q Consensus 1031 ---dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~ 1060 (1134)
.|.+|+----||+|-.||..+|+.+..+..
T Consensus 257 G~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 257 GSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 577888777899999999999998877663
No 444
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.21 E-value=24 Score=39.84 Aligned_cols=152 Identities=8% Similarity=0.046 Sum_probs=86.3
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEEcccceE--EEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccc
Q 001163 887 ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV--KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQAS 964 (1134)
Q Consensus 887 v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~ 964 (1134)
...+..++ ++.+++++.....++-||- |+. ...-..-...++++.|.+++..++.+ .+|. .+|....++....
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~-l~~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGG-LYVSKGTGLTEED 315 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCce-EEEecCCCCcccc
Confidence 34456667 6777776654433333442 221 11112234568899999998877655 5564 4445444432110
Q ss_pred -eeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeec-cCCCccCEEEEEEccCCCEEEEEecCC
Q 001163 965 -KFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFV-PREASGPITHATYSCDSQSIYVAFEEG 1042 (1134)
Q Consensus 965 -~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~-~~~h~~~v~~~~~s~dg~~l~s~s~Dg 1042 (1134)
.......... ...+..+.|.+|+..++++..|.+.... ..|+...... ...-......+.|.++++.+++ +.+|
T Consensus 316 ~~f~~~~~~~~--~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G 391 (398)
T PLN00033 316 FDFEEADIKSR--GFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDG 391 (398)
T ss_pred cceeecccCCC--CcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCc
Confidence 1111111101 1347889999999999999888777654 4444433322 1222467889999877776665 4678
Q ss_pred cEEEe
Q 001163 1043 SVGVL 1047 (1134)
Q Consensus 1043 ~i~vw 1047 (1134)
.|.-|
T Consensus 392 ~il~~ 396 (398)
T PLN00033 392 VLLRY 396 (398)
T ss_pred EEEEe
Confidence 77655
No 445
>PHA02790 Kelch-like protein; Provisional
Probab=92.12 E-value=6.7 Score=46.00 Aligned_cols=183 Identities=9% Similarity=-0.013 Sum_probs=89.8
Q ss_pred CCCeEEEee-C-----CeEEEEEccCCeEEE--EecCCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEEcccceEE--E
Q 001163 854 NDSYVMSAS-G-----GKISLFNMMTFKTMT--TFMPPPPAATFLAFHPQDNNIIAIGMEDS--SIQIYNVRVDEVK--T 921 (1134)
Q Consensus 854 dg~~la~~s-d-----g~i~lwd~~~~~~~~--~~~~~~~~v~~l~~sp~~~~~la~g~~dg--~i~iwd~~~~~~~--~ 921 (1134)
++.++++|+ + .++..||..+.+-.. .+.........++ - ++.+.+.|+.++ .+..||..+++-. .
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 455556665 3 246778876644222 2221111222222 2 678888888643 6788887655322 2
Q ss_pred eccCccCceEEEEEeeCCCEEEEEeCCC---cEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeec
Q 001163 922 KLKGHQKRITGLAFSNTLNVLVSSGADS---QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHET 998 (1134)
Q Consensus 922 ~l~~h~~~V~~l~~s~d~~~l~s~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~ 998 (1134)
.+..... ...+..-+|+..+.||.++ .+..||..+++ +....... .+ .....+..-+|+..+.| |
T Consensus 348 ~l~~~r~--~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~---W~~~~~m~--~~---r~~~~~~~~~~~IYv~G--G 415 (480)
T PHA02790 348 SLLKPRC--NPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ---WQFGPSTY--YP---HYKSCALVFGRRLFLVG--R 415 (480)
T ss_pred CCCCCCc--ccEEEEECCEEEEecCcCCCCccEEEEeCCCCE---EEeCCCCC--Cc---cccceEEEECCEEEEEC--C
Confidence 2221111 1122234788888888654 46778876643 22221111 11 01112234456655555 4
Q ss_pred eEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecC-----CcEEEeecCCCc
Q 001163 999 QIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEE-----GSVGVLTASTLR 1053 (1134)
Q Consensus 999 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D-----g~i~vwd~~~~~ 1053 (1134)
.+.+||..+.+....-.. .+...-.+++ .-+|+..+.|+.+ .+|.+||..+++
T Consensus 416 ~~e~ydp~~~~W~~~~~m-~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDP-IYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ceEEecCCCCcEeEcCCC-CCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 577898876654322111 1111111222 2377777888754 346666666554
No 446
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.06 E-value=13 Score=41.91 Aligned_cols=148 Identities=11% Similarity=0.076 Sum_probs=88.1
Q ss_pred CCeeEEEEcCCCCeEEEeeCCeEE-EEEccCCeEE--EEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce--
Q 001163 844 DAVPCFALSKNDSYVMSASGGKIS-LFNMMTFKTM--TTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE-- 918 (1134)
Q Consensus 844 ~~v~~v~~s~dg~~la~~sdg~i~-lwd~~~~~~~--~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~-- 918 (1134)
+....+..++||.+++.+..|.+. -||- ++.. ..-......++.+.+.+ ++.+++++ .+|.+. +....++
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~-~S~d~G~~~ 313 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLY-VSKGTGLTE 313 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEE-EecCCCCcc
Confidence 345567788999999999877643 3443 2221 11222345689999998 77777655 556544 3444443
Q ss_pred ---EEEeccCc--cCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEE
Q 001163 919 ---VKTKLKGH--QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL 993 (1134)
Q Consensus 919 ---~~~~l~~h--~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~ 993 (1134)
........ ...+.++.|.+++..++ ++.+|.+.... +.++. +......... ......+.|.++++..+
T Consensus 314 ~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~-D~G~t--W~~~~~~~~~---~~~ly~v~f~~~~~g~~ 386 (398)
T PLN00033 314 EDFDFEEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRST-DGGKS--WKRDKGADNI---AANLYSVKFFDDKKGFV 386 (398)
T ss_pred cccceeecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeC-CCCcc--eeEccccCCC---CcceeEEEEcCCCceEE
Confidence 22222221 23488999998876555 55677666553 44331 1111111111 13577899999999999
Q ss_pred EEeeceEEEE
Q 001163 994 AVHETQIAIY 1003 (1134)
Q Consensus 994 ~~~d~~i~iw 1003 (1134)
++.+|.|.-|
T Consensus 387 ~G~~G~il~~ 396 (398)
T PLN00033 387 LGNDGVLLRY 396 (398)
T ss_pred EeCCcEEEEe
Confidence 9999887665
No 447
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.81 E-value=7.3 Score=48.77 Aligned_cols=147 Identities=15% Similarity=0.201 Sum_probs=94.2
Q ss_pred eCCCcEEEEEcccceEEEeccCccCceEEEEEe--------eCCCEEEEEeCCCcEEEEECCCCcccccee-----eeec
Q 001163 904 MEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS--------NTLNVLVSSGADSQLCVWSTDGWEKQASKF-----LTIP 970 (1134)
Q Consensus 904 ~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s--------~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-----~~~~ 970 (1134)
+.|..+.+|+..++.....+.+-+..|..|..- |.=+++...+.--.|.++-+.-.+...... +++.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 457889999999987788888877777776543 233444444445557777654433222111 1122
Q ss_pred CCCCCCCCCceEEEEcCCCCEEEEEeeceEEE--EeCCCc---c-ccee-------------e-c-cCCCccCEEEEEEc
Q 001163 971 NGRTASALADTRVQFHLDQTHLLAVHETQIAI--YEAPKL---E-CLKQ-------------F-V-PREASGPITHATYS 1029 (1134)
Q Consensus 971 ~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~i--wd~~~~---~-~~~~-------------~-~-~~~h~~~v~~~~~s 1029 (1134)
.. +..|.++....+|+.+.+|.||.|+- |....+ + |-+. + . ...+.++|..++..
T Consensus 176 ~d----g~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 176 VD----GVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred cC----CceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 21 14588999899999999998885442 222211 1 1100 0 0 12557799999998
Q ss_pred cCCCEEEEEecCCcEEEeecCC-Ccc
Q 001163 1030 CDSQSIYVAFEEGSVGVLTAST-LRL 1054 (1134)
Q Consensus 1030 ~dg~~l~s~s~Dg~i~vwd~~~-~~~ 1054 (1134)
.....|.+-++.|+|++||+.. |..
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~~G~~ 277 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGGNGLG 277 (1311)
T ss_pred cccceeeeeccCceEEEEEccCCCcc
Confidence 8888899999999999999977 443
No 448
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.51 E-value=26 Score=38.80 Aligned_cols=197 Identities=14% Similarity=0.139 Sum_probs=103.2
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEe--ccccCCccE--EEEec-CC---CcEEEEecCCCCceee-ecC
Q 001163 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC--PHHKENIQF--IFSTA-TD---GKIKAWLYDNLGSRVD-YDA 549 (1134)
Q Consensus 479 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~~--l~s~s-~d---g~i~vwd~~~~~~~~~-~~~ 549 (1134)
+++....++-+.+||+ .|+.++.+.. +.++.+. ....-+|.. |+.++ .+ .+|++|.++....... +..
T Consensus 70 lIigTdK~~GL~VYdL-~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~ 146 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDL-DGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD 146 (381)
T ss_dssp EEEEEETTTEEEEEET-TS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred eEEEEeCCCCEEEEcC-CCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence 6888888899999995 6777776642 2333332 211112222 33333 32 4699998875333222 211
Q ss_pred -------CCCCeeEEEE--Cc-CCCEEEEEecCCCCC-eEEEEEeCCCC----eeEEEecCCCCCceEEEEEcCCCCEEE
Q 001163 550 -------PGHSSTMMAY--SA-DGARLFSCGTNKEGE-SYLVEWNESEG----AVKRTYHGLGKRSVGVVQFDTTKNRFL 614 (1134)
Q Consensus 550 -------~~~~v~~~~~--s~-~~~~l~~~~~~~~~~-~~i~~wd~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~ 614 (1134)
....++.+|+ ++ +|...+.... +++. ....+++-..+ +.+++|.... .+..|.......+|+
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~-k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG-KDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGRLY 223 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE-TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTEEE
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEec-CCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCCEE
Confidence 1124566766 44 4555444432 2222 12333333344 5677887654 577888888889999
Q ss_pred EEeCCCeEEEEEcCCC-----ceeEEEecCCCCCCcceEEEc--CCC-cEE-EEEECCCcEEEEEccCCceeEEEe
Q 001163 615 AAGDEFMIKFWDMDNV-----NLLASIDADGGLQASPCIRFN--KEG-ILL-AVSTNDNGIKILANADGIRLLRTV 681 (1134)
Q Consensus 615 ~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~v~~v~~s--p~~-~~l-~~~~~dg~i~iw~~~~~~~~~~~~ 681 (1134)
.+-++.-|.-|+.+.. +.+...........|-.+++- .++ .+| ++.-.+++..+|+..........+
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence 9999988888887622 222222222233456666664 333 344 444457789999987643433333
No 449
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.33 E-value=24 Score=39.02 Aligned_cols=195 Identities=9% Similarity=0.058 Sum_probs=103.7
Q ss_pred CCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEe----eCCCE--EEEEe-CC---CcEEEEECCCCccccce
Q 001163 896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS----NTLNV--LVSSG-AD---SQLCVWSTDGWEKQASK 965 (1134)
Q Consensus 896 ~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s----~d~~~--l~s~s-~D---g~i~iwd~~~~~~~~~~ 965 (1134)
...+++....++-+.+||+. |+.+..+. .++++.+..- -.|+. |+.++ .+ .+|++|.++.... .
