Query 001163
Match_columns 1134
No_of_seqs 869 out of 4420
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 14:17:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 4E-68 1.4E-72 647.4 78.1 565 351-1100 10-577 (577)
2 1nr0_A Actin interacting prote 100.0 4.5E-66 1.5E-70 629.4 72.1 576 355-1102 17-610 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 1.6E-65 5.4E-70 624.5 75.6 561 307-1048 8-577 (577)
4 1nr0_A Actin interacting prote 100.0 2.2E-64 7.7E-69 614.5 71.4 564 326-1050 22-610 (611)
5 3sfz_A APAF-1, apoptotic pepti 100.0 1.7E-63 5.7E-68 662.7 65.3 616 353-1103 612-1249(1249)
6 1pgu_A Actin interacting prote 100.0 7.2E-59 2.5E-63 570.9 67.7 557 355-1103 17-614 (615)
7 3sfz_A APAF-1, apoptotic pepti 100.0 2.2E-59 7.6E-64 623.1 61.7 578 311-1050 611-1248(1249)
8 1pgu_A Actin interacting prote 100.0 4.6E-57 1.6E-61 554.9 66.1 551 325-1051 21-614 (615)
9 2oaj_A Protein SNI1; WD40 repe 100.0 1.6E-56 5.4E-61 563.8 69.7 602 350-1061 11-793 (902)
10 2oaj_A Protein SNI1; WD40 repe 100.0 6.7E-55 2.3E-59 549.1 58.6 592 414-1111 13-791 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 4.5E-47 1.5E-51 482.2 58.5 476 350-1006 6-503 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 4.5E-45 1.5E-49 463.8 53.1 466 413-1048 8-502 (814)
13 1vyh_C Platelet-activating fac 100.0 3.8E-44 1.3E-48 413.4 40.2 284 354-671 106-409 (410)
14 3ow8_A WD repeat-containing pr 100.0 1E-38 3.4E-43 354.4 42.1 292 349-671 24-319 (321)
15 1got_B GT-beta; complex (GTP-b 100.0 2.5E-38 8.5E-43 355.2 45.8 292 348-670 46-340 (340)
16 2pbi_B Guanine nucleotide-bind 100.0 3E-38 1E-42 356.2 43.8 294 349-670 56-354 (354)
17 2ynn_A Coatomer subunit beta'; 100.0 6.8E-38 2.3E-42 345.5 42.4 291 349-673 5-302 (304)
18 3ow8_A WD repeat-containing pr 100.0 6.6E-38 2.3E-42 347.8 41.9 289 414-806 28-320 (321)
19 1vyh_C Platelet-activating fac 100.0 3.1E-38 1.1E-42 363.9 40.8 286 414-805 104-409 (410)
20 3frx_A Guanine nucleotide-bind 100.0 8.9E-38 3.1E-42 347.0 42.8 298 350-674 10-318 (319)
21 1got_B GT-beta; complex (GTP-b 100.0 2E-37 6.9E-42 347.8 43.8 286 414-804 51-340 (340)
22 4g56_B MGC81050 protein; prote 100.0 1.2E-38 3.9E-43 359.7 33.3 312 742-1105 19-345 (357)
23 3iz6_a 40S ribosomal protein R 100.0 3.2E-38 1.1E-42 360.1 35.9 302 347-674 56-376 (380)
24 4g56_B MGC81050 protein; prote 100.0 4.8E-38 1.6E-42 354.7 36.8 293 354-674 40-344 (357)
25 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.3E-37 1.1E-41 346.7 42.6 302 348-675 6-337 (345)
26 4gqb_B Methylosome protein 50; 100.0 1.1E-37 3.7E-42 348.4 38.1 297 355-674 29-332 (344)
27 4gqb_B Methylosome protein 50; 100.0 3.6E-38 1.2E-42 352.3 32.2 295 775-1105 29-333 (344)
28 1r5m_A SIR4-interacting protei 100.0 5.7E-37 1.9E-41 357.1 42.5 307 348-675 37-363 (425)
29 2ynn_A Coatomer subunit beta'; 100.0 1.5E-36 5.1E-41 334.7 41.7 255 413-681 8-266 (304)
30 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.5E-36 5.2E-41 341.2 41.5 211 414-672 11-224 (345)
31 2pbi_B Guanine nucleotide-bind 100.0 2.5E-36 8.4E-41 340.5 42.4 287 414-804 60-354 (354)
32 4ery_A WD repeat-containing pr 100.0 9.6E-36 3.3E-40 330.4 45.1 290 350-672 16-311 (312)
33 1r5m_A SIR4-interacting protei 100.0 3E-36 1E-40 351.0 42.4 348 415-915 42-424 (425)
34 3iz6_a 40S ribosomal protein R 100.0 5.1E-37 1.7E-41 350.3 34.2 295 414-807 62-375 (380)
35 1erj_A Transcriptional repress 100.0 5.4E-36 1.8E-40 343.5 42.8 309 348-673 56-389 (393)
36 2pm9_A Protein WEB1, protein t 100.0 1.7E-37 5.7E-42 360.5 30.4 298 353-674 9-338 (416)
37 1k32_A Tricorn protease; prote 100.0 4.1E-35 1.4E-39 379.3 55.3 524 355-1053 13-639 (1045)
38 3frx_A Guanine nucleotide-bind 100.0 2.1E-35 7.2E-40 327.9 44.8 296 413-806 12-316 (319)
39 2hes_X YDR267CP; beta-propelle 100.0 7.8E-36 2.7E-40 333.1 41.3 298 348-673 5-328 (330)
40 4ery_A WD repeat-containing pr 100.0 3E-35 1E-39 326.4 43.8 290 414-806 19-311 (312)
41 2xzm_R RACK1; ribosome, transl 100.0 1.4E-35 4.7E-40 333.5 40.4 299 349-674 13-341 (343)
42 1gxr_A ESG1, transducin-like e 100.0 2E-35 6.7E-40 332.1 41.0 286 355-674 8-297 (337)
43 4aow_A Guanine nucleotide-bind 100.0 5.3E-35 1.8E-39 329.1 42.7 302 348-675 29-339 (340)
44 1gxr_A ESG1, transducin-like e 100.0 9.4E-35 3.2E-39 326.5 44.4 317 324-671 11-335 (337)
45 2xzm_R RACK1; ribosome, transl 100.0 6.7E-35 2.3E-39 327.9 42.2 293 588-1053 12-342 (343)
46 2pm9_A Protein WEB1, protein t 100.0 1.1E-36 3.7E-41 353.6 28.1 338 600-1052 14-415 (416)
47 2hes_X YDR267CP; beta-propelle 100.0 1.3E-34 4.5E-39 323.2 41.4 306 586-1051 3-328 (330)
48 3vl1_A 26S proteasome regulato 100.0 1.5E-35 5.2E-40 344.4 34.5 283 358-674 58-366 (420)
49 3gre_A Serine/threonine-protei 100.0 6.1E-36 2.1E-40 349.6 30.5 357 415-955 60-437 (437)
50 1k32_A Tricorn protease; prote 100.0 1.8E-33 6.1E-38 364.0 54.6 530 417-1105 13-639 (1045)
51 3vl1_A 26S proteasome regulato 100.0 6.5E-35 2.2E-39 339.1 36.4 345 419-958 57-419 (420)
52 3dm0_A Maltose-binding peripla 100.0 4.1E-34 1.4E-38 354.2 42.9 296 351-672 376-692 (694)
53 1erj_A Transcriptional repress 100.0 1.1E-33 3.9E-38 324.1 42.9 243 416-674 62-342 (393)
54 3v7d_B Cell division control p 100.0 2.3E-33 7.9E-38 330.6 45.5 341 414-955 117-460 (464)
55 4aow_A Guanine nucleotide-bind 100.0 2.2E-33 7.4E-38 315.9 42.9 299 584-1053 25-339 (340)
56 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.5E-33 1.9E-37 325.1 47.5 321 354-807 116-442 (445)
57 2j04_B YDR362CP, TAU91; beta p 100.0 1.4E-35 4.6E-40 348.0 24.5 268 365-657 170-458 (524)
58 3ei3_B DNA damage-binding prot 100.0 6.6E-34 2.2E-38 325.9 37.9 295 348-673 64-382 (383)
59 2j04_B YDR362CP, TAU91; beta p 100.0 7.1E-35 2.4E-39 341.9 28.7 350 417-916 132-517 (524)
60 3v7d_B Cell division control p 100.0 8.1E-33 2.8E-37 325.9 46.4 347 588-1049 112-461 (464)
61 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.1E-32 3.7E-37 322.6 44.7 317 458-958 113-442 (445)
62 3zwl_B Eukaryotic translation 100.0 1.2E-32 4E-37 313.8 43.3 289 350-674 26-347 (369)
63 1sq9_A Antiviral protein SKI8; 100.0 3.1E-33 1.1E-37 322.2 36.9 299 350-674 9-396 (397)
64 4e54_B DNA damage-binding prot 100.0 7.5E-34 2.6E-38 330.7 31.6 294 353-674 116-431 (435)
65 3k26_A Polycomb protein EED; W 100.0 1.4E-33 4.9E-38 321.0 32.7 291 354-672 16-365 (366)
66 3odt_A Protein DOA1; ubiquitin 100.0 1.9E-32 6.6E-37 304.1 39.7 288 347-674 8-297 (313)
67 3ei3_B DNA damage-binding prot 100.0 5.3E-33 1.8E-37 318.3 35.7 308 581-1051 57-382 (383)
68 1k8k_C P40, ARP2/3 complex 41 100.0 3.4E-33 1.1E-37 318.8 33.7 290 355-676 7-364 (372)
69 4a11_B DNA excision repair pro 100.0 5E-33 1.7E-37 321.8 35.2 347 579-1103 25-405 (408)
70 3i2n_A WD repeat-containing pr 100.0 3.8E-33 1.3E-37 316.2 33.4 289 355-674 17-354 (357)
71 3gre_A Serine/threonine-protei 100.0 2.8E-33 9.6E-38 327.0 33.1 314 330-670 35-437 (437)
72 3zwl_B Eukaryotic translation 100.0 6.8E-32 2.3E-36 307.4 43.2 301 413-807 27-346 (369)
73 4h5i_A Guanine nucleotide-exch 100.0 5.3E-33 1.8E-37 314.2 33.1 305 353-675 11-345 (365)
74 1sq9_A Antiviral protein SKI8; 100.0 3.1E-32 1.1E-36 313.8 38.3 256 413-682 11-330 (397)
75 4e54_B DNA damage-binding prot 100.0 6E-33 2.1E-37 323.1 30.6 301 592-1055 114-434 (435)
76 3dm0_A Maltose-binding peripla 100.0 6.7E-32 2.3E-36 334.4 41.3 257 413-683 377-641 (694)
77 4h5i_A Guanine nucleotide-exch 100.0 2.7E-32 9.1E-37 308.5 34.0 203 842-1052 132-344 (365)
78 2pm7_B Protein transport prote 100.0 5.3E-32 1.8E-36 297.2 34.8 252 414-673 5-285 (297)
79 4aez_A CDC20, WD repeat-contai 100.0 1.2E-31 4.2E-36 308.6 38.8 287 358-677 95-384 (401)
80 3dwl_C Actin-related protein 2 100.0 1E-33 3.5E-38 323.7 21.1 286 355-671 10-377 (377)
81 3dwl_C Actin-related protein 2 100.0 4.2E-33 1.4E-37 318.6 26.0 294 775-1101 10-377 (377)
82 4gga_A P55CDC, cell division c 100.0 3.5E-31 1.2E-35 306.7 42.2 283 357-674 106-396 (420)
83 3k26_A Polycomb protein EED; W 100.0 9.6E-32 3.3E-36 305.8 34.6 250 413-674 13-319 (366)
84 1k8k_C P40, ARP2/3 complex 41 100.0 3.3E-31 1.1E-35 302.2 38.5 247 414-673 4-274 (372)
85 3i2n_A WD repeat-containing pr 100.0 2.1E-31 7.2E-36 301.9 35.6 252 413-674 13-292 (357)
86 2j04_A TAU60, YPL007P, hypothe 100.0 2.5E-32 8.6E-37 308.8 27.3 315 355-796 14-350 (588)
87 2pm7_B Protein transport prote 100.0 3E-31 1E-35 291.1 35.0 247 354-628 7-284 (297)
88 4ggc_A P55CDC, cell division c 100.0 2E-30 6.7E-35 288.6 42.1 282 359-674 28-316 (318)
89 3odt_A Protein DOA1; ubiquitin 100.0 1E-30 3.4E-35 290.2 39.1 240 413-674 13-256 (313)
90 2j04_A TAU60, YPL007P, hypothe 100.0 7.7E-33 2.6E-37 313.0 22.1 330 551-1040 15-350 (588)
91 4a11_B DNA excision repair pro 100.0 4.1E-31 1.4E-35 305.6 36.2 366 485-958 21-405 (408)
92 3dw8_B Serine/threonine-protei 100.0 3.1E-31 1.1E-35 310.9 33.8 300 353-671 25-444 (447)
93 4gga_A P55CDC, cell division c 100.0 1.2E-30 4.2E-35 302.2 37.8 291 770-1105 99-397 (420)
94 3bg1_A Protein SEC13 homolog; 100.0 1.7E-31 5.9E-36 295.9 28.3 251 413-673 8-293 (316)
95 3bg1_A Protein SEC13 homolog; 100.0 1.7E-31 5.7E-36 296.0 24.6 257 841-1111 11-300 (316)
96 1p22_A F-BOX/WD-repeat protein 100.0 2.9E-30 9.8E-35 300.7 35.5 272 355-674 132-415 (435)
97 2aq5_A Coronin-1A; WD40 repeat 100.0 1.5E-30 5.2E-35 299.8 32.6 296 358-674 36-343 (402)
98 4aez_A CDC20, WD repeat-contai 100.0 5.2E-30 1.8E-34 295.0 36.6 284 416-807 89-380 (401)
99 4ggc_A P55CDC, cell division c 100.0 7.2E-30 2.5E-34 284.0 36.6 283 778-1105 27-317 (318)
100 1yfq_A Cell cycle arrest prote 100.0 2.5E-30 8.4E-35 291.1 31.8 281 354-670 9-321 (342)
101 3mmy_A MRNA export factor; mRN 100.0 6E-30 2.1E-34 291.2 33.8 291 346-672 28-345 (368)
102 3jrp_A Fusion protein of prote 100.0 7.1E-30 2.4E-34 291.9 34.6 254 413-674 6-288 (379)
103 3f3f_A Nucleoporin SEH1; struc 100.0 2E-29 6.9E-34 284.4 35.5 253 413-674 6-338 (351)
104 3dw8_B Serine/threonine-protei 100.0 1.5E-29 5E-34 296.6 34.8 252 416-675 26-375 (447)
105 3mmy_A MRNA export factor; mRN 100.0 5.6E-29 1.9E-33 283.1 36.7 250 413-674 34-305 (368)
106 1p22_A F-BOX/WD-repeat protein 100.0 5.4E-29 1.9E-33 289.9 37.1 234 415-674 130-366 (435)
107 1yfq_A Cell cycle arrest prote 100.0 5.6E-29 1.9E-33 280.1 35.9 248 414-674 7-283 (342)
108 3f3f_A Nucleoporin SEH1; struc 100.0 6.8E-29 2.3E-33 280.0 33.3 261 354-637 9-345 (351)
109 3jrp_A Fusion protein of prote 100.0 9.6E-29 3.3E-33 282.5 33.9 254 354-634 9-292 (379)
110 2aq5_A Coronin-1A; WD40 repeat 100.0 8.3E-29 2.9E-33 285.3 31.6 249 419-675 35-301 (402)
111 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.5E-28 2.6E-32 281.6 37.2 300 357-674 5-392 (450)
112 3bws_A Protein LP49; two-domai 100.0 1.1E-26 3.9E-31 270.7 42.3 310 325-663 30-365 (433)
113 2w18_A PALB2, fancn, partner a 100.0 1.1E-27 3.9E-32 254.0 30.2 219 775-1049 110-355 (356)
114 2xyi_A Probable histone-bindin 100.0 1.2E-27 4.1E-32 277.7 33.1 266 349-630 121-411 (430)
115 3vu4_A KMHSV2; beta-propeller 100.0 1.6E-27 5.6E-32 268.4 32.7 276 355-674 18-337 (355)
116 3jro_A Fusion protein of prote 100.0 2.8E-28 9.4E-33 303.2 28.9 254 413-674 4-286 (753)
117 1l0q_A Surface layer protein; 100.0 2.3E-26 7.7E-31 264.1 42.5 279 369-685 2-286 (391)
118 2w18_A PALB2, fancn, partner a 100.0 1.2E-26 4E-31 246.2 36.5 293 466-956 42-355 (356)
119 3vu4_A KMHSV2; beta-propeller 100.0 4.4E-27 1.5E-31 264.9 34.1 295 581-1010 3-339 (355)
120 1l0q_A Surface layer protein; 100.0 7.8E-26 2.7E-30 259.6 44.8 328 479-994 4-364 (391)
121 3bws_A Protein LP49; two-domai 100.0 1.4E-26 4.8E-31 269.9 38.8 295 348-673 114-432 (433)
122 4gq1_A NUP37; propeller, trans 100.0 1.2E-27 4.2E-32 273.6 28.5 308 352-671 11-387 (393)
123 2xyi_A Probable histone-bindin 100.0 7.2E-27 2.5E-31 271.1 34.9 252 414-674 124-411 (430)
124 3jro_A Fusion protein of prote 100.0 2.2E-27 7.5E-32 295.0 31.5 260 841-1115 7-296 (753)
125 3lrv_A PRE-mRNA-splicing facto 100.0 1.3E-27 4.4E-32 268.5 25.9 198 842-1052 124-334 (343)
126 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.2E-26 7.6E-31 269.0 37.4 242 419-671 5-337 (450)
127 3lrv_A PRE-mRNA-splicing facto 100.0 6.8E-27 2.3E-31 262.6 28.1 270 363-674 43-334 (343)
128 1nir_A Nitrite reductase; hemo 99.9 1.4E-24 4.7E-29 257.0 42.6 276 363-674 144-459 (543)
129 4gq1_A NUP37; propeller, trans 99.9 1.7E-26 5.9E-31 264.1 25.4 247 355-627 88-387 (393)
130 1nir_A Nitrite reductase; hemo 99.9 3.9E-25 1.3E-29 261.7 35.6 340 559-1015 145-522 (543)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 6E-24 2.1E-28 244.2 31.0 284 357-674 63-388 (415)
132 2ecf_A Dipeptidyl peptidase IV 99.9 3.2E-23 1.1E-27 259.3 36.1 303 357-673 37-413 (741)
133 2hqs_A Protein TOLB; TOLB, PAL 99.9 3E-23 1E-27 238.4 30.2 307 462-940 61-410 (415)
134 2ecf_A Dipeptidyl peptidase IV 99.9 3.4E-22 1.2E-26 250.1 38.2 245 418-672 36-366 (741)
135 1xfd_A DIP, dipeptidyl aminope 99.9 5.7E-23 2E-27 256.4 26.7 287 358-673 18-393 (723)
136 1xfd_A DIP, dipeptidyl aminope 99.9 2.8E-22 9.5E-27 250.2 30.2 381 553-1054 18-446 (723)
137 3u4y_A Uncharacterized protein 99.9 3.8E-21 1.3E-25 214.8 36.3 280 362-674 3-305 (331)
138 2z3z_A Dipeptidyl aminopeptida 99.9 6E-21 2E-25 237.2 37.9 238 420-672 27-341 (706)
139 3vgz_A Uncharacterized protein 99.9 2E-20 6.7E-25 211.1 35.8 279 350-664 34-335 (353)
140 2z3z_A Dipeptidyl aminopeptida 99.9 4.3E-21 1.5E-25 238.5 32.1 284 776-1105 81-437 (706)
141 3u4y_A Uncharacterized protein 99.9 9.9E-21 3.4E-25 211.4 29.5 287 783-1108 4-309 (331)
142 1ri6_A Putative isomerase YBHE 99.9 1.2E-20 4.1E-25 211.8 27.8 250 842-1110 36-315 (343)
143 1ri6_A Putative isomerase YBHE 99.9 1.2E-19 4E-24 203.8 35.5 274 368-672 4-307 (343)
144 2ojh_A Uncharacterized protein 99.9 1.6E-20 5.5E-25 205.7 25.5 257 374-664 17-293 (297)
145 3vgz_A Uncharacterized protein 99.9 1.4E-19 4.7E-24 204.1 33.4 273 776-1094 40-335 (353)
146 1pby_B Quinohemoprotein amine 99.9 1.8E-19 6.2E-24 201.6 29.7 278 371-683 3-319 (337)
147 1pby_B Quinohemoprotein amine 99.9 3.4E-19 1.2E-23 199.3 31.8 302 522-927 2-321 (337)
148 3hfq_A Uncharacterized protein 99.8 2.7E-19 9.2E-24 201.1 29.2 250 842-1107 38-321 (347)
149 2ojh_A Uncharacterized protein 99.8 9.3E-20 3.2E-24 199.6 23.3 233 842-1094 40-293 (297)
150 1z68_A Fibroblast activation p 99.8 7.6E-20 2.6E-24 227.7 25.2 328 603-1058 20-450 (719)
151 2oit_A Nucleoporin 214KDA; NH2 99.8 2E-18 7E-23 198.5 34.7 314 776-1103 36-405 (434)
152 1z68_A Fibroblast activation p 99.8 1.5E-19 5.2E-24 224.9 27.2 285 779-1105 62-445 (719)
153 3o4h_A Acylamino-acid-releasin 99.8 1.5E-19 5.1E-24 218.8 25.5 272 356-671 21-313 (582)
154 2oit_A Nucleoporin 214KDA; NH2 99.8 1.1E-18 3.7E-23 200.8 30.4 261 356-628 36-332 (434)
155 3o4h_A Acylamino-acid-releasin 99.8 8.8E-19 3E-23 212.0 27.6 237 417-671 20-274 (582)
156 3hfq_A Uncharacterized protein 99.8 4.3E-17 1.5E-21 183.1 38.0 246 416-672 37-316 (347)
157 4a5s_A Dipeptidyl peptidase 4 99.8 6.9E-18 2.4E-22 209.7 33.8 275 358-674 18-354 (740)
158 3pe7_A Oligogalacturonate lyas 99.8 9E-18 3.1E-22 192.0 29.1 297 350-672 23-381 (388)
159 1jmx_B Amine dehydrogenase; ox 99.8 1.3E-17 4.5E-22 187.4 29.9 283 361-683 4-334 (349)
160 3scy_A Hypothetical bacterial 99.8 1.3E-16 4.5E-21 180.1 38.1 308 610-1029 13-360 (361)
161 4a5s_A Dipeptidyl peptidase 4 99.8 4.1E-17 1.4E-21 202.7 37.0 330 600-1058 18-456 (740)
162 1jmx_B Amine dehydrogenase; ox 99.8 2.5E-17 8.4E-22 185.2 30.7 253 346-639 30-335 (349)
163 3scy_A Hypothetical bacterial 99.8 2.5E-16 8.7E-21 177.8 37.7 272 371-672 15-336 (361)
164 3pe7_A Oligogalacturonate lyas 99.8 9.4E-18 3.2E-22 191.8 25.1 254 414-674 26-330 (388)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.9E-16 6.5E-21 178.8 30.0 248 417-674 38-342 (365)
166 1jof_A Carboxy-CIS,CIS-muconat 99.8 5.6E-16 1.9E-20 174.9 33.4 270 579-959 16-342 (365)
167 2oiz_A Aromatic amine dehydrog 99.7 1.2E-15 4E-20 171.2 33.7 219 845-1082 109-358 (361)
168 2oiz_A Aromatic amine dehydrog 99.7 1.2E-15 4.1E-20 171.1 31.9 303 529-940 29-360 (361)
169 3c5m_A Oligogalacturonate lyas 99.7 4.2E-16 1.4E-20 178.6 27.7 282 359-671 38-380 (396)
170 3c5m_A Oligogalacturonate lyas 99.7 4.1E-16 1.4E-20 178.7 24.0 306 554-1012 38-389 (396)
171 2gop_A Trilobed protease; beta 99.7 1.1E-14 3.8E-19 163.3 29.8 273 357-685 15-340 (347)
172 1q7f_A NHL, brain tumor CG1071 99.7 2.2E-14 7.6E-19 155.8 30.7 241 842-1103 28-280 (286)
173 3fvz_A Peptidyl-glycine alpha- 99.7 6.1E-15 2.1E-19 163.5 26.6 252 843-1105 23-324 (329)
174 1qks_A Cytochrome CD1 nitrite 99.7 2.1E-13 7.3E-18 160.3 41.0 332 518-1015 164-546 (567)
175 1qks_A Cytochrome CD1 nitrite 99.7 7E-13 2.4E-17 155.9 43.6 275 369-674 167-478 (567)
176 3azo_A Aminopeptidase; POP fam 99.7 1.7E-14 5.7E-19 177.6 30.5 253 412-672 17-322 (662)
177 4a2l_A BT_4663, two-component 99.7 9.4E-10 3.2E-14 137.6 73.0 586 356-1103 42-659 (795)
178 4a2l_A BT_4663, two-component 99.6 1.5E-10 5.2E-15 144.8 65.2 534 356-1049 87-657 (795)
179 3azo_A Aminopeptidase; POP fam 99.6 2.1E-14 7.1E-19 176.7 28.5 286 354-674 21-370 (662)
180 3fvz_A Peptidyl-glycine alpha- 99.6 9.9E-14 3.4E-18 153.8 30.0 245 357-629 24-322 (329)
181 1q7f_A NHL, brain tumor CG1071 99.6 3.6E-13 1.2E-17 146.2 33.2 245 415-673 26-280 (286)
182 2xdw_A Prolyl endopeptidase; a 99.6 2.9E-13 1E-17 167.2 34.0 250 415-675 121-416 (710)
183 2dg1_A DRP35, lactonase; beta 99.6 3E-13 1E-17 150.5 29.2 273 357-664 6-301 (333)
184 2gop_A Trilobed protease; beta 99.6 1.6E-12 5.3E-17 145.7 33.7 255 530-929 42-342 (347)
185 3v9f_A Two-component system se 99.6 1.3E-08 4.5E-13 126.9 71.7 594 356-1104 18-657 (781)
186 3dsm_A Uncharacterized protein 99.6 1E-12 3.4E-17 145.3 29.0 279 376-682 14-309 (328)
187 2xdw_A Prolyl endopeptidase; a 99.6 6E-13 2E-17 164.5 29.5 247 357-631 125-416 (710)
188 2dg1_A DRP35, lactonase; beta 99.5 1.1E-12 3.9E-17 145.8 28.5 241 419-672 6-262 (333)
189 2bkl_A Prolyl endopeptidase; m 99.5 4.8E-13 1.6E-17 164.7 27.9 249 415-675 117-399 (695)
190 3v9f_A Two-component system se 99.5 7E-09 2.4E-13 129.4 66.0 540 357-1051 66-656 (781)
191 3e5z_A Putative gluconolactona 99.5 2.2E-12 7.7E-17 140.6 29.9 241 355-632 26-289 (296)
192 2z2n_A Virginiamycin B lyase; 99.5 4.1E-11 1.4E-15 130.8 39.8 282 355-674 13-296 (299)
193 3dsm_A Uncharacterized protein 99.5 1.3E-12 4.6E-17 144.3 26.9 243 844-1110 44-308 (328)
194 2bkl_A Prolyl endopeptidase; m 99.5 2.6E-13 8.8E-18 167.2 22.9 241 842-1106 119-400 (695)
195 2mad_H Methylamine dehydrogena 99.5 2.8E-11 9.6E-16 135.3 37.1 203 847-1058 128-357 (373)
196 2z2n_A Virginiamycin B lyase; 99.5 7E-11 2.4E-15 128.9 39.7 280 551-959 14-296 (299)
197 3e5z_A Putative gluconolactona 99.5 3E-12 1E-16 139.6 28.0 237 414-673 23-286 (296)
198 3no2_A Uncharacterized protein 99.5 7.7E-12 2.6E-16 133.7 28.5 243 371-649 7-272 (276)
199 3sjl_D Methylamine dehydrogena 99.5 1.2E-11 4.1E-16 135.5 29.5 248 782-1061 83-373 (386)
200 1rwi_B Serine/threonine-protei 99.5 6.1E-12 2.1E-16 135.1 27.0 240 845-1106 25-267 (270)
201 3no2_A Uncharacterized protein 99.5 3.3E-12 1.1E-16 136.5 24.1 248 854-1116 4-265 (276)
202 2mad_H Methylamine dehydrogena 99.5 1.2E-10 4.1E-15 130.2 37.3 278 364-680 28-356 (373)
203 1yr2_A Prolyl oligopeptidase; 99.5 4.4E-12 1.5E-16 157.3 28.1 247 415-674 159-442 (741)
204 1rwi_B Serine/threonine-protei 99.5 9.6E-12 3.3E-16 133.5 26.3 241 358-632 25-267 (270)
205 3sjl_D Methylamine dehydrogena 99.5 2.3E-11 8E-16 133.3 29.4 283 343-653 65-384 (386)
206 2qc5_A Streptogramin B lactona 99.4 4.2E-10 1.4E-14 122.7 38.5 279 355-671 18-298 (300)
207 3c75_H MADH, methylamine dehyd 99.4 3.8E-11 1.3E-15 134.3 29.2 205 847-1058 180-409 (426)
208 2qc5_A Streptogramin B lactona 99.4 1E-09 3.4E-14 119.7 37.7 277 551-956 19-298 (300)
209 1yr2_A Prolyl oligopeptidase; 99.4 3.2E-11 1.1E-15 149.5 27.4 245 357-631 163-443 (741)
210 3c75_H MADH, methylamine dehyd 99.4 1.2E-10 4.2E-15 130.2 27.3 279 366-681 82-409 (426)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 1.6E-10 5.3E-15 127.2 26.3 245 777-1051 18-299 (314)
212 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 3.7E-10 1.3E-14 124.1 27.6 243 418-673 17-299 (314)
213 3iuj_A Prolyl endopeptidase; h 99.3 4.8E-10 1.6E-14 137.5 28.9 249 357-633 129-409 (693)
214 2qe8_A Uncharacterized protein 99.3 2.1E-10 7.1E-15 127.6 22.6 273 357-666 17-314 (343)
215 3g4e_A Regucalcin; six bladed 99.3 1.2E-09 4.1E-14 118.7 26.6 229 777-1040 13-261 (297)
216 3g4e_A Regucalcin; six bladed 99.2 2E-09 6.9E-14 116.9 27.3 227 358-618 14-261 (297)
217 3hrp_A Uncharacterized protein 99.2 3.8E-09 1.3E-13 119.9 30.4 240 357-627 131-408 (409)
218 3hrp_A Uncharacterized protein 99.2 4E-09 1.4E-13 119.7 30.5 239 419-671 131-408 (409)
219 3dr2_A Exported gluconolactona 99.2 2E-09 6.8E-14 117.5 26.8 230 355-621 43-299 (305)
220 4a0p_A LRP6, LRP-6, low-densit 99.2 2.5E-05 8.6E-10 92.9 64.4 531 432-1058 8-556 (628)
221 2qe8_A Uncharacterized protein 99.2 2.3E-10 7.8E-15 127.3 18.9 273 777-1099 17-317 (343)
222 3iuj_A Prolyl endopeptidase; h 99.2 6.1E-10 2.1E-14 136.5 24.3 245 415-674 125-406 (693)
223 1mda_H Methylamine dehydrogena 99.2 3.6E-10 1.2E-14 124.5 19.7 242 781-1061 69-356 (368)
224 1kb0_A Quinohemoprotein alcoho 99.2 6.9E-09 2.4E-13 125.7 32.0 193 479-676 79-349 (677)
225 1xip_A Nucleoporin NUP159; bet 99.2 3.7E-10 1.3E-14 124.5 18.6 183 358-570 39-232 (388)
226 1xip_A Nucleoporin NUP159; bet 99.2 1.7E-10 5.9E-15 127.1 15.9 173 844-1037 38-230 (388)
227 2ghs_A AGR_C_1268P; regucalcin 99.2 1.2E-08 4.2E-13 112.3 29.3 223 359-618 51-291 (326)
228 1yiq_A Quinohemoprotein alcoho 99.2 5.1E-09 1.7E-13 127.1 28.4 79 864-944 455-534 (689)
229 1kb0_A Quinohemoprotein alcoho 99.2 5.4E-09 1.8E-13 126.6 28.4 203 888-1103 246-567 (677)
230 1mda_H Methylamine dehydrogena 99.1 2.7E-09 9.3E-14 117.5 22.6 268 370-682 33-354 (368)
231 3s94_A LRP-6, low-density lipo 99.1 2.2E-05 7.4E-10 93.4 57.8 524 439-1053 17-553 (619)
232 1yiq_A Quinohemoprotein alcoho 99.1 7.7E-09 2.6E-13 125.6 28.5 192 889-1092 239-538 (689)
233 2ghs_A AGR_C_1268P; regucalcin 99.1 2.9E-08 1E-12 109.2 30.6 224 421-663 51-292 (326)
234 3q7m_A Lipoprotein YFGL, BAMB; 99.1 9.3E-08 3.2E-12 107.9 33.9 149 479-638 55-216 (376)
235 3dr2_A Exported gluconolactona 99.1 2.6E-08 8.9E-13 108.6 26.9 233 417-667 43-301 (305)
236 3q7m_A Lipoprotein YFGL, BAMB; 99.0 2.4E-07 8.2E-12 104.5 33.1 224 429-674 52-297 (376)
237 3hxj_A Pyrrolo-quinoline quino 99.0 1.5E-08 5E-13 112.2 22.6 177 469-670 25-201 (330)
238 2ece_A 462AA long hypothetical 99.0 5.1E-08 1.7E-12 107.1 26.0 233 850-1091 88-399 (462)
239 2ece_A 462AA long hypothetical 99.0 2.4E-07 8.3E-12 101.7 29.2 266 336-617 44-399 (462)
240 3hxj_A Pyrrolo-quinoline quino 99.0 1.9E-08 6.3E-13 111.3 20.9 259 361-671 24-282 (330)
241 3s94_A LRP-6, low-density lipo 99.0 0.00011 3.6E-09 87.5 54.0 209 354-590 37-247 (619)
242 1fwx_A Nitrous oxide reductase 99.0 6E-08 2.1E-12 110.5 24.1 272 561-960 99-433 (595)
243 2hz6_A Endoplasmic reticulum t 98.9 3.4E-10 1.2E-14 126.9 3.6 186 854-1059 8-200 (369)
244 1fwx_A Nitrous oxide reductase 98.9 4.4E-08 1.5E-12 111.6 20.7 238 853-1107 99-435 (595)
245 2hz6_A Endoplasmic reticulum t 98.9 1.2E-09 4E-14 122.5 6.9 190 429-638 8-201 (369)
246 3ei3_A DNA damage-binding prot 98.9 0.00085 2.9E-08 85.2 62.5 574 421-1103 329-999 (1158)
247 1kv9_A Type II quinohemoprotei 98.8 1.3E-06 4.3E-11 105.8 29.4 81 864-946 438-520 (668)
248 1kv9_A Type II quinohemoprotei 98.8 2.5E-06 8.6E-11 103.2 32.0 169 889-1061 234-498 (668)
249 3ei3_A DNA damage-binding prot 98.8 0.0017 5.8E-08 82.5 64.8 624 357-1102 327-1061(1158)
250 4a0p_A LRP6, LRP-6, low-densit 98.8 0.00099 3.4E-08 79.2 66.6 533 370-1015 8-557 (628)
251 1npe_A Nidogen, entactin; glyc 98.8 1.9E-05 6.4E-10 83.8 33.9 224 419-655 36-263 (267)
252 2iwa_A Glutamine cyclotransfer 98.7 1.4E-06 4.8E-11 90.1 22.4 217 874-1105 9-239 (266)
253 2iwa_A Glutamine cyclotransfer 98.7 1.6E-06 5.5E-11 89.7 22.7 201 845-1053 22-239 (266)
254 1w6s_A Methanol dehydrogenase 98.7 8.1E-06 2.8E-10 96.2 30.1 167 889-1060 245-512 (599)
255 1npe_A Nidogen, entactin; glyc 98.6 6.3E-05 2.2E-09 79.6 32.9 242 431-682 2-246 (267)
256 2ad6_A Methanol dehydrogenase 98.6 1.1E-05 3.8E-10 95.3 28.7 85 905-997 442-526 (571)
257 3ott_A Two-component system se 98.6 0.0046 1.6E-07 76.3 72.6 572 356-1103 21-626 (758)
258 3nol_A Glutamine cyclotransfer 98.6 2.4E-06 8.2E-11 87.0 19.4 184 845-1040 44-244 (262)
259 3ott_A Two-component system se 98.6 0.0052 1.8E-07 75.9 59.1 529 356-1050 62-625 (758)
260 2ad6_A Methanol dehydrogenase 98.6 3.4E-05 1.2E-09 91.1 31.7 192 479-676 64-338 (571)
261 1w6s_A Methanol dehydrogenase 98.6 2.3E-05 7.8E-10 92.3 29.6 76 864-942 453-530 (599)
262 2xe4_A Oligopeptidase B; hydro 98.5 9.3E-06 3.2E-10 99.9 27.0 248 358-632 175-461 (751)
263 1flg_A Protein (quinoprotein e 98.5 7.8E-05 2.7E-09 88.1 33.7 195 480-678 71-360 (582)
264 3nol_A Glutamine cyclotransfer 98.5 8.8E-06 3E-10 82.9 20.8 182 466-662 45-244 (262)
265 3nok_A Glutaminyl cyclase; bet 98.5 3.2E-06 1.1E-10 86.0 17.3 206 875-1097 44-260 (268)
266 3nok_A Glutaminyl cyclase; bet 98.5 6.3E-06 2.2E-10 83.8 19.1 185 844-1040 55-254 (268)
267 2fp8_A Strictosidine synthase; 98.5 3.3E-05 1.1E-09 84.5 25.7 237 846-1105 21-315 (322)
268 1k3i_A Galactose oxidase precu 98.4 3.9E-05 1.3E-09 93.1 28.1 280 360-662 189-530 (656)
269 2p4o_A Hypothetical protein; p 98.4 0.00015 5.2E-09 78.4 30.1 226 777-1042 32-279 (306)
270 3mbr_X Glutamine cyclotransfer 98.4 9.2E-05 3.1E-09 74.8 25.1 211 875-1101 10-233 (243)
271 2fp8_A Strictosidine synthase; 98.4 5.9E-05 2E-09 82.5 26.2 252 778-1051 20-313 (322)
272 2p4o_A Hypothetical protein; p 98.4 0.00032 1.1E-08 75.9 31.7 239 345-619 20-278 (306)
273 1flg_A Protein (quinoprotein e 98.4 0.00012 4.2E-09 86.4 30.2 204 430-638 68-364 (582)
274 3mbr_X Glutamine cyclotransfer 98.4 5.3E-05 1.8E-09 76.5 22.5 188 843-1040 20-223 (243)
275 2xbg_A YCF48-like protein; pho 98.3 0.0012 4E-08 72.0 33.2 278 777-1101 36-320 (327)
276 3v64_C Agrin; beta propeller, 98.3 0.0027 9.1E-08 69.8 35.0 248 357-637 34-283 (349)
277 1ijq_A LDL receptor, low-densi 98.2 0.0012 4.1E-08 71.5 31.3 206 843-1058 29-245 (316)
278 2xe4_A Oligopeptidase B; hydro 98.2 7.2E-05 2.4E-09 92.0 23.9 195 845-1049 175-398 (751)
279 1ijq_A LDL receptor, low-densi 98.2 0.0024 8.4E-08 69.0 33.5 232 432-674 3-239 (316)
280 3v65_B Low-density lipoprotein 98.2 0.0019 6.6E-08 72.1 33.1 247 358-637 78-326 (386)
281 1k3i_A Galactose oxidase precu 98.2 0.0001 3.5E-09 89.3 23.6 237 844-1092 243-530 (656)
282 3v64_C Agrin; beta propeller, 98.2 0.0019 6.4E-08 71.0 31.8 241 420-674 35-276 (349)
283 2xbg_A YCF48-like protein; pho 98.2 0.0076 2.6E-07 65.5 36.2 282 354-670 33-319 (327)
284 3v65_B Low-density lipoprotein 98.2 0.0016 5.5E-08 72.7 31.3 240 421-674 79-319 (386)
285 4hw6_A Hypothetical protein, I 98.1 0.00036 1.2E-08 79.1 25.3 248 845-1102 140-432 (433)
286 3tc9_A Hypothetical hydrolase; 98.1 0.00046 1.6E-08 78.3 25.7 246 845-1102 138-429 (430)
287 3qqz_A Putative uncharacterize 98.1 0.0012 4.2E-08 67.7 26.1 191 356-569 26-241 (255)
288 3p5b_L Low density lipoprotein 98.1 0.0071 2.4E-07 67.7 34.3 232 432-674 85-321 (400)
289 3qqz_A Putative uncharacterize 98.0 0.0011 3.6E-08 68.2 24.4 203 842-1050 25-252 (255)
290 3p5b_L Low density lipoprotein 98.0 0.004 1.4E-07 69.8 31.2 207 843-1059 111-328 (400)
291 3amr_A 3-phytase; beta-propell 97.9 0.002 6.9E-08 68.5 23.4 197 854-1059 39-272 (355)
292 3tc9_A Hypothetical hydrolase; 97.8 0.0024 8.2E-08 72.3 24.6 240 419-671 137-428 (430)
293 4hw6_A Hypothetical protein, I 97.8 0.0048 1.7E-07 69.8 26.7 240 419-671 139-431 (433)
294 3sov_A LRP-6, low-density lipo 97.8 0.03 1E-06 60.2 31.0 210 419-637 35-246 (318)
295 3sov_A LRP-6, low-density lipo 97.7 0.028 9.5E-07 60.5 30.5 227 439-675 12-240 (318)
296 3m0c_C LDL receptor, low-densi 97.7 0.027 9.2E-07 68.4 33.4 232 432-674 397-633 (791)
297 3kya_A Putative phosphatase; s 97.7 0.0064 2.2E-07 68.7 25.4 252 778-1055 140-479 (496)
298 3m0c_C LDL receptor, low-densi 97.7 0.033 1.1E-06 67.7 33.0 213 418-637 423-640 (791)
299 1n7d_A LDL receptor, low-densi 97.7 0.00018 6E-09 87.1 13.1 206 844-1059 406-622 (699)
300 3amr_A 3-phytase; beta-propell 97.7 0.015 5.3E-07 61.8 26.0 195 479-682 42-272 (355)
301 3kya_A Putative phosphatase; s 97.6 0.025 8.4E-07 64.0 28.5 245 420-674 140-476 (496)
302 2xzh_A Clathrin heavy chain 1; 97.5 0.13 4.5E-06 53.5 30.7 232 847-1103 70-332 (365)
303 2xzh_A Clathrin heavy chain 1; 97.5 0.14 4.6E-06 53.4 31.8 261 379-674 49-333 (365)
304 2p9w_A MAL S 1 allergenic prot 97.4 0.0098 3.3E-07 62.7 20.5 201 846-1051 15-265 (334)
305 1n7d_A LDL receptor, low-densi 97.4 0.0015 5.1E-08 79.0 15.9 232 439-681 385-621 (699)
306 3a9g_A Putative uncharacterize 97.3 0.053 1.8E-06 59.3 25.7 228 844-1091 29-330 (354)
307 1bpo_A Protein (clathrin); cla 97.2 0.35 1.2E-05 52.4 33.5 261 379-674 48-332 (494)
308 2ism_A Putative oxidoreductase 97.2 0.076 2.6E-06 58.1 25.6 197 845-1053 32-299 (352)
309 2ism_A Putative oxidoreductase 97.1 0.064 2.2E-06 58.7 24.1 229 420-661 32-333 (352)
310 2g8s_A Glucose/sorbosone dehyd 97.1 0.059 2E-06 59.0 23.3 239 845-1101 19-350 (353)
311 2vpj_A Kelch-like protein 12; 97.0 0.056 1.9E-06 57.7 22.0 195 429-633 62-282 (301)
312 3ii7_A Kelch-like protein 7; p 97.0 0.16 5.6E-06 54.2 25.6 236 369-634 12-277 (306)
313 2p9w_A MAL S 1 allergenic prot 97.0 0.097 3.3E-06 55.2 22.3 161 360-540 16-215 (334)
314 3das_A Putative oxidoreductase 97.0 0.31 1.1E-05 52.4 26.6 201 844-1053 32-294 (347)
315 3ii7_A Kelch-like protein 7; p 97.0 0.11 3.7E-06 55.6 23.6 232 431-674 13-273 (306)
316 2vpj_A Kelch-like protein 12; 96.9 0.059 2E-06 57.6 21.0 234 429-674 14-279 (301)
317 3a9g_A Putative uncharacterize 96.9 0.38 1.3E-05 52.5 27.6 231 419-661 29-330 (354)
318 2xn4_A Kelch-like protein 2; s 96.9 0.077 2.6E-06 56.7 21.7 234 429-674 15-277 (302)
319 3pbp_A Nucleoporin NUP82; beta 96.9 0.026 8.9E-07 61.2 17.1 152 848-1002 25-207 (452)
320 3sre_A PON1, serum paraoxonase 96.8 0.063 2.2E-06 58.0 20.2 203 845-1059 51-308 (355)
321 1bpo_A Protein (clathrin); cla 96.8 0.77 2.6E-05 49.8 33.0 261 576-960 47-333 (494)
322 2xtc_A F-box-like/WD repeat-co 96.8 0.00093 3.2E-08 53.9 3.8 36 1-36 1-36 (90)
323 2xn4_A Kelch-like protein 2; s 96.7 0.13 4.4E-06 54.9 21.2 194 429-632 61-279 (302)
324 2g8s_A Glucose/sorbosone dehyd 96.6 0.74 2.5E-05 50.1 27.1 232 420-660 19-340 (353)
325 3pbp_A Nucleoporin NUP82; beta 96.6 0.083 2.8E-06 57.3 18.0 149 896-1046 31-207 (452)
326 3das_A Putative oxidoreductase 96.5 1.1 3.9E-05 48.0 30.9 99 846-946 204-326 (347)
327 4asc_A Kelch repeat and BTB do 96.5 0.22 7.5E-06 53.5 22.0 230 432-674 7-278 (315)
328 3sre_A PON1, serum paraoxonase 96.5 1.3 4.3E-05 47.8 29.0 207 420-637 51-308 (355)
329 4asc_A Kelch repeat and BTB do 96.5 0.67 2.3E-05 49.6 25.5 235 371-635 7-283 (315)
330 1zgk_A Kelch-like ECH-associat 96.4 0.23 7.9E-06 53.1 21.2 233 428-674 23-288 (308)
331 1cru_A Protein (soluble quinop 96.4 0.81 2.8E-05 51.6 26.0 104 844-947 27-163 (454)
332 1zgk_A Kelch-like ECH-associat 96.3 0.29 9.8E-06 52.3 21.4 234 852-1112 22-294 (308)
333 2be1_A Serine/threonine-protei 96.3 0.013 4.3E-07 62.8 10.2 202 898-1108 11-236 (339)
334 2woz_A Kelch repeat and BTB do 96.0 0.89 3E-05 48.7 23.3 200 425-635 52-293 (318)
335 1xi4_A Clathrin heavy chain; a 95.9 0.22 7.5E-06 62.4 19.1 199 848-1059 70-297 (1630)
336 2uvk_A YJHT; unknown function, 95.9 0.42 1.4E-05 52.3 20.4 242 854-1115 19-352 (357)
337 2woz_A Kelch repeat and BTB do 95.8 0.61 2.1E-05 50.0 20.7 230 432-674 18-288 (318)
338 3s25_A Hypothetical 7-bladed b 95.8 2 6.7E-05 45.4 24.0 174 849-1052 58-256 (302)
339 1tl2_A L10, protein (tachylect 95.8 0.12 4E-06 50.6 12.9 144 896-1050 3-162 (236)
340 1tl2_A L10, protein (tachylect 95.5 0.087 3E-06 51.5 11.1 146 885-1042 41-201 (236)
341 1uuj_A Platelet-activating fac 95.4 0.012 3.9E-07 47.3 3.5 56 5-60 10-67 (88)
342 3sbq_A Nitrous-oxide reductase 95.3 0.59 2E-05 52.4 18.0 101 843-946 322-453 (638)
343 2be1_A Serine/threonine-protei 94.9 0.44 1.5E-05 50.9 15.4 196 857-1056 12-236 (339)
344 2uvk_A YJHT; unknown function, 94.9 1.8 6.3E-05 47.0 21.3 147 487-639 168-352 (357)
345 1xi4_A Clathrin heavy chain; a 94.7 1.7 5.9E-05 54.7 21.5 259 379-674 48-332 (1630)
346 3s25_A Hypothetical 7-bladed b 93.9 7.4 0.00025 40.9 25.5 181 361-587 57-256 (302)
347 1cru_A Protein (soluble quinop 93.4 7.5 0.00026 43.7 22.5 110 928-1040 27-163 (454)
348 3qhy_B Beta-lactamase inhibito 93.2 3.6 0.00012 42.8 18.3 222 845-1103 25-246 (282)
349 2wg3_C Hedgehog-interacting pr 92.2 18 0.0006 40.6 27.8 55 420-474 15-79 (463)
350 2zwa_A Leucine carboxyl methyl 92.2 5.8 0.0002 47.5 20.6 197 853-1055 396-639 (695)
351 3b7f_A Glycosyl hydrolase, BNR 91.3 20 0.00067 39.3 24.7 259 843-1111 54-378 (394)
352 2wg3_C Hedgehog-interacting pr 90.5 26 0.00088 39.3 26.6 54 600-653 15-79 (463)
353 2zwa_A Leucine carboxyl methyl 90.1 11 0.00036 45.3 20.0 196 473-674 396-636 (695)
354 3qhy_B Beta-lactamase inhibito 89.5 19 0.00064 37.3 19.0 184 845-1052 64-247 (282)
355 4hvt_A Ritya.17583.B, post-pro 88.0 50 0.0017 39.3 27.4 243 361-628 133-429 (711)
356 3no0_A DNA gyrase subunit A; D 87.3 29 0.00098 35.7 20.9 194 898-1103 36-246 (276)
357 4hvt_A Ritya.17583.B, post-pro 86.7 27 0.00094 41.5 20.1 243 422-672 132-429 (711)
358 3sbq_A Nitrous-oxide reductase 82.4 71 0.0024 36.1 24.6 235 433-673 73-408 (638)
359 2nxp_A Transcription initiatio 81.9 2.8 9.5E-05 38.8 6.8 64 67-131 48-111 (156)
360 3q6k_A 43.2 kDa salivary prote 81.0 65 0.0022 34.7 25.0 185 441-658 124-339 (381)
361 3q6k_A 43.2 kDa salivary prote 80.8 66 0.0022 34.6 21.1 156 864-1051 123-306 (381)
362 2j4b_A TAF5, transcription ini 79.3 1.4 4.9E-05 39.7 3.8 58 67-126 29-86 (138)
363 2j49_A Transcription initiatio 76.6 1.5 5.1E-05 40.0 3.1 31 67-99 31-61 (148)
364 3kci_A Probable E3 ubiquitin-p 75.5 96 0.0033 33.6 23.5 204 886-1102 106-344 (389)
365 3uc1_A DNA gyrase subunit A; D 72.0 1E+02 0.0035 32.4 25.8 158 843-1007 94-279 (327)
366 4gq2_M Nucleoporin NUP120; bet 71.9 1.6E+02 0.0053 36.5 20.7 37 465-503 237-273 (950)
367 3uc1_A DNA gyrase subunit A; D 71.8 1E+02 0.0036 32.4 25.9 166 884-1055 94-283 (327)
368 3b7f_A Glycosyl hydrolase, BNR 70.4 1.2E+02 0.0042 32.7 29.7 235 419-667 55-366 (394)
369 2wpv_A GET4, UPF0363 protein Y 69.0 29 0.001 36.1 11.1 111 38-187 17-128 (312)
370 1wp5_A Topoisomerase IV; broke 64.3 1.4E+02 0.0049 31.2 25.0 203 844-1052 39-278 (323)
371 4gq2_M Nucleoporin NUP120; bet 63.6 21 0.00071 44.4 10.3 39 1021-1059 236-274 (950)
372 4gco_A Protein STI-1; structur 59.6 39 0.0013 29.5 8.9 98 15-119 23-125 (126)
373 3lpz_A GET4 (YOR164C homolog); 59.0 55 0.0019 34.4 10.8 110 38-186 16-129 (336)
374 3no0_A DNA gyrase subunit A; D 57.7 1.7E+02 0.0058 29.8 22.9 197 848-1055 29-250 (276)
375 2zux_A YESW protein; beta-prop 54.4 2.8E+02 0.0095 31.3 25.8 180 462-653 177-424 (591)
376 3zwu_A Alkaline phosphatase PH 50.6 29 0.00098 40.0 7.8 59 979-1039 477-549 (592)
377 3mkr_A Coatomer subunit epsilo 47.0 76 0.0026 32.7 10.0 85 5-100 64-156 (291)
378 3kci_A Probable E3 ubiquitin-p 47.0 3E+02 0.01 29.5 27.0 211 779-1010 107-348 (389)
379 2zuy_A YESX protein; beta-prop 46.7 3.7E+02 0.013 30.5 24.6 68 586-653 355-428 (620)
380 2k9m_A RNA polymerase sigma fa 45.8 28 0.00097 30.8 5.3 90 2-103 18-121 (130)
381 2lni_A Stress-induced-phosphop 44.7 1.4E+02 0.0049 25.2 10.7 89 8-102 19-112 (133)
382 4a9v_A PHOX; hydrolase, beta-p 43.3 56 0.0019 37.1 8.4 62 978-1040 476-550 (592)
383 4ga2_A E3 SUMO-protein ligase 43.3 87 0.003 28.1 8.7 94 21-121 13-111 (150)
384 3mkr_A Coatomer subunit epsilo 43.0 1.5E+02 0.0052 30.3 11.7 14 47-60 78-91 (291)
385 4fhn_B Nucleoporin NUP120; pro 40.6 12 0.0004 47.9 2.8 39 1022-1060 239-277 (1139)
386 1wp5_A Topoisomerase IV; broke 40.5 3.4E+02 0.012 28.3 26.2 240 853-1103 3-277 (323)
387 1suu_A DNA gyrase subunit A; t 39.9 3.4E+02 0.012 28.1 27.8 198 786-1007 6-231 (312)
388 3zwu_A Alkaline phosphatase PH 39.0 95 0.0032 35.7 9.7 63 554-616 478-548 (592)
389 1zi0_A DNA gyrase subunit A; b 38.7 3.5E+02 0.012 27.9 26.7 202 844-1052 42-278 (307)
390 1suu_A DNA gyrase subunit A; t 37.4 3.7E+02 0.013 27.8 28.5 238 854-1103 7-283 (312)
391 4gcn_A Protein STI-1; structur 37.4 1.2E+02 0.0041 26.1 8.4 100 16-117 19-124 (127)
392 3gyz_A Chaperone protein IPGC; 37.2 1.8E+02 0.0061 26.2 9.7 102 6-120 9-115 (151)
393 2d68_A FOP, FGFR1OP; alpha hel 37.2 29 0.00098 27.6 3.4 29 7-35 20-48 (82)
394 3qou_A Protein YBBN; thioredox 37.1 1.5E+02 0.005 30.3 10.4 104 11-121 123-231 (287)
395 2vgx_A Chaperone SYCD; alterna 35.8 1.9E+02 0.0066 25.6 9.8 80 15-100 31-115 (148)
396 2kck_A TPR repeat; tetratricop 35.7 62 0.0021 26.5 6.1 84 15-102 16-105 (112)
397 4fhn_B Nucleoporin NUP120; pro 35.0 79 0.0027 40.2 9.2 38 465-504 239-276 (1139)
398 3u4t_A TPR repeat-containing p 33.7 1.5E+02 0.0052 29.4 9.8 106 10-119 8-118 (272)
399 4a9v_A PHOX; hydrolase, beta-p 33.3 1.5E+02 0.005 33.8 9.7 65 553-617 477-549 (592)
400 3mez_B Mannose-specific lectin 32.8 2.3E+02 0.0078 24.0 9.2 59 981-1051 26-84 (113)
401 1zi0_A DNA gyrase subunit A; b 32.5 4.3E+02 0.015 27.2 27.9 238 854-1103 2-277 (307)
402 3upv_A Heat shock protein STI1 31.9 1.7E+02 0.0059 24.7 8.6 86 11-102 10-100 (126)
403 3sz7_A HSC70 cochaperone (SGT) 30.9 1.6E+02 0.0055 26.5 8.6 84 12-101 18-106 (164)
404 2xcb_A PCRH, regulatory protei 30.8 2.5E+02 0.0085 24.4 9.6 16 45-60 63-78 (142)
405 1elw_A TPR1-domain of HOP; HOP 30.7 2.1E+02 0.0073 23.1 10.4 89 8-102 7-100 (118)
406 3ma5_A Tetratricopeptide repea 30.5 88 0.003 25.5 6.0 54 43-102 16-69 (100)
407 2pl2_A Hypothetical conserved 30.3 2.5E+02 0.0086 26.8 10.4 108 9-120 9-129 (217)
408 1hxi_A PEX5, peroxisome target 28.8 1.2E+02 0.0043 25.8 6.9 72 42-120 25-96 (121)
409 3f7f_A Nucleoporin NUP120; nuc 28.0 2.4E+02 0.0084 33.0 10.6 37 600-638 223-259 (729)
410 3urz_A Uncharacterized protein 27.7 2.6E+02 0.0089 26.5 9.8 107 6-119 5-132 (208)
411 4gco_A Protein STI-1; structur 27.7 1.2E+02 0.0043 26.0 6.7 70 44-120 23-92 (126)
412 1oyi_A Double-stranded RNA-bin 27.2 36 0.0012 27.1 2.5 30 6-37 16-45 (82)
413 3iug_A RHO/CDC42/RAC GTPase-ac 26.9 40 0.0014 33.5 3.5 101 8-119 40-153 (229)
414 3vtx_A MAMA; tetratricopeptide 26.8 3.1E+02 0.011 24.9 10.1 48 13-60 12-65 (184)
415 3qwp_A SET and MYND domain-con 26.7 1.8E+02 0.0063 31.9 9.3 96 6-104 288-401 (429)
416 1elr_A TPR2A-domain of HOP; HO 26.6 2.7E+02 0.0093 23.0 9.8 93 10-102 9-107 (131)
417 4gyw_A UDP-N-acetylglucosamine 26.5 2.3E+02 0.0079 33.7 10.7 108 5-119 8-121 (723)
418 1hxi_A PEX5, peroxisome target 25.6 1.6E+02 0.0054 25.0 7.0 89 8-102 20-113 (121)
419 2pl2_A Hypothetical conserved 25.5 2.9E+02 0.01 26.3 9.8 108 6-121 39-163 (217)
420 2zux_A YESW protein; beta-prop 25.0 7.9E+02 0.027 27.8 27.1 291 355-672 177-531 (591)
421 3byi_A RHO GTPase activating p 24.9 1.7E+02 0.0058 28.4 7.7 84 8-104 38-139 (214)
422 1na0_A Designed protein CTPR3; 24.8 2.8E+02 0.0097 22.6 10.1 86 11-102 15-105 (125)
423 3q49_B STIP1 homology and U bo 24.6 2.6E+02 0.009 23.7 8.6 86 10-101 14-104 (137)
424 2q7f_A YRRB protein; TPR, prot 24.2 3.9E+02 0.013 25.4 10.8 106 7-119 58-169 (243)
425 4gyw_A UDP-N-acetylglucosamine 24.2 3.9E+02 0.013 31.7 12.0 107 8-121 45-157 (723)
426 3upv_A Heat shock protein STI1 24.1 1.6E+02 0.0056 24.8 6.9 72 43-121 13-84 (126)
427 1kdl_A YOPD protein; yersinia, 24.1 43 0.0015 19.4 1.7 14 5-18 4-17 (26)
428 2dba_A Smooth muscle cell asso 24.0 1.9E+02 0.0063 25.0 7.5 76 41-120 35-110 (148)
429 1vk8_A Hypothetical protein TM 23.8 12 0.00041 31.6 -0.8 37 23-60 36-72 (106)
430 2qfc_A PLCR protein; TPR, HTH, 23.8 3.4E+02 0.012 27.4 10.5 95 7-102 77-183 (293)
431 3gyz_A Chaperone protein IPGC; 23.8 1.4E+02 0.0049 26.9 6.5 83 14-102 45-132 (151)
432 2xcb_A PCRH, regulatory protei 22.9 1.6E+02 0.0054 25.8 6.7 72 42-120 26-97 (142)
433 3hym_B Cell division cycle pro 22.8 4E+02 0.014 26.9 11.0 89 8-102 92-187 (330)
434 2xev_A YBGF; tetratricopeptide 22.8 3.2E+02 0.011 22.7 8.7 90 9-102 6-104 (129)
435 4g26_A Pentatricopeptide repea 22.6 7.2E+02 0.025 27.7 13.5 40 21-60 121-166 (501)
436 2dba_A Smooth muscle cell asso 22.6 3.6E+02 0.012 23.0 11.5 104 8-118 31-142 (148)
437 1na3_A Designed protein CTPR2; 22.2 2.2E+02 0.0075 21.8 6.9 68 44-118 19-86 (91)
438 2ovj_A Mgcracgap, RAC GTPase-a 21.7 59 0.002 31.4 3.5 84 8-104 20-120 (201)
439 3sz7_A HSC70 cochaperone (SGT) 21.4 1.8E+02 0.0061 26.2 6.9 73 42-121 19-91 (164)
440 2q7f_A YRRB protein; TPR, prot 21.4 3.7E+02 0.013 25.6 9.9 107 7-120 92-204 (243)
441 4asv_A Small glutamine-rich te 20.7 56 0.0019 26.4 2.4 19 1-19 15-33 (92)
442 2fo7_A Synthetic consensus TPR 20.7 3.2E+02 0.011 22.6 8.3 89 8-102 38-131 (136)
443 2k9l_A RNA polymerase sigma fa 20.7 61 0.0021 25.4 2.7 35 2-36 27-62 (76)
444 3f7f_A Nucleoporin NUP120; nuc 20.4 1.2E+02 0.004 35.6 6.1 36 466-505 224-259 (729)
445 1a17_A Serine/threonine protei 20.2 3.3E+02 0.011 23.9 8.6 86 11-102 19-109 (166)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4e-68 Score=647.38 Aligned_cols=565 Identities=23% Similarity=0.368 Sum_probs=484.1
Q ss_pred EEe-ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC
Q 001163 351 MTL-NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD 429 (1134)
Q Consensus 351 ~~~-~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 429 (1134)
+.| +|.+.|++++|||||++ ||+|+.|++|+|||. +++.+.. +.+|.+.|++++|+||
T Consensus 10 ~~L~GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fspd 68 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFSPD 68 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEECTT
T ss_pred eEECCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEECCC
Confidence 445 49999999999999995 689999999999995 5555442 6789999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcC
Q 001163 430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP 509 (1134)
Q Consensus 430 ~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~ 509 (1134)
+++||+++.|++|+|||+. ++.+. .+.+|...|.+++|+|+++ +|++++.|+.+++|+.. ........+|...
T Consensus 69 g~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~~ 141 (577)
T 2ymu_A 69 GQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSSS 141 (577)
T ss_dssp SSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSSC
T ss_pred CCEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCCc
Confidence 9999999999999999964 45444 6889999999999999999 89999999999999954 5566677889999
Q ss_pred EEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCee
Q 001163 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV 589 (1134)
Q Consensus 510 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 589 (1134)
|.++.+.++ +..+++++.++.+++|+.. .........+...+..+.++|+++++++++.++ .|++||. +++.
T Consensus 142 v~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~v~~w~~-~~~~ 213 (577)
T 2ymu_A 142 VWGVAFSPD--GQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK----TVKLWNR-NGQL 213 (577)
T ss_dssp EEEEEECTT--SSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEETTS----EEEEECT-TSCE
T ss_pred eeeeeeecC--Cccceecccccceeccccc-eeeeeeccCCCcceeeeeecCCCCEEEEEcCCC----EEEEEeC-CCcE
Confidence 999988654 4789999999999999865 344455666778999999999999999998644 6999995 5778
Q ss_pred EEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEE
Q 001163 590 KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKIL 669 (1134)
Q Consensus 590 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw 669 (1134)
+..+.+|.. .+.+++|+|++.+|++++.|+.|++||. +++.+..+..+ ...|.+++|+|+++.+++++.|+.|++|
T Consensus 214 ~~~~~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~i~~w 289 (577)
T 2ymu_A 214 LQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKTVKLW 289 (577)
T ss_dssp EEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEecCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCEEEEE
Confidence 888888876 8999999999999999999999999996 56677777654 6789999999999999999999999999
Q ss_pred EccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccccc
Q 001163 670 ANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVE 749 (1134)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 749 (1134)
+.... ....+.
T Consensus 290 ~~~~~--~~~~~~------------------------------------------------------------------- 300 (577)
T 2ymu_A 290 NRNGQ--LLQTLT------------------------------------------------------------------- 300 (577)
T ss_dssp ETTSC--EEEEEC-------------------------------------------------------------------
T ss_pred eCCCc--EEEEEe-------------------------------------------------------------------
Confidence 96432 222221
Q ss_pred ccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCC
Q 001163 750 KSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPS 829 (1134)
Q Consensus 750 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~ 829 (1134)
+|...|.+++|+|+++.+++++.|+.+++|++...
T Consensus 301 ------------------------~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~--------------------- 335 (577)
T 2ymu_A 301 ------------------------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--------------------- 335 (577)
T ss_dssp ------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC---------------------
T ss_pred ------------------------cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC---------------------
Confidence 26678999999999999999999999999976521
Q ss_pred CcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 001163 830 GILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSS 908 (1134)
Q Consensus 830 ~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~ 908 (1134)
.+.. +.+ |...+.+++|+|+|++|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.
T Consensus 336 -~~~~--~~~--~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~ 408 (577)
T 2ymu_A 336 -HLQT--LTG--HSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKT 408 (577)
T ss_dssp -EEEE--ECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSE
T ss_pred -eeEE--EeC--CCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCE
Confidence 1111 222 889999999999999999998 899999996 6788889999999999999999 8999999999999
Q ss_pred EEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCC
Q 001163 909 IQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD 988 (1134)
Q Consensus 909 i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d 988 (1134)
|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||... + .+....+|. ..+.+++|+||
T Consensus 409 v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~-----~~~~~~~~~---~~v~~~~~spd 478 (577)
T 2ymu_A 409 VKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHS---SSVRGVAFSPD 478 (577)
T ss_dssp EEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C-----EEEEEECCS---SCEEEEEECTT
T ss_pred EEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C-----EEEEEcCCC---CCEEEEEEcCC
Confidence 999995 5788889999999999999999999999999999999999754 2 233334444 47999999999
Q ss_pred CCEEEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCC
Q 001163 989 QTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTN 1067 (1134)
Q Consensus 989 g~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1067 (1134)
+++|++ +.|+.|++||. +++++..+. +|...|++++|+|||++|++++.||+|++||. +++.+..+. +
T Consensus 479 ~~~las~~~d~~i~iw~~-~~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-------~ 547 (577)
T 2ymu_A 479 GQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-------G 547 (577)
T ss_dssp SCEEEEEETTSEEEEEET-TSCEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-------C
T ss_pred CCEEEEEeCCCEEEEEcC-CCCEEEEEe--CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-------C
Confidence 999999 57899999995 577777776 89999999999999999999999999999996 566665544 7
Q ss_pred CCCCceeEEEEecCCCCCEEEEEecCCcEEEEe
Q 001163 1068 PSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIE 1100 (1134)
Q Consensus 1068 h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~ 1100 (1134)
|.+.|+.+ +|+| |+++|++++.||+|++||
T Consensus 548 h~~~v~~~--~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 548 HSSSVWGV--AFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CSSCEEEE--EECT-TSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEE--EEcC-CCCEEEEEeCCCEEEEeC
Confidence 88999887 7889 789999999999999997
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.5e-66 Score=629.44 Aligned_cols=576 Identities=14% Similarity=0.126 Sum_probs=460.8
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
+.+.+.+++|||||++ +|+++ ++.|+|||+.+++.... +.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~~-l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCCE-EEeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcEEE
Confidence 4677889999999995 56776 57999999987765543 689999999999999999999
Q ss_pred EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC----CeEEEEECCCCceeEEecCCCcCE
Q 001163 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED----RVIKVWDAVTGTKQYIFEGHESPV 510 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d----~~i~iwd~~~~~~~~~~~~h~~~v 510 (1134)
+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+|+++ .|++++.+ +.|++|| +++.+..+.+|...|
T Consensus 76 sg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM 150 (611)
T ss_dssp EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred EEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence 99999999999997655332 235789999999999999999 67887765 3677776 677788899999999
Q ss_pred EEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeE
Q 001163 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590 (1134)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 590 (1134)
.+++|+|+.. ..|++++.|++|++||....+....+..|...|.+++|+|+|++|++++.|+ .|++||..+++.+
T Consensus 151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~----~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG----TIVLYNGVDGTKT 225 (611)
T ss_dssp EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS----CEEEEETTTCCEE
T ss_pred eEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCC----cEEEEECCCCcEe
Confidence 9999976542 3699999999999999887777778888999999999999999999998755 5999999999998
Q ss_pred EEec-------CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCC-CCCCcceEEEcCCCcEEEEEEC
Q 001163 591 RTYH-------GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG-GLQASPCIRFNKEGILLAVSTN 662 (1134)
Q Consensus 591 ~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~l~~~~~ 662 (1134)
..+. +|.. .|.+++|+|++++|++++.|++|++||+.+++.+..+..+. ....+..+.| ++..+++++.
T Consensus 226 ~~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~ 302 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISA 302 (611)
T ss_dssp EECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEET
T ss_pred eeeccccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeC
Confidence 8884 5655 89999999999999999999999999999999988886431 1223345555 6789999999
Q ss_pred CCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccc
Q 001163 663 DNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPK 742 (1134)
Q Consensus 663 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1134)
||.+++|+...+ .....+.
T Consensus 303 d~~i~~~~~~~~-~~~~~~~------------------------------------------------------------ 321 (611)
T 1nr0_A 303 NGFINFVNPELG-SIDQVRY------------------------------------------------------------ 321 (611)
T ss_dssp TCCEEEEETTTT-EEEEEEC------------------------------------------------------------
T ss_pred CCcEEEEeCCCC-CcceEEc------------------------------------------------------------
Confidence 999999998765 2222221
Q ss_pred cccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCC
Q 001163 743 IADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAP 822 (1134)
Q Consensus 743 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 822 (1134)
+|...|.+++|+|+|++|++++.|+.|++|++..
T Consensus 322 -------------------------------gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~--------------- 355 (611)
T 1nr0_A 322 -------------------------------GHNKAITALSSSADGKTLFSADAEGHINSWDIST--------------- 355 (611)
T ss_dssp -------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---------------
T ss_pred -------------------------------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC---------------
Confidence 3778899999999999999999999999997653
Q ss_pred cccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEE---ecCCCCCeEEEEEcCCCCcE
Q 001163 823 QLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTT---FMPPPPAATFLAFHPQDNNI 899 (1134)
Q Consensus 823 ~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~---~~~~~~~v~~l~~sp~~~~~ 899 (1134)
+........ +|...|.+++|++++.++..+.|+++++|+..++..... .........+++|+| ++++
T Consensus 356 -------~~~~~~~~~--~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~ 425 (611)
T 1nr0_A 356 -------GISNRVFPD--VHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDI 425 (611)
T ss_dssp -------CCEEECSSC--SCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSC
T ss_pred -------Cceeeeccc--CCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CCcE
Confidence 222222112 388999999999887554444499999999876543210 001234568899999 7877
Q ss_pred EEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCC
Q 001163 900 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALA 979 (1134)
Q Consensus 900 la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 979 (1134)
++++ .++.+++|+ .++ +..+. |...+.+++|+|||++||+++.|++|++||+.++... .... .+|. ..
T Consensus 426 ~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~---~~~~-~~h~---~~ 493 (611)
T 1nr0_A 426 AVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS---EVKT-IVHP---AE 493 (611)
T ss_dssp EEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEE---EEEE-EECS---SC
T ss_pred EEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCcee---eeec-cCCC---Cc
Confidence 7776 467899998 344 55554 8888999999999999999999999999999875421 1122 2333 46
Q ss_pred ceEEEEcCCCCEEEE-EeeceEEEEeCCC-cccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceee
Q 001163 980 DTRVQFHLDQTHLLA-VHETQIAIYEAPK-LECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCR 1057 (1134)
Q Consensus 980 v~~l~fs~dg~~l~~-~~d~~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~ 1057 (1134)
|.+++|||||++|++ +.|++|++||+.+ ++........+|...|.+++|||||++|++++.|++|++||+.++.....
T Consensus 494 v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~ 573 (611)
T 1nr0_A 494 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI 573 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCE
T ss_pred eEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccc
Confidence 999999999999999 5889999999987 66554422335999999999999999999999999999999988753210
Q ss_pred cCCCcccCCCC-CCCceeEEEEecCCCCCEEEEEecCCcEEEEeCC
Q 001163 1058 INPTAYLPTNP-SLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus 1058 ~~~~~~~~~~h-~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~ 1102 (1134)
....+| ...|.++ +|+| +++ |++++.||+|++|+++
T Consensus 574 -----~~~~~h~~~~v~~v--~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 574 -----IIKGAHAMSSVNSV--IWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp -----EETTSSTTSCEEEE--EEEE-TTE-EEEEETTSCEEEEECC
T ss_pred -----hhhccCcccCeeEE--EEcC-CCE-EEEecCCCCEEEEecc
Confidence 112367 7888877 7888 566 9999999999999984
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.6e-65 Score=624.49 Aligned_cols=561 Identities=23% Similarity=0.368 Sum_probs=481.6
Q ss_pred hcCCCCCCCccccccccceeeeEeCCCCCCcccccCCC------CCceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCC
Q 001163 307 KRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDD------LPKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMG 379 (1134)
Q Consensus 307 ~~~~~~~h~~~vw~~~~~i~~~~~s~~~~~l~~~~~d~------~~~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg 379 (1134)
++.||+||+++|. |++|||+|+.+++.+.|. ...++++++. |...|++++|||||+ +||+|+.|+
T Consensus 8 e~~~L~GH~~~V~-------~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~ 79 (577)
T 2ymu_A 8 ERNRLEAHSSSVR-------GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDK 79 (577)
T ss_dssp EEEEECCCSSCEE-------EEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred EeeEECCCCCcEE-------EEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCC
Confidence 5567889999776 999999999999987654 3566777776 999999999999999 568999999
Q ss_pred cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeee
Q 001163 380 DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEI 459 (1134)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l 459 (1134)
+|+|||+. ++.+.. +.+|...|.+++|+||+++|++++.|+.+++|+....... ..
T Consensus 80 ~i~vWd~~-~~~~~~-------------------~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~----~~ 135 (577)
T 2ymu_A 80 TVKLWNRN-GQLLQT-------------------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ----TL 135 (577)
T ss_dssp CEEEEETT-SCEEEE-------------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEE----EE
T ss_pred EEEEEECC-CCEEEE-------------------EECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceee----ec
Confidence 99999964 444432 6789999999999999999999999999999998765422 47
Q ss_pred ecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecC
Q 001163 460 EAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD 539 (1134)
Q Consensus 460 ~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~ 539 (1134)
.+|...|.++.|+|++. .+++++.++.+++|+. ..........|...|.++++.+ ++.++++++.|+.|++||..
T Consensus 136 ~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~w~~~ 210 (577)
T 2ymu_A 136 TGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNRN 210 (577)
T ss_dssp CCCSSCEEEEEECTTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECT--TSSCEEEEETTSEEEEECTT
T ss_pred cCCCCceeeeeeecCCc--cceecccccceecccc-ceeeeeeccCCCcceeeeeecC--CCCEEEEEcCCCEEEEEeCC
Confidence 78999999999999999 7899999999999994 5566777788999999998865 45899999999999999964
Q ss_pred CCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC
Q 001163 540 NLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE 619 (1134)
Q Consensus 540 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 619 (1134)
.+....+..+...|.+++|+|++++|++++.++ .|++||. +++.+..+.+|.. .+.+++|+|+++.+++++.|
T Consensus 211 -~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~----~i~~w~~-~~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d 283 (577)
T 2ymu_A 211 -GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK----TVKLWNR-NGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDD 283 (577)
T ss_dssp -SCEEEEEECCSSCEEEEEECTTSSCEEEEETTS----CEEEECT-TSCEEEEECCCSS-CEEEEEECTTSSEEEEEETT
T ss_pred -CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCC----EEEEEeC-CCCEEEEEecCCC-CEEEEEEcCCCCEEEEEeCC
Confidence 556667778888999999999999999998654 5999995 5677888888876 89999999999999999999
Q ss_pred CeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcc
Q 001163 620 FMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKA 699 (1134)
Q Consensus 620 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1134)
+.|++||. +++.+..+..| ...|.+++|+|+++++++++.||.|++|+.... .+..+.
T Consensus 284 ~~i~~w~~-~~~~~~~~~~h--~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~--~~~~~~----------------- 341 (577)
T 2ymu_A 284 KTVKLWNR-NGQLLQTLTGH--SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--HLQTLT----------------- 341 (577)
T ss_dssp SCEEEEET-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--EEEEEC-----------------
T ss_pred CEEEEEeC-CCcEEEEEecC--CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC--eeEEEe-----------------
Confidence 99999996 45667777644 678999999999999999999999999997543 111111
Q ss_pred cccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccE
Q 001163 700 PAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRV 779 (1134)
Q Consensus 700 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i 779 (1134)
+|...|
T Consensus 342 --------------------------------------------------------------------------~~~~~v 347 (577)
T 2ymu_A 342 --------------------------------------------------------------------------GHSSSV 347 (577)
T ss_dssp --------------------------------------------------------------------------CCSSCE
T ss_pred --------------------------------------------------------------------------CCCCCE
Confidence 266788
Q ss_pred EEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEE
Q 001163 780 SRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVM 859 (1134)
Q Consensus 780 ~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la 859 (1134)
.+++|+|+|+.+++++.|+.+++|+... +.+. .+.+ |...|.+++|+|||++|+
T Consensus 348 ~~~~~s~~g~~l~~~~~dg~v~~~~~~~-----------------------~~~~-~~~~--~~~~v~~~~~s~dg~~l~ 401 (577)
T 2ymu_A 348 WGVAFSPDGQTIASASDDKTVKLWNRNG-----------------------QLLQ-TLTG--HSSSVRGVAFSPDGQTIA 401 (577)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTC-----------------------CEEE-EEEC--CSSCEEEEEECTTSSCEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEcCCC-----------------------CEEE-EecC--CCCCeEEEEECCCCCEEE
Confidence 9999999999999999999999997432 1111 1222 889999999999999999
Q ss_pred Eee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeC
Q 001163 860 SAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNT 938 (1134)
Q Consensus 860 ~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d 938 (1134)
+++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+||
T Consensus 402 ~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd 478 (577)
T 2ymu_A 402 SASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPD 478 (577)
T ss_dssp EEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTT
T ss_pred EEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCC
Confidence 998 899999996 6788889999999999999999 8999999999999999996 57788899999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcccceeeccC
Q 001163 939 LNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPR 1017 (1134)
Q Consensus 939 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~ 1017 (1134)
+++|++++.|++|++||... + .+....+|. ..|++++|+|||++|++ +.|+.|++||. +++++..+.
T Consensus 479 ~~~las~~~d~~i~iw~~~~-~-----~~~~~~~h~---~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-- 546 (577)
T 2ymu_A 479 GQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-- 546 (577)
T ss_dssp SCEEEEEETTSEEEEEETTS-C-----EEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--
T ss_pred CCEEEEEeCCCEEEEEcCCC-C-----EEEEEeCCC---CCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc--
Confidence 99999999999999999653 2 344445555 57999999999999999 57899999996 578887776
Q ss_pred CCccCEEEEEEccCCCEEEEEecCCcEEEee
Q 001163 1018 EASGPITHATYSCDSQSIYVAFEEGSVGVLT 1048 (1134)
Q Consensus 1018 ~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd 1048 (1134)
+|.+.|++++|+|||++|+|++.|++|++||
T Consensus 547 ~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 547 GHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 8999999999999999999999999999997
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.2e-64 Score=614.47 Aligned_cols=564 Identities=15% Similarity=0.185 Sum_probs=455.1
Q ss_pred eeeEeCCCCCCcccccCCC------CCceeEEEe-ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeecee
Q 001163 326 LPVAYTPQSLGQSSYSTDD------LPKTVVMTL-NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFK 398 (1134)
Q Consensus 326 ~~~~~s~~~~~l~~~~~d~------~~~~~~~~~-~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~ 398 (1134)
.+++|+|+|+.+++...+. ........+ +|...|++++|||||+ +||+|+.||+|+|||+.+++.....
T Consensus 22 ~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~~--- 97 (611)
T 1nr0_A 22 VVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILKT--- 97 (611)
T ss_dssp CCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEEE---
T ss_pred eEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceeeE---
Confidence 3688999999988765322 123445555 4999999999999999 5699999999999999766533211
Q ss_pred eeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCC----CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecC
Q 001163 399 VWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP 474 (1134)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~d----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~ 474 (1134)
.+.+|.+.|.+++|+|||++||+++.+ +.|++||. ++... .+.+|...|++++|+|+
T Consensus 98 --------------~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~---~l~gh~~~v~~v~f~p~ 158 (611)
T 1nr0_A 98 --------------TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNG---NLTGQARAMNSVDFKPS 158 (611)
T ss_dssp --------------EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCB---CCCCCSSCEEEEEECSS
T ss_pred --------------eecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcc---eecCCCCCceEEEECCC
Confidence 256799999999999999999998875 47888874 44343 58899999999999999
Q ss_pred CCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec------
Q 001163 475 NKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD------ 548 (1134)
Q Consensus 475 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~------ 548 (1134)
+.. .|++|+.|++|++||..+++++..+.+|...|.+++|++ ++.+|++++.|++|++||+.+++....+.
T Consensus 159 ~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~ 235 (611)
T 1nr0_A 159 RPF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN 235 (611)
T ss_dssp SSC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSS
T ss_pred CCe-EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEeeeeccccccc
Confidence 874 599999999999999999999999999999999999965 55899999999999999998877766653
Q ss_pred -CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCC--CceEEEEEcCCCCEEEEEeCCCeEEEE
Q 001163 549 -APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK--RSVGVVQFDTTKNRFLAAGDEFMIKFW 625 (1134)
Q Consensus 549 -~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iw 625 (1134)
.|...|.+++|+|++++|++++.|+ .|++||+.+++.+.++..+.. .....+.| ++..+++++.||.+++|
T Consensus 236 ~~h~~~V~~v~~spdg~~l~s~s~D~----~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~ 309 (611)
T 1nr0_A 236 VAHSGSVFGLTWSPDGTKIASASADK----TIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFV 309 (611)
T ss_dssp CSSSSCEEEEEECTTSSEEEEEETTS----EEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEE
T ss_pred cccCCCEEEEEECCCCCEEEEEeCCC----eEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEE
Confidence 5778999999999999999998654 699999999999888865432 13444555 67899999999999999
Q ss_pred EcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccc
Q 001163 626 DMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTF 705 (1134)
Q Consensus 626 d~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1134)
|...++....+..| ...|.+++|+|+|++|++++.|++|++||+.++. ....+
T Consensus 310 ~~~~~~~~~~~~gh--~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~-~~~~~------------------------ 362 (611)
T 1nr0_A 310 NPELGSIDQVRYGH--NKAITALSSSADGKTLFSADAEGHINSWDISTGI-SNRVF------------------------ 362 (611)
T ss_dssp ETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEECS------------------------
T ss_pred eCCCCCcceEEcCC--CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-eeeec------------------------
Confidence 99998877777644 7789999999999999999999999999998762 11110
Q ss_pred cccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEe
Q 001163 706 GSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYT 785 (1134)
Q Consensus 706 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 785 (1134)
..+|...|.+++|+
T Consensus 363 ------------------------------------------------------------------~~~h~~~v~~~~~s 376 (611)
T 1nr0_A 363 ------------------------------------------------------------------PDVHATMITGIKTT 376 (611)
T ss_dssp ------------------------------------------------------------------SCSCSSCEEEEEEC
T ss_pred ------------------------------------------------------------------ccCCcceEEEEEEC
Confidence 01267889999999
Q ss_pred cCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCe
Q 001163 786 NSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGK 865 (1134)
Q Consensus 786 pdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~ 865 (1134)
+++ .+++++.|+.+++|++....... ....... .......++|+|+|+.++++.++.