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g---~ 140 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG---E 140 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT---E
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC---c
Confidence 44577777778889999987 55566554 2344444332 23433 33443 32 4699998864211 1
Q ss_pred eeeecCCCC---CCCCCceEEEE--cC-CCCEEEE--EeeceEEEEeCC---Cc----ccceeeccCCCccCEEEEEEcc
Q 001163 966 FLTIPNGRT---ASALADTRVQF--HL-DQTHLLA--VHETQIAIYEAP---KL----ECLKQFVPREASGPITHATYSC 1030 (1134)
Q Consensus 966 ~~~~~~~~~---~~~~~v~~l~f--s~-dg~~l~~--~~d~~i~iwd~~---~~----~~~~~~~~~~h~~~v~~~~~s~ 1030 (1134)
+..+..... .....+..+|+ ++ +|.+.+. ..+|.+.-|.+. .+ +.+++|.. .+.+..+....
T Consensus 141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~sQ~EGCVVDD 217 (381)
T PF02333_consen 141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GSQPEGCVVDD 217 (381)
T ss_dssp EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEET
T ss_pred ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CCcceEEEEec
Confidence 111111000 11133566776 33 5665544 466888777764 23 34556653 45788888888
Q ss_pred CCCEEEEEecCCcEEEeecCCCc-----ceeecCCCcccCCCCCCCceeEEEEecCCC-CCEEEEEecCCcEEEEeCCCC
Q 001163 1031 DSQSIYVAFEEGSVGVLTASTLR-----LRCRINPTAYLPTNPSLRVYPLVIAGNPTD-PNQFALGLTDGGVYIIEPLEA 1104 (1134)
Q Consensus 1031 dg~~l~s~s~Dg~i~vwd~~~~~-----~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~-~~~l~s~~~Dg~v~vW~~~~~ 1104 (1134)
...+|+.+-+|.-|.-|+.+... .+.... . .+....|-.+++-..++. +.+|+|.=.+++..+|+-...
T Consensus 218 e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~-g----~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 218 ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASAD-G----DGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBS-S----SSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred ccCCEEEecCccEEEEEecCCCCCCcceeeeccc-c----cccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 88899999998767777765322 111111 1 123455777777655532 334555555778999998643
No 450
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.28 E-value=1.9 Score=52.40 Aligned_cols=146 Identities=12% Similarity=0.023 Sum_probs=87.4
Q ss_pred CEEEEEEecCCCceEEEEEeCCCeEEEEECCCCcee-----EEecC------CCcCEEEEeccccCCccEEEEecCCCcE
Q 001163 465 SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ-----YIFEG------HESPVYSICPHHKENIQFIFSTATDGKI 533 (1134)
Q Consensus 465 ~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~-----~~~~~------h~~~v~~~~~~~~~~~~~l~s~s~dg~i 533 (1134)
+|..+...+|+....++..+.+-.|..+|+++-..- .-|.. ......++.|.+... ...+....|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence 455666667777545556666668899998754221 11111 122344566766554 345667778888
Q ss_pred EEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecC---CCCCceEEEEEcCCC
Q 001163 534 KAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG---LGKRSVGVVQFDTTK 610 (1134)
Q Consensus 534 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~~~~~v~~~~~~~~~ 610 (1134)
++..+........-..-....++++|+|.|+.++.+-. .+++.-|... .+....+.+ .....|.+++|-...
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n----nGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN----NGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC----CCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence 88866543332222223447889999999999999854 3346666543 333333333 233468889998777
Q ss_pred CEEEEE
Q 001163 611 NRFLAA 616 (1134)
Q Consensus 611 ~~l~~~ 616 (1134)
.++++-
T Consensus 256 eflvvy 261 (1405)
T KOG3630|consen 256 EFLVVY 261 (1405)
T ss_pred eEEEEe
Confidence 666653
No 451
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.23 E-value=5.2 Score=45.04 Aligned_cols=150 Identities=10% Similarity=0.040 Sum_probs=80.3
Q ss_pred CCeEEEEEcCCCCcEEEEEe-----------CCC-cEEEEEccc--ce--EEEeccCccCceEEEEEeeCCCEEEEEeCC
Q 001163 885 PAATFLAFHPQDNNIIAIGM-----------EDS-SIQIYNVRV--DE--VKTKLKGHQKRITGLAFSNTLNVLVSSGAD 948 (1134)
Q Consensus 885 ~~v~~l~~sp~~~~~la~g~-----------~dg-~i~iwd~~~--~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D 948 (1134)
.....|+|.+ +|+++++-. ..+ .|.+++-.+ |+ ....+-..-.....+++.++| ++++ ...
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCC
Confidence 4567889988 777766642 223 677776543 32 223333333456789999998 4444 444
Q ss_pred CcEEEE-ECCCCc-cc--cceeeeecCCC-CCCCCCceEEEEcCCCCEEEE-Eee-------------------ceEEEE
Q 001163 949 SQLCVW-STDGWE-KQ--ASKFLTIPNGR-TASALADTRVQFHLDQTHLLA-VHE-------------------TQIAIY 1003 (1134)
Q Consensus 949 g~i~iw-d~~~~~-~~--~~~~~~~~~~~-~~~~~~v~~l~fs~dg~~l~~-~~d-------------------~~i~iw 1003 (1134)
. |..| +.+... .. ...++...... .........++|.|||.+.++ +.. +.|.-+
T Consensus 91 ~-i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 D-ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred e-EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 4 4434 443321 11 11222222111 001134678999999987765 411 334555
Q ss_pred eCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecC
Q 001163 1004 EAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEE 1041 (1134)
Q Consensus 1004 d~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 1041 (1134)
+..+++. ..+ ..+ -.....++|+++|+++++-..+
T Consensus 170 ~pdg~~~-e~~-a~G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 170 NPDGGKL-RVV-AHG-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ecCCCeE-EEE-ecC-cCCCccceECCCCCEEEEccCC
Confidence 5544332 222 223 3455789999999987765433
No 452
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.21 E-value=0.71 Score=32.34 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=27.2
Q ss_pred CCEEEEEEcCC-C--CEEEEEeCCCEEEEEEccCC
Q 001163 419 ASVNRVMWSPD-G--TLFGVAYSKHIVHLYTYHGG 450 (1134)
Q Consensus 419 ~~V~~l~~spd-~--~~las~s~dg~v~iwd~~~~ 450 (1134)
+.|.++.|||+ + ++||.+-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 47899999984 4 59999989999999999863
No 453
>PHA02790 Kelch-like protein; Provisional
Probab=91.19 E-value=9 Score=44.92 Aligned_cols=186 Identities=8% Similarity=-0.084 Sum_probs=83.7
Q ss_pred CCCEEEEEeCCC-----EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC--CeEEEEECCCCceeE
Q 001163 429 DGTLFGVAYSKH-----IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED--RVIKVWDAVTGTKQY 501 (1134)
Q Consensus 429 d~~~las~s~dg-----~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d--~~i~iwd~~~~~~~~ 501 (1134)
++.++++||.++ .+..||..+++-.. ...+.........+ .-++. +.+.||.+ .++..||..+++-..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~-~~~m~~~r~~~~~v--~~~~~--iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIP-IPPMNSPRLYASGV--PANNK--LYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEE-CCCCCchhhcceEE--EECCE--EEEECCcCCCCceEEEECCCCeEEE
Confidence 455566666542 46678877764322 11222111112222 23555 56666653 467888876654322
Q ss_pred --EecCCCcCEEEEeccccCCccEEEEecCCC---cEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCC
Q 001163 502 --IFEGHESPVYSICPHHKENIQFIFSTATDG---KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGE 576 (1134)
Q Consensus 502 --~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 576 (1134)
.+.........+. -+|.+.+.|+.++ .+..||..+..-...-..........+..-+++..+.|+
T Consensus 346 ~~~l~~~r~~~~~~~----~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG------ 415 (480)
T PHA02790 346 MPSLLKPRCNPAVAS----INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR------ 415 (480)
T ss_pred CCCCCCCCcccEEEE----ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC------
Confidence 2221111111111 2336667777553 466787664332221111111111122233555555553
Q ss_pred eEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCc
Q 001163 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVN 631 (1134)
Q Consensus 577 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 631 (1134)
.+.+||..+.+....-.......-..++ .-+++..+.||.+ ..+.+||..+++
T Consensus 416 -~~e~ydp~~~~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 416 -NAEFYCESSNTWTLIDDPIYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred -ceEEecCCCCcEeEcCCCCCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 2567888776554322211110111222 2355666777643 235555555443
No 454
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=91.17 E-value=16 Score=41.60 Aligned_cols=279 Identities=16% Similarity=0.100 Sum_probs=139.8
Q ss_pred EEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCC
Q 001163 351 MTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG 430 (1134)
Q Consensus 351 ~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~ 430 (1134)
+.+.....|.++.|.-.|.+ -+|+.|| +..+|..+++.++... .....+|..+.-+-.|
T Consensus 159 r~ll~d~~V~aLv~D~~g~l--WvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg 217 (671)
T COG3292 159 RPLLKDTPVVALVFDANGRL--WVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQG 217 (671)
T ss_pred cccccCccceeeeeeccCcE--EEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcC
Confidence 44456788999999999984 4667776 6778888877665311 1112455555555555
Q ss_pred CEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe-cCC--C
Q 001163 431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EGH--E 507 (1134)
Q Consensus 431 ~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h--~ 507 (1134)
+ |-+|+.+| |.+.+.++.+..... ..-..+.|..+.=..+|. +-.|+..|-.+. ....+...... +.| .
T Consensus 218 ~-LWVGTdqG-v~~~e~~G~~~sn~~--~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~ 289 (671)
T COG3292 218 R-LWVGTDQG-VYLQEAEGWRASNWG--PMLPSGNILLLVQDAQGE---LWIGTENGLWRT-RLPRQGLQIPLSKMHLGV 289 (671)
T ss_pred c-EEEEeccc-eEEEchhhccccccC--CCCcchheeeeecccCCC---EEEeecccceeE-ecCCCCccccccccCCcc
Confidence 4 55677777 777776653211100 011233455444444443 555555554332 22333222222 222 2
Q ss_pred cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECc--CCCEEEEEecCCCCCeEEEEEeCC
Q 001163 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA--DGARLFSCGTNKEGESYLVEWNES 585 (1134)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd~~ 585 (1134)
+.|.++. .+.+| -+.+++.++.+++=+-+-..........+..+...+.+| .+..+-.. ...+.+.+-+..
T Consensus 290 S~vnsL~--~D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~----ns~g~L~van~s 362 (671)
T COG3292 290 STVNSLW--LDTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQL----NSIGELMVANGS 362 (671)
T ss_pred cccccee--eccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeec----cccceEEEecCC
Confidence 2344443 34443 466677777665433221111111111122222222222 11111111 012235555666
Q ss_pred CCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC
Q 001163 586 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 664 (1134)
Q Consensus 586 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg 664 (1134)
+|..+..........|+.+++..+ ..+-.++...-+..|+..+ +........ -..+.|..+.-.|+++ |-.|+.+|
T Consensus 363 tG~~v~sv~q~Rg~nit~~~~d~~-g~lWlgs~q~GLsrl~n~n~~avlde~ag-l~ss~V~aived~dns-LWIGTs~G 439 (671)
T COG3292 363 TGELVRSVHQLRGMNITTTLEDSR-GRLWLGSMQNGLSRLDNKNEWAVLDEDAG-LPSSEVSAIVEDPDNS-LWIGTSGG 439 (671)
T ss_pred CCcEEEEeeeccccccchhhhccC-CcEEEEecccchhhhccCCcccccccccC-CcccceeeeeecCCCC-EEEeccCC
Confidence 777766655555556777777774 4556666554456666655 333333222 2245677777778877 66688777
Q ss_pred cEEE
Q 001163 665 GIKI 668 (1134)
Q Consensus 665 ~i~i 668 (1134)
.++.