T Consensus 377 ~~~-~l~s~s~d~~v~~w~~~~~~~~~-----------------~~~~~~~-----~~~~~~~~~~s~dg~~~~~~~~~~ 433 (611)
T 1nr0_A 377 SKG-DLFTVSWDDHLKVVPAGGSGVDS-----------------SKAVANK-----LSSQPLGLAVSADGDIAVAACYKH 433 (611)
T ss_dssp TTS-CEEEEETTTEEEEECSSSSSSCT-----------------TSCCEEE-----CSSCEEEEEECTTSSCEEEEESSE
T ss_pred CCC-cEEEEEcCCceEEeecCCccccc-----------------cceeeee-----cCCCCcEEEEeCCCcEEEEEeCce
Confidence 776 58899999999999876421100 0000000 234567899999999888888999
Q ss_pred EEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceE--EEeccCccCceEEEEEeeCCCEEE
Q 001163 866 ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV--KTKLKGHQKRITGLAFSNTLNVLV 943 (1134)
Q Consensus 866 i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~ 943 (1134)
+++|+ .++ +..+. |...+.+++|+| ++++||+|+.|++|++||+.+++. +.. .+|...|++++|+|||++|+
T Consensus 434 v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~la 507 (611)
T 1nr0_A 434 IAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLV 507 (611)
T ss_dssp EEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEE
T ss_pred EEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEE
Confidence 99998 344 55554 778899999999 899999999999999999987653 344 67999999999999999999
Q ss_pred EEeCCCcEEEEECCC-CccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcccceeeccCCC-c
Q 001163 944 SSGADSQLCVWSTDG-WEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPREA-S 1020 (1134)
Q Consensus 944 s~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h-~ 1020 (1134)
+++.|++|++|++.+ ++.... ....+|. ..|.+++|+|||++|++ +.|++|++||+.+++........+| .
T Consensus 508 s~s~d~~v~~w~~~~~~~~~~~---~~~~~H~---~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~ 581 (611)
T 1nr0_A 508 ATDQSRKVIPYSVANNFELAHT---NSWTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAM 581 (611)
T ss_dssp EEETTSCEEEEEGGGTTEESCC---CCCCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTT
T ss_pred EEcCCCCEEEEEcCCCCceeee---eeeeecc---cceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcc
Confidence 999999999999986 332110 0122244 57999999999999999 5899999999998764331223478 8
Q ss_pred cCEEEEEEccCCCEEEEEecCCcEEEeecC
Q 001163 1021 GPITHATYSCDSQSIYVAFEEGSVGVLTAS 1050 (1134)
Q Consensus 1021 ~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~ 1050 (1134)
..|.+++|+||++ |++++.|++|++|++.
T Consensus 582 ~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 582 SSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp SCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred cCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 9999999999999 9999999999999973
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.7e-63 Score=662.69 Aligned_cols=616 Identities=15% Similarity=0.175 Sum_probs=506.5
Q ss_pred eecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCE
Q 001163 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (1134)
Q Consensus 353 ~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 432 (1134)
.+|.+.|++++|||+|+ ++|+|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+|+|++
T Consensus 612 ~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~~~ 671 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDDSY 671 (1249)
T ss_dssp CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTSSE
T ss_pred ecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecCCCE
Confidence 35999999999999999 568999999999999999987654 6789999999999999999
Q ss_pred EEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEE
Q 001163 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 512 (1134)
Q Consensus 433 las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 512 (1134)
||+|+.|+.|+|||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|...|.+
T Consensus 672 l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~ 748 (1249)
T 3sfz_A 672 IATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH 748 (1249)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEE
T ss_pred EEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEE
Confidence 9999999999999999998665 6789999999999999765558999999999999999999999999999999999
Q ss_pred EeccccCCccEEEEecCCCcEEEEecCCCCceeeecC-------------CCCCeeEEEECcCCCEEEEEecCCCCCeEE
Q 001163 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-------------PGHSSTMMAYSADGARLFSCGTNKEGESYL 579 (1134)
Q Consensus 513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 579 (1134)
++|++ ++.++++++.||.|++||+........+.. ....+.+++|+|+|+.+++++. +.+
T Consensus 749 ~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~-----~~v 821 (1249)
T 3sfz_A 749 CRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK-----NKV 821 (1249)
T ss_dssp EEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET-----TEE
T ss_pred EEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC-----CcE
Confidence 99966 458999999999999999987665444322 1226788999999999999873 359
Q ss_pred EEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEE
Q 001163 580 VEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAV 659 (1134)
Q Consensus 580 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~ 659 (1134)
.+||..++.....+...+...+.+++|+|++.++++++.||.|++||+.++..+..+..| ...|.+++|+|++.++++
T Consensus 822 ~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h--~~~v~~v~~spdg~~l~s 899 (1249)
T 3sfz_A 822 LLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH--LSWVHGVMFSPDGSSFLT 899 (1249)
T ss_dssp EEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEE
T ss_pred EEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCC--ccceEEEEECCCCCEEEE
Confidence 999999999888887554558999999999999999999999999999999998888755 678999999999999999
Q ss_pred EECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccc
Q 001163 660 STNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDV 739 (1134)
Q Consensus 660 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1134)
++.||.|++|++.+..... ...... . . . .......
T Consensus 900 ~s~dg~v~vw~~~~~~~~~-~~~~~~-~-~------------------------------------~------~~~~~~~ 934 (1249)
T 3sfz_A 900 ASDDQTIRVWETKKVCKNS-AIVLKQ-E-I------------------------------------D------VVFQENE 934 (1249)
T ss_dssp EETTSCEEEEEHHHHHSCC-SSSEEE-E-E------------------------------------E------EEEETTE
T ss_pred EeCCCeEEEEEccccceee-eecccc-e-e------------------------------------e------EEEcCCC
Confidence 9999999999986531100 000000 0 0 0 0000112
Q ss_pred ccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccC
Q 001163 740 KPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTN 819 (1134)
Q Consensus 740 ~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 819 (1134)
..++.....+.+.+|...... ... .+...+.+++|+|+|+++++++.+|.+++|++..
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~----~~~------~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~------------ 992 (1249)
T 3sfz_A 935 TMVLAVDNIRGLQLIAGKTGQ----IDY------LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN------------ 992 (1249)
T ss_dssp EEEEEEESSSSEEEEEESSCC----EEE------ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT------------
T ss_pred cEEEEecCCcceEEEecCcce----EEE------cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC------------
Confidence 223333333444555433211 110 1456799999999999999999999999997653
Q ss_pred CCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCc
Q 001163 820 QAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 898 (1134)
Q Consensus 820 ~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 898 (1134)
+..... +. +|...|.+++|+|+|+++++++ ||.|++||+.+++... +..|...|.+++|+| ++
T Consensus 993 ----------~~~~~~-~~--~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~- 1056 (1249)
T 3sfz_A 993 ----------NRVFSS-GV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS- 1056 (1249)
T ss_dssp ----------TSCEEE-CC--CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-
T ss_pred ----------Cceeee-cc--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-
Confidence 222221 22 3899999999999999999998 8999999999988764 557899999999999 55
Q ss_pred EEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCC
Q 001163 899 IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASAL 978 (1134)
Q Consensus 899 ~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 978 (1134)
.+++++.||.|++||+.+++.+..+.+|.+.|++++|+|+++++++++.|++|++||+.+++ .+....+|. .
T Consensus 1057 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~-----~~~~l~~h~---~ 1128 (1249)
T 3sfz_A 1057 RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-----PLHELKGHN---G 1128 (1249)
T ss_dssp EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS-----CSBCCCCCS---S
T ss_pred cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc-----eeeeeccCC---C
Confidence 57889999999999999999999999999999999999999999999999999999998866 233444554 4
Q ss_pred CceEEEEcCCCCEEEEE-eeceEEEEeCCCcccceeec-------cCCCccCEEEEEEccCCCEEEEEecCCcEEEeecC
Q 001163 979 ADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFV-------PREASGPITHATYSCDSQSIYVAFEEGSVGVLTAS 1050 (1134)
Q Consensus 979 ~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~~~~~~-------~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~ 1050 (1134)
.|.+++|+|||++|+++ .||.|++||+.+++.+..+. ..+|.+.|++++|||||++|++++ |+|++||+.
T Consensus 1129 ~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~ 1206 (1249)
T 3sfz_A 1129 CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVA 1206 (1249)
T ss_dssp CEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSS
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECC
Confidence 79999999999999994 78999999999998877651 136889999999999999999885 899999999
Q ss_pred CCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163 1051 TLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus 1051 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
+++.+..+. +|...|..+ +|+| |+.+|++++.||.|++|++.+
T Consensus 1207 ~g~~~~~~~-------~~~~~i~~~--~~s~-dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1207 TGDSSQTFY-------TNGTNLKKI--HVSP-DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp SCBCCCCCC-------CSSCCCCCC--EECS-SSCCEEEECTTCCEEEECCCC
T ss_pred CCceeeeee-------ccCCcccEE--EECC-CCCEEEEecCCcEEEEEeecC
Confidence 998865544 466778777 7889 789999999999999999864
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7.2e-59 Score=570.92 Aligned_cols=557 Identities=11% Similarity=0.143 Sum_probs=469.7
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCc----cceeeeceeeeeccccCccccccccccCCCC-EEEEEEcC-
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSR----ERIAVKSFKVWELGACSMPLQASLSSDYTAS-VNRVMWSP- 428 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp- 428 (1134)
|...|++++|||+|+++ |+++ ++.|+|||+.++ +.... +.+|... |++++|+|
T Consensus 17 ~~~~v~~~~~spdg~~l-~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~sp~ 75 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNAI-AYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFSPI 75 (615)
T ss_dssp CTTCCCCCEEETTTTEE-EEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEECSS
T ss_pred ccCceeEEEECCCCCEE-EEec-CCeEEEEECCCCCCccccceE-------------------EecCCCceEEEEEECcC
Confidence 77899999999999954 6666 889999999987 54442 6789999 99999999
Q ss_pred -CCCEEEEEeCCCEEEEEEccCCc-----eeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC----CeEEEEECCCCc
Q 001163 429 -DGTLFGVAYSKHIVHLYTYHGGD-----ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED----RVIKVWDAVTGT 498 (1134)
Q Consensus 429 -d~~~las~s~dg~v~iwd~~~~~-----~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d----~~i~iwd~~~~~ 498 (1134)
++++||+|+.||.|+|||+.+++ .......+.+|...|.+++|+|+++ +|++++.+ +.|++|| +++
T Consensus 76 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~~ 151 (615)
T 1pgu_A 76 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SGN 151 (615)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TCC
T ss_pred CCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CCC
Confidence 99999999999999999997651 1223336788999999999999999 78888887 6888887 778
Q ss_pred eeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCC---CeeEEEECcC-CCEEEEEecCCC
Q 001163 499 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH---SSTMMAYSAD-GARLFSCGTNKE 574 (1134)
Q Consensus 499 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~~~~~~~ 574 (1134)
.+..+.+|...|.+++|+++.. .++++++.|+.|++||+...+....+..+.. .|.+++|+|+ ++++++++.++
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg- 229 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR- 229 (615)
T ss_dssp EEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC-
T ss_pred cceeeecCCccEEEEEECCCCC-cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCC-
Confidence 8999999999999999976542 3899999999999999998888888888888 8999999999 99999998654
Q ss_pred CCeEEEEEeCCCCeeEEEe-c---CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCC--CCCCcceE
Q 001163 575 GESYLVEWNESEGAVKRTY-H---GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG--GLQASPCI 648 (1134)
Q Consensus 575 ~~~~i~~wd~~~~~~~~~~-~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~v 648 (1134)
.|++||+.+++.+..+ . .|.. .+.+++|+ ++.+|++++.||.|++||+.+++.+..+..+. ....+.++
T Consensus 230 ---~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 230 ---KISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp ---CEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred ---eEEEEECCCCCEeEEecccccccCC-ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence 5999999999999998 5 5555 89999999 99999999999999999999999998887652 12456677
Q ss_pred EEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccC
Q 001163 649 RFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVG 728 (1134)
Q Consensus 649 ~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 728 (1134)
.|+ ++.++++++.||.|++|++.++ .....+.
T Consensus 305 ~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~---------------------------------------------- 336 (615)
T 1pgu_A 305 VAT-GNGRIISLSLDGTLNFYELGHD-EVLKTIS---------------------------------------------- 336 (615)
T ss_dssp EEE-ETTEEEEEETTSCEEEEETTEE-EEEEEEC----------------------------------------------
T ss_pred EeC-CCCeEEEEECCCCEEEEECCCC-cEEEEEe----------------------------------------------
Confidence 775 8899999999999999998764 3332222
Q ss_pred CCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCC
Q 001163 729 MSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRN 808 (1134)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~ 808 (1134)
+|...|.+++| |+ +++++.||.+++|++.
T Consensus 337 ---------------------------------------------~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~-- 365 (615)
T 1pgu_A 337 ---------------------------------------------GHNKGITALTV-NP---LISGSYDGRIMEWSSS-- 365 (615)
T ss_dssp ---------------------------------------------CCSSCEEEEET-TT---TEEEETTSCEEETTTT--
T ss_pred ---------------------------------------------CCCCCEEEEEe-cC---cEEECCCCeEEEEEch--
Confidence 26778999999 88 9999999999999653
Q ss_pred CCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCe
Q 001163 809 ERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAA 887 (1134)
Q Consensus 809 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v 887 (1134)
.+. . +|...|.+++| +++.++++++ |+.|++||+.+++... .+
T Consensus 366 -----------------------~~~---~--~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~-------~~ 409 (615)
T 1pgu_A 366 -----------------------SMH---Q--DHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS-------QP 409 (615)
T ss_dssp -----------------------EEE---C--CCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS-------CE
T ss_pred -----------------------hhc---C--cccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC-------Cc
Confidence 111 1 38999999999 6567777777 9999999987655432 68
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeC-CCcEEEEECCCCcccccee
Q 001163 888 TFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGA-DSQLCVWSTDGWEKQASKF 966 (1134)
Q Consensus 888 ~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~iwd~~~~~~~~~~~ 966 (1134)
.+++|+| ++.+++++ .++.+++|++.+++.+..+. |...+.+++|+ +++|++++. |+.|++||+.+++...
T Consensus 410 ~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~--- 481 (615)
T 1pgu_A 410 KVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF--- 481 (615)
T ss_dssp EEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE---
T ss_pred eEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc---
Confidence 8999999 88888877 88999999999999888887 88999999999 889999999 9999999998854211
Q ss_pred eeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCcccceeeccCC-CccCEEEEEEcc----------CCCE
Q 001163 967 LTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPRE-ASGPITHATYSC----------DSQS 1034 (1134)
Q Consensus 967 ~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~-h~~~v~~~~~s~----------dg~~ 1034 (1134)
....++. ..+.+++|+|||++|+++ .|+.|++||+.+++.+..+. + |...|++++|+| |+++
T Consensus 482 -~~~~~~~---~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~~~~~~~~~~ 555 (615)
T 1pgu_A 482 -DLKTPLR---AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW--AFRTSKINAISWKPAEKGANEEEIEEDL 555 (615)
T ss_dssp -ECSSCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS--CCCSSCEEEEEECCCC------CCSCCE
T ss_pred -cccCCcc---CceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEee--cCCCCceeEEEEcCccccccccccCCCE
Confidence 3334443 579999999999999995 78999999999999988776 5 899999999999 9999
Q ss_pred EEEEecCCcEEEeecCCC-cceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163 1035 IYVAFEEGSVGVLTASTL-RLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus 1035 l~s~s~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
|++++.||+|++||+.++ +.+..+. +|...|..+ +|+| ++. |++++.||+|++|++..
T Consensus 556 l~~~~~dg~i~iw~~~~~~~~~~~~~-------~h~~~v~~l--~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 556 VATGSLDTNIFIYSVKRPMKIIKALN-------AHKDGVNNL--LWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEEETTSCEEEEESSCTTCCEEETT-------SSTTCEEEE--EEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred EEEEcCCCcEEEEECCCCceechhhh-------cCccceEEE--EEcC-CCC-eEEecCCceEEEEeeec
Confidence 999999999999999998 5554443 688888888 7788 577 99999999999999864
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.2e-59 Score=623.05 Aligned_cols=578 Identities=15% Similarity=0.217 Sum_probs=472.9
Q ss_pred CCCCCccccccccceeeeEeCCCCCCcccccCCCC-------CceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEE
Q 001163 311 PFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDL-------PKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVM 382 (1134)
Q Consensus 311 ~~~h~~~vw~~~~~i~~~~~s~~~~~l~~~~~d~~-------~~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~ 382 (1134)
+.+|.+.|+ +++|+|+|..+++++.|+. ....+..+. |...|++++|||+|+ ++++|+.||.|+
T Consensus 611 ~~~h~~~v~-------~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~ 682 (1249)
T 3sfz_A 611 VRPHTDAVY-------HACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS-YIATCSADKKVK 682 (1249)
T ss_dssp ECCCSSCEE-------EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEE
T ss_pred EecccccEE-------EEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCC-EEEEEeCCCeEE
Confidence 348888766 8999999999999887763 445666666 999999999999999 568999999999
Q ss_pred EEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC--CCCEEEEEeCCCEEEEEEccCCceeeeeeeee
Q 001163 383 LWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE 460 (1134)
Q Consensus 383 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~ 460 (1134)
|||+.+++.+.. +.+|...|.+++|+| ++.++++|+.|+.|++||+.+++... .+.
T Consensus 683 vwd~~~~~~~~~-------------------~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~ 740 (1249)
T 3sfz_A 683 IWDSATGKLVHT-------------------YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN---TMF 740 (1249)
T ss_dssp EEETTTCCEEEE-------------------EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE---EEC
T ss_pred EEECCCCceEEE-------------------EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh---eec
Confidence 999999987653 568999999999999 56699999999999999999988665 678
Q ss_pred cCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecC-------------CCcCEEEEeccccCCccEEEEe
Q 001163 461 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG-------------HESPVYSICPHHKENIQFIFST 527 (1134)
Q Consensus 461 ~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-------------h~~~v~~~~~~~~~~~~~l~s~ 527 (1134)
+|.+.|++++|+|+++ ++++++.||+|++||+.+++....+.. +...+.+++|++ ++..++++
T Consensus 741 ~h~~~v~~~~~sp~~~--~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--dg~~l~~~ 816 (1249)
T 3sfz_A 741 GHTNSVNHCRFSPDDE--LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA--DGDKIIVA 816 (1249)
T ss_dssp CCSSCEEEEEECSSTT--EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT--TSSEEEEE
T ss_pred CCCCCEEEEEEecCCC--EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC--CCCEEEEE
Confidence 9999999999999999 899999999999999999988776542 223677777754 55788877
Q ss_pred cCCCcEEEEecCCCCceeeec-CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEE
Q 001163 528 ATDGKIKAWLYDNLGSRVDYD-APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQF 606 (1134)
Q Consensus 528 s~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~ 606 (1134)
+ ++.+.+||+.+......+. .+...+.+++|+|+++++++++.++ .|++||+.++..+..+.+|.. .|.+++|
T Consensus 817 ~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg----~v~vwd~~~~~~~~~~~~h~~-~v~~v~~ 890 (1249)
T 3sfz_A 817 A-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQY----CVELWNIDSRLKVADCRGHLS-WVHGVMF 890 (1249)
T ss_dssp E-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSS----CEEEEETTTTEEEEEECCCSS-CEEEEEE
T ss_pred c-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCC----eEEEEEcCCCceeeecCCCcc-ceEEEEE
Confidence 7 6899999999887776654 6677999999999999999997644 599999999999999999887 8999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCceeEEE-----------------------------ecC------CCCCCcceEEEc
Q 001163 607 DTTKNRFLAAGDEFMIKFWDMDNVNLLASI-----------------------------DAD------GGLQASPCIRFN 651 (1134)
Q Consensus 607 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----------------------------~~~------~~~~~v~~v~~s 651 (1134)
+|+++++++++.||.|++|++.+....... ... .....+.+++|+
T Consensus 891 spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 970 (1249)
T 3sfz_A 891 SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLS 970 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEc
Confidence 999999999999999999997542211000 000 012235555666
Q ss_pred CCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCC
Q 001163 652 KEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSN 731 (1134)
Q Consensus 652 p~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 731 (1134)
|+++++++|+.+|.|++|++.++ .....+
T Consensus 971 p~g~~l~~g~~~g~i~i~d~~~~-~~~~~~-------------------------------------------------- 999 (1249)
T 3sfz_A 971 PHLEYVAFGDEDGAIKIIELPNN-RVFSSG-------------------------------------------------- 999 (1249)
T ss_dssp TTSSEEEEEETTSCCEEEETTTT-SCEEEC--------------------------------------------------
T ss_pred CCCCEEEEEcCCCCEEEEEcCCC-ceeeec--------------------------------------------------
Confidence 66666666666666666655443 111111
Q ss_pred CCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCC
Q 001163 732 DSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERN 811 (1134)
Q Consensus 732 ~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~ 811 (1134)
.+|...|.+++|+|+|+++++++.||.+++|++..
T Consensus 1000 -----------------------------------------~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~---- 1034 (1249)
T 3sfz_A 1000 -----------------------------------------VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT---- 1034 (1249)
T ss_dssp -----------------------------------------CCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT----
T ss_pred -----------------------------------------ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC----
Confidence 13778899999999999999999999999997653
Q ss_pred cccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEE
Q 001163 812 STGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLA 891 (1134)
Q Consensus 812 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~ 891 (1134)
+.... .. +|...|.+++|++++.+++.+.|++|++||+.+++....+.+|.+.|++++
T Consensus 1035 ------------------~~~~~--~~--~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~ 1092 (1249)
T 3sfz_A 1035 ------------------GDYVF--LQ--AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCA 1092 (1249)
T ss_dssp ------------------TEEEC--CB--CCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEE
T ss_pred ------------------CceEE--Ee--cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEE
Confidence 22222 12 288999999999988766555599999999999999999999999999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccce-eeeec
Q 001163 892 FHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASK-FLTIP 970 (1134)
Q Consensus 892 ~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~ 970 (1134)
|+| +++++++++.||.|++||+.+++.+..+.+|.+.|++++|+|+|++|++++.||.|++||+.+++..... .....
T Consensus 1093 ~s~-d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~ 1171 (1249)
T 3sfz_A 1093 ISS-DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVE 1171 (1249)
T ss_dssp ECS-SSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC--
T ss_pred ECC-CCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccccc
Confidence 999 8999999999999999999999999999999999999999999999999999999999999987744321 01111
Q ss_pred CCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecC
Q 001163 971 NGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAS 1050 (1134)
Q Consensus 971 ~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~ 1050 (1134)
.........|.+++|+|||++|+++. |.|++||+.+++.+..+. .|...|++++|+|||++|++++.||.|++|++.
T Consensus 1172 ~~~~~~~~~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g~~~~~~~--~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1172 EGTATHGGWVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQTFY--TNGTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp -----CCSCCCEEEECTTSSCEEEES-SSEEEBCSSSCBCCCCCC--CSSCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred ccccccCceEEEEEECCCCCEEEECC-CeEEEEECCCCceeeeee--ccCCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence 11111225799999999999998874 999999999999988876 688999999999999999999999999999974
No 8
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.6e-57 Score=554.89 Aligned_cols=551 Identities=12% Similarity=0.160 Sum_probs=463.2
Q ss_pred eeeeEeCCCCCCcccccCCC------CCc----eeEEEee-cCCC-eeEEEEcC--CCCeEEEEEeCCCcEEEEecCCcc
Q 001163 325 ILPVAYTPQSLGQSSYSTDD------LPK----TVVMTLN-QGSA-VKSMDFHP--VQQILLVVGTNMGDVMLWEVGSRE 390 (1134)
Q Consensus 325 i~~~~~s~~~~~l~~~~~d~------~~~----~~~~~~~-h~~~-V~~v~fsp--~g~~lla~gs~dg~v~iwd~~~~~ 390 (1134)
|.+++|+|+|+.+++..... ... +....+. |... |++++|+| +|+ ++++|+.||.|+|||+.+++
T Consensus 21 v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~~~~~ 99 (615)
T 1pgu_A 21 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFDK 99 (615)
T ss_dssp CCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEEEG
T ss_pred eeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCC-EEEEecCCCEEEEEeCCCCc
Confidence 44899999999888765211 123 4566665 8899 99999999 998 56899999999999997662
Q ss_pred ceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCC----CEEEEEEccCCceeeeeeeeecCCCCE
Q 001163 391 RIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK----HIVHLYTYHGGDELRNHLEIEAHVGSV 466 (1134)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~d----g~v~iwd~~~~~~~~~~~~l~~h~~~V 466 (1134)
.......+ ....+.+|...|.+++|+|++++|++++.+ +.|++|| .++.+. .+.+|...|
T Consensus 100 ~~~~~~~~-----------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~~~~~~~v 163 (615)
T 1pgu_A 100 ESNSVEVN-----------VKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EVSGHSQRI 163 (615)
T ss_dssp GGTEEEEE-----------EEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---ECCSCSSCE
T ss_pred cccccccc-----------ccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce---eeecCCccE
Confidence 10000000 001256799999999999999999999988 7889998 444443 678999999
Q ss_pred EEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCc---CEEEEeccccCCccEEEEecCCCcEEEEecCCCCc
Q 001163 467 NDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES---PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS 543 (1134)
Q Consensus 467 ~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~ 543 (1134)
.+++|+|+++. .+++++.|+.|++||+.+++.+..+.+|.. .|.+++|+++ ++.+|++++.|+.|++||+.+.+.
T Consensus 164 ~~~~~~~~~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~ 241 (615)
T 1pgu_A 164 NACHLKQSRPM-RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD-SGEFVITVGSDRKISCFDGKSGEF 241 (615)
T ss_dssp EEEEECSSSSC-EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST-TCCEEEEEETTCCEEEEETTTCCE
T ss_pred EEEEECCCCCc-EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCE
Confidence 99999999975 699999999999999999999999999999 9999999654 158999999999999999998888
Q ss_pred eeee-c---CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCC---CCceEEEEEcCCCCEEEEE
Q 001163 544 RVDY-D---APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG---KRSVGVVQFDTTKNRFLAA 616 (1134)
Q Consensus 544 ~~~~-~---~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~ 616 (1134)
...+ . .+...|.+++|+ +++++++++.+ +.|++||+.+++.+..+..+. ...+..+.|. ++++++++
T Consensus 242 ~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 315 (615)
T 1pgu_A 242 LKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD----ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISL 315 (615)
T ss_dssp EEECCBTTBCCCSCEEEEEES-SSSEEEEEETT----SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEE
T ss_pred eEEecccccccCCceEEEEEc-CCCEEEEEcCC----CcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEE
Confidence 7777 5 788899999999 99999999864 469999999999999888763 2356777775 88999999
Q ss_pred eCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhh
Q 001163 617 GDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAI 696 (1134)
Q Consensus 617 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1134)
+.||.|++||+.+++.+..+..| ...|.+++| |+ +++++.||.|++|++. .+. .
T Consensus 316 ~~~g~i~~~d~~~~~~~~~~~~~--~~~v~~~~~-~~---l~~~~~dg~i~~w~~~----~~~--~-------------- 369 (615)
T 1pgu_A 316 SLDGTLNFYELGHDEVLKTISGH--NKGITALTV-NP---LISGSYDGRIMEWSSS----SMH--Q-------------- 369 (615)
T ss_dssp ETTSCEEEEETTEEEEEEEECCC--SSCEEEEET-TT---TEEEETTSCEEETTTT----EEE--C--------------
T ss_pred ECCCCEEEEECCCCcEEEEEeCC--CCCEEEEEe-cC---cEEECCCCeEEEEEch----hhc--C--------------
Confidence 99999999999999988888755 678999999 88 9999999999999875 110 0
Q ss_pred hcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCcccc
Q 001163 697 VKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTA 776 (1134)
Q Consensus 697 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 776 (1134)
.|.
T Consensus 370 -----------------------------------------------------------------------------~~~ 372 (615)
T 1pgu_A 370 -----------------------------------------------------------------------------DHS 372 (615)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 267
Q ss_pred ccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCC
Q 001163 777 MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS 856 (1134)
Q Consensus 777 ~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~ 856 (1134)
..|.+++| +++..+++++.|+.+++|++... . ....+.+++++|++.
T Consensus 373 ~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~----------------------~----------~~~~~~~~~~s~~~~ 419 (615)
T 1pgu_A 373 NLIVSLDN-SKAQEYSSISWDDTLKVNGITKH----------------------E----------FGSQPKVASANNDGF 419 (615)
T ss_dssp SCEEEEEC-CSTTCCEEEETTTEEEETTEEEE----------------------E----------CSSCEEEEEECSSSE
T ss_pred CceEEEEE-CCCcEEEEEeCCCCEEEEEcccC----------------------c----------ccCCceEEEEcCCCC
Confidence 78999999 67888999999999999976532 1 112578999999999
Q ss_pred eEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeC-CCcEEEEEcccceEE-EeccCccCceEEEE
Q 001163 857 YVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGME-DSSIQIYNVRVDEVK-TKLKGHQKRITGLA 934 (1134)
Q Consensus 857 ~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-dg~i~iwd~~~~~~~-~~l~~h~~~V~~l~ 934 (1134)
+++++.++.+++|+..+++.+..+. +...+.+++|+ +++|++++. |+.|++||+.+++.. ..+.+|...|++++
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~ 495 (615)
T 1pgu_A 420 TAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYIS 495 (615)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEE
T ss_pred EEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEE
Confidence 9998888999999999999998887 88899999998 579999999 999999999988766 78889999999999
Q ss_pred EeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCC-CCCCCCCceEEEEcC----------CCCEEEEE-eeceEEE
Q 001163 935 FSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNG-RTASALADTRVQFHL----------DQTHLLAV-HETQIAI 1002 (1134)
Q Consensus 935 ~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~fs~----------dg~~l~~~-~d~~i~i 1002 (1134)
|+|++++|++++.|+.|++||+.+++ .+....+ |. ..|.+++|+| ++++|+++ .|+.|++
T Consensus 496 ~s~~g~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~h~---~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~i 567 (615)
T 1pgu_A 496 ISPSETYIAAGDVMGKILLYDLQSRE-----VKTSRWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI 567 (615)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTE-----EEECCSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEE
T ss_pred ECCCCCEEEEcCCCCeEEEeeCCCCc-----ceeEeecCCC---CceeEEEEcCccccccccccCCCEEEEEcCCCcEEE
Confidence 99999999999999999999999865 3333333 44 5799999999 99999995 7899999
Q ss_pred EeCCCc-ccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCC
Q 001163 1003 YEAPKL-ECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAST 1051 (1134)
Q Consensus 1003 wd~~~~-~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~ 1051 (1134)
||+.++ +.+..+. +|...|++++|+|||+ |++++.||+|++|++.+
T Consensus 568 w~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 568 YSVKRPMKIIKALN--AHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EESSCTTCCEEETT--SSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EECCCCceechhhh--cCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 999988 6666665 8999999999999999 99999999999999875
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-56 Score=563.83 Aligned_cols=602 Identities=11% Similarity=0.079 Sum_probs=442.5
Q ss_pred EEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC
Q 001163 350 VMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD 429 (1134)
Q Consensus 350 ~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 429 (1134)
...++|...|++++|+|+|+ +||+|+.||+|+|||..+++... ...|...|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence 44567999999999999998 67999999999999988765443 234788999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCcee---------
Q 001163 430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ--------- 500 (1134)
Q Consensus 430 ~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~--------- 500 (1134)
|++|++++.|++|+|||+.+++.+. .+. |.+.|++++|+|+++ +|++|+.||+|++||+.++++.
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence 8899999999999999999988765 343 778999999999999 8999999999999999988764
Q ss_pred --EEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCC------------------CCCeeEEEEC
Q 001163 501 --YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP------------------GHSSTMMAYS 560 (1134)
Q Consensus 501 --~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------------------~~~v~~~~~s 560 (1134)
..+.+|.++|.+++|+|.. +..+++|+.|+.| +||++..+....+..+ ...|.+++|+
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~~-~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPRD-IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETTE-EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred cccccccCCCCeEEEEEccCC-CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 2346799999999998742 3689999999999 9999987766665544 3579999999
Q ss_pred cCCCEEEEEecCCCCCeEEEEEeCCCCeeEEE--ec---CC------------CCCceEEEEEc----CCC-CEEEEEeC
Q 001163 561 ADGARLFSCGTNKEGESYLVEWNESEGAVKRT--YH---GL------------GKRSVGVVQFD----TTK-NRFLAAGD 618 (1134)
Q Consensus 561 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~--~~---~~------------~~~~v~~~~~~----~~~-~~l~~~~~ 618 (1134)
|+|++|++++.|+ .|++||+++++++.. +. .| +...|.+++|+ |++ ..+++|+.
T Consensus 221 pdg~~lasgs~Dg----~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 221 PNSLHIITIHEDN----SLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp TTSSEEEEEETTC----CEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred CCCCEEEEEECCC----eEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 9999999998755 499999999987764 21 12 12368999995 443 45667765
Q ss_pred C-----CeEEEEEcC------------------CCceeEEEecCCCCCCcceEEEcC----------CCcEEEEEECCCc
Q 001163 619 E-----FMIKFWDMD------------------NVNLLASIDADGGLQASPCIRFNK----------EGILLAVSTNDNG 665 (1134)
Q Consensus 619 d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~sp----------~~~~l~~~~~dg~ 665 (1134)
+ ..+.+|++. +.+....+.. .+...|..+.+.+ +...+++++.||.
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~ 375 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL-PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE 375 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC-SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEec-CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence 5 378899852 2223333332 2234677777755 3447889999999
Q ss_pred EEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccc
Q 001163 666 IKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIAD 745 (1134)
Q Consensus 666 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (1134)
|++|++.++.........+... ....+ ....+ .
T Consensus 376 l~~~~~~~g~~~~~~~~~~~~l---------------------------------------~~~~~------~v~~~--~ 408 (902)
T 2oaj_A 376 IETMLYPSGIFTDKASLFPQNL---------------------------------------SWLRP------LATTS--M 408 (902)
T ss_dssp EEEEETTTCCEECCGGGSCGGG---------------------------------------TTBTT------BEEEE--E
T ss_pred EEEEECCCCCcccccccCCCcc---------------------------------------cccCC------CeeEE--E
Confidence 9999997663222111111000 00000 00000 0
Q ss_pred ccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCccc
Q 001163 746 EAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLW 825 (1134)
Q Consensus 746 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 825 (1134)
..+....+|+......... ..+..+|...+.+++|+|+|+.|++++.|++|++||+....... ...+
T Consensus 409 ~s~~~~~~w~~~~~~~~~~----~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~---------~~~~ 475 (902)
T 2oaj_A 409 AASVPNKLWLGALSAAQNK----DYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD---------NASF 475 (902)
T ss_dssp EEEEEHHHHHHHHHTTBCC----CCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT---------TBCE
T ss_pred EEEcCHHHHHHHHhcccCC----CCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC---------CceE
Confidence 1112234555332111000 11234577888899999999999999999999999987542100 0000
Q ss_pred CCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCC------------------------------
Q 001163 826 QPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTF------------------------------ 874 (1134)
Q Consensus 826 d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~------------------------------ 874 (1134)
... +...+ +.+|...|.+++|+|||++||+|+ ||+|+|||+.++
T Consensus 476 ~~~----l~~~~-~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (902)
T 2oaj_A 476 EVN----LSRTL-NKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVL 550 (902)
T ss_dssp EEE----HHHHT-TCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSE
T ss_pred Eee----chhhc-CCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccc
Confidence 000 00000 113889999999999999999999 999999999876
Q ss_pred ---------------eEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEE-----ecc-CccCceEEE
Q 001163 875 ---------------KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKT-----KLK-GHQKRITGL 933 (1134)
Q Consensus 875 ---------------~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~-----~l~-~h~~~V~~l 933 (1134)
+++..+.+|.+.|++++|+| +| +||+|+.|++|+|||+.++..+. .+. +|.+.|++|
T Consensus 551 ~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv 628 (902)
T 2oaj_A 551 VDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCI 628 (902)
T ss_dssp EECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEE
T ss_pred ccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEE
Confidence 34778889999999999999 88 99999999999999998877653 343 899999999
Q ss_pred EEe-----eCC---CEEEEEeCCCcEEEEEC---CCCccccceeeeecCCCCC--CCCCceEEE-Ec-------------
Q 001163 934 AFS-----NTL---NVLVSSGADSQLCVWST---DGWEKQASKFLTIPNGRTA--SALADTRVQ-FH------------- 986 (1134)
Q Consensus 934 ~~s-----~d~---~~l~s~s~Dg~i~iwd~---~~~~~~~~~~~~~~~~~~~--~~~~v~~l~-fs------------- 986 (1134)
+|+ ||| ++|++++.|++|++||+ .+|+.. ....++.. ..+.|..++ |+
T Consensus 629 ~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~-----~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~ 703 (902)
T 2oaj_A 629 EFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFD-----VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPK 703 (902)
T ss_dssp EEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEE-----EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHH
T ss_pred EEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEE-----EEecCceecCCCCceEEEEeEecCCCCcccCCHHH
Confidence 999 885 89999999999999999 555522 22222210 013455555 65
Q ss_pred ---------CCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEE---E------EccCCCEEEEEecCCcEEEee
Q 001163 987 ---------LDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHA---T------YSCDSQSIYVAFEEGSVGVLT 1048 (1134)
Q Consensus 987 ---------~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~---~------~s~dg~~l~s~s~Dg~i~vwd 1048 (1134)
+++..|+++ +..|+||++.++++..... .|.-.+.++ . |+++|..|++++.||+|++|+
T Consensus 704 ~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~~k~~~k~~--~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s 780 (902)
T 2oaj_A 704 MQNLSKGLCIPGIVLITG-FDDIRLITLGKSKSTHKGF--KYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFT 780 (902)
T ss_dssp HHGGGGTCCCCEEEEEEC-SSEEEEECTTCCCEEEEEC--SSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEE
T ss_pred HhccCCCCCCCeEEEEEe-ccceEEEeCccccceeeEc--ccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEE
Confidence 555555544 8899999999999887774 555666666 5 789999999999999999999
Q ss_pred cCCCcceeecCCC
Q 001163 1049 ASTLRLRCRINPT 1061 (1134)
Q Consensus 1049 ~~~~~~~~~~~~~ 1061 (1134)
+.+++.+..+...
T Consensus 781 ~p~l~~~~~~~~~ 793 (902)
T 2oaj_A 781 IPDFKEQMSEHIP 793 (902)
T ss_dssp TTTCCEEEEEECS
T ss_pred CcchHHHhhccCC
Confidence 9999998776643
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-55 Score=549.05 Aligned_cols=592 Identities=10% Similarity=0.089 Sum_probs=431.9
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 493 (1134)
..+|.+.|++++|+|++++||+|+.||+|+|||..+++... ...|...|.+++|+| |+ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 35899999999999999999999999999999998766433 234888999999999 77 799999999999999
Q ss_pred CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCce-----------eeecCCCCCeeEEEECcC
Q 001163 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR-----------VDYDAPGHSSTMMAYSAD 562 (1134)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-----------~~~~~~~~~v~~~~~s~~ 562 (1134)
+.+++++..+. |...|++++|++ ++++|++|+.||.|++||++..... .....|...|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCcEEEEEc-CCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 99999999886 778999999965 4589999999999999999876542 223456779999999996
Q ss_pred C-CEEEEEecCCCCCeEEEEEeCCCCeeEEEecCC-----------------CCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 001163 563 G-ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL-----------------GKRSVGVVQFDTTKNRFLAAGDEFMIKF 624 (1134)
Q Consensus 563 ~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i 624 (1134)
+ ..+++++. ++.| +||+++++.+..+..+ +...|.+++|+|++.+|++++.||.|++
T Consensus 163 ~~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DIGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 4 67777754 4468 9999999999888765 1237999999999999999999999999
Q ss_pred EEcCCCceeEEEec-----C-----------CCCCCcceEEEc----CCC-cEEEEEECCC-----cEEEEEccCCceeE
Q 001163 625 WDMDNVNLLASIDA-----D-----------GGLQASPCIRFN----KEG-ILLAVSTNDN-----GIKILANADGIRLL 678 (1134)
Q Consensus 625 wd~~~~~~~~~~~~-----~-----------~~~~~v~~v~~s----p~~-~~l~~~~~dg-----~i~iw~~~~~~~~~ 678 (1134)
||+.+++++..... + .+...|.+++|+ |++ .++++|+.|. .+.+|++.....
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~-- 315 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPR-- 315 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCC--
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCC--
Confidence 99999988764221 2 123468999995 443 5677777663 677877431100
Q ss_pred EEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecc
Q 001163 679 RTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTE 758 (1134)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~ 758 (1134)
..+++.+....+|+-.
T Consensus 316 ---------------------------------------------------------------~~~~s~~~~~~~~~~~- 331 (902)
T 2oaj_A 316 ---------------------------------------------------------------YSITSYEGMKNYYANP- 331 (902)
T ss_dssp ---------------------------------------------------------------GGGCCHHHHHHHHHSC-
T ss_pred ---------------------------------------------------------------ccccchhhhhhhhcCc-
Confidence 0011111111111100
Q ss_pred cCCccceeccccCCccccccEEEEEEec----------CCceeeeeccCCeEEeeecCCCCCCccc----cccc------
Q 001163 759 ITEPSQCRSLRLPDNLTAMRVSRLIYTN----------SGLAILALASNAVHKLWKWPRNERNSTG----KATT------ 818 (1134)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~i~~l~~sp----------dg~~l~~~~~dg~i~vw~~~~~~~~~~~----~~~~------ 818 (1134)
...+.+.. .+...|..+.+.+ +...+++++.||.+++|++......... ..+.
T Consensus 332 ----~~~~~~~~---~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v 404 (902)
T 2oaj_A 332 ----KQMKIFPL---PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLA 404 (902)
T ss_dssp ----SEEEEECC---SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBE
T ss_pred ----cceEEEec---CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCe
Confidence 00111110 1446677777765 3346888889999999998543110000 0000
Q ss_pred ------CCCCcccCCCC---CcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEE----EE--ec-
Q 001163 819 ------NQAPQLWQPPS---GILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM----TT--FM- 881 (1134)
Q Consensus 819 ------~~~~~~~d~~~---~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~----~~--~~- 881 (1134)
.....+|+... +.. ...+.+ |...+..++|+||+++|++++ |++|++||+.++... .. +.
T Consensus 405 ~~~~~s~~~~~~w~~~~~~~~~~-~~~l~G--~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~ 481 (902)
T 2oaj_A 405 TTSMAASVPNKLWLGALSAAQNK-DYLLKG--GVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSR 481 (902)
T ss_dssp EEEEEEEEEHHHHHHHHHTTBCC-CCSCCC--SBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHH
T ss_pred eEEEEEEcCHHHHHHHHhcccCC-CCcccC--CcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechh
Confidence 00112222110 111 112444 778888899999999999999 999999999877421 11 11
Q ss_pred ----CCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccc----------------------------------------
Q 001163 882 ----PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD---------------------------------------- 917 (1134)
Q Consensus 882 ----~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~---------------------------------------- 917 (1134)
+|...|.+++|+| ++++||+|+.||+|+||++.++
T Consensus 482 ~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (902)
T 2oaj_A 482 TLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTG 560 (902)
T ss_dssp HTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTT
T ss_pred hcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCC
Confidence 7888999999999 9999999999999999999876
Q ss_pred -----eEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecC-CCCCCCCCceEEEEc-----
Q 001163 918 -----EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPN-GRTASALADTRVQFH----- 986 (1134)
Q Consensus 918 -----~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~fs----- 986 (1134)
+++..+.+|.+.|++|+||||| +||+|+.|++|++||+.+........+.... +|. ..|++++|+
T Consensus 561 ~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~---~~V~sv~Fs~~~~~ 636 (902)
T 2oaj_A 561 VRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS---ACVTCIEFVIMEYG 636 (902)
T ss_dssp CSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC---CCEEEEEEEEEECT
T ss_pred CCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc---cceEEEEEEEEecC
Confidence 2467888999999999999999 9999999999999999875422110111222 454 579999999
Q ss_pred CCC---CEEEE-EeeceEEEEeC---CCcccceeeccC---CCccCEEEEE-Ec----------------------cCCC
Q 001163 987 LDQ---THLLA-VHETQIAIYEA---PKLECLKQFVPR---EASGPITHAT-YS----------------------CDSQ 1033 (1134)
Q Consensus 987 ~dg---~~l~~-~~d~~i~iwd~---~~~~~~~~~~~~---~h~~~v~~~~-~s----------------------~dg~ 1033 (1134)
||| ++|++ +.|++|++||+ .+|++...+... .|.+.|.+++ |+ ++|.
T Consensus 637 ~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 716 (902)
T 2oaj_A 637 DDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGI 716 (902)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEE
T ss_pred CCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeE
Confidence 886 78888 58899999999 788887777621 1346777777 65 4565
Q ss_pred EEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEE-EE------ecCCCCCEEEEEecCCcEEEEeCCCCCC
Q 001163 1034 SIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLV-IA------GNPTDPNQFALGLTDGGVYIIEPLEAEG 1106 (1134)
Q Consensus 1034 ~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~~------~~p~~~~~l~s~~~Dg~v~vW~~~~~~~ 1106 (1134)
+|+++ +..|+||++.+++...... +|...+.++. +. |++ ++..|++++.||+|++|++++.+.
T Consensus 717 ~l~~~--~~~ir~~~~~~~k~~~k~~-------~~~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~ 786 (902)
T 2oaj_A 717 VLITG--FDDIRLITLGKSKSTHKGF-------KYPLAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKE 786 (902)
T ss_dssp EEEEC--SSEEEEECTTCCCEEEEEC-------SSCEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEe--ccceEEEeCccccceeeEc-------ccceeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHH
Confidence 55554 7789999999998875542 2333344441 24 566 688999999999999999998886
Q ss_pred CccCC
Q 001163 1107 RWGTS 1111 (1134)
Q Consensus 1107 ~~~~~ 1111 (1134)
.-...
T Consensus 787 ~~~~~ 791 (902)
T 2oaj_A 787 QMSEH 791 (902)
T ss_dssp EEEEE
T ss_pred Hhhcc
Confidence 54444
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.5e-47 Score=482.17 Aligned_cols=476 Identities=16% Similarity=0.234 Sum_probs=384.1
Q ss_pred EEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163 350 VMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 428 (1134)
Q Consensus 350 ~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 428 (1134)
.+.+. |.+.|++++|||+|+ ++|+|+.||.|+|||+.+++.+.. +.+|.+.|.+++|+|
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s~ 65 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFIA 65 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEG
T ss_pred ceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEeC
Confidence 44555 999999999999999 568999999999999999876653 568999999999999
Q ss_pred CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC-ceeEEecCCC
Q 001163 429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHE 507 (1134)
Q Consensus 429 d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~ 507 (1134)
++++||+|+.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ +|++++.|+.|++||+.++ .....+.+|.
T Consensus 66 ~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 140 (814)
T 3mkq_A 66 RKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHE 140 (814)
T ss_dssp GGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCC
Confidence 99999999999999999999988665 6788999999999999999 7999999999999999987 6778889999
Q ss_pred cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC-CCeeEEEECc--CCCEEEEEecCCCCCeEEEEEeC
Q 001163 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG-HSSTMMAYSA--DGARLFSCGTNKEGESYLVEWNE 584 (1134)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd~ 584 (1134)
..|.+++|++. ++..+++++.||.|++||+........+..+. ..+..++|+| ++.++++++.+ +.|++||+
T Consensus 141 ~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~i~~~d~ 215 (814)
T 3mkq_A 141 HFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD----LTIKIWDY 215 (814)
T ss_dssp SCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT----SEEEEEET
T ss_pred CcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC----CEEEEEEC
Confidence 99999999762 44799999999999999998877777666554 7899999999 99999998764 46999999
Q ss_pred CCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCc--EEEEEEC
Q 001163 585 SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI--LLAVSTN 662 (1134)
Q Consensus 585 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~--~l~~~~~ 662 (1134)
.+++.+..+.+|.. .+.+++|+|+++++++++.||.|++||+.+++.+..+..+ ...+.+++|+|++. +++++ .
T Consensus 216 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~-~ 291 (814)
T 3mkq_A 216 QTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG--LERSWCIATHPTGRKNYIASG-F 291 (814)
T ss_dssp TTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS--SSSEEEEEECTTCGGGEEEEE-E
T ss_pred CCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC--CCcEEEEEEccCCCceEEEEE-e
Confidence 99999999998876 8999999999999999999999999999999999988765 56899999999986 45544 4
Q ss_pred CCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccc
Q 001163 663 DNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPK 742 (1134)
Q Consensus 663 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1134)
++.+.+|++....
T Consensus 292 ~~~~~~~~~~~~~------------------------------------------------------------------- 304 (814)
T 3mkq_A 292 DNGFTVLSLGNDE------------------------------------------------------------------- 304 (814)
T ss_dssp TTEEEEEECSCCS-------------------------------------------------------------------
T ss_pred CCCEEEEEcCCCC-------------------------------------------------------------------
Confidence 6678888764431
Q ss_pred cccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCe---EEeeecCCCCCCcccccccC
Q 001163 743 IADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAV---HKLWKWPRNERNSTGKATTN 819 (1134)
Q Consensus 743 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~---i~vw~~~~~~~~~~~~~~~~ 819 (1134)
..+.++|+|+.+++++.+.. +..-.+.
T Consensus 305 -------------------------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------------- 334 (814)
T 3mkq_A 305 -------------------------------------PTLSLDPVGKLVWSGGKNAAASDIFTAVIR------------- 334 (814)
T ss_dssp -------------------------------------CCEEECSSSEEEEECCTTSCTTCEEEEECC-------------
T ss_pred -------------------------------------ceeEECCCCCEEEECcccccceeeeeeecc-------------
Confidence 12345566666665544321 1000000
Q ss_pred CCCcccCCCCCcccccC---CCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCC
Q 001163 820 QAPQLWQPPSGILMTND---ISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQD 896 (1134)
Q Consensus 820 ~~~~~~d~~~~~~~~~~---~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~ 896 (1134)
..|++..+...... +. .+...+.+++|+|+|+++++++++.+.+|++....... .+.+.+++|+| +
T Consensus 335 ---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~sp-d 403 (814)
T 3mkq_A 335 ---GNEEVEQDEPLSLQTKELG--SVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----FGKCQDFVWGP-D 403 (814)
T ss_dssp ---SCCCCCSSSCBCCCCEEEC--CCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----EEECSEEEECT-T
T ss_pred ---cccccccCccceeeeecCC--CCccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----CCceEEEEEeC-C
Confidence 11222222222111 11 25677899999999999999999999999987654432 35688999999 8
Q ss_pred CcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCC---CEEEEEeCCCcEEEEECCCCccccceeeeecCCC
Q 001163 897 NNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTL---NVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGR 973 (1134)
Q Consensus 897 ~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~---~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 973 (1134)
++++|+++.+|.|++|+ .+.+|...+.+++|+|++ .+|++++.|+.|++||+.+++ .+.....+
T Consensus 404 g~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~-----~~~~~~~~ 470 (814)
T 3mkq_A 404 SNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGT-----LVRRIDVN 470 (814)
T ss_dssp SSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCC-----EEEEESSC
T ss_pred CCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCc-----EEEEEecC
Confidence 99999999999999995 456688889999999998 689999999999999999865 33333333
Q ss_pred CCCCCCceEEEEcCCCCEEEEE------eeceEEEEeCC
Q 001163 974 TASALADTRVQFHLDQTHLLAV------HETQIAIYEAP 1006 (1134)
Q Consensus 974 ~~~~~~v~~l~fs~dg~~l~~~------~d~~i~iwd~~ 1006 (1134)
. ..++|+|||++|+++ .+..+.+|...
T Consensus 471 ~------~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~ 503 (814)
T 3mkq_A 471 A------KDVIWSDNGELVMIVNTNSNGDEASGYTLLFN 503 (814)
T ss_dssp E------EEEEECTTSSEEEEEECCCSSCSCSEEEEEEC
T ss_pred C------CEEEEcCCCCEEEEEEcCcccCCceEEEEEec
Confidence 2 389999999999997 66666666443
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.5e-45 Score=463.77 Aligned_cols=466 Identities=16% Similarity=0.194 Sum_probs=384.1
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 492 (1134)
.+.+|.+.|++++|||++++||+|+.||.|+|||+.+++.+. .+.+|.+.|++++|+|+++ +|++++.|+.|++|
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence 367899999999999999999999999999999999988665 6789999999999999999 89999999999999
Q ss_pred ECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCC-CceeeecCCCCCeeEEEECc-CCCEEEEEe
Q 001163 493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVDYDAPGHSSTMMAYSA-DGARLFSCG 570 (1134)
Q Consensus 493 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~ 570 (1134)
|+.+++.+..+.+|...|.+++|+++ +.+|++++.||.|++||+... .....+..+...|.+++|+| +++.+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPT--KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSS--SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeCC--CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence 99999999999999999999999654 489999999999999999876 44556777888999999999 888999987
Q ss_pred cCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcC--CCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceE
Q 001163 571 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT--TKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCI 648 (1134)
Q Consensus 571 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 648 (1134)
.++ .|++||+.++.....+..+....+..++|+| ++.++++++.||.|++||+.+++.+..+..+ ...|.++
T Consensus 161 ~dg----~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~v~~~ 234 (814)
T 3mkq_A 161 LDR----TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH--MSNVSFA 234 (814)
T ss_dssp TTS----EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC--SSCEEEE
T ss_pred CCC----eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC--CCCEEEE
Confidence 644 6999999999888888877756899999999 9999999999999999999999999888765 6689999
Q ss_pred EEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccC
Q 001163 649 RFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVG 728 (1134)
Q Consensus 649 ~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 728 (1134)
+|+|++.++++++.||.|++|++.++ .....+..
T Consensus 235 ~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~--------------------------------------------- 268 (814)
T 3mkq_A 235 VFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLNV--------------------------------------------- 268 (814)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTC-SEEEEECC---------------------------------------------
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEeec---------------------------------------------
Confidence 99999999999999999999998876 23322211
Q ss_pred CCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCcee-eeeccCCeEEeeecCC
Q 001163 729 MSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAI-LALASNAVHKLWKWPR 807 (1134)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l-~~~~~dg~i~vw~~~~ 807 (1134)
+...+.+++|+|+|..+ ++++.++.+.+|++..
T Consensus 269 ----------------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 269 ----------------------------------------------GLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp ----------------------------------------------SSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred ----------------------------------------------CCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence 45678999999999854 6666677788886431
Q ss_pred CCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CC---eEE------EEEccCCeE-
Q 001163 808 NERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GG---KIS------LFNMMTFKT- 876 (1134)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg---~i~------lwd~~~~~~- 876 (1134)
....+.++|+|+.+++++ +. .+. .|++..+..
T Consensus 303 -------------------------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (814)
T 3mkq_A 303 -------------------------------------DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPL 345 (814)
T ss_dssp -------------------------------------CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCB
T ss_pred -------------------------------------CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccc
Confidence 123577889999998876 32 122 233333332
Q ss_pred ---EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEE
Q 001163 877 ---MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCV 953 (1134)
Q Consensus 877 ---~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~i 953 (1134)
...+..+...+.+++|+| +++++++++ |+.+.+|++...... +.+.+.+++|+|+++++++++.|+.|++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~~~-----~~~~i~~~~~spdg~~la~~~~~g~v~l 418 (814)
T 3mkq_A 346 SLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWRNK-----AFGKCQDFVWGPDSNSYALIDETGQIKY 418 (814)
T ss_dssp CCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTEEE-----EEEECSEEEECTTSSCEEEECTTCCEEE
T ss_pred eeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECcccccc-----CCCceEEEEEeCCCCeEEEEeCCCcEEE
Confidence 234455677899999999 899999998 899999998654432 3567889999999999999999999999
Q ss_pred EECCCCccccceeeeecCCCCCCCCCceEEEEcCCC---CEEEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEc
Q 001163 954 WSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQ---THLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYS 1029 (1134)
Q Consensus 954 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg---~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s 1029 (1134)
|+.-.+ +. ..+.+++|+||| ++|++ +.|+.|++||+.+++.+..+. .|.. .++||
T Consensus 419 ~~~~~~-------------~~---~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~--~~~~---~v~~s 477 (814)
T 3mkq_A 419 YKNFKE-------------VT---SWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRID--VNAK---DVIWS 477 (814)
T ss_dssp EETTEE-------------CT---TCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEES--SCEE---EEEEC
T ss_pred EECCCC-------------cc---ceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEe--cCCC---EEEEc
Confidence 963321 11 346778999998 45555 789999999999999888876 4443 99999
Q ss_pred cCCCEEEEE------ecCCcEEEee
Q 001163 1030 CDSQSIYVA------FEEGSVGVLT 1048 (1134)
Q Consensus 1030 ~dg~~l~s~------s~Dg~i~vwd 1048 (1134)
|||++|+++ +.++.+.+|.
T Consensus 478 ~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 478 DNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp TTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred CCCCEEEEEEcCcccCCceEEEEEe
Confidence 999999999 6666555543
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.8e-44 Score=413.38 Aligned_cols=284 Identities=20% Similarity=0.382 Sum_probs=260.8
Q ss_pred ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001163 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (1134)
Q Consensus 354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 433 (1134)
+|...|++++|+|+++ ++++|+.||+|+|||+.+++.... +.+|.+.|.+++|+|++++|
T Consensus 106 gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~~~~l 165 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSGKLL 165 (410)
T ss_dssp CCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred ccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCCCCEE
Confidence 3667788999999998 678999999999999999876653 67899999999999999999
Q ss_pred EEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEE
Q 001163 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513 (1134)
Q Consensus 434 as~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 513 (1134)
++|+.|++|+|||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|++|++||+.++.++.++.+|...|.++
T Consensus 166 ~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~ 240 (410)
T 1vyh_C 166 ASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240 (410)
T ss_dssp EEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEE
Confidence 999999999999999887665 6889999999999999999 89999999999999999999999999999999999
Q ss_pred eccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcC--------------------CCEEEEEecCC
Q 001163 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD--------------------GARLFSCGTNK 573 (1134)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~~~~~~ 573 (1134)
.+++ ++.+|++++.|++|++||+.+......+..|...|.+++|+|+ +.++++++.|+
T Consensus 241 ~~~~--~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~ 318 (410)
T 1vyh_C 241 RPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318 (410)
T ss_dssp EECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred EECC--CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence 8854 5589999999999999999998888888889999999999996 67899988644
Q ss_pred CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCC
Q 001163 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 653 (1134)
Q Consensus 574 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 653 (1134)
.|++||+.+++++..+.+|.. .|.+++|+|++.+|++++.||.|++||+.+++.+..+..| ...|.+++|+|+
T Consensus 319 ----~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~ 391 (410)
T 1vyh_C 319 ----TIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH--EHFVTSLDFHKT 391 (410)
T ss_dssp ----EEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC--SSCEEEEEECSS
T ss_pred ----eEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCC--CCcEEEEEEcCC
Confidence 699999999999999999887 8999999999999999999999999999999999998865 668999999999
Q ss_pred CcEEEEEECCCcEEEEEc
Q 001163 654 GILLAVSTNDNGIKILAN 671 (1134)
Q Consensus 654 ~~~l~~~~~dg~i~iw~~ 671 (1134)
+.+|++|+.||+|++|+.
T Consensus 392 ~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 392 APYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSCEEEEETTSEEEEEC-
T ss_pred CCEEEEEeCCCcEEEEeC
Confidence 999999999999999985
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=354.38 Aligned_cols=292 Identities=16% Similarity=0.194 Sum_probs=260.5
Q ss_pred eEEEe-ecCCCeeEEEEcCCCC---eEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEE
Q 001163 349 VVMTL-NQGSAVKSMDFHPVQQ---ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 424 (1134)
Q Consensus 349 ~~~~~-~h~~~V~~v~fsp~g~---~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 424 (1134)
+...+ +|.+.|++++|+|+++ .++++|+.|++|+|||+.+++..... .+.+|...|.++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~-----------------~l~gh~~~v~~~ 86 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQW-----------------SLEGHQLGVVSV 86 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEE-----------------EECCCSSCEEEE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeee-----------------eeccCCCCEEEE
Confidence 33444 4999999999998632 36799999999999999876532211 267999999999
Q ss_pred EEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEec
Q 001163 425 MWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE 504 (1134)
Q Consensus 425 ~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 504 (1134)
+|+|++.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++++.|+.|++||+.+++....+.
T Consensus 87 ~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~~~ 161 (321)
T 3ow8_A 87 DISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYSLD 161 (321)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEEEE
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEEec
Confidence 999999999999999999999999998665 5778999999999999999 89999999999999999999999999
Q ss_pred CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeC
Q 001163 505 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 584 (1134)
Q Consensus 505 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 584 (1134)
.|...|.+++|++ ++.+|++++.|+.|++||+.+.+....+..+...|.+++|+|++++|++++.|+ .|++||+
T Consensus 162 ~~~~~v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg----~i~iwd~ 235 (321)
T 3ow8_A 162 TRGKFILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG----YIKIYDV 235 (321)
T ss_dssp CSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTS----CEEEEET
T ss_pred CCCceEEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCC----eEEEEEC
Confidence 9999999999965 558999999999999999998888888888888999999999999999998654 5999999
Q ss_pred CCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC
Q 001163 585 SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 664 (1134)
Q Consensus 585 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg 664 (1134)
++++....+.+|.. .|.+++|+|++.+|++++.|+.|++||+.+++++..+..| ...|.+++|+|++.+|++++.||
T Consensus 236 ~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h--~~~v~~v~~s~~g~~l~s~~~d~ 312 (321)
T 3ow8_A 236 QHANLAGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH--QDQVWGVKYNGNGSKIVSVGDDQ 312 (321)
T ss_dssp TTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTC
T ss_pred CCcceeEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC--CCcEEEEEECCCCCEEEEEeCCC
Confidence 99999999999887 8999999999999999999999999999999999988755 67899999999999999999999
Q ss_pred cEEEEEc
Q 001163 665 GIKILAN 671 (1134)
Q Consensus 665 ~i~iw~~ 671 (1134)
.|++||.
T Consensus 313 ~i~vwd~ 319 (321)
T 3ow8_A 313 EIHIYDC 319 (321)
T ss_dssp CEEEEEC
T ss_pred eEEEEeC
Confidence 9999996
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.5e-38 Score=355.20 Aligned_cols=292 Identities=18% Similarity=0.303 Sum_probs=259.9
Q ss_pred eeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEE
Q 001163 348 TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (1134)
Q Consensus 348 ~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 426 (1134)
...+++. |...|++++|+|+|+ ++++|+.||+|+|||+.+++.+.. +..|...|.+++|
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 105 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAY 105 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEEEE
T ss_pred hhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEEEE
Confidence 3455555 999999999999999 568999999999999998876653 4679999999999
Q ss_pred cCCCCEEEEEeCCCEEEEEEccCCce-eeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecC
Q 001163 427 SPDGTLFGVAYSKHIVHLYTYHGGDE-LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 505 (1134)
Q Consensus 427 spd~~~las~s~dg~v~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 505 (1134)
+|++++|++|+.|+.|++||+.+++. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+.+
T Consensus 106 s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~ 182 (340)
T 1got_B 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTG 182 (340)
T ss_dssp CTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcC
Confidence 99999999999999999999987642 223346789999999999998875 89999999999999999999999999
Q ss_pred CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC
Q 001163 506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 585 (1134)
Q Consensus 506 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 585 (1134)
|...|.+++|++ ++.++++|+.|+.|++||+.+......+..|...|.+++|+|+++++++++.|+ .|++||++
T Consensus 183 h~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~----~v~iwd~~ 256 (340)
T 1got_B 183 HTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA----TCRLFDLR 256 (340)
T ss_dssp CSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTS----CEEEEETT
T ss_pred CCCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC----cEEEEECC
Confidence 999999999966 458999999999999999999888888888999999999999999999998755 59999999
Q ss_pred CCeeEEEecCCC-CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC
Q 001163 586 EGAVKRTYHGLG-KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 664 (1134)
Q Consensus 586 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg 664 (1134)
+++.+..+.... ...+.+++|+|++++|++|+.||.|++||..+++.+..+..| ...|.+++|+|+|.+|++|+.||
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h--~~~v~~~~~s~dg~~l~s~s~D~ 334 (340)
T 1got_B 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH--DNRVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEECTTSSCEEEEETTS
T ss_pred CCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecC--CCcEEEEEEcCCCCEEEEEcCCc
Confidence 998887775432 236899999999999999999999999999999999888865 67899999999999999999999
Q ss_pred cEEEEE
Q 001163 665 GIKILA 670 (1134)
Q Consensus 665 ~i~iw~ 670 (1134)
.|++||
T Consensus 335 ~i~iWd 340 (340)
T 1got_B 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred cEEecC
Confidence 999996
No 16
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3e-38 Score=356.17 Aligned_cols=294 Identities=15% Similarity=0.238 Sum_probs=261.4
Q ss_pred eEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163 349 VVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1134)
Q Consensus 349 ~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (1134)
..+.+. |...|++++|+|+++ +|++|+.||+|+|||..+++.... +..|...|.+++|+
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~s 115 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAYA 115 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEEC
T ss_pred EEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEEC
Confidence 345555 999999999999998 568999999999999988876543 45688899999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCce---eeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEec
Q 001163 428 PDGTLFGVAYSKHIVHLYTYHGGDE---LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE 504 (1134)
Q Consensus 428 pd~~~las~s~dg~v~iwd~~~~~~---~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 504 (1134)
|+|++||+|+.|+.+++|++..... ......+.+|...|.+++|+|++. .|++++.|++|++||+.+++++..+.
T Consensus 116 p~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~~ 193 (354)
T 2pbi_B 116 PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSFH 193 (354)
T ss_dssp TTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEc
Confidence 9999999999999999999875421 122335778999999999999998 79999999999999999999999999
Q ss_pred CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeC
Q 001163 505 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 584 (1134)
Q Consensus 505 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 584 (1134)
+|...|.++++++.+++.+|++|+.||.|++||+++......+..|...|.+++|+|+++++++++.|+ .|++||+
T Consensus 194 ~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~----~v~lwd~ 269 (354)
T 2pbi_B 194 GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDA----TCRLYDL 269 (354)
T ss_dssp CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS----CEEEEET
T ss_pred CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCC----eEEEEEC
Confidence 999999999998887788999999999999999999988888888999999999999999999998754 5999999
Q ss_pred CCCeeEEEecCCC-CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECC
Q 001163 585 SEGAVKRTYHGLG-KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 663 (1134)
Q Consensus 585 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d 663 (1134)
++++.+..+..+. ...+.+++|+|++.+|++++.|+.|++||+.+++.+..+..| ...|.+++|+|+|.+|++++.|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h--~~~v~~l~~spdg~~l~sgs~D 347 (354)
T 2pbi_B 270 RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH--ENRVSTLRVSPDGTAFCSGSWD 347 (354)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC--SSCEEEEEECTTSSCEEEEETT
T ss_pred CCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC--CCcEEEEEECCCCCEEEEEcCC
Confidence 9998877776543 236789999999999999999999999999999998888755 6789999999999999999999
Q ss_pred CcEEEEE
Q 001163 664 NGIKILA 670 (1134)
Q Consensus 664 g~i~iw~ 670 (1134)
|+|++|+
T Consensus 348 ~~v~vW~ 354 (354)
T 2pbi_B 348 HTLRVWA 354 (354)
T ss_dssp SEEEEEC
T ss_pred CCEEecC
Confidence 9999995
No 17
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.8e-38 Score=345.51 Aligned_cols=291 Identities=18% Similarity=0.335 Sum_probs=252.4
Q ss_pred eEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163 349 VVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1134)
Q Consensus 349 ~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (1134)
..+++. |.+.|++++|||+|+ ++++|+.||+|+|||+.+++.+.. +.+|..+|.+++|+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~~ 64 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKFI 64 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEE
T ss_pred eEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEEe
Confidence 345555 999999999999999 568999999999999999876653 56799999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC-ceeEEecCC
Q 001163 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGH 506 (1134)
Q Consensus 428 pd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h 506 (1134)
|++++|++|+.|++|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++|+.|++|++||+.++ .....+.+|
T Consensus 65 ~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h 139 (304)
T 2ynn_A 65 ARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGH 139 (304)
T ss_dssp GGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCC
T ss_pred CCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhccc
Confidence 999999999999999999999998665 6889999999999999999 8999999999999999887 455788999
Q ss_pred CcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec-CCCCCeeEEEECc--CCCEEEEEecCCCCCeEEEEEe
Q 001163 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-APGHSSTMMAYSA--DGARLFSCGTNKEGESYLVEWN 583 (1134)
Q Consensus 507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd 583 (1134)
...|.+++|+|. ++.+|++|+.|++|++||+........+. .+...+..+.|+| ++.+|++++.|+ .|++||
T Consensus 140 ~~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~----~i~iWd 214 (304)
T 2ynn_A 140 EHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL----TIKIWD 214 (304)
T ss_dssp CSCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTS----EEEEEE
T ss_pred CCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC----eEEEEe
Confidence 999999999763 34799999999999999998776665554 3446788899876 778999998644 699999
Q ss_pred CCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCc--EEEEEE
Q 001163 584 ESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI--LLAVST 661 (1134)
Q Consensus 584 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~--~l~~~~ 661 (1134)
+++++++..+.+|.. .+..++|+|++.+|++++.||.|++||..+++.+..+..+ ...+.+++|+|++. ++++|+
T Consensus 215 ~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~asg~ 291 (304)
T 2ynn_A 215 YQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG--LERSWCIATHPTGRKNYIASGF 291 (304)
T ss_dssp TTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS--SSSEEEEEECTTCGGGCEEEEE
T ss_pred CCCCccceeeCCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC--CccEEEEEECCCCCceEEEEec
Confidence 999999999999987 8999999999999999999999999999999999998755 56889999999875 577776
Q ss_pred CCCcEEEEEccC
Q 001163 662 NDNGIKILANAD 673 (1134)
Q Consensus 662 ~dg~i~iw~~~~ 673 (1134)
+| .+.+|++.+
T Consensus 292 ~~-g~~~~~~~~ 302 (304)
T 2ynn_A 292 DN-GFTVLSLGN 302 (304)
T ss_dssp TT-EEEEEECC-
T ss_pred CC-ceEEEEecc
Confidence 65 466777654
No 18
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.6e-38 Score=347.76 Aligned_cols=289 Identities=16% Similarity=0.254 Sum_probs=258.0
Q ss_pred cccCCCCEEEEEEcCC----CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeE
Q 001163 414 SSDYTASVNRVMWSPD----GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI 489 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd----~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i 489 (1134)
+.+|.+.|++++|+|+ +.+|++|+.|++|+|||+.+++.. ....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-LQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-eeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 5689999999999984 679999999999999999887532 3346889999999999999998 89999999999
Q ss_pred EEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEE
Q 001163 490 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC 569 (1134)
Q Consensus 490 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 569 (1134)
++||+.+++.+..+..|...+.+++|++ ++.+|++++.|+.|++|+++.......+..+...+.+++|+|++++|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 9999999999999999999999999865 55899999999999999999988888888888899999999999999999
Q ss_pred ecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEE
Q 001163 570 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR 649 (1134)
Q Consensus 570 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 649 (1134)
+.++ .|++||+.+++.+..+.+|.. .|.+++|+|++++|++++.||.|++||+++++.+..+..| ...|.+++
T Consensus 183 ~~dg----~i~iwd~~~~~~~~~~~~h~~-~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~ 255 (321)
T 3ow8_A 183 AIDG----IINIFDIATGKLLHTLEGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH--ASWVLNVA 255 (321)
T ss_dssp ETTS----CEEEEETTTTEEEEEECCCSS-CCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC--SSCEEEEE
T ss_pred cCCC----eEEEEECCCCcEEEEEcccCC-ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC--CCceEEEE
Confidence 8754 599999999999999998877 8999999999999999999999999999999998888755 67899999
Q ss_pred EcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCC
Q 001163 650 FNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM 729 (1134)
Q Consensus 650 ~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 729 (1134)
|+|++.+|++++.|++|++||+.++ ..+..+.+
T Consensus 256 ~sp~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~---------------------------------------------- 288 (321)
T 3ow8_A 256 FCPDDTHFVSSSSDKSVKVWDVGTR-TCVHTFFD---------------------------------------------- 288 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTT-EEEEEECC----------------------------------------------
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCC-EEEEEEcC----------------------------------------------
Confidence 9999999999999999999999876 34433322
Q ss_pred CCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecC
Q 001163 730 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWP 806 (1134)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~ 806 (1134)
|...|.+++|+|+|+.|++++.||.|++||.+
T Consensus 289 ---------------------------------------------h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 289 ---------------------------------------------HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ---------------------------------------------CSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred ---------------------------------------------CCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 66789999999999999999999999999854
No 19
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.1e-38 Score=363.89 Aligned_cols=286 Identities=19% Similarity=0.314 Sum_probs=260.1
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 493 (1134)
+.+|.++|++++|+|++++|++|+.||+|+|||+.+++... .+.+|.+.|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 57899999999999999999999999999999999988655 6889999999999999999 899999999999999
Q ss_pred CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCC
Q 001163 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (1134)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 573 (1134)
+.+++++..+.+|...|.+++|+++ +.+|++++.|++|++||+.++.....+..|...|.++.++|+++++++++.|+
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~--~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~ 256 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPN--GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 256 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCC--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCC
Confidence 9999999999999999999999764 48999999999999999999988888888999999999999999999998755
Q ss_pred CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCC--------------------CCEEEEEeCCCeEEEEEcCCCcee
Q 001163 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT--------------------KNRFLAAGDEFMIKFWDMDNVNLL 633 (1134)
Q Consensus 574 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~iwd~~~~~~~ 633 (1134)
.|++||+.+++....+.+|.. .+.+++|+|+ +.+|++|+.|+.|++||+.+++++
T Consensus 257 ----~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 257 ----TVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp ----CEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred ----eEEEEECCCCceeeEecCCCc-eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 499999999999999998886 8999999996 678999999999999999999999
Q ss_pred EEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccc
Q 001163 634 ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVG 713 (1134)
Q Consensus 634 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 713 (1134)
..+..| ...|.+++|+|++++|++++.||.|++||+.++ .....+.
T Consensus 332 ~~~~~h--~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~~------------------------------- 377 (410)
T 1vyh_C 332 MTLVGH--DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLN------------------------------- 377 (410)
T ss_dssp EEEECC--SSCEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEE-------------------------------
T ss_pred EEEECC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEc-------------------------------
Confidence 988865 668999999999999999999999999998765 2222221
Q ss_pred cCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeee
Q 001163 714 TSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILA 793 (1134)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~ 793 (1134)
+|...|.+++|+|++.+|++
T Consensus 378 ------------------------------------------------------------~h~~~v~~l~~~~~~~~l~s 397 (410)
T 1vyh_C 378 ------------------------------------------------------------AHEHFVTSLDFHKTAPYVVT 397 (410)
T ss_dssp ------------------------------------------------------------CCSSCEEEEEECSSSSCEEE
T ss_pred ------------------------------------------------------------CCCCcEEEEEEcCCCCEEEE
Confidence 26778999999999999999
Q ss_pred eccCCeEEeeec
Q 001163 794 LASNAVHKLWKW 805 (1134)
Q Consensus 794 ~~~dg~i~vw~~ 805 (1134)
++.||.|++|++
T Consensus 398 gs~D~~i~vW~~ 409 (410)
T 1vyh_C 398 GSVDQTVKVWEC 409 (410)
T ss_dssp EETTSEEEEEC-
T ss_pred EeCCCcEEEEeC
Confidence 999999999974
No 20
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.9e-38 Score=347.02 Aligned_cols=298 Identities=18% Similarity=0.245 Sum_probs=255.5
Q ss_pred EEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163 350 VMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 428 (1134)
Q Consensus 350 ~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 428 (1134)
..++. |.+.|++++|+|++..++++|+.|++|++||+..........+ ..+.+|...|.+++|+|
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~--------------~~~~~h~~~v~~~~~s~ 75 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV--------------RSFKGHSHIVQDCTLTA 75 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEE--------------EEEECCSSCEEEEEECT
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccc--------------eEEeCCcccEEEEEECC
Confidence 44554 9999999999998755889999999999999875433211111 13678999999999999
Q ss_pred CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCc
Q 001163 429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES 508 (1134)
Q Consensus 429 d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 508 (1134)
++++|++|+.|++|+|||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||+. ++++..+.+|..
T Consensus 76 dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~ 149 (319)
T 3frx_A 76 DGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGHND 149 (319)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCCSS
T ss_pred CCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEeccCC
Confidence 99999999999999999999998665 6889999999999999999 89999999999999975 678888999999
Q ss_pred CEEEEeccccC----CccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeC
Q 001163 509 PVYSICPHHKE----NIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 584 (1134)
Q Consensus 509 ~v~~~~~~~~~----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 584 (1134)
.|.++++.+.. ++..+++++.|+.|++||+........+..|...|.+++|+|++++|++++.|+ .|++||+
T Consensus 150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg----~i~iwd~ 225 (319)
T 3frx_A 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDG----EIMLWNL 225 (319)
T ss_dssp CEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTC----EEEEEET
T ss_pred cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCC----eEEEEEC
Confidence 99999987643 345899999999999999998887888888999999999999999999998644 6999999
Q ss_pred CCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC------CCCCCcceEEEcCCCcEEE
Q 001163 585 SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD------GGLQASPCIRFNKEGILLA 658 (1134)
Q Consensus 585 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~v~~sp~~~~l~ 658 (1134)
.+++.+..+..+. .+.+++|+|++.++++++.+ .+++|++..+..+..+..+ .+...+.+++|+|+|++|+
T Consensus 226 ~~~~~~~~~~~~~--~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 302 (319)
T 3frx_A 226 AAKKAMYTLSAQD--EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302 (319)
T ss_dssp TTTEEEEEEECCS--CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEE
T ss_pred CCCcEEEEecCCC--cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEE
Confidence 9999999887653 79999999999999888754 5999999988877776532 1234678999999999999
Q ss_pred EEECCCcEEEEEccCC
Q 001163 659 VSTNDNGIKILANADG 674 (1134)
Q Consensus 659 ~~~~dg~i~iw~~~~~ 674 (1134)
+|+.||.|++|++.++
T Consensus 303 sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 303 AGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEETTSCEEEEEEEEC
T ss_pred EeecCceEEEEEEeec
Confidence 9999999999998764
No 21
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2e-37 Score=347.82 Aligned_cols=286 Identities=16% Similarity=0.228 Sum_probs=256.5
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 493 (1134)
+.+|.+.|++++|+||+++|++|+.||+|+|||+.+++.+. .+..|...|.+++|+|+++ +|++|+.|+.|++||
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence 68999999999999999999999999999999999987655 6788999999999999999 899999999999999
Q ss_pred CCCC----ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEE
Q 001163 494 AVTG----TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC 569 (1134)
Q Consensus 494 ~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 569 (1134)
+.++ +....+.+|.+.|.++.|.++ ..+++++.|++|++||+.+......+..|...|.+++|+|++++++++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCC---CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 9876 356678899999999998653 358999999999999999988888888899999999999999999999
Q ss_pred ecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEE
Q 001163 570 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR 649 (1134)
Q Consensus 570 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 649 (1134)
+.|+ .|++||++++..+..+.+|.. .|.+++|+|++++|++++.||.|++||+++++.+..+..+.....|.+++
T Consensus 203 ~~d~----~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~ 277 (340)
T 1got_B 203 ACDA----SAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp ETTS----CEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred eCCC----cEEEEECCCCeeEEEEcCCcC-CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEE
Confidence 8755 599999999999999999887 89999999999999999999999999999999888876555556799999
Q ss_pred EcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCC
Q 001163 650 FNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM 729 (1134)
Q Consensus 650 ~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 729 (1134)
|+|+|++|++|+.||.|++||+.++ .....+.
T Consensus 278 ~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~~~----------------------------------------------- 309 (340)
T 1got_B 278 FSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLA----------------------------------------------- 309 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTC-CEEEEEE-----------------------------------------------
T ss_pred ECCCCCEEEEECCCCeEEEEEcccC-cEeeEee-----------------------------------------------
Confidence 9999999999999999999998766 2222222
Q ss_pred CCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeee
Q 001163 730 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK 804 (1134)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~ 804 (1134)
+|...|.+++|+|+|.+|++++.|+.|+||+
T Consensus 310 --------------------------------------------~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 310 --------------------------------------------GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp --------------------------------------------CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred --------------------------------------------cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 2778899999999999999999999999995
No 22
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.2e-38 Score=359.74 Aligned_cols=312 Identities=16% Similarity=0.202 Sum_probs=231.5
Q ss_pred ccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeecc------CCeEEeeecCCCCCCcccc
Q 001163 742 KIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS------NAVHKLWKWPRNERNSTGK 815 (1134)
Q Consensus 742 ~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~------dg~i~vw~~~~~~~~~~~~ 815 (1134)
.+.+..+.....|++.... ...|...|.+++|+|||++|++++. |+.+++|+.
T Consensus 19 ~~~~~g~~~~~~w~~p~~~-----------p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~---------- 77 (357)
T 4g56_B 19 YFQSNGSSKGSAWGRPVTA-----------PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKD---------- 77 (357)
T ss_dssp --------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESS----------
T ss_pred EEecCCCccccccCCCCCC-----------cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEEC----------
Confidence 3444555677888765211 1248899999999999999999998 455555543
Q ss_pred cccCCCCcccCCCCCcccccC-CCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEE----EecCCCCCeEEE
Q 001163 816 ATTNQAPQLWQPPSGILMTND-ISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMT----TFMPPPPAATFL 890 (1134)
Q Consensus 816 ~~~~~~~~~~d~~~~~~~~~~-~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~----~~~~~~~~v~~l 890 (1134)
.++...... ....+|...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|+++
T Consensus 78 ------------~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v 145 (357)
T 4g56_B 78 ------------PEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTL 145 (357)
T ss_dssp ------------CC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEE
T ss_pred ------------CCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEE
Confidence 333221111 111137889999999999988776669999999998876543 345789999999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCC-EEEEEeCCCcEEEEECCCCccccceeeee
Q 001163 891 AFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLN-VLVSSGADSQLCVWSTDGWEKQASKFLTI 969 (1134)
Q Consensus 891 ~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~ 969 (1134)
+|+| ++++|++|+.|+.|++||+.+++.+..+.+|.+.|++++|++++. ++++++.|++|++||+.+++.... +..
T Consensus 146 ~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~--~~~ 222 (357)
T 4g56_B 146 SVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR--IDF 222 (357)
T ss_dssp EECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB--CCC
T ss_pred EECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee--eee
Confidence 9999 899999999999999999999999999999999999999999885 789999999999999988663321 111
Q ss_pred cCCCCCCCCCceEEEEcCCC-CEEEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCC-CEEEEEecCCcEEE
Q 001163 970 PNGRTASALADTRVQFHLDQ-THLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDS-QSIYVAFEEGSVGV 1046 (1134)
Q Consensus 970 ~~~~~~~~~~v~~l~fs~dg-~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~Dg~i~v 1046 (1134)
..+. ..+.+++|+|++ .+|++ +.|+.|++||+.+++++..+. +|...|++++|+|++ ++|++++.|++|+|
T Consensus 223 -~~~~---~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~lasgs~D~~i~i 296 (357)
T 4g56_B 223 -CASD---TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA--VHSQNITGLAYSYHSSPFLASISEDCTVAV 296 (357)
T ss_dssp -TTCC---SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC--CCSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred -cccc---ccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe--ccceeEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 1111 468999999985 56776 478999999999999988886 789999999999998 57999999999999
Q ss_pred eecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCC
Q 001163 1047 LTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus 1047 wd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
||+.+++.+..+ +|.+.|+.+ +|+|.|+.+|++++.||+|++|+++...