T Consensus 440 lvk~ 443 (671)
T COG3292 440 LVKR 443 (671)
T ss_pred eEec
Confidence 6654
No 455
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.01 E-value=2.5 Score=46.07 Aligned_cols=125 Identities=14% Similarity=0.156 Sum_probs=82.0
Q ss_pred ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001163 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (1134)
Q Consensus 354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 433 (1134)
...++|.++.||+|.+ ++|+--.|.+|.+.+....+....... ..+..+..|....|+.+ .-+
T Consensus 64 ~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~---------------~ck~k~~~IlGF~W~~s-~e~ 126 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQ---------------ECKTKNANILGFCWTSS-TEI 126 (657)
T ss_pred cCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHH---------------HhccCcceeEEEEEecC-eeE
Confidence 3677999999999999 779999999999999854433221110 02234456899999876 667
Q ss_pred EEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc
Q 001163 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT 498 (1134)
Q Consensus 434 as~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~ 498 (1134)
|..+..| +-+|-+...+ +.....+.|...|.--.|+++..-.+|+|+-..+++.=+-++++.
T Consensus 127 A~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 127 AFITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred EEEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 7776666 6777665432 122235678889999999999885334444344444444444443
No 456
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=90.98 E-value=14 Score=47.82 Aligned_cols=135 Identities=10% Similarity=0.076 Sum_probs=78.3
Q ss_pred EEeCCCcEEEEEcccce-------EEEec---------cCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccce
Q 001163 902 IGMEDSSIQIYNVRVDE-------VKTKL---------KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASK 965 (1134)
Q Consensus 902 ~g~~dg~i~iwd~~~~~-------~~~~l---------~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 965 (1134)
+|-.||.|+-||-.+.. -+..| .-..+.|..+.+++...-++-+. +..+.+=- ...+.....
T Consensus 618 v~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~-~~~~a~~~-~r~~~e~G~ 695 (1774)
T PF11725_consen 618 VGLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGD-NNVFALPQ-RRNKVELGD 695 (1774)
T ss_pred eeeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCC-Cccccccc-ccCCCCCCc
Confidence 34457999999865421 11111 12356677777777665555432 22111100 000111111
Q ss_pred eeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEE
Q 001163 966 FLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVG 1045 (1134)
Q Consensus 966 ~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~ 1045 (1134)
.+.-.+ ...|+.+++-.+.++++....|.+..+. ..+..+ .+...+-++.|..+++.....+ ++...+|.++
T Consensus 696 ~l~Gl~-----~~~i~a~Avv~~~~fvald~qg~lt~h~-k~g~p~-~l~~~gl~G~ik~l~lD~~~nL-~Alt~~G~Lf 767 (1774)
T PF11725_consen 696 ALEGLE-----DRVITAFAVVNDNKFVALDDQGDLTAHQ-KPGRPV-PLSRPGLSGEIKDLALDEKQNL-YALTSTGELF 767 (1774)
T ss_pred cccCCC-----cCcceeEEEEcCCceEEeccCCcccccc-CCCCCc-cCCCCCCCcchhheeeccccce-eEecCCCcee
Confidence 222222 1468999999999999988999999998 666633 3333345789999999877554 4455677666
Q ss_pred E
Q 001163 1046 V 1046 (1134)
Q Consensus 1046 v 1046 (1134)
-
T Consensus 768 ~ 768 (1774)
T PF11725_consen 768 R 768 (1774)
T ss_pred e
Confidence 4
No 457
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.75 E-value=0.37 Score=56.56 Aligned_cols=200 Identities=11% Similarity=0.147 Sum_probs=109.1
Q ss_pred CCCCeeEEEEcCCC-CeEEEee-CCeEEEEEcc--CCeEEEE-----ecCCCCCeEEEEEcCC--CCcEEEEEeCCCcEE
Q 001163 842 PEDAVPCFALSKND-SYVMSAS-GGKISLFNMM--TFKTMTT-----FMPPPPAATFLAFHPQ--DNNIIAIGMEDSSIQ 910 (1134)
Q Consensus 842 h~~~v~~v~~s~dg-~~la~~s-dg~i~lwd~~--~~~~~~~-----~~~~~~~v~~l~~sp~--~~~~la~g~~dg~i~ 910 (1134)
..+.+..+.|-... ..++ . -|.+.|||++ .|+.... .......+.-+.|.|. +.-++..+..+++|+
T Consensus 131 f~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~ 208 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIR 208 (1283)
T ss_pred CCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCcee
Confidence 45556666664211 1111 2 2677888874 2332222 1222233344444431 456777788889999
Q ss_pred EEEcccceEEEeccCccCceEEEE-----------EeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCC
Q 001163 911 IYNVRVDEVKTKLKGHQKRITGLA-----------FSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALA 979 (1134)
Q Consensus 911 iwd~~~~~~~~~l~~h~~~V~~l~-----------~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 979 (1134)
+.+..+... ..+++|...++.++ .||||+.+|.++.||.+++|.+.-......+++..-..|.. ..
T Consensus 209 lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p 285 (1283)
T KOG1916|consen 209 LLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HP 285 (1283)
T ss_pred EeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CC
Confidence 887765432 44566877666544 48999999999999999999876433222233333233321 22
Q ss_pred ceEEEEcCC-------CCE--EEEE--eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCE------------EE
Q 001163 980 DTRVQFHLD-------QTH--LLAV--HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQS------------IY 1036 (1134)
Q Consensus 980 v~~l~fs~d-------g~~--l~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~------------l~ 1036 (1134)
-.|.-|... +.+ ++++ .++.+++|.-...+|.-.+. -..|..+. -+||.. ++
T Consensus 286 ~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~----~d~v~iV~-p~~~~v~~~~~~~~~~~~~v 360 (1283)
T KOG1916|consen 286 RVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKL----IDGVQIVG-PHDGEVTDLSMCQWMTTRLV 360 (1283)
T ss_pred ceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhc----ccceEeec-CCCccccchhhhHHHHHHHH
Confidence 233334433 222 2334 34679999988877773333 23344444 333332 33
Q ss_pred EEecCCcEEEeecCC
Q 001163 1037 VAFEEGSVGVLTAST 1051 (1134)
Q Consensus 1037 s~s~Dg~i~vwd~~~ 1051 (1134)
+-+-|++|.+|.-..
T Consensus 361 ~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 361 SRSVDGTIKIWQNRK 375 (1283)
T ss_pred HhhhHHHHHHhhcch
Confidence 455678888887443
No 458
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.74 E-value=6.3 Score=44.37 Aligned_cols=103 Identities=10% Similarity=0.083 Sum_probs=55.6
Q ss_pred ceEEEEEeeCCCEEEEEe-----------CCC-cEEEEECCCC--ccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE
Q 001163 929 RITGLAFSNTLNVLVSSG-----------ADS-QLCVWSTDGW--EKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA 994 (1134)
Q Consensus 929 ~V~~l~~s~d~~~l~s~s-----------~Dg-~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~ 994 (1134)
....|+|.++|+++++-. ..+ .|.+++-..+ +......+ ..+. .....+++.++| +++
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf--a~~l----~~p~Gi~~~~~G-lyV- 86 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF--AEEL----SMVTGLAVAVGG-VYV- 86 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe--ecCC----CCccceeEecCC-EEE-
Confidence 356788999998877653 223 6777765432 22221121 1211 235779999999 444
Q ss_pred EeeceEEEE-eCCCc-----c--cc-eeeccC--CCccCEEEEEEccCCCEEEEEe
Q 001163 995 VHETQIAIY-EAPKL-----E--CL-KQFVPR--EASGPITHATYSCDSQSIYVAF 1039 (1134)
Q Consensus 995 ~~d~~i~iw-d~~~~-----~--~~-~~~~~~--~h~~~v~~~~~s~dg~~l~s~s 1039 (1134)
+....|..| |.... + .+ ..+... .+......++|.|||.+.++.+
T Consensus 87 ~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 87 ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 434445544 44321 1 11 112211 0234577899999998876555
No 459
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.47 E-value=28 Score=37.41 Aligned_cols=167 Identities=13% Similarity=0.098 Sum_probs=89.5
Q ss_pred eEEEEECCCCceeEEecC------CCcCEEEEeccccCC----ccEEEEecCCCcEEEEecCCCCceeeecCC-------
Q 001163 488 VIKVWDAVTGTKQYIFEG------HESPVYSICPHHKEN----IQFIFSTATDGKIKAWLYDNLGSRVDYDAP------- 550 (1134)
Q Consensus 488 ~i~iwd~~~~~~~~~~~~------h~~~v~~~~~~~~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------- 550 (1134)
.|.+||+.+++.++++.- ..+.+..+.+...+. +-..++=+..+.|.++|+.+++....+...
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 677899999988876642 245577777765332 233444455568889998875543332211
Q ss_pred ------------CCCeeEEEECc---CCCEEEEEecCCCCCeEEEEEeCCC-----C---------eeEEEecCCCCCce
Q 001163 551 ------------GHSSTMMAYSA---DGARLFSCGTNKEGESYLVEWNESE-----G---------AVKRTYHGLGKRSV 601 (1134)
Q Consensus 551 ------------~~~v~~~~~s~---~~~~l~~~~~~~~~~~~i~~wd~~~-----~---------~~~~~~~~~~~~~v 601 (1134)
...+..++.+| ++++|......+ -.+|.+.+ . ..+..+ +......
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-----~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s 188 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-----RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQS 188 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-----CcEEEEEHHHhhCccccccccccccceec-cccCCCC
Confidence 11245566654 666777665432 22332221 1 011111 2211245
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCc---eeEEEecCCC-CCCcceEEEcC--CCcEEEEE
Q 001163 602 GVVQFDTTKNRFLAAGDEFMIKFWDMDNVN---LLASIDADGG-LQASPCIRFNK--EGILLAVS 660 (1134)
Q Consensus 602 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~-~~~v~~v~~sp--~~~~l~~~ 660 (1134)
..++++++|..+++--..+.|..|+..+.- ....+..... ...+..+.+.+ +|.+.+..