T Consensus 297 wd~~~~~~~~~~--------~H~~~V~~v--afsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 297 LDADFSEVFRDL--------SHRDFVTGV--AWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp ECTTSCEEEEEC--------CCSSCEEEE--EECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EECCCCcEeEEC--------CCCCCEEEE--EEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 999999876443 488888877 8899889999999999999999997644
No 23
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.2e-38 Score=360.14 Aligned_cols=302 Identities=16% Similarity=0.270 Sum_probs=260.6
Q ss_pred ceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEE
Q 001163 347 KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425 (1134)
Q Consensus 347 ~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 425 (1134)
..+.+++. |.+.|++++|+|+|++ |++|+.||+|+|||+.+++.... +.+|...|.+++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~ 115 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECA 115 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCE
T ss_pred eEEeecccccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEE
Confidence 44556665 9999999999999995 68999999999999999876653 567999999999
Q ss_pred EcCCCCEEEEEeCCCEEEEEEccCCce----eeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE
Q 001163 426 WSPDGTLFGVAYSKHIVHLYTYHGGDE----LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY 501 (1134)
Q Consensus 426 ~spd~~~las~s~dg~v~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 501 (1134)
|+|+|++||+|+.|+.|++||+.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.+++.+.
T Consensus 116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEE
T ss_pred ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEE
Confidence 999999999999999999999975421 1122357899999999999998654 69999999999999999999988
Q ss_pred Ee-----cCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCC-CCceeeecCCCCCeeEEEECcCCCEEEEEecCCCC
Q 001163 502 IF-----EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN-LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG 575 (1134)
Q Consensus 502 ~~-----~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 575 (1134)
.+ .+|...|.++++++ .++.++++|+.|++|++||++. ......+..|...|.+++|+|++++|++++.|+
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~-~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~-- 271 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINS-LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDG-- 271 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECS-SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSS--
T ss_pred EeecccCCCCccCeEEEEeec-CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCC--
Confidence 77 67999999999865 3458999999999999999984 456667888889999999999999999998754
Q ss_pred CeEEEEEeCCCCeeEEEecCCCC------CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEec--CCCCCCcce
Q 001163 576 ESYLVEWNESEGAVKRTYHGLGK------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA--DGGLQASPC 647 (1134)
Q Consensus 576 ~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~ 647 (1134)
.|++||+++++.+..+..+.. ..+.+++|+|+++++++|+.||.|++||..+++.+..+.. .+|...|.+
T Consensus 272 --~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 272 --TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349 (380)
T ss_dssp --CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred --eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence 599999999999888866532 1378999999999999999999999999999998877732 345778999
Q ss_pred EEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 648 IRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 648 v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
++|+|+|.+|++|+.||+|++|++...
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 999999999999999999999998765
No 24
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.8e-38 Score=354.69 Aligned_cols=293 Identities=13% Similarity=0.167 Sum_probs=237.9
Q ss_pred ecCCCeeEEEEcCCCCeEEEEEeC------CCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163 354 NQGSAVKSMDFHPVQQILLVVGTN------MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1134)
Q Consensus 354 ~h~~~V~~v~fsp~g~~lla~gs~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (1134)
.|...|++|+|||||+ +||+|+. |+.|++|+..++....... ....+|...|.+++|+
T Consensus 40 ~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~---------------~~~~~~~~~V~~~~~s 103 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLC---------------TAGVQTEAGVTDVAWV 103 (357)
T ss_dssp CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGC---------------SEEEECSSCEEEEEEE
T ss_pred cccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEe---------------cccCCCCCCEEEEEEc
Confidence 4899999999999999 5688887 6788899887765432210 1135789999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCceeee-eeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCC
Q 001163 428 PDGTLFGVAYSKHIVHLYTYHGGDELRN-HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH 506 (1134)
Q Consensus 428 pd~~~las~s~dg~v~iwd~~~~~~~~~-~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h 506 (1134)
|++++| +++.||+|+|||+.+++.... .....+|...|++++|+|+++ +|++|+.|++|++||+.+++++..+.+|
T Consensus 104 ~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~h 180 (357)
T 4g56_B 104 SEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNAH 180 (357)
T ss_dssp TTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 998654 677899999999998875432 223568999999999999999 8999999999999999999999999999
Q ss_pred CcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec--CCCCCeeEEEECcCC-CEEEEEecCCCCCeEEEEEe
Q 001163 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD--APGHSSTMMAYSADG-ARLFSCGTNKEGESYLVEWN 583 (1134)
Q Consensus 507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd 583 (1134)
...|.+++|+++.+ .++++++.|+.|++||+++.+....+. .+...+.+++|+|++ .++++++.++ .|++||
T Consensus 181 ~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~----~i~~wd 255 (357)
T 4g56_B 181 SSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG----NVSLVN 255 (357)
T ss_dssp SSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS----CEEEEE
T ss_pred CCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc----ceeEEE
Confidence 99999999976553 578999999999999998877665544 345579999999985 5677776543 599999
Q ss_pred CCCCeeEEEecCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC-CCcEEEEEE
Q 001163 584 ESEGAVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EGILLAVST 661 (1134)
Q Consensus 584 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~ 661 (1134)
+++++.+..+.++.. .|.+++|+|++ ++|++++.||+|+|||+++++.+..+ +|...|++++|+| ++.+|++++
T Consensus 256 ~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 256 IKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp SSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEECSSSTTEEEEEE
T ss_pred CCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEEeCCCCCEEEEEc
Confidence 999999999999887 89999999987 57889999999999999999887665 4577899999998 899999999
Q ss_pred CCCcEEEEEccCC
Q 001163 662 NDNGIKILANADG 674 (1134)
Q Consensus 662 ~dg~i~iw~~~~~ 674 (1134)
.||+|++|++...
T Consensus 332 ~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 332 WDHKVLHHHLPSE 344 (357)
T ss_dssp TTSCEEEEECC--
T ss_pred CCCeEEEEECCCC
Confidence 9999999999765
No 25
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.3e-37 Score=346.66 Aligned_cols=302 Identities=17% Similarity=0.256 Sum_probs=248.3
Q ss_pred eeEEEee-cCC-CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEE
Q 001163 348 TVVMTLN-QGS-AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425 (1134)
Q Consensus 348 ~~~~~~~-h~~-~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 425 (1134)
.++.++. |.. .|++++|||+|+ +||+|+.|++|+|||+.++...... ....+|...|.+++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~~----------------~~~~~h~~~v~~~~ 68 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICKS----------------VLSEGHQRTVRKVA 68 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEEE----------------EECSSCSSCEEEEE
T ss_pred EEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceeee----------------eeccccCCcEEEEE
Confidence 3455665 776 999999999999 5689999999999999877543211 12468999999999
Q ss_pred EcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC---ceeEE
Q 001163 426 WSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG---TKQYI 502 (1134)
Q Consensus 426 ~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~---~~~~~ 502 (1134)
|+|+|++||+|+.|++|+|||+.++.. .....+.+|...|.+++|+|+++ +|++|+.|++|++||+.++ +++..
T Consensus 69 ~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~ 145 (345)
T 3fm0_A 69 WSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSV 145 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEE
Confidence 999999999999999999999987652 23346889999999999999999 8999999999999999876 34667
Q ss_pred ecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCc--eeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEE
Q 001163 503 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS--RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 580 (1134)
Q Consensus 503 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 580 (1134)
+.+|...|.+++|+++ +.+|++++.|+.|++||...... ...+..|...|.+++|+|+|++|++++.|+ .|+
T Consensus 146 ~~~h~~~v~~~~~~p~--~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~----~v~ 219 (345)
T 3fm0_A 146 LNSHTQDVKHVVWHPS--QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR----TVR 219 (345)
T ss_dssp ECCCCSCEEEEEECSS--SSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS----CEE
T ss_pred ecCcCCCeEEEEECCC--CCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC----eEE
Confidence 8899999999999765 47999999999999999886643 356777888999999999999999998755 599
Q ss_pred EEeCCC---------------CeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc----eeEEE---ec
Q 001163 581 EWNESE---------------GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN----LLASI---DA 638 (1134)
Q Consensus 581 ~wd~~~---------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~---~~ 638 (1134)
+||... .+++..+.+.+...|.+++|+|++..|++++.|+.|++|+...+. +...+ ..
T Consensus 220 iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 299 (345)
T 3fm0_A 220 IWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLH 299 (345)
T ss_dssp EEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEET
T ss_pred EeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeec
Confidence 999632 234556666555589999999999999999999999999987643 11111 12
Q ss_pred CCCCCCcceEEEcCCC-cEEEEEECCCcEEEEEccCCc
Q 001163 639 DGGLQASPCIRFNKEG-ILLAVSTNDNGIKILANADGI 675 (1134)
Q Consensus 639 ~~~~~~v~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~~ 675 (1134)
.+|...|++++|+|++ .+|++++.||+|++|++.+..
T Consensus 300 ~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 300 QAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp TSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred ccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 3567789999999987 599999999999999998773
No 26
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=348.45 Aligned_cols=297 Identities=13% Similarity=0.122 Sum_probs=238.0
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCc-cccccccccCCCCEEEEEEcCCCCEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSM-PLQASLSSDYTASVNRVMWSPDGTLF 433 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~l~~spd~~~l 433 (1134)
|...|.+++|||||+ +|++++ |+++++||.... +|+...... .........|...|.+++|+||+ .|
T Consensus 29 ~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l 96 (344)
T 4gqb_B 29 MERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLW---------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GI 96 (344)
T ss_dssp CCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEE---------EESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EE
T ss_pred ccCCEEEEEECCCCC-EEEEEe-CCceEEeeceee---------eeccccccCCcceeeeeeccCCCEEEEEEeCCC-eE
Confidence 566799999999999 556666 778888874211 111100000 00011123467889999999985 68
Q ss_pred EEEeCCCEEEEEEccCCceeeee-eeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEE
Q 001163 434 GVAYSKHIVHLYTYHGGDELRNH-LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 512 (1134)
Q Consensus 434 as~s~dg~v~iwd~~~~~~~~~~-~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 512 (1134)
++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+|+ +|++|+.|++|++||+.+++++..+.+|...|.+
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~ 174 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTC 174 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEE
Confidence 89999999999999998765432 24668999999999999999 8999999999999999999999999999999999
Q ss_pred EeccccCCccEEEEecCCCcEEEEecCCCCceeeecC--CCCCeeEEEECcCC-CEEEEEecCCCCCeEEEEEeCCCCee
Q 001163 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA--PGHSSTMMAYSADG-ARLFSCGTNKEGESYLVEWNESEGAV 589 (1134)
Q Consensus 513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~ 589 (1134)
++|+++.. .++++++.|++|++||+++.+....+.. +...+.+++|+|++ +++++++.| +.|++||++++++
T Consensus 175 ~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d----g~v~~wd~~~~~~ 249 (344)
T 4gqb_B 175 VAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN----GTVSLVDTKSTSC 249 (344)
T ss_dssp EEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT----SEEEEEESCC--C
T ss_pred EEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC----CcEEEEECCCCcE
Confidence 99976543 5889999999999999998887766543 44578999999954 577777654 4699999999999
Q ss_pred EEEecCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCc-EEEEEECCCcEE
Q 001163 590 KRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI-LLAVSTNDNGIK 667 (1134)
Q Consensus 590 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~~~~~dg~i~ 667 (1134)
+..+.+|.. .|.+++|+|++ ++|++++.|++|++||+.+++.+. +. +|...|++++|+|++. +|++++.||+|+
T Consensus 250 ~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--~H~~~V~~v~~sp~~~~llas~s~D~~v~ 325 (344)
T 4gqb_B 250 VLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--AHRDFVRDATWSPLNHSLLTTVGWDHQVV 325 (344)
T ss_dssp CEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--CCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--CCCCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence 999999987 89999999998 578999999999999999987654 33 5577999999999885 677999999999
Q ss_pred EEEccCC
Q 001163 668 ILANADG 674 (1134)
Q Consensus 668 iw~~~~~ 674 (1134)
+|++.+.
T Consensus 326 ~w~v~~~ 332 (344)
T 4gqb_B 326 HHVVPTE 332 (344)
T ss_dssp EEECCC-
T ss_pred EEECCCC
Confidence 9998765
No 27
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.6e-38 Score=352.28 Aligned_cols=295 Identities=15% Similarity=0.159 Sum_probs=230.9
Q ss_pred ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCc-ccccCCCCCCCCCCeeEEEEcC
Q 001163 775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGI-LMTNDISDTNPEDAVPCFALSK 853 (1134)
Q Consensus 775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~h~~~v~~v~~s~ 853 (1134)
+...|.+++|+|||++|++++ |+++++|+... .+|+..... ..........+...|.+++|+|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL---------------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE---------------EEESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeecee---------------eeeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 567899999999999888766 77788886331 111111100 0000000011567899999999
Q ss_pred CCCeEEEee-CCeEEEEEccCCeEEEE----ecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccC
Q 001163 854 NDSYVMSAS-GGKISLFNMMTFKTMTT----FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQK 928 (1134)
Q Consensus 854 dg~~la~~s-dg~i~lwd~~~~~~~~~----~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~ 928 (1134)
|+. |++++ ||+|+|||+.+++.+.. +.+|...|++++|+| ++++|++|+.|++|++||+.+++++..+.+|.+
T Consensus 93 d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 93 ERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp TTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 975 55565 99999999998876544 448999999999999 899999999999999999999999999999999
Q ss_pred ceEEEEEeeCCC-EEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCC-CCEEEE-EeeceEEEEeC
Q 001163 929 RITGLAFSNTLN-VLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD-QTHLLA-VHETQIAIYEA 1005 (1134)
Q Consensus 929 ~V~~l~~s~d~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d-g~~l~~-~~d~~i~iwd~ 1005 (1134)
.|++++|++++. +|++++.|++|++||+.+++.... +.. ..+. ..+.+++|+|+ +++|++ +.|++|++||+
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~-~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ--IGC-SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE--CC-----C---CCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeee--eec-ceee---ccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence 999999999984 789999999999999998763221 111 1111 35889999995 567777 47899999999
Q ss_pred CCcccceeeccCCCccCEEEEEEccCC-CEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCC
Q 001163 1006 PKLECLKQFVPREASGPITHATYSCDS-QSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDP 1084 (1134)
Q Consensus 1006 ~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~ 1084 (1134)
.+++++..+. +|...|++++|+||| ++|++|+.|++|+|||+.+++.+. + .+|.+.|+++ +|+|++.
T Consensus 245 ~~~~~~~~~~--~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~-------~~H~~~V~~v--~~sp~~~ 312 (344)
T 4gqb_B 245 KSTSCVLSSA--VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S-------QAHRDFVRDA--TWSPLNH 312 (344)
T ss_dssp CC--CCEEEE--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E-------CCCSSCEEEE--EECSSST
T ss_pred CCCcEEEEEc--CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E-------cCCCCCEEEE--EEeCCCC
Confidence 9999998887 899999999999998 579999999999999999987643 2 2688999887 8899666
Q ss_pred CEEEEEecCCcEEEEeCCCCC
Q 001163 1085 NQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus 1085 ~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
.+|+++|.||+|++|+++...
T Consensus 313 ~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 313 SLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TEEEEEETTSCEEEEECCC--
T ss_pred eEEEEEcCCCeEEEEECCCCC
Confidence 788899999999999998643
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-37 Score=357.05 Aligned_cols=307 Identities=15% Similarity=0.225 Sum_probs=250.3
Q ss_pred eeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEec----CCccceeeeceeeeeccccCcccc-ccccccCCCCEE
Q 001163 348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEV----GSRERIAVKSFKVWELGACSMPLQ-ASLSSDYTASVN 422 (1134)
Q Consensus 348 ~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~V~ 422 (1134)
..+....|.+.|++++|+|+|+.++|+|+.||.|+|||+ .+++.+..... ...+. .++. .....+|.+.|+
T Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~v~ 112 (425)
T 1r5m_A 37 KILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTI-IAELR---HPFALSASSGKTTNQVT 112 (425)
T ss_dssp EECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEE-EEEEE---CCCCCC------CBCEE
T ss_pred hheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccc-ccccc---ccccccccccCCCCceE
Confidence 334455588999999999999955689999999999999 88773110000 00000 0000 001234788999
Q ss_pred EEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEE
Q 001163 423 RVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI 502 (1134)
Q Consensus 423 ~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 502 (1134)
+++|+|++++|++|+.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..
T Consensus 113 ~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~ 186 (425)
T 1r5m_A 113 CLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQH 186 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEE
Confidence 999999999999999999999999 4555444 5788999999999999999 899999999999999999999999
Q ss_pred ecCCCcC---------------EEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEE
Q 001163 503 FEGHESP---------------VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF 567 (1134)
Q Consensus 503 ~~~h~~~---------------v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 567 (1134)
+..+... +.+++|++. ..+++++.|+.|++||+........+..+...|.+++|+|++++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 263 (425)
T 1r5m_A 187 FELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL 263 (425)
T ss_dssp ECCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred eeccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEE
Confidence 9888777 888888654 4689999999999999999888888888888999999999999999
Q ss_pred EEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcce
Q 001163 568 SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPC 647 (1134)
Q Consensus 568 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 647 (1134)
+++.++ .|++||+.+++.+..+..|.. .+.+++|+|++ .+++++.||.|++||+.+++.+..+..+ ...+.+
T Consensus 264 ~~~~d~----~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~ 335 (425)
T 1r5m_A 264 SASDDG----TLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD--GVPIFA 335 (425)
T ss_dssp EEETTS----CEEEECSSSBSCSEEECCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT--TCCEEE
T ss_pred EEcCCC----EEEEEECCCCccceEecCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC--CccEEE
Confidence 998654 599999999999999988776 89999999999 9999999999999999999999888865 568999
Q ss_pred EEEcCCCcEEEEEECCCcEEEEEccCCc
Q 001163 648 IRFNKEGILLAVSTNDNGIKILANADGI 675 (1134)
Q Consensus 648 v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 675 (1134)
++|+|++++|++++.||.|++|++.++.
T Consensus 336 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 336 GRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 9999999999999999999999998763
No 29
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.5e-36 Score=334.74 Aligned_cols=255 Identities=20% Similarity=0.306 Sum_probs=226.8
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 492 (1134)
.+.+|.+.|++++|+|++++|++|+.||+|++||+.++..+. .+.+|..+|.+++|+|+++ +|++|+.|++|++|
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEE
Confidence 367899999999999999999999999999999999988665 6788999999999999999 89999999999999
Q ss_pred ECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCc-eeeecCCCCCeeEEEECc-CCCEEEEEe
Q 001163 493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-RVDYDAPGHSSTMMAYSA-DGARLFSCG 570 (1134)
Q Consensus 493 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~-~~~~l~~~~ 570 (1134)
|+.+++++..+.+|...|.+++|+++ +.+|++|+.|++|++||++.... ...+..|...|.+++|+| ++..+++++
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPT--KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSS--SSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCC--CCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 99999999999999999999999764 48999999999999999987643 455778888999999999 678999998
Q ss_pred cCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcC--CCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceE
Q 001163 571 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT--TKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCI 648 (1134)
Q Consensus 571 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 648 (1134)
.|+ .|++||+.++.....+..++...+..+.|+| ++.+|++++.|+.|++||+++++++..+..| ...|.++
T Consensus 161 ~D~----~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h--~~~v~~~ 234 (304)
T 2ynn_A 161 LDR----TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH--MSNVSFA 234 (304)
T ss_dssp TTS----EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC--SSCEEEE
T ss_pred CCC----eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC--CCCEEEE
Confidence 654 6999999988877777666555888899986 6789999999999999999999999999865 6689999
Q ss_pred EEcCCCcEEEEEECCCcEEEEEccCCceeEEEe
Q 001163 649 RFNKEGILLAVSTNDNGIKILANADGIRLLRTV 681 (1134)
Q Consensus 649 ~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 681 (1134)
+|+|++.+|++++.||+|++||..++ ...+.+
T Consensus 235 ~~~p~~~~l~s~s~Dg~i~iWd~~~~-~~~~~~ 266 (304)
T 2ynn_A 235 VFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTL 266 (304)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTC-CEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCC-ceeeec
Confidence 99999999999999999999999876 344433
No 30
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=341.24 Aligned_cols=211 Identities=16% Similarity=0.239 Sum_probs=177.2
Q ss_pred cccCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163 414 SSDYTA-SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (1134)
Q Consensus 414 ~~~h~~-~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 492 (1134)
+.+|.. .|.+++|+|+|++||+|+.|++|+|||+.++..........+|...|.+++|+|+++ +|++|+.|++|++|
T Consensus 11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~iw 88 (345)
T 3fm0_A 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCIW 88 (345)
T ss_dssp ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEEE
Confidence 578887 999999999999999999999999999998865433333578999999999999999 89999999999999
Q ss_pred ECCCC--ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEe
Q 001163 493 DAVTG--TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCG 570 (1134)
Q Consensus 493 d~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 570 (1134)
|+.++ +++..+.+|...|.+++|++ ++++|++++.|++|++||+......
T Consensus 89 ~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~-------------------------- 140 (345)
T 3fm0_A 89 KKNQDDFECVTTLEGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEEDEY-------------------------- 140 (345)
T ss_dssp EECCC-EEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECTTSCE--------------------------
T ss_pred EccCCCeEEEEEccCCCCCceEEEEeC--CCCEEEEEECCCeEEEEECCCCCCe--------------------------
Confidence 98876 46788999999999999965 4589999999999999998642110
Q ss_pred cCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEE
Q 001163 571 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF 650 (1134)
Q Consensus 571 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 650 (1134)
..+..+.+|.. .|.+++|+|++++|++++.|+.|++||..+++........+|...|.+++|
T Consensus 141 -----------------~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~ 202 (345)
T 3fm0_A 141 -----------------ECVSVLNSHTQ-DVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF 202 (345)
T ss_dssp -----------------EEEEEECCCCS-CEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred -----------------EEEEEecCcCC-CeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEE
Confidence 11223344554 789999999999999999999999999988865543333455779999999
Q ss_pred cCCCcEEEEEECCCcEEEEEcc
Q 001163 651 NKEGILLAVSTNDNGIKILANA 672 (1134)
Q Consensus 651 sp~~~~l~~~~~dg~i~iw~~~ 672 (1134)
+|+|++|++++.||+|++|+..
T Consensus 203 sp~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 203 DPSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEEE
T ss_pred CCCCCEEEEEeCCCeEEEeccc
Confidence 9999999999999999999864
No 31
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.5e-36 Score=340.49 Aligned_cols=287 Identities=15% Similarity=0.195 Sum_probs=254.4
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 493 (1134)
+.+|.+.|++++|+||+++||+|+.||+|+|||..+++... .+..|...|.+++|+|++. ++++|+.|+.+++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP 134 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence 67899999999999999999999999999999999887554 5778999999999999999 899999999999999
Q ss_pred CCCC------ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECc--CCCE
Q 001163 494 AVTG------TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA--DGAR 565 (1134)
Q Consensus 494 ~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~ 565 (1134)
+... .....+.+|...|.+++|+++ +..|++++.|++|++||+++.+....+..|...|.+++++| ++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNS--DMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 8654 345677889999999999654 47899999999999999999988888889999999999987 5789
Q ss_pred EEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCc
Q 001163 566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS 645 (1134)
Q Consensus 566 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 645 (1134)
+++++.|+ .|++||+++++.+..+.+|.. .|.+++|+|++++|++++.|++|++||+++++.+..+..+.....+
T Consensus 213 l~sgs~Dg----~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 213 FVSGGCDK----KAMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA 287 (354)
T ss_dssp EEEEETTS----CEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred EEEEeCCC----eEEEEECCCCcEEEEecCCCC-CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence 99998755 499999999999999998887 8999999999999999999999999999999888877665555578
Q ss_pred ceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCccccc
Q 001163 646 PCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAA 725 (1134)
Q Consensus 646 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 725 (1134)
.+++|+|++.+|++++.|+.|++||+.++. .+..+.
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~-~~~~l~------------------------------------------- 323 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGS-RVSILF------------------------------------------- 323 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCS-EEEEEC-------------------------------------------
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCCc-eEEEEE-------------------------------------------
Confidence 899999999999999999999999987762 222221
Q ss_pred ccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeee
Q 001163 726 MVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK 804 (1134)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~ 804 (1134)
+|...|.+++|+|+|++|++++.|+.++||+
T Consensus 324 ------------------------------------------------~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 324 ------------------------------------------------GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ------------------------------------------------CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred ------------------------------------------------CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 2778899999999999999999999999994
No 32
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=9.6e-36 Score=330.38 Aligned_cols=290 Identities=18% Similarity=0.302 Sum_probs=253.7
Q ss_pred EEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163 350 VMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 428 (1134)
Q Consensus 350 ~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 428 (1134)
..++. |...|++++|+|+|+ ++++|+.||.|+|||+.+++.... +.+|...|.+++|+|
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~~~ 75 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAWSS 75 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECT
T ss_pred EEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEEcC
Confidence 44444 999999999999999 568999999999999998876543 578999999999999
Q ss_pred CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCc
Q 001163 429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES 508 (1134)
Q Consensus 429 d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 508 (1134)
++++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|+.|++||+.+++.+..+..|..
T Consensus 76 ~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 150 (312)
T 4ery_A 76 DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSD 150 (312)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred CCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCCC
Confidence 99999999999999999999988665 6889999999999999999 899999999999999999999999999999
Q ss_pred CEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec-CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC
Q 001163 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (1134)
Q Consensus 509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 587 (1134)
+|.+++|++ ++.++++++.|+.|++||+.+.+....+. .+...+..++|+|+++++++++.++ .|++||+.++
T Consensus 151 ~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~ 224 (312)
T 4ery_A 151 PVSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN----TLKLWDYSKG 224 (312)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTT----EEEEEETTTT
T ss_pred cEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCC----eEEEEECCCC
Confidence 999999965 45899999999999999999877666554 3455799999999999999998644 6999999999
Q ss_pred eeEEEecCCCCCc--eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEE--CC
Q 001163 588 AVKRTYHGLGKRS--VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST--ND 663 (1134)
Q Consensus 588 ~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~--~d 663 (1134)
+.+..+.+|.... +......+++.++++++.||.|++||+.+++.+..+..| ...|.+++|+|++.++++++ .|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~p~~~~l~s~~~~~d 302 (312)
T 4ery_A 225 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH--TDVVISTACHPTENIIASAALEND 302 (312)
T ss_dssp EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC--SSCEEEEEECSSSSEEEEEECTTT
T ss_pred cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc--CCcEEEEeecCcCCceEEEEccCC
Confidence 9999998876522 222334467889999999999999999999999888755 67899999999999999987 69
Q ss_pred CcEEEEEcc
Q 001163 664 NGIKILANA 672 (1134)
Q Consensus 664 g~i~iw~~~ 672 (1134)
+.|++|+..
T Consensus 303 ~~i~~W~~d 311 (312)
T 4ery_A 303 KTIKLWKSD 311 (312)
T ss_dssp CCEEEEECC
T ss_pred ccEEEecCC
Confidence 999999853
No 33
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-36 Score=350.96 Aligned_cols=348 Identities=13% Similarity=0.184 Sum_probs=273.3
Q ss_pred ccCCCCEEEEEEcCCCC-EEEEEeCCCEEEEEEc----cCCce------eeee-eeee------cCCCCEEEEEEecCCC
Q 001163 415 SDYTASVNRVMWSPDGT-LFGVAYSKHIVHLYTY----HGGDE------LRNH-LEIE------AHVGSVNDLAFSYPNK 476 (1134)
Q Consensus 415 ~~h~~~V~~l~~spd~~-~las~s~dg~v~iwd~----~~~~~------~~~~-~~l~------~h~~~V~~v~~s~~~~ 476 (1134)
..|.+.|++++|+|+++ +||+|+.||.|++||+ .+++. .... ..+. +|.+.|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45679999999999999 9999999999999999 88772 2211 1112 2688999999999999
Q ss_pred ceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCC---
Q 001163 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHS--- 553 (1134)
Q Consensus 477 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--- 553 (1134)
+|++++.|+.|++|| .+++.+..+.+|...|.+++|++ ++.+|++++.|+.|++||+.+......+..+...
T Consensus 122 --~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 122 --SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp --EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred --EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 899999999999999 78899999999999999999965 4589999999999999999988777777666655
Q ss_pred ------------eeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCe
Q 001163 554 ------------STMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM 621 (1134)
Q Consensus 554 ------------v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 621 (1134)
+.+++|++++. +++++.+ +.|++||+.+++.+..+..|.. .+.+++|+|++++|++++.||.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----g~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~ 270 (425)
T 1r5m_A 197 INAENHSGDGSLGVDVEWVDDDK-FVIPGPK----GAIFVYQITEKTPTGKLIGHHG-PISVLEFNDTNKLLLSASDDGT 270 (425)
T ss_dssp ---------CCCBSCCEEEETTE-EEEECGG----GCEEEEETTCSSCSEEECCCSS-CEEEEEEETTTTEEEEEETTSC
T ss_pred eeeccccCCcceeeEEEEcCCCE-EEEEcCC----CeEEEEEcCCCceeeeeccCCC-ceEEEEECCCCCEEEEEcCCCE
Confidence 89999999865 6666553 3599999999999999988876 8999999999999999999999
Q ss_pred EEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccc
Q 001163 622 IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPA 701 (1134)
Q Consensus 622 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1134)
|++||+.+++.+..+..+ ...|.+++|+|++ ++++++.||.|++||+.++ .....+..
T Consensus 271 i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~------------------ 328 (425)
T 1r5m_A 271 LRIWHGGNGNSQNCFYGH--SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN-TLLALSIV------------------ 328 (425)
T ss_dssp EEEECSSSBSCSEEECCC--SSCEEEEEEETTT-EEEEEETTSEEEEEETTTT-EEEEEEEC------------------
T ss_pred EEEEECCCCccceEecCC--CccEEEEEECCCC-EEEEEeCCCcEEEEECCCC-cEeEeccc------------------
Confidence 999999999998888754 6689999999999 9999999999999998776 22222211
Q ss_pred cccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEE
Q 001163 702 IGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSR 781 (1134)
Q Consensus 702 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~ 781 (1134)
|...|.+
T Consensus 329 -------------------------------------------------------------------------~~~~i~~ 335 (425)
T 1r5m_A 329 -------------------------------------------------------------------------DGVPIFA 335 (425)
T ss_dssp -------------------------------------------------------------------------TTCCEEE
T ss_pred -------------------------------------------------------------------------CCccEEE
Confidence 4566788
Q ss_pred EEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEe
Q 001163 782 LIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSA 861 (1134)
Q Consensus 782 l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~ 861 (1134)
++|+|+++++++++.||.+++|++... .... ..+ ...
T Consensus 336 ~~~s~~~~~l~~~~~dg~i~i~~~~~~----------------------~~~~------------~~~---------~~~ 372 (425)
T 1r5m_A 336 GRISQDGQKYAVAFMDGQVNVYDLKKL----------------------NSKS------------RSL---------YGN 372 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECHHH----------------------HC-----------------------------
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCCC----------------------ccce------------eee---------ecc
Confidence 888888888888888888888875421 1000 000 000
Q ss_pred eCCeEEEEEccCCeEEEEecCCCC--CeEEEEEcCCCCcEEEEEeCCCcEEEEEcc
Q 001163 862 SGGKISLFNMMTFKTMTTFMPPPP--AATFLAFHPQDNNIIAIGMEDSSIQIYNVR 915 (1134)
Q Consensus 862 sdg~i~lwd~~~~~~~~~~~~~~~--~v~~l~~sp~~~~~la~g~~dg~i~iwd~~ 915 (1134)
.++ +++....+.+..+..|.. .|++++|+| ++++|++++.||.|++|++.
T Consensus 373 ~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 373 RDG---ILNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ---------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCCEEEECC
T ss_pred ccc---ccCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceEEEEeec
Confidence 122 222333457788888876 999999999 89999999999999999985
No 34
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.1e-37 Score=350.27 Aligned_cols=295 Identities=16% Similarity=0.214 Sum_probs=252.4
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 493 (1134)
+.+|.+.|++++|+|++++||+|+.|++|+|||+.+++... .+.+|...|.+++|+|+++ +|++|+.|+.+++||
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFN 136 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEEE
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEE
Confidence 78999999999999999999999999999999999987655 6888999999999999999 899999999999999
Q ss_pred CCCCc-------eeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee-----cCCCCCeeEEEECc
Q 001163 494 AVTGT-------KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-----DAPGHSSTMMAYSA 561 (1134)
Q Consensus 494 ~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~s~ 561 (1134)
+.+.. ....+.+|.+.|.++.|.+..+ ..|++|+.|++|++||+.++.....+ ..|...|.+++|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE-TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSS-SCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCCC-CEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 87532 3456789999999999976543 67999999999999999988776655 45667899999977
Q ss_pred -CCCEEEEEecCCCCCeEEEEEeCC-CCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC
Q 001163 562 -DGARLFSCGTNKEGESYLVEWNES-EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD 639 (1134)
Q Consensus 562 -~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 639 (1134)
+++++++++.|+ .|++||++ .++.+..+.+|.. .|.+++|+|++++|++++.||+|++||+++++.+..+..+
T Consensus 216 ~~~~~l~sgs~D~----~v~~wd~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~ 290 (380)
T 3iz6_a 216 LNANMFISGSCDT----TVRLWDLRITSRAVRTYHGHEG-DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE 290 (380)
T ss_dssp SSCCEEEEEETTS----CEEEEETTTTCCCCEEECCCSS-CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEEEEEECCC----eEEEEECCCCCcceEEECCcCC-CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccc
Confidence 889999998755 59999998 5578888998887 8999999999999999999999999999999998887653
Q ss_pred CC-----CCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccccccccccccccccc
Q 001163 640 GG-----LQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGT 714 (1134)
Q Consensus 640 ~~-----~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 714 (1134)
.. ...|.+++|+|+|++|++|+.||.|++||...+. ....+..
T Consensus 291 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~~~~~~------------------------------- 338 (380)
T 3iz6_a 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE-MVLNLGT------------------------------- 338 (380)
T ss_dssp CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC-EEEEECC-------------------------------
T ss_pred ccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc-eEEEEec-------------------------------
Confidence 22 2348899999999999999999999999987662 2222210
Q ss_pred CcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeee
Q 001163 715 SLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILAL 794 (1134)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~ 794 (1134)
...+|...|.+++|+|+|++|+++
T Consensus 339 --------------------------------------------------------~~~~h~~~v~~l~~s~dg~~l~sg 362 (380)
T 3iz6_a 339 --------------------------------------------------------LQNSHEGRISCLGLSSDGSALCTG 362 (380)
T ss_dssp --------------------------------------------------------SCSSCCCCCCEEEECSSSSEEEEE
T ss_pred --------------------------------------------------------ccCCCCCceEEEEECCCCCEEEEe
Confidence 001378889999999999999999
Q ss_pred ccCCeEEeeecCC
Q 001163 795 ASNAVHKLWKWPR 807 (1134)
Q Consensus 795 ~~dg~i~vw~~~~ 807 (1134)
+.|+.|++|++..
T Consensus 363 s~D~~i~iW~~~~ 375 (380)
T 3iz6_a 363 SWDKNLKIWAFSG 375 (380)
T ss_dssp CTTSCEEEEECCS
T ss_pred eCCCCEEEEecCC
Confidence 9999999998763
No 35
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.4e-36 Score=343.48 Aligned_cols=309 Identities=17% Similarity=0.243 Sum_probs=249.4
Q ss_pred eeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163 348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1134)
Q Consensus 348 ~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (1134)
++.+.++|...|++++|||||++ +|+|+ ++.++||++.+++.+....-.--. ..............+...|.+++|+
T Consensus 56 ~~~~~~~h~~~V~~v~fspdg~~-la~g~-~~~v~i~~~~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 56 ELHKSLDHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp EEEEEEECSSCCCEEEECTTSSE-EEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred eeEEecCCCCEEEEEEECCCCCE-EEEEc-CCcEEEEEecCCCEEEEecCcccc-ccccccccccccCCCceeEEEEEEC
Confidence 34566789999999999999995 57776 689999999998866431100000 0000000001112344569999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCC
Q 001163 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 507 (1134)
Q Consensus 428 pd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~ 507 (1134)
|||++||+|+.|+.|+|||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+.++++...+. +.
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~ 206 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IE 206 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cC
Confidence 999999999999999999999987655 6889999999999999999 79999999999999999999988886 56
Q ss_pred cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee-------cCCCCCeeEEEECcCCCEEEEEecCCCCCeEEE
Q 001163 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-------DAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 580 (1134)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 580 (1134)
..+.++++++ .++.+|++++.|+.|++||+.+......+ ..|...|.+++|+|++++|++++.|+ .|+
T Consensus 207 ~~v~~~~~~~-~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~----~v~ 281 (393)
T 1erj_A 207 DGVTTVAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR----SVK 281 (393)
T ss_dssp SCEEEEEECS-TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS----EEE
T ss_pred CCcEEEEEEC-CCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC----EEE
Confidence 7799999875 25589999999999999999887665554 45677899999999999999998654 699
Q ss_pred EEeCCCC------------eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceE
Q 001163 581 EWNESEG------------AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCI 648 (1134)
Q Consensus 581 ~wd~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 648 (1134)
+||+.+. .+...+.+|.. .|.+++|+|++.+|++++.||.|++||..+++.+..+..| ...|.++
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h--~~~v~~v 358 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH--RNSVISV 358 (393)
T ss_dssp EEEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEE
T ss_pred EEECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC--CCCEEEE
Confidence 9998753 34566777776 8999999999999999999999999999999999988865 6689999
Q ss_pred EEcC------CCcEEEEEECCCcEEEEEccC
Q 001163 649 RFNK------EGILLAVSTNDNGIKILANAD 673 (1134)
Q Consensus 649 ~~sp------~~~~l~~~~~dg~i~iw~~~~ 673 (1134)
+|++ ++.+|++|+.||+|++|++..
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9886 688999999999999999864
No 36
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-37 Score=360.49 Aligned_cols=298 Identities=15% Similarity=0.246 Sum_probs=249.4
Q ss_pred eecCCCeeEEEEcCCCCeEEEEE----------eCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEE
Q 001163 353 LNQGSAVKSMDFHPVQQILLVVG----------TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVN 422 (1134)
Q Consensus 353 ~~h~~~V~~v~fsp~g~~lla~g----------s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 422 (1134)
+.+...|.+++|||+|+.++++| +.|+.|+|||+.+++..... ....|...|.
T Consensus 9 l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~-----------------~~~~~~~~v~ 71 (416)
T 2pm9_A 9 LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPI-----------------ASLQVDSKFN 71 (416)
T ss_dssp -CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCS-----------------CCCCCSSCEE
T ss_pred HhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEE-----------------EEEecCCceE
Confidence 34556789999999998788999 88999999999987632100 1245889999
Q ss_pred EEEEcCCCCEEEEEeCCCEEEEEEccCCce-eeeeeeeecCCCCEEEEEEecC-CCceEEEEEeCCCeEEEEECCCCc--
Q 001163 423 RVMWSPDGTLFGVAYSKHIVHLYTYHGGDE-LRNHLEIEAHVGSVNDLAFSYP-NKQLSVVTCGEDRVIKVWDAVTGT-- 498 (1134)
Q Consensus 423 ~l~~spd~~~las~s~dg~v~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~~-~~~~~l~s~s~d~~i~iwd~~~~~-- 498 (1134)
+++|+|++++|++|+.||.|++||+.+... ......+.+|...|++++|+|+ +. +|++++.|+.|++||+.+++
T Consensus 72 ~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~ 149 (416)
T 2pm9_A 72 DLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTES 149 (416)
T ss_dssp EEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSC
T ss_pred EEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccc
Confidence 999999999999999999999999987211 1123367899999999999998 66 79999999999999999887
Q ss_pred ----eeEE---ecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCC------CCCeeEEEECcCC-C
Q 001163 499 ----KQYI---FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP------GHSSTMMAYSADG-A 564 (1134)
Q Consensus 499 ----~~~~---~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~s~~~-~ 564 (1134)
.... +.+|...|.+++|+++. +.++++++.|+.|++||++..+....+..+ ...+.+++|+|++ .
T Consensus 150 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (416)
T 2pm9_A 150 PSNYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST 228 (416)
T ss_dssp TTTCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT
T ss_pred cccccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC
Confidence 3333 46799999999997652 479999999999999999988777777766 6789999999997 5
Q ss_pred EEEEEecCCCCCeEEEEEeCCCC-eeEEEec-CCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecCCC
Q 001163 565 RLFSCGTNKEGESYLVEWNESEG-AVKRTYH-GLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG 641 (1134)
Q Consensus 565 ~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 641 (1134)
++++++.++ .+..|++||++++ .....+. +|.. .+.+++|+| ++++|++++.||.|++||+.+++.+..+..|
T Consensus 229 ~l~~~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~-- 304 (416)
T 2pm9_A 229 RVATATGSD-NDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR-- 304 (416)
T ss_dssp EEEEEECCS-SSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS--
T ss_pred EEEEEECCC-CCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC--
Confidence 788777543 1225999999986 6667777 6665 899999999 8999999999999999999999999998865
Q ss_pred CCCcceEEEcCCC-cEEEEEECCCcEEEEEccCC
Q 001163 642 LQASPCIRFNKEG-ILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 642 ~~~v~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~ 674 (1134)
...|.+++|+|++ .+|++++.||.|++|++.+.
T Consensus 305 ~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 305 GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred CCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 5689999999998 89999999999999999876
No 37
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=4.1e-35 Score=379.29 Aligned_cols=524 Identities=11% Similarity=0.046 Sum_probs=378.4
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
+...+.+.+|||+ ++ |..+. +.|.+|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~i-af~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--RI-IFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--EE-EEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--EE-EEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 3456889999964 44 44443 689999998876433 567999999999999999999
Q ss_pred EEeCC------CEEEEEEccCCceeeeeeeeecCCCCE-------EEEEEecCCCceEEEEEeCC------CeEEEEECC
Q 001163 435 VAYSK------HIVHLYTYHGGDELRNHLEIEAHVGSV-------NDLAFSYPNKQLSVVTCGED------RVIKVWDAV 495 (1134)
Q Consensus 435 s~s~d------g~v~iwd~~~~~~~~~~~~l~~h~~~V-------~~v~~s~~~~~~~l~s~s~d------~~i~iwd~~ 495 (1134)
+++.+ ..|++||+.+++. + .+..|...+ ..++|+|||+ ++++++.+ ..|.+||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~-~---~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI-K---RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE-E---ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe-E---EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88653 4799999998763 2 477888888 9999999998 67777754 468888887
Q ss_pred CCceeEEecCCCcCEEEEeccccCCccEEEEecC------------CCcEEEEecCCCCceeeecCCCCCeeEEEECcCC
Q 001163 496 TGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT------------DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG 563 (1134)
Q Consensus 496 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 563 (1134)
+++... +..+.. ..++|++ | ++++++. +...++|.....+....+..+...+.++.|+++
T Consensus 143 ~g~~~~-l~~~~~--~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d- 214 (1045)
T 1k32_A 143 GINFVP-LNLGPA--THILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH- 214 (1045)
T ss_dssp GTEEEE-CCSCSC--SEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred CCCeEE-ecCCCc--ceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence 776543 333322 3455654 5 7777642 345667754444445556777889999999988
Q ss_pred CEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCC---
Q 001163 564 ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG--- 640 (1134)
Q Consensus 564 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--- 640 (1134)
..++++.. ++...|+.++...+ ....+..+. .+...+|+|+|+.++.+. ++.|++||.... .+..+..+.
T Consensus 215 ~l~~~~~~--dg~~~l~~~~~~g~-~~~~l~~~~--~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~~ 287 (1045)
T 1k32_A 215 RIYFITDI--DGFGQIYSTDLDGK-DLRKHTSFT--DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLES 287 (1045)
T ss_dssp EEEEEECT--TSSCEEEEEETTSC-SCEECCCCC--SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCCB
T ss_pred EEEEEEec--cCceEEEEEeCCCC-cceEecCCC--CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCcccc
Confidence 44444433 23333444444333 344455444 355679999999888874 899999999544 343443321
Q ss_pred ------CCCCcceEEEc-CCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccc
Q 001163 641 ------GLQASPCIRFN-KEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVG 713 (1134)
Q Consensus 641 ------~~~~v~~v~~s-p~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 713 (1134)
+...+.+++|+ |+|+.|++++ ++.+.+|+..++. . ..+.
T Consensus 288 ~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-~-~~~~------------------------------- 333 (1045)
T 1k32_A 288 PEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-V-LKVP------------------------------- 333 (1045)
T ss_dssp CCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-E-EECS-------------------------------
T ss_pred cccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-e-EEcc-------------------------------
Confidence 12358899999 9999999888 7899999876551 1 1110
Q ss_pred cCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccc-cEEEEEEecCCceee
Q 001163 714 TSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAM-RVSRLIYTNSGLAIL 792 (1134)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~spdg~~l~ 792 (1134)
.+.. .+..++|+ ||+.++
T Consensus 334 ------------------------------------------------------------~~~~~~~~~~~~s-dg~~l~ 352 (1045)
T 1k32_A 334 ------------------------------------------------------------EPLRIRYVRRGGD-TKVAFI 352 (1045)
T ss_dssp ------------------------------------------------------------CCSCEEEEEECSS-SEEEEE
T ss_pred ------------------------------------------------------------CCCcceEEeeeEc-CCCeEE
Confidence 1333 67889999 999999
Q ss_pred eeccCCeEE-eeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEE
Q 001163 793 ALASNAVHK-LWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFN 870 (1134)
Q Consensus 793 ~~~~dg~i~-vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd 870 (1134)
.++.++.+. +|++. ++.... +.+ |...+..++|||||++|++++ ++.|++||
T Consensus 353 ~~s~~~~l~~~~d~~----------------------~~~~~~--l~~--~~~~~~~~~~SpDG~~la~~~~~~~v~~~d 406 (1045)
T 1k32_A 353 HGTREGDFLGIYDYR----------------------TGKAEK--FEE--NLGNVFAMGVDRNGKFAVVANDRFEIMTVD 406 (1045)
T ss_dssp EEETTEEEEEEEETT----------------------TCCEEE--CCC--CCCSEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEECCCceEEEEECC----------------------CCCceE--ecC--CccceeeeEECCCCCEEEEECCCCeEEEEE
Confidence 888877776 76543 333222 222 678899999999999999988 78999999
Q ss_pred ccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC----------cEEEEEcccceEEEeccCccCceEEEEEeeCCC
Q 001163 871 MMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDS----------SIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLN 940 (1134)
Q Consensus 871 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg----------~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 940 (1134)
+.+++....+.+|...+.+++|+| ||++|++++.++ .|++||+.+++ +..+..|...+..++|+|||+
T Consensus 407 ~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~ 484 (1045)
T 1k32_A 407 LETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSK 484 (1045)
T ss_dssp TTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSC
T ss_pred CCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCC
Confidence 999998888878889999999999 899888887644 99999999888 677888988999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCccccc---ee--eee-----------------------cCCC-------CCCCCCceEEEE
Q 001163 941 VLVSSGADSQLCVWSTDGWEKQAS---KF--LTI-----------------------PNGR-------TASALADTRVQF 985 (1134)
Q Consensus 941 ~l~s~s~Dg~i~iwd~~~~~~~~~---~~--~~~-----------------------~~~~-------~~~~~~v~~l~f 985 (1134)
+|++++.++...+|+......... .. +.. ..+. ......+..++|
T Consensus 485 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~ 564 (1045)
T 1k32_A 485 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIP 564 (1045)
T ss_dssp EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEE
T ss_pred EEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEE
Confidence 999999988888887543221000 00 000 0000 001145788999
Q ss_pred cCCCCEEEE--------------EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCC
Q 001163 986 HLDQTHLLA--------------VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAST 1051 (1134)
Q Consensus 986 s~dg~~l~~--------------~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~ 1051 (1134)
+|||+++++ .....|.+||+.+++... +. ..+.+++|||||++|++++.| .|++||+.+
T Consensus 565 s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~-----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~ 637 (1045)
T 1k32_A 565 LESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-VK-----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLE 637 (1045)
T ss_dssp CSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-EE-----EEEEEEEECTTSCEEEEEETT-SCEEEEESS
T ss_pred cCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEE-ee-----cCcceEEECCCCCEEEEEcCC-cEEEEeCcc
Confidence 999997774 134678999998887532 22 568899999999999999876 799999988
Q ss_pred Cc
Q 001163 1052 LR 1053 (1134)
Q Consensus 1052 ~~ 1053 (1134)
++
T Consensus 638 ~~ 639 (1045)
T 1k32_A 638 KP 639 (1045)
T ss_dssp CT
T ss_pred Cc
Confidence 87
No 38
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.1e-35 Score=327.90 Aligned_cols=296 Identities=17% Similarity=0.264 Sum_probs=251.0
Q ss_pred ccccCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEEccCCce--eeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeE
Q 001163 413 LSSDYTASVNRVMWSPDG-TLFGVAYSKHIVHLYTYHGGDE--LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI 489 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~spd~-~~las~s~dg~v~iwd~~~~~~--~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i 489 (1134)
.+.+|.+.|++++|+|++ ++|++|+.|++|++||+.+... -.....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 378999999999999965 8999999999999999975321 123446889999999999999999 89999999999
Q ss_pred EEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcC------C
Q 001163 490 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD------G 563 (1134)
Q Consensus 490 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~------~ 563 (1134)
++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||++ ......+..|...+.++.++|. +
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 9999999999999999999999999865 45899999999999999996 4556667788889999999985 4
Q ss_pred CEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCC
Q 001163 564 ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQ 643 (1134)
Q Consensus 564 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 643 (1134)
..+++++.++ .|++||+.+++....+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..+ .
T Consensus 167 ~~l~s~~~d~----~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~ 238 (319)
T 3frx_A 167 VTIISAGNDK----MVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---D 238 (319)
T ss_dssp CEEEEEETTS----CEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---S
T ss_pred cEEEEEeCCC----EEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---C
Confidence 4888888654 599999999999999999887 8999999999999999999999999999999999888753 4
Q ss_pred CcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCccc
Q 001163 644 ASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPA 723 (1134)
Q Consensus 644 ~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 723 (1134)
.|.+++|+|++.++++++.+ .+++|++... .....+..+...
T Consensus 239 ~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~-~~~~~~~~~~~~------------------------------------ 280 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ-YLVDDLRPEFAG------------------------------------ 280 (319)
T ss_dssp CEEEEEECSSSSEEEEEETT-EEEEEEETTE-EEEEEECCCCTT------------------------------------
T ss_pred cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC-eeeeccCccccc------------------------------------
Confidence 79999999999999988765 5999998765 333333211000
Q ss_pred ccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEee
Q 001163 724 AAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLW 803 (1134)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw 803 (1134)
....+...+.+++|+|||++|++++.||.|+||
T Consensus 281 -----------------------------------------------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vW 313 (319)
T 3frx_A 281 -----------------------------------------------YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313 (319)
T ss_dssp -----------------------------------------------CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred -----------------------------------------------cccCcCcceeEEEECCCCCEEEEeecCceEEEE
Confidence 001255678999999999999999999999999
Q ss_pred ecC
Q 001163 804 KWP 806 (1134)
Q Consensus 804 ~~~ 806 (1134)
++.
T Consensus 314 d~~ 316 (319)
T 3frx_A 314 QVM 316 (319)
T ss_dssp EEE
T ss_pred EEe
Confidence 875
No 39
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-36 Score=333.13 Aligned_cols=298 Identities=15% Similarity=0.203 Sum_probs=231.8
Q ss_pred eeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEE
Q 001163 348 TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (1134)
Q Consensus 348 ~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 426 (1134)
++++.+. |...|++++|+|+ +||+|+.|++|+|||+.++.......+ ...+|...|.+++|
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~---------------~~~~h~~~v~~v~~ 66 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVL---------------DETAHKKAIRSVAW 66 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEE---------------CTTCCCSCEEEEEE
T ss_pred ccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEE---------------ecCCccCCEEEEEE
Confidence 3455665 9999999999998 679999999999999987532111000 01349999999999
Q ss_pred cCCCCEEEEEeCCCEEEEEEccCCc----eeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC----Cc
Q 001163 427 SPDGTLFGVAYSKHIVHLYTYHGGD----ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT----GT 498 (1134)
Q Consensus 427 spd~~~las~s~dg~v~iwd~~~~~----~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~----~~ 498 (1134)
+|++++||+|+.|++|+|||+.... .......+.+|...|.+++|+|+++ +|++|+.|++|++||+.. .+
T Consensus 67 sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~~ 144 (330)
T 2hes_X 67 RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEYE 144 (330)
T ss_dssp CTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCCE
T ss_pred CCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCeE
Confidence 9999999999999999999996432 1223346889999999999999999 899999999999999943 25
Q ss_pred eeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCC--CceeeecCCCCCeeEEEECcC--CCEEEEEecCCC
Q 001163 499 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL--GSRVDYDAPGHSSTMMAYSAD--GARLFSCGTNKE 574 (1134)
Q Consensus 499 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~~~~ 574 (1134)
++..+.+|...|.+++|+++ +.+|++++.|++|++||.... .....+..|...|.+++|+|+ +.+|++++.|+
T Consensus 145 ~~~~~~~h~~~v~~v~~~p~--~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~- 221 (330)
T 2hes_X 145 CISVLQEHSQDVKHVIWHPS--EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS- 221 (330)
T ss_dssp EEEEECCCSSCEEEEEECSS--SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTS-
T ss_pred EEEEeccCCCceEEEEECCC--CCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCC-
Confidence 67889999999999999764 489999999999999998765 455667888889999999998 67899988654
Q ss_pred CCeEEEEEeCCCC--------eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce--eEEEecCCCCC-
Q 001163 575 GESYLVEWNESEG--------AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL--LASIDADGGLQ- 643 (1134)
Q Consensus 575 ~~~~i~~wd~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~- 643 (1134)
.|++||+..+ .....+...+...|.+++|++++ .|++++.||.|++||..+++. +... ..++..
T Consensus 222 ---~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h~~~ 296 (330)
T 2hes_X 222 ---TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCHGVY 296 (330)
T ss_dssp ---CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTTTTS
T ss_pred ---eEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-ccccccc
Confidence 5999998765 44555655344489999999765 899999999999999988743 2222 223454
Q ss_pred CcceEEEcC--CCcEEEEEECCCcEEEEEccC
Q 001163 644 ASPCIRFNK--EGILLAVSTNDNGIKILANAD 673 (1134)
Q Consensus 644 ~v~~v~~sp--~~~~l~~~~~dg~i~iw~~~~ 673 (1134)
.|.+++|+| ++.+|++++.||+|++|++..
T Consensus 297 ~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 297 EINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred eEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 799999999 789999999999999999764
No 40
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3e-35 Score=326.38 Aligned_cols=290 Identities=19% Similarity=0.305 Sum_probs=255.2
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 493 (1134)
+.+|...|++++|+|++++||+|+.||.|++||+.+++... .+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIWD 93 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEE
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEEE
Confidence 67999999999999999999999999999999999887654 6789999999999999999 899999999999999
Q ss_pred CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCC
Q 001163 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (1134)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 573 (1134)
+.+++++..+.+|...|.+++|+++ +.+|++++.|+.|++||+++.+....+..+...|.+++|+|+++++++++.++
T Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
T 4ery_A 94 VSSGKCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171 (312)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSS--SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCcEEEEEcCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 9999999999999999999999654 48999999999999999999888888888888999999999999999998754
Q ss_pred CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEc-C
Q 001163 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN-K 652 (1134)
Q Consensus 574 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-p 652 (1134)
.|++||+.+++.+..+.......+..++|+|++++|++++.||.|++||+.+++.+..+..+..........++ +
T Consensus 172 ----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 172 ----LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp ----CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECS
T ss_pred ----cEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeC
Confidence 59999999999888887666668999999999999999999999999999999999888766443333334444 6
Q ss_pred CCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCC
Q 001163 653 EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND 732 (1134)
Q Consensus 653 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 732 (1134)
++.+|++++.||.|++||+.++ ..+..+.+
T Consensus 248 ~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~------------------------------------------------- 277 (312)
T 4ery_A 248 GGKWIVSGSEDNLVYIWNLQTK-EIVQKLQG------------------------------------------------- 277 (312)
T ss_dssp SSCEEEECCTTSCEEEEETTTC-CEEEEECC-------------------------------------------------
T ss_pred CCcEEEEECCCCEEEEEECCCc-hhhhhhhc-------------------------------------------------
Confidence 7899999999999999999876 33333322
Q ss_pred CccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeec--cCCeEEeeecC
Q 001163 733 SRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA--SNAVHKLWKWP 806 (1134)
Q Consensus 733 ~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~--~dg~i~vw~~~ 806 (1134)
|...|.+++|+|++..+++++ .|+.|++|+.+
T Consensus 278 ------------------------------------------h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 278 ------------------------------------------HTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ------------------------------------------CSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ------------------------------------------cCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 667899999999999999886 69999999753
No 41
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.4e-35 Score=333.51 Aligned_cols=299 Identities=18% Similarity=0.294 Sum_probs=240.4
Q ss_pred eEEEee-cCCCeeEEEE-----cC-CCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCE
Q 001163 349 VVMTLN-QGSAVKSMDF-----HP-VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASV 421 (1134)
Q Consensus 349 ~~~~~~-h~~~V~~v~f-----sp-~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 421 (1134)
+...+. |.+.|++++| ++ +++ +|++|+.|++|+|||+.+++...... .....+.+|...|
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~~------------~~~~~l~~h~~~V 79 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYFG------------IPHKALTGHNHFV 79 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBSE------------EEEEEECCCSSCE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccccc------------cccchhccCCCce
Confidence 344555 9999999999 77 787 67999999999999997654211000 0111368999999
Q ss_pred EEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE
Q 001163 422 NRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY 501 (1134)
Q Consensus 422 ~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 501 (1134)
.+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+. +....
T Consensus 80 ~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~-~~~~~ 153 (343)
T 2xzm_R 80 SDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNIL-GECKF 153 (343)
T ss_dssp EEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESS-SCEEE
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEecc-CCcee
Confidence 999999999999999999999999999988665 6889999999999999999 79999999999999987 44444
Q ss_pred Eec---CCCcCEEEEeccccCC--------ccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEe
Q 001163 502 IFE---GHESPVYSICPHHKEN--------IQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCG 570 (1134)
Q Consensus 502 ~~~---~h~~~v~~~~~~~~~~--------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 570 (1134)
... +|...|.+++|++... +.++++++.|+.|++||. .......+..|...|.+++|+|+|++|++++
T Consensus 154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs 232 (343)
T 2xzm_R 154 SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGG 232 (343)
T ss_dssp ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEc
Confidence 433 7999999999976532 268999999999999994 3445556778888999999999999999998
Q ss_pred cCCCCCeEEEEEeCC-CCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeE--EEec---------
Q 001163 571 TNKEGESYLVEWNES-EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA--SIDA--------- 638 (1134)
Q Consensus 571 ~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~--------- 638 (1134)
.|+ .|++||+. .......+.. . ..+.+++|+|++.++++ +.|+.|++||+.+++... .+..
T Consensus 233 ~dg----~v~iwd~~~~~~~~~~~~~-~-~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 305 (343)
T 2xzm_R 233 KDK----KLLIWDILNLTYPQREFDA-G-STINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQ 305 (343)
T ss_dssp TTC----EEEEEESSCCSSCSEEEEC-S-SCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTB
T ss_pred CCC----eEEEEECCCCcccceeecC-C-CcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhh
Confidence 644 69999994 4444444432 2 26999999999987764 557889999998876544 3331
Q ss_pred CCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 639 DGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 639 ~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
.++...|.+++|+|+|++|++|+.||.|++|++.++
T Consensus 306 ~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 306 KGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred cCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 144567899999999999999999999999998764
No 42
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2e-35 Score=332.10 Aligned_cols=286 Identities=13% Similarity=0.152 Sum_probs=242.7
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
+...|.+++|||||+.+ +++..++.+.+|+......... ..+|...|++++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~~~-~~~~~~~~~~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQ-PVPFPPDALIGPGIPRHARQIN-------------------TLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSCEE-ECCCCTTSSSSTTCCSEEEEEE-------------------EECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCCEE-EeecCCCcEeccccCCccccce-------------------eccCCCceEEEEEecCCcEEE
Confidence 56789999999999954 5666666666665544322211 347999999999999999999
Q ss_pred EEeCCCEEEEEEccCCceeeeeeeee--cCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc--eeEEecCCCcCE
Q 001163 435 VAYSKHIVHLYTYHGGDELRNHLEIE--AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT--KQYIFEGHESPV 510 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~~~~~~l~--~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~h~~~v 510 (1134)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+.+|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 999 9999999999876554443444 7999999999999999 89999999999999999887 667788999999
Q ss_pred EEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeE
Q 001163 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590 (1134)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 590 (1134)
.+++|++ ++.++++++.|+.|++||+.+.+....+..+...+.+++|+|+++++++++.+ +.|++||+++++.+
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD----NTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT----SEEEEEETTTTEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC----CcEEEEECCCCceE
Confidence 9999965 45899999999999999999888888888888899999999999999999764 46999999999988
Q ss_pred EEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEE
Q 001163 591 RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA 670 (1134)
Q Consensus 591 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~ 670 (1134)
..+... ..+.+++|+|+++++++++.+|.|++||+.+++... +. .+...+.+++|+|++++|++++.||.|++|+
T Consensus 219 ~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 219 QQHDFT--SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEECS--SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-EC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeecCC--CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-Ec--CCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 877532 379999999999999999999999999999887643 33 4467899999999999999999999999999
Q ss_pred ccCC
Q 001163 671 NADG 674 (1134)
Q Consensus 671 ~~~~ 674 (1134)
+.++
T Consensus 294 ~~~~ 297 (337)
T 1gxr_A 294 TPYG 297 (337)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 9876
No 43
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.3e-35 Score=329.09 Aligned_cols=302 Identities=19% Similarity=0.258 Sum_probs=257.7
Q ss_pred eeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEE
Q 001163 348 TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (1134)
Q Consensus 348 ~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 426 (1134)
.+..+|. |.+.|++|+|+|++..+||+|+.||+|+|||+.+++...... ...+.+|...|.+++|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~--------------~~~l~~h~~~V~~~~~ 94 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIP--------------QRALRGHSHFVSDVVI 94 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEE--------------EEEECCCSSCEEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccccee--------------eEEEeCCCCCEEEEEE
Confidence 3445665 999999999999865578999999999999998765432211 1236789999999999
Q ss_pred cCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCcee-EEecC
Q 001163 427 SPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ-YIFEG 505 (1134)
Q Consensus 427 spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~ 505 (1134)
+|+|++|++|+.|+.|++|+...+.... ....+...+..+.+++++. +|++++.|+.+++||+...... ..+.+
T Consensus 95 s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~ 169 (340)
T 4aow_A 95 SSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDES 169 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSS
T ss_pred CCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEecc
Confidence 9999999999999999999999877554 4667888999999999998 7999999999999998766543 45678
Q ss_pred CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC
Q 001163 506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 585 (1134)
Q Consensus 506 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 585 (1134)
|...+..++|.+.+...++++++.|+.|++||+........+..+...|.+++|+|++++|++++.|+ .|++||+.
T Consensus 170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg----~i~iwd~~ 245 (340)
T 4aow_A 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG----QAMLWDLN 245 (340)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTC----EEEEEETT
T ss_pred ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCC----eEEEEEec
Confidence 99999999998887778899999999999999999888888888999999999999999999998644 69999999
Q ss_pred CCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEec-------CCCCCCcceEEEcCCCcEEE
Q 001163 586 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA-------DGGLQASPCIRFNKEGILLA 658 (1134)
Q Consensus 586 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~v~~v~~sp~~~~l~ 658 (1134)
+++.+..+..+. .+..++|+|++. +++++.|+.|++||++++..+..+.. ..+...|.+++|+|+|++|+
T Consensus 246 ~~~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 322 (340)
T 4aow_A 246 EGKHLYTLDGGD--IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322 (340)
T ss_dssp TTEEEEEEECSS--CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEE
T ss_pred cCceeeeecCCc--eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEE
Confidence 999999888764 789999999875 55667799999999999887776642 24567899999999999999
Q ss_pred EEECCCcEEEEEccCCc
Q 001163 659 VSTNDNGIKILANADGI 675 (1134)
Q Consensus 659 ~~~~dg~i~iw~~~~~~ 675 (1134)
+|+.||.|+||++.+|.
T Consensus 323 sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 323 AGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEETTSCEEEEEEEC--
T ss_pred EEeCCCEEEEEeCCCcC
Confidence 99999999999999873
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=9.4e-35 Score=326.52 Aligned_cols=317 Identities=14% Similarity=0.158 Sum_probs=266.1
Q ss_pred ceeeeEeCCCCCCcccccCCCC--------CceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeee
Q 001163 324 NILPVAYTPQSLGQSSYSTDDL--------PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVK 395 (1134)
Q Consensus 324 ~i~~~~~s~~~~~l~~~~~d~~--------~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~ 395 (1134)
.|.+++|+|+|+.++....++. .......++|...|++++|+|+++ ++++++ ||.|++||+.+++.....
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~-dg~i~iw~~~~~~~~~~~ 88 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSPV 88 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSCS
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCc-EEEEcC-CCeEEEEECCCCCceeee
Confidence 4668999999999875543321 234556677999999999999999 457777 999999999887643210
Q ss_pred ceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCC
Q 001163 396 SFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPN 475 (1134)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~ 475 (1134)
......+|...|.+++|+|++++|++++.|+.|++||+.+++.. ....+.+|...|.+++|+|++
T Consensus 89 --------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~ 153 (337)
T 1gxr_A 89 --------------SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDS 153 (337)
T ss_dssp --------------EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTS
T ss_pred --------------ecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-eeeecccCCCceEEEEECCCC
Confidence 00012379999999999999999999999999999999987632 233578899999999999999
Q ss_pred CceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCee
Q 001163 476 KQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSST 555 (1134)
Q Consensus 476 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~ 555 (1134)
+ ++++++.|+.|++||+.+++.+..+.+|...|.+++|++ ++.++++++.|+.|++||++..+....+. +...+.
T Consensus 154 ~--~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~ 228 (337)
T 1gxr_A 154 K--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIF 228 (337)
T ss_dssp S--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEE
T ss_pred C--EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC--CCCEEEEEecCCcEEEEECCCCceEeeec-CCCceE
Confidence 9 899999999999999999999999999999999999966 45899999999999999998876665554 466899
Q ss_pred EEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEE
Q 001163 556 MMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLAS 635 (1134)
Q Consensus 556 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 635 (1134)
+++|+|+++++++++.++ .|++||+.+++.. .+..|.. .+.+++|+|++++|++++.||.|++||+.+++.+..
T Consensus 229 ~~~~s~~~~~l~~~~~~~----~i~~~~~~~~~~~-~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~ 302 (337)
T 1gxr_A 229 SLGYCPTGEWLAVGMESS----NVEVLHVNKPDKY-QLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ 302 (337)
T ss_dssp EEEECTTSSEEEEEETTS----CEEEEETTSSCEE-EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEEECCCCCEEEEEcCCC----cEEEEECCCCCeE-EEcCCcc-ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE
Confidence 999999999999997644 4999999988764 4566655 899999999999999999999999999999988865
Q ss_pred EecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163 636 IDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (1134)
Q Consensus 636 ~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 671 (1134)
.. +...+.+++|+|++++|++++.||.|++|++
T Consensus 303 ~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 303 SK---ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EE---CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ec---CCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 53 2567999999999999999999999999986
No 45
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=6.7e-35 Score=327.89 Aligned_cols=293 Identities=12% Similarity=0.206 Sum_probs=232.0
Q ss_pred eeEEEecCCCCCceEEEEE-----cC-CCCEEEEEeCCCeEEEEEcCCC-------ceeEEEecCCCCCCcceEEEcCCC
Q 001163 588 AVKRTYHGLGKRSVGVVQF-----DT-TKNRFLAAGDEFMIKFWDMDNV-------NLLASIDADGGLQASPCIRFNKEG 654 (1134)
Q Consensus 588 ~~~~~~~~~~~~~v~~~~~-----~~-~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~v~~v~~sp~~ 654 (1134)
+....+.+|.. .|.+++| ++ ++++|++|+.|++|++||+.+. .+...+. +|...|.+++|+|++
T Consensus 12 ~~~~~l~gH~~-~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~--~h~~~V~~~~~~~~~ 88 (343)
T 2xzm_R 12 VKRGILEGHSD-WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT--GHNHFVSDLALSQEN 88 (343)
T ss_dssp EEEEEEECCSS-CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC--CCSSCEEEEEECSST
T ss_pred eeeeeeccchh-hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc--cCCCceEEEEECCCC
Confidence 45567888887 8999999 66 8999999999999999999754 3344455 457789999999999
Q ss_pred cEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCc
Q 001163 655 ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSR 734 (1134)
Q Consensus 655 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 734 (1134)
.++++++.|++|++||+.++ .....+.
T Consensus 89 ~~l~s~s~D~~v~lwd~~~~-~~~~~~~---------------------------------------------------- 115 (343)
T 2xzm_R 89 CFAISSSWDKTLRLWDLRTG-TTYKRFV---------------------------------------------------- 115 (343)
T ss_dssp TEEEEEETTSEEEEEETTSS-CEEEEEE----------------------------------------------------
T ss_pred CEEEEEcCCCcEEEEECCCC-cEEEEEc----------------------------------------------------
Confidence 99999999999999998765 1111111
Q ss_pred cCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCccc
Q 001163 735 NFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTG 814 (1134)
Q Consensus 735 ~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~ 814 (1134)
T Consensus 116 -------------------------------------------------------------------------------- 115 (343)
T 2xzm_R 116 -------------------------------------------------------------------------------- 115 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEec---CCCCCeEEE
Q 001163 815 KATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFM---PPPPAATFL 890 (1134)
Q Consensus 815 ~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~---~~~~~v~~l 890 (1134)
+|...|.+++|+|++++|++++ |++|++||+.. ....... +|...|.++
T Consensus 116 --------------------------~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~ 168 (343)
T 2xzm_R 116 --------------------------GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCV 168 (343)
T ss_dssp --------------------------CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEE
T ss_pred --------------------------CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeee
Confidence 1556667777777777777776 67777777753 3333322 578889999
Q ss_pred EEcCCCC----------cEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCc
Q 001163 891 AFHPQDN----------NIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE 960 (1134)
Q Consensus 891 ~~sp~~~----------~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~ 960 (1134)
+|+| ++ .++++++.||.|++|| .+++....+.+|...|.+++|+|+|++|++++.|++|++||+....
T Consensus 169 ~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~ 246 (343)
T 2xzm_R 169 RYSP-IMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT 246 (343)
T ss_dssp EECC-CCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred eecc-ccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9999 54 7999999999999999 4567778899999999999999999999999999999999995433
Q ss_pred cccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccce--eec---------cCCCccCEEEEEEc
Q 001163 961 KQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLK--QFV---------PREASGPITHATYS 1029 (1134)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~--~~~---------~~~h~~~v~~~~~s 1029 (1134)
... ..+ ..+ ..+.+++|+|++.+++++.|+.|++||+.+++... .+. ..+|...|.+++|+
T Consensus 247 ~~~-~~~--~~~-----~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 318 (343)
T 2xzm_R 247 YPQ-REF--DAG-----STINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN 318 (343)
T ss_dssp SCS-EEE--ECS-----SCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC
T ss_pred ccc-eee--cCC-----CcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC
Confidence 211 111 111 35899999999999998999999999998877654 222 12678899999999
Q ss_pred cCCCEEEEEecCCcEEEeecCCCc
Q 001163 1030 CDSQSIYVAFEEGSVGVLTASTLR 1053 (1134)
Q Consensus 1030 ~dg~~l~s~s~Dg~i~vwd~~~~~ 1053 (1134)
|||++|++|+.||+|++|++.++.
T Consensus 319 p~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 319 ALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp SSSCCEEEEETTSEEEEEEEEEEE
T ss_pred CCCCeEEEecCCceEEEEEEEccC
Confidence 999999999999999999987653
No 46
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=353.64 Aligned_cols=338 Identities=13% Similarity=0.206 Sum_probs=269.3
Q ss_pred ceEEEEEcCCCC-EEEEE----------eCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEE
Q 001163 600 SVGVVQFDTTKN-RFLAA----------GDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI 668 (1134)
Q Consensus 600 ~v~~~~~~~~~~-~l~~~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~i 668 (1134)
.+.+++|+|++. +++++ +.|+.|++||+.+++....+....+...|.+++|+|++.+|++++.||.|++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v 93 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence 567889999987 89998 8899999999998863322222234678999999999999999999999999
Q ss_pred EEccCC---ceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccc
Q 001163 669 LANADG---IRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIAD 745 (1134)
Q Consensus 669 w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (1134)
|++.+. ......+
T Consensus 94 w~~~~~~~~~~~~~~~---------------------------------------------------------------- 109 (416)
T 2pm9_A 94 YSTNEANNAINSMARF---------------------------------------------------------------- 109 (416)
T ss_dssp ECCSSTTSCCCEEEEC----------------------------------------------------------------
T ss_pred eecccccccccchhhc----------------------------------------------------------------
Confidence 998762 1111111
Q ss_pred ccccccceeeecccCCccceeccccCCccccccEEEEEEecC-CceeeeeccCCeEEeeecCCCCCCcccccccCCCCcc
Q 001163 746 EAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNS-GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQL 824 (1134)
Q Consensus 746 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 824 (1134)
.+|...|.+++|+|+ +.++++++.|+.|++|++..........
T Consensus 110 ---------------------------~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--------- 153 (416)
T 2pm9_A 110 ---------------------------SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY--------- 153 (416)
T ss_dssp ---------------------------CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC---------
T ss_pred ---------------------------cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc---------
Confidence 127788999999998 8999999999999999887432100000
Q ss_pred cCCCCCcccccCCCCCCCCCCeeEEEEcCC-CCeEEEee-CCeEEEEEccCCeEEEEecCC------CCCeEEEEEcCCC
Q 001163 825 WQPPSGILMTNDISDTNPEDAVPCFALSKN-DSYVMSAS-GGKISLFNMMTFKTMTTFMPP------PPAATFLAFHPQD 896 (1134)
Q Consensus 825 ~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d-g~~la~~s-dg~i~lwd~~~~~~~~~~~~~------~~~v~~l~~sp~~ 896 (1134)
......... +|...|.+++|+|+ +.++++++ |+.|++||+.+++.+..+..+ ...|.+++|+|++
T Consensus 154 -----~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (416)
T 2pm9_A 154 -----TPLTPGQSM--SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN 226 (416)
T ss_dssp -----CCBCCCCSC--CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC
T ss_pred -----ccccccccc--CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC
Confidence 000000112 38899999999999 78899988 899999999999999998876 7889999999944
Q ss_pred CcEEEEEeCCC---cEEEEEcccc-eEEEecc-CccCceEEEEEee-CCCEEEEEeCCCcEEEEECCCCccccceeeeec
Q 001163 897 NNIIAIGMEDS---SIQIYNVRVD-EVKTKLK-GHQKRITGLAFSN-TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIP 970 (1134)
Q Consensus 897 ~~~la~g~~dg---~i~iwd~~~~-~~~~~l~-~h~~~V~~l~~s~-d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~ 970 (1134)
..++++++.|+ .|++||+.++ +.+..+. +|...|++++|+| ++++|++++.|+.|++||+.+++ .+...
T Consensus 227 ~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~-----~~~~~ 301 (416)
T 2pm9_A 227 STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE-----QLSQF 301 (416)
T ss_dssp TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC-----EEEEE
T ss_pred CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc-----cceee
Confidence 57999999999 9999999986 6777888 9999999999999 99999999999999999999865 23333
Q ss_pred CCCCCCCCCceEEEEcCCC-CEEEE-EeeceEEEEeCCCcccceeecc--------------------------------
Q 001163 971 NGRTASALADTRVQFHLDQ-THLLA-VHETQIAIYEAPKLECLKQFVP-------------------------------- 1016 (1134)
Q Consensus 971 ~~~~~~~~~v~~l~fs~dg-~~l~~-~~d~~i~iwd~~~~~~~~~~~~-------------------------------- 1016 (1134)
.+|. ..+.+++|+|++ .+|++ +.|+.|++||+.++........
T Consensus 302 ~~~~---~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (416)
T 2pm9_A 302 PARG---NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQA 378 (416)
T ss_dssp ECSS---SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCC
T ss_pred cCCC---CceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccC
Confidence 3443 468999999999 78888 5899999999987765433210
Q ss_pred -CCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCC
Q 001163 1017 -REASGPITHATYSCDSQSIYVAFEEGSVGVLTASTL 1052 (1134)
Q Consensus 1017 -~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~ 1052 (1134)
..|...+.+++|+|||++|++++.|++|+||++.+.
T Consensus 379 ~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 379 PTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 115678889999999999999999999999999874
No 47
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=323.20 Aligned_cols=306 Identities=16% Similarity=0.195 Sum_probs=231.6
Q ss_pred CCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC--ceeEEEecCCCCCCcceEEEcCCCcEEEEEECC
Q 001163 586 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV--NLLASIDADGGLQASPCIRFNKEGILLAVSTND 663 (1134)
Q Consensus 586 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d 663 (1134)
+.+.+..+.+|.. .|.+++|+++ +|++++.|+.|++||+..+ +.+..+...+|...|.+++|+|++++|++++.|
T Consensus 3 ~~~~~~~~~~h~~-~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 3 SINLIKSLKLYKE-KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CCEEEEEEECCSS-CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccccceeeccCCC-ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 4566778888887 8999999987 9999999999999999875 344444332367789999999999999999999
Q ss_pred CcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccc
Q 001163 664 NGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKI 743 (1134)
Q Consensus 664 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1134)
++|++|++...... ..
T Consensus 80 ~~v~iw~~~~~~~~--~~-------------------------------------------------------------- 95 (330)
T 2hes_X 80 STVSIWAKEESADR--TF-------------------------------------------------------------- 95 (330)
T ss_dssp SCEEEEEC---------C--------------------------------------------------------------
T ss_pred CcEEEEEcccCcCc--cc--------------------------------------------------------------
Confidence 99999997532000 00
Q ss_pred ccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCc
Q 001163 744 ADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQ 823 (1134)
Q Consensus 744 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 823 (1134)
... .+..
T Consensus 96 -------------------------------------------~~~---------~~~~--------------------- 102 (330)
T 2hes_X 96 -------------------------------------------EMD---------LLAI--------------------- 102 (330)
T ss_dssp -------------------------------------------CCE---------EEEE---------------------
T ss_pred -------------------------------------------cce---------eEEE---------------------
Confidence 000 0000
Q ss_pred ccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccC----CeEEEEecCCCCCeEEEEEcCCCCc
Q 001163 824 LWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMT----FKTMTTFMPPPPAATFLAFHPQDNN 898 (1134)
Q Consensus 824 ~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~----~~~~~~~~~~~~~v~~l~~sp~~~~ 898 (1134)
+. +|...|.+++|+|+|++|++++ |++|++||+.. .+++..+.+|...|.+++|+| ++.
T Consensus 103 -------------~~--~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~ 166 (330)
T 2hes_X 103 -------------IE--GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEA 166 (330)
T ss_dssp -------------EC------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSS
T ss_pred -------------Ec--CCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCC
Confidence 11 2777888888888888888888 88888888832 356778899999999999999 899
Q ss_pred EEEEEeCCCcEEEEEcccc--eEEEeccCccCceEEEEEeeC--CCEEEEEeCCCcEEEEECCCCcccc---ceeeeecC
Q 001163 899 IIAIGMEDSSIQIYNVRVD--EVKTKLKGHQKRITGLAFSNT--LNVLVSSGADSQLCVWSTDGWEKQA---SKFLTIPN 971 (1134)
Q Consensus 899 ~la~g~~dg~i~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~iwd~~~~~~~~---~~~~~~~~ 971 (1134)
+|++|+.|++|++||..++ +++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+..+.... ........
T Consensus 167 ~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 246 (330)
T 2hes_X 167 LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP 246 (330)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC
T ss_pred EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc
Confidence 9999999999999999876 678899999999999999998 7799999999999999987643211 12222332
Q ss_pred C-CCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCccc--ceeeccCCCcc-CEEEEEEcc--CCCEEEEEecCCcEE
Q 001163 972 G-RTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLEC--LKQFVPREASG-PITHATYSC--DSQSIYVAFEEGSVG 1045 (1134)
Q Consensus 972 ~-~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~--~~~~~~~~h~~-~v~~~~~s~--dg~~l~s~s~Dg~i~ 1045 (1134)
+ |. ..|.+++|++++.++..+.|+.|++||..+++. .... ..+|.. .|.+++|+| |+++|++++.||+|+
T Consensus 247 ~~h~---~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~ 322 (330)
T 2hes_X 247 DVHK---RQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKR-ALCHGVYEINVVKWLELNGKTILATGGDDGIVN 322 (330)
T ss_dssp SCCS---SCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEE-SCTTTTSCEEEEEEC-----CCEEEEETTSEEE
T ss_pred cccc---cceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEecc-ccccccceEEEEEEecCCCceEEEEecCCCcEE
Confidence 2 33 579999999877544447899999999987742 2222 236776 899999999 799999999999999
Q ss_pred EeecCC
Q 001163 1046 VLTAST 1051 (1134)
Q Consensus 1046 vwd~~~ 1051 (1134)
+||+.+
T Consensus 323 ~W~~~~ 328 (330)
T 2hes_X 323 FWSLEK 328 (330)
T ss_dssp EEEC--
T ss_pred EEEecc
Confidence 999864
No 48
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.5e-35 Score=344.39 Aligned_cols=283 Identities=15% Similarity=0.160 Sum_probs=238.2
Q ss_pred CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEe
Q 001163 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 437 (1134)
Q Consensus 358 ~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s 437 (1134)
.+++++|+|+|++ +++|+.||.|++||+.+++.... +..| ..+....|+|++++||+|+
T Consensus 58 ~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~~ 116 (420)
T 3vl1_A 58 AGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILGT 116 (420)
T ss_dssp CCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEEE
T ss_pred cccceeeeecCCe-EEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEEE
Confidence 4558999999996 58999999999999988765431 3344 4555668899999999999
Q ss_pred CCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccc
Q 001163 438 SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH 517 (1134)
Q Consensus 438 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 517 (1134)
.||.|++||+.+++... .+.+|.+.|++++|+|+++ +|++++.|+.|++||+.+++.+..+.+|...|.+++|++
T Consensus 117 ~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 117 TEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp TTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred CCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence 99999999999887554 5678999999999999999 899999999999999999999999999999999999976
Q ss_pred cCCccEEEEecCCCcEEEEecCCCCceeeecCC------------------------CCCeeEEEECcCCCEEEEEecCC
Q 001163 518 KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP------------------------GHSSTMMAYSADGARLFSCGTNK 573 (1134)
Q Consensus 518 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------------------------~~~v~~~~~s~~~~~l~~~~~~~ 573 (1134)
+ +.+|++++.|+.|++||+.+.+....+..+ ...+.+++|+|+++++++++.++
T Consensus 192 ~--~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 269 (420)
T 3vl1_A 192 R--GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG 269 (420)
T ss_dssp T--TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS
T ss_pred C--CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC
Confidence 4 589999999999999999987776666532 23455566789999999998654
Q ss_pred CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCce-eEEEecCCCCCCcceEEEc
Q 001163 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNVNL-LASIDADGGLQASPCIRFN 651 (1134)
Q Consensus 574 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s 651 (1134)
.|++||+.+++....+...+...+.+++|+|++. +|++++.||.|++||+++++. +..+..+ +...+.++.+
T Consensus 270 ----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~- 343 (420)
T 3vl1_A 270 ----VITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN-EGTPINNVYF- 343 (420)
T ss_dssp ----CEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES-TTSCEEEEEE-
T ss_pred ----eEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc-CCCCceEEEe-
Confidence 4999999999988888765555899999999998 999999999999999998754 6666653 2456777755
Q ss_pred CCCcEEEEEECCCcEEEEEccCC
Q 001163 652 KEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 652 p~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
+++.+|++++.||.|++|++...