T Consensus 189 ~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 189 DGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp CEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 568889988888888899999999987621 2222222222 34556777777 55444433
No 460
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.30 E-value=25 Score=37.87 Aligned_cols=190 Identities=11% Similarity=0.058 Sum_probs=101.4
Q ss_pred eeEEEEcCCCCeEEE--ee-C----------CeEEEEEccCCeEEEEecCC------CCCeEEEEEcCCCC----cEEEE
Q 001163 846 VPCFALSKNDSYVMS--AS-G----------GKISLFNMMTFKTMTTFMPP------PPAATFLAFHPQDN----NIIAI 902 (1134)
Q Consensus 846 v~~v~~s~dg~~la~--~s-d----------g~i~lwd~~~~~~~~~~~~~------~~~v~~l~~sp~~~----~~la~ 902 (1134)
|..+...+++++-+. |. + -+|.+||+.+.+.++++.-+ .+....+.+...++ .++..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 455666666665443 21 1 26889999999988886532 34467777765222 23433
Q ss_pred E-eCCCcEEEEEcccceEEEeccCcc-------------------CceEEEEEee---CCCEEEEEeCCCcEEEEECCCC
Q 001163 903 G-MEDSSIQIYNVRVDEVKTKLKGHQ-------------------KRITGLAFSN---TLNVLVSSGADSQLCVWSTDGW 959 (1134)
Q Consensus 903 g-~~dg~i~iwd~~~~~~~~~l~~h~-------------------~~V~~l~~s~---d~~~l~s~s~Dg~i~iwd~~~~ 959 (1134)
. ...+.|.|+|+.+++.-+.+..+. +.+..++.+| +++.|.-..-.+ -++|.+.+.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~ 161 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS 161 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence 3 334589999999887655443321 2355566654 555666554433 234444331
Q ss_pred ccccc-----e----eeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcc---cceeeccCCC-ccCEEE
Q 001163 960 EKQAS-----K----FLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLE---CLKQFVPREA-SGPITH 1025 (1134)
Q Consensus 960 ~~~~~-----~----~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~---~~~~~~~~~h-~~~v~~ 1025 (1134)
..... . .++.. |... .....++++++|.+.++ ...+.|..|+..+.- ....+..... -..+.+
T Consensus 162 ~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~ 238 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDL-GDKG--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDG 238 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEE-EE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEE
T ss_pred HhhCccccccccccccceec-cccC--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccce
Confidence 11110 0 01110 1100 23467889999988887 478899999988521 2222322222 346788
Q ss_pred EEEcc--CCCEEEEEe
Q 001163 1026 ATYSC--DSQSIYVAF 1039 (1134)
Q Consensus 1026 ~~~s~--dg~~l~s~s 1039 (1134)
+.+.+ +|.+.+.++
T Consensus 239 ~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 239 LKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEE-T--TS-EEEEE-
T ss_pred eeeccccCceEEEEEC
Confidence 88888 777666554
No 461
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.22 E-value=0.64 Score=54.69 Aligned_cols=164 Identities=15% Similarity=0.180 Sum_probs=91.7
Q ss_pred cCCCeeEEEEcC----CCCeEEEEEeCCCcEEEEecC--CccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163 355 QGSAVKSMDFHP----VQQILLVVGTNMGDVMLWEVG--SRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 428 (1134)
Q Consensus 355 h~~~V~~v~fsp----~g~~lla~gs~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 428 (1134)
..+.|-.++|-. .+.. .-|...|||++ .|+......+++ ...-...+.-+.|.|
T Consensus 131 f~G~v~dl~fah~~~pk~~~------~vg~lfVy~vd~l~G~iq~~l~v~~--------------~~p~gs~~~~V~wcp 190 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGRR------LVGELFVYDVDVLQGEIQPQLEVTP--------------ITPYGSDPQLVSWCP 190 (1283)
T ss_pred CCCCcccccccccCChHHHH------HhhhhheeehHhhccccccceEEee--------------cCcCCCCcceeeecc
Confidence 345566666643 3331 22668899875 344333221111 112223334455554
Q ss_pred ---CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEE-----------ecCCCceEEEEEeCCCeEEEEEC
Q 001163 429 ---DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF-----------SYPNKQLSVVTCGEDRVIKVWDA 494 (1134)
Q Consensus 429 ---d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~-----------s~~~~~~~l~s~s~d~~i~iwd~ 494 (1134)
+..++..+-.+++|++.++.+... . .+.+|...+..++| ||||+ .+++++.||.++.|.+
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~-~---l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALR-S---LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQI 264 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHH-H---HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeee
Confidence 777888888889988877665432 1 35568877766654 78998 8899999998888765
Q ss_pred C-----CCceeEEecCCCc-CEEEEeccccCC-------ccEEEEec-CCCcEEEEecCCCCce
Q 001163 495 V-----TGTKQYIFEGHES-PVYSICPHHKEN-------IQFIFSTA-TDGKIKAWLYDNLGSR 544 (1134)
Q Consensus 495 ~-----~~~~~~~~~~h~~-~v~~~~~~~~~~-------~~~l~s~s-~dg~i~vwd~~~~~~~ 544 (1134)
. ..+|++.++.|++ +-.|.-++.... -.++++++ .+..+++|.-...++.
T Consensus 265 yi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 3 3356666777763 322222221110 02344443 3455888865544443
No 462
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=90.11 E-value=38 Score=38.32 Aligned_cols=40 Identities=5% Similarity=-0.048 Sum_probs=18.9
Q ss_pred EEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECC
Q 001163 622 IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 663 (1134)
Q Consensus 622 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d 663 (1134)
+.+||..+.+....-.... ..-...+..-++.+++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~--~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQ--GLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCC--CccceEEEEeCCEEEEEcCCC
Confidence 4578887765432211111 111122333456677777653
No 463
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=90.01 E-value=10 Score=44.35 Aligned_cols=121 Identities=17% Similarity=0.110 Sum_probs=66.2
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEe--------------ec
Q 001163 933 LAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVH--------------ET 998 (1134)
Q Consensus 933 l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~--------------d~ 998 (1134)
+...++|.+++..+ ..+..+|+.... .. ......+.. ..-..+..-|+|++|+.+. +.
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~G~v-~~--~~~l~~~~~---~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D 224 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLLGKV-IW--EYDLPGGYY---DFHHDIDELPNGNLLILASETKYVDEDKDVDTVED 224 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT--E-EE--EEE--TTEE----B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-
T ss_pred eeEcCCCCEEEecC--CceEEEcCCCCE-EE--eeecCCccc---ccccccEECCCCCEEEEEeecccccCCCCccEecC
Confidence 56678898887665 678888876532 11 122222110 0123477889999988754 22
Q ss_pred eEEEEeCCCcccceeeccCCCc-------------------------cCEEEEEEcc-CCCEEEEEecCCcEEEeecCCC
Q 001163 999 QIAIYEAPKLECLKQFVPREAS-------------------------GPITHATYSC-DSQSIYVAFEEGSVGVLTASTL 1052 (1134)
Q Consensus 999 ~i~iwd~~~~~~~~~~~~~~h~-------------------------~~v~~~~~s~-dg~~l~s~s~Dg~i~vwd~~~~ 1052 (1134)
.|..+| .+|+.+..|....|- ..+.++.+.+ |+.+|+|+-.-..|...|..++
T Consensus 225 ~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~ 303 (477)
T PF05935_consen 225 VIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTG 303 (477)
T ss_dssp EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS
T ss_pred EEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCC
Confidence 466667 777776665533321 3578899988 6666666666678999999999
Q ss_pred cceeecCCCc
Q 001163 1053 RLRCRINPTA 1062 (1134)
Q Consensus 1053 ~~~~~~~~~~ 1062 (1134)
+....+....
T Consensus 304 ~i~Wilg~~~ 313 (477)
T PF05935_consen 304 KIKWILGPPG 313 (477)
T ss_dssp -EEEEES-ST
T ss_pred cEEEEeCCCC
Confidence 9988887543
No 464
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.93 E-value=0.96 Score=31.70 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=26.6
Q ss_pred CCeeEEEEcCCCC--eEEEEEeCCCcEEEEecCCc
Q 001163 357 SAVKSMDFHPVQQ--ILLVVGTNMGDVMLWEVGSR 389 (1134)
Q Consensus 357 ~~V~~v~fsp~g~--~lla~gs~dg~v~iwd~~~~ 389 (1134)
+.|.+++|||... .||+..-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4688999997544 57888888899999999853
No 465
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.61 E-value=16 Score=43.75 Aligned_cols=118 Identities=8% Similarity=0.034 Sum_probs=76.9
Q ss_pred CCEEEEEEcC--CCCEEEEEeCCCEEEEEEccC-------C----------ceeeeeeeeecCCCCEEEEEEe--cCCCc
Q 001163 419 ASVNRVMWSP--DGTLFGVAYSKHIVHLYTYHG-------G----------DELRNHLEIEAHVGSVNDLAFS--YPNKQ 477 (1134)
Q Consensus 419 ~~V~~l~~sp--d~~~las~s~dg~v~iwd~~~-------~----------~~~~~~~~l~~h~~~V~~v~~s--~~~~~ 477 (1134)
..|+.|.... +...|+.+.+||.|.+|.+++ . ..+++...+. -....+.++++ ...+
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r- 178 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR- 178 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce-
Confidence 3677776665 667899999999999997632 0 0011222222 34478999998 5555
Q ss_pred eEEEEEeCCCeEEEEECCC--CceeE-EecCCCcCEEEEeccccCC---cc-EEEEecCCCcEEEEecC
Q 001163 478 LSVVTCGEDRVIKVWDAVT--GTKQY-IFEGHESPVYSICPHHKEN---IQ-FIFSTATDGKIKAWLYD 539 (1134)
Q Consensus 478 ~~l~s~s~d~~i~iwd~~~--~~~~~-~~~~h~~~v~~~~~~~~~~---~~-~l~s~s~dg~i~vwd~~ 539 (1134)
+||.++....|.||-... .+... .-..|...|.+|+|..... |. .+++++-.|.+.+|++.
T Consensus 179 -lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 179 -LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred -EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 778888777777765433 22111 1112667788898876552 22 78889999999998873
No 466
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.55 E-value=37 Score=37.42 Aligned_cols=163 Identities=11% Similarity=0.129 Sum_probs=90.3
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCc------EEEEEccc--c--eEE-----EeccCccC--------ceEEEEEeeCCC
Q 001163 884 PPAATFLAFHPQDNNIIAIGMEDSS------IQIYNVRV--D--EVK-----TKLKGHQK--------RITGLAFSNTLN 940 (1134)
Q Consensus 884 ~~~v~~l~~sp~~~~~la~g~~dg~------i~iwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~s~d~~ 940 (1134)
-+....+.+.++++. +++.+++|. +..+++.. + ..+ ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 466788899863454 444556666 55555443 1 011 11221111 233688888888
Q ss_pred EEEEEeCC------CcEEEEECCCCccccceeeeecCC---------CCCCCCCceEEEEcCCCCEEEEE------eec-
Q 001163 941 VLVSSGAD------SQLCVWSTDGWEKQASKFLTIPNG---------RTASALADTRVQFHLDQTHLLAV------HET- 998 (1134)
Q Consensus 941 ~l~s~s~D------g~i~iwd~~~~~~~~~~~~~~~~~---------~~~~~~~v~~l~fs~dg~~l~~~------~d~- 998 (1134)
++++.=.+ ..|+.++.. |+.... +.++.. ......+...++++|||+.|++. .|+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~--~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~ 174 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRR--FPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP 174 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-Ccccce--EccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence 88877666 667777766 443221 111211 11122578999999999955542 232
Q ss_pred -e-------EEE--EeCCC-cccceeecc--CC-----CccCEEEEEEccCCCEEEEEe-----cCCcEEEeecC
Q 001163 999 -Q-------IAI--YEAPK-LECLKQFVP--RE-----ASGPITHATYSCDSQSIYVAF-----EEGSVGVLTAS 1050 (1134)
Q Consensus 999 -~-------i~i--wd~~~-~~~~~~~~~--~~-----h~~~v~~~~~s~dg~~l~s~s-----~Dg~i~vwd~~ 1050 (1134)
. +++ ||..+ ++....+.. .. ....|+.+.+-+|+++|+.== ....++|+.+.
T Consensus 175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 1 444 55554 333444331 11 357889999999999876422 23456666554
No 467
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.38 E-value=42 Score=37.84 Aligned_cols=197 Identities=16% Similarity=0.067 Sum_probs=104.7
Q ss_pred EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCc-CE
Q 001163 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES-PV 510 (1134)
Q Consensus 432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~-~v 510 (1134)
.+..+..+|.|.-.|..++..+...... +....+..-.+..+|+ ++.++.++.+...|..+|+.+........ .+
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 3444467777777777777644322111 1112233333333776 78888899999999889999887765551 11
Q ss_pred EEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC---CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC
Q 001163 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG---HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (1134)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 587 (1134)
..-.+ ..+ ..++.++.++.+...|..++..+....... ..+..-....++. ++.+..+ . +..+.-.|..+|
T Consensus 146 ~~~~v--~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~-~-~~~~~a~~~~~G 219 (370)
T COG1520 146 ASPPV--VGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDG-Y-DGILYALNAEDG 219 (370)
T ss_pred ecCcE--EcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCC-C-cceEEEEEccCC
Confidence 11111 112 344445467777777777666655543322 1111111122333 3333221 1 335777888888
Q ss_pred eeEEEecCCCCCceE----EEEEcC----CCCEEEEEeCCCeEEEEEcCCCceeEEEec
Q 001163 588 AVKRTYHGLGKRSVG----VVQFDT----TKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638 (1134)
Q Consensus 588 ~~~~~~~~~~~~~v~----~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (1134)
............... ...+.. .+..++.++.++.+...|..+++.+-....
T Consensus 220 ~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 220 TLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred cEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 777664322110100 000100 112345667778899999999998888765
No 468
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.27 E-value=4.7 Score=51.13 Aligned_cols=69 Identities=14% Similarity=0.180 Sum_probs=47.5
Q ss_pred CceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcc
Q 001163 979 ADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRL 1054 (1134)
Q Consensus 979 ~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~ 1054 (1134)
.+.+..+..+...+.....+.+.+|+.........+...++.. +.++..++++-.||.+.+||...+..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE-------SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC-------ccCCceEEEEEecCCEEeeecCCCce
Confidence 3455555555555555566677777766555444444333222 88999999999999999999999865
No 469
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.76 E-value=47 Score=37.50 Aligned_cols=202 Identities=11% Similarity=-0.013 Sum_probs=107.3
Q ss_pred EcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCC--CCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCcc-
Q 001163 851 LSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPP--PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQ- 927 (1134)
Q Consensus 851 ~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~--~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~- 927 (1134)
...||+.++...+|.|.-.|..+++.+....... ..+..-.+.. +|+ ++.++.+|.++.+|..+|+.+.......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 4456666666568888888888888765543221 2333333443 554 7788889989999988898887766555
Q ss_pred CceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEe--eceEEEEeC
Q 001163 928 KRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVH--ETQIAIYEA 1005 (1134)
Q Consensus 928 ~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~--d~~i~iwd~ 1005 (1134)
-.+..-.+-.++ .+..++.|+.+.-.|..+++..= ......+ .. ..+..-....++..++... ++.+.-.|.
T Consensus 143 ~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W--~~~~~~~-~~--~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~ 216 (370)
T COG1520 143 PYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKW--TYETPAP-LS--LSIYGSPAIASGTVYVGSDGYDGILYALNA 216 (370)
T ss_pred eEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEE--EEecCCc-cc--cccccCceeecceEEEecCCCcceEEEEEc
Confidence 122222222333 23333356777777766655211 0011110 00 0011111133444333333 456777777
Q ss_pred CCcccceeecc---CCCccC-----EEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCC
Q 001163 1006 PKLECLKQFVP---REASGP-----ITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPT 1061 (1134)
Q Consensus 1006 ~~~~~~~~~~~---~~h~~~-----v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~ 1061 (1134)
.+|........ .+.... +..-..--++. +..++.++.+...|..+|+.+.+....
T Consensus 217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGG-VYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred cCCcEeeeeeeecccCcccccccccccCceEEECCc-EEEEecCCeEEEEEcCCCceEEEEecc
Confidence 77776655321 111111 11101111222 356677788999999999998887743
No 470
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.75 E-value=8.2 Score=43.09 Aligned_cols=46 Identities=13% Similarity=0.015 Sum_probs=35.1
Q ss_pred CCceeEEEEecCCC--CCEEEEEecCCcEEEEeCCCCCCCccCCCCCC
Q 001163 1070 LRVYPLVIAGNPTD--PNQFALGLTDGGVYIIEPLEAEGRWGTSPPNE 1115 (1134)
Q Consensus 1070 ~~v~~~~~~~~p~~--~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~~~~ 1115 (1134)
.+++-..++|+|+. ...|+.-+.|..+|+|+.++..--|...+|.-
T Consensus 164 ~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpgepg 211 (741)
T KOG4460|consen 164 TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPGEPG 211 (741)
T ss_pred CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccCCCcC
Confidence 33444566899965 56888899999999999999888787754443
No 471
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.16 E-value=34 Score=39.19 Aligned_cols=108 Identities=19% Similarity=0.233 Sum_probs=60.6
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce--EEEecc-----CccCceEEEEEeeCC------CEEEEEe----
Q 001163 884 PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE--VKTKLK-----GHQKRITGLAFSNTL------NVLVSSG---- 946 (1134)
Q Consensus 884 ~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~--~~~~l~-----~h~~~V~~l~~s~d~------~~l~s~s---- 946 (1134)
-.....|+|.| |+++|++--..|.|++++..++. .+..+. .-.+....|+++|+- .+|....
T Consensus 29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 34568899999 88877766557999999865543 222221 124668899999874 2333321
Q ss_pred ------CCCcEEEEECCCC--cccc-ceeee-ecCCCCCCCCCceEEEEcCCCCEEEEE
Q 001163 947 ------ADSQLCVWSTDGW--EKQA-SKFLT-IPNGRTASALADTRVQFHLDQTHLLAV 995 (1134)
Q Consensus 947 ------~Dg~i~iwd~~~~--~~~~-~~~~~-~~~~~~~~~~~v~~l~fs~dg~~l~~~ 995 (1134)
....|.-|.+... .... ..++. .+.... ..-..++|.|||.+.++.
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~---H~GgrI~FgPDG~LYVs~ 163 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGND---HNGGRLVFGPDGKIYYTI 163 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCC---cCCceEEECCCCcEEEEE
Confidence 1233555555421 1111 11221 111111 124678899999877763
No 472
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.15 E-value=46 Score=36.69 Aligned_cols=69 Identities=7% Similarity=-0.028 Sum_probs=35.1
Q ss_pred cEEEEecCC-----CcEEEEecCCCCceeeecCCC-CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeE
Q 001163 522 QFIFSTATD-----GKIKAWLYDNLGSRVDYDAPG-HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590 (1134)
Q Consensus 522 ~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 590 (1134)
.+.+.|+.. ..+..||+.+.+-...-.... ......+..-+++..+.++.+......+.+||+.+.+..
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 566666642 357777776543222211111 122223334466677777654322233678998876543
No 473
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.11 E-value=1.8 Score=29.88 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=23.5
Q ss_pred eecCCCeeEEEEcCCCCeEEEEEeCC--CcEEEE
Q 001163 353 LNQGSAVKSMDFHPVQQILLVVGTNM--GDVMLW 384 (1134)
Q Consensus 353 ~~h~~~V~~v~fsp~g~~lla~gs~d--g~v~iw 384 (1134)
......-....|||||++|+.++..+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 33556678999999999998888777 766665
No 474
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=87.66 E-value=19 Score=40.22 Aligned_cols=151 Identities=11% Similarity=0.100 Sum_probs=91.4
Q ss_pred EEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccC------CccEEEEecCCCcEEEEecCC
Q 001163 467 NDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKE------NIQFIFSTATDGKIKAWLYDN 540 (1134)
Q Consensus 467 ~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~------~~~~l~s~s~dg~i~vwd~~~ 540 (1134)
.-+-.+.++..+++..|+....++-.|++.|+.+-.+.-|...| +.|.|.. +.+.|+ |-.+..|.-.|.+.
T Consensus 470 ~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~ 546 (776)
T COG5167 470 EKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRA 546 (776)
T ss_pred hhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEE-eecccceEEecccc
Confidence 33444445555566677777888889999999999998887664 3443321 223444 44455555556654
Q ss_pred CCceeeecCCCC-----CeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEE
Q 001163 541 LGSRVDYDAPGH-----SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLA 615 (1134)
Q Consensus 541 ~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 615 (1134)
.+.......... ...+..- ....++++++..++ |++||--.-+....+++..+ .|..+..+.+|+++++
T Consensus 547 ~gNKi~v~esKdY~tKn~Fss~~t-TesGyIa~as~kGD----irLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ila 620 (776)
T COG5167 547 RGNKIKVVESKDYKTKNKFSSGMT-TESGYIAAASRKGD----IRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILA 620 (776)
T ss_pred cCCceeeeeehhcccccccccccc-ccCceEEEecCCCc----eeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEE
Confidence 443322221111 2222222 23457888876554 99999654444445555554 7888889999999988
Q ss_pred EeCCCeEEEEEc
Q 001163 616 AGDEFMIKFWDM 627 (1134)
Q Consensus 616 ~~~dg~i~iwd~ 627 (1134)
.+. ..+.+-|+
T Consensus 621 TCk-~yllL~d~ 631 (776)
T COG5167 621 TCK-NYLLLTDV 631 (776)
T ss_pred eec-ceEEEEec
Confidence 875 35555554
No 475
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.33 E-value=31 Score=38.08 Aligned_cols=160 Identities=19% Similarity=0.195 Sum_probs=88.1
Q ss_pred ccccEEEEEEecCCceeeeeccCCe------EEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeE
Q 001163 775 TAMRVSRLIYTNSGLAILALASNAV------HKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPC 848 (1134)
Q Consensus 775 ~~~~i~~l~~spdg~~l~~~~~dg~------i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~ 848 (1134)
.-+.+..+.+.+++..+++.+.+|. +..+++..... ..+.......+.+-+.. |.... . ..-...+
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~-G~~~~----~--~~~D~Eg 89 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPD-GQPFP----K--NGLDPEG 89 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCC-CCcCC----c--CCCChhH
Confidence 3466789999976666777777776 55444443111 00111111111111111 11111 0 1224557
Q ss_pred EEEcCCCCeEEEee-C------CeEEEEEccCCeEEEEec---------------CCCCCeEEEEEcCCCCcEEEEEeC-
Q 001163 849 FALSKNDSYVMSAS-G------GKISLFNMMTFKTMTTFM---------------PPPPAATFLAFHPQDNNIIAIGME- 905 (1134)
Q Consensus 849 v~~s~dg~~la~~s-d------g~i~lwd~~~~~~~~~~~---------------~~~~~v~~l~~sp~~~~~la~g~~- 905 (1134)
+++.++|.++++.. + ..|+.++.. |+.+..+. ..+...-+|+++| +|+.|.++..
T Consensus 90 i~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~ 167 (326)
T PF13449_consen 90 IAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMES 167 (326)
T ss_pred eEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECc
Confidence 88888888888776 6 668888876 66554441 1234588999999 7875555432
Q ss_pred ----CC--c-------EEEEEcc--c-ce----EEEeccC-----ccCceEEEEEeeCCCEEEE
Q 001163 906 ----DS--S-------IQIYNVR--V-DE----VKTKLKG-----HQKRITGLAFSNTLNVLVS 944 (1134)
Q Consensus 906 ----dg--~-------i~iwd~~--~-~~----~~~~l~~-----h~~~V~~l~~s~d~~~l~s 944 (1134)
|+ . ++|+... + ++ ....+.. ....|..+.+-+++++|+-
T Consensus 168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 22 1 5555443 3 22 2233332 3567888999999987764
No 476
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.09 E-value=33 Score=33.85 Aligned_cols=173 Identities=16% Similarity=0.099 Sum_probs=90.4
Q ss_pred EEEEEeCC--CeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeE
Q 001163 479 SVVTCGED--RVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM 556 (1134)
Q Consensus 479 ~l~s~s~d--~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 556 (1134)
++.+.+.- ..|++||+.+|+.+.+-.-....+..=-+...++ .+..-.-.+|.-..+|.++.+....+...+. -..
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd-~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge-GWg 135 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD-YFYQLTWKEGVAFKYDADTLEELGRFSYEGE-GWG 135 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccc-eEEEEEeccceeEEEChHHhhhhcccccCCc-cee
Confidence 56666653 4799999999988765432211121111111122 2223334567777788777666555444332 222
Q ss_pred EEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEE----ecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce
Q 001163 557 MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT----YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL 632 (1134)
Q Consensus 557 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 632 (1134)
...|++.|+.+ +|..+++.-|.++.....+ +.+..-..++-+.|- +|...+-.=.+..|...+.++|+.