T Consensus 344 ~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 344 AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp ETTEEEEEETTTEEEEEEEECCT
T ss_pred CCCCEEEEecCCccEEEEeccCC
Confidence 57889999999999999998764
No 49
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-36 Score=349.59 Aligned_cols=357 Identities=10% Similarity=0.120 Sum_probs=266.6
Q ss_pred ccCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEEccC---CceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEE
Q 001163 415 SDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHG---GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK 490 (1134)
Q Consensus 415 ~~h~~~V~~l~~sp-d~~~las~s~dg~v~iwd~~~---~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~ 490 (1134)
.+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +........+ +|...|.+++|+|+++ +|++++.|++|+
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~ 136 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQII 136 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEE
Confidence 78999999999999 999999999999999999987 5433222223 5999999999999998 899999999999
Q ss_pred EEECC---CCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEE--ECcCCCE
Q 001163 491 VWDAV---TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA--YSADGAR 565 (1134)
Q Consensus 491 iwd~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~--~s~~~~~ 565 (1134)
+||+. +++.+..+.+| .+..+.+++.. +...+.++. +++++.+
T Consensus 137 vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 137 VLKVNHYQQESEVKFLNCE--CIRKINLKNFG------------------------------KNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp EEEEEEEEETTEEEEEEEE--EEEEEEGGGGS------------------------------SCCCEEEEEEEECSSCEE
T ss_pred EEEeccccCCceeeccccc--eeEEEEccCcc------------------------------cccCceEEEEEEcCCCCE
Confidence 99994 77777777666 67777765432 112233333 6789999
Q ss_pred EEEEecCCCCCeEEEEEeCCCCeeEEEecC--CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCC
Q 001163 566 LFSCGTNKEGESYLVEWNESEGAVKRTYHG--LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQ 643 (1134)
Q Consensus 566 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 643 (1134)
+++++.++ .|++||+++++.+..+.+ |.. .|.+++|+|++++|++++.||.|++||+++++++..+.. .+..
T Consensus 185 l~~~~~d~----~i~iwd~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~ 258 (437)
T 3gre_A 185 LVALTNLS----RVIIFDIRTLERLQIIENSPRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF-GDHA 258 (437)
T ss_dssp EEEEETTS----EEEEEETTTCCEEEEEECCGGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC-TTCE
T ss_pred EEEEeCCC----eEEEEeCCCCeeeEEEccCCCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec-CCCC
Confidence 99998644 699999999999999988 444 899999999999999999999999999999999888763 2245
Q ss_pred CcceEEEc----CCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCC
Q 001163 644 ASPCIRFN----KEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGER 719 (1134)
Q Consensus 644 ~v~~v~~s----p~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 719 (1134)
.|.+++|+ +++.+|++++.||.|++||+.++ .....+.++...
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~-------------------------------- 305 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG-HCQYAFINSDEQ-------------------------------- 305 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT-EEEEEEESSSSC--------------------------------
T ss_pred ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC-cEEEEEEcCCCC--------------------------------
Confidence 78999665 46889999999999999999887 555555544322
Q ss_pred CcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCe
Q 001163 720 TAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAV 799 (1134)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~ 799 (1134)
+..+.|+|+++.+. +.
T Consensus 306 -----------------------------------------------------------~~~~~~~~~~~~l~----~~- 321 (437)
T 3gre_A 306 -----------------------------------------------------------PSMEHFLPIEKGLE----EL- 321 (437)
T ss_dssp -----------------------------------------------------------CCGGGGSCBCSSGG----GC-
T ss_pred -----------------------------------------------------------Cccceecccccccc----cc-
Confidence 11222333333220 00
Q ss_pred EEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEE
Q 001163 800 HKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMT 878 (1134)
Q Consensus 800 i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~ 878 (1134)
.+.+..|...|.+++|+ ++++|++++ |+.|++||+.+++...
T Consensus 322 ------------------------------------~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~ 364 (437)
T 3gre_A 322 ------------------------------------NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK 364 (437)
T ss_dssp ------------------------------------CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred ------------------------------------eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence 01111277889999999 778899998 9999999999999988
Q ss_pred EecCCC---CCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeC--CCEEEEEeCCCcEEE
Q 001163 879 TFMPPP---PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNT--LNVLVSSGADSQLCV 953 (1134)
Q Consensus 879 ~~~~~~---~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~i 953 (1134)
.+.+|. ..+....+++ ...+++.. |+...+.....+..|.+.|++++|+++ +.+|+|++.||.|+|
T Consensus 365 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~i 435 (437)
T 3gre_A 365 AVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGI 435 (437)
T ss_dssp EEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEE
T ss_pred EEecccccCceEEEEEeec-ceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEE
Confidence 888764 3456666776 55444443 333344455666779999999999998 789999999999999
Q ss_pred EE
Q 001163 954 WS 955 (1134)
Q Consensus 954 wd 955 (1134)
|+
T Consensus 436 w~ 437 (437)
T 3gre_A 436 FQ 437 (437)
T ss_dssp EC
T ss_pred eC
Confidence 95
No 50
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1.8e-33 Score=364.03 Aligned_cols=530 Identities=11% Similarity=0.052 Sum_probs=374.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC------CeEE
Q 001163 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED------RVIK 490 (1134)
Q Consensus 417 h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d------~~i~ 490 (1134)
+...+.+.+||| +.||.++. +.|++|++.+++.. .+.+|...+.+++|||||+ .|++++.+ ..|+
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~ 83 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY 83 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence 456889999995 58888776 68999999987643 4778999999999999999 67766543 4899
Q ss_pred EEECCCCceeEEecCCCcCE-------EEEeccccCCccEEEEecCC------CcEEEEecCCCCceeeecCCCCCeeEE
Q 001163 491 VWDAVTGTKQYIFEGHESPV-------YSICPHHKENIQFIFSTATD------GKIKAWLYDNLGSRVDYDAPGHSSTMM 557 (1134)
Q Consensus 491 iwd~~~~~~~~~~~~h~~~v-------~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~v~~~ 557 (1134)
+||+.+++ ...+..|...+ ..++|+++ |+++++++.+ ..|..|++..+.... +.. .....+
T Consensus 84 ~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpD--g~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~-l~~--~~~~~~ 157 (1045)
T 1k32_A 84 FYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPD--GNLIISTDAMQPFSSMTCLYRVENDGINFVP-LNL--GPATHI 157 (1045)
T ss_dssp EEETTTTE-EEECCCCCEEEETTEECSEEEEECTT--CCEEEEECTTSSSTTCCEEEEEEGGGTEEEE-CCS--CSCSEE
T ss_pred EEECCCCC-eEEcccCCCcccccccccccccCCCC--CEEEEEECCcCCCcccceEEEEECCCCCeEE-ecC--CCccee
Confidence 99988876 67788888888 88998654 4677777754 357777776544322 222 234567
Q ss_pred EECcCCCEEEEEecCCC--------CCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001163 558 AYSADGARLFSCGTNKE--------GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 629 (1134)
Q Consensus 558 ~~s~~~~~l~~~~~~~~--------~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 629 (1134)
+|+| | ++++++.+.+ +.....+|....+.....+.+|.. .+..+.|+++ ..+++++.++.+.+|.+..
T Consensus 158 ~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~-~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~ 233 (1045)
T 1k32_A 158 LFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMST-HVSSPVIVGH-RIYFITDIDGFGQIYSTDL 233 (1045)
T ss_dssp EEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSS-CCEEEEEETT-EEEEEECTTSSCEEEEEET
T ss_pred eeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCC-cccceEEeCC-EEEEEEeccCceEEEEEeC
Confidence 7999 8 7777653211 111234443322233445566665 8899999988 5666777889999998653
Q ss_pred -CceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccccccccccc
Q 001163 630 -VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSA 708 (1134)
Q Consensus 630 -~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1134)
+.....+..+. .+...+|+|+|+.|+.+. ++.|++|++... .+..+..+...
T Consensus 234 ~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~--~l~~l~~~~~~--------------------- 286 (1045)
T 1k32_A 234 DGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE--KIEKIEIGDLE--------------------- 286 (1045)
T ss_dssp TSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEEECTTTC--CEEECCCCCCC---------------------
T ss_pred CCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEEecCCce--EeeeeccCccc---------------------
Confidence 44445554332 456789999999998874 889999998332 22222211000
Q ss_pred ccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEe-cC
Q 001163 709 NANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYT-NS 787 (1134)
Q Consensus 709 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-pd 787 (1134)
.... | ..+...+.+++|+ ||
T Consensus 287 ----------------------------------------~~~~-~------------------~~~~~~v~~~~~S~pd 307 (1045)
T 1k32_A 287 ----------------------------------------SPED-R------------------IISIPSKFAEDFSPLD 307 (1045)
T ss_dssp ----------------------------------------BCCS-E------------------EEECGGGGEEEEEECG
T ss_pred ----------------------------------------cccc-c------------------cccccccceeeecCCC
Confidence 0000 0 0145668899999 99
Q ss_pred CceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCC-CeeEEEEcCCCCeEEEee-CCe
Q 001163 788 GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPED-AVPCFALSKNDSYVMSAS-GGK 865 (1134)
Q Consensus 788 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~-~v~~v~~s~dg~~la~~s-dg~ 865 (1134)
|+.+++++ ++.+.+|++. ++.... +.. |.. .+..++|+ ||+.++.++ ++.
T Consensus 308 G~~la~~~-~~~i~~~~~~----------------------~~~~~~--~~~--~~~~~~~~~~~s-dg~~l~~~s~~~~ 359 (1045)
T 1k32_A 308 GDLIAFVS-RGQAFIQDVS----------------------GTYVLK--VPE--PLRIRYVRRGGD-TKVAFIHGTREGD 359 (1045)
T ss_dssp GGCEEEEE-TTEEEEECTT----------------------SSBEEE--CSC--CSCEEEEEECSS-SEEEEEEEETTEE
T ss_pred CCEEEEEE-cCEEEEEcCC----------------------CCceEE--ccC--CCcceEEeeeEc-CCCeEEEEECCCc
Confidence 99998887 7788888544 232222 222 556 78999999 999999988 567
Q ss_pred EE-EEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEE
Q 001163 866 IS-LFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVS 944 (1134)
Q Consensus 866 i~-lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s 944 (1134)
+. +||+.+++.. .+.++...+..++|+| |+++||+++.++.|++||+.+++....+.+|.+.+.+++|||||++|++
T Consensus 360 l~~~~d~~~~~~~-~l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~ 437 (1045)
T 1k32_A 360 FLGIYDYRTGKAE-KFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAY 437 (1045)
T ss_dssp EEEEEETTTCCEE-ECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEE
T ss_pred eEEEEECCCCCce-EecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEE
Confidence 88 9999877654 4447778999999999 8999999999999999999999988888789999999999999999998
Q ss_pred EeCCC----------cEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCccc---
Q 001163 945 SGADS----------QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLEC--- 1010 (1134)
Q Consensus 945 ~s~Dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~--- 1010 (1134)
++.++ .|++||+.+++ ...+ ..+. ..+..++|+|||++|+.+ .++...+|+......
T Consensus 438 ~~~~~~~~~~~~~~~~i~l~d~~~g~-----~~~l-~~~~---~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~ 508 (1045)
T 1k32_A 438 GFPLKHGETDGYVMQAIHVYDMEGRK-----IFAA-TTEN---SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFE 508 (1045)
T ss_dssp EEEECSSTTCSCCEEEEEEEETTTTE-----EEEC-SCSS---SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECC
T ss_pred EecCccccccCCCCCeEEEEECCCCc-----EEEe-eCCC---cccCCceEcCCCCEEEEEecccCCcCcchhccccccc
Confidence 87654 89999998854 2222 2222 347789999999999884 445555555322111
Q ss_pred --------------------------------------ceeeccCCCccCEEEEEEccCCCEEEE-------------Ee
Q 001163 1011 --------------------------------------LKQFVPREASGPITHATYSCDSQSIYV-------------AF 1039 (1134)
Q Consensus 1011 --------------------------------------~~~~~~~~h~~~v~~~~~s~dg~~l~s-------------~s 1039 (1134)
........|.+.+..++++|||+++++ ..
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~ 588 (1045)
T 1k32_A 509 VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP 588 (1045)
T ss_dssp SCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCC
T ss_pred cCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccC
Confidence 011111245678999999999998875 12
Q ss_pred cCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCC
Q 001163 1040 EEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus 1040 ~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
.+..|.+||+.+++..... ..+.. ++|+| |+++|++++.| .|++||+...+
T Consensus 589 ~~~~l~~~d~~~~~~~~l~-----------~~v~~--~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 589 EKGVLLKYDVKTRKVTEVK-----------NNLTD--LRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CCEEEEEEETTTCCEEEEE-----------EEEEE--EEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred CCceEEEEECCCCcEEEee-----------cCcce--EEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 2457888999888753222 12334 47889 79999998877 79999997665
No 51
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.5e-35 Score=339.08 Aligned_cols=345 Identities=12% Similarity=0.119 Sum_probs=278.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc
Q 001163 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT 498 (1134)
Q Consensus 419 ~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~ 498 (1134)
..+++++|+|++++|++|+.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++||+.+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345679999999999999999999999998876543 34455 4455667899998 89999999999999999999
Q ss_pred eeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeE
Q 001163 499 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY 578 (1134)
Q Consensus 499 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 578 (1134)
....+.+|...|.+++|+++ +.+|++++.|+.|++||+.+.+....+..|...|.+++|+|++++|++++.++ .
T Consensus 131 ~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~----~ 204 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFPS--GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDG----T 204 (420)
T ss_dssp EEEETTSSSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTS----C
T ss_pred eeeecccccCccEEEEECCC--CCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCC----c
Confidence 99999999999999999764 58999999999999999999888888888999999999999999999998754 4
Q ss_pred EEEEeCCCCeeEEEecCCC--CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcE
Q 001163 579 LVEWNESEGAVKRTYHGLG--KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGIL 656 (1134)
Q Consensus 579 i~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 656 (1134)
|++||+++++.+..+..+. ...+.++++.+.+... ... .+...+.+++|+|++++
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------~~~--~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------------------LHE--ISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS---------------------CGG--GCCCCCCTTCSSCTTEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce---------------------eee--cccCcccceEEcCCCCE
Confidence 9999999999999887642 2367777776654221 011 22457889999999999
Q ss_pred EEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccC
Q 001163 657 LAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNF 736 (1134)
Q Consensus 657 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 736 (1134)
|++++.||.|++||+.++.... .+
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~~-~~------------------------------------------------------- 285 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQTI-QL------------------------------------------------------- 285 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEEE-EE-------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCceeE-Ec-------------------------------------------------------
Confidence 9999999999999987651110 00
Q ss_pred cccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCccccc
Q 001163 737 TDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKA 816 (1134)
Q Consensus 737 ~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 816 (1134)
T Consensus 286 -------------------------------------------------------------------------------- 285 (420)
T 3vl1_A 286 -------------------------------------------------------------------------------- 285 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCC-eEEEee-CCeEEEEEccCCeE-EEEecC-CCCCeEEEEE
Q 001163 817 TTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKT-MTTFMP-PPPAATFLAF 892 (1134)
Q Consensus 817 ~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~la~~s-dg~i~lwd~~~~~~-~~~~~~-~~~~v~~l~~ 892 (1134)
.. +|...|.+++|+|+++ +|++++ ||.|++||+.+++. +..+.. |...+.++.+
T Consensus 286 --------------------~~--~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 343 (420)
T 3vl1_A 286 --------------------PS--KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF 343 (420)
T ss_dssp --------------------CC--TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE
T ss_pred --------------------cc--ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe
Confidence 00 1566777888888887 777777 78888888877643 566665 5667888866
Q ss_pred cCCCCcEEEEEeCCCcEEEEEcccc---------eEEEeccCccCceEEEEEeeCCC---EEEEEeCCCcEEEEECCC
Q 001163 893 HPQDNNIIAIGMEDSSIQIYNVRVD---------EVKTKLKGHQKRITGLAFSNTLN---VLVSSGADSQLCVWSTDG 958 (1134)
Q Consensus 893 sp~~~~~la~g~~dg~i~iwd~~~~---------~~~~~l~~h~~~V~~l~~s~d~~---~l~s~s~Dg~i~iwd~~~ 958 (1134)
. ++++|++++.||.|++|++.+. .....+.+|.+.|.+++|+|++. .+++++.+|.+.+|+++.
T Consensus 344 ~--~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 344 A--AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp E--TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred C--CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 5 5789999999999999998763 12234567889999999999999 788888899999999865
No 52
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.1e-34 Score=354.23 Aligned_cols=296 Identities=20% Similarity=0.286 Sum_probs=249.9
Q ss_pred EEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC
Q 001163 351 MTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD 429 (1134)
Q Consensus 351 ~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 429 (1134)
..+. |.+.|++++|+|++..+|++|+.||+|+|||+.++...... ....+.+|...|.+++|+|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~v~~s~~ 441 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGV--------------AQRRLTGHSHFVEDVVLSSD 441 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCE--------------EEEEEECCSSCEEEEEECTT
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccc--------------ccceecCCCCcEEEEEECCC
Confidence 3444 99999999999988768899999999999999875432110 01126789999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe---cCC
Q 001163 430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF---EGH 506 (1134)
Q Consensus 430 ~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---~~h 506 (1134)
+++|++|+.||+|+|||+.++.... .+.+|...|.+++|+|+++ +|+||+.|++|++||.......... .+|
T Consensus 442 g~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h 516 (694)
T 3dm0_A 442 GQFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGH 516 (694)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSC
T ss_pred CCEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCC
Confidence 9999999999999999999987665 6889999999999999999 7999999999999997655433322 468
Q ss_pred CcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC
Q 001163 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 586 (1134)
Q Consensus 507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 586 (1134)
...|.+++|+++.....+++++.|++|++||+........+..|...|.+++|+|++++|++++.|+ .|++||+.+
T Consensus 517 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg----~i~iwd~~~ 592 (694)
T 3dm0_A 517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDG----VVLLWDLAE 592 (694)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS----BCEEEETTT
T ss_pred CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC----eEEEEECCC
Confidence 9999999998876557899999999999999998888888889999999999999999999998754 599999999
Q ss_pred CeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCC-----------------CCCCcceEE
Q 001163 587 GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG-----------------GLQASPCIR 649 (1134)
Q Consensus 587 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------~~~~v~~v~ 649 (1134)
++.+..+..+. .+.+++|+|++.++++++ ++.|++||+.+++.+..+..+. +...+.+++
T Consensus 593 ~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 669 (694)
T 3dm0_A 593 GKKLYSLEANS--VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLN 669 (694)
T ss_dssp TEEEECCBCSS--CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEE
T ss_pred CceEEEecCCC--cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEE
Confidence 99888776543 799999999988777665 5669999999999887765321 111367899
Q ss_pred EcCCCcEEEEEECCCcEEEEEcc
Q 001163 650 FNKEGILLAVSTNDNGIKILANA 672 (1134)
Q Consensus 650 ~sp~~~~l~~~~~dg~i~iw~~~ 672 (1134)
|+|+|++|++|+.||.|++|++.
T Consensus 670 ~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 670 WSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ECTTSSEEEEEETTSEEEEEEC-
T ss_pred EcCCCCEEEEEcCCCeEEEEecc
Confidence 99999999999999999999975
No 53
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-33 Score=324.14 Aligned_cols=243 Identities=20% Similarity=0.316 Sum_probs=206.9
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCC------------------CCEEEEEEecCCCc
Q 001163 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHV------------------GSVNDLAFSYPNKQ 477 (1134)
Q Consensus 416 ~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~------------------~~V~~v~~s~~~~~ 477 (1134)
+|.+.|.+++|||||++||+|+ ++.++||++.+++.+. .+.+|. ..|.+++|+|+|+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 5999999999999999999986 6789999999988655 333332 3499999999999
Q ss_pred eEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEE
Q 001163 478 LSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMM 557 (1134)
Q Consensus 478 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 557 (1134)
+|++|+.|++|++||+.+++.+..+.+|...|.+++|+++ +.+|++++.|++|++||+.+.+....+. +...+.++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~--~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS--GDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCC--CCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 8999999999999999999999999999999999999654 4899999999999999999877666554 34578999
Q ss_pred EECc-CCCEEEEEecCCCCCeEEEEEeCCCCeeEEEe-------cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001163 558 AYSA-DGARLFSCGTNKEGESYLVEWNESEGAVKRTY-------HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 629 (1134)
Q Consensus 558 ~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 629 (1134)
+|+| +++++++++.++ .|++||+.+++.+..+ .+|.. .|.+++|+|++++|++++.||.|++||+.+
T Consensus 213 ~~~~~~~~~l~~~s~d~----~v~iwd~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 213 AVSPGDGKYIAAGSLDR----AVRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp EECSTTCCEEEEEETTS----CEEEEETTTCCEEEEEC------CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEECCCCCEEEEEcCCC----cEEEEECCCCcEEEeecccccCCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 9999 899999998754 4999999999888776 34554 899999999999999999999999999976
Q ss_pred Cc------------eeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 630 VN------------LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 630 ~~------------~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
.. ....+. +|...|.+++|+|++.+|++++.||.|++||..++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~ 342 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYI--GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342 (393)
T ss_dssp -------------CEEEEEE--CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred CCCcccccCCCCCcceEEEe--cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 43 333444 44678999999999999999999999999999877
No 54
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.3e-33 Score=330.59 Aligned_cols=341 Identities=18% Similarity=0.287 Sum_probs=266.6
Q ss_pred cccCCCCE-EEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163 414 SSDYTASV-NRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (1134)
Q Consensus 414 ~~~h~~~V-~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 492 (1134)
+.+|...| .++.| ++++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|++++ .+++|+.|++|++|
T Consensus 117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVW 188 (464)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEEE
T ss_pred EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEEE
Confidence 67888885 55555 67899999999999999999988665 688999999999999887 59999999999999
Q ss_pred ECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecC
Q 001163 493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572 (1134)
Q Consensus 493 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 572 (1134)
|+.+++++..+.+|...|.+++|.+.+++.++++++.|+.|++||+............. ....+.+.|++
T Consensus 189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~--------- 258 (464)
T 3v7d_B 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH-DYPLVFHTPEE--------- 258 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------C-CSSEEESCGGG---------
T ss_pred ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccC-CcceEeeccCC---------
Confidence 99999999999999999999999887888999999999999999998655443222111 11111122211
Q ss_pred CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC
Q 001163 573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (1134)
Q Consensus 573 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 652 (1134)
.......+.+|.. .+.++ +++++++++++.||.|++||+.+++.+..+..| ...|.+++|+|
T Consensus 259 -------------~~~~~~~~~~~~~-~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~ 320 (464)
T 3v7d_B 259 -------------NPYFVGVLRGHMA-SVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH--TDRIYSTIYDH 320 (464)
T ss_dssp -------------CTTEEEEECCCSS-CEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEEET
T ss_pred -------------CeEEEEEccCccc-eEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CCCEEEEEEcC
Confidence 1223445555554 55554 678899999999999999999999999988755 67899999999
Q ss_pred CCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCC
Q 001163 653 EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND 732 (1134)
Q Consensus 653 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 732 (1134)
+++++++++.||.|++||+.++ ..+..+.
T Consensus 321 ~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~-------------------------------------------------- 349 (464)
T 3v7d_B 321 ERKRCISASMDTTIRIWDLENG-ELMYTLQ-------------------------------------------------- 349 (464)
T ss_dssp TTTEEEEEETTSCEEEEETTTT-EEEEEEC--------------------------------------------------
T ss_pred CCCEEEEEeCCCcEEEEECCCC-cEEEEEe--------------------------------------------------
Confidence 9999999999999999998765 2221111
Q ss_pred CccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCc
Q 001163 733 SRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNS 812 (1134)
Q Consensus 733 ~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~ 812 (1134)
T Consensus 350 -------------------------------------------------------------------------------- 349 (464)
T 3v7d_B 350 -------------------------------------------------------------------------------- 349 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEE
Q 001163 813 TGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLA 891 (1134)
Q Consensus 813 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~ 891 (1134)
+|...|.+++++ ++++++++ ||+|++||+.++....... +...+..++
T Consensus 350 ----------------------------~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~ 398 (464)
T 3v7d_B 350 ----------------------------GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITT 398 (464)
T ss_dssp ----------------------------CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEE
T ss_pred ----------------------------CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEE
Confidence 155666677765 46777776 7888888887776665554 566788899
Q ss_pred EcCCCCcEEEEEeCCCcEEEEEcccceEEEe-ccCccCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001163 892 FHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK-LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955 (1134)
Q Consensus 892 ~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd 955 (1134)
|++ +++++++|+ ||.|++||+.+++.+.. +..|.+.|.+++|+ +..++++++.|+.+.+|-
T Consensus 399 ~~~-~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 399 FYV-SDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEE-CSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred EEe-CCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 999 889999998 89999999999999886 77899999999997 445555666777665553
No 55
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.2e-33 Score=315.91 Aligned_cols=299 Identities=17% Similarity=0.231 Sum_probs=239.3
Q ss_pred CCCCeeEEEecCCCCCceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCc-----eeEEEecCCCCCCcceEEEcCCCcEE
Q 001163 584 ESEGAVKRTYHGLGKRSVGVVQFDTT-KNRFLAAGDEFMIKFWDMDNVN-----LLASIDADGGLQASPCIRFNKEGILL 657 (1134)
Q Consensus 584 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~v~~sp~~~~l 657 (1134)
.++.++..++.+|.. .|++++|+|+ +++|++|+.||+|++||+.+.+ +...+. +|...|.+++|+|++++|
T Consensus 25 ~~~~~l~~tL~GH~~-~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~--~h~~~V~~~~~s~dg~~l 101 (340)
T 4aow_A 25 TEQMTLRGTLKGHNG-WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR--GHSHFVSDVVISSDGQFA 101 (340)
T ss_dssp -CEEEEEEEECCCSS-CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC--CCSSCEEEEEECTTSSEE
T ss_pred CCceEEEEEECCccC-CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe--CCCCCEEEEEECCCCCEE
Confidence 344566778999987 9999999998 5899999999999999998654 334444 457789999999999999
Q ss_pred EEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCc
Q 001163 658 AVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFT 737 (1134)
Q Consensus 658 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1134)
++++.|+.|++|+..... ......
T Consensus 102 ~s~~~d~~i~~~~~~~~~-~~~~~~------------------------------------------------------- 125 (340)
T 4aow_A 102 LSGSWDGTLRLWDLTTGT-TTRRFV------------------------------------------------------- 125 (340)
T ss_dssp EEEETTSEEEEEETTTTE-EEEEEE-------------------------------------------------------
T ss_pred EEEcccccceEEeecccc-eeeeec-------------------------------------------------------
Confidence 999999999999976541 110000
Q ss_pred ccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccc
Q 001163 738 DVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKAT 817 (1134)
Q Consensus 738 ~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 817 (1134)
T Consensus 126 -------------------------------------------------------------------------------- 125 (340)
T 4aow_A 126 -------------------------------------------------------------------------------- 125 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEE-EEecCCCCCeEEEEEcCC
Q 001163 818 TNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM-TTFMPPPPAATFLAFHPQ 895 (1134)
Q Consensus 818 ~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~-~~~~~~~~~v~~l~~sp~ 895 (1134)
.+...+..+.+++++.+|++++ |+.+++||....... ....+|...+.+++|+++
T Consensus 126 -----------------------~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 182 (340)
T 4aow_A 126 -----------------------GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 182 (340)
T ss_dssp -----------------------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSC
T ss_pred -----------------------CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccC
Confidence 0233445556666777777776 677777777654433 335678889999999983
Q ss_pred C-CcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCC
Q 001163 896 D-NNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRT 974 (1134)
Q Consensus 896 ~-~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 974 (1134)
. ..++++++.|+.|++||+.+++.+..+.+|.+.|++++|+|++++|++++.|++|++||+.+.+. +.....+
T Consensus 183 ~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~-----~~~~~~~- 256 (340)
T 4aow_A 183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH-----LYTLDGG- 256 (340)
T ss_dssp SSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE-----EEEEECS-
T ss_pred CCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce-----eeeecCC-
Confidence 2 35788999999999999999999999999999999999999999999999999999999998652 2333333
Q ss_pred CCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeec-------cCCCccCEEEEEEccCCCEEEEEecCCcEEEe
Q 001163 975 ASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFV-------PREASGPITHATYSCDSQSIYVAFEEGSVGVL 1047 (1134)
Q Consensus 975 ~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~-------~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vw 1047 (1134)
..+.+++|+|++.+++++.|+.|++||++++..+..+. ..+|...|++++|+|||++|++|+.||+|+||
T Consensus 257 ---~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW 333 (340)
T 4aow_A 257 ---DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333 (340)
T ss_dssp ---SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ---ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 35899999999999888999999999999887665543 23688999999999999999999999999999
Q ss_pred ecCCCc
Q 001163 1048 TASTLR 1053 (1134)
Q Consensus 1048 d~~~~~ 1053 (1134)
|+.+|+
T Consensus 334 ~~~tGt 339 (340)
T 4aow_A 334 QVTIGT 339 (340)
T ss_dssp EEEC--
T ss_pred eCCCcC
Confidence 999985
No 56
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.5e-33 Score=325.07 Aligned_cols=321 Identities=16% Similarity=0.267 Sum_probs=274.1
Q ss_pred ecCCCe-eEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCE
Q 001163 354 NQGSAV-KSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (1134)
Q Consensus 354 ~h~~~V-~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 432 (1134)
+|.+.| ++ ++++|+ ++++|+.||+|++||+.+++.+.. +.+|.+.|.+++|+ +++
T Consensus 116 ~h~~~v~~~--~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~--~~~ 171 (445)
T 2ovr_B 116 GHDDHVITC--LQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR--DNI 171 (445)
T ss_dssp CSTTSCEEE--EEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE--TTE
T ss_pred ccCCCcEEE--EEEcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec--CCE
Confidence 377664 55 455677 568999999999999999887653 67899999999997 679
Q ss_pred EEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEE
Q 001163 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 512 (1134)
Q Consensus 433 las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 512 (1134)
|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|++|++||+.+++.+..+.+|...|.+
T Consensus 172 l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 244 (445)
T 2ovr_B 172 IISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 244 (445)
T ss_dssp EEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEE
T ss_pred EEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEE
Confidence 9999999999999999988665 678999999999996 45 6999999999999999999999999999999999
Q ss_pred EeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEE
Q 001163 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT 592 (1134)
Q Consensus 513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 592 (1134)
+++ ++.++++++.||.|++||+.+......+..+...|.++.| ++.++++++.++ .|++||+.+++.+..
T Consensus 245 ~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~----~i~i~d~~~~~~~~~ 314 (445)
T 2ovr_B 245 VQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDT----SIRVWDVETGNCIHT 314 (445)
T ss_dssp EEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTS----CEEEEETTTCCEEEE
T ss_pred EEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCC----eEEEEECCCCCEEEE
Confidence 987 3478999999999999999988888888888889999999 889999998754 499999999999999
Q ss_pred ecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC-CCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163 593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD-GGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (1134)
Q Consensus 593 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 671 (1134)
+.+|.. .+.++.+ +++++++++.||.|++||+.+++.+..+..+ .+...|.+++|+ ++++++++.||.|++|++
T Consensus 315 ~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 315 LTGHQS-LTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp ECCCCS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred EcCCcc-cEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 998876 6776666 5679999999999999999999999988753 256789999996 679999999999999999
Q ss_pred cCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccccccc
Q 001163 672 ADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS 751 (1134)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 751 (1134)
.++ ..+..+...
T Consensus 390 ~~~-~~~~~~~~~------------------------------------------------------------------- 401 (445)
T 2ovr_B 390 KTG-EFIRNLVTL------------------------------------------------------------------- 401 (445)
T ss_dssp TTC-CEEEEEEEC-------------------------------------------------------------------
T ss_pred CCC-ceeeeeecc-------------------------------------------------------------------
Confidence 887 333333110
Q ss_pred ceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCe----EEeeecCC
Q 001163 752 RIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAV----HKLWKWPR 807 (1134)
Q Consensus 752 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~----i~vw~~~~ 807 (1134)
....+...|.+++|+|++..+++++.||. +.|||+..
T Consensus 402 -------------------~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 402 -------------------ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp -------------------TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred -------------------ccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 00126788999999999999999999997 99998764
No 57
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=347.96 Aligned_cols=268 Identities=9% Similarity=0.050 Sum_probs=199.4
Q ss_pred cCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC------CCEEEEEeC
Q 001163 365 HPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD------GTLFGVAYS 438 (1134)
Q Consensus 365 sp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd------~~~las~s~ 438 (1134)
+|+++ ++|+|+.|++|+|||+.+++..... ...+.+|.+.|.+++|+|+ +.+||+|+.
T Consensus 170 ~~~~~-~laS~s~D~tI~iWd~~~~~~~~~~---------------~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~ 233 (524)
T 2j04_B 170 NEHLE-MFDKEKHSSCIQIFKMNTSTLHCVK---------------VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQ 233 (524)
T ss_dssp -------------CEEEEEEEEETTTCCEEE---------------EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEET
T ss_pred chhhh-hhccCCCCceEEEEEccCCCCCceE---------------EEEEEecCCcEEEEEECCCCCCCCCCceEEEEec
Confidence 44554 3466778999999999877642210 0014568899999999997 579999999
Q ss_pred CCEEEEEEccCCcee--------eeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc-eeEEecCCCcC
Q 001163 439 KHIVHLYTYHGGDEL--------RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-KQYIFEGHESP 509 (1134)
Q Consensus 439 dg~v~iwd~~~~~~~--------~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~~~ 509 (1134)
||+|+|||+.++... .....+.+|...|++++|++++ .|++|+.||+|++||+.++. +...+.+|...
T Consensus 234 DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~ 310 (524)
T 2j04_B 234 EGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSY 310 (524)
T ss_dssp TSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSSC
T ss_pred CCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC---eEEEEeCCCEEEEEECCCCCCceEEeeccccc
Confidence 999999999876422 1123578899999999999864 59999999999999999774 45678999999
Q ss_pred EEEEeccccCCc-cEEEEecCCCcEEEEecCCCCceeeecCCC--CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC
Q 001163 510 VYSICPHHKENI-QFIFSTATDGKIKAWLYDNLGSRVDYDAPG--HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 586 (1134)
Q Consensus 510 v~~~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 586 (1134)
|.++++...+++ .+|++++.|++|++||+++......+..+. ..|.+++|+|+++.+++++.+ ..|++||+++
T Consensus 311 V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d----~tv~lwd~~~ 386 (524)
T 2j04_B 311 ILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGA----SSLRAVPSRA 386 (524)
T ss_dssp EEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSS----SEEEEEETTC
T ss_pred EEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCC----CcEEEEECcc
Confidence 999954335555 799999999999999998766555444433 357899999999999988653 3699999999
Q ss_pred CeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC---CCCCCcceEEEcCCCcEE
Q 001163 587 GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD---GGLQASPCIRFNKEGILL 657 (1134)
Q Consensus 587 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~v~~sp~~~~l 657 (1134)
+.++..+.+|.. .|.+++|+|+++.|++|+.||+|++||...+ .+...... .....+.+++|+|++..+
T Consensus 387 ~~~~~~l~gH~~-~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 387 AFAVHPLVSRET-TITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp TTCCEEEEECSS-CEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEE
T ss_pred cccceeeecCCC-ceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeE
Confidence 998888888876 9999999999999999999999999998654 22211100 011135678888888743
No 58
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=6.6e-34 Score=325.90 Aligned_cols=295 Identities=13% Similarity=0.171 Sum_probs=243.0
Q ss_pred eeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEE
Q 001163 348 TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (1134)
Q Consensus 348 ~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 426 (1134)
.....+. |...|++++|+|+|..++++|+.||.|+|||+.+++..... ...+|...|.+++|
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----------------~~~~h~~~v~~~~~ 126 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI-----------------QGMGPGDAITGMKF 126 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE-----------------CCCSTTCBEEEEEE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee-----------------ecCCcCCceeEEEe
Confidence 3344544 89999999999999447899999999999999988765421 13479999999999
Q ss_pred cC-CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecC
Q 001163 427 SP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 505 (1134)
Q Consensus 427 sp-d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 505 (1134)
+| ++++|++++.|+.|++||+.+. .+.......+|...|.+++|+|+++ +|++++.|+.|++||+ +++.+..+.+
T Consensus 127 ~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~~~ 202 (383)
T 3ei3_B 127 NQFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKEKL 202 (383)
T ss_dssp ETTEEEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEEEC
T ss_pred CCCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEecc
Confidence 99 7899999999999999999963 3443333445668999999999999 8999999999999998 6889999999
Q ss_pred CCcCEEEEeccccCCcc-EEEEecCCCcEEEEecCCC----CceeeecCCCCCeeEEEECc-CCCEEEEEecCCCCCeEE
Q 001163 506 HESPVYSICPHHKENIQ-FIFSTATDGKIKAWLYDNL----GSRVDYDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYL 579 (1134)
Q Consensus 506 h~~~v~~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i 579 (1134)
|...|.+++|+++. . ++++++.|+.|++||+... .....+ .+...|.+++|+| ++++|++++.+ +.|
T Consensus 203 h~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d----~~i 275 (383)
T 3ei3_B 203 HKAKVTHAEFNPRC--DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQR----NEI 275 (383)
T ss_dssp SSSCEEEEEECSSC--TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESS----SEE
T ss_pred CCCcEEEEEECCCC--CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCC----CcE
Confidence 99999999997654 5 8999999999999999873 333333 5778999999999 99999999764 469
Q ss_pred EEEeCCCCeeEEEecCCCC----------------CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCC
Q 001163 580 VEWNESEGAVKRTYHGLGK----------------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQ 643 (1134)
Q Consensus 580 ~~wd~~~~~~~~~~~~~~~----------------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 643 (1134)
++||+.+++....+.++.. ..+..++|+|++.+ +++.||.|++||+.+++.+..+..+.+..
T Consensus 276 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~ 353 (383)
T 3ei3_B 276 RVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAG 353 (383)
T ss_dssp EEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCS
T ss_pred EEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCc
Confidence 9999999877666654431 13334566666655 66789999999999999999998765566
Q ss_pred CcceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163 644 ASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (1134)
Q Consensus 644 ~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 673 (1134)
.+.+++|+|++++|++++ ||.|++|++++
T Consensus 354 ~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 354 IISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred eEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 788889999999999997 89999999864
No 59
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-35 Score=341.87 Aligned_cols=350 Identities=7% Similarity=0.012 Sum_probs=247.5
Q ss_pred CCCCEEEEEEcCCC---------CEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCC
Q 001163 417 YTASVNRVMWSPDG---------TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR 487 (1134)
Q Consensus 417 h~~~V~~l~~spd~---------~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~ 487 (1134)
+.+.|.+|+|+|++ ++||+|+.++.. ...+|+++ .+++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 57899999999987 799999876420 01368888 789999999
Q ss_pred eEEEEECCCCcee----EEecCCCcCEEEEecccc----CCccEEEEecCCCcEEEEecCCCCce-----------eeec
Q 001163 488 VIKVWDAVTGTKQ----YIFEGHESPVYSICPHHK----ENIQFIFSTATDGKIKAWLYDNLGSR-----------VDYD 548 (1134)
Q Consensus 488 ~i~iwd~~~~~~~----~~~~~h~~~v~~~~~~~~----~~~~~l~s~s~dg~i~vwd~~~~~~~-----------~~~~ 548 (1134)
+|+|||+.+++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+...... ..+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 9999999887653 456778899999999886 34679999999999999999765321 2456
Q ss_pred CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe-eEEEecCCCCCceEEE--EEcCCC-CEEEEEeCCCeEEE
Q 001163 549 APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA-VKRTYHGLGKRSVGVV--QFDTTK-NRFLAAGDEFMIKF 624 (1134)
Q Consensus 549 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~i 624 (1134)
.+...|.+++|++++ .|++++.| +.|++||++++. +...+.+|.. .|.++ +|++++ .+|++++.|++|++
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~D----gtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFKN----GFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEETT----SEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeCC----CEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 677899999999865 78888764 469999999774 4556788876 89998 578887 89999999999999
Q ss_pred EEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccccccc
Q 001163 625 WDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGT 704 (1134)
Q Consensus 625 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1134)
||+++++.+..+..+.....|.+++|+|++..+++++.|++|++||+.++. ....+.
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~-~~~~l~---------------------- 394 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF-AVHPLV---------------------- 394 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT-CCEEEE----------------------
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc-cceeee----------------------
Confidence 999998877776654332357899999999999999999999999987652 111111
Q ss_pred ccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEE
Q 001163 705 FGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIY 784 (1134)
Q Consensus 705 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 784 (1134)
+|...|.+++|
T Consensus 395 ---------------------------------------------------------------------gH~~~V~sva~ 405 (524)
T 2j04_B 395 ---------------------------------------------------------------------SRETTITAIGV 405 (524)
T ss_dssp ---------------------------------------------------------------------ECSSCEEEEEC
T ss_pred ---------------------------------------------------------------------cCCCceEEEEe
Confidence 27788999999
Q ss_pred ecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCC
Q 001163 785 TNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGG 864 (1134)
Q Consensus 785 spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg 864 (1134)
+|+|+.|++++.||.+++|++.... +....+ .....+...+..++|+|+|+.+.. ++
T Consensus 406 Sp~g~~l~Sgs~Dgtv~lwd~~~~~---------------~~~~~~------~~~~~~~~~v~~v~~sp~g~~~~~--~~ 462 (524)
T 2j04_B 406 SRLHPMVLAGSADGSLIITNAARRL---------------LHGIKN------SSATQKSLRLWKWDYSIKDDKYRI--DS 462 (524)
T ss_dssp CSSCCBCEEEETTTEEECCBSCSST---------------TTCC------------CCCCEEEECBCCSSSCEEEE--CC
T ss_pred CCCCCeEEEEECCCEEEEEechHhh---------------cccccc------CccceeeeEEEEeccCCCCCeEEc--cC
Confidence 9999999999999999999764311 000000 000002235778999999986533 22
Q ss_pred eEEEEEcc-CCeEEEEecCCCCCeEEEEEcCCC---CcEEEEEeCCCcEEEEEccc
Q 001163 865 KISLFNMM-TFKTMTTFMPPPPAATFLAFHPQD---NNIIAIGMEDSSIQIYNVRV 916 (1134)
Q Consensus 865 ~i~lwd~~-~~~~~~~~~~~~~~v~~l~~sp~~---~~~la~g~~dg~i~iwd~~~ 916 (1134)
.+.+|+.. ++.++..+.+|...|.+++|+| + +.++|+|+.||.|+||++..
T Consensus 463 ~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 463 SYEVYPLTVNDVSKAKIDAHGINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCCCC-------------CCCSCCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred CceecccccCCcceeeecCCCceEEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 33344432 5678888999999999999999 6 45999999999999999863
No 60
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=8.1e-33 Score=325.92 Aligned_cols=347 Identities=15% Similarity=0.220 Sum_probs=271.6
Q ss_pred eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEE
Q 001163 588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK 667 (1134)
Q Consensus 588 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~ 667 (1134)
.....+.+|....+.++.+ +++++++|+.||.|++||+.+++.+..+..| ...|.+++|+|++ ++++++.||+|+
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h--~~~V~~l~~~~~~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGH--DGGVWALKYAHGG-ILVSGSTDRTVR 186 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECSTT-EEEEEETTSCEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCC--CcCEEEEEEcCCC-EEEEEeCCCCEE
Confidence 3456788888755666665 5679999999999999999999999988855 7799999999988 999999999999
Q ss_pred EEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccc
Q 001163 668 ILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEA 747 (1134)
Q Consensus 668 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (1134)
+||+.++ .....+.
T Consensus 187 vwd~~~~-~~~~~~~----------------------------------------------------------------- 200 (464)
T 3v7d_B 187 VWDIKKG-CCTHVFE----------------------------------------------------------------- 200 (464)
T ss_dssp EEETTTT-EEEEEEC-----------------------------------------------------------------
T ss_pred EEECCCC-cEEEEEC-----------------------------------------------------------------
Confidence 9999877 3333332
Q ss_pred ccccceeeecccCCccceeccccCCccccccEEEEEEe--cCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCccc
Q 001163 748 VEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYT--NSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLW 825 (1134)
Q Consensus 748 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s--pdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 825 (1134)
+|...|.+++|+ +++..+++++.||.+++|++...................+
T Consensus 201 --------------------------~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 254 (464)
T 3v7d_B 201 --------------------------GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254 (464)
T ss_dssp --------------------------CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred --------------------------CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence 266788899988 5789999999999999999886532211110000000011
Q ss_pred CCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEe
Q 001163 826 QPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGM 904 (1134)
Q Consensus 826 d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~ 904 (1134)
...........+.+ |...+.++ +++++++++++ |+.|++||+.+++++..+.+|...|.+++|+| +++++++|+
T Consensus 255 ~~~~~~~~~~~~~~--~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~ 329 (464)
T 3v7d_B 255 TPEENPYFVGVLRG--HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISAS 329 (464)
T ss_dssp CGGGCTTEEEEECC--CSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEE
T ss_pred ccCCCeEEEEEccC--ccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEe
Confidence 11111111112333 77777776 67899999998 99999999999999999999999999999999 899999999
Q ss_pred CCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEE
Q 001163 905 EDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQ 984 (1134)
Q Consensus 905 ~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 984 (1134)
.||.|++||+.+++.+..+.+|...|.+++|+ +.+|++++.||+|++||+.+++. ....... ..+..++
T Consensus 330 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~----~~~~~~~-----~~~~~~~ 398 (464)
T 3v7d_B 330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR----KFSYHHT-----NLSAITT 398 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE----EEEEECT-----TCCCEEE
T ss_pred CCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCce----eeeecCC-----CCccEEE
Confidence 99999999999999999999999999999997 68999999999999999988552 2222221 3477899
Q ss_pred EcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeec
Q 001163 985 FHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTA 1049 (1134)
Q Consensus 985 fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~ 1049 (1134)
|++++++++++.|+.|++||+.+++.+..... .|...|.+++|+ ++.++++++.||.+.+|-+
T Consensus 399 ~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~-~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 399 FYVSDNILVSGSENQFNIYNLRSGKLVHANIL-KDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EEECSSEEEEEETTEEEEEETTTCCEEESCTT-TTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred EEeCCCEEEEecCCeEEEEECCCCcEEehhhc-cCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 99999999998899999999999999876442 678999999997 4455666677776665543
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.1e-32 Score=322.59 Aligned_cols=317 Identities=21% Similarity=0.344 Sum_probs=269.2
Q ss_pred eeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEe
Q 001163 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWL 537 (1134)
Q Consensus 458 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd 537 (1134)
.+.+|.+.|.. +++++++ +|++|+.||+|++||+.+++.+..+.+|...|.+++++ +.++++++.||+|++||
T Consensus 113 ~l~~h~~~v~~-~~~~~g~--~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR----DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp EEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE----TTEEEEEETTSCEEEEE
T ss_pred EecccCCCcEE-EEEEcCC--EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec----CCEEEEEeCCCeEEEEE
Confidence 57899987533 3455677 89999999999999999999999999999999999985 26899999999999999
Q ss_pred cCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe
Q 001163 538 YDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG 617 (1134)
Q Consensus 538 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 617 (1134)
+.+++....+..+...|.++.++ ++.+++++.+ +.|++||+.+++.+..+.+|.. .+.++++ +++++++++
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~d----g~i~~wd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~ 256 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRD----ATLRVWDIETGQCLHVLMGHVA-AVRCVQY--DGRRVVSGA 256 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETT----SEEEEEESSSCCEEEEEECCSS-CEEEEEE--CSSCEEEEE
T ss_pred CCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCC----CEEEEEECCCCcEEEEEcCCcc-cEEEEEE--CCCEEEEEc
Confidence 99888888888888899999885 5678888764 4699999999999999988876 8888888 678999999
Q ss_pred CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhh
Q 001163 618 DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIV 697 (1134)
Q Consensus 618 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1134)
.||.|++||+.+++.+..+..+ ...|.++.| ++.++++++.||.|++||+.++ .....+.
T Consensus 257 ~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~--------------- 316 (445)
T 2ovr_B 257 YDFMVKVWDPETETCLHTLQGH--TNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-NCIHTLT--------------- 316 (445)
T ss_dssp TTSCEEEEEGGGTEEEEEECCC--SSCEEEEEE--CSSEEEEEETTSCEEEEETTTC-CEEEEEC---------------
T ss_pred CCCEEEEEECCCCcEeEEecCC--CCceEEEEE--CCCEEEEEeCCCeEEEEECCCC-CEEEEEc---------------
Confidence 9999999999999988888754 667888888 7889999999999999998765 1111110
Q ss_pred cccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccc
Q 001163 698 KAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAM 777 (1134)
Q Consensus 698 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 777 (1134)
T Consensus 317 -------------------------------------------------------------------------------- 316 (445)
T 2ovr_B 317 -------------------------------------------------------------------------------- 316 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCe
Q 001163 778 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY 857 (1134)
Q Consensus 778 ~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~ 857 (1134)
+|...+.++.+ ++++
T Consensus 317 ---------------------------------------------------------------~~~~~v~~~~~--~~~~ 331 (445)
T 2ovr_B 317 ---------------------------------------------------------------GHQSLTSGMEL--KDNI 331 (445)
T ss_dssp ---------------------------------------------------------------CCCSCEEEEEE--ETTE
T ss_pred ---------------------------------------------------------------CCcccEEEEEE--eCCE
Confidence 14445555555 4568
Q ss_pred EEEee-CCeEEEEEccCCeEEEEecC---CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEec-----cCccC
Q 001163 858 VMSAS-GGKISLFNMMTFKTMTTFMP---PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL-----KGHQK 928 (1134)
Q Consensus 858 la~~s-dg~i~lwd~~~~~~~~~~~~---~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l-----~~h~~ 928 (1134)
+++++ ||.|++||+.+++.+..+.. |...|++++|++ .+|++|+.||.|++||+.+++.+..+ .+|.+
T Consensus 332 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 408 (445)
T 2ovr_B 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG 408 (445)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCc
Confidence 88887 89999999999999999886 778899999964 69999999999999999999988877 57889
Q ss_pred ceEEEEEeeCCCEEEEEeCCCc----EEEEECCC
Q 001163 929 RITGLAFSNTLNVLVSSGADSQ----LCVWSTDG 958 (1134)
Q Consensus 929 ~V~~l~~s~d~~~l~s~s~Dg~----i~iwd~~~ 958 (1134)
.|++++|+|++.++++++.||+ |.+||+..
T Consensus 409 ~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 409 VVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred eEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 9999999999999999999998 99999876
No 62
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=313.75 Aligned_cols=289 Identities=12% Similarity=0.119 Sum_probs=253.8
Q ss_pred EEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC
Q 001163 350 VMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD 429 (1134)
Q Consensus 350 ~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 429 (1134)
....+|...|++++|+|+|+ ++++|+.||.|+|||+.+++.+.. +.+|...|.+++|+|+
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~~~ 85 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVDCF 85 (369)
T ss_dssp EEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTT
T ss_pred EEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEcCC
Confidence 33445999999999999999 568999999999999999877653 6789999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC-----CeEEEEECCCCc------
Q 001163 430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RVIKVWDAVTGT------ 498 (1134)
Q Consensus 430 ~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d-----~~i~iwd~~~~~------ 498 (1134)
+++|++++.||.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++||+.++.
T Consensus 86 ~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 159 (369)
T 3zwl_B 86 TKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELT 159 (369)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceeec
Confidence 9999999999999999999988665 344 889999999999999 79999998 999999987664
Q ss_pred -----eeEEecCCCc--CEEEEeccccCCccEEEEecCCCcEEEEecCC-CCceeeecCCCCCeeEEEECcCCCEEEEEe
Q 001163 499 -----KQYIFEGHES--PVYSICPHHKENIQFIFSTATDGKIKAWLYDN-LGSRVDYDAPGHSSTMMAYSADGARLFSCG 570 (1134)
Q Consensus 499 -----~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 570 (1134)
.+..+..|.. .+.+++|+++ +.+|++++.||.|++||+.. ......+..+...|.+++|+|++++|++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 237 (369)
T 3zwl_B 160 KVSEEPIHKIITHEGLDAATVAGWSTK--GKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS 237 (369)
T ss_dssp EECSSCSEEEECCTTCCCEEEEEECGG--GCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ccccceeeeccCCcCccceeEEEEcCC--CCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec
Confidence 3445556666 8999998764 48999999999999999998 566667777888999999999999999997
Q ss_pred cCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCC--------------eEEEEEcCCCceeEEE
Q 001163 571 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF--------------MIKFWDMDNVNLLASI 636 (1134)
Q Consensus 571 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~ 636 (1134)
.++ .|++||+.+++.+..+... ..+..++|+|++.++++++.++ .+++||..+++.+..+
T Consensus 238 ~d~----~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 311 (369)
T 3zwl_B 238 RDT----NSFLVDVSTLQVLKKYETD--CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV 311 (369)
T ss_dssp TTS----EEEEEETTTCCEEEEEECS--SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE
T ss_pred CCc----eEEEEECCCCceeeeecCC--CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe
Confidence 644 6999999999999888733 3799999999999999999888 8999999999999998
Q ss_pred ecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 637 DADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 637 ~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
..| ...|.+++|+|++++|++++.||.|++|++..+
T Consensus 312 ~~~--~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 312 QGH--FGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp ECC--SSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred ecc--cCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 865 668999999999999999999999999999765
No 63
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.1e-33 Score=322.17 Aligned_cols=299 Identities=13% Similarity=0.128 Sum_probs=251.5
Q ss_pred EEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163 350 VMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 428 (1134)
Q Consensus 350 ~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 428 (1134)
...+. |.+.|++++|+| + ++++|+.||.|+|||+.+++...... ....+.+|...|.+++|+|
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~h~~~v~~~~~~~ 72 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKD-------------KSYSHFVHKSGLHHVDVLQ 72 (397)
T ss_dssp EEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGG-------------GEEEEECCTTCEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCC-------------cceEEecCCCcEEEEEEec
Confidence 33443 999999999999 4 67999999999999999887211000 0012568999999999999
Q ss_pred C----C---CEEEEEeCCCEEEEEEccCCce-----eeeeeeeecC-----CCCEEEEEEe----cCCCceE-EEEEeCC
Q 001163 429 D----G---TLFGVAYSKHIVHLYTYHGGDE-----LRNHLEIEAH-----VGSVNDLAFS----YPNKQLS-VVTCGED 486 (1134)
Q Consensus 429 d----~---~~las~s~dg~v~iwd~~~~~~-----~~~~~~l~~h-----~~~V~~v~~s----~~~~~~~-l~s~s~d 486 (1134)
+ + ++|++++.||.|++||+.+++. +. .+.+| ...|.+++|+ |+++ + |++++.|
T Consensus 73 ~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~d 147 (397)
T 1sq9_A 73 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVK 147 (397)
T ss_dssp EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETT
T ss_pred ccccCCccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCC
Confidence 9 9 9999999999999999998875 43 56778 5999999999 9998 7 9999999
Q ss_pred CeEEEEECCC------CceeE-----Ee-------cCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec
Q 001163 487 RVIKVWDAVT------GTKQY-----IF-------EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD 548 (1134)
Q Consensus 487 ~~i~iwd~~~------~~~~~-----~~-------~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 548 (1134)
+.|++||+.+ ++.+. .+ ..|...|.+++|++ ++ ++++++.|+.|++||++.......+.
T Consensus 148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~ 224 (397)
T 1sq9_A 148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFE 224 (397)
T ss_dssp SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEEe
Confidence 9999999998 77766 77 44899999999865 55 99999999999999999888877787
Q ss_pred C---C---CCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecC-------------CCCCceEEEEEcCC
Q 001163 549 A---P---GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG-------------LGKRSVGVVQFDTT 609 (1134)
Q Consensus 549 ~---~---~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~-------------~~~~~v~~~~~~~~ 609 (1134)
. + ...+.+++|+|++++|++++.++ ..+.|++||+.+++.+..+.+ |.. .+.+++|+|+
T Consensus 225 ~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~-~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~ 302 (397)
T 1sq9_A 225 SQHSMINNSNSIRSVKFSPQGSLLAIAHDSN-SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLSFNDS 302 (397)
T ss_dssp CCC---CCCCCEEEEEECSSTTEEEEEEEET-TEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEEECSS
T ss_pred ccccccccCCccceEEECCCCCEEEEEecCC-CCceEEEEECCCCcccceeccCcccccccccccccCC-cEEEEEECCC
Confidence 7 7 88999999999999999997641 115799999999999999988 665 8999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCceeEEEe------cC-------------CCCCCcceEEEcCCC----------cEEEEE
Q 001163 610 KNRFLAAGDEFMIKFWDMDNVNLLASID------AD-------------GGLQASPCIRFNKEG----------ILLAVS 660 (1134)
Q Consensus 610 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~sp~~----------~~l~~~ 660 (1134)
+++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++ ++|+++
T Consensus 303 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~ 382 (397)
T 1sq9_A 303 GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCV 382 (397)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEe
Confidence 9999999999999999999999999988 33 115689999999998 799999
Q ss_pred ECCCcEEEEEccCC
Q 001163 661 TNDNGIKILANADG 674 (1134)
Q Consensus 661 ~~dg~i~iw~~~~~ 674 (1134)
+.||.|++|++.++
T Consensus 383 ~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 383 CLDRSIRWFREAGG 396 (397)
T ss_dssp ETTTEEEEEEEEC-
T ss_pred cCCCcEEEEEcCCC
Confidence 99999999999875
No 64
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=7.5e-34 Score=330.70 Aligned_cols=294 Identities=17% Similarity=0.230 Sum_probs=236.2
Q ss_pred eecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC-CCC
Q 001163 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGT 431 (1134)
Q Consensus 353 ~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~ 431 (1134)
-.|...|+||+|+|.+..+||+|+.||+|+|||+.+++..... .+.+|.+.|++|+|+| +++
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~-----------------~~~gH~~~V~~l~f~p~~~~ 178 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI-----------------KGIGAGGSITGLKFNPLNTN 178 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-----------------CCCSSSCCCCEEEECSSCTT
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-----------------EccCCCCCEEEEEEeCCCCC
Confidence 3488999999999976668899999999999999887643321 1568999999999998 789
Q ss_pred EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEE
Q 001163 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 511 (1134)
Q Consensus 432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~ 511 (1134)
+|++|+.||+|+|||++++. .........+...+.+++|+|+++ +|++|+.||.|++||+. ++.+..+.+|...|.
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~ 254 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMHKKKVT 254 (435)
T ss_dssp EEEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCCSSCEE
T ss_pred EEEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecccceEE
Confidence 99999999999999998764 332222334556789999999999 89999999999999975 567788999999999
Q ss_pred EEeccccCCccEEEEecCCCcEEEEecCCCCceee---ecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe
Q 001163 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD---YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 588 (1134)
Q Consensus 512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 588 (1134)
+++|++..+ .++++++.|+.|++||++....... ...|...|.+++|+|+|++|++++.|+ .|++||+.++.
T Consensus 255 ~v~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~----~i~iwd~~~~~ 329 (435)
T 4e54_B 255 HVALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS----EIRVYSASQWD 329 (435)
T ss_dssp EEEECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS----CEEEEESSSSS
T ss_pred eeeecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCC----EEEEEECCCCc
Confidence 999987543 5889999999999999987665433 245677999999999999999998754 49999999998
Q ss_pred eEEEecCCCCC-----ceEEEEEcCCCCEEEEEe------------CCCeEEEEEcCCCceeEEEecCCCCCCcceE-EE
Q 001163 589 VKRTYHGLGKR-----SVGVVQFDTTKNRFLAAG------------DEFMIKFWDMDNVNLLASIDADGGLQASPCI-RF 650 (1134)
Q Consensus 589 ~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~ 650 (1134)
....+..|... .+....|+|++..+++++ .++.|++||..+++.+..+.. ++...|.++ +|
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~-~~~~~v~s~~~f 408 (435)
T 4e54_B 330 CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD-PESSGISSLNEF 408 (435)
T ss_dssp SEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC-SSCCCCCCEEEE
T ss_pred cceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC-CCCCcEEEEEEE
Confidence 88777665431 223456777777776664 346799999999999888754 235567776 69
Q ss_pred cCCCcEEEEEECCCcEEEEEccCC
Q 001163 651 NKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 651 sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
+|+|.+|++|+ |+.|+||++.++
T Consensus 409 spdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 409 NPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp CTTSSCEEEEC-SSEEEECCCC--
T ss_pred CCCCCEEEEEc-CCcEEEEECCcC
Confidence 99999999876 789999999877
No 65
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.4e-33 Score=320.95 Aligned_cols=291 Identities=16% Similarity=0.224 Sum_probs=243.9
Q ss_pred ecCCCeeEEEEcCC---CCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC-
Q 001163 354 NQGSAVKSMDFHPV---QQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD- 429 (1134)
Q Consensus 354 ~h~~~V~~v~fsp~---g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 429 (1134)
+|...|++++|+|+ +..++++++.++.|+|||+.+++.+.... ......|...|.+++|+|+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ--------------SYVDADADENFYTCAWTYDS 81 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEE--------------EEECSCTTCCEEEEEEEECT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeee--------------eccccCCCCcEEEEEeccCC
Confidence 38999999999985 55556677777799999999887654311 0012347789999999998
Q ss_pred ---CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEec-CCCceEEEEEeCCCeEEEEECCCCceeEEe--
Q 001163 430 ---GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY-PNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-- 503 (1134)
Q Consensus 430 ---~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-- 503 (1134)
+++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++++.|+.|++||+.+++.+..+
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 6799999999999999999988665 6788999999999999 777 8999999999999999999999988
Q ss_pred -cCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec----------------------------CCCCCe
Q 001163 504 -EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD----------------------------APGHSS 554 (1134)
Q Consensus 504 -~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~----------------------------~~~~~v 554 (1134)
.+|...|.+++|++ ++.+|++++.||.|++||+........+. .+...|
T Consensus 157 ~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (366)
T 3k26_A 157 VEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV 234 (366)
T ss_dssp TTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred cccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence 78999999999976 45899999999999999998654433222 267789
Q ss_pred eEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCee--------------EEEecCCCCCceEEEEEcCC--CCEEEEEeC
Q 001163 555 TMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV--------------KRTYHGLGKRSVGVVQFDTT--KNRFLAAGD 618 (1134)
Q Consensus 555 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~ 618 (1134)
.+++|+ ++++++++.+ +.|++||+.++.. +..+..|.. .+.+++|+|+ +++|++++.
T Consensus 235 ~~~~~~--~~~l~~~~~d----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 235 DCVRWL--GDLILSKSCE----NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp CEEEEE--TTEEEEECSS----SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECT
T ss_pred EEEEEc--CCEEEEEecC----CEEEEEeCCCccccccccccCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEec
Confidence 999998 7789988754 4699999987643 777777776 7899999999 999999999
Q ss_pred CCeEEEEEcCCCce----eEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEcc
Q 001163 619 EFMIKFWDMDNVNL----LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (1134)
Q Consensus 619 dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 672 (1134)
||.|++||+.+++. ...+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99999999998864 3466666557799999999999999999999999999975
No 66
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-32 Score=304.06 Aligned_cols=288 Identities=18% Similarity=0.263 Sum_probs=248.8
Q ss_pred ceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEE
Q 001163 347 KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425 (1134)
Q Consensus 347 ~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 425 (1134)
.+..+.+. |.+.|++++| |++++ +++|+.||.|++||+.+++.... +..|...|.+++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~-l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~~ 66 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSK-VASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSVC 66 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTE-EEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCE-EEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEEE
Confidence 35566665 9999999999 99984 68999999999999988765543 567899999999
Q ss_pred EcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecC
Q 001163 426 WSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 505 (1134)
Q Consensus 426 ~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 505 (1134)
|+|++++|++|+.||.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+..
T Consensus 67 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~ 140 (313)
T 3odt_A 67 YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQA 140 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEEC
T ss_pred ECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEeccc
Confidence 9999999999999999999999876544445568899999999999 466 799999999999999 7888889999
Q ss_pred CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecC-CCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeC
Q 001163 506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 584 (1134)
Q Consensus 506 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 584 (1134)
|...|.++++.+. ++.++++++.|+.|++||. ......+.. +...+.+++|+|++. +++++.+ +.|++||+
T Consensus 141 ~~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d----g~i~i~d~ 212 (313)
T 3odt_A 141 HNASVWDAKVVSF-SENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSND----GLIKLVDM 212 (313)
T ss_dssp CSSCEEEEEEEET-TTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETT----SEEEEEET
T ss_pred CCCceeEEEEccC-CCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCC----CeEEEEEC
Confidence 9999999998762 4479999999999999993 344445555 677999999999998 7777654 46999999
Q ss_pred CCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC
Q 001163 585 SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 664 (1134)
Q Consensus 585 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg 664 (1134)
.+++.+..+.+|.. .+.+++|+|++ .+++++.||.|++||+.+++.+..+..+ ...|.+++|+|+++ +++++.||
T Consensus 213 ~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~~-~~~~~~dg 287 (313)
T 3odt_A 213 HTGDVLRTYEGHES-FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP--AISIWSVDCMSNGD-IIVGSSDN 287 (313)
T ss_dssp TTCCEEEEEECCSS-CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS--SSCEEEEEECTTSC-EEEEETTS
T ss_pred CchhhhhhhhcCCc-eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc--CceEEEEEEccCCC-EEEEeCCC
Confidence 99999999998876 89999999999 6899999999999999999999998866 56899999999998 56799999
Q ss_pred cEEEEEccCC
Q 001163 665 GIKILANADG 674 (1134)
Q Consensus 665 ~i~iw~~~~~ 674 (1134)
.|++|++.++
T Consensus 288 ~i~iw~~~~~ 297 (313)
T 3odt_A 288 LVRIFSQEKS 297 (313)
T ss_dssp CEEEEESCGG
T ss_pred cEEEEeCCCC
Confidence 9999999876
No 67
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.3e-33 Score=318.33 Aligned_cols=308 Identities=15% Similarity=0.193 Sum_probs=248.0
Q ss_pred EEeCCCCeeEEEecCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC-CCcEEE
Q 001163 581 EWNESEGAVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EGILLA 658 (1134)
Q Consensus 581 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~ 658 (1134)
+|+....+....+.+|.. .|.+++|+|++ ++|++++.||.|++||+.+++....+...++...|.+++|+| ++.+|+
T Consensus 57 ~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDR-RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHTTCEEEEEECCCSS-CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred cccccccceEEeccCCCC-CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 345556677778888876 89999999999 999999999999999999999888887656688999999999 789999
Q ss_pred EEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcc
Q 001163 659 VSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTD 738 (1134)
Q Consensus 659 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (1134)
+++.|+.|++||+.+. ....+..
T Consensus 136 s~~~d~~i~iwd~~~~--~~~~~~~------------------------------------------------------- 158 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGS--VIQVFAK------------------------------------------------------- 158 (383)
T ss_dssp EEETTTEEEEEETTSC--EEEEEEC-------------------------------------------------------
T ss_pred EEeCCCEEEEEECCCC--ceEEEec-------------------------------------------------------
Confidence 9999999999998642 1111100
Q ss_pred cccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCccccccc
Q 001163 739 VKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATT 818 (1134)
Q Consensus 739 ~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 818 (1134)
T Consensus 159 -------------------------------------------------------------------------------- 158 (383)
T 3ei3_B 159 -------------------------------------------------------------------------------- 158 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCC
Q 001163 819 NQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDN 897 (1134)
Q Consensus 819 ~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~ 897 (1134)
. .++...|.+++|+|++++|++++ |+.|++||+ +++.+..+.+|...|.+++|+| ++
T Consensus 159 ------------------~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~ 216 (383)
T 3ei3_B 159 ------------------T--DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RC 216 (383)
T ss_dssp ------------------C--CCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SC
T ss_pred ------------------c--CCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CC
Confidence 0 01456788889999999999888 899999998 5778888999999999999999 67
Q ss_pred c-EEEEEeCCCcEEEEEccc----ceEEEeccCccCceEEEEEee-CCCEEEEEeCCCcEEEEECCCCccccceeeeec-
Q 001163 898 N-IIAIGMEDSSIQIYNVRV----DEVKTKLKGHQKRITGLAFSN-TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIP- 970 (1134)
Q Consensus 898 ~-~la~g~~dg~i~iwd~~~----~~~~~~l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~- 970 (1134)
+ +|++|+.|+.|++||+.+ ++.+..+ +|...|++++|+| ++++|++++.|+.|++||+.+++..........
T Consensus 217 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 295 (383)
T 3ei3_B 217 DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHR 295 (383)
T ss_dssp TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBC
T ss_pred CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccc
Confidence 7 999999999999999998 6666666 6999999999999 999999999999999999998765432211110
Q ss_pred -CCCCC-------CCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCC
Q 001163 971 -NGRTA-------SALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEG 1042 (1134)
Q Consensus 971 -~~~~~-------~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg 1042 (1134)
..+.. ....+..++|+|||++ ..+.|+.|++||+.+++.+..+....|...+..++|+|||++|++++ |+
T Consensus 296 ~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~ 373 (383)
T 3ei3_B 296 QFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GF 373 (383)
T ss_dssp CCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TT
T ss_pred ccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CC
Confidence 01110 0123444666666666 22579999999999999998888555778888899999999999997 99
Q ss_pred cEEEeecCC
Q 001163 1043 SVGVLTAST 1051 (1134)
Q Consensus 1043 ~i~vwd~~~ 1051 (1134)
.|++||+.+
T Consensus 374 ~i~iw~~~~ 382 (383)
T 3ei3_B 374 NILIWNRED 382 (383)
T ss_dssp EEEEEECC-
T ss_pred cEEEEecCC
Confidence 999999875
No 68
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.4e-33 Score=318.76 Aligned_cols=290 Identities=14% Similarity=0.091 Sum_probs=244.8
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCcc--ceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRE--RIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 432 (1134)
|...|++++|+|+|+ ++++|+.|+.|+|||+.+++ .+.. +.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCCCCE
Confidence 788999999999999 56899999999999998886 3332 5689999999999999999
Q ss_pred EEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce---e-EEecCCCc
Q 001163 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK---Q-YIFEGHES 508 (1134)
Q Consensus 433 las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~---~-~~~~~h~~ 508 (1134)
|++++.||.|++||+.+++... ...+.+|...|.+++|+|+++ +|++++.|+.|++||+.++.. . ....+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 9999999999999999887433 224578999999999999998 899999999999999988873 3 33467899
Q ss_pred CEEEEeccccCCccEEEEecCCCcEEEEecC------------------CCCceeeecCCCCCeeEEEECcCCCEEEEEe
Q 001163 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYD------------------NLGSRVDYDAPGHSSTMMAYSADGARLFSCG 570 (1134)
Q Consensus 509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 570 (1134)
.|.+++|++ ++.+|++++.|+.|++||+. .......+..+...+.+++|+|++++|++++
T Consensus 144 ~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 144 TVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred CeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 999999976 45899999999999999954 4455566667788999999999999999998
Q ss_pred cCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC--Ccee---------------
Q 001163 571 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN--VNLL--------------- 633 (1134)
Q Consensus 571 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~--------------- 633 (1134)
.++ .|++||+.+++.+..+..+.. .+.+++|+|++.+++++ .|+.|++|++.+ ++..
T Consensus 222 ~d~----~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 222 HDS----TVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp TTT----EEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred CCC----EEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 644 699999999999999998876 89999999999877777 899999999987 4210
Q ss_pred -----------------------EEEecCCCCCCcceEEEc-CCC---cEEEEEECCCcEEEEEccCCce
Q 001163 634 -----------------------ASIDADGGLQASPCIRFN-KEG---ILLAVSTNDNGIKILANADGIR 676 (1134)
Q Consensus 634 -----------------------~~~~~~~~~~~v~~v~~s-p~~---~~l~~~~~dg~i~iw~~~~~~~ 676 (1134)
..+. .+|...|.+++|. ++| .+|++++.||.|++|++.++..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred cchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 1111 2567789999976 576 9999999999999999987643
No 69
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5e-33 Score=321.76 Aligned_cols=347 Identities=14% Similarity=0.187 Sum_probs=243.6
Q ss_pred EEEEeCCCCeeEEEecCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeEEEec-----------CCCCCCcc
Q 001163 579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMDNVNLLASIDA-----------DGGLQASP 646 (1134)
Q Consensus 579 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~ 646 (1134)
+++|+...++....+.+|.. .|.+++|+| ++++|++++.||.|++||+.+++....+.. .++...|.
T Consensus 25 ~~v~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 103 (408)
T 4a11_B 25 RRVLGLELNKDRDVERIHGG-GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVE 103 (408)
T ss_dssp HHHHTEEECTTEEECCCCSS-CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEE
T ss_pred ceeeccccCcceeeeeccCC-cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEE
Confidence 66788877888888888876 999999999 999999999999999999998776554431 23577899
Q ss_pred eEEEcC-CCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCccccc
Q 001163 647 CIRFNK-EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAA 725 (1134)
Q Consensus 647 ~v~~sp-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 725 (1134)
+++|+| ++.++++++.||.|++|++.++ .....+.
T Consensus 104 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~------------------------------------------- 139 (408)
T 4a11_B 104 TVQWYPHDTGMFTSSSFDKTLKVWDTNTL-QTADVFN------------------------------------------- 139 (408)
T ss_dssp EEEECTTCTTCEEEEETTSEEEEEETTTT-EEEEEEE-------------------------------------------
T ss_pred EEEEccCCCcEEEEEeCCCeEEEeeCCCC-ccceecc-------------------------------------------
Confidence 999999 7789999999999999998765 1111110
Q ss_pred ccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeec
Q 001163 726 MVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKW 805 (1134)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~ 805 (1134)
T Consensus 140 -------------------------------------------------------------------------------- 139 (408)
T 4a11_B 140 -------------------------------------------------------------------------------- 139 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcC---CCCeEEEee-CCeEEEEEccCCeEEEEec
Q 001163 806 PRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK---NDSYVMSAS-GGKISLFNMMTFKTMTTFM 881 (1134)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~---dg~~la~~s-dg~i~lwd~~~~~~~~~~~ 881 (1134)
+...+.++++++ ++.++++++ ++.|++||+.+++.+..+.
T Consensus 140 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 183 (408)
T 4a11_B 140 ------------------------------------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ 183 (408)
T ss_dssp ------------------------------------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC
T ss_pred ------------------------------------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec
Confidence 222344444444 445788887 8999999999999999999
Q ss_pred CCCCCeEEEEEcCCCCc-EEEEEeCCCcEEEEEcccce-EEEec---------------cCccCceEEEEEeeCCCEEEE
Q 001163 882 PPPPAATFLAFHPQDNN-IIAIGMEDSSIQIYNVRVDE-VKTKL---------------KGHQKRITGLAFSNTLNVLVS 944 (1134)
Q Consensus 882 ~~~~~v~~l~~sp~~~~-~la~g~~dg~i~iwd~~~~~-~~~~l---------------~~h~~~V~~l~~s~d~~~l~s 944 (1134)
+|...|++++|+| ++. ++++|+.||.|++||+.++. .+..+ .+|...|.+++|+|++++|++
T Consensus 184 ~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 262 (408)
T 4a11_B 184 GHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLT 262 (408)
T ss_dssp CCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEE
T ss_pred CCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEE
Confidence 9999999999999 665 69999999999999998764 33333 578999999999999999999
Q ss_pred EeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEE
Q 001163 945 SGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPIT 1024 (1134)
Q Consensus 945 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~ 1024 (1134)
++.|+.|++||+.+++............... ...........+.+++++.++.|++||+.+++.+..+. +|...|+
T Consensus 263 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~v~ 338 (408)
T 4a11_B 263 VGTDNRMRLWNSSNGENTLVNYGKVCNNSKK--GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK--GHYKTVD 338 (408)
T ss_dssp EETTSCEEEEETTTCCBCCCCCCCCCCCCSS--CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC--CCSSCEE
T ss_pred ecCCCeEEEEECCCCccceeccccccccccc--cceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec--cCCCeEE
Confidence 9999999999999876432211111111110 12233334455666666899999999999999998887 8899999
Q ss_pred EEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163 1025 HATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus 1025 ~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
+++|+||+++|++++.||.|++||+.+++.+....... .. ..+.|.....+.+.+.|+.+++|+.+.
T Consensus 339 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~----------~~--~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 339 CCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETT----------TK--SQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEEECC----------------------------------------------------
T ss_pred EEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceE----------ec--cccccccceeecccCccCceeecCCcc
Confidence 99999999999999999999999999998765443111 01 123343556777889999999998764
No 70
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=316.23 Aligned_cols=289 Identities=13% Similarity=0.193 Sum_probs=240.7
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeC---CCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC--
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTN---MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-- 429 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-- 429 (1134)
|...|++++|+|++.+++++|+. ||.|+|||+.+++..... ..+|...|.+++|+|+
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~------------------~~~~~~~v~~~~~~~~~~ 78 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR------------------EIEKAKPIKCGTFGATSL 78 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE------------------EEEESSCEEEEECTTCCT
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee------------------eecccCcEEEEEEcCCCC
Confidence 99999999999999889889987 999999999988754321 2368999999999998
Q ss_pred -CCEEEEEeCCCEEEEEEccCCc-eeeeeeeeecCCCCEEEEEE------ecCCCceEEEEEeCCCeEEEEECCCCc-ee
Q 001163 430 -GTLFGVAYSKHIVHLYTYHGGD-ELRNHLEIEAHVGSVNDLAF------SYPNKQLSVVTCGEDRVIKVWDAVTGT-KQ 500 (1134)
Q Consensus 430 -~~~las~s~dg~v~iwd~~~~~-~~~~~~~l~~h~~~V~~v~~------s~~~~~~~l~s~s~d~~i~iwd~~~~~-~~ 500 (1134)
+++|++|+.||.|++||+.+++ .+. .+.+|...|.+++| +|+++ +|++++.|+.|++||+.+++ .+
T Consensus 79 ~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~~~~~~~ 153 (357)
T 3i2n_A 79 QQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPRQKDDPV 153 (357)
T ss_dssp TTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTTSCSSCS
T ss_pred CCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCCCCCCcc
Confidence 7999999999999999999887 443 67899999999965 67888 79999999999999999987 77
Q ss_pred EEecCCCc----CEEEEecc--ccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECc---CCCEEEEEec
Q 001163 501 YIFEGHES----PVYSICPH--HKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA---DGARLFSCGT 571 (1134)
Q Consensus 501 ~~~~~h~~----~v~~~~~~--~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~ 571 (1134)
..+..|.+ .|.+++|. .++++.++++++.|+.|++||++...... ...+...+.+++|+| +++++++++.
T Consensus 154 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 232 (357)
T 3i2n_A 154 ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSL 232 (357)
T ss_dssp EEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEES
T ss_pred eeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECC
Confidence 78876655 78888842 23566899999999999999998766533 345677899999999 9999999976
Q ss_pred CCCCCeEEEEEeCCCCeeEEEec-----CCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCc--------------
Q 001163 572 NKEGESYLVEWNESEGAVKRTYH-----GLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNVN-------------- 631 (1134)
Q Consensus 572 ~~~~~~~i~~wd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~-------------- 631 (1134)
++ .|++||+++++....+. +|.. .+.+++|+|++. ++++++.||.|++||+..+.
T Consensus 233 dg----~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~ 307 (357)
T 3i2n_A 233 EG----KFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGV 307 (357)
T ss_dssp TT----EEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCC
T ss_pred CC----eEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccc
Confidence 44 69999998876655444 6665 899999999998 89999999999999997643
Q ss_pred -----eeEEEecCCCCCCcceEEEcCCCcEEE-EEECCCcEEEEEccCC
Q 001163 632 -----LLASIDADGGLQASPCIRFNKEGILLA-VSTNDNGIKILANADG 674 (1134)
Q Consensus 632 -----~~~~~~~~~~~~~v~~v~~sp~~~~l~-~~~~dg~i~iw~~~~~ 674 (1134)
.+..+.. +...|.+++|+|++++|+ +++.||.|++|++.+.
T Consensus 308 ~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 308 AGSVSLLQNVTL--STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCEEEEEEEEEC--CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred ccccceeecccc--CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 4445554 467899999999999888 8999999999999765
No 71
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-33 Score=327.01 Aligned_cols=314 Identities=15% Similarity=0.211 Sum_probs=254.2
Q ss_pred eCCCCCCcccccCCCCCceeEEEe-e-cCCCeeEEEEcC-CCCeEEEEEeCCCcEEEEecCC---ccceeeeceeeeecc
Q 001163 330 YTPQSLGQSSYSTDDLPKTVVMTL-N-QGSAVKSMDFHP-VQQILLVVGTNMGDVMLWEVGS---RERIAVKSFKVWELG 403 (1134)
Q Consensus 330 ~s~~~~~l~~~~~d~~~~~~~~~~-~-h~~~V~~v~fsp-~g~~lla~gs~dg~v~iwd~~~---~~~~~~~~~~~~~~~ 403 (1134)
|+|++..+++........+++..+ . |.+.|++++|+| +++ ++++|+.||+|+|||+.+ +....
T Consensus 35 f~~~~~~~~~~~~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~---------- 103 (437)
T 3gre_A 35 FGPIQEIVRSPNMGNLRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYS---------- 103 (437)
T ss_dssp GCCCCCCCCCCCGGGCCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCS----------
T ss_pred cCCccccccccccccccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccc----------
Confidence 788888877665444566778888 4 789999999999 888 568999999999999976 32111
Q ss_pred ccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEcc---CCceeeeee-----e--eec--CCCCEEEEE-
Q 001163 404 ACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYH---GGDELRNHL-----E--IEA--HVGSVNDLA- 470 (1134)
Q Consensus 404 ~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~---~~~~~~~~~-----~--l~~--h~~~V~~v~- 470 (1134)
.....+|...|.+++|+|++++|++|+.||.|++||+. +++...... . +.. +...+.++.
T Consensus 104 -------~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 176 (437)
T 3gre_A 104 -------SSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRA 176 (437)
T ss_dssp -------CSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEE
T ss_pred -------eeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEE
Confidence 00122599999999999999999999999999999995 554333111 1 112 566777777
Q ss_pred -EecCCCceEEEEEeCCCeEEEEECCCCceeEEecC--CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee
Q 001163 471 -FSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG--HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY 547 (1134)
Q Consensus 471 -~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 547 (1134)
+++++. +|++++.|+.|++||+.+++++..+.+ |...|.+++|+++ +.+|++|+.||.|++||++.......+
T Consensus 177 ~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~ 252 (437)
T 3gre_A 177 FVNEEKS--LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEE--CCVLILGTTRGIIDIWDIRFNVLIRSW 252 (437)
T ss_dssp EECSSCE--EEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTT--SCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEcCCCC--EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCC--CCEEEEEcCCCeEEEEEcCCccEEEEE
Confidence 456777 899999999999999999999999998 8999999999654 589999999999999999987776666
Q ss_pred c-CCCCCeeEEEEC----cCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCC-------------------------C
Q 001163 548 D-APGHSSTMMAYS----ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL-------------------------G 597 (1134)
Q Consensus 548 ~-~~~~~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-------------------------~ 597 (1134)
. .+...|.+++|+ +++.++++++. ++.|++||+.+++.+..+.++ +
T Consensus 253 ~~~~~~~v~~~~~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 328 (437)
T 3gre_A 253 SFGDHAPITHVEVCQFYGKNSVIVVGGSS----KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS 328 (437)
T ss_dssp BCTTCEEEEEEEECTTTCTTEEEEEEEST----TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred ecCCCCceEEEEeccccCCCccEEEEEcC----CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence 5 556689999655 56778998865 457999999999998888765 2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCC-----------------------------------CC
Q 001163 598 KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG-----------------------------------GL 642 (1134)
Q Consensus 598 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------------------------~~ 642 (1134)
...|.+++|+ ++++|++++.||.|++||+.+++....+..+. |.