T Consensus 136 --Lt~d~~~Lims----dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 136 --LTSDDKNLIMS----DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred --eecCCcceEee----CCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 34456556554 4456788888876544433 233221122333332 343333333444555567777776
Q ss_pred eEEEecC----------CCCCCcceEEEcCCC-cEEEEE
Q 001163 633 LASIDAD----------GGLQASPCIRFNKEG-ILLAVS 660 (1134)
Q Consensus 633 ~~~~~~~----------~~~~~v~~v~~sp~~-~~l~~~ 660 (1134)
+..+... .+....+.+++.|++ +++++|
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 6655432 123356789999977 455554
No 477
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.55 E-value=3.6 Score=48.92 Aligned_cols=134 Identities=13% Similarity=0.128 Sum_probs=78.9
Q ss_pred eeEEEEcC-CCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccc--cCccccccccccCCCCEEEEEEc--CCCCEE
Q 001163 359 VKSMDFHP-VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGA--CSMPLQASLSSDYTASVNRVMWS--PDGTLF 433 (1134)
Q Consensus 359 V~~v~fsp-~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~V~~l~~s--pd~~~l 433 (1134)
|+.+.... -+..+|+.+..||.|.+|.+++--......- -+... ........+...-...++.++++ ...++|
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~--~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFS--EDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhc--cccccccccccCCCCeEeecCCceeEEEEEecCcceEE
Confidence 44444333 2345788899999999998743110000000 00000 00001111223345699999999 889999
Q ss_pred EEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCC--c--eEEEEEeCCCeEEEEEC
Q 001163 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK--Q--LSVVTCGEDRVIKVWDA 494 (1134)
Q Consensus 434 as~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~--~--~~l~s~s~d~~i~iwd~ 494 (1134)
|++++...|.||-......-.....-..|...|-+|+|.++.. . ..+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9999999898886654211111101113667799999987651 1 36888999999999887
No 478
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=85.94 E-value=19 Score=32.88 Aligned_cols=115 Identities=10% Similarity=0.080 Sum_probs=69.5
Q ss_pred EEeeCCCEEEEEeCCCcEEEEECCCCccc------cceeeeecCCCCCCCCCceEEE---Ec--CCCCEEEEEeeceEEE
Q 001163 934 AFSNTLNVLVSSGADSQLCVWSTDGWEKQ------ASKFLTIPNGRTASALADTRVQ---FH--LDQTHLLAVHETQIAI 1002 (1134)
Q Consensus 934 ~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~v~~l~---fs--~dg~~l~~~~d~~i~i 1002 (1134)
.|......|+.++.-++|.|.+....... ....+.+.. .|++++ |. .+...|++++...+..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~-------~italaaG~l~~~~~~D~LliGt~t~lla 77 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQ-------EITALAAGRLKPDDGRDCLLIGTQTSLLA 77 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCC-------ceEEEEEEecCCCCCcCEEEEeccceEEE
Confidence 34444556777778888888876643211 112333322 356664 43 2456788899999999
Q ss_pred EeCCCcccceeeccCCCccCEEEEEEc---cCCCEEEEEecCCcEEEeecCCCcceeec
Q 001163 1003 YEAPKLECLKQFVPREASGPITHATYS---CDSQSIYVAFEEGSVGVLTASTLRLRCRI 1058 (1134)
Q Consensus 1003 wd~~~~~~~~~~~~~~h~~~v~~~~~s---~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~ 1058 (1134)
||+.+..-+.... -...|.++.+- ....-|+..+.+..|.-||.+..+..+..
T Consensus 78 YDV~~N~d~Fyke---~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 78 YDVENNSDLFYKE---VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred EEcccCchhhhhh---CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 9998665432222 14567776663 22233555555788999998777665443
No 479
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.49 E-value=42 Score=33.65 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=41.6
Q ss_pred eeEEEEcCCCCeEEEeeCCeEEEEEcc--CCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeC
Q 001163 846 VPCFALSKNDSYVMSASGGKISLFNMM--TFKTMTTFMPPPPAATFLAFHPQDNNIIAIGME 905 (1134)
Q Consensus 846 v~~v~~s~dg~~la~~sdg~i~lwd~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~ 905 (1134)
...++-+..+.++++++..+|.+|++. ..+.+.++.. -+.|..++++. .|.+|++--.
T Consensus 20 P~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~ 79 (215)
T PF14761_consen 20 PTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSE-AGDYLVTLEE 79 (215)
T ss_pred cceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecc-ccceEEEEEe
Confidence 344555554455555668889999987 4556667764 38899999999 8999998643
No 480
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.15 E-value=22 Score=45.31 Aligned_cols=36 Identities=28% Similarity=0.436 Sum_probs=29.2
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccc
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRER 391 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~ 391 (1134)
-......++|+|..+ ++|.|+..|.|.++-...-+.
T Consensus 34 ~~~~~~~~afD~~q~-llai~t~tg~i~~yg~~~ve~ 69 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQG-LLAIGTRTGAIKIYGQPGVEF 69 (993)
T ss_pred CCCCCcceeeccccc-eEEEEEecccEEEecccceEE
Confidence 345677899999988 789999999999998765443
No 481
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=84.97 E-value=80 Score=36.35 Aligned_cols=139 Identities=9% Similarity=0.087 Sum_probs=73.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC
Q 001163 418 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 497 (1134)
Q Consensus 418 ~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~ 497 (1134)
..+|..+.+...|. +-.|+.|| +..||..+++.+... ......+|..+.-+-.|. +..|+.+| |.+.+.+..
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G~ 235 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEGW 235 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhhc
Confidence 45788888888775 55677787 788888887755421 122335677777777776 66666655 566664442
Q ss_pred ceeEEecC-CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecC---CCCCeeEEEECcCCCEEEE
Q 001163 498 TKQYIFEG-HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA---PGHSSTMMAYSADGARLFS 568 (1134)
Q Consensus 498 ~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~ 568 (1134)
+....... ....|..+.- +.. ..+..|+.+|..+. ............. .-..|.++....+|..-+.
T Consensus 236 ~~sn~~~~lp~~~I~ll~q--D~q-G~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~ 306 (671)
T COG3292 236 RASNWGPMLPSGNILLLVQ--DAQ-GELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVG 306 (671)
T ss_pred cccccCCCCcchheeeeec--ccC-CCEEEeecccceeE-ecCCCCccccccccCCccccccceeeccCCCEeee
Confidence 22211111 2334444432 223 35666776665432 2222222221111 1224566666667765443
No 482
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=84.88 E-value=87 Score=37.37 Aligned_cols=99 Identities=10% Similarity=0.196 Sum_probs=57.0
Q ss_pred EEEEEecCCceeeeeccCC-----eEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163 780 SRLIYTNSGLAILALASNA-----VHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 854 (1134)
Q Consensus 780 ~~l~~spdg~~l~~~~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d 854 (1134)
..+.|-|.|..+++.+.|| .+.++.-+ -+..|..-.. .+-...+..++|+-.
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErN-------------------GLrHGef~lr----~~~dEk~~~~~wn~~ 306 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERN-------------------GLRHGEFDLR----VGCDEKAFLENWNLL 306 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccC-------------------CcccCCcccc----CCchhhhhhhhhhHH
Confidence 4578999999999887654 23333211 0111211000 012344556777777
Q ss_pred CCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEE
Q 001163 855 DSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIA 901 (1134)
Q Consensus 855 g~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la 901 (1134)
...++.+..+.+++|-..+..-.....-....+.-+.|+|.....|.
T Consensus 307 s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~ 353 (1243)
T COG5290 307 STVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLL 353 (1243)
T ss_pred HHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEE
Confidence 67777777889999987665433333224456778899984333333
No 483
>PRK13613 lipoprotein LpqB; Provisional
Probab=84.53 E-value=71 Score=38.30 Aligned_cols=192 Identities=9% Similarity=-0.012 Sum_probs=100.6
Q ss_pred CeeEEEEcCCCCeEEEee-CC-eEEEEEccCCeE----EEEecCCCCCeEEEEEcCCCCcEEEEEe-CCC--cEEEEEcc
Q 001163 845 AVPCFALSKNDSYVMSAS-GG-KISLFNMMTFKT----MTTFMPPPPAATFLAFHPQDNNIIAIGM-EDS--SIQIYNVR 915 (1134)
Q Consensus 845 ~v~~v~~s~dg~~la~~s-dg-~i~lwd~~~~~~----~~~~~~~~~~v~~l~~sp~~~~~la~g~-~dg--~i~iwd~~ 915 (1134)
.+.+++.++++..+|... ++ .+++..+..+.. ..... .....+.-.|.+ ++.+..+-. .++ .+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~-~~~~Lt~PS~d~-~g~vWtvd~~~~~~~vl~v~~~- 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT-ADGRLTSPSWDG-RGDLWVVDRDPADPRLLWLLQG- 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee-ccCcccCCcCcC-CCCEEEecCCCCCceEEEEEcC-
Confidence 677899999999888776 44 466665533322 11111 123466677777 454333311 122 2555543
Q ss_pred cceEE--EeccCccC-ceEEEEEeeCCCEEEEEeC---CCcEEEEECCCCcccc---ceeeeecCCCCCCCCCceEEEEc
Q 001163 916 VDEVK--TKLKGHQK-RITGLAFSNTLNVLVSSGA---DSQLCVWSTDGWEKQA---SKFLTIPNGRTASALADTRVQFH 986 (1134)
Q Consensus 916 ~~~~~--~~l~~h~~-~V~~l~~s~d~~~l~s~s~---Dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~v~~l~fs 986 (1134)
+|+.. ... ...+ .|..+..|+||.+++.... .++|.|=-+....... .....+.... ..+.+++|.
T Consensus 441 ~G~~~~V~~~-~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l----~~v~~~~W~ 515 (599)
T PRK13613 441 DGEPVEVRTP-ELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPEL----EDVTDMSWA 515 (599)
T ss_pred CCcEEEeecc-ccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCC----CccceeEEc
Confidence 44432 111 2223 7999999999988776543 3556555444322111 1111221111 348899999
Q ss_pred CCCCEEEEE--eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCC-EEEEEecCCcE
Q 001163 987 LDQTHLLAV--HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQ-SIYVAFEEGSV 1044 (1134)
Q Consensus 987 ~dg~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s~Dg~i 1044 (1134)
.++.+++.+ .++...+|-+.-...-......+.-..+..++-..+.+ .|+.+..++.|
T Consensus 516 ~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 516 GDSQLVVLGREEGGVQQARYVQVDGSTPPASAPAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred CCCEEEEEeccCCCCcceEEEecCCcCcccccccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 999987754 33344445443221111111112345667777777766 45552444444
No 484
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.59 E-value=4.6 Score=41.31 Aligned_cols=74 Identities=11% Similarity=0.102 Sum_probs=52.2
Q ss_pred EeeCCCEEEEEeCCCcEEEEECCCCccccce--eeeecCCCC----CCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCc
Q 001163 935 FSNTLNVLVSSGADSQLCVWSTDGWEKQASK--FLTIPNGRT----ASALADTRVQFHLDQTHLLAVHETQIAIYEAPKL 1008 (1134)
Q Consensus 935 ~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~--~~~~~~~~~----~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~ 1008 (1134)
+..++++|+..+.+|.+++||+.+.+..... +..+..... .....|..+.++.+|.-+++-.+|..+.|+.+-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4557889999999999999999997654322 111121100 1225688999999998888877889999998643
No 485
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.23 E-value=4.6 Score=41.28 Aligned_cols=72 Identities=13% Similarity=0.080 Sum_probs=47.4
Q ss_pred EccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCC-------CCCCCceeEEEEecCCCCCEEEEEecCCcEEEEe
Q 001163 1028 YSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPT-------NPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIE 1100 (1134)
Q Consensus 1028 ~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~ 1100 (1134)
+..++.+|++.+.+|.+++||+.+++....-..-..+.. .....|..+.+. . +|.-|++-+ +|..+.|+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt--~-~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLT--S-NGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEc--C-CCCEEEEEe-CCCEEEec
Confidence 456899999999999999999999887544321111111 234556555443 3 566666554 57889988
Q ss_pred CCC
Q 001163 1101 PLE 1103 (1134)
Q Consensus 1101 ~~~ 1103 (1134)
.+-
T Consensus 94 ~~L 96 (219)
T PF07569_consen 94 PDL 96 (219)
T ss_pred ccc
Confidence 753
No 486
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=82.87 E-value=95 Score=40.79 Aligned_cols=149 Identities=11% Similarity=0.190 Sum_probs=85.7
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
|...++.|.-+++|.++= -.|+.++.||..... |+.- -..-...++.+.-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~lR---lHd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLR---LHDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCeEE---eecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceEe
Confidence 556777778888887553 267778888876552 4310 011233555555555666665
Q ss_pred EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC------ce--eEEecCC
Q 001163 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG------TK--QYIFEGH 506 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~------~~--~~~~~~h 506 (1134)
=+.+ .|-|+..+.... .--..+.+...+++|.- .+.++-....+.+|++..- ++ ...+.+-
T Consensus 419 -k~~~---~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 -KDDD---TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred -cCCC---ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 2222 234454443211 11234667777888883 3667777778899998754 11 2233333
Q ss_pred CcCEEEEeccccCCccEEEEecCCCcEEEEecCC
Q 001163 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540 (1134)
Q Consensus 507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 540 (1134)
.....+|.++ + ..|+.+..+|.++.=++..
T Consensus 488 ~a~A~~VgLs--~--drLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGLS--N--DRLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheeec--C--CeEEEEeCCCCEEeccccc
Confidence 3345556653 3 3588888899988776654
No 487
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=82.45 E-value=79 Score=34.36 Aligned_cols=238 Identities=12% Similarity=0.022 Sum_probs=0.0
Q ss_pred EecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCC-cccccCCCCCCCCCCeeEEEEcCCCCeEEEee
Q 001163 784 YTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSG-ILMTNDISDTNPEDAVPCFALSKNDSYVMSAS 862 (1134)
Q Consensus 784 ~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s 862 (1134)
+.-++++++.|+.+|...+ +.... ......+ +...|+++.+.+..+.|++-+
T Consensus 9 ~~~~~~~lL~GTe~Gly~~-----------------------~~~~~~~~~~kl~----~~~~v~q~~v~~~~~lLi~Ls 61 (302)
T smart00036 9 ITCDGKWLLVGTEEGLYVL-----------------------NISDQPGTLEKLI----GRRSVTQIWVLEENNVLLMIS 61 (302)
T ss_pred cccCCcEEEEEeCCceEEE-----------------------EcccCCCCeEEec----CcCceEEEEEEhhhCEEEEEe
Q ss_pred CCe--EEEEEccCCeE----------------EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEecc
Q 001163 863 GGK--ISLFNMMTFKT----------------MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK 924 (1134)
Q Consensus 863 dg~--i~lwd~~~~~~----------------~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~ 924 (1134)
|+. ++++++..... .. .-++.......++........+++....+|.++............
T Consensus 62 gk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~-~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~ 140 (302)
T smart00036 62 GKKPQLYSHPLSALVEKKEALGSARLVIRKNVLT-KIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLF 140 (302)
T ss_pred CCcceEEEEEHHHhhhhhhccCCccccccccceE-eCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhh
Q ss_pred Cc--------cCceEEEEEeeC--CCEEEEEeCCCcEEEEECCC--CccccceeeeecCCCCCCCCCceEEEEcCCCCEE
Q 001163 925 GH--------QKRITGLAFSNT--LNVLVSSGADSQLCVWSTDG--WEKQASKFLTIPNGRTASALADTRVQFHLDQTHL 992 (1134)
Q Consensus 925 ~h--------~~~V~~l~~s~d--~~~l~s~s~Dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l 992 (1134)
.. ..++..+..+++ ...+..|+..+...++++.. ................. .++....+..+ .+
T Consensus 141 k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~--~p~~i~~l~~~--e~ 216 (302)
T smart00036 141 KSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSL--KPISVVQVPRD--EF 216 (302)
T ss_pred cccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccccccccccccccc--CceEEEEECCC--eE
Q ss_pred EEEeeceEEEEeCCC-cccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeec
Q 001163 993 LAVHETQIAIYEAPK-LECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRI 1058 (1134)
Q Consensus 993 ~~~~d~~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~ 1058 (1134)
+.+.|....+-|... ........ .-.....++++. ..||+.-..++ |.|+++.+++++..+
T Consensus 217 Llc~~~~~v~Vn~~G~~~~r~~~l--~w~~~p~~~~~~--~pyll~~~~~~-ievr~l~~~~l~q~i 278 (302)
T smart00036 217 LLCYDEFGVFVNLYGKRRSRNPIL--HWEFMPESFAYH--SPYLLAFHDNG-IEIRSIKTGELLQEL 278 (302)
T ss_pred EEEECcEEEEEeCCCCccccceEE--EcCCcccEEEEE--CCEEEEEcCCc-EEEEECCCCceEEEE
No 488
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=81.80 E-value=88 Score=34.45 Aligned_cols=70 Identities=11% Similarity=0.032 Sum_probs=37.5
Q ss_pred CCCEEEEEecC-CCCCeEEEEEeCCCCeeEEE--ecCCCCCceEEEEEcCCCCEEEEEeCCC----eEEEEEcCCCcee
Q 001163 562 DGARLFSCGTN-KEGESYLVEWNESEGAVKRT--YHGLGKRSVGVVQFDTTKNRFLAAGDEF----MIKFWDMDNVNLL 633 (1134)
Q Consensus 562 ~~~~l~~~~~~-~~~~~~i~~wd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~ 633 (1134)
+++..+.++.. ......+..||+.+.+.... +.... .....+...+++..+.|+.++ .+.+||..+.+..
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~--r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP--RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC--CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 55666666532 22234588899887654432 22111 112222334566777777553 3568888876543
No 489
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=81.77 E-value=60 Score=32.55 Aligned_cols=50 Identities=12% Similarity=0.305 Sum_probs=36.3
Q ss_pred CEEEEEeCCCeEEEEEcC--CCceeEEEecCCCCCCcceEEEcCCCcEEEEEECC
Q 001163 611 NRFLAAGDEFMIKFWDMD--NVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 663 (1134)
Q Consensus 611 ~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d 663 (1134)
..|+.+...+.|.+|++. ..+++..+.. .+.|..+.++..|++|++--.+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T---v~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST---VGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc---hhheeEEEeccccceEEEEEee
Confidence 445444666789999988 3445555543 4678899999999999986543
No 490
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=81.76 E-value=7.8 Score=34.17 Aligned_cols=80 Identities=21% Similarity=0.312 Sum_probs=53.3
Q ss_pred CcchHHHHHHHHHHhhhcCHHHHHHHHHHhcCCCccHHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHH
Q 001163 2 SSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1134)
Q Consensus 2 ~~~~~e~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1134)
..+..|=+..|.+|++..| +.+.+++|.||++- .+|+ +.|+.+..|...+ .+.. .-...+...
T Consensus 32 ~~L~~E~~~Fi~~Fi~~rG---nlKe~e~~lgiSYP--TvR~-----rLd~ii~~lg~~~-~~~~------~~~~~~~~I 94 (113)
T PF09862_consen 32 ARLSPEQLEFIKLFIKNRG---NLKEMEKELGISYP--TVRN-----RLDKIIEKLGYEE-DEEE------EEEDERKEI 94 (113)
T ss_pred hcCCHHHHHHHHHHHHhcC---CHHHHHHHHCCCcH--HHHH-----HHHHHHHHhCCCC-Cccc------ccchhHHHH
Confidence 3567788899999999999 99999999999984 2221 1233333333211 1111 122567889
Q ss_pred HHHHhcCC--HHHHHHHHH
Q 001163 82 LEALDKRD--RAKAVEILV 98 (1134)
Q Consensus 82 lEll~~~~--~~~a~~~l~ 98 (1134)
|+.|+.|+ .++|++.|+
T Consensus 95 L~~L~~GeIs~eeA~~~Lk 113 (113)
T PF09862_consen 95 LDKLEKGEISVEEALEILK 113 (113)
T ss_pred HHHHHcCCCCHHHHHHHhC
Confidence 99999998 677887764
No 491
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=81.71 E-value=13 Score=36.41 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=29.1
Q ss_pred eEEEEecCCC-----CCEEEEEecCCcEEEEeCCCC-CCCccC
Q 001163 1074 PLVIAGNPTD-----PNQFALGLTDGGVYIIEPLEA-EGRWGT 1110 (1134)
Q Consensus 1074 ~~~~~~~p~~-----~~~l~s~~~Dg~v~vW~~~~~-~~~~~~ 1110 (1134)
.+.++|+|.+ +-+|++.+.+|.|.||..... .++|..
T Consensus 88 vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~~~~W~~ 130 (173)
T PF12657_consen 88 VVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNPQGEWNR 130 (173)
T ss_pred EEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCccccEee
Confidence 3456899842 238999999999999999877 778875
No 492
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=81.71 E-value=83 Score=36.82 Aligned_cols=155 Identities=12% Similarity=0.127 Sum_probs=76.2
Q ss_pred eEEEEE---eCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCC-
Q 001163 478 LSVVTC---GEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHS- 553 (1134)
Q Consensus 478 ~~l~s~---s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~- 553 (1134)
+++++. .......+.| ..|.....+......... +...++|.+++... ..+..+|+. ++...........
T Consensus 116 l~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~--~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~ 189 (477)
T PF05935_consen 116 LYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNS--FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYY 189 (477)
T ss_dssp EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SS--EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE
T ss_pred EEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccce--eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCccc
Confidence 355555 3455667777 566666555322211111 22346666666554 777777775 3333334333321
Q ss_pred --eeEEEECcCCCEEEEEec---------CCCCCeEEEEEeCCCCeeEEEecCC------CC------------------
Q 001163 554 --STMMAYSADGARLFSCGT---------NKEGESYLVEWNESEGAVKRTYHGL------GK------------------ 598 (1134)
Q Consensus 554 --v~~~~~s~~~~~l~~~~~---------~~~~~~~i~~wd~~~~~~~~~~~~~------~~------------------ 598 (1134)
-..+...|+|++|+.+.. ...-...|..+| .+|+.+..+... ..
T Consensus 190 ~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~ 268 (477)
T PF05935_consen 190 DFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGR 268 (477)
T ss_dssp -B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTS
T ss_pred ccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCC
Confidence 345678899999887762 111123466677 777776654211 00
Q ss_pred --CceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecC
Q 001163 599 --RSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDAD 639 (1134)
Q Consensus 599 --~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 639 (1134)
-.++++.+.+....|+..+ .-..|...|..+++....+..+
T Consensus 269 DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 269 DWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp BS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred CccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 1367888888555555555 5558999999999888887654
No 493
>PRK13615 lipoprotein LpqB; Provisional
Probab=81.49 E-value=1.2e+02 Score=35.87 Aligned_cols=154 Identities=9% Similarity=-0.014 Sum_probs=89.2
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCC-Cccccce
Q 001163 887 ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDG-WEKQASK 965 (1134)
Q Consensus 887 v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~-~~~~~~~ 965 (1134)
..+++.++ ++..+|....++.+.++... +.....+. ...++.-.|.++| .+.+.-.+...++..... ++..
T Consensus 336 ~~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~--- 407 (557)
T PRK13615 336 ADAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGH--- 407 (557)
T ss_pred cccceEcC-CCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceE---
Confidence 37889999 78888888778878887655 22222222 2236666787777 555554444455544332 2211
Q ss_pred eeeecCCCCCCCCCceEEEEcCCCCEEEEEe----eceEEEEeCCC-cc---cc-ee-eccCCCccCEEEEEEccCCCEE
Q 001163 966 FLTIPNGRTASALADTRVQFHLDQTHLLAVH----ETQIAIYEAPK-LE---CL-KQ-FVPREASGPITHATYSCDSQSI 1035 (1134)
Q Consensus 966 ~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~----d~~i~iwd~~~-~~---~~-~~-~~~~~h~~~v~~~~~s~dg~~l 1035 (1134)
.+...-. ....|..+..|+||-.++.-. .++|.|--+.. +. .+ .. .....-...+.++.|..++.++
T Consensus 408 ~v~v~~~---~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~la 484 (557)
T PRK13615 408 PVAVSWT---ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVA 484 (557)
T ss_pred Eeecccc---CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEE
Confidence 1111111 124699999999999988732 35666643322 22 12 11 1111123488999999999986
Q ss_pred EEE---ecCCcEEEeecCC
Q 001163 1036 YVA---FEEGSVGVLTAST 1051 (1134)
Q Consensus 1036 ~s~---s~Dg~i~vwd~~~ 1051 (1134)
+.+ +.+..+++..+..