T Consensus 329 ~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 407 (437)
T 3gre_A 329 LNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHH 407 (437)
T ss_dssp GGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------C
T ss_pred CCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccc
Confidence 2357889999 77899999999999999999999887776531 57
Q ss_pred CCcceEEEcCC--CcEEEEEECCCcEEEEE
Q 001163 643 QASPCIRFNKE--GILLAVSTNDNGIKILA 670 (1134)
Q Consensus 643 ~~v~~v~~sp~--~~~l~~~~~dg~i~iw~ 670 (1134)
..|++++|+++ +.+|++|+.||.|+||+
T Consensus 408 ~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 408 DIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 78999999998 78999999999999994
No 72
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-32 Score=307.44 Aligned_cols=301 Identities=12% Similarity=0.162 Sum_probs=247.1
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 492 (1134)
.+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLW 101 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEE
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 378999999999999999999999999999999999988665 6889999999999999999 89999999999999
Q ss_pred ECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCC-----CcEEEEecCCCCc-----------eeeecCCCC--Ce
Q 001163 493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATD-----GKIKAWLYDNLGS-----------RVDYDAPGH--SS 554 (1134)
Q Consensus 493 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~-----------~~~~~~~~~--~v 554 (1134)
|+.+++.+..+. |...|.+++|++ ++.++++++.+ +.|++||+..... ...+..+.. .+
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred ECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 999999999888 889999999965 45899999998 9999999986543 222333444 89
Q ss_pred eEEEECcCCCEEEEEecCCCCCeEEEEEeCCC-CeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcee
Q 001163 555 TMMAYSADGARLFSCGTNKEGESYLVEWNESE-GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL 633 (1134)
Q Consensus 555 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 633 (1134)
.+++|+|+++++++++.+ +.|++||+.+ ++.+..+..|.. .+.+++|+|++++|++++.||.|++||+.+++.+
T Consensus 179 ~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHKD----GKISKYDVSNNYEYVDSIDLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL 253 (369)
T ss_dssp EEEEECGGGCEEEEEETT----SEEEEEETTTTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEcCCCCEEEEEcCC----CEEEEEECCCCcEeEEEEecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence 999999999999998764 4699999999 788888888876 8999999999999999999999999999999999
Q ss_pred EEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccc
Q 001163 634 ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVG 713 (1134)
Q Consensus 634 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 713 (1134)
..+.. ...+.+++|+|++.++++++.++...+|......
T Consensus 254 ~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------------------------- 292 (369)
T 3zwl_B 254 KKYET---DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANE-------------------------------------- 292 (369)
T ss_dssp EEEEC---SSCEEEEEECSSSSEEEEEECCC-------------------------------------------------
T ss_pred eeecC---CCCceeEEecCCCceEEEeecCCCceEEEEecCC--------------------------------------
Confidence 88873 4578999999999999999999865555432210
Q ss_pred cCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeee
Q 001163 714 TSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILA 793 (1134)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~ 793 (1134)
....+++|+......... + .+|...|.+++|+|++++|++
T Consensus 293 ---------------------------------~~~~i~~~d~~~~~~~~~---~----~~~~~~v~~~~~s~~~~~l~s 332 (369)
T 3zwl_B 293 ---------------------------------GKFEARFYHKIFEEEIGR---V----QGHFGPLNTVAISPQGTSYAS 332 (369)
T ss_dssp -----------------------------------CEEEEEETTTCCEEEE---E----ECCSSCEEEEEECTTSSEEEE
T ss_pred ---------------------------------CcceeEEEecCCCcchhh---e----ecccCcEEEEEECCCCCEEEE
Confidence 002345555443211111 1 237789999999999999999
Q ss_pred eccCCeEEeeecCC
Q 001163 794 LASNAVHKLWKWPR 807 (1134)
Q Consensus 794 ~~~dg~i~vw~~~~ 807 (1134)
++.||.+++|++..
T Consensus 333 ~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 333 GGEDGFIRLHHFEK 346 (369)
T ss_dssp EETTSEEEEEEECH
T ss_pred EcCCCeEEEEECcc
Confidence 99999999999874
No 73
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.3e-33 Score=314.24 Aligned_cols=305 Identities=12% Similarity=0.087 Sum_probs=233.6
Q ss_pred eecCCCeeEEEEcCCCCeEEEEEeCCC-------cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEE
Q 001163 353 LNQGSAVKSMDFHPVQQILLVVGTNMG-------DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425 (1134)
Q Consensus 353 ~~h~~~V~~v~fsp~g~~lla~gs~dg-------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 425 (1134)
+.-..+|++++|+|||+ +||+|+.|. .|+||++..+.......+. ......+.+|...|.+++
T Consensus 11 ~~~g~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~---------~~~~~~l~~~~~~v~s~~ 80 (365)
T 4h5i_A 11 YNVGYPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH---------ILSEFALEDNDDSPTAID 80 (365)
T ss_dssp EECSSCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE---------EEEEEECCTTSCCCCEEE
T ss_pred cCCCCCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeee---------eeeEEEccCCCCceEEEE
Confidence 34567899999999998 667876543 5999999876543211111 001112678899998887
Q ss_pred EcCCCCEEEEE-----------eCCCEEEEEEccCCceeee-ee-----eeecCCCCEEEEEEecCCCceEEEEEeCCCe
Q 001163 426 WSPDGTLFGVA-----------YSKHIVHLYTYHGGDELRN-HL-----EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV 488 (1134)
Q Consensus 426 ~spd~~~las~-----------s~dg~v~iwd~~~~~~~~~-~~-----~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~ 488 (1134)
++ ++.+++| +.|+.+++|++.+...... .. ....+...+.+++|||||+.+.+++++.|++
T Consensus 81 ~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~ 158 (365)
T 4h5i_A 81 AS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAI 158 (365)
T ss_dssp EE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCE
T ss_pred eC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCE
Confidence 64 5566665 4577899999876543211 11 1234556799999999999644567778999
Q ss_pred EEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceee--ecCCCCCeeEEEECcCCCEE
Q 001163 489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD--YDAPGHSSTMMAYSADGARL 566 (1134)
Q Consensus 489 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l 566 (1134)
|+|||+.+++++..+. |...|.+++|+| +|.++++++.+ .+++|+..++..... ...+...+.+++|+|+++++
T Consensus 159 i~iwd~~~~~~~~~~~-~~~~V~~v~fsp--dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l 234 (365)
T 4h5i_A 159 MRIIDPSDLTEKFEIE-TRGEVKDLHFST--DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVL 234 (365)
T ss_dssp EEEEETTTTEEEEEEE-CSSCCCEEEECT--TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEE
T ss_pred EEEeECCCCcEEEEeC-CCCceEEEEEcc--CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEE
Confidence 9999999999999886 778899999965 55899999855 556666666655443 33455689999999999999
Q ss_pred EEEecCCCCCeEEEEEeCCCCee----EEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCC
Q 001163 567 FSCGTNKEGESYLVEWNESEGAV----KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGL 642 (1134)
Q Consensus 567 ~~~~~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 642 (1134)
++++.++.....+++|+...+.. ...+.+|.. .|.+++|+|++++|++|+.|++|+|||+.+++++..+.. +|.
T Consensus 235 ~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~-gH~ 312 (365)
T 4h5i_A 235 IAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ-AHS 312 (365)
T ss_dssp EEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT-SSS
T ss_pred EEEecCCcceeEEeecccccceecceeeeeecCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC-ccc
Confidence 99998877677899999877643 345667766 899999999999999999999999999999999887531 447
Q ss_pred CCcceEEEcCCCcEEEEEECCCcEEEEEccCCc
Q 001163 643 QASPCIRFNKEGILLAVSTNDNGIKILANADGI 675 (1134)
Q Consensus 643 ~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 675 (1134)
..|++++|+|||++||+++.|++|+||++....
T Consensus 313 ~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 313 FAITEVTISPDSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 799999999999999999999999999997653
No 74
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.1e-32 Score=313.79 Aligned_cols=256 Identities=11% Similarity=0.070 Sum_probs=221.2
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCc------eeeeeeeeecCCCCEEEEEEecC----C---CceE
Q 001163 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD------ELRNHLEIEAHVGSVNDLAFSYP----N---KQLS 479 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~------~~~~~~~l~~h~~~V~~v~~s~~----~---~~~~ 479 (1134)
.+.+|.+.|++++|+| ++|++|+.||.|++||+.+++ .+. .+.+|...|.+++|+|+ + + +
T Consensus 11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~g~~~~--~ 83 (397)
T 1sq9_A 11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSY---SHFVHKSGLHHVDVLQAIERDAFELC--L 83 (397)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEE---EEECCTTCEEEEEEEEEEETTTEEEE--E
T ss_pred hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcce---EEecCCCcEEEEEEecccccCCcccc--E
Confidence 4789999999999999 899999999999999999886 333 57799999999999999 8 7 8
Q ss_pred EEEEeCCCeEEEEECCCCce-----eEEecCC-----CcCEEEEecccc--CCccE-EEEecCCCcEEEEecCC------
Q 001163 480 VVTCGEDRVIKVWDAVTGTK-----QYIFEGH-----ESPVYSICPHHK--ENIQF-IFSTATDGKIKAWLYDN------ 540 (1134)
Q Consensus 480 l~s~s~d~~i~iwd~~~~~~-----~~~~~~h-----~~~v~~~~~~~~--~~~~~-l~s~s~dg~i~vwd~~~------ 540 (1134)
|++++.|+.|++||+.+++. +..+..| ...|.+++|++. +++.+ |++++.||.|++||+..
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 99999999999999999887 8889888 599999999722 45588 99999999999999987
Q ss_pred CCcee-----ee-------cCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecC---C---CCCceE
Q 001163 541 LGSRV-----DY-------DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG---L---GKRSVG 602 (1134)
Q Consensus 541 ~~~~~-----~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~---~~~~v~ 602 (1134)
..... .+ ..+...+.+++|+|++ .+++++.+ +.|++||+++++.+..+.. | .. .+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~h~~~~~-~i~ 237 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN----GTVQISELSTLRPLYNFESQHSMINNSN-SIR 237 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT----SEEEEEETTTTEEEEEEECCC---CCCC-CEE
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC----CcEEEEECCCCceeEEEeccccccccCC-ccc
Confidence 55544 44 4467789999999999 88888754 4699999999999999988 6 55 899
Q ss_pred EEEEcCCCCEEEEEeCC---CeEEEEEcCCCceeEEEecCC-----------CCCCcceEEEcCCCcEEEEEECCCcEEE
Q 001163 603 VVQFDTTKNRFLAAGDE---FMIKFWDMDNVNLLASIDADG-----------GLQASPCIRFNKEGILLAVSTNDNGIKI 668 (1134)
Q Consensus 603 ~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~sp~~~~l~~~~~dg~i~i 668 (1134)
+++|+|++++|++++.| |.|++||+.+++.+..+.... +...|.+++|+|++++|++++.||.|++
T Consensus 238 ~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 317 (397)
T 1sq9_A 238 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF 317 (397)
T ss_dssp EEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred eEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 99999999999999999 999999999999998887611 3668999999999999999999999999
Q ss_pred EEccCCceeEEEec
Q 001163 669 LANADGIRLLRTVE 682 (1134)
Q Consensus 669 w~~~~~~~~~~~~~ 682 (1134)
||+.++ ..+..+.
T Consensus 318 wd~~~~-~~~~~~~ 330 (397)
T 1sq9_A 318 WDVKTK-ERITTLN 330 (397)
T ss_dssp EETTTT-EEEEEEE
T ss_pred EEcCCC-ceeEEEe
Confidence 999887 5555554
No 75
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6e-33 Score=323.08 Aligned_cols=301 Identities=15% Similarity=0.185 Sum_probs=227.6
Q ss_pred EecCCCCCceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC-CCcEEEEEECCCcEEEE
Q 001163 592 TYHGLGKRSVGVVQFDTT-KNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EGILLAVSTNDNGIKIL 669 (1134)
Q Consensus 592 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~~dg~i~iw 669 (1134)
....|.. .|++++|+|. ++.|++|+.||.|+|||+.+++....+...+|...|++++|+| ++.+|++++.||+|++|
T Consensus 114 ~~~~~~~-~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 114 KAAPFDR-RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp EEEECSS-CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred cCCCCCC-CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 3444544 7999999994 5789999999999999999888777777667788999999998 78999999999999999
Q ss_pred EccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccccc
Q 001163 670 ANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVE 749 (1134)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 749 (1134)
|+.++ ....+..
T Consensus 193 d~~~~--~~~~~~~------------------------------------------------------------------ 204 (435)
T 4e54_B 193 DFKGN--ILRVFAS------------------------------------------------------------------ 204 (435)
T ss_dssp ETTSC--EEEEEEC------------------------------------------------------------------
T ss_pred eccCC--ceeEEec------------------------------------------------------------------
Confidence 98643 1110000
Q ss_pred ccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCC
Q 001163 750 KSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPS 829 (1134)
Q Consensus 750 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~ 829 (1134)
. +
T Consensus 205 ---------------------------------------------~-~-------------------------------- 206 (435)
T 4e54_B 205 ---------------------------------------------S-D-------------------------------- 206 (435)
T ss_dssp ---------------------------------------------C-S--------------------------------
T ss_pred ---------------------------------------------c-C--------------------------------
Confidence 0 0
Q ss_pred CcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 001163 830 GILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSS 908 (1134)
Q Consensus 830 ~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~ 908 (1134)
.+...+.+++|+|++++|++|+ ||.|++||+. ++.+..+.+|...|++++|+|++..++++|+.|+.
T Consensus 207 -----------~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~ 274 (435)
T 4e54_B 207 -----------TINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQT 274 (435)
T ss_dssp -----------SCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSB
T ss_pred -----------CCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcce
Confidence 0234456788888888888888 8889999985 45667788899999999999955568999999999
Q ss_pred EEEEEcccceEEE---eccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEE
Q 001163 909 IQIYNVRVDEVKT---KLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQF 985 (1134)
Q Consensus 909 i~iwd~~~~~~~~---~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~f 985 (1134)
|+|||+.+++... ...+|...|++++|+|+|++|++++.|++|++||+.+++....... ..........+....|
T Consensus 275 v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 352 (435)
T 4e54_B 275 VKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIP--HPHRHFQHLTPIKAAW 352 (435)
T ss_dssp CCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECC--CCCCCCSSSCCCBCEE
T ss_pred eeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEec--ccccccccceeEEEEE
Confidence 9999998876443 3467999999999999999999999999999999998764321111 0000000012334456
Q ss_pred cCCCCEEEEE-------------eeceEEEEeCCCcccceeeccCCCccCEEEE-EEccCCCEEEEEecCCcEEEeecCC
Q 001163 986 HLDQTHLLAV-------------HETQIAIYEAPKLECLKQFVPREASGPITHA-TYSCDSQSIYVAFEEGSVGVLTAST 1051 (1134)
Q Consensus 986 s~dg~~l~~~-------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~-~~s~dg~~l~s~s~Dg~i~vwd~~~ 1051 (1134)
+|++.+++++ .++.|++||..+++.+..+. .+|...|.++ +|+|||++|++|+ |++|+||++.+
T Consensus 353 ~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~-~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 353 HPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY-DPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp CSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC-CSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred cCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe-CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence 6666655553 23579999999999888775 3678888887 6999999999886 78999999999
Q ss_pred Ccce
Q 001163 1052 LRLR 1055 (1134)
Q Consensus 1052 ~~~~ 1055 (1134)
++..
T Consensus 431 gk~r 434 (435)
T 4e54_B 431 ARTR 434 (435)
T ss_dssp ----
T ss_pred Ceee
Confidence 8753
No 76
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.7e-32 Score=334.36 Aligned_cols=257 Identities=19% Similarity=0.251 Sum_probs=218.4
Q ss_pred ccccCCCCEEEEEEcCC-CCEEEEEeCCCEEEEEEccCCcee--eeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeE
Q 001163 413 LSSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGGDEL--RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI 489 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~spd-~~~las~s~dg~v~iwd~~~~~~~--~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i 489 (1134)
.+.+|.+.|++++|+|+ +++|++|+.|++|++||+.+.... .....+.+|...|.+++|+|+++ +|+||+.|++|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence 36799999999999996 579999999999999999865321 12336889999999999999999 89999999999
Q ss_pred EEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee---cCCCCCeeEEEECcCC--C
Q 001163 490 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY---DAPGHSSTMMAYSADG--A 564 (1134)
Q Consensus 490 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~s~~~--~ 564 (1134)
++||+.+++.+..+.+|...|.+++|+++ +.+|++++.|++|++||.......... ..|...|.+++|+|++ .
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLD--NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTT--SSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeCC--CCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 99999999999999999999999999654 488999999999999997643222221 3456689999999987 5
Q ss_pred EEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCC
Q 001163 565 RLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQA 644 (1134)
Q Consensus 565 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 644 (1134)
.+++++.|+ .|++||+.+++....+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+.. ...
T Consensus 533 ~l~s~s~d~----~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~---~~~ 604 (694)
T 3dm0_A 533 TIVSASWDK----TVKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA---NSV 604 (694)
T ss_dssp EEEEEETTS----CEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC---SSC
T ss_pred eEEEEeCCC----eEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC---CCc
Confidence 788887654 599999999999999999887 899999999999999999999999999999998877654 346
Q ss_pred cceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEecc
Q 001163 645 SPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVES 683 (1134)
Q Consensus 645 v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 683 (1134)
+.+++|+|++.++++++ ++.|++||+.++ ..+..+..
T Consensus 605 v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~-~~~~~~~~ 641 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAAT-EHGIKIWDLESK-SIVEDLKV 641 (694)
T ss_dssp EEEEEECSSSSEEEEEE-TTEEEEEETTTT-EEEEEECC
T ss_pred EEEEEEcCCCcEEEEEc-CCCEEEEECCCC-CChhhhcc
Confidence 89999999998888766 556999999987 55555543
No 77
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.7e-32 Score=308.47 Aligned_cols=203 Identities=14% Similarity=0.112 Sum_probs=169.6
Q ss_pred CCCCeeEEEEcCCCCeEEEee---CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce
Q 001163 842 PEDAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE 918 (1134)
Q Consensus 842 h~~~v~~v~~s~dg~~la~~s---dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~ 918 (1134)
+...+.+++|||||+++++++ |++|+|||+.+++++..+. |...|.+++|+| +++++++++.+ .+++|+..+++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence 556788999999999987654 6899999999999999987 778899999999 89999999854 57777777776
Q ss_pred EE--EeccCccCceEEEEEeeCCCEEEEEeCCC----cEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEE
Q 001163 919 VK--TKLKGHQKRITGLAFSNTLNVLVSSGADS----QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHL 992 (1134)
Q Consensus 919 ~~--~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l 992 (1134)
.+ ....+|...|.+++|+|+++++++++.|+ .+++|++.......... ....++. ..|.+++|||||++|
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~---~~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRS-KQVTNRF---KGITSMDVDMKGELA 284 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEE-EEEESSC---SCEEEEEECTTSCEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceee-eeecCCC---CCeEeEEECCCCCce
Confidence 55 34567999999999999999999999887 58889887654322222 2223333 469999999999999
Q ss_pred EE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCC
Q 001163 993 LA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTL 1052 (1134)
Q Consensus 993 ~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~ 1052 (1134)
|+ +.|++|+|||+.+++++..+. .+|...|++++|||||++|||+|.|++|+|||+...
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~-~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFK-QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEET-TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEcCCCEEEEEECCCCcEEEEec-CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99 588999999999999888764 389999999999999999999999999999999754
No 78
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.3e-32 Score=297.17 Aligned_cols=252 Identities=15% Similarity=0.248 Sum_probs=212.8
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecC--CCceEEEEEeCCCeEEE
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIKV 491 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~i 491 (1134)
+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. ......+.+|.++|++++|+++ ++ +|+||+.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-~~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-BCCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-cEEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence 67899999999999999999999999999999997542 1123368899999999999864 66 8999999999999
Q ss_pred EECCCCc--eeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCc--eeeecCCCCCeeEEEECcC-----
Q 001163 492 WDAVTGT--KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS--RVDYDAPGHSSTMMAYSAD----- 562 (1134)
Q Consensus 492 wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~----- 562 (1134)
||+.+++ .+..+.+|...|.+++|+++.++.+|++++.|+.|++||++.... ...+..|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 567788999999999998875568999999999999999986532 3456678889999999997
Q ss_pred --------CCEEEEEecCCCCCeEEEEEeCCCCe----eEEEecCCCCCceEEEEEcCCC---CEEEEEeCCCeEEEEEc
Q 001163 563 --------GARLFSCGTNKEGESYLVEWNESEGA----VKRTYHGLGKRSVGVVQFDTTK---NRFLAAGDEFMIKFWDM 627 (1134)
Q Consensus 563 --------~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~ 627 (1134)
+++|++++.|+ .|++||+.+++ ....+.+|.. .|.+++|+|++ .+|++++.|++|++||+
T Consensus 162 ~~~~~~~~~~~l~sgs~D~----~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADN----LVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp --------CCEEEEEETTS----CEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccCCCCCCcceEEEEcCCC----cEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 57899998755 49999998765 5677888876 89999999985 89999999999999999
Q ss_pred CCCce---eEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163 628 DNVNL---LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (1134)
Q Consensus 628 ~~~~~---~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 673 (1134)
++... ...+..+.+...|.+++|+|+|++|++++.||.|++|+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 87531 22232235567899999999999999999999999999763
No 79
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-31 Score=308.65 Aligned_cols=287 Identities=17% Similarity=0.269 Sum_probs=241.4
Q ss_pred CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEe
Q 001163 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 437 (1134)
Q Consensus 358 ~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s 437 (1134)
.+.+++|++ ..+ ++++.||.|+|||+.+++..... ...|...|.+++|+|++++|++|+
T Consensus 95 ~~~~~~~s~--~~l-~~~~~d~~v~lw~~~~~~~~~~~------------------~~~~~~~v~~v~~s~~~~~l~~~~ 153 (401)
T 4aez_A 95 YLNLLDWSN--LNV-VAVALERNVYVWNADSGSVSALA------------------ETDESTYVASVKWSHDGSFLSVGL 153 (401)
T ss_dssp TCBCEEECT--TSE-EEEEETTEEEEEETTTCCEEEEE------------------ECCTTCCEEEEEECTTSSEEEEEE
T ss_pred eEEEEeecC--CCE-EEEECCCeEEEeeCCCCcEeEee------------------ecCCCCCEEEEEECCCCCEEEEEC
Confidence 355677775 334 57789999999999998765431 234889999999999999999999
Q ss_pred CCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECC-CCceeEEecCCCcCEEEEecc
Q 001163 438 SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV-TGTKQYIFEGHESPVYSICPH 516 (1134)
Q Consensus 438 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~ 516 (1134)
.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++++.|+.|++||+. .+..+..+.+|...|.+++|+
T Consensus 154 ~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 226 (401)
T 4aez_A 154 GNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR 226 (401)
T ss_dssp TTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc
Confidence 99999999999988665 677999999999994 55 79999999999999998 567788899999999999997
Q ss_pred ccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCC
Q 001163 517 HKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 596 (1134)
Q Consensus 517 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 596 (1134)
+ ++.+|++++.|+.|++||+........+..+...|.+++|+|++..+++.+. +..++.|++||+.+++.+..+..+
T Consensus 227 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~~~~~~~~ 303 (401)
T 4aez_A 227 S--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGARVNTVDAG 303 (401)
T ss_dssp T--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCEEEEEECS
T ss_pred C--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCEEEEEeCC
Confidence 6 5589999999999999999988888888888889999999998765555431 122557999999999999888643
Q ss_pred CCCceEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 597 GKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 597 ~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
..+.+++|+|+++++++++ .||.|++||+.+++........++...|.+++|+|++.+|++++.||.|++|++.++
T Consensus 304 --~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 304 --SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp --SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred --CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 3799999999999999954 899999999999877766554456789999999999999999999999999999887
Q ss_pred cee
Q 001163 675 IRL 677 (1134)
Q Consensus 675 ~~~ 677 (1134)
...
T Consensus 382 ~~~ 384 (401)
T 4aez_A 382 DHV 384 (401)
T ss_dssp ---
T ss_pred ccc
Confidence 433
No 80
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-33 Score=323.66 Aligned_cols=286 Identities=14% Similarity=0.064 Sum_probs=223.0
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCc--cceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSR--ERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 432 (1134)
+.+.|++++|+|+|+ ++|+|+.||.|+|||+.++ +.+. .+.+|...|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCCCE
Confidence 567899999999999 5689999999999999887 3332 26789999999999999999
Q ss_pred EEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc---eeEEecC-CCc
Q 001163 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT---KQYIFEG-HES 508 (1134)
Q Consensus 433 las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~---~~~~~~~-h~~ 508 (1134)
|++++.|+.|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998873333446788999999999999999 79999999999999999887 4778887 999
Q ss_pred CEEEEeccccCCccEEEEecCCCcEEEEecCCC------------------CceeeecCCCCCeeEEEECcCCCEEEEEe
Q 001163 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNL------------------GSRVDYDAPGHSSTMMAYSADGARLFSCG 570 (1134)
Q Consensus 509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 570 (1134)
.|.+++|++ ++.+|++++.|+.|++||+... .....+ .+...|.+++|+|++++|++++
T Consensus 148 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 148 TILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 999999976 4589999999999999998532 222334 6777899999999999999998
Q ss_pred cCCCCCeEEEEEeCCCCee----EEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc---------------
Q 001163 571 TNKEGESYLVEWNESEGAV----KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN--------------- 631 (1134)
Q Consensus 571 ~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------- 631 (1134)
.++ .|++||+.+++. +..+.+|.. .+.+++|+|++++|++++.++.+ +|+.....
T Consensus 225 ~d~----~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 225 HDS----SVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp TTT----EEC-CEECSTTSCEEECCCEECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred CCC----cEEEEECCCCCCcceeeEeecCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence 644 699999999887 777888876 89999999999999888877666 66654211
Q ss_pred ------------------------eeEEEec-----------CCCCCCcceEEEcCC-Cc---EEEEEECCCcEEEEEc
Q 001163 632 ------------------------LLASIDA-----------DGGLQASPCIRFNKE-GI---LLAVSTNDNGIKILAN 671 (1134)
Q Consensus 632 ------------------------~~~~~~~-----------~~~~~~v~~v~~sp~-~~---~l~~~~~dg~i~iw~~ 671 (1134)
....... ..|...|.++++.+. +. .|++++.||.|++||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000000 125678899987653 33 6999999999999984
No 81
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.2e-33 Score=318.56 Aligned_cols=294 Identities=16% Similarity=0.168 Sum_probs=223.0
Q ss_pred ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163 775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 854 (1134)
Q Consensus 775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d 854 (1134)
+...|.+++|+|+|++|++++.|+.|++|++..... .. ...+.+ |...|.+++|+|+
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~--------------------~~-~~~~~~--h~~~v~~~~~s~~ 66 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW--------------------KH-ARTFSD--HDKIVTCVDWAPK 66 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE--------------------EE-CCCBCC--CSSCEEEEEECTT
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce--------------------EE-EEEEec--CCceEEEEEEeCC
Confidence 457899999999999999999999999998763200 11 112333 8999999999999
Q ss_pred CCeEEEee-CCeEEEEEccCCe---EEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce---EEEeccC-c
Q 001163 855 DSYVMSAS-GGKISLFNMMTFK---TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE---VKTKLKG-H 926 (1134)
Q Consensus 855 g~~la~~s-dg~i~lwd~~~~~---~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~---~~~~l~~-h 926 (1134)
+++|++++ |++|++||+.+++ ....+.+|...|.+++|+| ++++|++|+.|+.|++||+.+++ ....+.+ |
T Consensus 67 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h 145 (377)
T 3dwl_C 67 SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPL 145 (377)
T ss_dssp TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSC
T ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeeccc
Confidence 99999999 8999999999877 6777888999999999999 89999999999999999999887 4677777 9
Q ss_pred cCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCcccc-------------ceeeeecCCCCCCCCCceEEEEcCCCCEEE
Q 001163 927 QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQA-------------SKFLTIPNGRTASALADTRVQFHLDQTHLL 993 (1134)
Q Consensus 927 ~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~-------------~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~ 993 (1134)
...|++++|+|++++|++++.|++|++||+...+... ...+... +|. ..|.+++|+|+|++|+
T Consensus 146 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~sp~~~~l~ 221 (377)
T 3dwl_C 146 RSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG---GWVHAVGFSPSGNALA 221 (377)
T ss_dssp CSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS---SSEEEEEECTTSSCEE
T ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC---ceEEEEEECCCCCEEE
Confidence 9999999999999999999999999999986433111 1233333 443 5799999999999999
Q ss_pred E-EeeceEEEEeCCCccc----ceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecC-CCcc-eeecC-------
Q 001163 994 A-VHETQIAIYEAPKLEC----LKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAS-TLRL-RCRIN------- 1059 (1134)
Q Consensus 994 ~-~~d~~i~iwd~~~~~~----~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~-~~~~-~~~~~------- 1059 (1134)
+ +.|+.|++||+.+++. +..+. +|...|.+++|+|||++|++++.|+.+ +|+.. ++.. ...+.
T Consensus 222 ~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 222 YAGHDSSVTIAYPSAPEQPPRALITVK--LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp EEETTTEEC-CEECSTTSCEEECCCEE--CSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred EEeCCCcEEEEECCCCCCcceeeEeec--CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence 8 5889999999999987 66665 789999999999999999999877766 55554 3311 11111
Q ss_pred ------------------------------------CCcccCCCCCCCceeEEEEecCCCCC---EEEEEecCCcEEEEe
Q 001163 1060 ------------------------------------PTAYLPTNPSLRVYPLVIAGNPTDPN---QFALGLTDGGVYIIE 1100 (1134)
Q Consensus 1060 ------------------------------------~~~~~~~~h~~~v~~~~~~~~p~~~~---~l~s~~~Dg~v~vW~ 1100 (1134)
....+...|.+.|..+.+ .+.++. .|++++.||.|++||
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~--~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRP--YAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEE--EEEETTEEEEEEEEETTSEEEEEC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEec--cCCCCCceEEEEeecCCCcEEEec
Confidence 000122348899988843 343344 799999999999998
Q ss_pred C
Q 001163 1101 P 1101 (1134)
Q Consensus 1101 ~ 1101 (1134)
+
T Consensus 377 l 377 (377)
T 3dwl_C 377 L 377 (377)
T ss_dssp C
T ss_pred C
Confidence 6
No 82
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.5e-31 Score=306.74 Aligned_cols=283 Identities=14% Similarity=0.239 Sum_probs=240.7
Q ss_pred CCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001163 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 436 (1134)
Q Consensus 357 ~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~ 436 (1134)
...+.|+||+++ +||+|. |++|+|||+.+|+.+.... +.+|...|++|+|+|||++||+|
T Consensus 106 ~y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~-----------------~~~~~~~V~sv~fspdg~~lasg 165 (420)
T 4gga_A 106 YYLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVG 165 (420)
T ss_dssp TTCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEE
T ss_pred ccceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCcEEEEEECCCCCEEEEE
Confidence 346789999865 677775 8999999999998665311 46788999999999999999999
Q ss_pred eCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC-ceeEEecCCCcCEEEEec
Q 001163 437 YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSICP 515 (1134)
Q Consensus 437 s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~ 515 (1134)
+.||+|+|||+.+++.+. .+.+|...|.+++|+ +. +|++|+.|+.+++||.... ..+..+.+|...+..+.+
T Consensus 166 s~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~ 238 (420)
T 4gga_A 166 TSSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 238 (420)
T ss_dssp ETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred ECCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeee
Confidence 999999999999998766 688999999998875 55 7999999999999998864 556788999999999998
Q ss_pred cccCCccEEEEecCCCcEEEEecCCCCc----eeeecCCCCCeeEEEECcCCCEE-EEEecCCCCCeEEEEEeCCCCeeE
Q 001163 516 HHKENIQFIFSTATDGKIKAWLYDNLGS----RVDYDAPGHSSTMMAYSADGARL-FSCGTNKEGESYLVEWNESEGAVK 590 (1134)
Q Consensus 516 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~~~~~~i~~wd~~~~~~~ 590 (1134)
.+ ++.++++++.|+.+++|+...... ......+...|.+++|+|++..+ ++++. ..++.|++||+.+++..
T Consensus 239 ~~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~ 314 (420)
T 4gga_A 239 AP--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACL 314 (420)
T ss_dssp CT--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEE
T ss_pred cC--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccc
Confidence 65 458999999999999999987553 33455677799999999977644 44443 33567999999999999
Q ss_pred EEecCCCCCceEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEE
Q 001163 591 RTYHGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI 668 (1134)
Q Consensus 591 ~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~i 668 (1134)
..+..+. .+.++.|+++++.+++++ .|+.|+|||+.+++++..+.+| ...|.+++|+|+|.+|++|+.||+|++
T Consensus 315 ~~~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH--~~~V~~l~~spdg~~l~S~s~D~tvri 390 (420)
T 4gga_A 315 SAVDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSPDGATVASAAADETLRL 390 (420)
T ss_dssp EEEECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred eeecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence 9888765 688899999999998876 7899999999999999999865 779999999999999999999999999
Q ss_pred EEccCC
Q 001163 669 LANADG 674 (1134)
Q Consensus 669 w~~~~~ 674 (1134)
|++.+.
T Consensus 391 Wdv~~~ 396 (420)
T 4gga_A 391 WRCFEL 396 (420)
T ss_dssp ECCSCS
T ss_pred EECCCC
Confidence 998765
No 83
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=9.6e-32 Score=305.83 Aligned_cols=250 Identities=16% Similarity=0.230 Sum_probs=211.0
Q ss_pred ccccCCCCEEEEEEcCC----CCEEEEEeCCCEEEEEEccCCceeeeeeeee--cCCCCEEEEEEecC----CCceEEEE
Q 001163 413 LSSDYTASVNRVMWSPD----GTLFGVAYSKHIVHLYTYHGGDELRNHLEIE--AHVGSVNDLAFSYP----NKQLSVVT 482 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~spd----~~~las~s~dg~v~iwd~~~~~~~~~~~~l~--~h~~~V~~v~~s~~----~~~~~l~s 482 (1134)
+..+|.+.|++++|+|+ ..++++++.++.|++||+.+++.+....... .|...|.+++|+|+ +. +|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence 35689999999999984 5567777777799999999887665443332 37788999999999 45 7999
Q ss_pred EeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee---cCCCCCeeEEEE
Q 001163 483 CGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY---DAPGHSSTMMAY 559 (1134)
Q Consensus 483 ~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~ 559 (1134)
|+.|+.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+...+....+ ..+...|.+++|
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 999999999999999999999999999999999762 4489999999999999999988777776 567889999999
Q ss_pred CcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecC----------------------------CCCCceEEEEEcCCCC
Q 001163 560 SADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG----------------------------LGKRSVGVVQFDTTKN 611 (1134)
Q Consensus 560 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~----------------------------~~~~~v~~~~~~~~~~ 611 (1134)
+|+++++++++.++ .|++||+.+++....+.. |.. .|.+++|+ ++
T Consensus 170 ~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~--~~ 242 (366)
T 3k26_A 170 DLLGEKIMSCGMDH----SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN-YVDCVRWL--GD 242 (366)
T ss_dssp CTTSSEEEEEETTS----CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS-CCCEEEEE--TT
T ss_pred CCCCCEEEEecCCC----CEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc-eEEEEEEc--CC
Confidence 99999999998754 499999998765443332 554 89999998 67
Q ss_pred EEEEEeCCCeEEEEEcCCCce--------------eEEEecCCCCCCcceEEEcCC--CcEEEEEECCCcEEEEEccCC
Q 001163 612 RFLAAGDEFMIKFWDMDNVNL--------------LASIDADGGLQASPCIRFNKE--GILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 612 ~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~sp~--~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
++++++.||.|++||+.++.. +..+..+ ...|.+++|+|+ +++|++++.||.|++|++.++
T Consensus 243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred EEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 999999999999999988754 5555544 668999999999 999999999999999998776
No 84
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.3e-31 Score=302.19 Aligned_cols=247 Identities=15% Similarity=0.159 Sum_probs=215.6
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 493 (1134)
+..|.++|++++|+|++++||+|+.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 34589999999999999999999999999999999886 222336889999999999999999 899999999999999
Q ss_pred CCCCceeEE--ecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCc----eeeecCCCCCeeEEEECcCCCEEE
Q 001163 494 AVTGTKQYI--FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS----RVDYDAPGHSSTMMAYSADGARLF 567 (1134)
Q Consensus 494 ~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~ 567 (1134)
+.+++.... +..|...|.+++|++ ++.+|++++.|+.|++||++.... ......+...|.+++|+|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred CCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 998875544 467999999999965 458999999999999999988763 222355677999999999999999
Q ss_pred EEecCCCCCeEEEEEeC------------------CCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001163 568 SCGTNKEGESYLVEWNE------------------SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 629 (1134)
Q Consensus 568 ~~~~~~~~~~~i~~wd~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 629 (1134)
+++.++ .|++||+ ..++.+..+..|.. .+.+++|+|++++|++++.||.|++||+.+
T Consensus 159 ~~~~dg----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 159 AGSCDF----KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp EEETTS----CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred EEcCCC----CEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 998654 5999995 46788888887776 899999999999999999999999999999
Q ss_pred CceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163 630 VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (1134)
Q Consensus 630 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 673 (1134)
++.+..+..+ ...+.+++|+|++.+++++ .|+.|++|++.+
T Consensus 234 ~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 234 KMAVATLASE--TLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TTEEEEEECS--SCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CceeEEEccC--CCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 9999998865 5689999999999988877 999999999987
No 85
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.1e-31 Score=301.88 Aligned_cols=252 Identities=14% Similarity=0.198 Sum_probs=208.0
Q ss_pred ccccCCCCEEEEEEcCCCCEE-EEEeC---CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecC---CCceEEEEEeC
Q 001163 413 LSSDYTASVNRVMWSPDGTLF-GVAYS---KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP---NKQLSVVTCGE 485 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~spd~~~l-as~s~---dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~---~~~~~l~s~s~ 485 (1134)
++.+|...|.+++|+|++..+ ++|+. |+.|+|||+.+++.... ...+|...|.+++|+|+ +. +|++++.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~~ 88 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGDF 88 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEET
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEecC
Confidence 457899999999999999655 55665 99999999998875432 23479999999999998 56 7999999
Q ss_pred CCeEEEEECCCCc-eeEEecCCCcCEEEEeccc----cCCccEEEEecCCCcEEEEecCCCC-ceeeecCCCC----Cee
Q 001163 486 DRVIKVWDAVTGT-KQYIFEGHESPVYSICPHH----KENIQFIFSTATDGKIKAWLYDNLG-SRVDYDAPGH----SST 555 (1134)
Q Consensus 486 d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~----~v~ 555 (1134)
|+.|++||+.+++ .+..+.+|...|.+++|.+ ++++.+|++++.|+.|++||+.... ....+..+.. .+.
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence 9999999999998 8899999999999997643 5667899999999999999999876 4555544433 788
Q ss_pred EEE----ECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcC---CCCEEEEEeCCCeEEEEEcC
Q 001163 556 MMA----YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT---TKNRFLAAGDEFMIKFWDMD 628 (1134)
Q Consensus 556 ~~~----~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~ 628 (1134)
+++ |+|+++++++++.++ .|++||+++++.... ..+.. .+.+++|+| +++++++++.||.|++||++
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~-~~~~~-~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 242 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYDNG----DIKLFDLRNMALRWE-TNIKN-GVCSLEFDRKDISMNKLVATSLEGKFHVFDMR 242 (357)
T ss_dssp EEEEECCCC-CCCEEEEEETTS----EEEEEETTTTEEEEE-EECSS-CEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred EEEEEeccCCCCCEEEEEccCC----eEEEEECccCceeee-cCCCC-ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence 888 789999999997643 699999999987554 33443 899999999 89999999999999999998
Q ss_pred CCceeEEEe---cCCCCCCcceEEEcCCCc-EEEEEECCCcEEEEEccCC
Q 001163 629 NVNLLASID---ADGGLQASPCIRFNKEGI-LLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 629 ~~~~~~~~~---~~~~~~~v~~v~~sp~~~-~l~~~~~dg~i~iw~~~~~ 674 (1134)
+++.+..+. ..++...|.+++|+|++. ++++++.||.|++|++..+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 243 TQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp EEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred CCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence 877655443 124477899999999998 8999999999999999876
No 86
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-32 Score=308.76 Aligned_cols=315 Identities=11% Similarity=0.048 Sum_probs=240.2
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
-...|.+|+|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|+|
T Consensus 14 ~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg---- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE---- 64 (588)
T ss_dssp CSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC----
T ss_pred hhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC----
Confidence 357899999999999 679999999999 6444432 46899999999999999
Q ss_pred EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCc-----C
Q 001163 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES-----P 509 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~-----~ 509 (1134)
.++.+.+|+.+....+ .+ .|...|.+++|||+|+ .|++++.||.|++||..+ ++..+. |.. .
T Consensus 65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~s 131 (588)
T 2j04_A 65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRT 131 (588)
T ss_dssp ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTC
T ss_pred ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccccc
Confidence 4555555554322211 12 5688999999999999 799999999999999543 677777 665 4
Q ss_pred EEEEeccccCCccEEEEecCCCcEEEEecCCCCc-------eeee----cCCCCCeeEEEECcCCCEEEEEecCCCCCeE
Q 001163 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-------RVDY----DAPGHSSTMMAYSADGARLFSCGTNKEGESY 578 (1134)
Q Consensus 510 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------~~~~----~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 578 (1134)
|.+++|+| ||++|++|+.||+|++||+..+.. ...+ .+|...|.+++|+||| +++++.| ..
T Consensus 132 v~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D----~t 203 (588)
T 2j04_A 132 YHCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSN----NS 203 (588)
T ss_dssp EEEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETT----CC
T ss_pred EEEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCC----Ce
Confidence 99999965 569999999999999999987643 2333 4566799999999999 6666654 35
Q ss_pred EEEEeCCCCee---EEEec-CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEE--cC
Q 001163 579 LVEWNESEGAV---KRTYH-GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF--NK 652 (1134)
Q Consensus 579 i~~wd~~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~--sp 652 (1134)
+++||+.++.. ..++. +|. ..|.+++|+ ++.+++++ ++.|++||..+++...... +|...+..++| +|
T Consensus 204 VrlWd~~~~~~~~~~~tL~~~h~-~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~--gh~~~V~~va~~~s~ 277 (588)
T 2j04_A 204 VFSMTVSASSHQPVSRMIQNASR-RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT--GSLENFHIIPLNHEK 277 (588)
T ss_dssp EEEECCCSSSSCCCEEEEECCCS-SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC--SCCSCCCEEEETTCS
T ss_pred EEEEECCCCccccceeeeccccc-CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc--CCCceEEEEEeeeCC
Confidence 99999988873 35664 554 489999999 58898887 6999999999887744443 35778999999 99
Q ss_pred CCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCC
Q 001163 653 EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND 732 (1134)
Q Consensus 653 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 732 (1134)
++..+++++.||+ ++|.... +. ++
T Consensus 278 d~~~La~a~edG~-klw~~d~----~~--------------------------------~s------------------- 301 (588)
T 2j04_A 278 ESTILLMSNKTSY-KVLLEDE----LH--------------------------------VT------------------- 301 (588)
T ss_dssp SCEEEEECSSCEE-EEEESSS----EE--------------------------------EE-------------------
T ss_pred CCCEEEEEcCCCC-EEEeecc----EE--------------------------------EC-------------------
Confidence 9999999999999 9998761 11 11
Q ss_pred CccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeecc
Q 001163 733 SRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS 796 (1134)
Q Consensus 733 ~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 796 (1134)
+++..+++ .|+++++|+..... ...+ .+...|.+++|+|||+.+++++.
T Consensus 302 ----pd~~l~a~--~d~~v~lW~~~g~~----l~~~-----~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 302 ----ADNIIAPY--LEKKFKKWSTIWNE----FNNY-----ETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ----CCCSSHHH--HHHHHHHTTTTTTS----SSSS-----CCEEEEEEEEECTTSSEEEEEEE
T ss_pred ----CCceEEEE--cCCEEEEEECCCCc----eeee-----ccceEEEEEEECCCCCEEEEEEe
Confidence 11222233 48999999875422 1111 14677999999999999888774
No 87
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3e-31 Score=291.13 Aligned_cols=247 Identities=13% Similarity=0.188 Sum_probs=205.4
Q ss_pred ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCc--cceeeeceeeeeccccCccccccccccCCCCEEEEEEcC--C
Q 001163 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSR--ERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--D 429 (1134)
Q Consensus 354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d 429 (1134)
+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++ +.+. .+.+|.+.|.+++|+| +
T Consensus 7 ~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~~~~ 66 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPKF 66 (297)
T ss_dssp SCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECCGGG
T ss_pred CCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecCCCc
Confidence 4899999999999999 5689999999999999754 2222 2689999999999987 4
Q ss_pred CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecC--CCceEEEEEeCCCeEEEEECCCCce--eEEecC
Q 001163 430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIKVWDAVTGTK--QYIFEG 505 (1134)
Q Consensus 430 ~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~iwd~~~~~~--~~~~~~ 505 (1134)
+++||+|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|++|++||+.++.. ...+.+
T Consensus 67 g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 143 (297)
T 2pm7_B 67 GTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIIIDA 143 (297)
T ss_dssp CSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEEEC
T ss_pred CCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeeeec
Confidence 899999999999999999987522 22357789999999999998 66 899999999999999987642 466789
Q ss_pred CCcCEEEEeccccC-----------CccEEEEecCCCcEEEEecCCCC----ceeeecCCCCCeeEEEECcCC---CEEE
Q 001163 506 HESPVYSICPHHKE-----------NIQFIFSTATDGKIKAWLYDNLG----SRVDYDAPGHSSTMMAYSADG---ARLF 567 (1134)
Q Consensus 506 h~~~v~~~~~~~~~-----------~~~~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~~~---~~l~ 567 (1134)
|...|.+++|++.. ++.+|++|+.|++|++||++... ....+..|...|.+++|+|++ ++|+
T Consensus 144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~la 223 (297)
T 2pm7_B 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMA 223 (297)
T ss_dssp CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEE
Confidence 99999999998752 24799999999999999998765 344577888899999999985 7899
Q ss_pred EEecCCCCCeEEEEEeCCCCe---eEEEe--cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 001163 568 SCGTNKEGESYLVEWNESEGA---VKRTY--HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD 628 (1134)
Q Consensus 568 ~~~~~~~~~~~i~~wd~~~~~---~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 628 (1134)
+++.|+ .|++||+.++. ....+ ..+. ..+.+++|+|++++|++++.||.|++|+..
T Consensus 224 s~s~D~----~v~iWd~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 224 SVSQDR----TCIIWTQDNEQGPWKKTLLKEEKFP-DVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEETTS----CEEEEEESSTTSCCEEEESSSSCCS-SCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEECCC----cEEEEEeCCCCCccceeeeecccCC-CcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 998754 59999987643 12233 3344 389999999999999999999999999976
No 88
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2e-30 Score=288.57 Aligned_cols=282 Identities=14% Similarity=0.251 Sum_probs=234.7
Q ss_pred eeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeC
Q 001163 359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS 438 (1134)
Q Consensus 359 V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~ 438 (1134)
.++|+||+++ +||+|. |++|+|||+.+++.+.... +.+|...|++++|+|++++||+|+.
T Consensus 28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~~-----------------~~~~~~~V~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCeEEEEEECCCCCEEEEEEC
Confidence 4689999986 667764 8999999999998765311 4678999999999999999999999
Q ss_pred CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC-ceeEEecCCCcCEEEEeccc
Q 001163 439 KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSICPHH 517 (1134)
Q Consensus 439 dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~ 517 (1134)
||+|++||+.+++.+. .+.+|...+.++.+ ++. .+++++.++.+++|+..++ ..+..+.+|...+..+.+.+
T Consensus 88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~--~~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSW--NSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp TSEEEEEETTTTEEEE---EEECCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred CCcEEEeecCCceeEE---EecCccceEEEeec--CCC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 9999999999998766 67899998887665 456 7999999999999998876 45677889999999998865
Q ss_pred cCCccEEEEecCCCcEEEEecCCCCce----eeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEe
Q 001163 518 KENIQFIFSTATDGKIKAWLYDNLGSR----VDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY 593 (1134)
Q Consensus 518 ~~~~~~l~s~s~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 593 (1134)
++.++++++.|+.|++||+.+.+.. .....+...|..++++|++..++..... ..+..|++||..........
T Consensus 161 --~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 161 --DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG-TSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp --TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEEC-TTTCEEEEEETTTCCEEEEE
T ss_pred --CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEec-CCCCEEEEEecccccccccc
Confidence 4489999999999999999875533 3344566689999999987655433221 33567999999988877766
Q ss_pred cCCCCCceEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163 594 HGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (1134)
Q Consensus 594 ~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 671 (1134)
.... .+..+.|+++++.+++++ .|+.|++||+.+++++..+.+| ...|++++|+|+|++|++++.||+|+|||+
T Consensus 238 ~~~~--~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH--~~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 238 DAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp ECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ccee--eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 5443 688999999999988765 7999999999999999999865 779999999999999999999999999998
Q ss_pred cCC
Q 001163 672 ADG 674 (1134)
Q Consensus 672 ~~~ 674 (1134)
.+.
T Consensus 314 ~~~ 316 (318)
T 4ggc_A 314 FEL 316 (318)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 89
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-30 Score=290.20 Aligned_cols=240 Identities=16% Similarity=0.234 Sum_probs=211.4
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 492 (1134)
.+.+|.+.|++++| |++++|++|+.||.|++||+.+++... .+..|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGV 86 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEE
Confidence 37899999999999 999999999999999999998877554 5778999999999999999 89999999999999
Q ss_pred ECCCC---ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECc-CCCEEEE
Q 001163 493 DAVTG---TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA-DGARLFS 568 (1134)
Q Consensus 493 d~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~ 568 (1134)
++... +.+..+.+|...|.+++| + +.++++++.|+.|++|| .......+..+...+.++++.| +++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~--~--~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF--Q--DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE--E--TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEe--c--CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 98754 567788999999999998 2 36899999999999999 4556667778888999999988 8999999
Q ss_pred EecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceE
Q 001163 569 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCI 648 (1134)
Q Consensus 569 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 648 (1134)
++.++ .|++|| .++....+...+...+.+++|+|++. +++++.||.|++||+.+++.+..+..+ ...|.++
T Consensus 161 ~~~d~----~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~~ 231 (313)
T 3odt_A 161 ASADK----TIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH--ESFVYCI 231 (313)
T ss_dssp EETTS----CEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEE
T ss_pred EECCC----CEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC--CceEEEE
Confidence 98654 499999 56777788875555899999999987 999999999999999999999998855 6689999
Q ss_pred EEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 649 RFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 649 ~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
+|+|++ .+++++.||.|++||+.++
T Consensus 232 ~~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 232 KLLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp EECTTS-CEEEEETTSEEEEECTTTC
T ss_pred EEecCC-CEEEEecCCEEEEEECCCC
Confidence 999999 6889999999999999877
No 90
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-33 Score=312.96 Aligned_cols=330 Identities=10% Similarity=0.067 Sum_probs=247.2
Q ss_pred CCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 001163 551 GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV 630 (1134)
Q Consensus 551 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 630 (1134)
...|.+++|+|||+++++++.| .+|+ |...++.+ .+|.. .+..++|+|+| .++.+.+|+.+..
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D----~TV~--d~~~~~~l---~gh~~-~v~~V~FsPdg-------~~~~~~~~~~~~~ 77 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPD----ISIG--QPKYAKDI---NCNSK-NLFHVKEFPLE-------FENKLDFELAQQN 77 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSS----EEEE--EECCCSCC---SSBGG-GTEEEEEECCC-------CCCTTTTSCCCSS
T ss_pred hccEEEEEECCCCCEEEEEcCC----ceee--ccccccee---cCCCc-cEEEEEECCCC-------CcceEEEEeCCCc
Confidence 3578999999999999999764 4577 75555444 67776 89999999998 4565555554322
Q ss_pred ceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccccccccccccc
Q 001163 631 NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANA 710 (1134)
Q Consensus 631 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1134)
. .+.. .+...|.+++|+|+|.+||+++.||.+++|+... .+..+. |...
T Consensus 78 ~---~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~----------------------- 126 (588)
T 2j04_A 78 G---LLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGN----------------------- 126 (588)
T ss_dssp C---SSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEEECC-CSSC-----------------------
T ss_pred e---Eeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCc-----------------------
Confidence 2 2221 2256899999999999999999999999999533 332222 1100
Q ss_pred ccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCce
Q 001163 711 NVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLA 790 (1134)
Q Consensus 711 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~ 790 (1134)
.....|.+++|||||++
T Consensus 127 ---------------------------------------------------------------~~~~sv~svafSPDG~~ 143 (588)
T 2j04_A 127 ---------------------------------------------------------------LSSRTYHCFEWNPIESS 143 (588)
T ss_dssp ---------------------------------------------------------------STTTCEEEEEECSSSSC
T ss_pred ---------------------------------------------------------------cccccEEEEEEcCCCCE
Confidence 01345889999999999
Q ss_pred eeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEE
Q 001163 791 ILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFN 870 (1134)
Q Consensus 791 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd 870 (1134)
|++++.||.|+||++........... .-..+..... +|...|.+++|+||| +++++.|++|++||
T Consensus 144 LAsgs~DGtVkIWd~~~~~l~~~~~i------------~l~ti~~~~~--gh~~~V~sVawSPdg-Laass~D~tVrlWd 208 (588)
T 2j04_A 144 IVVGNEDGELQFFSIRKNSENTPEFY------------FESSIRLSDA--GSKDWVTHIVWYEDV-LVAALSNNSVFSMT 208 (588)
T ss_dssp EEEEETTSEEEEEECCCCTTTCCCCE------------EEEEEECSCT--TCCCCEEEEEEETTE-EEEEETTCCEEEEC
T ss_pred EEEEcCCCEEEEEECCCCccccccce------------eeeeeecccc--cccccEEEEEEcCCc-EEEEeCCCeEEEEE
Confidence 99999999999998764211000000 0000111113 388999999999999 54444599999999
Q ss_pred ccCCeE---EEEe-cCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEE--eeCCCEEEE
Q 001163 871 MMTFKT---MTTF-MPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAF--SNTLNVLVS 944 (1134)
Q Consensus 871 ~~~~~~---~~~~-~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~--s~d~~~l~s 944 (1134)
+.++.. ..++ .+|...|.+++|+ +++||+++ +++|++||+.+++......+|.+.|..++| +||+..|++
T Consensus 209 ~~~~~~~~~~~tL~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~ 284 (588)
T 2j04_A 209 VSASSHQPVSRMIQNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLM 284 (588)
T ss_dssp CCSSSSCCCEEEEECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEE
T ss_pred CCCCccccceeeecccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEE
Confidence 988773 3566 4788899999998 37898887 699999999988874444489999999999 999999999
Q ss_pred EeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEE
Q 001163 945 SGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPIT 1024 (1134)
Q Consensus 945 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~ 1024 (1134)
++.||+ ++|..+. ++|+||+..++.. |+++++|+..... +..+. + ...|.
T Consensus 285 a~edG~-klw~~d~------------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~~--~-~~~I~ 334 (588)
T 2j04_A 285 SNKTSY-KVLLEDE------------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNNYE--T-TLVIH 334 (588)
T ss_dssp CSSCEE-EEEESSS------------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSSSC--C-EEEEE
T ss_pred EcCCCC-EEEeecc------------------------EEECCCceEEEEc-CCEEEEEECCCCc-eeeec--c-ceEEE
Confidence 999999 9999762 5699999887775 9999999986544 33332 3 77899
Q ss_pred EEEEccCCCEEEEEec
Q 001163 1025 HATYSCDSQSIYVAFE 1040 (1134)
Q Consensus 1025 ~~~~s~dg~~l~s~s~ 1040 (1134)
+++|||||+.+|+++.
T Consensus 335 ~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 335 GISLSPDGYSIAIVYD 350 (588)
T ss_dssp EEEECTTSSEEEEEEE
T ss_pred EEEECCCCCEEEEEEe
Confidence 9999999999998873
No 91
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.1e-31 Score=305.60 Aligned_cols=366 Identities=13% Similarity=0.162 Sum_probs=253.6
Q ss_pred CCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec-------------CCC
Q 001163 485 EDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-------------APG 551 (1134)
Q Consensus 485 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-------------~~~ 551 (1134)
.++.+++|++..++....+.+|.+.|.+++|++. ++.+|++++.||.|++||+........+. .+.
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPV-EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTT-TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred ccCcceeeccccCcceeeeeccCCcEEEEEEecC-CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 3456788998888888999999999999999751 45899999999999999998876655443 477
Q ss_pred CCeeEEEECc-CCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCC---CEEEEEeCCCeEEEEEc
Q 001163 552 HSSTMMAYSA-DGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK---NRFLAAGDEFMIKFWDM 627 (1134)
Q Consensus 552 ~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~ 627 (1134)
..|.+++|+| +++++++++.+ +.|++||+.+++....+... ..+..+.+++.+ .++++++.||.|++||+
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 173 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFD----KTLKVWDTNTLQTADVFNFE--ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL 173 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETT----SEEEEEETTTTEEEEEEECS--SCEEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred CcEEEEEEccCCCcEEEEEeCC----CeEEEeeCCCCccceeccCC--CceeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence 7999999999 77889988764 46999999999988888743 278889998854 49999999999999999
Q ss_pred CCCceeEEEecCCCCCCcceEEEcCCCc-EEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccccccccc
Q 001163 628 DNVNLLASIDADGGLQASPCIRFNKEGI-LLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFG 706 (1134)
Q Consensus 628 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (1134)
.+++.+..+..+ ...|.+++|+|++. ++++++.||.|++||+.++......+..+.....
T Consensus 174 ~~~~~~~~~~~~--~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----------------- 234 (408)
T 4a11_B 174 KSGSCSHILQGH--RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS----------------- 234 (408)
T ss_dssp SSSCCCEEECCC--CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC-----------------
T ss_pred CCcceeeeecCC--CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc-----------------
Confidence 999999888755 66899999999998 6899999999999999877544444432211100
Q ss_pred ccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEec
Q 001163 707 SANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTN 786 (1134)
Q Consensus 707 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 786 (1134)
.........|...|.+++|+|
T Consensus 235 -----------------------------------------------------------~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 235 -----------------------------------------------------------QAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp -----------------------------------------------------------CCTTTSSCSCSSCEEEEEECT
T ss_pred -----------------------------------------------------------eeeccccccccCceeEEEEcC
Confidence 000111124788999999999
Q ss_pred CCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeE
Q 001163 787 SGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKI 866 (1134)
Q Consensus 787 dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i 866 (1134)
+++++++++.||.+++|++........ ..+.... . ..............+.+++++.++.|
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~--------------~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~i 316 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTLV--------------NYGKVCN----N-SKKGLKFTVSCGCSSEFVFVPYGSTI 316 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCCC--------------CCCCCCC----C-CSSCCCCEECCSSSSCEEEEEETTEE
T ss_pred CCCEEEEecCCCeEEEEECCCCcccee--------------ccccccc----c-ccccceeEEecCCCceEEEEecCCEE
Confidence 999999999999999998874321000 0000000 0 01122223333444555656569999
Q ss_pred EEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEee-CCCEEEEE
Q 001163 867 SLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSN-TLNVLVSS 945 (1134)
Q Consensus 867 ~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~-d~~~l~s~ 945 (1134)
++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+.....+... ..+.+ ....+.++
T Consensus 317 ~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 392 (408)
T 4a11_B 317 AVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSS 392 (408)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC------------------------------
T ss_pred EEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeeccc
Confidence 9999999999999999999999999999 8999999999999999999998877655443322 22332 34455677
Q ss_pred eCCCcEEEEECCC
Q 001163 946 GADSQLCVWSTDG 958 (1134)
Q Consensus 946 s~Dg~i~iwd~~~ 958 (1134)
+.|+.+++|+...
T Consensus 393 ~~~~~~~~W~~~~ 405 (408)
T 4a11_B 393 DEEGGTSAWSHPQ 405 (408)
T ss_dssp -------------
T ss_pred CccCceeecCCcc
Confidence 8899999998654
No 92
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.1e-31 Score=310.86 Aligned_cols=300 Identities=13% Similarity=0.184 Sum_probs=231.3
Q ss_pred eecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCC------------CC
Q 001163 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT------------AS 420 (1134)
Q Consensus 353 ~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~ 420 (1134)
+.+.+.|++++|+|+|+ +||+|+.||.|+|||+.+++....... ........+.+|. ..
T Consensus 25 ~~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSR--------GEYNVYSTFQSHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp CCGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCC--------CCEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred ccccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccc--------cceeEecccccccccccccccccccCc
Confidence 45678999999999999 568999999999999988763110000 0000011256787 88
Q ss_pred EEEEEEcCCC--CEEEEEeCCCEEEEEEccCCceee------------------------------------eeee-eec
Q 001163 421 VNRVMWSPDG--TLFGVAYSKHIVHLYTYHGGDELR------------------------------------NHLE-IEA 461 (1134)
Q Consensus 421 V~~l~~spd~--~~las~s~dg~v~iwd~~~~~~~~------------------------------------~~~~-l~~ 461 (1134)
|++++|+|++ .+|++++.|+.|++||+.++.... .... +.+
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 9999999998 899999999999999998754310 0011 368
Q ss_pred CCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC-CceeE-------EecCCCcCEEEEeccccCCccEEEEecCCCcE
Q 001163 462 HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT-GTKQY-------IFEGHESPVYSICPHHKENIQFIFSTATDGKI 533 (1134)
Q Consensus 462 h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~-------~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i 533 (1134)
|...|.+++|+|+++ +|++| .|+.|++||+.+ ++.+. .+.+|...|.+++|+++.. .+|++++.||.|
T Consensus 176 h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i 251 (447)
T 3dw8_B 176 HTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC-NTFVYSSSKGTI 251 (447)
T ss_dssp CSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT-TEEEEEETTSCE
T ss_pred CCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC-cEEEEEeCCCeE
Confidence 999999999999999 78888 799999999984 44444 3668999999999965431 799999999999
Q ss_pred EEEecCCCCc----eeeecCCCC------------CeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC-CeeEEEecCC
Q 001163 534 KAWLYDNLGS----RVDYDAPGH------------SSTMMAYSADGARLFSCGTNKEGESYLVEWNESE-GAVKRTYHGL 596 (1134)
Q Consensus 534 ~vwd~~~~~~----~~~~~~~~~------------~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~ 596 (1134)
++||++.... ...+..+.. .|.+++|+|++++|++++. +.|++||+.+ ++.+..+.+|
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-----LSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-----SEEEEEETTCCSSCSCCEESC
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-----CeEEEEeCCCCccccceeecc
Confidence 9999998775 566666665 8999999999999999864 4699999997 8888888877
Q ss_pred CCC-----------c---eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEec------------------------
Q 001163 597 GKR-----------S---VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA------------------------ 638 (1134)
Q Consensus 597 ~~~-----------~---v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------------------ 638 (1134)
... . +..++|+|++++|++++.||.|++||+.+++.+.....
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 420 0 22489999999999999999999999999887642211
Q ss_pred ------CCCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163 639 ------DGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (1134)
Q Consensus 639 ------~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 671 (1134)
......|..++|+|++.+||+++.++ +++|..
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 02234678899999999999998775 777764
No 93
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.2e-30 Score=302.15 Aligned_cols=291 Identities=17% Similarity=0.256 Sum_probs=237.9
Q ss_pred cCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEE
Q 001163 770 LPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCF 849 (1134)
Q Consensus 770 ~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v 849 (1134)
.|........+.|+||+++ .|+ ++.|++|+|||.. +|++... +...+|...|+++
T Consensus 99 ap~~~~d~y~~~l~wS~~n-~lA-vgld~tV~lWd~~----------------------tg~~~~~-~~~~~~~~~V~sv 153 (420)
T 4gga_A 99 APEIRNDYYLNLVDWSSGN-VLA-VALDNSVYLWSAS----------------------SGDILQL-LQMEQPGEYISSV 153 (420)
T ss_dssp CTTCCCCTTCBCEEECTTS-EEE-EEETTEEEEEETT----------------------TCCEEEE-EECCSTTCCEEEE
T ss_pred CCCCcccccceeEEECCCC-EEE-EEeCCEEEEEECC----------------------CCCEEEE-EEecCCCCcEEEE
Confidence 3333344567789999765 444 4569999999654 4433221 1122388899999
Q ss_pred EEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccc-eEEEeccCcc
Q 001163 850 ALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD-EVKTKLKGHQ 927 (1134)
Q Consensus 850 ~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~-~~~~~l~~h~ 927 (1134)
+|+|||++|++|+ ||+|+|||+.+++++..+.+|...+.+++++ +.+|++|+.|+.+++||.... ..+..+.+|.
T Consensus 154 ~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~ 230 (420)
T 4gga_A 154 AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHS 230 (420)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred EECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccc
Confidence 9999999999999 9999999999999999999999999998885 469999999999999998864 5567889999
Q ss_pred CceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEE-EEE---eeceEEEE
Q 001163 928 KRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHL-LAV---HETQIAIY 1003 (1134)
Q Consensus 928 ~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l-~~~---~d~~i~iw 1003 (1134)
..+..+.|+|++.++++++.|+.+++|+...++..... +.....+. ..|.+++|+|++..+ +++ .|++|++|
T Consensus 231 ~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~-~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iw 306 (420)
T 4gga_A 231 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP-LQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIW 306 (420)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCC-SEEECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEE
T ss_pred cceeeeeecCCCCeeeeeeccccceEEeecccccccee-eeeecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEE
Confidence 99999999999999999999999999999886643322 22233333 469999999976544 442 58999999
Q ss_pred eCCCcccceeeccCCCccCEEEEEEccCCCEEEEEe--cCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecC
Q 001163 1004 EAPKLECLKQFVPREASGPITHATYSCDSQSIYVAF--EEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNP 1081 (1134)
Q Consensus 1004 d~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p 1081 (1134)
|+.++++...+. +...+.++.|+++++.|++++ .|+.|+|||+.+++.+..+. ||.+.|+.+ +|+|
T Consensus 307 d~~t~~~~~~~~---~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~-------gH~~~V~~l--~~sp 374 (420)
T 4gga_A 307 NVCSGACLSAVD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GHTSRVLSL--TMSP 374 (420)
T ss_dssp ETTTTEEEEEEE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CCSSCEEEE--EECT
T ss_pred eCCccccceeec---cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc-------CCCCCEEEE--EEcC
Confidence 999999988876 356899999999999988765 78999999999999887765 789999888 7889
Q ss_pred CCCCEEEEEecCCcEEEEeCCCCC
Q 001163 1082 TDPNQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus 1082 ~~~~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
|+++|++|+.||+|+|||+.+.+
T Consensus 375 -dg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 375 -DGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp -TSSCEEEEETTTEEEEECCSCSS
T ss_pred -CCCEEEEEecCCeEEEEECCCCC
Confidence 79999999999999999997654
No 94
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.7e-31 Score=295.89 Aligned_cols=251 Identities=18% Similarity=0.291 Sum_probs=206.2
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecC--CCceEEEEEeCCCeEE
Q 001163 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIK 490 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~ 490 (1134)
++.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+++ ++ +|+||+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 36789999999999999999999999999999999987532 23368899999999999863 66 799999999999
Q ss_pred EEECCCC--ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCc---eeeecCCCCCeeEEEECcC---
Q 001163 491 VWDAVTG--TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS---RVDYDAPGHSSTMMAYSAD--- 562 (1134)
Q Consensus 491 iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~~--- 562 (1134)
+||+.++ +.+..+.+|...|.+++|+++.++.+|++++.|++|++||+..... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 9999987 4667888999999999998876678999999999999999986532 2334566778999999997
Q ss_pred --------------CCEEEEEecCCCCCeEEEEEeCCCC---eeEEEecCCCCCceEEEEEcCCC----CEEEEEeCCCe
Q 001163 563 --------------GARLFSCGTNKEGESYLVEWNESEG---AVKRTYHGLGKRSVGVVQFDTTK----NRFLAAGDEFM 621 (1134)
Q Consensus 563 --------------~~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~ 621 (1134)
+++|++++.|+ .|++||+..+ +.+..+.+|.. .|.+++|+|++ .+|++++.||+
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~----~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDN----LIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTS----BCCEEEECTTSCEEEEECCBCCSS-CEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred ccccccccccCccccceEEEecCCC----eEEEEEeCCCCccceeeecccCCC-ceEEEEecCCCCCCCceEEEEcCCCe
Confidence 46888887644 5999999755 46677888876 89999999986 88999999999
Q ss_pred EEEEEcCCCc----eeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163 622 IKFWDMDNVN----LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (1134)
Q Consensus 622 i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 673 (1134)
|++|++.+.. ....+..+ ...|.+++|+|++++|++++.||.|++|+...
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 9999987631 12233333 56899999999999999999999999999763
No 95
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=1.7e-31 Score=295.97 Aligned_cols=257 Identities=13% Similarity=0.143 Sum_probs=205.6
Q ss_pred CCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCe--EEEEecCCCCCeEEEEEcCC-CCcEEEEEeCCCcEEEEEccc
Q 001163 841 NPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK--TMTTFMPPPPAATFLAFHPQ-DNNIIAIGMEDSSIQIYNVRV 916 (1134)
Q Consensus 841 ~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~--~~~~~~~~~~~v~~l~~sp~-~~~~la~g~~dg~i~iwd~~~ 916 (1134)
+|...|.+++|+|+|++|++++ |++|+|||+.+++ .+..+.+|...|.+++|+++ ++++|++|+.|++|++||+.+
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN 90 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence 3999999999999999999999 9999999998764 56788999999999999862 478999999999999999998
Q ss_pred c--eEEEeccCccCceEEEEEeeC--CCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCC----
Q 001163 917 D--EVKTKLKGHQKRITGLAFSNT--LNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD---- 988 (1134)
Q Consensus 917 ~--~~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d---- 988 (1134)
+ +.+..+.+|...|.+++|+|+ +.+|++++.|++|++||+..+.. ........+|. ..+.+++|+|+
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~--~~~~~~~~~h~---~~v~~~~~~~~~~~~ 165 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ--WEVKKINNAHT---IGCNAVSWAPAVVPG 165 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC--EEECCBTTSSS---SCBCCCEECCCCCC-
T ss_pred CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC--cceeeeecccc---CCcceEEEccccCCc
Confidence 7 456778899999999999998 88999999999999999987431 11233444554 46889999998
Q ss_pred -------------CCEEEE-EeeceEEEEeCCCc---ccceeeccCCCccCEEEEEEccCC----CEEEEEecCCcEEEe
Q 001163 989 -------------QTHLLA-VHETQIAIYEAPKL---ECLKQFVPREASGPITHATYSCDS----QSIYVAFEEGSVGVL 1047 (1134)
Q Consensus 989 -------------g~~l~~-~~d~~i~iwd~~~~---~~~~~~~~~~h~~~v~~~~~s~dg----~~l~s~s~Dg~i~vw 1047 (1134)
+++|++ +.|++|++||+... +.+..+. +|...|.+++|+|++ .+|++++.|++|++|
T Consensus 166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~--~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw 243 (316)
T 3bg1_A 166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE--AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243 (316)
T ss_dssp -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB--CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred cccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc--cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence 467787 58999999999755 2344444 899999999999997 889999999999999
Q ss_pred ecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCCCCccCC
Q 001163 1048 TASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTS 1111 (1134)
Q Consensus 1048 d~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~~~~~~~ 1111 (1134)
++.+........ ....+|...|+.+ +|+| ++++|++++.||+|++|+... +++|...
T Consensus 244 ~~~~~~~~~~~~---~~~~~~~~~v~~v--~~sp-~g~~las~~~D~~v~lw~~~~-~g~~~~~ 300 (316)
T 3bg1_A 244 TCDDASSNTWSP---KLLHKFNDVVWHV--SWSI-TANILAVSGGDNKVTLWKESV-DGQWVCI 300 (316)
T ss_dssp ECSSTTCCCCBC---CEEEECSSCEEEE--EECT-TTCCEEEEESSSCEEEEEECT-TSCEEEE
T ss_pred EccCccccchhh---hhhhcCCCcEEEE--EEcC-CCCEEEEEcCCCeEEEEEECC-CCcEEEe
Confidence 997732100000 0112466777776 8899 689999999999999999863 3567643
No 96
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=2.9e-30 Score=300.73 Aligned_cols=272 Identities=21% Similarity=0.341 Sum_probs=236.6
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
|...|++++| +++ ++++|+.||.|++||+.+++.+.. +.+|.+.|.+++| ++++|+
T Consensus 132 ~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~~~~l~ 187 (435)
T 1p22_A 132 TSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVII 187 (435)
T ss_dssp SCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEEE
T ss_pred CCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--CCCEEE
Confidence 5678888887 677 568999999999999999876653 6789999999999 889999
Q ss_pred EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCcee---EEecCCCcCEE
Q 001163 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ---YIFEGHESPVY 511 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~---~~~~~h~~~v~ 511 (1134)
+|+.||.|++||+.+++.+. .+.+|...|.+++|+ +. .+++|+.|+.|++||+.+++.+ ..+.+|...|.
T Consensus 188 sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~--~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 260 (435)
T 1p22_A 188 TGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFN--NG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 260 (435)
T ss_dssp EEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECC--TT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred EEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEc--CC--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEE
Confidence 99999999999999998665 678999999999997 34 7999999999999999988766 67889999999
Q ss_pred EEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEE
Q 001163 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR 591 (1134)
Q Consensus 512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 591 (1134)
++++ ++.++++++.||.|++||+.+......+..+...+.++.+ +++++++++.++ .|++||+.+++.+.
T Consensus 261 ~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg----~i~iwd~~~~~~~~ 330 (435)
T 1p22_A 261 VVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDN----TIRLWDIECGACLR 330 (435)
T ss_dssp EEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTS----CEEEEETTTCCEEE
T ss_pred EEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCC----eEEEEECCCCCEEE
Confidence 9988 3479999999999999999999888888888889999988 578999998654 49999999999999
Q ss_pred EecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc---------eeEEEecCCCCCCcceEEEcCCCcEEEEEEC
Q 001163 592 TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN---------LLASIDADGGLQASPCIRFNKEGILLAVSTN 662 (1134)
Q Consensus 592 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~ 662 (1134)
.+.+|.. .+.+++| ++.++++|+.||.|++||+.++. .+..+..| ...|.+++| ++.+|++++.
T Consensus 331 ~~~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~~~~l~s~s~ 403 (435)
T 1p22_A 331 VLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQF--DEFQIVSSSH 403 (435)
T ss_dssp EECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEE--CSSCEEECCS
T ss_pred EEeCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC--CCCeEEEEe--CCCEEEEEeC
Confidence 9999876 8988888 78899999999999999997766 67777654 678999999 6889999999
Q ss_pred CCcEEEEEccCC
Q 001163 663 DNGIKILANADG 674 (1134)
Q Consensus 663 dg~i~iw~~~~~ 674 (1134)
||.|++||+.+.
T Consensus 404 Dg~i~iwd~~~~ 415 (435)
T 1p22_A 404 DDTILIWDFLND 415 (435)
T ss_dssp SSEEEEEC----
T ss_pred CCEEEEEECCCC
Confidence 999999999876
No 97
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=1.5e-30 Score=299.80 Aligned_cols=296 Identities=15% Similarity=0.203 Sum_probs=241.6
Q ss_pred CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC-CCCEEEEE
Q 001163 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTLFGVA 436 (1134)
Q Consensus 358 ~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~las~ 436 (1134)
....++++|+...++++|+.||.|+|||+........ ....+.+|.+.|++++|+| ++++||+|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s~ 100 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIASG 100 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEEE
Confidence 3446899999887777899999999999965432210 1113678999999999999 99999999
Q ss_pred eCCCEEEEEEccCCcee----eeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe--cCCCcCE
Q 001163 437 YSKHIVHLYTYHGGDEL----RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF--EGHESPV 510 (1134)
Q Consensus 437 s~dg~v~iwd~~~~~~~----~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~~h~~~v 510 (1134)
+.||.|+|||+.++... .....+.+|...|.+++|+|++.. +|++++.|+.|++||+.+++.+..+ .+|...|
T Consensus 101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 179 (402)
T 2aq5_A 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI 179 (402)
T ss_dssp ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence 99999999999987421 223368899999999999999844 7999999999999999999999999 8899999
Q ss_pred EEEeccccCCccEEEEecCCCcEEEEecCCCCceeee-cCCCCC-eeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe
Q 001163 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-DAPGHS-STMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 588 (1134)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 588 (1134)
.+++|++ ++.+|++++.|+.|++||+++......+ ..+... +..+.|+|++++++++.. +..++.|++||+.+++
T Consensus 180 ~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 180 YSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHLE 256 (402)
T ss_dssp EEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBCS
T ss_pred EEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCcccc
Confidence 9999976 5589999999999999999988777776 556554 899999999998888731 2236679999999875
Q ss_pred e-EEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCce-eEEEecCCCCCCcceEEEcCCCcEEEEEECCCc
Q 001163 589 V-KRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNL-LASIDADGGLQASPCIRFNKEGILLAVSTNDNG 665 (1134)
Q Consensus 589 ~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~ 665 (1134)
. ...........+..++|+|+++++++++ .||.|++||+.+++. +..+..+.+...+.+++|+|++.++++ .++.
T Consensus 257 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~ 334 (402)
T 2aq5_A 257 EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEI 334 (402)
T ss_dssp SCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEE
T ss_pred CCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--ccee
Confidence 4 3344333334789999999999997655 799999999999885 666665555678999999999988875 5679
Q ss_pred EEEEEccCC
Q 001163 666 IKILANADG 674 (1134)
Q Consensus 666 i~iw~~~~~ 674 (1134)
+++|++.++
T Consensus 335 ~~~~~l~~~ 343 (402)
T 2aq5_A 335 ARFYKLHER 343 (402)
T ss_dssp EEEEEEETT
T ss_pred EEEEEcCCC
Confidence 999999886
No 98
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.98 E-value=5.2e-30 Score=294.98 Aligned_cols=284 Identities=16% Similarity=0.185 Sum_probs=237.4
Q ss_pred cCCCC--EEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163 416 DYTAS--VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1134)
Q Consensus 416 ~h~~~--V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 493 (1134)
+|... +.+++|+ +..+++++.|+.|++||+.+++..... ...|...|.+++|+|+++ +|++|+.||.|++||
T Consensus 89 ~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 89 GIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDIYD 162 (401)
T ss_dssp TCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEEEE
T ss_pred CCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEEEE
Confidence 45554 4456665 466888999999999999998865422 223899999999999999 899999999999999
Q ss_pred CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCC-CCceeeecCCCCCeeEEEECcCCCEEEEEecC
Q 001163 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN-LGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572 (1134)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 572 (1134)
+.+++.+..+.+|...|.+++|+ + .++++++.||.|++||++. ......+..+...|.+++|+|+++++++++.+
T Consensus 163 ~~~~~~~~~~~~~~~~v~~~~~~--~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 238 (401)
T 4aez_A 163 VESQTKLRTMAGHQARVGCLSWN--R--HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND 238 (401)
T ss_dssp TTTCCEEEEECCCSSCEEEEEEE--T--TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CcCCeEEEEecCCCCceEEEEEC--C--CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC
Confidence 99999999999999999999983 3 6899999999999999984 45566677888899999999999999999875
Q ss_pred CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCC-EEEEEe--CCCeEEEEEcCCCceeEEEecCCCCCCcceEE
Q 001163 573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAG--DEFMIKFWDMDNVNLLASIDADGGLQASPCIR 649 (1134)
Q Consensus 573 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 649 (1134)
+ .|++||+.+++.+..+..|.. .+.+++|+|++. .+++++ .|+.|++||+.+++.+..+.. ...+.+++
T Consensus 239 ~----~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~---~~~v~~~~ 310 (401)
T 4aez_A 239 N----VVQIWDARSSIPKFTKTNHNA-AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA---GSQVTSLI 310 (401)
T ss_dssp S----CEEEEETTCSSEEEEECCCSS-CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC---SSCEEEEE
T ss_pred C----eEEEccCCCCCccEEecCCcc-eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC---CCcEEEEE
Confidence 4 499999999999999988876 899999999775 555554 799999999999999988864 35799999
Q ss_pred EcCCCcEEEEEE--CCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCccccccc
Q 001163 650 FNKEGILLAVST--NDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMV 727 (1134)
Q Consensus 650 ~sp~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 727 (1134)
|+|+++++++++ .||.|++|++.++. .....
T Consensus 311 ~s~~~~~l~~~~g~~dg~i~v~~~~~~~-~~~~~---------------------------------------------- 343 (401)
T 4aez_A 311 WSPHSKEIMSTHGFPDNNLSIWSYSSSG-LTKQV---------------------------------------------- 343 (401)
T ss_dssp ECSSSSEEEEEECTTTCEEEEEEEETTE-EEEEE----------------------------------------------
T ss_pred ECCCCCeEEEEeecCCCcEEEEecCCcc-ceeEE----------------------------------------------
Confidence 999999999954 89999999987751 11111
Q ss_pred CCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCC
Q 001163 728 GMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPR 807 (1134)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~ 807 (1134)
.+ .+|...|.+++|+|+|++|++++.||.+++|++..
T Consensus 344 ---------------------------~~----------------~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 344 ---------------------------DI----------------PAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp ---------------------------EE----------------ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred ---------------------------Ee----------------cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 01 12677899999999999999999999999998764
No 99
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=7.2e-30 Score=284.00 Aligned_cols=283 Identities=18% Similarity=0.278 Sum_probs=232.1
Q ss_pred cEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCe
Q 001163 778 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY 857 (1134)
Q Consensus 778 ~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~ 857 (1134)
..+.|+||+++ .| +++.|++|+|||+. +|+++.. +...+|...|.+++|+|++++
T Consensus 27 y~~~l~WS~~~-~l-Avg~D~tV~iWd~~----------------------tg~~~~~-~~~~~~~~~V~~v~~~~~~~~ 81 (318)
T 4ggc_A 27 YLNLVDWSSGN-VL-AVALDNSVYLWSAS----------------------SGDILQL-LQMEQPGEYISSVAWIKEGNY 81 (318)
T ss_dssp TCBCEEECTTS-EE-EEEETTEEEEEETT----------------------TCCEEEE-EECCSTTCCEEEEEECTTSSE
T ss_pred cceEEEECCCC-EE-EEEeCCEEEEEECC----------------------CCCEEEE-EEecCCCCeEEEEEECCCCCE
Confidence 45678999987 44 44569999999654 4443322 122248889999999999999
Q ss_pred EEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccc-eEEEeccCccCceEEEEE
Q 001163 858 VMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD-EVKTKLKGHQKRITGLAF 935 (1134)
Q Consensus 858 la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~-~~~~~l~~h~~~V~~l~~ 935 (1134)
|++|+ |++|++||+.+++++..+.+|...+.++.+. +.++++|+.++.+++|+..++ ..+..+.+|...+..+++
T Consensus 82 l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (318)
T 4ggc_A 82 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 158 (318)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred EEEEECCCcEEEeecCCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE
Confidence 99999 9999999999999999999999988887764 469999999999999999875 556788999999999999
Q ss_pred eeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE---E-eeceEEEEeCCCcccc
Q 001163 936 SNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA---V-HETQIAIYEAPKLECL 1011 (1134)
Q Consensus 936 s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~---~-~d~~i~iwd~~~~~~~ 1011 (1134)
++++++|++++.|++|++||+.+++........... +. ..+.+++++|++..++. + .++.|++||.......
T Consensus 159 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~ 234 (318)
T 4ggc_A 159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ-HQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234 (318)
T ss_dssp CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECC-CC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE
T ss_pred cCCCCEEEEEecCcceeEEECCCCcccccceeeecc-cC---CceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc
Confidence 999999999999999999999987644332222222 22 46899999998765543 2 5689999999988776
Q ss_pred eeeccCCCccCEEEEEEccCCCEEEEEe--cCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEE
Q 001163 1012 KQFVPREASGPITHATYSCDSQSIYVAF--EEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFAL 1089 (1134)
Q Consensus 1012 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s 1089 (1134)
.... |...+..++|++++..+++++ .|+.|++||+.+++.+..+. +|.+.|+.+ +|+| |+++|++
T Consensus 235 ~~~~---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-------gH~~~V~~l--~~sp-dg~~l~S 301 (318)
T 4ggc_A 235 SAVD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GHTSRVLSL--TMSP-DGATVAS 301 (318)
T ss_dssp EEEE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CCSSCEEEE--EECT-TSSCEEE
T ss_pred cccc---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-------CCCCCEEEE--EEcC-CCCEEEE
Confidence 6553 577899999999999987765 79999999999999987766 788999988 7889 7899999
Q ss_pred EecCCcEEEEeCCCCC
Q 001163 1090 GLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus 1090 ~~~Dg~v~vW~~~~~~ 1105 (1134)
|+.||+|+|||+.+.+
T Consensus 302 ~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 302 AAADETLRLWRCFELD 317 (318)
T ss_dssp EETTTEEEEECCSCCC
T ss_pred EecCCeEEEEECCCCC
Confidence 9999999999997654
No 100
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=2.5e-30 Score=291.15 Aligned_cols=281 Identities=8% Similarity=0.077 Sum_probs=236.7
Q ss_pred ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCC-E
Q 001163 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT-L 432 (1134)
Q Consensus 354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~ 432 (1134)
.|.+.|++++|+|+++ ++++|+.||.|+|||+.+++..... ..+.+|...|.+++|+|+++ +
T Consensus 9 ~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 9 APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDL----------------LQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEE----------------EEEEECSSCEEEEEEEESSSEE
T ss_pred CCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccccc----------------eeeeecCCceEEEEECCCCCcE
Confidence 3889999999999998 5689999999999999887621100 01357999999999999999 9
Q ss_pred EEEEeCCCEEEEEEc-cCCceeeeeeeeec--CCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC---------Ccee
Q 001163 433 FGVAYSKHIVHLYTY-HGGDELRNHLEIEA--HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT---------GTKQ 500 (1134)
Q Consensus 433 las~s~dg~v~iwd~-~~~~~~~~~~~l~~--h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~---------~~~~ 500 (1134)
|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| +. ++++++.|+.|++||+.+ ++++
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred EEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence 999999999999999 88754 25778 999999999999 77 799999999999999988 7777
Q ss_pred EEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCC-CCc--eeeecCCCCCeeEEEECc-CCCEEEEEecCCCCC
Q 001163 501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN-LGS--RVDYDAPGHSSTMMAYSA-DGARLFSCGTNKEGE 576 (1134)
Q Consensus 501 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~ 576 (1134)
..+. |...|.+++|++ + .+++++.|+.|++||++. ... ......+...+.+++|+| +++++++++.+
T Consensus 145 ~~~~-~~~~v~~~~~~~--~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d---- 215 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNS--S--RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID---- 215 (342)
T ss_dssp SSSS-SCCCEEEEEECS--S--EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT----
T ss_pred eEEe-eCCceEEEEecC--C--cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecC----
Confidence 7777 899999999864 3 299999999999999987 443 234445667899999999 99999999864
Q ss_pred eEEEEEeCCCC------eeEEEecCCCC--------CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCC
Q 001163 577 SYLVEWNESEG------AVKRTYHGLGK--------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGL 642 (1134)
Q Consensus 577 ~~i~~wd~~~~------~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 642 (1134)
+.+++|++... +....+..|.. ..+.+++|+|++++|++++.||.|++||+.+++.+..+..+ +.
T Consensus 216 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-h~ 294 (342)
T 1yfq_A 216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NE 294 (342)
T ss_dssp SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SS
T ss_pred CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc-cC
Confidence 46999999887 77778877642 37999999999999999999999999999999998887643 15
Q ss_pred CCcceEEEcCCCcEEEEEECCCc-EEEEE
Q 001163 643 QASPCIRFNKEGILLAVSTNDNG-IKILA 670 (1134)
Q Consensus 643 ~~v~~v~~sp~~~~l~~~~~dg~-i~iw~ 670 (1134)
..|.+++ |++.+|++++.||. .+.+.
T Consensus 295 ~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 295 DSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp SEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred CCceEec--CCCCeEEEEecCCccccccc
Confidence 5788888 99999999999998 55444
No 101
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=6e-30 Score=291.17 Aligned_cols=291 Identities=17% Similarity=0.229 Sum_probs=238.5
Q ss_pred CceeEEEee-cCCCeeEEEEcCCC---CeEEEEEeCCCcEEEEecCC-ccceeeeceeeeeccccCccccccccccCCCC
Q 001163 346 PKTVVMTLN-QGSAVKSMDFHPVQ---QILLVVGTNMGDVMLWEVGS-RERIAVKSFKVWELGACSMPLQASLSSDYTAS 420 (1134)
Q Consensus 346 ~~~~~~~~~-h~~~V~~v~fsp~g---~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 420 (1134)
+.+.+..+. |.+.|++++|+|++ + ++++|+.||.|+|||+.+ +..+.. .+.+|...
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~~ 88 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTGP 88 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSSC
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccCC
Confidence 445566665 99999999999994 6 679999999999999987 443311 25679999
Q ss_pred EEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEE--ecCCCceEEEEEeCCCeEEEEECCCCc
Q 001163 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF--SYPNKQLSVVTCGEDRVIKVWDAVTGT 498 (1134)
Q Consensus 421 V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~--s~~~~~~~l~s~s~d~~i~iwd~~~~~ 498 (1134)
|.+++|+|++++|++++.||.|++||+.+++... +.+|...|.+++| ++++. +|++++.|+.|++||+.+++
T Consensus 89 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSS
T ss_pred EEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCc
Confidence 9999999999999999999999999999987554 5679999999999 78887 89999999999999999999
Q ss_pred eeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec--CCCCCeeEEEECcCCCE----EEEEecC
Q 001163 499 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD--APGHSSTMMAYSADGAR----LFSCGTN 572 (1134)
Q Consensus 499 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~----l~~~~~~ 572 (1134)
.+..+..|. .+.++.+. . ..+++++.++.+++|+++......... .....+..+.+.++... +++++.+
T Consensus 163 ~~~~~~~~~-~~~~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 237 (368)
T 3mmy_A 163 PMMVLQLPE-RCYCADVI--Y--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE 237 (368)
T ss_dssp CSEEEECSS-CEEEEEEE--T--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT
T ss_pred EEEEEecCC-CceEEEec--C--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC
Confidence 999998765 56666553 3 478888999999999998765544332 23345666776665554 8888764
Q ss_pred CCCCeEEEEEeCCCC---eeEEEecCCCCC-----------ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEec
Q 001163 573 KEGESYLVEWNESEG---AVKRTYHGLGKR-----------SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638 (1134)
Q Consensus 573 ~~~~~~i~~wd~~~~---~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (1134)
+.|++||+... .....+.+|... .+.+++|+|++++|++++.||.|++||+.+++.+..+..
T Consensus 238 ----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (368)
T 3mmy_A 238 ----GRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ 313 (368)
T ss_dssp ----SEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred ----CcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC
Confidence 46999999987 566777776542 599999999999999999999999999999999988875
Q ss_pred CCCCCCcceEEEcCCCcEEEEEECCCcEEEEEcc
Q 001163 639 DGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (1134)
Q Consensus 639 ~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 672 (1134)
+ ...|.+++|+|+|.+|++++.|+..+.|++.
T Consensus 314 ~--~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 314 L--DQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp C--SSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred C--CCCceEEEECCCCCeEEEEeccccccccccc
Confidence 5 6689999999999999999999866665543
No 102
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.1e-30 Score=291.92 Aligned_cols=254 Identities=15% Similarity=0.262 Sum_probs=217.2
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecC--CCceEEEEEeCCCeEE
Q 001163 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIK 490 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~ 490 (1134)
.+.+|.+.|++++|+|++++||+|+.||.|+|||+..+. ......+.+|...|++++|+++ ++ +|++++.|+.|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~ 82 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 82 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEE
Confidence 367899999999999999999999999999999998543 2233368899999999999987 77 899999999999
Q ss_pred EEECCCCc--eeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCC--ceeeecCCCCCeeEEEECc-----
Q 001163 491 VWDAVTGT--KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG--SRVDYDAPGHSSTMMAYSA----- 561 (1134)
Q Consensus 491 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~----- 561 (1134)
+||+.+++ .+..+.+|...|.+++|+++.++.++++++.|+.|++||+.... ....+..+...|.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 99999997 77888899999999999876436899999999999999998764 3445567788999999999
Q ss_pred --------CCCEEEEEecCCCCCeEEEEEeCCCCe----eEEEecCCCCCceEEEEEcCC---CCEEEEEeCCCeEEEEE
Q 001163 562 --------DGARLFSCGTNKEGESYLVEWNESEGA----VKRTYHGLGKRSVGVVQFDTT---KNRFLAAGDEFMIKFWD 626 (1134)
Q Consensus 562 --------~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd 626 (1134)
++.++++++.++ .|++||++++. ....+.+|.. .+.+++|+|+ +++|++++.||.|++||
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADN----LVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp -------CTTCEEEEEETTS----CEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccccCCCCCCEEEEEeCCC----eEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 699999998754 49999998764 4566777776 8999999999 89999999999999999
Q ss_pred cCCCc---eeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 627 MDNVN---LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 627 ~~~~~---~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
+.++. ....+....+...|.+++|+|++++|++++.||.|++|++...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 99875 2333333345778999999999999999999999999999865
No 103
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2e-29 Score=284.38 Aligned_cols=253 Identities=11% Similarity=0.170 Sum_probs=214.7
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCcee-eeeeeeecCCCCEEEEEEec--CCCceEEEEEeCCCeE
Q 001163 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDEL-RNHLEIEAHVGSVNDLAFSY--PNKQLSVVTCGEDRVI 489 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~--~~~~~~l~s~s~d~~i 489 (1134)
++.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|++++|+| +++ +|++++.|+.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 47899999999999999999999999999999999876422 23346789999999999999 577 89999999999
Q ss_pred EEEECCCC---------ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec------------
Q 001163 490 KVWDAVTG---------TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD------------ 548 (1134)
Q Consensus 490 ~iwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~------------ 548 (1134)
++||+.++ +.+..+.+|...|.+++|++..++.++++++.||.|++||+........+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999887 568888999999999999876335899999999999999998776543322
Q ss_pred -CCCCCeeEEEECcC---CCEEEEEecCCCCCeEEEEEeCCCCee--EEEecCCCCCceEEEEEcCCC----CEEEEEeC
Q 001163 549 -APGHSSTMMAYSAD---GARLFSCGTNKEGESYLVEWNESEGAV--KRTYHGLGKRSVGVVQFDTTK----NRFLAAGD 618 (1134)
Q Consensus 549 -~~~~~v~~~~~s~~---~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~ 618 (1134)
.+...+.+++|+|+ +..+++++.+ ..+.+|+...++. +..+.+|.. .|.+++|+|++ ++|++++.
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALE----QAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETT----EEEEEEECTTSCEEEEEECCCCCS-CEEEEEECCCSSCSSEEEEEEET
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCC----CcEEEEccCCCceeeeeecCCCCc-ceeEEEECCCCCCcceEEEEEcC
Confidence 45568999999997 8899998754 4577787777765 667777776 89999999998 89999999
Q ss_pred CCeEEEEEcCCC----------------------------------------------ceeEEEecCCCCCCcceEEEcC
Q 001163 619 EFMIKFWDMDNV----------------------------------------------NLLASIDADGGLQASPCIRFNK 652 (1134)
Q Consensus 619 dg~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~~~v~~v~~sp 652 (1134)
||.|++||+.++ +.+..+. +|...|.+++|+|
T Consensus 239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s~ 316 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD--DHNGEVWSVSWNL 316 (351)
T ss_dssp TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEEC--TTSSCEEEEEECS
T ss_pred CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe--cccccEEEEEEcC
Confidence 999999999865 3444444 4467899999999
Q ss_pred CCcEEEEEECCCcEEEEEccCC
Q 001163 653 EGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 653 ~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
++++|++++.||.|++|++.++
T Consensus 317 ~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 317 TGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp SSCCEEEEETTSCEEEEEECTT
T ss_pred CCCEEEEecCCCcEEEEecCcC
Confidence 9999999999999999999887
No 104
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=296.62 Aligned_cols=252 Identities=12% Similarity=0.210 Sum_probs=205.7
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCce--------eeeeeeeecCC------------CCEEEEEEecCC
Q 001163 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDE--------LRNHLEIEAHV------------GSVNDLAFSYPN 475 (1134)
Q Consensus 416 ~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~--------~~~~~~l~~h~------------~~V~~v~~s~~~ 475 (1134)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++. ......+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 4788999999999999999999999999999997762 11233688998 889999999998
Q ss_pred CceEEEEEeCCCeEEEEECCCCcee---------------------------------------EE-ecCCCcCEEEEec
Q 001163 476 KQLSVVTCGEDRVIKVWDAVTGTKQ---------------------------------------YI-FEGHESPVYSICP 515 (1134)
Q Consensus 476 ~~~~l~s~s~d~~i~iwd~~~~~~~---------------------------------------~~-~~~h~~~v~~~~~ 515 (1134)
....|++++.|++|++||+.++... .. ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 2117999999999999998775442 12 3689999999999
Q ss_pred cccCCccEEEEecCCCcEEEEecCCCCcee--------eecCCCCCeeEEEECcCC-CEEEEEecCCCCCeEEEEEeCCC
Q 001163 516 HHKENIQFIFSTATDGKIKAWLYDNLGSRV--------DYDAPGHSSTMMAYSADG-ARLFSCGTNKEGESYLVEWNESE 586 (1134)
Q Consensus 516 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--------~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~ 586 (1134)
++ ++.+|+++ .|+.|++||+....... .+..+...|.+++|+|++ +++++++.++ .|++||+++
T Consensus 186 ~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg----~i~iwd~~~ 258 (447)
T 3dw8_B 186 NS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG----TIRLCDMRA 258 (447)
T ss_dssp CT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS----CEEEEETTT
T ss_pred cC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC----eEEEEECcC
Confidence 76 45899998 79999999998433322 245677789999999998 8999998754 599999999
Q ss_pred Cee----EEEecCCCC-----------CceEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CceeEEEecCCCCCC------
Q 001163 587 GAV----KRTYHGLGK-----------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-VNLLASIDADGGLQA------ 644 (1134)
Q Consensus 587 ~~~----~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~------ 644 (1134)
++. +..+..+.. ..+.+++|+|++++|++++. +.|++||+.+ ++++..+..+.....
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (447)
T 3dw8_B 259 SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLY 337 (447)
T ss_dssp CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHH
T ss_pred CccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccc
Confidence 887 788887764 27999999999999999999 9999999997 888888876532111
Q ss_pred -------cceEEEcCCCcEEEEEECCCcEEEEEccCCc
Q 001163 645 -------SPCIRFNKEGILLAVSTNDNGIKILANADGI 675 (1134)
Q Consensus 645 -------v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 675 (1134)
+..++|+|++.+|++++.||.|++||+.++.
T Consensus 338 ~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 338 ENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp HTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred cccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 2349999999999999999999999999873
No 105
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=5.6e-29 Score=283.12 Aligned_cols=250 Identities=16% Similarity=0.154 Sum_probs=202.5
Q ss_pred ccccCCCCEEEEEEcCC---CCEEEEEeCCCEEEEEEccC-CceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCe
Q 001163 413 LSSDYTASVNRVMWSPD---GTLFGVAYSKHIVHLYTYHG-GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV 488 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~spd---~~~las~s~dg~v~iwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~ 488 (1134)
.+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+ +..+. ..+.+|...|++++|+|+++ +|++++.|+.
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~ 109 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--KAQQMHTGPVLDVCWSDDGS--KVFTASCDKT 109 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE--EEEEECSSCEEEEEECTTSS--EEEEEETTSE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE--EEeccccCCEEEEEECcCCC--EEEEEcCCCc
Confidence 36889999999999999 69999999999999999997 44331 25788999999999999999 8999999999
Q ss_pred EEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEE
Q 001163 489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFS 568 (1134)
Q Consensus 489 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 568 (1134)
|++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+++.+....+..+. .+.++.+.+ ..+++
T Consensus 110 v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~ 185 (368)
T 3mmy_A 110 AKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVV 185 (368)
T ss_dssp EEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEE
T ss_pred EEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEE
Confidence 9999999998776 5569999999999777777999999999999999999888777776554 455555554 46666
Q ss_pred EecCCCCCeEEEEEeCCCCeeEE-EecCCCCCceEEEEEcCCCCE----EEEEeCCCeEEEEEcCCC---ceeEEEecCC
Q 001163 569 CGTNKEGESYLVEWNESEGAVKR-TYHGLGKRSVGVVQFDTTKNR----FLAAGDEFMIKFWDMDNV---NLLASIDADG 640 (1134)
Q Consensus 569 ~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~----l~~~~~dg~i~iwd~~~~---~~~~~~~~~~ 640 (1134)
++.++ .+.+|++....... ...........++++.++... +++++.||.|++||+... ..+..+..+.
T Consensus 186 ~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 261 (368)
T 3mmy_A 186 ATAER----GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR 261 (368)
T ss_dssp EEGGG----CEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred EeCCC----cEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeee
Confidence 66543 49999998765433 333333335666766665544 999999999999999987 5566666542
Q ss_pred CC----------CCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 641 GL----------QASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 641 ~~----------~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
.. ..|.+++|+|++++|++++.||.|++||+.++
T Consensus 262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence 11 16999999999999999999999999999876
No 106
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=5.4e-29 Score=289.93 Aligned_cols=234 Identities=18% Similarity=0.320 Sum_probs=208.3
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEEC
Q 001163 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA 494 (1134)
Q Consensus 415 ~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~ 494 (1134)
.+|...|.|++| ++++|++|+.||.|++||+.+++... .+.+|.+.|.+++| +++ +|++|+.||+|++||+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 457788999887 89999999999999999999988665 68899999999999 677 8999999999999999
Q ss_pred CCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCce---eeecCCCCCeeEEEECcCCCEEEEEec
Q 001163 495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR---VDYDAPGHSSTMMAYSADGARLFSCGT 571 (1134)
Q Consensus 495 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~ 571 (1134)
.+++.+..+.+|...|.+++|+ + ..+++++.||.|++||+...... ..+..+...|.++++ +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~--~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFN--N--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECC--T--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEc--C--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 9999999999999999999984 2 58999999999999999887655 456777889999998 7889999976
Q ss_pred CCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEc
Q 001163 572 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN 651 (1134)
Q Consensus 572 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 651 (1134)
+ +.|++||+.+++.+..+.+|.. .+.++.+ +++++++|+.||.|++||+.+++.+..+..| ...|.+++|
T Consensus 275 d----g~i~vwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~- 344 (435)
T 1p22_A 275 D----RTIKVWNTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRF- 344 (435)
T ss_dssp T----SEEEEEETTTCCEEEEEECCSS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEC-
T ss_pred C----CeEEEEECCcCcEEEEEcCCCC-cEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCC--cCcEEEEEe-
Confidence 4 4699999999999999998876 8888888 4689999999999999999999999988755 668999998
Q ss_pred CCCcEEEEEECCCcEEEEEccCC
Q 001163 652 KEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 652 p~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
++.+|++|+.||.|++||+.++
T Consensus 345 -~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 345 -DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp -CSSEEEEEETTSCEEEEEHHHH
T ss_pred -cCCEEEEEeCCCcEEEEECCCC
Confidence 7889999999999999998654
No 107
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=5.6e-29 Score=280.05 Aligned_cols=248 Identities=10% Similarity=-0.007 Sum_probs=208.7
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 493 (1134)
..+|.+.|++++|+|++++|++++.|+.|+|||+.+++.......+.+|...|.+++|+|+++. +|++|+.|+.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 4689999999999999999999999999999999988732223346689999999999999872 389999999999999
Q ss_pred C-CCCceeEEecC--CCcCEEEEeccccCCccEEEEecCCCcEEEEecCC---------CCceeeecCCCCCeeEEEECc
Q 001163 494 A-VTGTKQYIFEG--HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN---------LGSRVDYDAPGHSSTMMAYSA 561 (1134)
Q Consensus 494 ~-~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~---------~~~~~~~~~~~~~v~~~~~s~ 561 (1134)
+ .+++. ..+.+ |...|.+++|++ +.++++++.|+.|++||+.. ......+. +...+.+++|+|
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred eccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 9 77755 77888 999999999976 47999999999999999987 55555555 677899999999
Q ss_pred CCCEEEEEecCCCCCeEEEEEeCCC-Cee--EEEecCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCC------c
Q 001163 562 DGARLFSCGTNKEGESYLVEWNESE-GAV--KRTYHGLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMDNV------N 631 (1134)
Q Consensus 562 ~~~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~ 631 (1134)
++ +++++.+ +.|++||+++ +.. ......+. ..+.+++|+| +++++++++.||.|++|+++.. +
T Consensus 161 ~~--l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~ 233 (342)
T 1yfq_A 161 SR--LIVGMNN----SQVQWFRLPLCEDDNGTIEESGLK-YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233 (342)
T ss_dssp SE--EEEEEST----TEEEEEESSCCTTCCCEEEECSCS-SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred Cc--EEEEeCC----CeEEEEECCccccccceeeecCCC-CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccc
Confidence 88 7777654 3699999998 542 23333344 4899999999 9999999999999999999887 7
Q ss_pred eeEEEecCCC-------CCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 632 LLASIDADGG-------LQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 632 ~~~~~~~~~~-------~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
....+..+.. ...|.+++|+|++++|++++.||.|++||+.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred cceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 7788876532 348999999999999999999999999999877
No 108
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=6.8e-29 Score=280.01 Aligned_cols=261 Identities=10% Similarity=0.125 Sum_probs=217.3
Q ss_pred ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC--CCC
Q 001163 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGT 431 (1134)
Q Consensus 354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~ 431 (1134)
+|.+.|++++|+|+|+ +|++|+.||.|+|||+.++...... ...+.+|...|++++|+| |++
T Consensus 9 gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~d~~ 72 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWEL---------------SDSWRAHDSSIVAIDWASPEYGR 72 (351)
T ss_dssp CCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEE---------------EEEEECCSSCEEEEEECCGGGCS
T ss_pred ccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCccee---------------cceeccCCCcEEEEEEcCCCCCC
Confidence 4999999999999999 5689999999999999876432110 012568999999999999 699
Q ss_pred EEEEEeCCCEEEEEEccCCce------eeeeeeeecCCCCEEEEEEecC--CCceEEEEEeCCCeEEEEECCCCceeEEe
Q 001163 432 LFGVAYSKHIVHLYTYHGGDE------LRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIKVWDAVTGTKQYIF 503 (1134)
Q Consensus 432 ~las~s~dg~v~iwd~~~~~~------~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 503 (1134)
+|++|+.||.|++||+.+++. ......+.+|...|.+++|+|+ +. +|++++.|+.|++||+.+++.+..+
T Consensus 73 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~ 150 (351)
T 3f3f_A 73 IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLRSW 150 (351)
T ss_dssp EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTTCC
T ss_pred EEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhccc
Confidence 999999999999999988642 1234467899999999999999 88 8999999999999999988765543
Q ss_pred c-------------CCCcCEEEEecccc-CCccEEEEecCCCcEEEEecCCCCc--eeeecCCCCCeeEEEECcCC----
Q 001163 504 E-------------GHESPVYSICPHHK-ENIQFIFSTATDGKIKAWLYDNLGS--RVDYDAPGHSSTMMAYSADG---- 563 (1134)
Q Consensus 504 ~-------------~h~~~v~~~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~~---- 563 (1134)
. +|...+.+++|++. .++.++++++.|+.+.+|+...... ...+..|...|.+++|+|++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~ 230 (351)
T 3f3f_A 151 TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWY 230 (351)
T ss_dssp EEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSS
T ss_pred cccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcc
Confidence 3 68889999999775 1247999999999998888776654 44566678899999999998
Q ss_pred CEEEEEecCCCCCeEEEEEeCCCC----------------------------------------------eeEEEecCCC
Q 001163 564 ARLFSCGTNKEGESYLVEWNESEG----------------------------------------------AVKRTYHGLG 597 (1134)
Q Consensus 564 ~~l~~~~~~~~~~~~i~~wd~~~~----------------------------------------------~~~~~~~~~~ 597 (1134)
++|++++.|+ .|++||+.++ +.+..+.+|.
T Consensus 231 ~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 306 (351)
T 3f3f_A 231 QLIATGCKDG----RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN 306 (351)
T ss_dssp EEEEEEETTS----CEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTS
T ss_pred eEEEEEcCCC----eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc
Confidence 7899988654 5999999875 5677778777
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Q 001163 598 KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID 637 (1134)
Q Consensus 598 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 637 (1134)
. .|.+++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus 307 ~-~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 307 G-EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp S-CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred c-cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 6 89999999999999999999999999999887666554
No 109
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.6e-29 Score=282.54 Aligned_cols=254 Identities=14% Similarity=0.175 Sum_probs=210.5
Q ss_pred ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCc--cceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC--
Q 001163 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSR--ERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-- 429 (1134)
Q Consensus 354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-- 429 (1134)
+|...|++++|+|+|+ ++|+|+.||.|+|||+..+ +.+. .+.+|...|++++|+|+
T Consensus 9 ~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~ 68 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPKF 68 (379)
T ss_dssp ECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCGGG
T ss_pred CCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeee-------------------EecCCCCcEEEEEeCCCCC
Confidence 4999999999999999 5689999999999999743 3322 25789999999999987
Q ss_pred CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecC--CCceEEEEEeCCCeEEEEECCCCc--eeEEecC
Q 001163 430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIKVWDAVTGT--KQYIFEG 505 (1134)
Q Consensus 430 ~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~ 505 (1134)
+++|++|+.||.|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|+.|++||+.++. ....+.+
T Consensus 69 ~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 145 (379)
T 3jrp_A 69 GTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDA 145 (379)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEEEEC
T ss_pred CCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEEecC
Confidence 999999999999999999998622 23357789999999999999 77 89999999999999998874 4456778
Q ss_pred CCcCEEEEeccccC-----------CccEEEEecCCCcEEEEecCCCCce----eeecCCCCCeeEEEECcC---CCEEE
Q 001163 506 HESPVYSICPHHKE-----------NIQFIFSTATDGKIKAWLYDNLGSR----VDYDAPGHSSTMMAYSAD---GARLF 567 (1134)
Q Consensus 506 h~~~v~~~~~~~~~-----------~~~~l~s~s~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~s~~---~~~l~ 567 (1134)
|...|.+++|++.. ++.++++++.|+.|++||+...... ..+..|...|.+++|+|+ +++|+
T Consensus 146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~ 225 (379)
T 3jrp_A 146 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA 225 (379)
T ss_dssp CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEE
Confidence 99999999998742 4689999999999999999876543 345667889999999999 89999
Q ss_pred EEecCCCCCeEEEEEeCCCCe---eEEEecC-CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeE
Q 001163 568 SCGTNKEGESYLVEWNESEGA---VKRTYHG-LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA 634 (1134)
Q Consensus 568 ~~~~~~~~~~~i~~wd~~~~~---~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 634 (1134)
+++.++ .|++||+.++. ....+.. .....+.+++|+|++++|++++.||.|++|++..+....
T Consensus 226 s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 292 (379)
T 3jrp_A 226 SVSQDR----TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 292 (379)
T ss_dssp EEETTS----CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEE
T ss_pred EEeCCC----EEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCccc
Confidence 998654 49999998864 2222222 133489999999999999999999999999998654433
No 110
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=8.3e-29 Score=285.26 Aligned_cols=249 Identities=15% Similarity=0.169 Sum_probs=208.7
Q ss_pred CCEEEEEEcCCCCEEE-EEeCCCEEEEEEccCCcee-eeeeeeecCCCCEEEEEEec-CCCceEEEEEeCCCeEEEEECC
Q 001163 419 ASVNRVMWSPDGTLFG-VAYSKHIVHLYTYHGGDEL-RNHLEIEAHVGSVNDLAFSY-PNKQLSVVTCGEDRVIKVWDAV 495 (1134)
Q Consensus 419 ~~V~~l~~spd~~~la-s~s~dg~v~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~-~~~~~~l~s~s~d~~i~iwd~~ 495 (1134)
.....++++|+...++ +++.||.|+|||+...... .....+.+|.+.|++++|+| +++ +|++|+.|++|++||+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP 112 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence 3455689999876544 5789999999999664322 23335789999999999999 777 89999999999999999
Q ss_pred CC-------ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee--cCCCCCeeEEEECcCCCEE
Q 001163 496 TG-------TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY--DAPGHSSTMMAYSADGARL 566 (1134)
Q Consensus 496 ~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l 566 (1134)
++ +.+..+.+|...|.+++|+++.. .+|++++.|+.|++||+.+.+....+ ..+...|.+++|+|++++|
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 191 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ-NVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECSSBT-TEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCE
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECcCCC-CEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEE
Confidence 88 67888999999999999976532 59999999999999999988887777 6788899999999999999
Q ss_pred EEEecCCCCCeEEEEEeCCCCeeEEEe-cCCCCCceEEEEEcCCCCEEEEE---eCCCeEEEEEcCCCce-eEEEecCCC
Q 001163 567 FSCGTNKEGESYLVEWNESEGAVKRTY-HGLGKRSVGVVQFDTTKNRFLAA---GDEFMIKFWDMDNVNL-LASIDADGG 641 (1134)
Q Consensus 567 ~~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~~~ 641 (1134)
++++.++ .|++||+++++.+..+ ..|....+..+.|+|++.++++| +.|+.|++||+.+++. +..... .+
T Consensus 192 ~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~ 266 (402)
T 2aq5_A 192 CTSCRDK----RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DT 266 (402)
T ss_dssp EEEETTS----EEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CC
T ss_pred EEEecCC----cEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cC
Confidence 9998644 6999999999999998 67776558999999999999998 7999999999998765 333332 33
Q ss_pred CCCcceEEEcCCCcEEEE-EECCCcEEEEEccCCc
Q 001163 642 LQASPCIRFNKEGILLAV-STNDNGIKILANADGI 675 (1134)
Q Consensus 642 ~~~v~~v~~sp~~~~l~~-~~~dg~i~iw~~~~~~ 675 (1134)
...+.+++|+|++++|++ ++.||.|++|++.++.
T Consensus 267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 557899999999999875 4579999999998764
No 111
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.5e-28 Score=281.55 Aligned_cols=300 Identities=12% Similarity=0.067 Sum_probs=232.8
Q ss_pred CCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCcc---ceeeeceeeeecccc----------------------------
Q 001163 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRE---RIAVKSFKVWELGAC---------------------------- 405 (1134)
Q Consensus 357 ~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~---------------------------- 405 (1134)
.+|.+++|+|||+ +++++ .++.|++||+.+|+ .+.. |.....
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC-----------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhccccccccccccccc
Confidence 5788999999999 44444 57899999999998 3332 221100
Q ss_pred ------------CccccccccccCCCCEEEEEEcCCCCEE-EEEeCCCEEEEEEcc--CCceeeeeeeeecCCCCEEEEE
Q 001163 406 ------------SMPLQASLSSDYTASVNRVMWSPDGTLF-GVAYSKHIVHLYTYH--GGDELRNHLEIEAHVGSVNDLA 470 (1134)
Q Consensus 406 ------------~~~~~~~~~~~h~~~V~~l~~spd~~~l-as~s~dg~v~iwd~~--~~~~~~~~~~l~~h~~~V~~v~ 470 (1134)
..........+|.+.|.+++|+|++++| |+|+.||.|+|||+. +++.+... ....|...|++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~ 156 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR-KRFCFSKRPNAIS 156 (450)
T ss_dssp ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE-EEEECSSCEEEEE
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee-ecccCCCCceEEE
Confidence 0000001123677789999999999996 899999999999999 77766532 1236789999999
Q ss_pred EecCCCceEEEEEeCCCeEEEEECCCCceeE----EecCCCcCEEEEecccc-CCccEEEEecCCCcEEEEecCCCCcee
Q 001163 471 FSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY----IFEGHESPVYSICPHHK-ENIQFIFSTATDGKIKAWLYDNLGSRV 545 (1134)
Q Consensus 471 ~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~----~~~~h~~~v~~~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~~~ 545 (1134)
|+|+++ +|++|+.|+.|++|++.+++... .+.+|...|.+++|+++ ..+.+|++++.|+.|++||+.......
T Consensus 157 ~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 157 IAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 999999 89999999999999998887554 78889999999999876 225899999999999999999887776
Q ss_pred e-ecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCC------------------------CCCc
Q 001163 546 D-YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL------------------------GKRS 600 (1134)
Q Consensus 546 ~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~------------------------~~~~ 600 (1134)
. +..|...|.+++|+ ++++|++++.+ +.|++||+.+++.+..+..+ ....
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~d----~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDYLLLSAGGD----DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp EECCCCSSCEEEEEEC-STTEEEEEESS----SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred eeecCCCCceEEEEEC-CCCEEEEEeCC----CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 6 55788899999999 99999999864 46999999999988887632 1236
Q ss_pred eEEEEEcCCCCEEEEEe-CCCeEEEEEc--CCC---ceeEEEecCCCCCCcceEEEcCCCcEEEEEEC------CCcEEE
Q 001163 601 VGVVQFDTTKNRFLAAG-DEFMIKFWDM--DNV---NLLASIDADGGLQASPCIRFNKEGILLAVSTN------DNGIKI 668 (1134)
Q Consensus 601 v~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~------dg~i~i 668 (1134)
+..++|+|+++++++++ .++.|++|++ .++ +.+..+..+ ..+.+++|+|++.++++++. +..|.+
T Consensus 310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence 88999999999999999 8999999999 555 556666644 57899999996544444332 456899
Q ss_pred EEccCC
Q 001163 669 LANADG 674 (1134)
Q Consensus 669 w~~~~~ 674 (1134)
|.+...
T Consensus 387 ~~~~~~ 392 (450)
T 2vdu_B 387 IEYNLN 392 (450)
T ss_dssp EEEETT
T ss_pred EEEEcC
Confidence 987643
No 112
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.1e-26 Score=270.66 Aligned_cols=310 Identities=14% Similarity=0.089 Sum_probs=225.6
Q ss_pred eeeeEeCCCCCCcccccCCCCCceeEEEeecCCCeeEEE---EcCCCCeEEEEE-------------eCCCcEEEEecC-
Q 001163 325 ILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMD---FHPVQQILLVVG-------------TNMGDVMLWEVG- 387 (1134)
Q Consensus 325 i~~~~~s~~~~~l~~~~~d~~~~~~~~~~~h~~~V~~v~---fsp~g~~lla~g-------------s~dg~v~iwd~~- 387 (1134)
|..+.+.|....+........+... ........+..++ |+|+++.+++.. +.++.+.||.++
T Consensus 30 ~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 108 (433)
T 3bws_A 30 IVKFSIHPYKGTVIRLGEEILPFKV-LEMDKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDK 108 (433)
T ss_dssp EEEEEEECCTTCEEEETTEECCEEE-EEEETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCB
T ss_pred EEEEecccccCceEEcCceecceee-eecccCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECC
Confidence 3466777764443333222222211 1123566788888 999887654432 223323444433
Q ss_pred -CccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeee--eeecCCC
Q 001163 388 -SRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHL--EIEAHVG 464 (1134)
Q Consensus 388 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~--~l~~h~~ 464 (1134)
++....... +. ....+.+++|+|++.++++++.++.|++||+.+++...... .+.+|.+
T Consensus 109 ~~~~~~~~~~-----------------~~-~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 170 (433)
T 3bws_A 109 EGITHRFISR-----------------FK-TGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLG 170 (433)
T ss_dssp TTCSEEEEEE-----------------EE-CSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCC
T ss_pred CCCcceEEEE-----------------Ec-CCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCC
Confidence 232111100 12 23456699999988888888889999999999988654221 2458999
Q ss_pred CEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEE-EEecCCCcEEEEecCCCCc
Q 001163 465 SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFI-FSTATDGKIKAWLYDNLGS 543 (1134)
Q Consensus 465 ~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~ 543 (1134)
.|.+++|++++. ++++++.|+.|++||+.+++.+..+..|...+.+++|+++. ..+ ++++.|+.|++||+.+.+.
T Consensus 171 ~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~i~~~d~~~~~~ 246 (433)
T 3bws_A 171 FVETISIPEHNE--LWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIR--DLVYCSNWISEDISVIDRKTKLE 246 (433)
T ss_dssp EEEEEEEGGGTE--EEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTT--TEEEEEETTTTEEEEEETTTTEE
T ss_pred ceeEEEEcCCCE--EEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCC--CEEEEEecCCCcEEEEECCCCcE
Confidence 999999999988 89999999999999999999999999999999999997644 555 5666899999999987766
Q ss_pred eeeecCCCCCeeEEEECcCCCEEEEEecCCC----CCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEE-EEeC
Q 001163 544 RVDYDAPGHSSTMMAYSADGARLFSCGTNKE----GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFL-AAGD 618 (1134)
Q Consensus 544 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~ 618 (1134)
...+.. ...+.+++|+|+++.+++++.+.. .++.|++||+.+++.+..+.. .. .+..++|+|+++.++ +++.
T Consensus 247 ~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~-~~-~~~~~~~~~~g~~l~~~~~~ 323 (433)
T 3bws_A 247 IRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP-PG-NKRHIVSGNTENKIYVSDMC 323 (433)
T ss_dssp EEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE-EE-CEEEEEECSSTTEEEEEETT
T ss_pred EEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC-CC-CcceEEECCCCCEEEEEecC
Confidence 555544 446899999999999998875321 356799999999988776632 22 678899999997664 5579
Q ss_pred CCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECC
Q 001163 619 EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 663 (1134)
Q Consensus 619 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d 663 (1134)
++.|++||+.+++.+..+.. ...+.+++|+|+|+++++++.+
T Consensus 324 ~~~v~v~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~ 365 (433)
T 3bws_A 324 CSKIEVYDLKEKKVQKSIPV---FDKPNTIALSPDGKYLYVSCRG 365 (433)
T ss_dssp TTEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSSEEEEEECC
T ss_pred CCEEEEEECCCCcEEEEecC---CCCCCeEEEcCCCCEEEEEecC
Confidence 99999999999998888763 3468899999999998888763
No 113
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.1e-27 Score=253.98 Aligned_cols=219 Identities=13% Similarity=0.140 Sum_probs=166.2
Q ss_pred ccccEEEEEEecC----CceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEE
Q 001163 775 TAMRVSRLIYTNS----GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFA 850 (1134)
Q Consensus 775 ~~~~i~~l~~spd----g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~ 850 (1134)
+...|.+++|+|| ++.+++++.+ +.+|++
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l--------------------------------------------- 142 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL--------------------------------------------- 142 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE--EEEEEE---------------------------------------------
T ss_pred cccceEEEEECCCccccccEEEeCCCe--EEEEec---------------------------------------------
Confidence 4567889999999 9988887744 556632
Q ss_pred EcCCCCeEEEee---CCeEEEEEc-cCCeEEEEecCCCCCeEEEEEcC--CCCcEEEEEeCCCcEEEEEcccceEEEecc
Q 001163 851 LSKNDSYVMSAS---GGKISLFNM-MTFKTMTTFMPPPPAATFLAFHP--QDNNIIAIGMEDSSIQIYNVRVDEVKTKLK 924 (1134)
Q Consensus 851 ~s~dg~~la~~s---dg~i~lwd~-~~~~~~~~~~~~~~~v~~l~~sp--~~~~~la~g~~dg~i~iwd~~~~~~~~~l~ 924 (1134)
++|+++.++. |+.|++|++ .+++.+..+.+|...++.++|++ +++.+||+|+.|++|+|||+.+|++++++.
T Consensus 143 --~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~ 220 (356)
T 2w18_A 143 --TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMH 220 (356)
T ss_dssp --TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred --CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEc
Confidence 3566666643 788999998 55888888888888888888887 467899999999999999999999999998
Q ss_pred Ccc---CceEEEEEeeCCCEE------------EEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCC
Q 001163 925 GHQ---KRITGLAFSNTLNVL------------VSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQ 989 (1134)
Q Consensus 925 ~h~---~~V~~l~~s~d~~~l------------~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg 989 (1134)
+|. ..+.+++|+|+|.++ ++|+.|++|++||..+++.........+.+|.. . .+..+.++
T Consensus 221 g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~---~--~lsg~~sg 295 (356)
T 2w18_A 221 IDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG---R--FLEGDVKD 295 (356)
T ss_dssp CCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC---C--EEEEEEET
T ss_pred CCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc---e--eEccccCC
Confidence 754 367788999999886 668889999999999876443222223445542 2 23334447
Q ss_pred CEEEEE-eeceEEEEeCCCcccceeeccCCCccCEE-EEEEccCCCEEEEEecCCcEEEeec
Q 001163 990 THLLAV-HETQIAIYEAPKLECLKQFVPREASGPIT-HATYSCDSQSIYVAFEEGSVGVLTA 1049 (1134)
Q Consensus 990 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~-~~~~s~dg~~l~s~s~Dg~i~vwd~ 1049 (1134)
.+++++ .|++|+|||+.+++++.++. +|...+. +++|||||++|++|+.|++|+|||+
T Consensus 296 ~~lASgS~DgTIkIWDl~tGk~l~tL~--gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 296 HCAAAILTSGTIAIWDLLLGQCTALLP--PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TEEEEEETTSCEEEEETTTCSEEEEEC--CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEec--CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 788884 79999999999999999987 6766554 6899999999999999999999996
No 114
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=1.2e-27 Score=277.72 Aligned_cols=266 Identities=13% Similarity=0.246 Sum_probs=215.1
Q ss_pred eEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163 349 VVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 428 (1134)
Q Consensus 349 ~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 428 (1134)
....+.|.+.|++++|+|++..++|+|+.||.|+|||+.+...... ..........+.+|...|.+++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEeCC
Confidence 4566779999999999998666889999999999999976311000 0000001112578999999999999
Q ss_pred CCC-EEEEEeCCCEEEEEEccCCce----eeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC---cee
Q 001163 429 DGT-LFGVAYSKHIVHLYTYHGGDE----LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG---TKQ 500 (1134)
Q Consensus 429 d~~-~las~s~dg~v~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~---~~~ 500 (1134)
++. +|++|+.||.|++||+.++.. +.....+.+|...|.+++|+|++.. +|++++.|+.|++||++++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 998 999999999999999987432 2223457789999999999995444 7999999999999999987 577
Q ss_pred EEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCC-CceeeecCCCCCeeEEEECcCCC-EEEEEecCCCCCeE
Q 001163 501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVDYDAPGHSSTMMAYSADGA-RLFSCGTNKEGESY 578 (1134)
Q Consensus 501 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~ 578 (1134)
..+..|...|.+++|++... .++++|+.||.|++||++.. .....+..+...|.+++|+|+++ ++++++.++ .
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~----~ 345 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR----R 345 (430)
T ss_dssp EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS----C
T ss_pred eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCC----c
Confidence 88889999999999976542 47999999999999999974 45667777888999999999996 577776543 5
Q ss_pred EEEEeCCC--------------CeeEEEecCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCC
Q 001163 579 LVEWNESE--------------GAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNV 630 (1134)
Q Consensus 579 i~~wd~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 630 (1134)
|++||+.. .+.+..+.+|.. .+..++|+|++. .+++++.||.|++|++...
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999987 356677777766 899999999998 8999999999999998754
No 115
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1.6e-27 Score=268.42 Aligned_cols=276 Identities=14% Similarity=0.136 Sum_probs=214.2
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
|...|++++|||||+ ++|+|+.++ ++|||+.+++.... .+...+..+++++++++++
T Consensus 18 h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~ 74 (355)
T 3vu4_A 18 VSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMS---------------------QEMRHLSKVRMLHRTNYVA 74 (355)
T ss_dssp -CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEE---------------------EECSCCCEEEECTTSSEEE
T ss_pred CCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeee---------------------eecCCeEEEEEcCCCCEEE
Confidence 899999999999999 568888775 78999988765432 1223588899999988884
Q ss_pred -EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC-ceeEEecCCCcCEEE
Q 001163 435 -VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYS 512 (1134)
Q Consensus 435 -s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~ 512 (1134)
+++.|++|+|||+.+++.+. .+. |...|.+++|+++. ++.+ .|+.|++||+.++ +.+..+.. +...
T Consensus 75 ~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~ 142 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR---FGGV 142 (355)
T ss_dssp EECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEE
T ss_pred EEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc---CCce
Confidence 67788999999999998765 343 67799999998764 3333 4789999999998 77766654 3333
Q ss_pred EeccccCCccEEEE--ecCCCcEEEEecCCCC----------------ceeeecCCCCCeeEEEECcCCCEEEEEecCCC
Q 001163 513 ICPHHKENIQFIFS--TATDGKIKAWLYDNLG----------------SRVDYDAPGHSSTMMAYSADGARLFSCGTNKE 574 (1134)
Q Consensus 513 ~~~~~~~~~~~l~s--~s~dg~i~vwd~~~~~----------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 574 (1134)
+++++ .+++. |+.||.|++||+.... ....+..|...|.+++|+|+|++|++++.|
T Consensus 143 ~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d-- 216 (355)
T 3vu4_A 143 CEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQD-- 216 (355)
T ss_dssp EEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETT--
T ss_pred EEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCC--
Confidence 44443 34544 6899999999998754 156678888999999999999999999864
Q ss_pred CCeE-EEEEeCCCCeeEEEec-C-CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeE--E--------------
Q 001163 575 GESY-LVEWNESEGAVKRTYH-G-LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA--S-------------- 635 (1134)
Q Consensus 575 ~~~~-i~~wd~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~-------------- 635 (1134)
+. |++||+.+++.+..+. + |. ..|.+++|+|++++|++++.|++|++||+..+.... .
T Consensus 217 --~~~v~iwd~~~~~~~~~~~~g~h~-~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (355)
T 3vu4_A 217 --GTIIRVFKTEDGVLVREFRRGLDR-ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEW 293 (355)
T ss_dssp --CSEEEEEETTTCCEEEEEECTTCC-SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSS
T ss_pred --CCEEEEEECCCCcEEEEEEcCCCC-CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccccccc
Confidence 45 9999999999999998 5 55 499999999999999999999999999997653211 1
Q ss_pred ----Eec-CCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 636 ----IDA-DGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 636 ----~~~-~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
... .........++|+++++++++++.||.+++|++..+
T Consensus 294 ~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 294 SLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred ceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 000 011123467999999999999999999999998654
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.8e-28 Score=303.16 Aligned_cols=254 Identities=15% Similarity=0.259 Sum_probs=214.8
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecC--CCceEEEEEeCCCeEE
Q 001163 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIK 490 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~ 490 (1134)
++.+|.+.|++++|+|++++|++|+.||.|+|||+.++.. .....+.+|.+.|++++|+++ ++ +|++|+.||.|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 80 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence 3689999999999999999999999999999999985432 233468899999999999988 77 899999999999
Q ss_pred EEECCCCc--eeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCC--ceeeecCCCCCeeEEEECc-----
Q 001163 491 VWDAVTGT--KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG--SRVDYDAPGHSSTMMAYSA----- 561 (1134)
Q Consensus 491 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~----- 561 (1134)
+||+.+++ .+..+.+|...|.+++|+++.++.++++|+.||.|++||+.... ....+..+...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999987 77888999999999999876446899999999999999998763 3445567778999999999
Q ss_pred --------CCCEEEEEecCCCCCeEEEEEeCCCC----eeEEEecCCCCCceEEEEEcCC---CCEEEEEeCCCeEEEEE
Q 001163 562 --------DGARLFSCGTNKEGESYLVEWNESEG----AVKRTYHGLGKRSVGVVQFDTT---KNRFLAAGDEFMIKFWD 626 (1134)
Q Consensus 562 --------~~~~l~~~~~~~~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd 626 (1134)
+++.+++++.++ .|++||++++ .....+.+|.. .|.+++|+|+ ++++++++.||.|++||
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg----~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADN----LVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp ------CGGGCCEEEEETTS----CEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccCCCCCEEEEEECCC----eEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 589999998754 4999999877 56667777776 8999999999 89999999999999999
Q ss_pred cCCCcee---EEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 627 MDNVNLL---ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 627 ~~~~~~~---~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
+.+++.. .......+...|.+++|+|+|.++++++.||.|++|++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9887422 11222345678999999999999999999999999998864
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=2.3e-26 Score=264.08 Aligned_cols=279 Identities=13% Similarity=0.090 Sum_probs=225.8
Q ss_pred CeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE-EEEeCCCEEEEEEc
Q 001163 369 QILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF-GVAYSKHIVHLYTY 447 (1134)
Q Consensus 369 ~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l-as~s~dg~v~iwd~ 447 (1134)
++++++++.|+.|++||+.+++.+.. +.+| ..+.+++|+|+|++| ++++.|+.|++||+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~ 61 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDT 61 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence 46889999999999999999876653 3334 458999999999987 66779999999999
Q ss_pred cCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEE-EE
Q 001163 448 HGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFI-FS 526 (1134)
Q Consensus 448 ~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s 526 (1134)
.+++.+. .+..|. .+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+ ..+.+++|+++ ++.+ ++
T Consensus 62 ~~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~d--g~~l~~~ 133 (391)
T 1l0q_A 62 ATNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPD--GKKLYVT 133 (391)
T ss_dssp TTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTT--SSEEEEE
T ss_pred CCCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCC--CCEEEEE
Confidence 9988665 344444 8999999999994 3456667899999999999998888755 46888998654 4655 78
Q ss_pred ecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEE
Q 001163 527 TATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQF 606 (1134)
Q Consensus 527 ~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~ 606 (1134)
++.|+.|++||+.+.+....+..+ ..+..++|+|+++.++..+. .++.|++||+.+++....+..+. .+..++|
T Consensus 134 ~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~ 207 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAV 207 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEE
T ss_pred eCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecCC--CccceEE
Confidence 889999999999887766666543 46789999999998855432 24569999999998888776543 6889999
Q ss_pred cCCCCEEEEEe---CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEE-EEEECCCcEEEEEccCCceeEEEec
Q 001163 607 DTTKNRFLAAG---DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILL-AVSTNDNGIKILANADGIRLLRTVE 682 (1134)
Q Consensus 607 ~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~ 682 (1134)
+|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.|+.|++||+.++ .....+.
T Consensus 208 ~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~ 283 (391)
T 1l0q_A 208 NPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATMA 283 (391)
T ss_dssp CTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE
T ss_pred CCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEE
Confidence 99999999988 68999999999999888887542 46889999999877 56678999999999988 6666665
Q ss_pred cCc
Q 001163 683 SRT 685 (1134)
Q Consensus 683 ~~~ 685 (1134)
.+.
T Consensus 284 ~~~ 286 (391)
T 1l0q_A 284 VGK 286 (391)
T ss_dssp CSS
T ss_pred CCc
Confidence 543
No 118
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.2e-26 Score=246.22 Aligned_cols=293 Identities=15% Similarity=0.141 Sum_probs=209.2
Q ss_pred EEEEEEec-CCCceEEEEEeCCCeEEEEECCCC---ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCC
Q 001163 466 VNDLAFSY-PNKQLSVVTCGEDRVIKVWDAVTG---TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL 541 (1134)
Q Consensus 466 V~~v~~s~-~~~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~ 541 (1134)
+.++-|-. ..+...+++++. ..|++|+..++ ++++++.+|..+|..+.+.++.-+-..++-+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------- 107 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------- 107 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-------------
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-------------
Confidence 55666643 344556777775 69999999999 8999999999999999987765432222111
Q ss_pred CceeeecCCCCCeeEEEECcC----CCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe
Q 001163 542 GSRVDYDAPGHSSTMMAYSAD----GARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG 617 (1134)
Q Consensus 542 ~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 617 (1134)
..+...|.+++++|| ++.+++++. .+.+|++. +++.+.+++
T Consensus 108 ------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~-----------------------~g~lv~ss~ 152 (356)
T 2w18_A 108 ------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLT-----------------------KRRLVSSSG 152 (356)
T ss_dssp ------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEET-----------------------TTEEEEEES
T ss_pred ------cccccceEEEEECCCccccccEEEeCCC------eEEEEecC-----------------------CCcEEEecc
Confidence 123447889999999 889988763 26666532 333333322
Q ss_pred --CCCeEEEEEc-CCCceeEEEecCCCCCCcceEEEcC---CCcEEEEEECCCcEEEEEccCCceeEEEeccCccccccc
Q 001163 618 --DEFMIKFWDM-DNVNLLASIDADGGLQASPCIRFNK---EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRV 691 (1134)
Q Consensus 618 --~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~sp---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 691 (1134)
.|+.|++|++ .+|+.+..+..+ ...+..++|++ ++.+|++++.|++|+|||+.++ +.++++.++..
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~s~~~~--~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~----- 224 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKENQFLM--PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDS----- 224 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEEEEEEC--CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC------
T ss_pred cCCCCcEEEEEECCCCceeeeeccC--CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCc-----
Confidence 5788888888 447777777766 45778899998 7799999999999999999998 56666643211
Q ss_pred chhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccC
Q 001163 692 ASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLP 771 (1134)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~ 771 (1134)
T Consensus 225 -------------------------------------------------------------------------------- 224 (356)
T 2w18_A 225 -------------------------------------------------------------------------------- 224 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEE
Q 001163 772 DNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFAL 851 (1134)
Q Consensus 772 ~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~ 851 (1134)
+...+.+++|+|+|.++++++.+.. +
T Consensus 225 ---~v~~v~~vafSpdG~~lvs~s~~~~--~------------------------------------------------- 250 (356)
T 2w18_A 225 ---YQASVCHKAYSEMGLLFIVLSHPCA--K------------------------------------------------- 250 (356)
T ss_dssp -----CCCEEEEEEETTEEEEEEC--------------------------------------------------------
T ss_pred ---ceeeeEEEEECCCCCEEEEeccCCC--c-------------------------------------------------
Confidence 2235778899999998887764311 1
Q ss_pred cCCCCeEEEee-CCeEEEEEccCCeEEEEe-----cCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccC
Q 001163 852 SKNDSYVMSAS-GGKISLFNMMTFKTMTTF-----MPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG 925 (1134)
Q Consensus 852 s~dg~~la~~s-dg~i~lwd~~~~~~~~~~-----~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~ 925 (1134)
..+++|+ |++|++||..+++.+..+ .+|...+.+..+ ++.++|+|+.|++|+|||+.+++++.++.+
T Consensus 251 ----w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~g 323 (356)
T 2w18_A 251 ----ESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPP 323 (356)
T ss_dssp -----------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred ----ceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecC
Confidence 1356777 899999999999988765 366655544444 367999999999999999999999999999
Q ss_pred ccCceE-EEEEeeCCCEEEEEeCCCcEEEEEC
Q 001163 926 HQKRIT-GLAFSNTLNVLVSSGADSQLCVWST 956 (1134)
Q Consensus 926 h~~~V~-~l~~s~d~~~l~s~s~Dg~i~iwd~ 956 (1134)
|...+. .++|||||++|+||+.|++|+|||+
T Consensus 324 H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 324 VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 988765 5899999999999999999999995
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=4.4e-27 Score=264.91 Aligned_cols=295 Identities=9% Similarity=0.112 Sum_probs=211.0
Q ss_pred EEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEE-EE
Q 001163 581 EWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILL-AV 659 (1134)
Q Consensus 581 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l-~~ 659 (1134)
+|++.+.+.+.....|.. .|.+++|+|++++|++|+.++ +++|+..+++.......+ .+..+++.++++.+ ++
T Consensus 3 i~s~~~~~~~~~~~~h~~-~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 76 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSN-PVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR----HLSKVRMLHRTNYVAFV 76 (355)
T ss_dssp ----------------CC-CCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS----CCCEEEECTTSSEEEEE
T ss_pred cccccccCCccccccCCC-ceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC----CeEEEEEcCCCCEEEEE
Confidence 456666777776777766 899999999999999988775 789999988776665432 47788999988877 56
Q ss_pred EECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccc
Q 001163 660 STNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDV 739 (1134)
Q Consensus 660 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1134)
++.|++|++||..++ ..+..+.
T Consensus 77 ~~~d~~v~iWd~~~~-~~~~~~~--------------------------------------------------------- 98 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKK-QDVSRIK--------------------------------------------------------- 98 (355)
T ss_dssp CSSTTEEEEEETTTT-EEEEEEE---------------------------------------------------------
T ss_pred ECCccEEEEEECCCC-cEEEEEE---------------------------------------------------------
Confidence 777899999999877 3332221
Q ss_pred ccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccC
Q 001163 740 KPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTN 819 (1134)
Q Consensus 740 ~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 819 (1134)
+...|.++.|+++.. ++ ..++.+++|++....
T Consensus 99 -----------------------------------~~~~v~~v~~~~~~~--~~-~~~~~i~i~d~~~~~---------- 130 (355)
T 3vu4_A 99 -----------------------------------VDAPVKDLFLSREFI--VV-SYGDVISVFKFGNPW---------- 130 (355)
T ss_dssp -----------------------------------CSSCEEEEEECSSEE--EE-EETTEEEEEESSTTC----------
T ss_pred -----------------------------------CCCceEEEEEcCCEE--EE-EEcCEEEEEECCCCc----------
Confidence 234678888887753 22 347889999876320
Q ss_pred CCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEe--e-CCeEEEEEccCCe----------------EEEEe
Q 001163 820 QAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSA--S-GGKISLFNMMTFK----------------TMTTF 880 (1134)
Q Consensus 820 ~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~--s-dg~i~lwd~~~~~----------------~~~~~ 880 (1134)
+.+.. + ..+...+++++ .+++++ + +|.|++||+.+++ ++..+
T Consensus 131 -----------~~~~~-~-----~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~ 191 (355)
T 3vu4_A 131 -----------KRITD-D-----IRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI 191 (355)
T ss_dssp -----------CBSSC-C-----EEEEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEE
T ss_pred -----------eeeEE-e-----ccCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE
Confidence 11110 1 11344566777 666664 4 8999999998865 27889
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEEeCCCc-EEEEEcccceEEEecc-C-ccCceEEEEEeeCCCEEEEEeCCCcEEEEECC
Q 001163 881 MPPPPAATFLAFHPQDNNIIAIGMEDSS-IQIYNVRVDEVKTKLK-G-HQKRITGLAFSNTLNVLVSSGADSQLCVWSTD 957 (1134)
Q Consensus 881 ~~~~~~v~~l~~sp~~~~~la~g~~dg~-i~iwd~~~~~~~~~l~-~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~ 957 (1134)
.+|...|++++|+| ++++||+|+.|++ |+|||+.+++.+..+. + |.+.|++++|+|++++|++++.|++|++||+.
T Consensus 192 ~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 192 KAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp CCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred EccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence 99999999999999 8999999999998 9999999999999998 5 99999999999999999999999999999998
Q ss_pred CCccccceeee------------------ecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCccc
Q 001163 958 GWEKQASKFLT------------------IPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLEC 1010 (1134)
Q Consensus 958 ~~~~~~~~~~~------------------~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~ 1010 (1134)
.+.......+. ..... ......++|++||++|+++ .||.+++|++..++.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 271 NDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDK---HVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp CCSCCCSEETTTTEECCCCCCSSCSEEEECCCCT---TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred CCCCcccccccceeeccccccccceeEEEeccCC---CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 75432221110 11111 1234779999999999995 899999999876553
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=7.8e-26 Score=259.60 Aligned_cols=328 Identities=10% Similarity=0.107 Sum_probs=250.7
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEE-EEecCCCcEEEEecCCCCceeeecCCCCCeeEE
Q 001163 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFI-FSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMM 557 (1134)
Q Consensus 479 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 557 (1134)
++++++.|+.|++||+.+++.+..+..|. .+.+++|+++ +.++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~d--g~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPD--GTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTT--SSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCC--CCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 78999999999999999999999998775 4889998654 4655 788899999999998877766666544 89999
Q ss_pred EECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCceeEEE
Q 001163 558 AYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMDNVNLLASI 636 (1134)
Q Consensus 558 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~ 636 (1134)
+|+|+++++++++.+ +..|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++.+..+
T Consensus 80 ~~spdg~~l~~~~~~---~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMA---SSTLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp EECTTSSEEEEEETT---TTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEECC---CCEEEEEECCCCeEEEEEeCCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 999999988776532 3469999999999988887654 67899999999987 57778999999999999988888
Q ss_pred ecCCCCCCcceEEEcCCCcEE-EEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccC
Q 001163 637 DADGGLQASPCIRFNKEGILL-AVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTS 715 (1134)
Q Consensus 637 ~~~~~~~~v~~v~~sp~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 715 (1134)
..+ ..+.+++|+|+++.+ ++++.++.|++||+.++ .....+.
T Consensus 155 ~~~---~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~--------------------------------- 197 (391)
T 1l0q_A 155 SVG---RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVK--------------------------------- 197 (391)
T ss_dssp ECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE---------------------------------
T ss_pred ecC---CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEe---------------------------------
Confidence 753 346899999999877 56778899999998765 1111100
Q ss_pred cCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeec
Q 001163 716 LGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA 795 (1134)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~ 795 (1134)
T Consensus 198 -------------------------------------------------------------------------------- 197 (391)
T 1l0q_A 198 -------------------------------------------------------------------------------- 197 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee----CCeEEEEEc
Q 001163 796 SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS----GGKISLFNM 871 (1134)
Q Consensus 796 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s----dg~i~lwd~ 871 (1134)
+...+.+++|+|+|+++++++ ++.|++||+
T Consensus 198 ----------------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 198 ----------------------------------------------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp ----------------------------------------------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred ----------------------------------------------cCCCccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence 122345666777777666654 578999999
Q ss_pred cCCeEEEEecCCCCCeEEEEEcCCCCcEE-EEEeCCCcEEEEEcccceEEEeccCccCceE---EEE------------E
Q 001163 872 MTFKTMTTFMPPPPAATFLAFHPQDNNII-AIGMEDSSIQIYNVRVDEVKTKLKGHQKRIT---GLA------------F 935 (1134)
Q Consensus 872 ~~~~~~~~~~~~~~~v~~l~~sp~~~~~l-a~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~---~l~------------~ 935 (1134)
.+++.+..+..+. .+.+++|+| ++++| ++++.|+.|++||+.+++.+..+..|..+.. .+. |
T Consensus 232 ~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~f 309 (391)
T 1l0q_A 232 GTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADF 309 (391)
T ss_dssp TTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCE
T ss_pred CCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccccccc
Confidence 8888888887654 588999999 77666 6778899999999999999988877765432 122 3
Q ss_pred eeCC----------CEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE
Q 001163 936 SNTL----------NVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA 994 (1134)
Q Consensus 936 s~d~----------~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~ 994 (1134)
+.+. ..+.+.+.|..+++|++..+... .. ......|+++|.|.+.
T Consensus 310 s~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~------~~--------~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 310 KSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS------KK--------QNPTHTYSETGIYTVR 364 (391)
T ss_dssp EESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE------CS--------SSCEECCSSCEEEEEE
T ss_pred ccccccccccccceEEEEeCCCCceEEEEECCCCccc------Cc--------CCCeEEeCCCceEEEE
Confidence 3222 34666677899999999876521 10 1234679999998876
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.4e-26 Score=269.92 Aligned_cols=295 Identities=9% Similarity=0.057 Sum_probs=239.8
Q ss_pred eeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163 348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1134)
Q Consensus 348 ~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (1134)
..+..+.....+.+++|+|++ .++++++.|+.|++||+.+++...... ...+.+|.+.|.+++|+
T Consensus 114 ~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~~~~~~~v~~~~~~ 178 (433)
T 3bws_A 114 RFISRFKTGFQPKSVRFIDNT-RLAIPLLEDEGMDVLDINSGQTVRLSP--------------PEKYKKKLGFVETISIP 178 (433)
T ss_dssp EEEEEEECSSCBCCCEESSSS-EEEEEBTTSSSEEEEETTTCCEEEECC--------------CHHHHTTCCEEEEEEEG
T ss_pred eEEEEEcCCCCceEEEEeCCC-eEEEEeCCCCeEEEEECCCCeEeeecC--------------cccccccCCceeEEEEc
Confidence 556667767778899999954 578899999999999999987664211 11246799999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCC
Q 001163 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 507 (1134)
Q Consensus 428 pd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~ 507 (1134)
|+++++++++.|+.|++||+.+++.+. .+..|...+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+
T Consensus 179 ~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~- 253 (433)
T 3bws_A 179 EHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDRKTKLEIRKTDKI- 253 (433)
T ss_dssp GGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEETTTTEEEEECCCC-
T ss_pred CCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEECCCCcEEEEecCC-
Confidence 999999999999999999999987665 56689999999999999984 3456668999999999999998888765
Q ss_pred cCEEEEeccccCCccEEEEec--------CCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEE
Q 001163 508 SPVYSICPHHKENIQFIFSTA--------TDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYL 579 (1134)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s--------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 579 (1134)
..+.+++|++ ++.++++++ .|+.|++||+.+.+..... .+...+..++|+|+++.+++.+. .++.|
T Consensus 254 ~~~~~~~~~~--~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~---~~~~v 327 (433)
T 3bws_A 254 GLPRGLLLSK--DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDM---CCSKI 327 (433)
T ss_dssp SEEEEEEECT--TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEET---TTTEE
T ss_pred CCceEEEEcC--CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEec---CCCEE
Confidence 4588888865 457888877 5889999999876554443 23347889999999987766542 24579
Q ss_pred EEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeC---------------CCeEEEEEcCCCceeEEEecCCCCCC
Q 001163 580 VEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD---------------EFMIKFWDMDNVNLLASIDADGGLQA 644 (1134)
Q Consensus 580 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~ 644 (1134)
++||+.+++.+..+... ..+..++|+|+++++++++. ||.|++||..+++.+..+..+ ..
T Consensus 328 ~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~---~~ 402 (433)
T 3bws_A 328 EVYDLKEKKVQKSIPVF--DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG---NQ 402 (433)
T ss_dssp EEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS---SS
T ss_pred EEEECCCCcEEEEecCC--CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC---CC
Confidence 99999999988877633 36889999999999998875 579999999999998888752 36
Q ss_pred cceEEEcCCCcEEEEEEC-CCcEEEEEccC
Q 001163 645 SPCIRFNKEGILLAVSTN-DNGIKILANAD 673 (1134)
Q Consensus 645 v~~v~~sp~~~~l~~~~~-dg~i~iw~~~~ 673 (1134)
+.+++|+|+|++|++++. |+.|++|++..
T Consensus 403 ~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 403 PTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 889999999999988875 99999999753
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.2e-27 Score=273.61 Aligned_cols=308 Identities=11% Similarity=0.074 Sum_probs=203.6
Q ss_pred EeecCCCeeEEEE---cCCCCeEEEEEeCCCcEEEEecCCcccee-----eeceeeeeccccCc-----cccccccccCC
Q 001163 352 TLNQGSAVKSMDF---HPVQQILLVVGTNMGDVMLWEVGSRERIA-----VKSFKVWELGACSM-----PLQASLSSDYT 418 (1134)
Q Consensus 352 ~~~h~~~V~~v~f---sp~g~~lla~gs~dg~v~iwd~~~~~~~~-----~~~~~~~~~~~~~~-----~~~~~~~~~h~ 418 (1134)
.+.-+....++.| +|++..++++|. |+.|.+|+........ ...+..|....... +........|.
T Consensus 11 ~lpl~~~p~~~~w~~~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (393)
T 4gq1_A 11 QLPLNVRPYTTTWCSQSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHD 89 (393)
T ss_dssp ECCTTCCEEEEEECTTSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC---
T ss_pred EecCCCCCeEEEEeCCCCCCCCEEEEEC-CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccC
Confidence 3444556667777 456666776664 7789999874332111 11111222111000 00111234455
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceee--eeeeeecCCCCEEEEEEec--------CCCceEEEEEeCCCe
Q 001163 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELR--NHLEIEAHVGSVNDLAFSY--------PNKQLSVVTCGEDRV 488 (1134)
Q Consensus 419 ~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~--~~~~l~~h~~~V~~v~~s~--------~~~~~~l~s~s~d~~ 488 (1134)
..+....+++++.+||+|+.|++|+|||+.+++... ....+.+|.+.|++++|+| |++ +|+|||.|++
T Consensus 90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~t 167 (393)
T 4gq1_A 90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCT 167 (393)
T ss_dssp -------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSE
T ss_pred CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCe
Confidence 666666777788999999999999999999987543 2234789999999999998 677 8999999999
Q ss_pred EEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee---------------------
Q 001163 489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY--------------------- 547 (1134)
Q Consensus 489 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--------------------- 547 (1134)
|+|||+.++.++..+.+|..+|.+++|+|.. ..+|++++.|++|++||+.+.......
T Consensus 168 v~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 168 LIIWRLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp EEEEEEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred EEEEECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 9999999999888888899999999997643 258999999999999999876543221
Q ss_pred ----cCCCCCeeEEEEC-cCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEE------------------E
Q 001163 548 ----DAPGHSSTMMAYS-ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGV------------------V 604 (1134)
Q Consensus 548 ----~~~~~~v~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~------------------~ 604 (1134)
..+...+.++.|+ ++++.+++++.+ ..+++||+.+++....+..+.. .+.. .
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d----~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 321 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDGSGILAMCKS----GAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGA 321 (393)
T ss_dssp -----CCSSSCSEEEEETTTTCEEEEECTT----SEEEEEEC--------------------CCSCSEEEECSSCCSSCC
T ss_pred eeecccccccceeeeeecCCCCEEEEEeCC----CCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeE
Confidence 2344567888886 899999998764 4699999988876665554432 2222 2
Q ss_pred EEcC--CCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163 605 QFDT--TKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (1134)
Q Consensus 605 ~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 671 (1134)
.++| ++.++++|+.||.|++||..+++.......+ ...|.+++|+|+|++||+++++| +.+|.+
T Consensus 322 ~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~--~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 322 CPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQL--GMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEEC--SSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred EEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCC--CCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 3333 2335666779999999999999988877755 55899999999999999998776 555554
No 123
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=7.2e-27 Score=271.10 Aligned_cols=252 Identities=17% Similarity=0.278 Sum_probs=210.9
Q ss_pred cccCCCCEEEEEEcCC-CCEEEEEeCCCEEEEEEccCC-------ceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC
Q 001163 414 SSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGG-------DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE 485 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd-~~~las~s~dg~v~iwd~~~~-------~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~ 485 (1134)
..+|.+.|++++|+|+ +.+||+++.||.|++||+.+. ........+.+|...|.+++|+|++.. +|++|+.
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~~ 202 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSASD 202 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEECT
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEeC
Confidence 5679999999999997 789999999999999999861 112233468899999999999999876 6999999
Q ss_pred CCeEEEEECCCCce-------eEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCC---CceeeecCCCCCee
Q 001163 486 DRVIKVWDAVTGTK-------QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL---GSRVDYDAPGHSST 555 (1134)
Q Consensus 486 d~~i~iwd~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~~~v~ 555 (1134)
||.|++||+.++.. ...+.+|...|.+++|++. ++.++++++.|+.|++||++.. .....+..+...|.
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 99999999987432 4567789999999999874 3479999999999999999976 45556667888999
Q ss_pred EEEECcCCC-EEEEEecCCCCCeEEEEEeCCC-CeeEEEecCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCC--
Q 001163 556 MMAYSADGA-RLFSCGTNKEGESYLVEWNESE-GAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNV-- 630 (1134)
Q Consensus 556 ~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~-- 630 (1134)
+++|+|+++ .+++++.+ +.|++||+++ +..+..+..|.. .+.+++|+|++. .|++++.||.|++||+...
T Consensus 282 ~i~~~p~~~~~l~tg~~d----g~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSAD----KTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp EEEECSSCTTEEEEEETT----SEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred EEEeCCCCCCEEEEEeCC----CeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 999999998 57777654 4699999998 567888888876 899999999985 6889999999999999872
Q ss_pred ------------ceeEEEecCCCCCCcceEEEcCCCc-EEEEEECCCcEEEEEccCC
Q 001163 631 ------------NLLASIDADGGLQASPCIRFNKEGI-LLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 631 ------------~~~~~~~~~~~~~~v~~v~~sp~~~-~l~~~~~dg~i~iw~~~~~ 674 (1134)
+.+.... ++...|.+++|+|++. ++++++.||.|++|++...
T Consensus 357 ~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 357 EQSTEDAEDGPPELLFIHG--GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCCHHHHHHCCTTEEEECC--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccCccccccCCcceEEEcC--CCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 3444444 4467899999999998 9999999999999998754
No 124
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.2e-27 Score=295.04 Aligned_cols=260 Identities=10% Similarity=0.091 Sum_probs=216.2
Q ss_pred CCCCCeeEEEEcCCCCeEEEee-CCeEEEEEcc--CCeEEEEecCCCCCeEEEEEcCCC--CcEEEEEeCCCcEEEEEcc
Q 001163 841 NPEDAVPCFALSKNDSYVMSAS-GGKISLFNMM--TFKTMTTFMPPPPAATFLAFHPQD--NNIIAIGMEDSSIQIYNVR 915 (1134)
Q Consensus 841 ~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~--~~~~~~~~~~~~~~v~~l~~sp~~--~~~la~g~~dg~i~iwd~~ 915 (1134)
+|.+.|++++|+|+|++|++++ ||+|++||+. +++.+..+.+|.+.|++++|+| + +++|++|+.||.|++||+.
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vwd~~ 85 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEE 85 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEEEEE
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEEECC
Confidence 3999999999999999999998 9999999998 6678888999999999999998 6 8999999999999999999
Q ss_pred cce--EEEeccCccCceEEEEEeeC--CCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcC----
Q 001163 916 VDE--VKTKLKGHQKRITGLAFSNT--LNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHL---- 987 (1134)
Q Consensus 916 ~~~--~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~---- 987 (1134)
+++ .+..+.+|...|++++|+|+ ++++++++.||.|++||+.++........ .++. ..+.+++|+|
T Consensus 86 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~---~~~~---~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII---DAHA---IGVNSASWAPATIE 159 (753)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE---ECCS---SCEEEEEECCCC--
T ss_pred CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe---ecCC---CceEEEEecCcccc
Confidence 987 77888999999999999999 99999999999999999988643322222 2333 4699999999
Q ss_pred ---------CCCEEEE-EeeceEEEEeCCCccc----ceeeccCCCccCEEEEEEccC---CCEEEEEecCCcEEEeecC
Q 001163 988 ---------DQTHLLA-VHETQIAIYEAPKLEC----LKQFVPREASGPITHATYSCD---SQSIYVAFEEGSVGVLTAS 1050 (1134)
Q Consensus 988 ---------dg~~l~~-~~d~~i~iwd~~~~~~----~~~~~~~~h~~~v~~~~~s~d---g~~l~s~s~Dg~i~vwd~~ 1050 (1134)
++.++++ +.||.|++||+.++.. ...+ .+|...|++++|+|+ +++|++++.||+|++||+.
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeee--cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 5888888 5789999999987743 3334 378999999999999 9999999999999999999
Q ss_pred CCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCCCCccCCCCCC
Q 001163 1051 TLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPNE 1115 (1134)
Q Consensus 1051 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~~~~ 1115 (1134)
++........ ....+|...|+.+ +|+| ++++|++++.||.|++|++... ++|.......
T Consensus 238 ~~~~~~~~~~--~~~~~~~~~v~~l--~~sp-dg~~l~s~s~Dg~I~vwd~~~~-~~~~~~~~~~ 296 (753)
T 3jro_A 238 NEQGPWKKTL--LKEEKFPDVLWRA--SWSL-SGNVLALSGGDNKVTLWKENLE-GKWEPAGEVH 296 (753)
T ss_dssp SSSSCCBCCB--SSSSCCSSCCCCE--EECT-TTCCEEEECSSSCEECCBCCSS-SCCBCCCCBC
T ss_pred CCCCcceeEE--eccCCCCCceEEE--EEcC-CCCEEEEEcCCCEEEEEecCCC-CCcccccccc
Confidence 8753222111 1123477888877 7889 7899999999999999999854 4566554333
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-27 Score=268.52 Aligned_cols=198 Identities=11% Similarity=0.110 Sum_probs=158.8
Q ss_pred CCCCeeEEEEcC--CCCeEEEee-CCeEEEEEccCCeEEEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccc
Q 001163 842 PEDAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFKTMTTFMP-PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD 917 (1134)
Q Consensus 842 h~~~v~~v~~s~--dg~~la~~s-dg~i~lwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~ 917 (1134)
|...|.+++|+| +++++++++ ||+|++||+.+++.+..... +...+++++|+| ++.+||+|+.||.|++||+.++
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSP 202 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCT
T ss_pred CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCC
Confidence 677899999999 999999998 99999999999998777644 455799999999 8999999999999999999999
Q ss_pred eEE-EeccC-ccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCc--eEEEEcCCCCEEE
Q 001163 918 EVK-TKLKG-HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALAD--TRVQFHLDQTHLL 993 (1134)
Q Consensus 918 ~~~-~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v--~~l~fs~dg~~l~ 993 (1134)
+.+ ..+.+ |.++|++++|+|++.+|++++. ++|++||+.+++... .+.....+. ..+ .+++|+|+|++|+
T Consensus 203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 203 DQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTL--AYPTYTIPE---FKTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp TSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCB--SSCCCBC--------CCEEEEECTTSSEEE
T ss_pred CCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcce--eeccccccc---ccccceEEEECCCCCEEE
Confidence 877 78888 9999999999999999999994 599999998865322 111111111 112 4799999999999
Q ss_pred EE-e-eceEEEEeCCCcccceeeccCCCccCEEEEEEcc---CCCEEEEEecCCcEEEeecCCC
Q 001163 994 AV-H-ETQIAIYEAPKLECLKQFVPREASGPITHATYSC---DSQSIYVAFEEGSVGVLTASTL 1052 (1134)
Q Consensus 994 ~~-~-d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~---dg~~l~s~s~Dg~i~vwd~~~~ 1052 (1134)
++ . |+.+++|++.+....... ..+..++|++ +++.|++++.|+.+.++-....
T Consensus 277 ~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp EEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred EecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEEecCCceEEEEecCC
Confidence 94 4 899999999765533222 5678888998 9999999999999998865443
No 126
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.2e-26 Score=269.02 Aligned_cols=242 Identities=13% Similarity=0.081 Sum_probs=202.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeee--------------------------------------
Q 001163 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE-------------------------------------- 460 (1134)
Q Consensus 419 ~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~-------------------------------------- 460 (1134)
.++.+++|+|||++|+++ .++.|++||+.+|+.......+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 488999999999976666 57789999999998222111222
Q ss_pred ----------------cCCCCEEEEEEecCCCceE-EEEEeCCCeEEEEECC--CCceeEEec--CCCcCEEEEeccccC
Q 001163 461 ----------------AHVGSVNDLAFSYPNKQLS-VVTCGEDRVIKVWDAV--TGTKQYIFE--GHESPVYSICPHHKE 519 (1134)
Q Consensus 461 ----------------~h~~~V~~v~~s~~~~~~~-l~s~s~d~~i~iwd~~--~~~~~~~~~--~h~~~v~~~~~~~~~ 519 (1134)
+|.+.|++++|+|+++ + +++++.|+.|++||+. +++.+..+. .|...|.+++|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-- 159 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES--RLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-- 159 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSS--EEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCC--EEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--
Confidence 3455799999999999 5 4899999999999999 888888886 5678999999965
Q ss_pred CccEEEEecCCCcEEEEecCCCCcee----eecCCCCCeeEEEECcC---CCEEEEEecCCCCCeEEEEEeCCCCeeEEE
Q 001163 520 NIQFIFSTATDGKIKAWLYDNLGSRV----DYDAPGHSSTMMAYSAD---GARLFSCGTNKEGESYLVEWNESEGAVKRT 592 (1134)
Q Consensus 520 ~~~~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~~~v~~~~~s~~---~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 592 (1134)
++.+|++++.||.|++|++....... .+..|...|.+++|+|+ +++|++++.++ .|++||+.+++.+..
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~----~i~vwd~~~~~~~~~ 235 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE----HIKISHYPQCFIVDK 235 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS----CEEEEEESCTTCEEE
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCC----cEEEEECCCCceeee
Confidence 45899999999999999998766543 55667789999999999 99999998654 599999999998887
Q ss_pred ec-CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC-----------------------CCCCCcceE
Q 001163 593 YH-GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD-----------------------GGLQASPCI 648 (1134)
Q Consensus 593 ~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~~v 648 (1134)
+. +|.. .|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+ .....|.++
T Consensus 236 ~~~~h~~-~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 313 (450)
T 2vdu_B 236 WLFGHKH-FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI 313 (450)
T ss_dssp ECCCCSS-CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred eecCCCC-ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence 44 6655 89999999 9999999999999999999999988887632 123468899
Q ss_pred EEcCCCcEEEEEE-CCCcEEEEEc
Q 001163 649 RFNKEGILLAVST-NDNGIKILAN 671 (1134)
Q Consensus 649 ~~sp~~~~l~~~~-~dg~i~iw~~ 671 (1134)
+|+|+++++++++ .++.|++|++
T Consensus 314 ~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 314 IKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEeCCCCEEEEEECCCCeEEEEEe
Confidence 9999999999999 8999999998
No 127
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.8e-27 Score=262.63 Aligned_cols=270 Identities=8% Similarity=0.038 Sum_probs=212.6
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEE
Q 001163 363 DFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIV 442 (1134)
Q Consensus 363 ~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v 442 (1134)
.+.+++. ++++|+.||+|++||+.+++.+... . ...|.+++|+|+ +++++.|++|
T Consensus 43 ~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~~-------------------~--~~~v~~~~~~~~---~~s~s~D~~i 97 (343)
T 3lrv_A 43 SMYYDKW-VCMCRCEDGALHFTQLKDSKTITTI-------------------T--TPNPRTGGEHPA---IISRGPCNRL 97 (343)
T ss_dssp SSSEEEE-EEEEEEETTEEEEEEESSSSCEEEE-------------------E--EECCCTTCCCCS---EEEECSTTEE
T ss_pred hhcCCCC-EEEEECCCCcEEEEECCCCcEEEEE-------------------e--cCCceeeeeCCc---eEEecCCCeE
Confidence 3445666 6799999999999999999876531 1 357778889988 9999999999
Q ss_pred EEEEcc---------CCceeeeeeeeecCCCCEEEEEEec--CCCceEEEEEeCCCeEEEEECCCCceeEEec-CCCcCE
Q 001163 443 HLYTYH---------GGDELRNHLEIEAHVGSVNDLAFSY--PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE-GHESPV 510 (1134)
Q Consensus 443 ~iwd~~---------~~~~~~~~~~l~~h~~~V~~v~~s~--~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~h~~~v 510 (1134)
++|+.. +++.+.. ...+|.+.|.+++|+| +++ ++++++.|++|++||+.+++.+..+. .|...|
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i 173 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEY 173 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCCC
T ss_pred EEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCce
Confidence 999765 3332321 1236778999999999 998 89999999999999999999977664 456689
Q ss_pred EEEeccccCCccEEEEecCCCcEEEEecCCCCce-eeecC-CCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe
Q 001163 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR-VDYDA-PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 588 (1134)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 588 (1134)
.+++|++ ++.+|++|+.||.|++||+++.... ..+.. |...|.+++|+|++.+|++++.+ .|++||+++++
T Consensus 174 ~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-----~v~iwd~~~~~ 246 (343)
T 3lrv_A 174 SSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-----TVVCFDLRKDV 246 (343)
T ss_dssp CEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-----BEEEEETTSST
T ss_pred EEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-----eEEEEEcCCCC
Confidence 9999965 5589999999999999999988877 66777 88899999999999999999832 59999999987
Q ss_pred eEEEecCCCC--Cce--EEEEEcCCCCEEEEEeC-CCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC---CCcEEEEE
Q 001163 589 VKRTYHGLGK--RSV--GVVQFDTTKNRFLAAGD-EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK---EGILLAVS 660 (1134)
Q Consensus 589 ~~~~~~~~~~--~~v--~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp---~~~~l~~~ 660 (1134)
.+..+..+.. ..+ .+++|+|++++|++++. |+.|++|++.+....... ..+..++|.+ +...++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~ 320 (343)
T 3lrv_A 247 GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVV 320 (343)
T ss_dssp TCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEE
T ss_pred cceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEE
Confidence 7655543111 123 36999999999999997 999999999776544333 2456778888 88899999
Q ss_pred ECCCcEEEEEccCC
Q 001163 661 TNDNGIKILANADG 674 (1134)
Q Consensus 661 ~~dg~i~iw~~~~~ 674 (1134)
+.||.+.++-....