T Consensus 485 Vl~~~~~~~~~v~~v~v~g 503 (557)
T PRK13615 485 TLTLAPDGERQVELHQVGG 503 (557)
T ss_pred EEeccCCCCceEEEEECCC
Confidence 654 2335566666663
No 494
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=81.40 E-value=95 Score=34.58 Aligned_cols=42 Identities=10% Similarity=-0.066 Sum_probs=19.2
Q ss_pred CcEEEEecCCCCceeeecCCC-CCeeEEEECcCCCEEEEEecC
Q 001163 531 GKIKAWLYDNLGSRVDYDAPG-HSSTMMAYSADGARLFSCGTN 572 (1134)
Q Consensus 531 g~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~ 572 (1134)
..+.+||..+..-...-.... .........-+++..+.++..
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence 457778876543322211111 111112223466777777654
No 495
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=81.30 E-value=75 Score=33.31 Aligned_cols=186 Identities=10% Similarity=0.070 Sum_probs=101.7
Q ss_pred eCCCCCCcccccCCCC----CceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeecccc
Q 001163 330 YTPQSLGQSSYSTDDL----PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGAC 405 (1134)
Q Consensus 330 ~s~~~~~l~~~~~d~~----~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 405 (1134)
+-++|..++.....+. ..-.+..+.-.+-+..+.|+.+- +..+..+.-++|.|+.+......
T Consensus 56 ~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse~y---vyvad~ssGL~IvDIS~P~sP~~----------- 121 (370)
T COG5276 56 YVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVSEEY---VYVADWSSGLRIVDISTPDSPTL----------- 121 (370)
T ss_pred ccccCceEeeccccCcccccCcceEEEEehhhhhheeEecccE---EEEEcCCCceEEEeccCCCCcce-----------
Confidence 4455555544332222 12344455567778888888763 33445556688888877654322
Q ss_pred CccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC
Q 001163 406 SMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE 485 (1134)
Q Consensus 406 ~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~ 485 (1134)
...+.- .+--.++. -.|++..++.-|.-..+.|+.+.+............+.-..++.| |+ +-..+..
T Consensus 122 -----~~~lnt-~gyaygv~--vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn--~AYvA~~ 189 (370)
T COG5276 122 -----IGFLNT-DGYAYGVY--VSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GN--YAYVAWR 189 (370)
T ss_pred -----eccccC-CceEEEEE--ecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cC--eEEEEEe
Confidence 111111 12233333 358888888755557888988766543333344444445677777 55 4566678
Q ss_pred CCeEEEEECCCCceeE---EecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceee
Q 001163 486 DRVIKVWDAVTGTKQY---IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD 546 (1134)
Q Consensus 486 d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 546 (1134)
|+-+.+-|+.....-. ... ....+.++.. +++..+++ -.+--+.+-|.........
T Consensus 190 d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~v--sdnr~y~v--vy~egvlivd~s~~ssp~~ 248 (370)
T COG5276 190 DGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSV--SDNRAYLV--VYDEGVLIVDVSGPSSPTV 248 (370)
T ss_pred CCCeEEEEccCCCCCeEEEEEe-cCCceEEEEe--cCCeeEEE--EcccceEEEecCCCCCceE
Confidence 8889999987653322 221 2225666654 33323333 3334455666665554443
No 496
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.04 E-value=16 Score=46.11 Aligned_cols=167 Identities=13% Similarity=0.199 Sum_probs=96.8
Q ss_pred CceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEE
Q 001163 346 PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425 (1134)
Q Consensus 346 ~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 425 (1134)
|++.+..++|...=+.+-+-|.=.+.- -+.|..+.+|+++++..... +.+-+..|..+.
T Consensus 68 P~el~eq~~~~~~~~~mGiFpeI~RaW--iTiDn~L~lWny~~~~e~~~-------------------~d~~shtIl~V~ 126 (1311)
T KOG1900|consen 68 PDELLEQFSNIECKTDMGIFPEIGRAW--ITIDNNLFLWNYESDNELAE-------------------YDGLSHTILKVG 126 (1311)
T ss_pred CHHHHHHhcCcceeeeeccchhhcceE--EEeCCeEEEEEcCCCCcccc-------------------ccchhhhheeee
Confidence 445555555555555566556433322 25788899999998654432 344444555554
Q ss_pred E--------cCCCCEEEEEeCCCEEEEEEccCCceeeee------eeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEE
Q 001163 426 W--------SPDGTLFGVAYSKHIVHLYTYHGGDELRNH------LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (1134)
Q Consensus 426 ~--------spd~~~las~s~dg~v~iwd~~~~~~~~~~------~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i 491 (1134)
. -|.=++++....--.|.|+-+.-.+..... .++......|+|+....+|+ ++-+|.|| .+
T Consensus 127 LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR---IF~~G~dg--~l 201 (1311)
T KOG1900|consen 127 LVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR---IFFAGRDG--NL 201 (1311)
T ss_pred eecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc---EEEeecCC--CE
Confidence 3 333345555445555666655322211111 11222355789999777887 55566666 44
Q ss_pred EEC----CCC---c-e----------------eEEec-CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCC
Q 001163 492 WDA----VTG---T-K----------------QYIFE-GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540 (1134)
Q Consensus 492 wd~----~~~---~-~----------------~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 540 (1134)
|.+ ..| + + +..+. .+..+|..+.+..+. ..+.+-+..|+|.+||+..
T Consensus 202 yEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR--~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 202 YELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR--NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred EEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc--ceeeeeccCceEEEEEccC
Confidence 443 211 1 1 01223 567899999885544 7899999999999999875
No 497
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=81.01 E-value=7.4 Score=38.19 Aligned_cols=31 Identities=35% Similarity=0.570 Sum_probs=25.6
Q ss_pred CCEEEEEEcCCC------CEEEEEeCCCEEEEEEccC
Q 001163 419 ASVNRVMWSPDG------TLFGVAYSKHIVHLYTYHG 449 (1134)
Q Consensus 419 ~~V~~l~~spd~------~~las~s~dg~v~iwd~~~ 449 (1134)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 489999999943 3788889999999998654
No 498
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=79.70 E-value=31 Score=38.70 Aligned_cols=142 Identities=15% Similarity=0.185 Sum_probs=87.9
Q ss_pred CCCEEEE-EeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCC-------ceEEEEEeCCCeEEEEECC-CCce
Q 001163 429 DGTLFGV-AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK-------QLSVVTCGEDRVIKVWDAV-TGTK 499 (1134)
Q Consensus 429 d~~~las-~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~-------~~~l~s~s~d~~i~iwd~~-~~~~ 499 (1134)
|..+|.. |+....++-.|++.|+.+. .+.-|..- -+.|.|+.+ + .|+--| +..|.--|.+ .|..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvve---eW~~~ddv--vVqy~p~~kf~qmt~eq-tlvGlS-~~svFrIDPR~~gNK 550 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVE---EWDLKDDV--VVQYNPYFKFQQMTDEQ-TLVGLS-DYSVFRIDPRARGNK 550 (776)
T ss_pred CcceEEecCCCcccceeeecccceeee---EeecCCcc--eeecCCchhHHhcCccc-eEEeec-ccceEEecccccCCc
Confidence 5555544 5555667788888888766 45556654 567777532 1 244444 4444444544 3433
Q ss_pred eEEec--C--CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCC
Q 001163 500 QYIFE--G--HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG 575 (1134)
Q Consensus 500 ~~~~~--~--h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 575 (1134)
+..-. . ......+..- ..+ .+++.+|..|-|++||--.......+..-+..|..+..+.+|+++++.+
T Consensus 551 i~v~esKdY~tKn~Fss~~t--Tes-GyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC----- 622 (776)
T COG5167 551 IKVVESKDYKTKNKFSSGMT--TES-GYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC----- 622 (776)
T ss_pred eeeeeehhcccccccccccc--ccC-ceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-----
Confidence 32211 1 1122233322 222 5999999999999999765556666666777899999999999988766
Q ss_pred CeEEEEEeCC
Q 001163 576 ESYLVEWNES 585 (1134)
Q Consensus 576 ~~~i~~wd~~ 585 (1134)
...+.+.|+.
T Consensus 623 k~yllL~d~~ 632 (776)
T COG5167 623 KNYLLLTDVP 632 (776)
T ss_pred cceEEEEecc
Confidence 3357777754
No 499
>PLN02193 nitrile-specifier protein
Probab=79.33 E-value=1.4e+02 Score=35.08 Aligned_cols=151 Identities=10% Similarity=-0.042 Sum_probs=71.8
Q ss_pred EEEEEeCC-----CeEEEEECCCCceeEEecC---CCcC-EEEEeccccCCccEEEEecCCC-----cEEEEecCCCCce
Q 001163 479 SVVTCGED-----RVIKVWDAVTGTKQYIFEG---HESP-VYSICPHHKENIQFIFSTATDG-----KIKAWLYDNLGSR 544 (1134)
Q Consensus 479 ~l~s~s~d-----~~i~iwd~~~~~~~~~~~~---h~~~-v~~~~~~~~~~~~~l~s~s~dg-----~i~vwd~~~~~~~ 544 (1134)
+++.|+.+ +.+.++|+.+.+-...-.. .... -.+++. .++.+++.|+.++ .+..||+.+..-.
T Consensus 231 lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~---~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 231 LYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA---DEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred EEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE---ECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 55666654 3577888877654321110 0001 112221 1235667776543 3566776543321
Q ss_pred eeec---CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecC---CCCCceEEEEEcCCCCEEEEEeC
Q 001163 545 VDYD---APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG---LGKRSVGVVQFDTTKNRFLAAGD 618 (1134)
Q Consensus 545 ~~~~---~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~ 618 (1134)
.... .........+..-+++..+.++.++.....+.+||+.+.+....-.. .......++ ..-+++.++.|+.
T Consensus 308 ~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~ 386 (470)
T PLN02193 308 HCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGE 386 (470)
T ss_pred eCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCc
Confidence 1110 00011111111235677777665433334589999988765443211 111111222 2234567777774
Q ss_pred C--------------CeEEEEEcCCCcee
Q 001163 619 E--------------FMIKFWDMDNVNLL 633 (1134)
Q Consensus 619 d--------------g~i~iwd~~~~~~~ 633 (1134)
. ..+.+||..+.+..
T Consensus 387 ~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 387 IAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred cCCccccccCccceeccEEEEEcCcCEEE
Confidence 2 24788898877654
No 500
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=79.21 E-value=0.47 Score=51.99 Aligned_cols=139 Identities=16% Similarity=0.307 Sum_probs=95.9
Q ss_pred eCCCCCCcccccCCCC------CceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeecc
Q 001163 330 YTPQSLGQSSYSTDDL------PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELG 403 (1134)
Q Consensus 330 ~s~~~~~l~~~~~d~~------~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~ 403 (1134)
|-|.+..++....+.. .++.+..+.-.+.--.++|.-+|..+++.+-..+.+.+||+.+......
T Consensus 42 w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL--------- 112 (615)
T KOG2247|consen 42 WRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL--------- 112 (615)
T ss_pred EecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH---------
Confidence 4444444555443332 3444555556677778899999998888888899999999976542210
Q ss_pred ccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEE
Q 001163 404 ACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTC 483 (1134)
Q Consensus 404 ~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~ 483 (1134)
..-..|.... +.|++-+..++.|...|.+.|++..+.+... ....|...+++++|.+.+. .+.+
T Consensus 113 --------E~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vil~ 176 (615)
T KOG2247|consen 113 --------ESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VILC 176 (615)
T ss_pred --------hccCcchHHH--HhhccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccce---eeec
Confidence 0011222222 8899999999999999999999988765433 3444999999999999985 6788
Q ss_pred eCCCeEEEEE
Q 001163 484 GEDRVIKVWD 493 (1134)
Q Consensus 484 s~d~~i~iwd 493 (1134)
+.|..+.+-.
T Consensus 177 dcd~~L~v~~ 186 (615)
T KOG2247|consen 177 DCDNTLSVTT 186 (615)
T ss_pred CcHHHHHHhh
Confidence 8777665543
Done!