T Consensus 321 ~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 321 CGDGGIAAILKTND 334 (343)
T ss_dssp EETTEEEEEEECSS
T ss_pred ecCCceEEEEecCC
Confidence 99999998865443
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=1.4e-24 Score=257.05 Aligned_cols=276 Identities=13% Similarity=0.123 Sum_probs=215.7
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEE
Q 001163 363 DFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIV 442 (1134)
Q Consensus 363 ~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v 442 (1134)
+|+|++. ++++++.|++|.+||..+++.+... -.++. +.+++|||||++|++++.|++|
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~i------------------~~g~~--~~~v~~spdg~~l~v~~~d~~V 202 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKVI------------------DTGYA--VHISRMSASGRYLLVIGRDARI 202 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEEE------------------ECSTT--EEEEEECTTSCEEEEEETTSEE
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCCceEEEEE------------------ecCcc--cceEEECCCCCEEEEECCCCeE
Confidence 3788886 7789999999999999999876531 12343 8999999999999999999999
Q ss_pred EEEEc--cCCceeeeeeeeecCCCCEEEEEEec----CCCceEEEEEe-CCCeEEEEECCCCceeEEecCC---------
Q 001163 443 HLYTY--HGGDELRNHLEIEAHVGSVNDLAFSY----PNKQLSVVTCG-EDRVIKVWDAVTGTKQYIFEGH--------- 506 (1134)
Q Consensus 443 ~iwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~----~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~h--------- 506 (1134)
.+||+ .+++.+. .+. +...+..++|+| ||+ ++++++ .+++|.+||..+++++.++..+
T Consensus 203 ~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~ 276 (543)
T 1nir_A 203 DMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY 276 (543)
T ss_dssp EEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE
T ss_pred EEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCcccc
Confidence 99999 7777655 454 445689999999 999 666666 5899999999999999888652
Q ss_pred --CcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCcee--eecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEE
Q 001163 507 --ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV--DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW 582 (1134)
Q Consensus 507 --~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 582 (1134)
...+.++.++++.. .++++...++.|.+||+.+.+... .+ .....+..++|+|+|+++++++.. +..|.+|
T Consensus 277 ~~~~~v~~i~~s~~~~-~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~---~~~v~v~ 351 (543)
T 1nir_A 277 HPEPRVAAIIASHEHP-EFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANN---SNKVAVI 351 (543)
T ss_dssp ESCCCEEEEEECSSSS-EEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGG---GTEEEEE
T ss_pred ccCCceEEEEECCCCC-EEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecC---CCeEEEE
Confidence 23688888876443 678888999999999998765433 22 234567889999999988776532 3469999
Q ss_pred eCCCCeeEEEecC----CCCCceEEEEEcCC-CCEEEEEe-CCCeEEEEEcCC-------CceeEEEecCCCCCCcceEE
Q 001163 583 NESEGAVKRTYHG----LGKRSVGVVQFDTT-KNRFLAAG-DEFMIKFWDMDN-------VNLLASIDADGGLQASPCIR 649 (1134)
Q Consensus 583 d~~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~v~ 649 (1134)
|..+++++..+.. |.. ....+ ++|+ +..++++. .|++|.+||..+ .+.+..+..++ ..+..++
T Consensus 352 D~~tg~l~~~i~~g~~ph~g-~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g--~~~~~v~ 427 (543)
T 1nir_A 352 DSKDRRLSALVDVGKTPHPG-RGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG--GGSLFIK 427 (543)
T ss_dssp ETTTTEEEEEEECSSSBCCT-TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC--SCCCCEE
T ss_pred ECCCCeEEEeeccCCCCCCC-CCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC--CCceEEE
Confidence 9999999988875 322 22222 4677 55555554 689999999998 88999998764 4678899
Q ss_pred EcCCCcEEEEEE-------CCCcEEEEEccCC
Q 001163 650 FNKEGILLAVST-------NDNGIKILANADG 674 (1134)
Q Consensus 650 ~sp~~~~l~~~~-------~dg~i~iw~~~~~ 674 (1134)
++|++++|++++ .+++|.+||+.++
T Consensus 428 ~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 428 THPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp CCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred cCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 999999999987 2679999998876
No 129
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=1.7e-26 Score=264.11 Aligned_cols=247 Identities=9% Similarity=-0.024 Sum_probs=174.8
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC------
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP------ 428 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp------ 428 (1134)
|...+....+++++. ++|+|+.|++|+|||..+++......+ ..+.||.+.|++++|+|
T Consensus 88 ~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~--------------~~~~gH~~~v~~v~~~p~~~~~~ 152 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVL--------------GGKSGHHNFVNDIDIADVYSADN 152 (393)
T ss_dssp ---------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEE--------------CTTTSCSSCEEEEEEEEEECTTC
T ss_pred cCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeee--------------cccCCCCCceEEEEEcccccccc
Confidence 444444455555665 779999999999999998875442111 23789999999999998
Q ss_pred --CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEE----
Q 001163 429 --DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI---- 502 (1134)
Q Consensus 429 --d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~---- 502 (1134)
|+++||+|+.|++|+|||+.++.... .+.+|...|.+++|+|++.. +|++++.|++|++||+.+++....
T Consensus 153 ~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~~ 228 (393)
T 4gq1_A 153 RLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQT 228 (393)
T ss_dssp SEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC--------
T ss_pred CCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCccccccccc
Confidence 89999999999999999999877554 56779999999999998865 699999999999999998765432
Q ss_pred ---------------------ecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeE-----
Q 001163 503 ---------------------FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM----- 556 (1134)
Q Consensus 503 ---------------------~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~----- 556 (1134)
..+|...|.++.|. .+++..|++++.|+++++||+........+..+...+..
T Consensus 229 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~-~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~ 307 (393)
T 4gq1_A 229 ELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI-GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLP 307 (393)
T ss_dssp --CSCCCSEEEESGGGC------CCSSSCSEEEEE-TTTTCEEEEECTTSEEEEEEC-------------------CCSC
T ss_pred CCcccceEEecccccceeeeecccccccceeeeee-cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcc
Confidence 23577788888875 356789999999999999999766544443333222222
Q ss_pred -------------EEEC-cCCCE-EEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCe
Q 001163 557 -------------MAYS-ADGAR-LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM 621 (1134)
Q Consensus 557 -------------~~~s-~~~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 621 (1134)
..++ +.+.. +++++. ++.|++||..+++....+..+.. .|.+++|+|+|++|++++++|
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~----Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafspdG~~LA~as~~G- 381 (393)
T 4gq1_A 308 NVQGISLFPSLLGACPHPRYMDYFATAHSQ----HGLIQLINTYEKDSNSIPIQLGM-PIVDFCWHQDGSHLAIATEGS- 381 (393)
T ss_dssp SEEEECSSCCSSCCEECSSCTTEEEEEETT----TTEEEEEETTCTTCCEEEEECSS-CEEEEEECTTSSEEEEEESSE-
T ss_pred ccccccccCcceeEEEccCCCCEEEEEECC----CCEEEEEECCCCcEEEEecCCCC-cEEEEEEcCCCCEEEEEeCCC-
Confidence 2233 33344 444443 45699999999998888888776 899999999999999998766
Q ss_pred EEEEEc
Q 001163 622 IKFWDM 627 (1134)
Q Consensus 622 i~iwd~ 627 (1134)
+.+|.+
T Consensus 382 v~lvrL 387 (393)
T 4gq1_A 382 VLLTRL 387 (393)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 556654
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=3.9e-25 Score=261.72 Aligned_cols=340 Identities=11% Similarity=0.111 Sum_probs=255.3
Q ss_pred ECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEc--CCCceeEEE
Q 001163 559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDM--DNVNLLASI 636 (1134)
Q Consensus 559 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~ 636 (1134)
++|++..+++++. ++.|.+||..+++++.++.... .+..++|+|+++++++++.|+.|++||+ .+++.+..+
T Consensus 145 ~~p~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g~--~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i 218 (543)
T 1nir_A 145 LDLPNLFSVTLRD----AGQIALVDGDSKKIVKVIDTGY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI 218 (543)
T ss_dssp CCGGGEEEEEEGG----GTEEEEEETTTCCEEEEEECST--TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred cCCCCEEEEEEcC----CCeEEEEECCCceEEEEEecCc--ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence 7888887777654 3469999999999999988544 3788999999999999999999999999 888888888
Q ss_pred ecCCCCCCcceEEEcC----CCcEEEEEEC-CCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccc
Q 001163 637 DADGGLQASPCIRFNK----EGILLAVSTN-DNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANAN 711 (1134)
Q Consensus 637 ~~~~~~~~v~~v~~sp----~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1134)
... ..+..++|+| +|+++++++. +++|.+||..++ +.++.+..+.....
T Consensus 219 ~~g---~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~-~~~~~i~~~g~~~~---------------------- 272 (543)
T 1nir_A 219 KIG---IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTVD---------------------- 272 (543)
T ss_dssp ECC---SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEECSS----------------------
T ss_pred ecC---CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc-ccceeecccCcccC----------------------
Confidence 742 3568999999 9999998884 899999998877 44444432110000
Q ss_pred cccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccc-cccEEEEEEecCCce
Q 001163 712 VGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLT-AMRVSRLIYTNSGLA 790 (1134)
Q Consensus 712 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~spdg~~ 790 (1134)
.. ..| ...+.++.++|++..
T Consensus 273 ---------------------------------------------------~~--------~~~~~~~v~~i~~s~~~~~ 293 (543)
T 1nir_A 273 ---------------------------------------------------TQ--------TYHPEPRVAAIIASHEHPE 293 (543)
T ss_dssp ---------------------------------------------------SC--------CEESCCCEEEEEECSSSSE
T ss_pred ---------------------------------------------------cc--------ccccCCceEEEEECCCCCE
Confidence 00 002 236889999997765
Q ss_pred -eeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee--CCeEE
Q 001163 791 -ILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKIS 867 (1134)
Q Consensus 791 -l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s--dg~i~ 867 (1134)
+++...++.|.+|++..... -.... + .+...+..++|+|||+++++++ +++|.
T Consensus 294 ~~vs~~~~g~i~vvd~~~~~~-------------------l~~~~--i---~~~~~~~~~~~spdg~~l~va~~~~~~v~ 349 (543)
T 1nir_A 294 FIVNVKETGKVLLVNYKDIDN-------------------LTVTS--I---GAAPFLHDGGWDSSHRYFMTAANNSNKVA 349 (543)
T ss_dssp EEEEETTTTEEEEEECTTSSS-------------------CEEEE--E---ECCSSCCCEEECTTSCEEEEEEGGGTEEE
T ss_pred EEEEECCCCeEEEEEecCCCc-------------------ceeEE--e---ccCcCccCceECCCCCEEEEEecCCCeEE
Confidence 45556689999998763210 00000 1 1345577899999999877664 78999
Q ss_pred EEEccCCeEEEEecC----CCCCeEEEEEcCCCCcEEEEEe-CCCcEEEEEccc-------ceEEEeccCccCceEEEEE
Q 001163 868 LFNMMTFKTMTTFMP----PPPAATFLAFHPQDNNIIAIGM-EDSSIQIYNVRV-------DEVKTKLKGHQKRITGLAF 935 (1134)
Q Consensus 868 lwd~~~~~~~~~~~~----~~~~v~~l~~sp~~~~~la~g~-~dg~i~iwd~~~-------~~~~~~l~~h~~~V~~l~~ 935 (1134)
+||+.+++++..+.. |.+....+ ++|+++.+++++. .|++|.+||+.+ +++++++.+|.+.+..++|
T Consensus 350 v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~ 428 (543)
T 1nir_A 350 VIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKT 428 (543)
T ss_dssp EEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC
T ss_pred EEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEc
Confidence 999999999988874 54444443 5774577788875 689999999998 8999999999998999999
Q ss_pred eeCCCEEEEEe-------CCCcEEEEECCCCccccceeeeecC--CCCCCCCCceEEEEcCCCCEEEEE------eeceE
Q 001163 936 SNTLNVLVSSG-------ADSQLCVWSTDGWEKQASKFLTIPN--GRTASALADTRVQFHLDQTHLLAV------HETQI 1000 (1134)
Q Consensus 936 s~d~~~l~s~s-------~Dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~v~~l~fs~dg~~l~~~------~d~~i 1000 (1134)
+|++++|++++ .+++|.+||+.+++... ..+.+.. +.......+..+.|+|||+.|+++ .++.|
T Consensus 429 ~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i 507 (543)
T 1nir_A 429 HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKY-QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSAL 507 (543)
T ss_dssp CTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCC-EEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEE
T ss_pred CCCCCcEEEecCCCCCcccCceEEEEECCCCCCCe-EEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeE
Confidence 99999999987 27799999999977431 2222210 000111458899999999999975 26899
Q ss_pred EEEeCCCcccceeec
Q 001163 1001 AIYEAPKLECLKQFV 1015 (1134)
Q Consensus 1001 ~iwd~~~~~~~~~~~ 1015 (1134)
.|||.++++++..+.
T Consensus 508 ~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 508 VVVDDKTLKLKAVVK 522 (543)
T ss_dssp EEEETTTTEEEEEEC
T ss_pred EEEECCCceEEEeec
Confidence 999999999988876
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=6e-24 Score=244.22 Aligned_cols=284 Identities=10% Similarity=0.041 Sum_probs=220.1
Q ss_pred CCeeEEEEcCCCCeEEEEEe----CCC----cEEEEec--CCccceeeeceeeeeccccCccccccccccCCCCEEEEEE
Q 001163 357 SAVKSMDFHPVQQILLVVGT----NMG----DVMLWEV--GSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (1134)
Q Consensus 357 ~~V~~v~fsp~g~~lla~gs----~dg----~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 426 (1134)
..|...+|++.|..++++|+ .|| .|+|||+ .+++.+.... +.+|...+..+++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 125 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYAGH 125 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHHHH
Confidence 46778889999988888886 467 8999999 8887664322 4567777777777
Q ss_pred cC--------------CCCEEEEEeCC------CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC
Q 001163 427 SP--------------DGTLFGVAYSK------HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED 486 (1134)
Q Consensus 427 sp--------------d~~~las~s~d------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d 486 (1134)
++ .+..++.++.+ +.|++||+.++. .+ .+.+|...|.+++|+|||+ .|++++.|
T Consensus 126 ~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~~ 199 (415)
T 2hqs_A 126 TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTFE 199 (415)
T ss_dssp HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEECT
T ss_pred HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEec
Confidence 65 26677776654 799999998543 33 5778999999999999999 78888887
Q ss_pred C---eEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEE-EecCCCc--EEEEecCCCCceeeecCCCCCeeEEEEC
Q 001163 487 R---VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIF-STATDGK--IKAWLYDNLGSRVDYDAPGHSSTMMAYS 560 (1134)
Q Consensus 487 ~---~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s 560 (1134)
+ .|++||+.+++.. .+..|...+.+++|+| +|+.|+ +++.|+. |++||+.+.+. ..+..+...+.+++|+
T Consensus 200 ~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s 275 (415)
T 2hqs_A 200 SGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF 275 (415)
T ss_dssp TSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC
T ss_pred CCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC
Confidence 5 9999999998875 4667888999999965 446666 6766665 99999987654 4555666789999999
Q ss_pred cCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCceeEEEe
Q 001163 561 ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE---FMIKFWDMDNVNLLASID 637 (1134)
Q Consensus 561 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~ 637 (1134)
|||++|++++.+ ++...|++||+.+++.. .+..+.. .+..++|+|+|++|++++.+ +.|++||+.+++.. .+.
T Consensus 276 pdg~~l~~~s~~-~g~~~i~~~d~~~~~~~-~l~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~ 351 (415)
T 2hqs_A 276 PDSQNLAFTSDQ-AGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS 351 (415)
T ss_dssp TTSSEEEEEECT-TSSCEEEEEETTSSCCE-ECCCSSS-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC
T ss_pred CCCCEEEEEECC-CCCcEEEEEECCCCCEE-EEecCCC-cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec
Confidence 999999988743 34557999999988753 3444433 78889999999999988853 58999999988764 343
Q ss_pred cCCCCCCcceEEEcCCCcEEEEEECCC---cEEEEEccCC
Q 001163 638 ADGGLQASPCIRFNKEGILLAVSTNDN---GIKILANADG 674 (1134)
Q Consensus 638 ~~~~~~~v~~v~~sp~~~~l~~~~~dg---~i~iw~~~~~ 674 (1134)
.+ . .+.+++|+|+|++|++++.++ .|++|++..+
T Consensus 352 ~~--~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 352 ST--F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp CS--S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred CC--C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 32 2 788999999999999988776 7888887643
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=3.2e-23 Score=259.34 Aligned_cols=303 Identities=12% Similarity=0.048 Sum_probs=211.5
Q ss_pred CCeeEEEEcCCCCeEEEEEeC-CC-----cEEEEecCCccceeeeceeeee-----ccccCccccccccccCCCCEEEEE
Q 001163 357 SAVKSMDFHPVQQILLVVGTN-MG-----DVMLWEVGSRERIAVKSFKVWE-----LGACSMPLQASLSSDYTASVNRVM 425 (1134)
Q Consensus 357 ~~V~~v~fsp~g~~lla~gs~-dg-----~v~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~h~~~V~~l~ 425 (1134)
..|.+++|||||++| ++++. |+ .|++||+.+++........-.. +...........-......|.+++
T Consensus 37 ~~~~~~~~SpdG~~l-a~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRV-TFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCEEEEECTTSSEE-EEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCceEecCCCEE-EEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 468899999999965 56665 88 8999999998754421100000 000000000000000013488999
Q ss_pred EcCCCCEEEEEeCCCEEEEEEccCCc--eeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe
Q 001163 426 WSPDGTLFGVAYSKHIVHLYTYHGGD--ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF 503 (1134)
Q Consensus 426 ~spd~~~las~s~dg~v~iwd~~~~~--~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 503 (1134)
|||||++|++++. +.|++||+.++. ... .+..|...+.+++|||||+ +|+.++ ++.|++||+.+++.....
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEECC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEec
Confidence 9999999999987 899999999872 233 3667888999999999999 677776 469999999998877655
Q ss_pred cCCCcC----------------EEEEeccccCCccEEEEecCCC---------------------------------cEE
Q 001163 504 EGHESP----------------VYSICPHHKENIQFIFSTATDG---------------------------------KIK 534 (1134)
Q Consensus 504 ~~h~~~----------------v~~~~~~~~~~~~~l~s~s~dg---------------------------------~i~ 534 (1134)
..+... +.+++|+ +||++|++++.|+ .|.
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~S--pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWA--PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEEC--TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEEC--CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 544433 3567775 5568888887665 788
Q ss_pred EEecCC-CCceeeec--CCCCCeeEEEECcCCCEEEEEecC-CCCCeEEEEEeCCCCeeEEEecCCCCC---ceEEEEEc
Q 001163 535 AWLYDN-LGSRVDYD--APGHSSTMMAYSADGARLFSCGTN-KEGESYLVEWNESEGAVKRTYHGLGKR---SVGVVQFD 607 (1134)
Q Consensus 535 vwd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~-~~~~~~i~~wd~~~~~~~~~~~~~~~~---~v~~~~~~ 607 (1134)
+||+.+ ++...... .+...+..++| |||++|++.+.+ ...+..|++||+.+++....+..+... .+..++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 899887 66544332 24457899999 999999987652 234677999999999887777665432 23578999
Q ss_pred CCCCEEEEEeCCCeEEEEEcC-CCceeEEEecCCCCCCcceE-EEcCCCcEEEEE-ECCC--cEEEEEccC
Q 001163 608 TTKNRFLAAGDEFMIKFWDMD-NVNLLASIDADGGLQASPCI-RFNKEGILLAVS-TNDN--GIKILANAD 673 (1134)
Q Consensus 608 ~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~sp~~~~l~~~-~~dg--~i~iw~~~~ 673 (1134)
|||+++++++.+|.+.+|.++ ++. ...+..+ ...+..+ .|+|+|+.|+.. +.++ .+++|++..
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred CCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 999988888899988888765 344 5555433 4456666 599999877654 4454 888998754
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=3e-23 Score=238.41 Aligned_cols=307 Identities=14% Similarity=0.132 Sum_probs=227.1
Q ss_pred CCCCEEEEEEecCCCceEEEEEe----CCC----eEEEEEC--CCCcee--EEecCCCcCEEEEecccc-----------
Q 001163 462 HVGSVNDLAFSYPNKQLSVVTCG----EDR----VIKVWDA--VTGTKQ--YIFEGHESPVYSICPHHK----------- 518 (1134)
Q Consensus 462 h~~~V~~v~~s~~~~~~~l~s~s----~d~----~i~iwd~--~~~~~~--~~~~~h~~~v~~~~~~~~----------- 518 (1134)
+...+...+|.+.|.. ++++|+ .|| .+++||+ .+++++ ..+.+|...+..+++.+.
T Consensus 61 ~~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~ 139 (415)
T 2hqs_A 61 SAQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK 139 (415)
T ss_dssp SGGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred cccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCC
Confidence 3356788899999887 677776 467 8999999 999987 458889888877766531
Q ss_pred -CCccEEEEecCC------CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEE
Q 001163 519 -ENIQFIFSTATD------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR 591 (1134)
Q Consensus 519 -~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 591 (1134)
..+..++.++.+ +.|++||++. .....+..+...+.+++|+|||++|++++.++ +...|++||+.+++...
T Consensus 140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~~ 217 (415)
T 2hqs_A 140 GAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVRQ 217 (415)
T ss_dssp CCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEEE
T ss_pred CcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEEE
Confidence 013456555544 7999999974 44555666777899999999999999988653 34679999999988754
Q ss_pred EecCCCCCceEEEEEcCCCCEEE-EEeCCC--eEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEEC-CC--c
Q 001163 592 TYHGLGKRSVGVVQFDTTKNRFL-AAGDEF--MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTN-DN--G 665 (1134)
Q Consensus 592 ~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~-dg--~ 665 (1134)
+..+.. .+.+++|+|+|+.|+ +++.++ .|++||+.+++. ..+.. +...+.+++|+|+|++|++++. ++ .
T Consensus 218 -l~~~~~-~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~--~~~~~~~~~~spdg~~l~~~s~~~g~~~ 292 (415)
T 2hqs_A 218 -VASFPR-HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTD--GRSNNTEPTWFPDSQNLAFTSDQAGRPQ 292 (415)
T ss_dssp -EECCSS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCC--CSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred -eecCCC-cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcC--CCCcccceEECCCCCEEEEEECCCCCcE
Confidence 555544 789999999999888 555555 499999998876 34443 3557889999999999988876 44 4
Q ss_pred EEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccc
Q 001163 666 IKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIAD 745 (1134)
Q Consensus 666 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (1134)
|++|++.++. . ..
T Consensus 293 i~~~d~~~~~-~-~~----------------------------------------------------------------- 305 (415)
T 2hqs_A 293 VYKVNINGGA-P-QR----------------------------------------------------------------- 305 (415)
T ss_dssp EEEEETTSSC-C-EE-----------------------------------------------------------------
T ss_pred EEEEECCCCC-E-EE-----------------------------------------------------------------
Confidence 5555554331 0 00
Q ss_pred ccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCccc
Q 001163 746 EAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLW 825 (1134)
Q Consensus 746 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 825 (1134)
T Consensus 306 -------------------------------------------------------------------------------- 305 (415)
T 2hqs_A 306 -------------------------------------------------------------------------------- 305 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-C---CeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEE
Q 001163 826 QPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIA 901 (1134)
Q Consensus 826 d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-d---g~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la 901 (1134)
+. .+...+..++|+|||++|++++ + ..|++||+.+++.. .+..+. .+.+++|+| ++++|+
T Consensus 306 -----------l~--~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~ 369 (415)
T 2hqs_A 306 -----------IT--WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVI 369 (415)
T ss_dssp -----------CC--CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEE
T ss_pred -----------Ee--cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEE
Confidence 00 0233455677777777777665 3 46999999888764 455454 899999999 889888
Q ss_pred EEeCCC---cEEEEEcccceEEEeccCccCceEEEEEeeCCC
Q 001163 902 IGMEDS---SIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLN 940 (1134)
Q Consensus 902 ~g~~dg---~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 940 (1134)
+++.++ .|++||+. ++....+.+|.+.|.+++|+|.-.
T Consensus 370 ~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 370 YSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred EEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 888777 79999987 556778999999999999998654
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=3.4e-22 Score=250.08 Aligned_cols=245 Identities=9% Similarity=0.002 Sum_probs=185.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeC-CC-----EEEEEEccCCceeeeeeeeecCC------------------------CCEE
Q 001163 418 TASVNRVMWSPDGTLFGVAYS-KH-----IVHLYTYHGGDELRNHLEIEAHV------------------------GSVN 467 (1134)
Q Consensus 418 ~~~V~~l~~spd~~~las~s~-dg-----~v~iwd~~~~~~~~~~~~l~~h~------------------------~~V~ 467 (1134)
...|.+++|||||++|++++. |+ .|++||+.+++... .+..|. ..|.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL---LVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE---EECGGGTC--------------------CCEESC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE---ccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 457999999999999999998 88 89999999987543 233332 2388
Q ss_pred EEEEecCCCceEEEEEeCCCeEEEEECCCCc--eeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCcee
Q 001163 468 DLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT--KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV 545 (1134)
Q Consensus 468 ~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~ 545 (1134)
+++|||||+ +|++++. +.|++||+.++. .+..+..|...+.+++|+| ||++|+.++ ++.|++||+.++....
T Consensus 113 ~~~~SpDg~--~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP--DG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 113 DYQWSPDAQ--RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP--KGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CCEECTTSS--EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT--TSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred eeEECCCCC--EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC--CCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 999999999 6777776 999999998883 4556777888899999865 558888887 4699999998755443
Q ss_pred eecCCCCC----------------eeEEEECcCCCEEEEEecCCC-----------------------------CCeEEE
Q 001163 546 DYDAPGHS----------------STMMAYSADGARLFSCGTNKE-----------------------------GESYLV 580 (1134)
Q Consensus 546 ~~~~~~~~----------------v~~~~~s~~~~~l~~~~~~~~-----------------------------~~~~i~ 580 (1134)
....+... +..++|||||++|++++.++. ....|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 33322221 478999999999999875431 123789
Q ss_pred EEeCCC-CeeEEEecC-CCCCceEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCceeEEEecCCCC--CCcceEEEc
Q 001163 581 EWNESE-GAVKRTYHG-LGKRSVGVVQFDTTKNRFLAAGD-----EFMIKFWDMDNVNLLASIDADGGL--QASPCIRFN 651 (1134)
Q Consensus 581 ~wd~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~--~~v~~v~~s 651 (1134)
+||+.+ ++....... .....+..++| |||++|++++. +..|++||+.+++....+..+... ..+..++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999998 876655433 22337889999 99999997753 578999999999887776543211 135688999
Q ss_pred CCCcEEEEEECCCcEEEEEcc
Q 001163 652 KEGILLAVSTNDNGIKILANA 672 (1134)
Q Consensus 652 p~~~~l~~~~~dg~i~iw~~~ 672 (1134)
|||+++++++.||.++||.+.
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEEC
T ss_pred CCCeEEEEecCCCccEEEEEc
Confidence 999988888888888888654
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=5.7e-23 Score=256.40 Aligned_cols=287 Identities=11% Similarity=0.079 Sum_probs=209.2
Q ss_pred CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCC---CEEEEEEcCCCCEEE
Q 001163 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTA---SVNRVMWSPDGTLFG 434 (1134)
Q Consensus 358 ~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spd~~~la 434 (1134)
.+.+++|||||++ +++ +.||+|++||+.+++.... +.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~~-~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTEF-IYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSCB-CCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCcE-EEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence 3568899999994 455 7899999999999876442 344544 499999999999999
Q ss_pred EEeCC---------CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecC
Q 001163 435 VAYSK---------HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 505 (1134)
Q Consensus 435 s~s~d---------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 505 (1134)
+++.+ +.|.+||+.+++. .......+|...+..++|||||+ .|+.++. +.|++||+.+++.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99874 7889999999875 32223345666699999999999 5777775 7999999999988776665
Q ss_pred CCcCE------------------EEEeccccCCccEEEEecCCC----------------------------------cE
Q 001163 506 HESPV------------------YSICPHHKENIQFIFSTATDG----------------------------------KI 533 (1134)
Q Consensus 506 h~~~v------------------~~~~~~~~~~~~~l~s~s~dg----------------------------------~i 533 (1134)
+...+ .+++|+ +||+.|++++.|+ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~S--pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWS--PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEEC--TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEEC--CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44433 678875 4558888877543 79
Q ss_pred EEEecCCCCceeeecCC------CCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCce----EE
Q 001163 534 KAWLYDNLGSRVDYDAP------GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSV----GV 603 (1134)
Q Consensus 534 ~vwd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v----~~ 603 (1134)
++||+.+.+....+..+ ...+..++|+|||+++++..........|++||+.+++....+..+....+ ..
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 310 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEE 310 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCC
Confidence 99999877654555443 447889999999998877765545567899999999987776654433233 36
Q ss_pred EEEcCCCCEEEEE--eCCC------eEEEEE-cCCCce--eEEEecCCCCCCcc-eEEEcCCCcEEEEEECC---CcEEE
Q 001163 604 VQFDTTKNRFLAA--GDEF------MIKFWD-MDNVNL--LASIDADGGLQASP-CIRFNKEGILLAVSTND---NGIKI 668 (1134)
Q Consensus 604 ~~~~~~~~~l~~~--~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~-~v~~sp~~~~l~~~~~d---g~i~i 668 (1134)
++|+|||+.|+.. ..++ .|++|| ..+++. ...+.. + ...+. .++|+|+|+.|+..+.+ +.+++
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~-~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 388 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS-G-DWDVTKILAYDEKGNKIYFLSTEDLPRRRQL 388 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC-S-SSCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec-C-CeEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence 8999999977754 4666 577777 344441 333432 1 22333 36999999999876665 78889
Q ss_pred EEccC
Q 001163 669 LANAD 673 (1134)
Q Consensus 669 w~~~~ 673 (1134)
|++..
T Consensus 389 ~~~~~ 393 (723)
T 1xfd_A 389 YSANT 393 (723)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 98754
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=2.8e-22 Score=250.20 Aligned_cols=381 Identities=12% Similarity=0.102 Sum_probs=249.8
Q ss_pred CeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCC--ceEEEEEcCCCCEEEEEeCC---------Ce
Q 001163 553 SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKR--SVGVVQFDTTKNRFLAAGDE---------FM 621 (1134)
Q Consensus 553 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d---------g~ 621 (1134)
...+++|+|||+++++ +. ++.|++||..+++....+..+... .+..++|+|||++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~~~~~-~~----dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQ----KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CS----SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-eC----CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 4667899999997765 33 336999999999888887766531 38899999999999999864 78
Q ss_pred EEEEEcCCCceeEEEec-CCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccc
Q 001163 622 IKFWDMDNVNLLASIDA-DGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAP 700 (1134)
Q Consensus 622 i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1134)
|++||+.+++. ..+.. .++...+..++|+|||+.|+.++. +.|++|++.++. ..+....+...+
T Consensus 93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~-~~~~~~~~~~~~------------ 157 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ-AIRVVSTGKEGV------------ 157 (723)
T ss_dssp EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC-CEEEECCCBTTT------------
T ss_pred EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc-eEEEecCCCCCc------------
Confidence 99999999886 33332 233345889999999999999886 799999998763 222222111000
Q ss_pred ccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEE
Q 001163 701 AIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVS 780 (1134)
Q Consensus 701 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 780 (1134)
+..+ +.-|-..+ .-...+.
T Consensus 158 -----------------------------------------~~~g-----~~~~v~~e---------------e~~~~~~ 176 (723)
T 1xfd_A 158 -----------------------------------------IYNG-----LSDWLYEE---------------EILKTHI 176 (723)
T ss_dssp -----------------------------------------EEEE-----ECCHHHHH---------------TTSSSSE
T ss_pred -----------------------------------------eECc-----ccceeEEE---------------EeccCcc
Confidence 0000 00000000 0112457
Q ss_pred EEEEecCCceeeeeccC-CeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEE
Q 001163 781 RLIYTNSGLAILALASN-AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVM 859 (1134)
Q Consensus 781 ~l~~spdg~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la 859 (1134)
+++|||||+.|++++.+ +.+.+|++... .+ .+...+..+.|+++|..
T Consensus 177 ~~~~SpDg~~la~~~~~~~~~~~~~~~~~--------------------~~----------~~~~~~~~~~~~~~G~~-- 224 (723)
T 1xfd_A 177 AHWWSPDGTRLAYAAINDSRVPIMELPTY--------------------TG----------SIYPTVKPYHYPKAGSE-- 224 (723)
T ss_dssp EEEECTTSSEEEEEEEECTTSCEEEECCC--------------------SS----------SSSCCCEEEECCBTTSC--
T ss_pred eEEECCCCCEEEEEEECCCccceEEeecc--------------------CC----------cCCCcceeccCCCCCCC--
Confidence 89999999999988765 45556654311 00 02234678889888863
Q ss_pred EeeCCeEEEEEccCCeEEEEecCC------CCCeEEEEEcCCCCcEEEEEeC----CCcEEEEEcccceEEEeccCc-cC
Q 001163 860 SASGGKISLFNMMTFKTMTTFMPP------PPAATFLAFHPQDNNIIAIGME----DSSIQIYNVRVDEVKTKLKGH-QK 928 (1134)
Q Consensus 860 ~~sdg~i~lwd~~~~~~~~~~~~~------~~~v~~l~~sp~~~~~la~g~~----dg~i~iwd~~~~~~~~~l~~h-~~ 928 (1134)
..+.+|++||+.+++....+..+ ...+..++|+| ||++|++... +..|++||+.+++....+..+ ..
T Consensus 225 -~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~ 302 (723)
T 1xfd_A 225 -NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEA 302 (723)
T ss_dssp -CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSS
T ss_pred -CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCC
Confidence 22458999999998876676654 56789999999 8888877653 358999999999877665443 34
Q ss_pred ce----EEEEEeeCCCEEEE--EeCCC------cEEEEE-CCCCccccceeeeecCCCCCCCCCceE-EEEcCCCCEEEE
Q 001163 929 RI----TGLAFSNTLNVLVS--SGADS------QLCVWS-TDGWEKQASKFLTIPNGRTASALADTR-VQFHLDQTHLLA 994 (1134)
Q Consensus 929 ~V----~~l~~s~d~~~l~s--~s~Dg------~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~fs~dg~~l~~ 994 (1134)
.+ ..++|||||+.|+. +..|+ .|.+|| ..+++... ...+..++. .+.. ++|||||+.|+.
T Consensus 303 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~~l~~~~~----~~~~~~~~spdg~~l~~ 376 (723)
T 1xfd_A 303 WLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDN--IQSITSGDW----DVTKILAYDEKGNKIYF 376 (723)
T ss_dssp CCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCC--CCBSCCSSS----CEEEEEEEETTTTEEEE
T ss_pred EEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccc--eeEeecCCe----EEEeeeEEcCCCCEEEE
Confidence 33 37899999998775 45666 466677 33332000 111222222 2443 699999999987
Q ss_pred -Eee---ceEEEEeCCCcc--cceeeccC-CCccCEEEEEEccCCCEEEEEecC-C--cEEEeecCCCcc
Q 001163 995 -VHE---TQIAIYEAPKLE--CLKQFVPR-EASGPITHATYSCDSQSIYVAFEE-G--SVGVLTASTLRL 1054 (1134)
Q Consensus 995 -~~d---~~i~iwd~~~~~--~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D-g--~i~vwd~~~~~~ 1054 (1134)
+.+ +.+++|++.... ....+... .|...+..++|||||++|+..... + ...+++..++..
T Consensus 377 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~ 446 (723)
T 1xfd_A 377 LSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKK 446 (723)
T ss_dssp EESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCE
T ss_pred EEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCE
Confidence 443 789999987543 23333310 156778899999999998765432 2 234456555443
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=3.8e-21 Score=214.77 Aligned_cols=280 Identities=10% Similarity=0.064 Sum_probs=205.9
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeC-CC
Q 001163 362 MDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS-KH 440 (1134)
Q Consensus 362 v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~-dg 440 (1134)
..|++++.+++++++.++.|.+||..+++.+.. ...+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 467788888899999999999999999887653 12244556 9999999997777665 88
Q ss_pred EEEEEEccCCce-eeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC-C--eEEEEECCCCceeEEecCCCcCEEEEecc
Q 001163 441 IVHLYTYHGGDE-LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-R--VIKVWDAVTGTKQYIFEGHESPVYSICPH 516 (1134)
Q Consensus 441 ~v~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d-~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 516 (1134)
.|.+||+.+++. .. .+..+..+..+++|+|+|+ +++++..+ + .|.+||+.+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999999875 33 4555666666699999999 56655544 3 8999999999998887754 456888886
Q ss_pred ccCCcc-EEEEecCCCc-EEEEecCCCCcee----eecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCee-
Q 001163 517 HKENIQ-FIFSTATDGK-IKAWLYDNLGSRV----DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV- 589 (1134)
Q Consensus 517 ~~~~~~-~l~s~s~dg~-i~vwd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~- 589 (1134)
++ |+ ++++...++. |.+|+++..+... ...........++|+|+|++++++.. .+..|.+||+.+++.
T Consensus 137 pd--g~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 137 PN--GNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENI 211 (331)
T ss_dssp TT--SSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSC
T ss_pred CC--CCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCccc
Confidence 54 45 4555566688 9999988655432 22233456789999999998777653 244699999999887
Q ss_pred --EEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCce--eEEEecC--CCCC---CcceEEEcCCCcEEEE
Q 001163 590 --KRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNL--LASIDAD--GGLQ---ASPCIRFNKEGILLAV 659 (1134)
Q Consensus 590 --~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~--~~~~---~v~~v~~sp~~~~l~~ 659 (1134)
+..+... ..+..++|+|+++++++++ .++.|.+||..+++. +..+... .... ....++|+|+|++|++
T Consensus 212 ~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 289 (331)
T 3u4y_A 212 TLLNAVGTN--NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFI 289 (331)
T ss_dssp EEEEEEECS--SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEE
T ss_pred ceeeeccCC--CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEE
Confidence 7777654 2567899999999887765 578899999999887 4443322 1111 1245899999998876
Q ss_pred EEC-CCcEEEEEccCC
Q 001163 660 STN-DNGIKILANADG 674 (1134)
Q Consensus 660 ~~~-dg~i~iw~~~~~ 674 (1134)
++. ++.|.+|++...
T Consensus 290 ~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 290 SANISRELKVFTISGK 305 (331)
T ss_dssp EETTTTEEEEEETTSC
T ss_pred ecCCCCcEEEEEecCC
Confidence 655 569999999764
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=6e-21 Score=237.25 Aligned_cols=238 Identities=8% Similarity=0.003 Sum_probs=167.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCEEEEEEccCCcee-eeeeeeecCC-----------------CCEEEEEEecCCCceEEE
Q 001163 420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDEL-RNHLEIEAHV-----------------GSVNDLAFSYPNKQLSVV 481 (1134)
Q Consensus 420 ~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~-~~~~~l~~h~-----------------~~V~~v~~s~~~~~~~l~ 481 (1134)
.+..+.|+ |+.+++++.|+ | +||+.+++.+ .. +..|. ..|.+++|+|| + .++
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~ 96 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVV 96 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-T--EEE
T ss_pred cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-C--eEE
Confidence 34557888 67777888888 8 9999998762 32 22232 56999999999 5 344
Q ss_pred EEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCC-----CCceeeecCCCCC---
Q 001163 482 TCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN-----LGSRVDYDAPGHS--- 553 (1134)
Q Consensus 482 s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-----~~~~~~~~~~~~~--- 553 (1134)
.+ .|+.|++||+.+++.... ..+...+.+++|+| ||+.|+++ .|+.|++||+.+ ++...........
T Consensus 97 ~~-~~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 97 LF-TQGGLVGFDMLARKVTYL-FDTNEETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp EE-ETTEEEEEETTTTEEEEE-ECCTTCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred EE-ECCEEEEEECCCCceEEc-cCCcccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 33 359999999988876544 44666777788854 55788875 679999999987 6554433333222
Q ss_pred -----------eeEEEECcCCCEEEEEecCC-----------------------------CCCeEEEEEeCCCCeeEEEe
Q 001163 554 -----------STMMAYSADGARLFSCGTNK-----------------------------EGESYLVEWNESEGAVKRTY 593 (1134)
Q Consensus 554 -----------v~~~~~s~~~~~l~~~~~~~-----------------------------~~~~~i~~wd~~~~~~~~~~ 593 (1134)
+.+++|+|||++|++++.+. ..+..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 47899999999999987331 24567999999998876554
Q ss_pred cC-CCCCceEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCCceeEEEecCCCC---CCcceEEEcC--CCcEEEEEEC
Q 001163 594 HG-LGKRSVGVVQFDTTKNRFLAAGDEF-----MIKFWDMDNVNLLASIDADGGL---QASPCIRFNK--EGILLAVSTN 662 (1134)
Q Consensus 594 ~~-~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~---~~v~~v~~sp--~~~~l~~~~~ 662 (1134)
.. .....+..++|+||+++|++++.++ .|++||..+++....+...... ..+..++|+| +|+++++++.
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~ 331 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR 331 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc
Confidence 33 2233688999999999999988665 8999999998444333211111 2346789999 9999999988
Q ss_pred CCcEEEEEcc
Q 001163 663 DNGIKILANA 672 (1134)
Q Consensus 663 dg~i~iw~~~ 672 (1134)
||.+++|.+.
T Consensus 332 ~g~~~l~~~~ 341 (706)
T 2z3z_A 332 DGWNHLYLYD 341 (706)
T ss_dssp TSSCEEEEEE
T ss_pred CCccEEEEEE
Confidence 9988888764
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=2e-20 Score=211.08 Aligned_cols=279 Identities=11% Similarity=0.082 Sum_probs=215.1
Q ss_pred EEEeecCCCeeEEEEcCCCCeEEEEEeC------CCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEE
Q 001163 350 VMTLNQGSAVKSMDFHPVQQILLVVGTN------MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNR 423 (1134)
Q Consensus 350 ~~~~~h~~~V~~v~fsp~g~~lla~gs~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 423 (1134)
.........+..++|+|+|++++++... ++.|.+||..+++.+... .....+.+
T Consensus 34 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~--------------------~~~~~~~~ 93 (353)
T 3vgz_A 34 MLRKAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAI--------------------HNDLKPFG 93 (353)
T ss_dssp EEEEEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEE--------------------EESSCCCS
T ss_pred hhhhhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEE--------------------ecCCCcce
Confidence 3345566788999999999977655543 678999999998766531 12345778
Q ss_pred EEEcCCCCEEEEE-eCCCEEEEEEccCCceeeeeeeeecCCC---------CEEEEEEecCCCceEEEEE--eCCCeEEE
Q 001163 424 VMWSPDGTLFGVA-YSKHIVHLYTYHGGDELRNHLEIEAHVG---------SVNDLAFSYPNKQLSVVTC--GEDRVIKV 491 (1134)
Q Consensus 424 l~~spd~~~las~-s~dg~v~iwd~~~~~~~~~~~~l~~h~~---------~V~~v~~s~~~~~~~l~s~--s~d~~i~i 491 (1134)
++|+|+|++++++ ..++.|.+||..+++.+.. +..+.. .+.+++|+|+++. ++.+ +.++.|.+
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~--l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGR---LVLDDRKRTEEVRPLQPRELVADDATNT--VYISGIGKESVIWV 168 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEE---EESCCCCCCSSCCCCEEEEEEEETTTTE--EEEEEESSSCEEEE
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEE---EecCCCccccccCCCCCceEEECCCCCE--EEEEecCCCceEEE
Confidence 9999999966554 5579999999999886553 333322 2789999999995 4443 45889999
Q ss_pred EECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecC----CCCCeeEEEECcCCCEEE
Q 001163 492 WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA----PGHSSTMMAYSADGARLF 567 (1134)
Q Consensus 492 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~ 567 (1134)
||..+++.+..+..+...+.+++|++ +++++++++.++.|.+||+.+.+....+.. +...+..++|+|++++++
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 246 (353)
T 3vgz_A 169 VDGGNIKLKTAIQNTGKMSTGLALDS--EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAF 246 (353)
T ss_dssp EETTTTEEEEEECCCCTTCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEE
T ss_pred EcCCCCceEEEecCCCCccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEE
Confidence 99999999988876666677788754 557898899999999999988776655543 344677899999999887
Q ss_pred EEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcc
Q 001163 568 SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASP 646 (1134)
Q Consensus 568 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 646 (1134)
++.. ....|.+||..+++.+..+..... ..++|+|+++++++++ .++.|.+||..+++.+..+... ..+.
T Consensus 247 ~~~~---~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~ 317 (353)
T 3vgz_A 247 ITDS---KAAEVLVVDTRNGNILAKVAAPES---LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP---THPN 317 (353)
T ss_dssp EEES---SSSEEEEEETTTCCEEEEEECSSC---CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC---SEEE
T ss_pred EEeC---CCCEEEEEECCCCcEEEEEEcCCC---ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC---CCCC
Confidence 7753 245799999999998888775432 4689999999777666 7899999999999998888653 2568
Q ss_pred eEEEcCCCcEEEEEECCC
Q 001163 647 CIRFNKEGILLAVSTNDN 664 (1134)
Q Consensus 647 ~v~~sp~~~~l~~~~~dg 664 (1134)
+++|+|+|++|+++..++
T Consensus 318 ~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 318 SLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEECTTSCEEEEEEECC
T ss_pred eEEEcCCCCEEEEEEccc
Confidence 999999999877776654
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=4.3e-21 Score=238.51 Aligned_cols=284 Identities=9% Similarity=0.064 Sum_probs=201.9
Q ss_pred cccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCC
Q 001163 776 AMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND 855 (1134)
Q Consensus 776 ~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg 855 (1134)
...|.+++|+|| +.++.+ .++.+++|++.. ++.... .. +...+..++|||||
T Consensus 81 ~~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~----------------------~~~~~l--~~--~~~~~~~~~~SpdG 132 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLF-TQGGLVGFDMLA----------------------RKVTYL--FD--TNEETASLDFSPVG 132 (706)
T ss_dssp -CCCEEEEETTT-TEEEEE-ETTEEEEEETTT----------------------TEEEEE--EC--CTTCCTTCEECTTS
T ss_pred ccCceeEEECCC-CeEEEE-ECCEEEEEECCC----------------------CceEEc--cC--CcccccCCcCCCCC
Confidence 356899999999 555555 458999997643 322221 11 45567889999999
Q ss_pred CeEEEeeCCeEEEEEccC-----CeEEEEecCCCCC--------------eEEEEEcCCCCcEEEEEe------------
Q 001163 856 SYVMSASGGKISLFNMMT-----FKTMTTFMPPPPA--------------ATFLAFHPQDNNIIAIGM------------ 904 (1134)
Q Consensus 856 ~~la~~sdg~i~lwd~~~-----~~~~~~~~~~~~~--------------v~~l~~sp~~~~~la~g~------------ 904 (1134)
++|+++.++.|++||+.+ ++.......+... +.+++|+| ||++|++++
T Consensus 133 ~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~ 211 (706)
T 2z3z_A 133 DRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIV 211 (706)
T ss_dssp SEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEE
T ss_pred CEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEee
Confidence 999998899999999998 7776554444333 48999999 899999887
Q ss_pred ---------------------CCCcEEEEEcccceEEEecc--CccCceEEEEEeeCCCEEEEEeCCC-----cEEEEEC
Q 001163 905 ---------------------EDSSIQIYNVRVDEVKTKLK--GHQKRITGLAFSNTLNVLVSSGADS-----QLCVWST 956 (1134)
Q Consensus 905 ---------------------~dg~i~iwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~s~Dg-----~i~iwd~ 956 (1134)
.+..|++||+.+++...... .|...+.+++|+|||++|++++.|+ .|++||+
T Consensus 212 ~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~ 291 (706)
T 2z3z_A 212 DYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDA 291 (706)
T ss_dssp ECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEET
T ss_pred ccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEEC
Confidence 44689999999988655442 5777899999999999999988776 8999999
Q ss_pred CCCccccceeeeecCCCCCCCCCceEEEEcC--CCCEEEEE-eeceEEEEeCC-CcccceeeccCCCccCEEE-EEEccC
Q 001163 957 DGWEKQASKFLTIPNGRTASALADTRVQFHL--DQTHLLAV-HETQIAIYEAP-KLECLKQFVPREASGPITH-ATYSCD 1031 (1134)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~--dg~~l~~~-~d~~i~iwd~~-~~~~~~~~~~~~h~~~v~~-~~~s~d 1031 (1134)
.+++.... ...... ......+..++|+| ||++++++ .++.++||++. +++.+..+. .|...+.+ ++|+||
T Consensus 292 ~~g~~~~~-~~~~~~--~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~--~~~~~v~~~~~~spd 366 (706)
T 2z3z_A 292 ETGRFVRT-LFVETD--KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT--KGEWEVTNFAGFDPK 366 (706)
T ss_dssp TTCCEEEE-EEEEEC--SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC--CSSSCEEEEEEECTT
T ss_pred CCCceeeE-EEEccC--CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC--CCCeEEEeeeEEcCC
Confidence 98732111 111111 10001246789999 99988875 66888888876 566666665 55677876 899999
Q ss_pred CCEEEEEec-CC----cEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecC----CcEEEEeCC
Q 001163 1032 SQSIYVAFE-EG----SVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTD----GGVYIIEPL 1102 (1134)
Q Consensus 1032 g~~l~s~s~-Dg----~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~D----g~v~vW~~~ 1102 (1134)
|+.|+.++. ++ .|..||+.+++. ..+. |...+.. ++|+| |+++|+.++.+ +.|++||+.
T Consensus 367 g~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l~--------~~~~~~~--~~~sp-dg~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 367 GTRLYFESTEASPLERHFYCIDIKGGKT-KDLT--------PESGMHR--TQLSP-DGSAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp SSEEEEEESSSCTTCBEEEEEETTCCCC-EESC--------CSSSEEE--EEECT-TSSEEEEEEECSSCSCEEEEEESS
T ss_pred CCEEEEEecCCCCceEEEEEEEcCCCCc-eecc--------CCCceEE--EEECC-CCCEEEEEecCCCCCcEEEEEECC
Confidence 998765554 44 677778777663 2222 2344554 48899 67877776544 459999987
Q ss_pred CCC
Q 001163 1103 EAE 1105 (1134)
Q Consensus 1103 ~~~ 1105 (1134)
..+
T Consensus 435 ~~~ 437 (706)
T 2z3z_A 435 KGS 437 (706)
T ss_dssp SCE
T ss_pred CCe
Confidence 655
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=9.9e-21 Score=211.38 Aligned_cols=287 Identities=11% Similarity=0.044 Sum_probs=197.4
Q ss_pred EEecCCce-eeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEe
Q 001163 783 IYTNSGLA-ILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSA 861 (1134)
Q Consensus 783 ~~spdg~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~ 861 (1134)
.|.+++.. +++...++.|.+||.. +++...... . +...+ .++|+|||++++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~----------------------~~~~~~~~~-~--~~~~~-~~~~s~dg~~l~~~ 57 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTD----------------------TLEILNQIT-L--GYDFV-DTAITSDCSNVVVT 57 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETT----------------------TCCEEEEEE-C--CCCEE-EEEECSSSCEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCc----------------------ccceeeeEE-c--cCCcc-eEEEcCCCCEEEEE
Confidence 45555554 6667778999999654 333322211 1 34455 99999999977666
Q ss_pred e--CCeEEEEEccCCeE-EEEecCCCCCeEEEEEcCCCCcEEEEEeCCC---cEEEEEcccceEEEeccCccCceEEEEE
Q 001163 862 S--GGKISLFNMMTFKT-MTTFMPPPPAATFLAFHPQDNNIIAIGMEDS---SIQIYNVRVDEVKTKLKGHQKRITGLAF 935 (1134)
Q Consensus 862 s--dg~i~lwd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg---~i~iwd~~~~~~~~~l~~h~~~V~~l~~ 935 (1134)
+ ++.|.+||+.+++. ...+..+.....+++|+| ++++|+++..++ .|.+||+.+++.+..+..+. ...+++|
T Consensus 58 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~ 135 (331)
T 3u4y_A 58 SDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAI 135 (331)
T ss_dssp ESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEE
T ss_pred eCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEE
Confidence 5 68999999999987 677766666666699999 888888665553 89999999999888776544 4689999
Q ss_pred eeCCCEEEEE-eCCCc-EEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE--eeceEEEEeCCCccc-
Q 001163 936 SNTLNVLVSS-GADSQ-LCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLEC- 1010 (1134)
Q Consensus 936 s~d~~~l~s~-s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~i~iwd~~~~~~- 1010 (1134)
+|||++|+++ ..++. |.+|++................ ......++|+|||++++++ .++.|.+||+.+++.
T Consensus 136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 136 SPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG----GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI 211 (331)
T ss_dssp CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS----SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC
T ss_pred CCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC----CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc
Confidence 9999865554 55688 9999998643211110111111 1347899999999987774 578999999999988
Q ss_pred --ceeeccCCCccCEEEEEEccCCCEEEEEe-cCCcEEEeecCCCcc--eeecCCCcccCCCCCCCcee-EEEEecCCCC
Q 001163 1011 --LKQFVPREASGPITHATYSCDSQSIYVAF-EEGSVGVLTASTLRL--RCRINPTAYLPTNPSLRVYP-LVIAGNPTDP 1084 (1134)
Q Consensus 1011 --~~~~~~~~h~~~v~~~~~s~dg~~l~s~s-~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~h~~~v~~-~~~~~~p~~~ 1084 (1134)
+..+.. ...+..++|+|||++|++++ .++.|.+||+.+++. +..+...... +...... -.++|+| |+
T Consensus 212 ~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~sp-dg 284 (331)
T 3u4y_A 212 TLLNAVGT---NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLI---DPRPLFGANQMALNK-TE 284 (331)
T ss_dssp EEEEEEEC---SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCC---CCGGGTTCCCEEECT-TS
T ss_pred ceeeeccC---CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccccc---CCCCcccccceEECC-CC
Confidence 666652 46678999999999876655 478899999999887 2222211000 0111111 1248889 67
Q ss_pred CEEEE-EecCCcEEEEeCCCCCCCc
Q 001163 1085 NQFAL-GLTDGGVYIIEPLEAEGRW 1108 (1134)
Q Consensus 1085 ~~l~s-~~~Dg~v~vW~~~~~~~~~ 1108 (1134)
++|++ +..++.|.+||+......+
T Consensus 285 ~~l~v~~~~~~~v~v~d~~~~~~~~ 309 (331)
T 3u4y_A 285 TKLFISANISRELKVFTISGKVVGY 309 (331)
T ss_dssp SEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CEEEEecCCCCcEEEEEecCCcccc
Confidence 76654 5556799999998766544
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=1.2e-20 Score=211.81 Aligned_cols=250 Identities=10% Similarity=0.114 Sum_probs=175.9
Q ss_pred CCCCeeEEEEcCCCCeEEEee-C-CeEEEEEcc--CCe--EEEEecCCCCCeEEEEEcCCCCcEEEEEe-CCCcEEEEEc
Q 001163 842 PEDAVPCFALSKNDSYVMSAS-G-GKISLFNMM--TFK--TMTTFMPPPPAATFLAFHPQDNNIIAIGM-EDSSIQIYNV 914 (1134)
Q Consensus 842 h~~~v~~v~~s~dg~~la~~s-d-g~i~lwd~~--~~~--~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~dg~i~iwd~ 914 (1134)
+...+.+++|+|+|++|++++ + +.|.+|++. +++ .+..+..+. .+..++|+| ++++|++++ .++.|.+||+
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence 556788999999999888887 4 899999997 554 444555433 789999999 787776655 4889999999
Q ss_pred ---ccceEEEeccCccCceEEEEEeeCCCEEEEEe-CCCcEEEEECCC-Cccccce--eeeecCCCCCCCCCceEEEEcC
Q 001163 915 ---RVDEVKTKLKGHQKRITGLAFSNTLNVLVSSG-ADSQLCVWSTDG-WEKQASK--FLTIPNGRTASALADTRVQFHL 987 (1134)
Q Consensus 915 ---~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~iwd~~~-~~~~~~~--~~~~~~~~~~~~~~v~~l~fs~ 987 (1134)
.+++.+..+..+. .+.+++|+|+++++++++ .|+.|.+||+.+ ++..... ......+ ..+..++|+|
T Consensus 114 ~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p 187 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-----AGPRHMVFHP 187 (343)
T ss_dssp ETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-----CCEEEEEECT
T ss_pred CCCccccccccccCCC-CceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC-----CCcceEEECC
Confidence 5555666666544 588999999999888877 899999999987 4422211 1222222 3578899999
Q ss_pred CCCEEEEE--eeceEEEEeCCC--ccc--ceeec--cCCC--ccCEEEEEEccCCCEEEE-EecCCcEEEeecC--CCc-
Q 001163 988 DQTHLLAV--HETQIAIYEAPK--LEC--LKQFV--PREA--SGPITHATYSCDSQSIYV-AFEEGSVGVLTAS--TLR- 1053 (1134)
Q Consensus 988 dg~~l~~~--~d~~i~iwd~~~--~~~--~~~~~--~~~h--~~~v~~~~~s~dg~~l~s-~s~Dg~i~vwd~~--~~~- 1053 (1134)
||++++++ .++.|.+|++.. ++. ..... ..++ ...+..++|+|||++|++ +..|+.|.+||+. +++
T Consensus 188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~ 267 (343)
T 1ri6_A 188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL 267 (343)
T ss_dssp TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCce
Confidence 99988764 578999999953 432 11111 1111 346778999999998874 4478999999998 332
Q ss_pred -ceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEe-cCCcEEEEeCCCCCCCccC
Q 001163 1054 -LRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGL-TDGGVYIIEPLEAEGRWGT 1110 (1134)
Q Consensus 1054 -~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~-~Dg~v~vW~~~~~~~~~~~ 1110 (1134)
.+..+.. + ..+..+ +|+| ++++|++++ .|+.|.+|++....+++..
T Consensus 268 ~~~~~~~~-------~-~~~~~~--~~s~-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 315 (343)
T 1ri6_A 268 SKEGFQPT-------E-TQPRGF--NVDH-SGKYLIAAGQKSHHISVYEIVGEQGLLHE 315 (343)
T ss_dssp EEEEEEEC-------S-SSCCCE--EECT-TSSEEEEECTTTCEEEEEEEETTTTEEEE
T ss_pred EEeeeecC-------C-CccceE--EECC-CCCEEEEecCCCCeEEEEEEcCCCceeeE
Confidence 2222221 1 124444 8889 678777777 6899999977655554443
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=1.2e-19 Score=203.76 Aligned_cols=274 Identities=12% Similarity=0.137 Sum_probs=191.6
Q ss_pred CCeEEEEEeCCCcEEEEecCC-ccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCC-CEEEEE
Q 001163 368 QQILLVVGTNMGDVMLWEVGS-RERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK-HIVHLY 445 (1134)
Q Consensus 368 g~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~d-g~v~iw 445 (1134)
+++++++++.|+.|.+||+.. ++..... ...|...+.+++|+|+|++|++++.+ +.|.+|
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~ 65 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQ------------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 65 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEE------------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEee------------------eEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence 345667778899999999963 3221110 12467789999999999999998886 999999
Q ss_pred Ecc--CCceeeeeeeeecCCCCEEEEEEecCCCceEEEEE-eCCCeEEEEECC---CCceeEEecCCCcCEEEEeccccC
Q 001163 446 TYH--GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTC-GEDRVIKVWDAV---TGTKQYIFEGHESPVYSICPHHKE 519 (1134)
Q Consensus 446 d~~--~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~-s~d~~i~iwd~~---~~~~~~~~~~h~~~v~~~~~~~~~ 519 (1134)
++. +++ ......+..+. .+.+++|+|+++ +++++ ..++.|.+||+. +++.+..+..+ ..+.+++|++
T Consensus 66 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~s~dg~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~-- 138 (343)
T 1ri6_A 66 RIAPDDGA-LTFAAESALPG-SLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP-- 138 (343)
T ss_dssp EECTTTCC-EEEEEEEECSS-CCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT--
T ss_pred EecCCCCc-eeeccccccCC-CCcEEEEcCCCC--EEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC--
Confidence 998 554 22233344444 789999999999 45444 458899999994 44555555544 3577788755
Q ss_pred CccEEEEec-CCCcEEEEecCC-CCcee----eecC-CCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC--CCee-
Q 001163 520 NIQFIFSTA-TDGKIKAWLYDN-LGSRV----DYDA-PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES--EGAV- 589 (1134)
Q Consensus 520 ~~~~l~s~s-~dg~i~vwd~~~-~~~~~----~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~- 589 (1134)
+++++++++ .++.|++||+.. +.... .... ....+..++|+|+++++++++. .+..|.+||+. +++.
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCE
T ss_pred CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEE
Confidence 446666666 899999999986 33221 2222 3447888999999998877652 24469999995 3433
Q ss_pred -EEEecCCC-----CCceEEEEEcCCCCEEEEEe-CCCeEEEEEcC--CC--ceeEEEecCCCCCCcceEEEcCCCcEEE
Q 001163 590 -KRTYHGLG-----KRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMD--NV--NLLASIDADGGLQASPCIRFNKEGILLA 658 (1134)
Q Consensus 590 -~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~--~~--~~~~~~~~~~~~~~v~~v~~sp~~~~l~ 658 (1134)
...+.... ...+..++|+|++++++++. .++.|.+||+. ++ +.+..+... . .+..++|+|+|++|+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~--~-~~~~~~~s~dg~~l~ 292 (343)
T 1ri6_A 216 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE--T-QPRGFNVDHSGKYLI 292 (343)
T ss_dssp EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS--S-SCCCEEECTTSSEEE
T ss_pred EEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC--C-ccceEEECCCCCEEE
Confidence 22332111 12456799999999888655 78999999998 33 344444432 2 378999999999888
Q ss_pred EEE-CCCcEEEEEcc
Q 001163 659 VST-NDNGIKILANA 672 (1134)
Q Consensus 659 ~~~-~dg~i~iw~~~ 672 (1134)
+++ .++.+.+|++.
T Consensus 293 ~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 293 AAGQKSHHISVYEIV 307 (343)
T ss_dssp EECTTTCEEEEEEEE
T ss_pred EecCCCCeEEEEEEc
Confidence 887 58999999665
No 144
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=1.6e-20 Score=205.66 Aligned_cols=257 Identities=14% Similarity=0.127 Sum_probs=187.8
Q ss_pred EEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccC-Cce
Q 001163 374 VGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHG-GDE 452 (1134)
Q Consensus 374 ~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~-~~~ 452 (1134)
.++.|+.|++||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 45678999999999887543 345888999999999999999987 78999999998 764
Q ss_pred eeeeeeeecC-CCCEEEEEEecCCCceEEEEEe--CCCeEEE--EECCCCceeEEecCCCcCEEEEeccccCCccEEE-E
Q 001163 453 LRNHLEIEAH-VGSVNDLAFSYPNKQLSVVTCG--EDRVIKV--WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIF-S 526 (1134)
Q Consensus 453 ~~~~~~l~~h-~~~V~~v~~s~~~~~~~l~s~s--~d~~i~i--wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s 526 (1134)
.. ...+| ...+.+++|+|+++ +|++++ .++...| ||..+++ ...+..+. .+..++|+++ ++.|+ +
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spd--g~~l~~~ 146 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPD--GKSFTYC 146 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTT--SSEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCC--CCEEEEE
Confidence 43 23444 46789999999999 677777 3344444 5555554 44454443 4888888654 46665 7
Q ss_pred ecCCCcEEEEecCCC-CceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC-CCeeEEEecCCCCCceEEE
Q 001163 527 TATDGKIKAWLYDNL-GSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES-EGAVKRTYHGLGKRSVGVV 604 (1134)
Q Consensus 527 ~s~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~ 604 (1134)
++.|+.+++|+++.. .....+..+...+.+++|+|+++.++.++.. ++. +.+|++. .+.....+..+.. .+..+
T Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~~~--~~i~~~~~~~~~~~~~~~~~~-~~~~~ 222 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR-TGQ--MQIWRVRVDGSSVERITDSAY-GDWFP 222 (297)
T ss_dssp EEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT-TSS--CEEEEEETTSSCEEECCCCSE-EEEEE
T ss_pred ECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC-CCC--ccEEEECCCCCCcEEEecCCc-ccCCe
Confidence 888999999997543 3344455566689999999999988877632 123 5566654 3445566665554 78889
Q ss_pred EEcCCCCEEEEEeCC-----------CeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC
Q 001163 605 QFDTTKNRFLAAGDE-----------FMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 664 (1134)
Q Consensus 605 ~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg 664 (1134)
+|+|++++|++++.+ +.|++||+.+++........++...+.+++|+|+++.|++++.+.
T Consensus 223 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 223 HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 999999999988765 569999999887654443223355788999999999998887654
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=1.4e-19 Score=204.15 Aligned_cols=273 Identities=12% Similarity=0.089 Sum_probs=203.9
Q ss_pred cccEEEEEEecCCceeeeecc-------CCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeE
Q 001163 776 AMRVSRLIYTNSGLAILALAS-------NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPC 848 (1134)
Q Consensus 776 ~~~i~~l~~spdg~~l~~~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~ 848 (1134)
...+..++|+|+|+.+++++. ++.+.+||.. +++...... ....+..
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~----------------------~~~~~~~~~----~~~~~~~ 93 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPV----------------------TLEVTQAIH----NDLKPFG 93 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTT----------------------TCCEEEEEE----ESSCCCS
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCC----------------------CCeEEEEEe----cCCCcce
Confidence 456789999999998887774 4578777543 333322211 1234678
Q ss_pred EEEcCCCCeEEEee--CCeEEEEEccCCeEEEEecCCCCC---------eEEEEEcCCCCcEEEEEe--CCCcEEEEEcc
Q 001163 849 FALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPA---------ATFLAFHPQDNNIIAIGM--EDSSIQIYNVR 915 (1134)
Q Consensus 849 v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~~~~~---------v~~l~~sp~~~~~la~g~--~dg~i~iwd~~ 915 (1134)
++|+|||++++++. ++.|.+||..+++.+..+..+... +.+++|+| +++++++++ .++.|.+||+.
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGG 172 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETT
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCC
Confidence 99999999766654 689999999999998887654422 78999999 777666665 47899999999
Q ss_pred cceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE
Q 001163 916 VDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV 995 (1134)
Q Consensus 916 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~ 995 (1134)
+++.+..+..+...+.+++|+|++++|++++.++.|.+||+.+++... .+.. +.......+..++|+|||++++++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~--~~~~--~~~~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 173 NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILS--RKKL--LDDGKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEE--EEEC--CCSSSCCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEE--EEEc--CCCCCCcccceEEECCCCCEEEEE
Confidence 999988888666778899999999999999999999999999876332 1222 111111346789999999988874
Q ss_pred --eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEe-cCCcEEEeecCCCcceeecCCCcccCCCCCCCc
Q 001163 996 --HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAF-EEGSVGVLTASTLRLRCRINPTAYLPTNPSLRV 1072 (1134)
Q Consensus 996 --~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v 1072 (1134)
.++.|.+||..+++.+..+.... ...++|+|||+++++++ .++.|.+||+.+++.+..+... .
T Consensus 249 ~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~--------~-- 314 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP--------T-- 314 (353)
T ss_dssp ESSSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC--------S--
T ss_pred eCCCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC--------C--
Confidence 44899999999999887776422 25699999999766555 6899999999999887666522 1
Q ss_pred eeEEEEecCCCCCEEEEEecCC
Q 001163 1073 YPLVIAGNPTDPNQFALGLTDG 1094 (1134)
Q Consensus 1073 ~~~~~~~~p~~~~~l~s~~~Dg 1094 (1134)
.+..++|+| |+++|+++..++
T Consensus 315 ~~~~~~~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 315 HPNSLALSA-DGKTLYVSVKQK 335 (353)
T ss_dssp EEEEEEECT-TSCEEEEEEECC
T ss_pred CCCeEEEcC-CCCEEEEEEccc
Confidence 244568889 677666666553
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.85 E-value=1.8e-19 Score=201.60 Aligned_cols=278 Identities=10% Similarity=0.065 Sum_probs=203.7
Q ss_pred EEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCC-CEEEEEEcCCCCEEE-EEeCCCEEEEEEcc
Q 001163 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTA-SVNRVMWSPDGTLFG-VAYSKHIVHLYTYH 448 (1134)
Q Consensus 371 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l~~spd~~~la-s~s~dg~v~iwd~~ 448 (1134)
++++++.++.|.+||+.+++.+... ..++.. .+.+++|+|||++++ +++.++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~------------------~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVI------------------TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEE------------------ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEE------------------EcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 6788999999999999998766431 112222 478899999998765 55667899999999
Q ss_pred CCceeeeeeeeec---CCCCEEEEEEecCCCceEEEEEe------------CCCeEEEEECCCCceeEEecCCCcCEEEE
Q 001163 449 GGDELRNHLEIEA---HVGSVNDLAFSYPNKQLSVVTCG------------EDRVIKVWDAVTGTKQYIFEGHESPVYSI 513 (1134)
Q Consensus 449 ~~~~~~~~~~l~~---h~~~V~~v~~s~~~~~~~l~s~s------------~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 513 (1134)
+++.+... .+.. |...+.+++|+|+|+ ++++++ .++.|.+||+.+++.+..+.. ...+.++
T Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 98865432 1211 223677899999998 566664 579999999999988887764 3456777
Q ss_pred eccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCC-----------------
Q 001163 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGE----------------- 576 (1134)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~----------------- 576 (1134)
+|++ ++++++++ ++.|.+||+.+.+....+..... ...+.|+|+++.++..+... +.
T Consensus 141 ~~s~--dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~ 214 (337)
T 1pby_B 141 AWAR--DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESS-GVMATPFYTARKDIDPADP 214 (337)
T ss_dssp EECT--TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTT-TEEEEEEEEEBTTSCTTSG
T ss_pred EECC--CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCC-Cceeeeeeccccccccccc
Confidence 7754 45767776 68999999987766555443331 11337899998776554321 11
Q ss_pred ----eEEEEEeCCCCeeEE-EecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEc
Q 001163 577 ----SYLVEWNESEGAVKR-TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN 651 (1134)
Q Consensus 577 ----~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 651 (1134)
..|.+||+.+++... .+..+. ..+..++|+|++++++++ ++.|++||+.+++.+..+... ..+.+++|+
T Consensus 215 ~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s 288 (337)
T 1pby_B 215 TAYRTGLLTMDLETGEMAMREVRIMD-VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP---HSYYSVNVS 288 (337)
T ss_dssp GGEEEEEEEEETTTCCEEEEEEEECS-SCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS---SCCCEEEEC
T ss_pred cccccceEEEeCCCCCceEeecCCCC-CceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC---CceeeEEEC
Confidence 147899999987752 222233 367789999999999988 699999999999988887643 357899999
Q ss_pred CCCcEEEEEECCCcEEEEEccCCceeEEEecc
Q 001163 652 KEGILLAVSTNDNGIKILANADGIRLLRTVES 683 (1134)
Q Consensus 652 p~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 683 (1134)
|+|++|++++.++.|.+||+.++ .....+..
T Consensus 289 ~dg~~l~~~~~~~~i~v~d~~~~-~~~~~~~~ 319 (337)
T 1pby_B 289 TDGSTVWLGGALGDLAAYDAETL-EKKGQVDL 319 (337)
T ss_dssp TTSCEEEEESBSSEEEEEETTTC-CEEEEEEC
T ss_pred CCCCEEEEEcCCCcEEEEECcCC-cEEEEEEc
Confidence 99999999999999999999988 45555543
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.85 E-value=3.4e-19 Score=199.31 Aligned_cols=302 Identities=10% Similarity=0.061 Sum_probs=201.6
Q ss_pred cEEEEecCCCcEEEEecCCCCceeeecCCCC--CeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCC--
Q 001163 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGH--SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG-- 597 (1134)
Q Consensus 522 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-- 597 (1134)
+++++++.++.|.+||+.+.+....+..... .+..++|+|+|+.++++... +..|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~---~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK---SESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT---TTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCC---CCeEEEEECCCCCeEeeEEcCCcc
Confidence 5789999999999999988766665554332 47889999999887766532 3469999999999887776432
Q ss_pred --CCceEEEEEcCCCCEEEEEe------------CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECC
Q 001163 598 --KRSVGVVQFDTTKNRFLAAG------------DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 663 (1134)
Q Consensus 598 --~~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d 663 (1134)
...+..++|+|+++++++++ .++.|.+||+.+++.+..+... ..+.+++|+|+|++|+++ +
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~--~ 153 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP---RQITMLAWARDGSKLYGL--G 153 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC---SSCCCEEECTTSSCEEEE--S
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC---CCcceeEECCCCCEEEEe--C
Confidence 11456789999999999886 5799999999999888777642 357889999999988887 6
Q ss_pred CcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccc
Q 001163 664 NGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKI 743 (1134)
Q Consensus 664 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1134)
+.|.+||+.++ .....+....... ...+ .+++..++
T Consensus 154 ~~i~~~d~~~~-~~~~~~~~~~~~~-------------------------------------~~~~------s~dg~~l~ 189 (337)
T 1pby_B 154 RDLHVMDPEAG-TLVEDKPIQSWEA-------------------------------------ETYA------QPDVLAVW 189 (337)
T ss_dssp SSEEEEETTTT-EEEEEECSTTTTT-------------------------------------TTBC------CCBCCCCC
T ss_pred CeEEEEECCCC-cEeeeeeccccCC-------------------------------------Ccee------CCCccEEe
Confidence 89999999887 3443332211000 0000 11111111
Q ss_pred ccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCc
Q 001163 744 ADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQ 823 (1134)
Q Consensus 744 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 823 (1134)
.....+....+ +.......++..... .....+.+|
T Consensus 190 ~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~-~~~~~v~~~-------------------- 224 (337)
T 1pby_B 190 NQHESSGVMAT------------------------PFYTARKDIDPADPT-AYRTGLLTM-------------------- 224 (337)
T ss_dssp CCCTTTTEEEE------------------------EEEEEBTTSCTTSGG-GEEEEEEEE--------------------
T ss_pred eeccCCCceee------------------------eeecccccccccccc-ccccceEEE--------------------
Confidence 11111100000 000000000000000 011134444
Q ss_pred ccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEE
Q 001163 824 LWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIG 903 (1134)
Q Consensus 824 ~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g 903 (1134)
|+.+++.....+.. +...+..++|+|||++++++ ++.|++||+.+++.+..+.. ...+.+++|+| ++++|+++
T Consensus 225 --d~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~ 297 (337)
T 1pby_B 225 --DLETGEMAMREVRI--MDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL-PHSYYSVNVST-DGSTVWLG 297 (337)
T ss_dssp --ETTTCCEEEEEEEE--CSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECT-TSCEEEEE
T ss_pred --eCCCCCceEeecCC--CCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecC-CCceeeEEECC-CCCEEEEE
Confidence 44444443222222 55678899999999999888 79999999999998888763 35678999999 88888888
Q ss_pred eCCCcEEEEEcccceEEEeccCcc
Q 001163 904 MEDSSIQIYNVRVDEVKTKLKGHQ 927 (1134)
Q Consensus 904 ~~dg~i~iwd~~~~~~~~~l~~h~ 927 (1134)
+.++.|++||+.+++.+..+..+.
T Consensus 298 ~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 298 GALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp SBSSEEEEEETTTCCEEEEEECGG
T ss_pred cCCCcEEEEECcCCcEEEEEEcCC
Confidence 999999999999999888776543
No 148
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=2.7e-19 Score=201.14 Aligned_cols=250 Identities=12% Similarity=0.115 Sum_probs=169.0
Q ss_pred CCCCeeEEEEcCCCCeEEEee---CCeEEEEEccCCe--EEEEecCCCCCeEEEEEcCCCCcEEEEEe-CCCcEEEEEcc
Q 001163 842 PEDAVPCFALSKNDSYVMSAS---GGKISLFNMMTFK--TMTTFMPPPPAATFLAFHPQDNNIIAIGM-EDSSIQIYNVR 915 (1134)
Q Consensus 842 h~~~v~~v~~s~dg~~la~~s---dg~i~lwd~~~~~--~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~dg~i~iwd~~ 915 (1134)
+...+..++|+|||+++++.. ++.|++|++.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 345667899999999444443 3789999998766 4444455677889999999 888888777 78899999996
Q ss_pred -cc--eEEEeccC---------ccCceEEEEEeeCCCEEEEEeCCCcEEEEECC-CCccccceeeeecCCCCCCCCCceE
Q 001163 916 -VD--EVKTKLKG---------HQKRITGLAFSNTLNVLVSSGADSQLCVWSTD-GWEKQASKFLTIPNGRTASALADTR 982 (1134)
Q Consensus 916 -~~--~~~~~l~~---------h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 982 (1134)
++ +.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++...........+ ..+..
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence 33 33333321 12348899999999977777778899999998 443222111222222 34678
Q ss_pred EEEcCCCCEEEEE--eeceEEEEeCCC--cccc--eeeccCCC----ccCEEEEEEccCCCEEE-EEecCCcEEEeecCC
Q 001163 983 VQFHLDQTHLLAV--HETQIAIYEAPK--LECL--KQFVPREA----SGPITHATYSCDSQSIY-VAFEEGSVGVLTAST 1051 (1134)
Q Consensus 983 l~fs~dg~~l~~~--~d~~i~iwd~~~--~~~~--~~~~~~~h----~~~v~~~~~s~dg~~l~-s~s~Dg~i~vwd~~~ 1051 (1134)
++|+|||++|+++ .++.|.+|++.. ++.. ..+..... ...+..++|+|||++|+ +...++.|.+|++..
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 9999999987774 568899999874 4432 12211110 14588999999999875 555689999999973
Q ss_pred C---cceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEec-CCcEEEEeCCCCCCC
Q 001163 1052 L---RLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLT-DGGVYIIEPLEAEGR 1107 (1134)
Q Consensus 1052 ~---~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~-Dg~v~vW~~~~~~~~ 1107 (1134)
. +.+..+. .+...+. .++|+| |+++|++++. ++.|.+|++....++
T Consensus 272 ~g~~~~~~~~~-------~~~~~~~--~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 272 DGHLTLIQQIS-------TEGDFPR--DFDLDP-TEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp GGCEEEEEEEE-------CSSSCCC--EEEECT-TSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred CCcEEEeEEEe-------cCCCCcC--eEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 2 2222222 1223334 448899 6887777765 489999977544443
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=9.3e-20 Score=199.59 Aligned_cols=233 Identities=10% Similarity=0.009 Sum_probs=173.8
Q ss_pred CCCCeeEEEEcCCCCeEEEeeCCeEEEEEccC-CeEEEEecCCC-CCeEEEEEcCCCCcEEEEEe--CCCcEEEEEc--c
Q 001163 842 PEDAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMTTFMPPP-PAATFLAFHPQDNNIIAIGM--EDSSIQIYNV--R 915 (1134)
Q Consensus 842 h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~-~~~~~~~~~~~-~~v~~l~~sp~~~~~la~g~--~dg~i~iwd~--~ 915 (1134)
|...+.+++|+|||++|++++++.|++||+.+ ++.......+. ..+.+++|+| ++++|++++ .++...||.+ .
T Consensus 40 ~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~ 118 (297)
T 2ojh_A 40 TPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPST 118 (297)
T ss_dssp ESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETT
T ss_pred CCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceEEEEECC
Confidence 67889999999999999999999999999999 88777666553 6789999999 899999988 3345555554 4
Q ss_pred cceEEEeccCccCceEEEEEeeCCCEEE-EEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE
Q 001163 916 VDEVKTKLKGHQKRITGLAFSNTLNVLV-SSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA 994 (1134)
Q Consensus 916 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~ 994 (1134)
+++ ...+..+. .+..++|+||++.|+ +++.|+.+++|++..... ....+.. +. ..+.+++|+|||++|++
T Consensus 119 ~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~---~~~~~~~-~~---~~~~~~~~s~dg~~l~~ 189 (297)
T 2ojh_A 119 GGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG---VETRLTH-GE---GRNDGPDYSPDGRWIYF 189 (297)
T ss_dssp CCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC---CEEECCC-SS---SCEEEEEECTTSSEEEE
T ss_pred CCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCC---cceEccc-CC---CccccceECCCCCEEEE
Confidence 444 34454444 489999999999887 788899999998643211 1122222 21 45899999999998887
Q ss_pred E--eeceEEEEeCC-CcccceeeccCCCccCEEEEEEccCCCEEEEEecC-----------CcEEEeecCCCcceeecCC
Q 001163 995 V--HETQIAIYEAP-KLECLKQFVPREASGPITHATYSCDSQSIYVAFEE-----------GSVGVLTASTLRLRCRINP 1060 (1134)
Q Consensus 995 ~--~d~~i~iwd~~-~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D-----------g~i~vwd~~~~~~~~~~~~ 1060 (1134)
+ .++.+++|++. .+.....+. .|...+.+++|+|||++|++++.+ +.|.+||+.+++.......
T Consensus 190 ~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 267 (297)
T 2ojh_A 190 NSSRTGQMQIWRVRVDGSSVERIT--DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL 267 (297)
T ss_dssp EECTTSSCEEEEEETTSSCEEECC--CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE
T ss_pred EecCCCCccEEEECCCCCCcEEEe--cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc
Confidence 4 47889999886 455555554 567889999999999999988876 5699999998876433221
Q ss_pred CcccCCCCCCCceeEEEEecCCCCCEEEEEecCC
Q 001163 1061 TAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDG 1094 (1134)
Q Consensus 1061 ~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg 1094 (1134)
.+|...+..+ +|+| ++++|++++.|.
T Consensus 268 -----~~~~~~~~~~--~~sp-dg~~l~~~~~~~ 293 (297)
T 2ojh_A 268 -----FGGQGTMNSP--NWSP-DGDEFAYVRYFP 293 (297)
T ss_dssp -----EESTTTSCSC--CBCT-TSSEEEEEEECC
T ss_pred -----CCCCcccccc--eECC-CCCEEEEEEecc
Confidence 1344556666 8899 688888777664
No 150
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=7.6e-20 Score=227.67 Aligned_cols=328 Identities=10% Similarity=0.074 Sum_probs=220.5
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCC-CCCcceEEEcCCCcEEEEEEC---------CCcEEEEEcc
Q 001163 603 VVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG-LQASPCIRFNKEGILLAVSTN---------DNGIKILANA 672 (1134)
Q Consensus 603 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~l~~~~~---------dg~i~iw~~~ 672 (1134)
.++|+|++. ++..+.|+.|++||..+++....+..+.. ...+.+++|||||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 578999995 45555799999999999998777754311 013789999999999998876 6788888887
Q ss_pred CCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccc
Q 001163 673 DGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSR 752 (1134)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 752 (1134)
++. ... .
T Consensus 99 ~g~-~~~---~--------------------------------------------------------------------- 105 (719)
T 1z68_A 99 NGE-FVR---G--------------------------------------------------------------------- 105 (719)
T ss_dssp TTE-ECC---S---------------------------------------------------------------------
T ss_pred CCc-ccc---c---------------------------------------------------------------------
Confidence 662 100 0
Q ss_pred eeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcc
Q 001163 753 IWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGIL 832 (1134)
Q Consensus 753 iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 832 (1134)
.. -...+..++|||||+.|+.+. ++.|++|++... ..
T Consensus 106 -------------~~-------l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g----------------------~~ 142 (719)
T 1z68_A 106 -------------NE-------LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGD----------------------PP 142 (719)
T ss_dssp -------------SC-------CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTS----------------------CC
T ss_pred -------------ee-------cCcccccceECCCCCEEEEEE-CCeEEEEeCCCC----------------------Cc
Confidence 00 012356789999999998885 779999976532 21
Q ss_pred cccCCCC------CCCC---------CCeeEEEEcCCCCeEEEee-CC--------------------------------
Q 001163 833 MTNDISD------TNPE---------DAVPCFALSKNDSYVMSAS-GG-------------------------------- 864 (1134)
Q Consensus 833 ~~~~~~~------~~h~---------~~v~~v~~s~dg~~la~~s-dg-------------------------------- 864 (1134)
......+ .++. ....+++|||||++|++++ |+
T Consensus 143 ~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~ 222 (719)
T 1z68_A 143 FQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNP 222 (719)
T ss_dssp EECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCC
T ss_pred EEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCC
Confidence 1111111 0011 1225899999999999887 42
Q ss_pred --eEEEEEccCCeEE--EE------ecCCCCCeEEEEEcCCCCcEEEEEeCC----CcEEEEE----cccceEEEec---
Q 001163 865 --KISLFNMMTFKTM--TT------FMPPPPAATFLAFHPQDNNIIAIGMED----SSIQIYN----VRVDEVKTKL--- 923 (1134)
Q Consensus 865 --~i~lwd~~~~~~~--~~------~~~~~~~v~~l~~sp~~~~~la~g~~d----g~i~iwd----~~~~~~~~~l--- 923 (1134)
+|++||+.+++.. .. +.++...+..++|+| |++++++.... ..|.+|| +.+++....+
T Consensus 223 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~ 301 (719)
T 1z68_A 223 VVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHI 301 (719)
T ss_dssp EEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEE
T ss_pred eeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecc
Confidence 7889999887753 12 235777899999999 68887775433 2488899 8888776666
Q ss_pred -cCccCceE-----EEEEeeCCCEEEE--EeCCC--cEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEE
Q 001163 924 -KGHQKRIT-----GLAFSNTLNVLVS--SGADS--QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL 993 (1134)
Q Consensus 924 -~~h~~~V~-----~l~~s~d~~~l~s--~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~ 993 (1134)
.+|.+.+. .++|+|||+.++. +..++ .|.+||+.+++ ...+..+. ..+..+.++ |++.|+
T Consensus 302 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-----~~~lt~~~----~~v~~~~~~-d~~~i~ 371 (719)
T 1z68_A 302 EESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-----AIQITSGK----WEAINIFRV-TQDSLF 371 (719)
T ss_dssp EECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-----CEECSCSS----SCEEEEEEE-CSSEEE
T ss_pred cccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-----eEecccCc----eEEEEEEEE-eCCEEE
Confidence 46777776 8899999996654 44555 46667776654 12222221 236677777 888777
Q ss_pred E-Eee-----ceEEEEeCCC--ccc-ceeec--cCCCccCEEEEEEccCCCEEEE-EecC--CcEEEeecCCCcceeec
Q 001163 994 A-VHE-----TQIAIYEAPK--LEC-LKQFV--PREASGPITHATYSCDSQSIYV-AFEE--GSVGVLTASTLRLRCRI 1058 (1134)
Q Consensus 994 ~-~~d-----~~i~iwd~~~--~~~-~~~~~--~~~h~~~v~~~~~s~dg~~l~s-~s~D--g~i~vwd~~~~~~~~~~ 1058 (1134)
. +.+ +.+.+|.+.. +.. ...+. ..+|...+..+.|||||++++. ++.+ ..+.+||+.+++....+
T Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~ 450 (719)
T 1z68_A 372 YSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKIL 450 (719)
T ss_dssp EEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEE
T ss_pred EEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEe
Confidence 7 443 6788887754 321 12222 1135677889999999998764 4443 46889999888754433
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=2e-18 Score=198.53 Aligned_cols=314 Identities=15% Similarity=0.140 Sum_probs=198.1
Q ss_pred cccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCC
Q 001163 776 AMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND 855 (1134)
Q Consensus 776 ~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg 855 (1134)
...++.+++++++..+++++.++ +++|+........ ........+........ + .+...|.+++|+|+|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~---~~~~~v~~l~~spdg 104 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQN---KPGDDPNKIVDKVQGLL----V---PMKFPIHHLALSCDN 104 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCC---CTTCCTTCEEECCCCEE----E---CCSSCEEEEEECTTS
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhc---ccccCcccccccCcccc----c---cCCCcccEEEEcCCC
Confidence 34578899999999999998887 8887654210000 00000000000000000 1 156789999999999
Q ss_pred CeEE----Eee-CCeEEEEEccCC--------e---EEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceE
Q 001163 856 SYVM----SAS-GGKISLFNMMTF--------K---TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV 919 (1134)
Q Consensus 856 ~~la----~~s-dg~i~lwd~~~~--------~---~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~ 919 (1134)
++|+ +++ |++|+|||+.++ + .+..+.+|...|.+++|+|+++.+|++++.||+|++||+.++..
T Consensus 105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence 9999 666 899999999765 2 24556678999999999995489999999999999999999887
Q ss_pred EEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCC-CCCCCceEEEEcCCCCEEEEE--e
Q 001163 920 KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRT-ASALADTRVQFHLDQTHLLAV--H 996 (1134)
Q Consensus 920 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~fs~dg~~l~~~--~ 996 (1134)
+....+|...|++++|+|+|++|++|+.||+|++||+. ++.. ..+....... .....+.+++|++++.++++. .
T Consensus 185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~--~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEK--KVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEE--EEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccc--ccccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 77777899999999999999999999999999999998 3321 1122111100 011368999999999988773 3
Q ss_pred ec------eEEEEeCCCcccc-----eeecc-----CCCccCEEEEEEccCCCEEEEEec-CCcEEEeecCCCc--c-ee
Q 001163 997 ET------QIAIYEAPKLECL-----KQFVP-----REASGPITHATYSCDSQSIYVAFE-EGSVGVLTASTLR--L-RC 1056 (1134)
Q Consensus 997 d~------~i~iwd~~~~~~~-----~~~~~-----~~h~~~v~~~~~s~dg~~l~s~s~-Dg~i~vwd~~~~~--~-~~ 1056 (1134)
+| .+++|++.+.+.. ..+.. .+....-..+.+-+|.+++++++. .+.|.|....... . ..
T Consensus 262 dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~ 341 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESW 341 (434)
T ss_dssp TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEE
Confidence 32 3999999865321 11110 011112223334478788766654 3446666543321 1 00
Q ss_pred ecC--CCcccCCC-CCCCceeE--EEEecCCC------------CCEEEEEecCCcEEEEeCCC
Q 001163 1057 RIN--PTAYLPTN-PSLRVYPL--VIAGNPTD------------PNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus 1057 ~~~--~~~~~~~~-h~~~v~~~--~~~~~p~~------------~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
.+. ....+|-. .....+++ ++..+..+ .-.|.+.+.||.|..|.+-+
T Consensus 342 ~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 342 LLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp EECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred eccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 110 01111111 11223333 33333322 14788899999999999866
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=1.5e-19 Score=224.95 Aligned_cols=285 Identities=11% Similarity=0.045 Sum_probs=189.3
Q ss_pred EEEEEEecCCceeeeecc---------CCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccc-cCCCCCCCCCCeeE
Q 001163 779 VSRLIYTNSGLAILALAS---------NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMT-NDISDTNPEDAVPC 848 (1134)
Q Consensus 779 i~~l~~spdg~~l~~~~~---------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~h~~~v~~ 848 (1134)
+.+++|||||++|++++. ++.+++|++. +++.+. .. ....+..
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~----------------------~g~~~~~~~-----l~~~~~~ 114 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS----------------------NGEFVRGNE-----LPRPIQY 114 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT----------------------TTEECCSSC-----CCSSBCC
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC----------------------CCcccccee-----cCccccc
Confidence 668899999999998876 6788888654 333310 00 1245788
Q ss_pred EEEcCCCCeEEEeeCCeEEEEEccCCeEEEEe-cCCCCCe-----------------EEEEEcCCCCcEEEEEeCCC---
Q 001163 849 FALSKNDSYVMSASGGKISLFNMMTFKTMTTF-MPPPPAA-----------------TFLAFHPQDNNIIAIGMEDS--- 907 (1134)
Q Consensus 849 v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~-~~~~~~v-----------------~~l~~sp~~~~~la~g~~dg--- 907 (1134)
++|||||+.||.+.++.|++||+.+++..... .++...+ .+++||| ||++||+++.|.
T Consensus 115 ~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~ 193 (719)
T 1z68_A 115 LCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDI 193 (719)
T ss_dssp EEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTS
T ss_pred ceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCC
Confidence 99999999999999999999999888775433 2222222 4899999 899999887652
Q ss_pred -------------------------------cEEEEEcccceEE--------EeccCccCceEEEEEeeCCCEEEEEeCC
Q 001163 908 -------------------------------SIQIYNVRVDEVK--------TKLKGHQKRITGLAFSNTLNVLVSSGAD 948 (1134)
Q Consensus 908 -------------------------------~i~iwd~~~~~~~--------~~l~~h~~~V~~l~~s~d~~~l~s~s~D 948 (1134)
.|++||+.+++.. ..+.+|...+..++||||++++++....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~ 273 (719)
T 1z68_A 194 PVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKR 273 (719)
T ss_dssp CEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEES
T ss_pred ceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEecc
Confidence 7889999987642 2245688899999999998877775433
Q ss_pred C----cEEEEE----CCCCccccceeeeecCCCCCCCCCce-----EEEEcCCCCEEEE--E-ee--ceEEEEeCCCccc
Q 001163 949 S----QLCVWS----TDGWEKQASKFLTIPNGRTASALADT-----RVQFHLDQTHLLA--V-HE--TQIAIYEAPKLEC 1010 (1134)
Q Consensus 949 g----~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~v~-----~l~fs~dg~~l~~--~-~d--~~i~iwd~~~~~~ 1010 (1134)
+ .|.+|| +.+++...... ....++. ..+. .++|+|||+.++. + .+ ..|.+||+.+++
T Consensus 274 ~~~~~~l~~~d~~~~~~~g~~~~~~~-~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~- 348 (719)
T 1z68_A 274 VQNVSVLSICDFREDWQTWDCPKTQE-HIEESRT---GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN- 348 (719)
T ss_dssp STTEEEEEEEEECSSSSSEECCGGGE-EEEECSS---SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-
T ss_pred ccCeEEEEEEcccCCCCCCceEEEEe-cccccCC---ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-
Confidence 2 488899 77765332110 0001222 2233 7899999997665 2 22 368888887766
Q ss_pred ceeeccCCCccCEEEEEEccCCCEEEEEecC-----CcEEEeecCC--Ccc-eeecCCCcccCCCCCCCceeEEEEecCC
Q 001163 1011 LKQFVPREASGPITHATYSCDSQSIYVAFEE-----GSVGVLTAST--LRL-RCRINPTAYLPTNPSLRVYPLVIAGNPT 1082 (1134)
Q Consensus 1011 ~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D-----g~i~vwd~~~--~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~p~ 1082 (1134)
...+. .+...+..+.++ ||+.|+..+.+ +.+.+|.+.. +.. ...+... ..+|...+..+ +|+|
T Consensus 349 ~~~lt--~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~---~~~~~~~~~~~--~~s~- 419 (719)
T 1z68_A 349 AIQIT--SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCH---LRKERCQYYTA--SFSD- 419 (719)
T ss_dssp CEECS--CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTT---TTTTTBCBEEE--EECG-
T ss_pred eEecc--cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCc---cCCCCCceEEE--EECC-
Confidence 33443 445678888888 88887766654 8899998764 421 1222210 11244455554 7888
Q ss_pred CCCEEE-EEecC--CcEEEEeCCCCC
Q 001163 1083 DPNQFA-LGLTD--GGVYIIEPLEAE 1105 (1134)
Q Consensus 1083 ~~~~l~-s~~~D--g~v~vW~~~~~~ 1105 (1134)
|+++++ +++.+ ..+.+|++.+.+
T Consensus 420 dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 420 YAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp GGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred CCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 455555 45544 467888876544
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=1.5e-19 Score=218.77 Aligned_cols=272 Identities=15% Similarity=0.051 Sum_probs=196.4
Q ss_pred CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCC-CCEEEEEEcCCCCEEE
Q 001163 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT-ASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spd~~~la 434 (1134)
...|++++|||||++|+.++..||++.||++.+++... +..|. ..|.+++|||| ++++
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l~ 79 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVIL 79 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEEE
Confidence 45799999999999765444459999999997665433 34444 68999999999 7888
Q ss_pred EEeC---CCEEEEEEccC--CceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcC
Q 001163 435 VAYS---KHIVHLYTYHG--GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP 509 (1134)
Q Consensus 435 s~s~---dg~v~iwd~~~--~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~ 509 (1134)
+++. +....||.+.. ..... .+..+. .+...+|+|||+.+++++++.|+.. +||+.+++.......+.
T Consensus 80 ~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~-- 152 (582)
T 3o4h_A 80 VRDVSKGAEQHALFKVNTSRPGEEQ---RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG-- 152 (582)
T ss_dssp EEECSTTSCCEEEEEEETTSTTCCE---ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS--
T ss_pred EeccCCCCcceEEEEEeccCCCccc---cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC--
Confidence 7765 45566766543 22122 122222 3446799999987566666665554 99999987766554333
Q ss_pred EEEEeccccCCccEEEEecCC----CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC
Q 001163 510 VYSICPHHKENIQFIFSTATD----GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 585 (1134)
Q Consensus 510 v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 585 (1134)
.+++|+| ||++|++++.+ +.|++||+.+++.. .+..+...+..++|+|||+.|+++.. ++...|++||+.
T Consensus 153 -~~~~~sp--DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~~ 226 (582)
T 3o4h_A 153 -FGFVSDI--RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDPR 226 (582)
T ss_dssp -CEEEEEE--ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECTT
T ss_pred -ceEEECC--CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcCC
Confidence 5666654 56899988777 78999998876654 55666678899999999999995443 345579999999
Q ss_pred CCeeEEEecCCCCCceEEEE--------EcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEE
Q 001163 586 EGAVKRTYHGLGKRSVGVVQ--------FDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILL 657 (1134)
Q Consensus 586 ~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l 657 (1134)
+++.. .+..+.. .+..++ |+|||..+++++.+|.+++|++ ++.... . ...+.+++|+ +++++
T Consensus 227 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~--~~~v~~~~~s-dg~~l 296 (582)
T 3o4h_A 227 DGSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---P--QGNHGRVVLW-RGKLV 296 (582)
T ss_dssp TCCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---C--SSEEEEEEEE-TTEEE
T ss_pred CCcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---C--CCceEEEEec-CCEEE
Confidence 99887 6666544 555556 9999988889999999999999 655441 1 3467899999 99999
Q ss_pred EEEECCCc---EEEEEc
Q 001163 658 AVSTNDNG---IKILAN 671 (1134)
Q Consensus 658 ~~~~~dg~---i~iw~~ 671 (1134)
++++.+.. +.+|+.
T Consensus 297 ~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 297 TSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EEEEETTEEEEEEEETT
T ss_pred EEEcCCCCCCeEEEEcC
Confidence 88887744 555544
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=1.1e-18 Score=200.83 Aligned_cols=261 Identities=11% Similarity=0.048 Sum_probs=177.1
Q ss_pred CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE-
Q 001163 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG- 434 (1134)
Q Consensus 356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la- 434 (1134)
...++.+++++++. ++++|+.|+ |+||+........... .+.. ............|...|.+++|+|+|++||
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPG---DDPN-KIVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTT---CCTT-CEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccc---cCcc-cccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 34688999999998 557788887 8998864321100000 0000 000000011124677899999999999999
Q ss_pred ---EEeCCCEEEEEEccCC--------ceeeeeeeeecCCCCEEEEEEecC-CCceEEEEEeCCCeEEEEECCCCceeEE
Q 001163 435 ---VAYSKHIVHLYTYHGG--------DELRNHLEIEAHVGSVNDLAFSYP-NKQLSVVTCGEDRVIKVWDAVTGTKQYI 502 (1134)
Q Consensus 435 ---s~s~dg~v~iwd~~~~--------~~~~~~~~l~~h~~~V~~v~~s~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 502 (1134)
+|+.|+.|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.|++|++||++++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7888999999999765 222233457789999999999998 55 799999999999999999988777
Q ss_pred ecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCC-------CCCeeEEEECcCCCEEEEEecCC--
Q 001163 503 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP-------GHSSTMMAYSADGARLFSCGTNK-- 573 (1134)
Q Consensus 503 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~~~-- 573 (1134)
..+|...|.+++|+++ |.+|++|+.||.|++||++ ......+..+ ...+.+++|++++.++++.+...
T Consensus 188 ~~~~~~~v~~v~wspd--g~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 188 TLPSTVAVTSVCWSPK--GKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EECGGGCEEEEEECTT--SSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred ccCCCCceeEEEEcCC--CCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 7889999999999765 5899999999999999988 4444333322 12789999999888876654321
Q ss_pred -CCCeEEEEEeCCCCe-----eEEEec-------CCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcC
Q 001163 574 -EGESYLVEWNESEGA-----VKRTYH-------GLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMD 628 (1134)
Q Consensus 574 -~~~~~i~~wd~~~~~-----~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~ 628 (1134)
.....+++|++...+ ....+. +... ....+.+-++.+.+++++ ..+.|.+....
T Consensus 265 ~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 265 LETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp SSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred cCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEEec
Confidence 112358999987642 112221 1111 222333446777777766 45556666543
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=8.8e-19 Score=211.97 Aligned_cols=237 Identities=15% Similarity=0.156 Sum_probs=177.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEeC-CCEEEEEEccCCceeeeeeeeecCC-CCEEEEEEecCCCceEEEEEeC---CCeEEE
Q 001163 417 YTASVNRVMWSPDGTLFGVAYS-KHIVHLYTYHGGDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCGE---DRVIKV 491 (1134)
Q Consensus 417 h~~~V~~l~~spd~~~las~s~-dg~v~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~l~s~s~---d~~i~i 491 (1134)
+..+|++++|+|||++||+++. ||+++||++.+++..+ +..|. ..+..++|+|| + ++++++. +....+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~----lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l 92 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK----LNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHAL 92 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE----CCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe----eecccccccccccCCCC-e--EEEEeccCCCCcceEE
Confidence 4568999999999999999887 9999999997776432 45555 68999999998 5 6777765 455566
Q ss_pred EECCC---CceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEE
Q 001163 492 WDAVT---GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFS 568 (1134)
Q Consensus 492 wd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 568 (1134)
|.+.. +... .+..+. .+...+|++++++..+++++.++.. +||+.+++.......+. .+++|+|||++|++
T Consensus 93 ~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~ 166 (582)
T 3o4h_A 93 FKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG---FGFVSDIRGDLIAG 166 (582)
T ss_dssp EEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS---CEEEEEEETTEEEE
T ss_pred EEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC---ceEEECCCCCEEEE
Confidence 54432 3333 343222 2345677777765566666665554 99998765544433222 78999999999998
Q ss_pred EecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCC--eEEEEEcCCCceeEEEecCCCCCCcc
Q 001163 569 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF--MIKFWDMDNVNLLASIDADGGLQASP 646 (1134)
Q Consensus 569 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~ 646 (1134)
++.+..+...|++||+.+++.. .+..+.. .+..++|+|||+.|+++..++ .|++||+.+++.. .+..+ ...+.
T Consensus 167 ~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~ 241 (582)
T 3o4h_A 167 LGFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFS 241 (582)
T ss_dssp EEEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHH
T ss_pred EEEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChh
Confidence 8766444467999999988765 4555554 788999999999999888888 8999999998877 54433 44566
Q ss_pred eEE--------EcCCCcEEEEEECCCcEEEEEc
Q 001163 647 CIR--------FNKEGILLAVSTNDNGIKILAN 671 (1134)
Q Consensus 647 ~v~--------~sp~~~~l~~~~~dg~i~iw~~ 671 (1134)
.++ |+|||.++++++.++.+++|++
T Consensus 242 ~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 242 SYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 677 9999999999999999999997
No 156
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.81 E-value=4.3e-17 Score=183.06 Aligned_cols=246 Identities=10% Similarity=0.097 Sum_probs=171.4
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeC---CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEe-CCCeEEE
Q 001163 416 DYTASVNRVMWSPDGTLFGVAYS---KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKV 491 (1134)
Q Consensus 416 ~h~~~V~~l~~spd~~~las~s~---dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-~d~~i~i 491 (1134)
.+...+..++|+|||+ |++++. ++.|.+||+.+++. +....+..+...+..++|+|||+ +|++++ .++.|.+
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~p~~~a~spdg~--~l~~~~~~~~~v~v 112 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAPGTPPAYVAVDEARQ--LVYSANYHKGTAEV 112 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-EEEEEEEEESCCCSEEEEETTTT--EEEEEETTTTEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-EEeeeeecCCCCCEEEEECCCCC--EEEEEeCCCCEEEE
Confidence 3556788899999999 555543 68999999987763 33334556778899999999999 566666 7899999
Q ss_pred EECC-CCc--eeEEecC---------CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceee---ecC-CCCCee
Q 001163 492 WDAV-TGT--KQYIFEG---------HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD---YDA-PGHSST 555 (1134)
Q Consensus 492 wd~~-~~~--~~~~~~~---------h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~-~~~~v~ 555 (1134)
||+. ++. .+..+.. +...+.+++|+++ |+++++...++.|++|++...+.... ... ......
T Consensus 113 ~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spd--g~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~ 190 (347)
T 3hfq_A 113 MKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPD--NRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR 190 (347)
T ss_dssp EEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTT--SCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred EEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCC--CcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence 9996 332 3333322 1234788888654 46777777889999999983332221 122 233677
Q ss_pred EEEECcCCCEEEEEecCCCCCeEEEEEeCCC--Cee--EEEecCCCC-----CceEEEEEcCCCCEEEE-EeCCCeEEEE
Q 001163 556 MMAYSADGARLFSCGTNKEGESYLVEWNESE--GAV--KRTYHGLGK-----RSVGVVQFDTTKNRFLA-AGDEFMIKFW 625 (1134)
Q Consensus 556 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~~--~~~~~~~~~-----~~v~~~~~~~~~~~l~~-~~~dg~i~iw 625 (1134)
.++|+|||++++++.. ....+.+|++.. ++. +..+..... ..+..++|+|+|++|++ ...++.|.+|
T Consensus 191 ~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~ 267 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGE---LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVF 267 (347)
T ss_dssp EEEECTTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEE
T ss_pred eEEECCCCCEEEEEeC---CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEE
Confidence 8999999998877653 234688888763 543 233333221 24788999999998855 4578999999
Q ss_pred EcCCC---ceeEEEecCCCCCCcceEEEcCCCcEEEEEECC-CcEEEEEcc
Q 001163 626 DMDNV---NLLASIDADGGLQASPCIRFNKEGILLAVSTND-NGIKILANA 672 (1134)
Q Consensus 626 d~~~~---~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d-g~i~iw~~~ 672 (1134)
++... +.+..+..+ ...+..++|+|+|++|++++.+ +.+.+|++.
T Consensus 268 ~~~~~g~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 268 AVTADGHLTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EECGGGCEEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EECCCCcEEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 99732 344444433 3457899999999988888764 899999554
No 157
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=6.9e-18 Score=209.67 Aligned_cols=275 Identities=13% Similarity=0.089 Sum_probs=184.3
Q ss_pred CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCC-----CCEEEEEEcCCCCE
Q 001163 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT-----ASVNRVMWSPDGTL 432 (1134)
Q Consensus 358 ~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~l~~spd~~~ 432 (1134)
...+++|+|||+ +++++ ||+|++||+.+++.... +.+|. .....++|||||++
T Consensus 18 ~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~~ 75 (740)
T 4a5s_A 18 KLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQF 75 (740)
T ss_dssp CCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSSE
T ss_pred cccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCCE
Confidence 355899999997 55665 99999999999875432 23333 23345899999999
Q ss_pred EEEEeCC---------CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEE-
Q 001163 433 FGVAYSK---------HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI- 502 (1134)
Q Consensus 433 las~s~d---------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~- 502 (1134)
|++++.+ +.+.+||+.+++.. .+..|.+.+..++|||||+ .|+.+ .|+.|++||+.+++..+.
T Consensus 76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~--~la~~-~~~~i~~~~~~~~~~~~lt 148 (740)
T 4a5s_A 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRIT 148 (740)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECC
T ss_pred EEEEECCeeeEEEccceEEEEEECCCCcEE----EcccCCCcceeeEECCCCC--EEEEE-ECCeEEEEECCCCceEEEc
Confidence 9999886 56679999998744 3667888999999999999 46666 468999999988876542
Q ss_pred ecCCCcCE-----------------EEEeccccCCccEEEEecCCCc-EEEEecCCCCceeeecCCCCCeeEEEECcCCC
Q 001163 503 FEGHESPV-----------------YSICPHHKENIQFIFSTATDGK-IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGA 564 (1134)
Q Consensus 503 ~~~h~~~v-----------------~~~~~~~~~~~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 564 (1134)
..++...+ ..+.| ++||+.|+.++.|.+ +.+|++....... .+...+..+.+.+.|.
T Consensus 149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGA 223 (740)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTS
T ss_pred CCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCcC
Confidence 23343333 23566 456688888776554 8888764322111 1233566777777764
Q ss_pred EEEEEecCCCCCeEEEEEeCCC---Ce--eEEEecC-----CCCCceEEEEEcCCCCEEEEEe----CCCeEEEEEcCCC
Q 001163 565 RLFSCGTNKEGESYLVEWNESE---GA--VKRTYHG-----LGKRSVGVVQFDTTKNRFLAAG----DEFMIKFWDMDNV 630 (1134)
Q Consensus 565 ~l~~~~~~~~~~~~i~~wd~~~---~~--~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~ 630 (1134)
. .....|++||+.+ ++ ....+.. .+...+..++|+|||+.++... .+..|++||+.++
T Consensus 224 ~--------~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg 295 (740)
T 4a5s_A 224 V--------NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDES 295 (740)
T ss_dssp C--------CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETT
T ss_pred c--------CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCC
Confidence 3 2234599999998 73 2223332 1233688999999998766654 2347999999988
Q ss_pred c----e--eEEEecCCCCCCc-----ceEEEcCCCcEEE-EEEC-CC--cEEEEEccCC
Q 001163 631 N----L--LASIDADGGLQAS-----PCIRFNKEGILLA-VSTN-DN--GIKILANADG 674 (1134)
Q Consensus 631 ~----~--~~~~~~~~~~~~v-----~~v~~sp~~~~l~-~~~~-dg--~i~iw~~~~~ 674 (1134)
+ + +..+...++...+ ...+|+|||+.++ ..+. +| .|++|+..++
T Consensus 296 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 296 SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp TTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred ccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 7 1 1222111223333 3789999999877 6654 44 4666665543
No 158
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.80 E-value=9e-18 Score=191.98 Aligned_cols=297 Identities=10% Similarity=0.003 Sum_probs=195.2
Q ss_pred EEEee-cCCCeeE-----EEEcCCCCeEEEEEeCCC--cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCE
Q 001163 350 VMTLN-QGSAVKS-----MDFHPVQQILLVVGTNMG--DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASV 421 (1134)
Q Consensus 350 ~~~~~-h~~~V~~-----v~fsp~g~~lla~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 421 (1134)
...+. +...... .+|||||++|++++..+| .|.+||+.+++.... ..++...+
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-------------------t~~~~~~~ 83 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-------------------TEGRGDNT 83 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC-------------------CCSSCBCS
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe-------------------eeCCCCCc
Confidence 34444 4444555 899999998766655577 488889988875442 34565566
Q ss_pred EEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEE--EecCCCceEEEE-----------------
Q 001163 422 NRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLA--FSYPNKQLSVVT----------------- 482 (1134)
Q Consensus 422 ~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~--~s~~~~~~~l~s----------------- 482 (1134)
..++|||||++|+.++.++.|++||+.+++... ....+...+.... ++++++ +++.
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~ 158 (388)
T 3pe7_A 84 FGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKF 158 (388)
T ss_dssp SSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHH
T ss_pred cceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccccccchh
Confidence 678899999999999999999999999987543 2344555554444 488998 4543
Q ss_pred -----EeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCC------CcEEEEecCCCCceeeecCCC
Q 001163 483 -----CGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATD------GKIKAWLYDNLGSRVDYDAPG 551 (1134)
Q Consensus 483 -----~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~ 551 (1134)
.+.+..|.+||+.+++... +..+...+..+.|+|. +|..|+..+.+ ..|.++|..............
T Consensus 159 ~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 236 (388)
T 3pe7_A 159 HEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE 236 (388)
T ss_dssp HHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT
T ss_pred hhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC
Confidence 2345789999999987544 4446677888888651 44777666543 367777776544433332222
Q ss_pred -CCeeEEEECcCCCEEEEEecCC-CCCeEEEEEeCCCCeeEE--EecCCCC--CceEEEEEcCCCCEEEEE---------
Q 001163 552 -HSSTMMAYSADGARLFSCGTNK-EGESYLVEWNESEGAVKR--TYHGLGK--RSVGVVQFDTTKNRFLAA--------- 616 (1134)
Q Consensus 552 -~~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~~~~~--~~~~~~~--~~v~~~~~~~~~~~l~~~--------- 616 (1134)
..+..++|+|||+.|+..+... .....|++||+.+++... .+.++.. .......|+|||+.|+..
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 316 (388)
T 3pe7_A 237 GESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKI 316 (388)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------
T ss_pred CcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccccc
Confidence 2577889999999887765432 223359999999987433 3332100 001123699999888754
Q ss_pred eCCCeEEEEEcCCCceeEEEecCCCC--------CCcceEEEcCCCcEEEEEEC-CCcEEEEEcc
Q 001163 617 GDEFMIKFWDMDNVNLLASIDADGGL--------QASPCIRFNKEGILLAVSTN-DNGIKILANA 672 (1134)
Q Consensus 617 ~~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~v~~sp~~~~l~~~~~-dg~i~iw~~~ 672 (1134)
..+..|++||+.+++........... ..+.+++|+|||+.|+..+. +|...||.+.
T Consensus 317 ~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 317 ENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 45668999999988764433322100 14678899999998887664 6777777653
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=1.3e-17 Score=187.42 Aligned_cols=283 Identities=11% Similarity=0.058 Sum_probs=190.8
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE-EEeCC
Q 001163 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG-VAYSK 439 (1134)
Q Consensus 361 ~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la-s~s~d 439 (1134)
.++++++++ ++++++.++.|.+||+.+++.+.... .+....+..++|+|||++++ ++..+
T Consensus 4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~s~dg~~~~v~~~~~ 64 (349)
T 1jmx_B 4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCV------------------MPDKFGPGTAMMAPDNRTAYVLNNHY 64 (349)
T ss_dssp CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEE------------------CSSCCSSCEEEECTTSSEEEEEETTT
T ss_pred cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEe------------------cCCCCCCceeEECCCCCEEEEEeCCC
Confidence 456777776 67889999999999999987654311 11222577899999999665 45578
Q ss_pred CEEEEEEccCCceeeeeeeee-cC-----CCCEEEEEEecCCCceEEEEEeCC------------CeEEEEECCCCce--
Q 001163 440 HIVHLYTYHGGDELRNHLEIE-AH-----VGSVNDLAFSYPNKQLSVVTCGED------------RVIKVWDAVTGTK-- 499 (1134)
Q Consensus 440 g~v~iwd~~~~~~~~~~~~l~-~h-----~~~V~~v~~s~~~~~~~l~s~s~d------------~~i~iwd~~~~~~-- 499 (1134)
+.|.+||+.+++.... +. .+ ...+.+++|+|||+ ++++++.+ +.|.+||+.+++.
T Consensus 65 ~~i~~~d~~t~~~~~~---~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 139 (349)
T 1jmx_B 65 GDIYGIDLDTCKNTFH---ANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK 139 (349)
T ss_dssp TEEEEEETTTTEEEEE---EESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC
T ss_pred CcEEEEeCCCCcEEEE---EEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCccccc
Confidence 9999999999876542 32 22 23478899999999 67777654 8999999988543
Q ss_pred -eEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCC------------------------Ce
Q 001163 500 -QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH------------------------SS 554 (1134)
Q Consensus 500 -~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~------------------------~v 554 (1134)
+..+.. ...+.+++|++ +|. +++++. .|.+||+.+.+....+..... ..
T Consensus 140 ~~~~~~~-~~~~~~~~~s~--dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (349)
T 1jmx_B 140 PVRTFPM-PRQVYLMRAAD--DGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 213 (349)
T ss_dssp CSEEEEC-CSSCCCEEECT--TSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred eeeeccC-CCcccceeECC--CCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence 334443 33577787755 446 555543 499999987766554433210 22
Q ss_pred eEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEE-EecCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCce
Q 001163 555 TMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR-TYHGLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMDNVNL 632 (1134)
Q Consensus 555 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~ 632 (1134)
..+++++++....... .....+..+|..+++... .+.. ....+..++|+| ++++++++ ++.|++||+.+++.
T Consensus 214 ~~~~~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~ 287 (349)
T 1jmx_B 214 YTIARFKDDKQDPATA---DLLYGYLSVDLKTGKTHTQEFAD-LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKL 287 (349)
T ss_dssp EEEEEC-------CCC---EEEEEEEEEETTTCCEEEEEEEE-CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEE
T ss_pred eeeeecCCCcCCcccc---ccceeEEEEeccCCcEEeccccc-CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeE
Confidence 3455555543221110 011123346666654322 1222 223678899999 99999888 88999999999998
Q ss_pred eEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEecc
Q 001163 633 LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVES 683 (1134)
Q Consensus 633 ~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 683 (1134)
+..+... ..+.+++|+|+|++|++++.++.|.+||..++ +.+..+..
T Consensus 288 ~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~-~~~~~~~~ 334 (349)
T 1jmx_B 288 IKAANLD---HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNIKL 334 (349)
T ss_dssp EEEEECS---SCCCEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEEEC
T ss_pred EEEEcCC---CCccceEECCCCCEEEEecCCCeEEEEecccc-ceeeeeec
Confidence 8887643 24679999999998888888999999999887 55555543
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.80 E-value=1.3e-16 Score=180.12 Aligned_cols=308 Identities=11% Similarity=0.079 Sum_probs=191.7
Q ss_pred CCEEEEEe----CCCeEEEEEc--CCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECC----CcEEEEEccCCceeEE
Q 001163 610 KNRFLAAG----DEFMIKFWDM--DNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND----NGIKILANADGIRLLR 679 (1134)
Q Consensus 610 ~~~l~~~~----~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d----g~i~iw~~~~~~~~~~ 679 (1134)
..+++.|+ .++.|++|++ .+++....... +...+..++|+|+|++|++++.+ +.+.+|++......+.
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 34555664 4578999876 45654433322 24467789999999999998886 7999998765311111
Q ss_pred EeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeeccc
Q 001163 680 TVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEI 759 (1134)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~ 759 (1134)
.+.. ..
T Consensus 91 ~~~~------------------------------------------------------------------------~~-- 96 (361)
T 3scy_A 91 LLNT------------------------------------------------------------------------QK-- 96 (361)
T ss_dssp EEEE------------------------------------------------------------------------EE--
T ss_pred EeeE------------------------------------------------------------------------ec--
Confidence 1100 00
Q ss_pred CCccceeccccCCccccccEEEEEEecCCceeeeec-cCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCC
Q 001163 760 TEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA-SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS 838 (1134)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 838 (1134)
.+......+++ +|+++++++ .++.+.+|++..... ...... .+.....+... ..
T Consensus 97 --------------~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~-----~~~~~~-~~~~~g~~~~~---~~ 151 (361)
T 3scy_A 97 --------------TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGA-----LLPASD-VIEFKGSGPDK---ER 151 (361)
T ss_dssp --------------CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSC-----BCSCSE-EEECCCCCSCT---TT
T ss_pred --------------cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCc-----Ccccce-eEEccCCCCCc---cc
Confidence 01233455666 777776665 578999998863211 000000 00000000000 00
Q ss_pred CCCCCCCeeEEEEcCCCCeEEEee--CCeEEEEEccCCe-------E------EEEecCCCCCeEEEEEcCCCCcEEEEE
Q 001163 839 DTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFK-------T------MTTFMPPPPAATFLAFHPQDNNIIAIG 903 (1134)
Q Consensus 839 ~~~h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~-------~------~~~~~~~~~~v~~l~~sp~~~~~la~g 903 (1134)
.+...+.+++|+|||+++++++ ++.|++|++.... . ......+......++|+| ++++++++
T Consensus 152 --~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~ 228 (361)
T 3scy_A 152 --QTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLI 228 (361)
T ss_dssp --CSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEE
T ss_pred --cCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEE
Confidence 1344578899999999777665 6899999886433 1 122233455688999999 88877776
Q ss_pred e-CCCcEEEEEcccceE--EEe---ccCccCceEEEEEeeCCCEEEEEeC--CCcEEEEECC--CCccccceeeeecCCC
Q 001163 904 M-EDSSIQIYNVRVDEV--KTK---LKGHQKRITGLAFSNTLNVLVSSGA--DSQLCVWSTD--GWEKQASKFLTIPNGR 973 (1134)
Q Consensus 904 ~-~dg~i~iwd~~~~~~--~~~---l~~h~~~V~~l~~s~d~~~l~s~s~--Dg~i~iwd~~--~~~~~~~~~~~~~~~~ 973 (1134)
+ .++.|.+|++.+++. +.. ...+.....+++|+|||++|+++.. ++.|.+|++. +++...... ...+
T Consensus 229 ~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~--~~~g- 305 (361)
T 3scy_A 229 NEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGY--QLTG- 305 (361)
T ss_dssp ETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEE--EECS-
T ss_pred cCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeE--ecCC-
Confidence 6 689999999987754 222 2334456789999999999876665 4889999996 333222111 1112
Q ss_pred CCCCCCceEEEEcCCCCEEEEE--eeceEEEEeC--CCcccceeeccCCCccCEEEEEEc
Q 001163 974 TASALADTRVQFHLDQTHLLAV--HETQIAIYEA--PKLECLKQFVPREASGPITHATYS 1029 (1134)
Q Consensus 974 ~~~~~~v~~l~fs~dg~~l~~~--~d~~i~iwd~--~~~~~~~~~~~~~h~~~v~~~~~s 1029 (1134)
..+..++|+|||++|+++ .++.|.+|++ .+++...... ..+...+.|+.|.
T Consensus 306 ----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~-~~~~~~p~~v~~~ 360 (361)
T 3scy_A 306 ----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKK-DIKVDKPVCLKFV 360 (361)
T ss_dssp ----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSC-CEECSSEEEEEEE
T ss_pred ----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecce-eeeCCCCeEEEEc
Confidence 347889999999999885 4688999654 4665543321 1235678899886
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=4.1e-17 Score=202.75 Aligned_cols=330 Identities=9% Similarity=0.012 Sum_probs=213.5
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCC-CCc--ceEEEcCCCcEEEEEECC---------CcEE
Q 001163 600 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGL-QAS--PCIRFNKEGILLAVSTND---------NGIK 667 (1134)
Q Consensus 600 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v--~~v~~sp~~~~l~~~~~d---------g~i~ 667 (1134)
....+.|+|++.+++++ ||.|++||+.+++....+..+... ..+ ..++|||||++|+.++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 34578999999888886 899999999999987777655321 112 348999999999998876 4455
Q ss_pred EEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccc
Q 001163 668 ILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEA 747 (1134)
Q Consensus 668 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (1134)
+||+.++. .
T Consensus 96 ~~d~~~~~-~---------------------------------------------------------------------- 104 (740)
T 4a5s_A 96 IYDLNKRQ-L---------------------------------------------------------------------- 104 (740)
T ss_dssp EEETTTTE-E----------------------------------------------------------------------
T ss_pred EEECCCCc-E----------------------------------------------------------------------
Confidence 67766551 0
Q ss_pred ccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCC
Q 001163 748 VEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQP 827 (1134)
Q Consensus 748 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~ 827 (1134)
..+ ..+...+...+|||||+.|+.+ .++.|.+|++...
T Consensus 105 ------------------~~l----~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~------------------- 142 (740)
T 4a5s_A 105 ------------------ITE----ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNL------------------- 142 (740)
T ss_dssp ------------------CCS----SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTS-------------------
T ss_pred ------------------EEc----ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCC-------------------
Confidence 000 0134568899999999999888 4678999876532
Q ss_pred CCCcccccCCCCC------CCC---------CCeeEEEEcCCCCeEEEee-C-C--------------------------
Q 001163 828 PSGILMTNDISDT------NPE---------DAVPCFALSKNDSYVMSAS-G-G-------------------------- 864 (1134)
Q Consensus 828 ~~~~~~~~~~~~~------~h~---------~~v~~v~~s~dg~~la~~s-d-g-------------------------- 864 (1134)
........+. ++. .....++|||||++||..+ | .
T Consensus 143 ---~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp 219 (740)
T 4a5s_A 143 ---PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYP 219 (740)
T ss_dssp ---CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECC
T ss_pred ---ceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCC
Confidence 2111111110 011 2224589999999999874 2 2
Q ss_pred ---------eEEEEEccC---Ce--EEEEec------CCCCCeEEEEEcCCCCcEEEEEeC----CCcEEEEEcccce--
Q 001163 865 ---------KISLFNMMT---FK--TMTTFM------PPPPAATFLAFHPQDNNIIAIGME----DSSIQIYNVRVDE-- 918 (1134)
Q Consensus 865 ---------~i~lwd~~~---~~--~~~~~~------~~~~~v~~l~~sp~~~~~la~g~~----dg~i~iwd~~~~~-- 918 (1134)
+|++||+.+ ++ ....+. ++...+..++|+| |+++++.... +..|++||+.+++
T Consensus 220 ~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~ 298 (740)
T 4a5s_A 220 KAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGR 298 (740)
T ss_dssp BTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTE
T ss_pred CCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccc
Confidence 488899988 73 233343 2667799999999 7886665533 3479999999887
Q ss_pred --EEE--ec--cCccCceE-----EEEEeeCCCEEE-EEeC-C--CcEEEEECCCCccccceeeeecCCCCCCCCCceEE
Q 001163 919 --VKT--KL--KGHQKRIT-----GLAFSNTLNVLV-SSGA-D--SQLCVWSTDGWEKQASKFLTIPNGRTASALADTRV 983 (1134)
Q Consensus 919 --~~~--~l--~~h~~~V~-----~l~~s~d~~~l~-s~s~-D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l 983 (1134)
+.. .+ .+|...|. .++|+|||+.++ ..+. + ..|.+||+.+++ ..++..+.. .+..+
T Consensus 299 ~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~-----~~~lT~g~~----~v~~~ 369 (740)
T 4a5s_A 299 WNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD-----CTFITKGTW----EVIGI 369 (740)
T ss_dssp EEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS-----CEESCCSSS----CEEEE
T ss_pred cceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc-----eEecccCCE----EEEEE
Confidence 322 22 44655544 789999999887 6654 3 358888988755 233334332 24444
Q ss_pred EEcCCCCEEEE-Eee-------ceEEEEeCCCcccceeeccC--CCccCEEEEEEccCCCEEEEEecC---CcEEEeecC
Q 001163 984 QFHLDQTHLLA-VHE-------TQIAIYEAPKLECLKQFVPR--EASGPITHATYSCDSQSIYVAFEE---GSVGVLTAS 1050 (1134)
Q Consensus 984 ~fs~dg~~l~~-~~d-------~~i~iwd~~~~~~~~~~~~~--~h~~~v~~~~~s~dg~~l~s~s~D---g~i~vwd~~ 1050 (1134)
. ++|++.|+. +.. ..|+..++..++....+.+. +....+..+.|||||++++..... ..+.+++..
T Consensus 370 ~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~ 448 (740)
T 4a5s_A 370 E-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV 448 (740)
T ss_dssp E-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred E-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECC
Confidence 3 355776666 432 24555566554432233321 224578899999999987655433 468888988
Q ss_pred CCcceeec
Q 001163 1051 TLRLRCRI 1058 (1134)
Q Consensus 1051 ~~~~~~~~ 1058 (1134)
+++....+
T Consensus 449 ~~~~~~~l 456 (740)
T 4a5s_A 449 NDKGLRVL 456 (740)
T ss_dssp TTEEEEEE
T ss_pred CCcEEEEe
Confidence 77654443
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.79 E-value=2.5e-17 Score=185.24 Aligned_cols=253 Identities=13% Similarity=0.119 Sum_probs=183.2
Q ss_pred CceeEEEeecCC--CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccC-----C
Q 001163 346 PKTVVMTLNQGS--AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDY-----T 418 (1134)
Q Consensus 346 ~~~~~~~~~h~~--~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~ 418 (1134)
..+.+..+.... .+..++|+|+|+++++++..++.|.+||+.+++.+.... .++ .
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~------------------~~~~~~~~~ 91 (349)
T 1jmx_B 30 SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN------------------LSSVPGEVG 91 (349)
T ss_dssp TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE------------------SCCSTTEEE
T ss_pred CCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE------------------ccccccccc
Confidence 356666666444 789999999999887888889999999999887654311 111 3
Q ss_pred CCEEEEEEcCCCCEEEEEeCC------------CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC
Q 001163 419 ASVNRVMWSPDGTLFGVAYSK------------HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED 486 (1134)
Q Consensus 419 ~~V~~l~~spd~~~las~s~d------------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d 486 (1134)
..+.+++|+|||++|++++.+ +.|.+||+.+++.......+. +...+.+++|+|+|+ +++ ++
T Consensus 92 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~--l~~-~~-- 165 (349)
T 1jmx_B 92 RSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS--LYV-AG-- 165 (349)
T ss_dssp ECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC--EEE-ES--
T ss_pred ccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc--EEE-cc--
Confidence 347889999999999999865 899999999866444333333 444689999999998 444 33
Q ss_pred CeEEEEECCCCceeEEecCCCc------------------------CEEEEeccccCC---------ccEEEEecCCCcE
Q 001163 487 RVIKVWDAVTGTKQYIFEGHES------------------------PVYSICPHHKEN---------IQFIFSTATDGKI 533 (1134)
Q Consensus 487 ~~i~iwd~~~~~~~~~~~~h~~------------------------~v~~~~~~~~~~---------~~~l~s~s~dg~i 533 (1134)
+.|.+||+.+++.+..+..+.. ....+++.++.. ..++.....++.+
T Consensus 166 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 245 (349)
T 1jmx_B 166 PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT 245 (349)
T ss_dssp SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCE
T ss_pred CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcE
Confidence 3499999999998877754320 122344332110 0122234445666
Q ss_pred EEEecCCCCceeeecCCCCCeeEEEECc-CCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCE
Q 001163 534 KAWLYDNLGSRVDYDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNR 612 (1134)
Q Consensus 534 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 612 (1134)
++|++.. ....+..++++| ++++++++ +..|.+||+.+++.+..+.... .+..++|+|++++
T Consensus 246 ~~~~~~~---------~~~~~~~~~~sp~dg~~l~~~------~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~ 308 (349)
T 1jmx_B 246 HTQEFAD---------LTELYFTGLRSPKDPNQIYGV------LNRLAKYDLKQRKLIKAANLDH--TYYCVAFDKKGDK 308 (349)
T ss_dssp EEEEEEE---------CSSCEEEEEECSSCTTEEEEE------ESEEEEEETTTTEEEEEEECSS--CCCEEEECSSSSC
T ss_pred Eeccccc---------CCCcceeeEecCCCCCEEEEE------cCeEEEEECccCeEEEEEcCCC--CccceEECCCCCE
Confidence 6665532 344678999999 99999887 2259999999999888776543 4678999999999
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEEecC
Q 001163 613 FLAAGDEFMIKFWDMDNVNLLASIDAD 639 (1134)
Q Consensus 613 l~~~~~dg~i~iwd~~~~~~~~~~~~~ 639 (1134)
|++++.++.|++||..+++.+..+...
T Consensus 309 l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 309 LYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEEecCCCeEEEEeccccceeeeeecC
Confidence 998888999999999999999888765
No 163
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=2.5e-16 Score=177.81 Aligned_cols=272 Identities=13% Similarity=0.126 Sum_probs=183.9
Q ss_pred EEEEEe----CCCcEEEEecC--CccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCC----C
Q 001163 371 LLVVGT----NMGDVMLWEVG--SRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK----H 440 (1134)
Q Consensus 371 lla~gs----~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~d----g 440 (1134)
.+.+|+ .++.|.+|+++ +++..... .. +...+..++|+|||++|++++.+ +
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~------------------~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~ 75 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLS------------------DA-EVANPSYLIPSADGKFVYSVNEFSKDQA 75 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEEE------------------EE-ECSCCCSEEECTTSSEEEEEECCSSTTC
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEee------------------cc-cCCCCceEEECCCCCEEEEEEccCCCCC
Confidence 445664 45689999774 44432210 11 66788889999999999999886 7
Q ss_pred EEEEEEccCC-ceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe------cC--------
Q 001163 441 IVHLYTYHGG-DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF------EG-------- 505 (1134)
Q Consensus 441 ~v~iwd~~~~-~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~------~~-------- 505 (1134)
.|.+|++... ..+........+......+++ +++. ++++...++.|.+|++.....+..+ .+
T Consensus 76 ~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 152 (361)
T 3scy_A 76 AVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQ 152 (361)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTC
T ss_pred cEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcccc
Confidence 9999998763 224433345556667788888 7773 3444446889999999754433211 11
Q ss_pred CCcCEEEEeccccCCccEE-EEecCCCcEEEEecCCCCc------e-------eeecCCCCCeeEEEECcCCCEEEEEec
Q 001163 506 HESPVYSICPHHKENIQFI-FSTATDGKIKAWLYDNLGS------R-------VDYDAPGHSSTMMAYSADGARLFSCGT 571 (1134)
Q Consensus 506 h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~------~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~ 571 (1134)
+...+.+++|++ +|+++ ++...++.|.+|+++.... . ............++|+|||++++++..
T Consensus 153 ~~~~~~~~~~sp--dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 230 (361)
T 3scy_A 153 TMPHLHCVRITP--DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE 230 (361)
T ss_dssp SSCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CCCcceEEEECC--CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence 223457788865 55655 4555689999999886542 1 112233456789999999998887763
Q ss_pred CCCCCeEEEEEeCCCCee--EEEecCCC--CCceEEEEEcCCCCEEEEEeC--CCeEEEEEcC--CCc--eeEEEecCCC
Q 001163 572 NKEGESYLVEWNESEGAV--KRTYHGLG--KRSVGVVQFDTTKNRFLAAGD--EFMIKFWDMD--NVN--LLASIDADGG 641 (1134)
Q Consensus 572 ~~~~~~~i~~wd~~~~~~--~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~--~~~--~~~~~~~~~~ 641 (1134)
.+..|.+||+.+++. +..+.... ......++|+|++++|+++.. ++.|.+|++. +++ .+..+..
T Consensus 231 ---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--- 304 (361)
T 3scy_A 231 ---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--- 304 (361)
T ss_dssp ---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC---
T ss_pred ---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC---
Confidence 244699999987754 33332221 124678999999999977775 5899999996 455 3333432
Q ss_pred CCCcceEEEcCCCcEEEEEE-CCCcEEEEEcc
Q 001163 642 LQASPCIRFNKEGILLAVST-NDNGIKILANA 672 (1134)
Q Consensus 642 ~~~v~~v~~sp~~~~l~~~~-~dg~i~iw~~~ 672 (1134)
...+..++|+|+|++|++++ .++.|.+|.+.
T Consensus 305 g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 305 GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 23578999999999888887 67899997665
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=9.4e-18 Score=191.85 Aligned_cols=254 Identities=10% Similarity=-0.019 Sum_probs=176.5
Q ss_pred cccCCCCEEE-----EEEcCCCCEEEEEeC-CC--EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC
Q 001163 414 SSDYTASVNR-----VMWSPDGTLFGVAYS-KH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE 485 (1134)
Q Consensus 414 ~~~h~~~V~~-----l~~spd~~~las~s~-dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~ 485 (1134)
+..|...+.. .+|||||++||.++. ++ .|.+||+.+++... ...+|...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 4556666666 899999999999987 66 48888998887543 2445655566788999999 7888888
Q ss_pred CCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEe----------------------cCCCcEEEEecCCCCc
Q 001163 486 DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST----------------------ATDGKIKAWLYDNLGS 543 (1134)
Q Consensus 486 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------------------s~dg~i~vwd~~~~~~ 543 (1134)
++.|++||+.+++....+..+...+....+..++++.+++.. ..+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 999999999999887777766666655555446677777642 2446799999987654
Q ss_pred eeeecCCCCCeeEEEECc-CCCEEEEEecCCC--CCeEEEEEeCCCCeeEEEecCCCC-CceEEEEEcCCCCEEEEEe-C
Q 001163 544 RVDYDAPGHSSTMMAYSA-DGARLFSCGTNKE--GESYLVEWNESEGAVKRTYHGLGK-RSVGVVQFDTTKNRFLAAG-D 618 (1134)
Q Consensus 544 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~ 618 (1134)
.. +..+...+..+.|+| ||+.|+.+..... ....|+++|...+.... +..+.. ..+...+|+|||+.|+..+ .
T Consensus 181 ~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 181 TV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp EE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred EE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCCcccccceECCCCCEEEEEecC
Confidence 43 333455688999999 9999988765321 13468889987665443 333332 2577789999999776654 2
Q ss_pred CC----eEEEEEcCCCceeEEEecCCCC---CCcceEEEcCCCcEEEEE---------ECCCcEEEEEccCC
Q 001163 619 EF----MIKFWDMDNVNLLASIDADGGL---QASPCIRFNKEGILLAVS---------TNDNGIKILANADG 674 (1134)
Q Consensus 619 dg----~i~iwd~~~~~~~~~~~~~~~~---~~v~~v~~sp~~~~l~~~---------~~dg~i~iw~~~~~ 674 (1134)
++ .|++||+.+++........+.. ......+|+|||+.|+.. ..+..|++|++.++
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 22 3999999998754433322100 012334799999888754 44668999998876
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.76 E-value=1.9e-16 Score=178.80 Aligned_cols=248 Identities=9% Similarity=0.061 Sum_probs=171.2
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEEEcc-CCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEe-----------
Q 001163 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYH-GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG----------- 484 (1134)
Q Consensus 417 h~~~V~~l~~spd~~~las~s~dg~v~iwd~~-~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s----------- 484 (1134)
....+..++|+|||++|++++.+ .|.+|++. +++... ......+ +.+.+++|+|||+.+++++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 33468889999999999999888 89999997 776432 1122211 235668999999853355553
Q ss_pred --CCCeEEEEECC-CCceeEEec----CCCcCEEEEeccccCCccEEEEec-CCCcEEEEecC-CCCcee--eecC--CC
Q 001163 485 --EDRVIKVWDAV-TGTKQYIFE----GHESPVYSICPHHKENIQFIFSTA-TDGKIKAWLYD-NLGSRV--DYDA--PG 551 (1134)
Q Consensus 485 --~d~~i~iwd~~-~~~~~~~~~----~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~vwd~~-~~~~~~--~~~~--~~ 551 (1134)
.++++.+|++. +|+....+. .+...+.+++|++ +|+++++++ .++.|++|+++ +++... .+.. +.
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC--CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 68999999997 466554443 2456788898865 457777655 46899999998 444322 2221 25
Q ss_pred CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC--CCeeE---EEecCCC----C-C-------ceEEEE-EcCCCCEE
Q 001163 552 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNES--EGAVK---RTYHGLG----K-R-------SVGVVQ-FDTTKNRF 613 (1134)
Q Consensus 552 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~~---~~~~~~~----~-~-------~v~~~~-~~~~~~~l 613 (1134)
..+..++|+|||++++++... +..|.+|+.. +++.. ..+.... . . .+..++ |+|||++|
T Consensus 193 ~~p~~~~~spdg~~l~v~~~~---~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALMEA---GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETT---TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCEeEECCCCCEEEEEECC---CCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 578899999999999887642 3357777654 56543 2222111 1 1 377899 99999998
Q ss_pred EEEeCC-C-----eEEEEEcC-CCceeEE---EecCCCCCCcceEEEcC---CCcEEEEEECC-CcEEEEEccCC
Q 001163 614 LAAGDE-F-----MIKFWDMD-NVNLLAS---IDADGGLQASPCIRFNK---EGILLAVSTND-NGIKILANADG 674 (1134)
Q Consensus 614 ~~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~sp---~~~~l~~~~~d-g~i~iw~~~~~ 674 (1134)
++++.+ . .|.+|++. +++.... ...+ ...+..++|+| +|++|++++.+ +.|.+|++...
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~--~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC--CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 877632 2 89999996 5665432 2222 33467899999 89999998864 89999998765
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.76 E-value=5.6e-16 Score=174.92 Aligned_cols=270 Identities=9% Similarity=0.095 Sum_probs=176.5
Q ss_pred EEEE--eCCCCeeEE--EecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC-CCceeEEEecCCCCCCcceEEEcCC
Q 001163 579 LVEW--NESEGAVKR--TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD-NVNLLASIDADGGLQASPCIRFNKE 653 (1134)
Q Consensus 579 i~~w--d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~sp~ 653 (1134)
|.+| |..+++... .........+..++|+|++++|++++.+ .|.+|++. +++.......... .....++|+|+
T Consensus 16 i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spd 93 (365)
T 1jof_A 16 IFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTN 93 (365)
T ss_dssp EEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSC
T ss_pred EEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCC
Confidence 5554 456675432 2211122256789999999999999887 99999997 7776544332111 23567999999
Q ss_pred CcE--EEEEE-------------CCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCC
Q 001163 654 GIL--LAVST-------------NDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGE 718 (1134)
Q Consensus 654 ~~~--l~~~~-------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 718 (1134)
|++ ++++. .+|.+.+|++.........+..
T Consensus 94 g~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~----------------------------------- 138 (365)
T 1jof_A 94 TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQN----------------------------------- 138 (365)
T ss_dssp CEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEE-----------------------------------
T ss_pred CCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEee-----------------------------------
Confidence 994 44542 5788888887632122111110
Q ss_pred CCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeecc-C
Q 001163 719 RTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS-N 797 (1134)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~-d 797 (1134)
+. ..+...+.+++|+|||++++++.. +
T Consensus 139 -----------------------------------~~-----------------~~~~~~~~~~~~spdG~~l~~~~~~~ 166 (365)
T 1jof_A 139 -----------------------------------YE-----------------YQENTGIHGMVFDPTETYLYSADLTA 166 (365)
T ss_dssp -----------------------------------EE-----------------CCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred -----------------------------------EE-----------------eCCCCcceEEEECCCCCEEEEEcCCC
Confidence 00 002356789999999998877654 6
Q ss_pred CeEEeeecCCCCCCcccccccCCCCcccCCCCCccccc-CCCCCCCCCCeeEEEEcCCCCeEEEee--CCeEEEEEcc--
Q 001163 798 AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTN-DISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMM-- 872 (1134)
Q Consensus 798 g~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~-- 872 (1134)
+.|.+|++.. +++.... .+....+...+..++|+|||+++++++ ++.|.+|++.
T Consensus 167 ~~v~~~~~~~---------------------~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~ 225 (365)
T 1jof_A 167 NKLWTHRKLA---------------------SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp TEEEEEEECT---------------------TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred CEEEEEEECC---------------------CCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC
Confidence 7899998751 1211100 010001345688999999999988776 5889999875
Q ss_pred CCeEE---EEec---C----CCC------CeEEEE-EcCCCCcEEEEEeCCC------cEEEEEcc-cceEEE---eccC
Q 001163 873 TFKTM---TTFM---P----PPP------AATFLA-FHPQDNNIIAIGMEDS------SIQIYNVR-VDEVKT---KLKG 925 (1134)
Q Consensus 873 ~~~~~---~~~~---~----~~~------~v~~l~-~sp~~~~~la~g~~dg------~i~iwd~~-~~~~~~---~l~~ 925 (1134)
+++.. ..+. . +.. .+..++ |+| ||++|+++..+. .|.+|++. +++... ....
T Consensus 226 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~ 304 (365)
T 1jof_A 226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT 304 (365)
T ss_dssp TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred CCcEEEccceEEcCCCCcCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeec
Confidence 56543 1222 1 121 488999 999 888887765432 89999996 666543 2334
Q ss_pred ccCceEEEEEee---CCCEEEEEeCC-CcEEEEECCCC
Q 001163 926 HQKRITGLAFSN---TLNVLVSSGAD-SQLCVWSTDGW 959 (1134)
Q Consensus 926 h~~~V~~l~~s~---d~~~l~s~s~D-g~i~iwd~~~~ 959 (1134)
+...+..++|+| ||++|++++.+ +.|.+|+++..
T Consensus 305 ~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 305 PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 555677899999 89999998865 89999998874
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=1.2e-15 Score=171.21 Aligned_cols=219 Identities=11% Similarity=0.044 Sum_probs=154.0
Q ss_pred CeeEEEEcCCCCeEEEee---CCeEEEEEccCCeEEEE-ecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc-ceE
Q 001163 845 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMTT-FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-DEV 919 (1134)
Q Consensus 845 ~v~~v~~s~dg~~la~~s---dg~i~lwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~-~~~ 919 (1134)
....++++|||++|+++. +++|.+||+.+++.+.+ +.. .....+.+.|+++..+++.+.||.+.+|++.. ++.
T Consensus 109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~--~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~ 186 (361)
T 2oiz_A 109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA--AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKV 186 (361)
T ss_dssp CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG--TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSE
T ss_pred CcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC--CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcE
Confidence 345788999999988875 36899999999988887 542 23334667784557888899999999999865 554
Q ss_pred EE------eccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecC------CCCCCCCCceEEEEcC
Q 001163 920 KT------KLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPN------GRTASALADTRVQFHL 987 (1134)
Q Consensus 920 ~~------~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~~v~~l~fs~ 987 (1134)
.. .+..+..++ .+.+++++..++..+.++.|.++|+............... +..+ .....++|+|
T Consensus 187 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p--~g~~~~a~~~ 263 (361)
T 2oiz_A 187 ASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVP--GGYNLVGLHR 263 (361)
T ss_dssp EEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEE--CCSSCEEEET
T ss_pred eeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccccc--CCeeEEEEec
Confidence 41 223333332 3455788888888888999999999765422111111110 0000 1223478999
Q ss_pred CCCEEEEEe------------eceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCC--c
Q 001163 988 DQTHLLAVH------------ETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTL--R 1053 (1134)
Q Consensus 988 dg~~l~~~~------------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~--~ 1053 (1134)
|++.++++. .++|.+||+.+++.+..+.. +. +.+++|+|||++|++++. ++|.+||+.++ +
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~--~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~ 338 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG--RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPK 338 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC--TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCE
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec--CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcce
Confidence 999888753 24899999999999998873 33 899999999999998887 99999999999 8
Q ss_pred ceeecCCCcccCCCCCCCceeEEEEecCC
Q 001163 1054 LRCRINPTAYLPTNPSLRVYPLVIAGNPT 1082 (1134)
Q Consensus 1054 ~~~~~~~~~~~~~~h~~~v~~~~~~~~p~ 1082 (1134)
.+.++... .. .+..++++|+
T Consensus 339 ~~~~i~~~-------G~--~P~~~~~~p~ 358 (361)
T 2oiz_A 339 LLRTIEGA-------AE--ASLQVQFHPV 358 (361)
T ss_dssp EEEEETTS-------CS--SEEEEEECCC
T ss_pred eeEEeccC-------CC--CcEEEEecCC
Confidence 87775311 11 2455677883
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.74 E-value=1.2e-15 Score=171.09 Aligned_cols=303 Identities=9% Similarity=0.079 Sum_probs=202.4
Q ss_pred CCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEec------CCCCCeEEEEEeCCCCeeEEEecCCC-----
Q 001163 529 TDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGT------NKEGESYLVEWNESEGAVKRTYHGLG----- 597 (1134)
Q Consensus 529 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------~~~~~~~i~~wd~~~~~~~~~~~~~~----- 597 (1134)
.|+.|.+||..+.+....+.....+ .++|+|||++++++.. .++.+..|.+||..+++.+.++....
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 4789999999887766655544333 8999999999998763 11234579999999999888776431
Q ss_pred CCceEEEEEcCCCCEEEEEeC--CCeEEEEEcCCCceeEE-EecCCCCCCcceEEEcCCC-cEEEEEECCCcEEEEEccC
Q 001163 598 KRSVGVVQFDTTKNRFLAAGD--EFMIKFWDMDNVNLLAS-IDADGGLQASPCIRFNKEG-ILLAVSTNDNGIKILANAD 673 (1134)
Q Consensus 598 ~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~sp~~-~~l~~~~~dg~i~iw~~~~ 673 (1134)
......++++|+|++|+++.. ++.|.+||+.+++.+.. +...+ ...+.+.|++ ..+++.+.||.+.+|+...
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~ 182 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFMTICGDGGLLTINLGE 182 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEEEEETTSSEEEEEECT
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEEEECCCCcEEEEEECC
Confidence 124567899999999999873 68999999999988877 54321 1235677765 6788899999999998865
Q ss_pred CceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccce
Q 001163 674 GIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRI 753 (1134)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i 753 (1134)
.......... ..+
T Consensus 183 ~g~~~~~~~~-------------------------------------------------------------------~~~ 195 (361)
T 2oiz_A 183 DGKVASQSRS-------------------------------------------------------------------KQM 195 (361)
T ss_dssp TSSEEEEEEC-------------------------------------------------------------------CCC
T ss_pred CCcEeeeccc-------------------------------------------------------------------cce
Confidence 3222211100 001
Q ss_pred eeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCccc
Q 001163 754 WKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILM 833 (1134)
Q Consensus 754 w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 833 (1134)
|+... .. ..+.+++++..++..+.++.+.++++....... +..|++......
T Consensus 196 ~~~~~------------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~---------~~~~~~~~~~~~ 247 (361)
T 2oiz_A 196 FSVKD------------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV---------DGPWSLLNDEDK 247 (361)
T ss_dssp SCTTT------------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE---------EEEEESCCHHHH
T ss_pred EcCCC------------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee---------cccccccCcccc
Confidence 11100 00 011224555555555666777777764221000 000111110000
Q ss_pred ccCCCCCCCCCCeeEEEEcCCCCeEEEee------------CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEE
Q 001163 834 TNDISDTNPEDAVPCFALSKNDSYVMSAS------------GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIA 901 (1134)
Q Consensus 834 ~~~~~~~~h~~~v~~v~~s~dg~~la~~s------------dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la 901 (1134)
.... .......++|+||++.+.++. .++|.+||+.+++.+.++..+. +.+++|+| ++++|+
T Consensus 248 ~~~~----~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~ 320 (361)
T 2oiz_A 248 AKNW----VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLML 320 (361)
T ss_dssp HTTC----EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEE
T ss_pred cccc----ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEE
Confidence 0000 011122478999988777653 2479999999999999998776 99999999 888888
Q ss_pred EEeCCCcEEEEEcccc--eEEEeccCccCceEEEEEeeCCC
Q 001163 902 IGMEDSSIQIYNVRVD--EVKTKLKGHQKRITGLAFSNTLN 940 (1134)
Q Consensus 902 ~g~~dg~i~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d~~ 940 (1134)
++.. +.|.+||..++ +.+.++..+......++++|+|.
T Consensus 321 v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 321 TLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 8886 99999999999 99999877777788999999985
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.73 E-value=4.2e-16 Score=178.64 Aligned_cols=282 Identities=10% Similarity=-0.019 Sum_probs=185.8
Q ss_pred eeEEEEcCCCCeEEEEEeCCC--cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001163 359 VKSMDFHPVQQILLVVGTNMG--DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 436 (1134)
Q Consensus 359 V~~v~fsp~g~~lla~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~ 436 (1134)
+.+++|||||++++++...++ .|.+||+.+++.... ..++......+.|||||++|+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l-------------------~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL-------------------TEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC-------------------CCSSCBCTTTCEECTTSSEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe-------------------ecCCCCccccceECCCCCEEEEE
Confidence 788999999998766665544 688889988764331 12222223347899999999999
Q ss_pred eCCCEEEEEEccCCceeeeeeeeecCCCCEEE-------------------EEEecCCCceEEEEE-----eCCCeEEEE
Q 001163 437 YSKHIVHLYTYHGGDELRNHLEIEAHVGSVND-------------------LAFSYPNKQLSVVTC-----GEDRVIKVW 492 (1134)
Q Consensus 437 s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~-------------------v~~s~~~~~~~l~s~-----s~d~~i~iw 492 (1134)
+.++.|.+||+.+++... ....+...... +.|+|+++. ++.. ..+..|.+|
T Consensus 99 ~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp ETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTCCCEEEEEE
T ss_pred EcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCCCcceEEEE
Confidence 999999999999886433 22223332222 356777773 3332 456789999
Q ss_pred ECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCC------CcEEEEecCCCCceeeecCC-CCCeeEEEECcCCCE
Q 001163 493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATD------GKIKAWLYDNLGSRVDYDAP-GHSSTMMAYSADGAR 565 (1134)
Q Consensus 493 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~ 565 (1134)
|+.+++..... .+...+..+.|++. ++..|+..+.+ ..|.+||+............ ...+..++|+|||++
T Consensus 174 d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~ 251 (396)
T 3c5m_A 174 DIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA 251 (396)
T ss_dssp ETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSC
T ss_pred ECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCE
Confidence 99988766544 46677888888652 33555554433 36888887654433332211 225778999999998
Q ss_pred EEEEecCC-CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcC-CCCEEEEEe----------------CCCeEEEEEc
Q 001163 566 LFSCGTNK-EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT-TKNRFLAAG----------------DEFMIKFWDM 627 (1134)
Q Consensus 566 l~~~~~~~-~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~----------------~dg~i~iwd~ 627 (1134)
|+..+.+. .....|++||+.+++........ ... +.|+| +++.+++++ .++.|++||+
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 252 MAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp EEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred EEEEecCCCCccceEEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 87775432 22245999999988765433221 223 88999 999888754 3478999999
Q ss_pred CCCceeEEEecCCCCC---------CcceEEEcCCCcEEEEEEC-CCcEEEEEc
Q 001163 628 DNVNLLASIDADGGLQ---------ASPCIRFNKEGILLAVSTN-DNGIKILAN 671 (1134)
Q Consensus 628 ~~~~~~~~~~~~~~~~---------~v~~v~~sp~~~~l~~~~~-dg~i~iw~~ 671 (1134)
.+++... +..+.... .+..++|+|+|+.|+..+. ++...+|.+
T Consensus 328 ~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 328 KAKSAQK-LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp TTTBCCE-EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccCceEE-ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 8887543 33221100 2467899999998887765 555555554
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.71 E-value=4.1e-16 Score=178.70 Aligned_cols=306 Identities=16% Similarity=0.067 Sum_probs=189.0
Q ss_pred eeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcee
Q 001163 554 STMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL 633 (1134)
Q Consensus 554 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 633 (1134)
+..++|+|||++|+..... ++...|++||+.+++......+... ....+.|+|++++|+.++.++.|++||+.+++..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~-~g~~~l~~~d~~~~~~~~l~~~~~~-~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDF-DGNRNYYLLNLETQQAVQLTEGKGD-NTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp TTSCCBCTTSCEEEEEECT-TSSCEEEEEETTTTEEEECCCSSCB-CTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred eecCcCCCCCCEEEEEEec-CCCceEEEEECCCCcEEEeecCCCC-ccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence 6678999999998887643 3455799999998876554333321 2333789999999999998899999999988766
Q ss_pred EEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccc
Q 001163 634 ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVG 713 (1134)
Q Consensus 634 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 713 (1134)
.....+.. |+++|+.|+....++...+|..
T Consensus 116 ~~~~~~~~--------~~~~g~~l~~~~~~~~~~~~~~------------------------------------------ 145 (396)
T 3c5m_A 116 VIYTVDEE--------WKGYGTWVANSDCTKLVGIEIL------------------------------------------ 145 (396)
T ss_dssp EEEECCTT--------EEEEEEEEECTTSSEEEEEEEE------------------------------------------
T ss_pred EEEecccc--------cCCCCCEEEeccCCcccccccc------------------------------------------
Confidence 55543211 5666666665544433332210
Q ss_pred cCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeee
Q 001163 714 TSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILA 793 (1134)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~ 793 (1134)
.+.++|+++.++.
T Consensus 146 -------------------------------------------------------------------~~~~spdg~~~~~ 158 (396)
T 3c5m_A 146 -------------------------------------------------------------------KRDWQPLTSWEKF 158 (396)
T ss_dssp -------------------------------------------------------------------GGGCCCCCSHHHH
T ss_pred -------------------------------------------------------------------ccccCCCCcceee
Confidence 0123455554444
Q ss_pred ec-----cCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcC-CCCeEEEee-C---
Q 001163 794 LA-----SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK-NDSYVMSAS-G--- 863 (1134)
Q Consensus 794 ~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~-dg~~la~~s-d--- 863 (1134)
.. .+..+.+|++. +++..... . +...+..++|+| |++.|+..+ +
T Consensus 159 ~~~~~~~~~~~l~~~d~~----------------------~g~~~~~~--~--~~~~~~~~~~sp~dg~~l~~~~~~~~~ 212 (396)
T 3c5m_A 159 AEFYHTNPTCRLIKVDIE----------------------TGELEVIH--Q--DTAWLGHPIYRPFDDSTVGFCHEGPHD 212 (396)
T ss_dssp HHHHHTCCCEEEEEEETT----------------------TCCEEEEE--E--ESSCEEEEEEETTEEEEEEEEECSCSS
T ss_pred eeeccCCCcceEEEEECC----------------------CCcEEeec--c--CCcccccceECCCCCCEEEEEecCCCC
Confidence 32 34455555443 22221111 1 455678899999 888777665 2
Q ss_pred ---CeEEEEEccCCeEEEEecCCC--CCeEEEEEcCCCCcEEEEEeCC-----CcEEEEEcccceEEEeccCccCceEEE
Q 001163 864 ---GKISLFNMMTFKTMTTFMPPP--PAATFLAFHPQDNNIIAIGMED-----SSIQIYNVRVDEVKTKLKGHQKRITGL 933 (1134)
Q Consensus 864 ---g~i~lwd~~~~~~~~~~~~~~--~~v~~l~~sp~~~~~la~g~~d-----g~i~iwd~~~~~~~~~l~~h~~~V~~l 933 (1134)
..|.+||+.+++.. .+..+. ..+..++|+| ++++|+.++.+ +.|++||+.+++...... ... .. +
T Consensus 213 ~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~ 287 (396)
T 3c5m_A 213 LVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-H 287 (396)
T ss_dssp SCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-E
T ss_pred CCCceEEEEECCCCcee-EeeccCCCccccceEECC-CCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-C
Confidence 36889998765533 333232 3578899999 78877766544 459999998886543221 111 23 8
Q ss_pred EEee-CCCEEEEEe----------------CCCcEEEEECCCCccccceeeeecCCCC-----CCCCCceEEEEcCCCCE
Q 001163 934 AFSN-TLNVLVSSG----------------ADSQLCVWSTDGWEKQASKFLTIPNGRT-----ASALADTRVQFHLDQTH 991 (1134)
Q Consensus 934 ~~s~-d~~~l~s~s----------------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~v~~l~fs~dg~~ 991 (1134)
.|+| ||+++++++ .+..|++||+.+++.. .+....... .....+..++|+|||+.
T Consensus 288 ~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 364 (396)
T 3c5m_A 288 LMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ---KLCKHSTSWDVLDGDRQITHPHPSFTPNDDG 364 (396)
T ss_dssp EEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC---EEEECCCCCCCBTTBSSTTCCCCEECTTSSE
T ss_pred CccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE---EccCCCCccccccccccCCCCCceEccCCCe
Confidence 9999 999988765 3478999999886632 122111100 00012456789999999
Q ss_pred EEEEe--ece--EEEEeCCCcccce
Q 001163 992 LLAVH--ETQ--IAIYEAPKLECLK 1012 (1134)
Q Consensus 992 l~~~~--d~~--i~iwd~~~~~~~~ 1012 (1134)
|+.+. ++. |+++++.+++...
T Consensus 365 l~~~s~~~~~~~l~~~~~~~~~~~~ 389 (396)
T 3c5m_A 365 VLFTSDFEGVPAIYIADVPESYKHL 389 (396)
T ss_dssp EEEEECTTSSCEEEEEECCTTCC--
T ss_pred EEEEecCCCCceEEEEEEccccccc
Confidence 88743 343 5555666555433
No 171
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.68 E-value=1.1e-14 Score=163.32 Aligned_cols=273 Identities=11% Similarity=0.119 Sum_probs=182.8
Q ss_pred CCeeEEEEcCCCCeEEEEE--------eCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163 357 SAVKSMDFHPVQQILLVVG--------TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 428 (1134)
Q Consensus 357 ~~V~~v~fsp~g~~lla~g--------s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 428 (1134)
..+..++| ||++++.+. ..++.|.+||+.+++... + ..+.+++|||
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~Sp 68 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISP 68 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECC
Confidence 45667788 888776543 225679999998876422 2 4688999999
Q ss_pred CCCEEEEEeCC---C--EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC------------------
Q 001163 429 DGTLFGVAYSK---H--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE------------------ 485 (1134)
Q Consensus 429 d~~~las~s~d---g--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~------------------ 485 (1134)
||++||.++.+ + .|.+||+.+++... +..+.. +..++|+|||+ .|+.++.
T Consensus 69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 69 DGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSS--EEEEEEECCCC---------CCCC-
T ss_pred CCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCC--EEEEEEccCCCcCCcEEEcccceee
Confidence 99999988754 3 47888888876433 333334 99999999999 4555543
Q ss_pred ---------CCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCC-------cEEEEecCCCCceeeecC
Q 001163 486 ---------DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDG-------KIKAWLYDNLGSRVDYDA 549 (1134)
Q Consensus 486 ---------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-------~i~vwd~~~~~~~~~~~~ 549 (1134)
...|.+||+.+++.+..+.. . .+..++|+ ++| ++++++.++ ...+|.++ .+....+..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~ 215 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFE 215 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEE
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeC-CCceEEecc
Confidence 25799999998887455544 3 67777775 556 777775542 44566555 333333333
Q ss_pred CCCCeeEEEECcCCCEEEEEecCCC----CCeEEEEEeCCCCeeEEEecCCCCCceEE-EEEcCCCCEEEEEeCCCeEEE
Q 001163 550 PGHSSTMMAYSADGARLFSCGTNKE----GESYLVEWNESEGAVKRTYHGLGKRSVGV-VQFDTTKNRFLAAGDEFMIKF 624 (1134)
Q Consensus 550 ~~~~v~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~i 624 (1134)
+ ..+.. ++|||++|+..+.+.. ....|++|| +++.......+.. .+.. +.|+ ++ .+++++.++.+++
T Consensus 216 ~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~-~~~~~~~~s-dg-~~~~~~~~~~~~l 287 (347)
T 2gop_A 216 K-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR-GVGQAKIKD-GK-VYFTLFEEGSVNL 287 (347)
T ss_dssp E-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS-EEEEEEEET-TE-EEEEEEETTEEEE
T ss_pred C-cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc-ccCCccEEc-Cc-EEEEEecCCcEEE
Confidence 3 33433 4999999988775431 235688999 5655444444333 6775 8999 88 8888889999999
Q ss_pred EEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcE-EEEEccCCceeEEEeccCc
Q 001163 625 WDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI-KILANADGIRLLRTVESRT 685 (1134)
Q Consensus 625 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i-~iw~~~~~~~~~~~~~~~~ 685 (1134)
| +.+++....+. + ...|.+++|+| .++++++.++.. .+|.+. + . ...+..+.
T Consensus 288 ~-~~~g~~~~~~~-~--~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g-~-~~~lt~~n 340 (347)
T 2gop_A 288 Y-IWDGEIKPIAK-G--RHWIMGFDVDE--IVVYLKETATRLRELFTWD-G-E-EKQLTDYN 340 (347)
T ss_dssp E-EESSSEEEEEC-S--SSEEEEEEESS--SEEEEEECSSSCCEEEEES-S-S-EEECCCTT
T ss_pred E-EcCCceEEEec-C--CCeEEeeeeeC--cEEEEEcCCCChHHheEeC-C-c-EEEecccc
Confidence 9 87666544332 2 45788999999 677777777665 778776 4 2 34444443
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.68 E-value=2.2e-14 Score=155.81 Aligned_cols=241 Identities=12% Similarity=0.099 Sum_probs=175.1
Q ss_pred CCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecC------CCCCeEEEEEc-CCCCcEEEEEeC-CCcEEEE
Q 001163 842 PEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMP------PPPAATFLAFH-PQDNNIIAIGME-DSSIQIY 912 (1134)
Q Consensus 842 h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~------~~~~v~~l~~s-p~~~~~la~g~~-dg~i~iw 912 (1134)
+-..+.+++++++|+++++.. ++.|.+||.. ++.+..+.. +...+..++++ + ++.++++... ++.|++|
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~-~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEE
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC-CCeEEEEcCCCCCEEEEE
Confidence 456788999999999888876 7899999986 666666642 33568999995 5 7777776643 8899999
Q ss_pred EcccceEEEecc-CccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCE
Q 001163 913 NVRVDEVKTKLK-GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTH 991 (1134)
Q Consensus 913 d~~~~~~~~~l~-~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~ 991 (1134)
+ .+++.+..+. .+...+.+++++++|+++++...++.|.+||..... . ..+... +.. ..+..++++++|++
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~--~~~~~~-~~~---~~p~~i~~~~~g~l 177 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV-L--HKFGCS-KHL---EFPNGVVVNDKQEI 177 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-E--EEEECT-TTC---SSEEEEEECSSSEE
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCE-E--EEeCCC-Ccc---CCcEEEEECCCCCE
Confidence 9 5677666664 344678999999999988888888999999965421 1 111111 111 35789999999997
Q ss_pred EEEE-eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCC-cEEEeecCCCcceeecCCCcccCCCCC
Q 001163 992 LLAV-HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEG-SVGVLTASTLRLRCRINPTAYLPTNPS 1069 (1134)
Q Consensus 992 l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg-~i~vwd~~~~~~~~~~~~~~~~~~~h~ 1069 (1134)
+++. .++.|++||.. ++.+..+...++...+..+++++||+++++...++ .|.+||. +++.+..+... .
T Consensus 178 ~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~-------~ 248 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK-------V 248 (286)
T ss_dssp EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES-------S
T ss_pred EEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc-------C
Confidence 7664 57899999974 55555665334446789999999999988888786 9999995 56655554421 1
Q ss_pred CCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163 1070 LRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus 1070 ~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
....+..++++| +++++++ +.|++|++|++..
T Consensus 249 ~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 249 KHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp CCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSC
T ss_pred CCCcceeEEECC-CCcEEEE-CCCCeEEEEEccc
Confidence 112344567888 6776666 6799999999854
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.68 E-value=6.1e-15 Score=163.52 Aligned_cols=252 Identities=13% Similarity=0.071 Sum_probs=184.3
Q ss_pred CCCeeEEEEcCCCCeEEEee-C------------------------CeEEEEEccCCeEEEEec-CCCCCeEEEEEcCCC
Q 001163 843 EDAVPCFALSKNDSYVMSAS-G------------------------GKISLFNMMTFKTMTTFM-PPPPAATFLAFHPQD 896 (1134)
Q Consensus 843 ~~~v~~v~~s~dg~~la~~s-d------------------------g~i~lwd~~~~~~~~~~~-~~~~~v~~l~~sp~~ 896 (1134)
-+.+.+++++++|+++++.. + ++|.+||..+++.+..+. ++......++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 46789999999999998887 4 379999999999887765 3446789999999 8
Q ss_pred CcEEEEEeCCCcEEEEEcccce-EEEec---------cCccCceEEEEEee-CCCEEEEEe-CCCcEEEEECCCCccccc
Q 001163 897 NNIIAIGMEDSSIQIYNVRVDE-VKTKL---------KGHQKRITGLAFSN-TLNVLVSSG-ADSQLCVWSTDGWEKQAS 964 (1134)
Q Consensus 897 ~~~la~g~~dg~i~iwd~~~~~-~~~~l---------~~h~~~V~~l~~s~-d~~~l~s~s-~Dg~i~iwd~~~~~~~~~ 964 (1134)
++++++...++.|++|+..... .+..+ .++-.....++|+| ++.++++.+ .++.|++|+.+. +...
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~- 179 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVT- 179 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEE-
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEE-
Confidence 8899888889999999976442 44444 34555789999999 888888886 699999999543 3211
Q ss_pred eeeeec-CCC---CCCCCCceEEEEcCC-CCEEEEE-eeceEEEEeCCCcccceeeccCCCccCEEEEEEcc------CC
Q 001163 965 KFLTIP-NGR---TASALADTRVQFHLD-QTHLLAV-HETQIAIYEAPKLECLKQFVPREASGPITHATYSC------DS 1032 (1134)
Q Consensus 965 ~~~~~~-~~~---~~~~~~v~~l~fs~d-g~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~------dg 1032 (1134)
.+... .+. .........++++|+ |.++++. .+++|++||..+++.+..+....+...+.+++|+| +|
T Consensus 180 -~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g 258 (329)
T 3fvz_A 180 -QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNG 258 (329)
T ss_dssp -EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEEC
T ss_pred -EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCC
Confidence 11111 000 001134789999999 5555553 67899999999999988887656778899999999 33
Q ss_pred CEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCC
Q 001163 1033 QSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus 1033 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
+..++...+..|++|++.+++.+..+.... ++..... .++++| ++.++++...+++|++|++....
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~----~~~~~p~--~ia~~~-dG~lyvad~~~~~I~~~~~~~~~ 324 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVR----KHFDMPH--DIVASE-DGTVYIGDAHTNTVWKFTLTEKM 324 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEECCSS----SCCSSEE--EEEECT-TSEEEEEESSSCCEEEEEEEECS
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEEcCCC----CccCCee--EEEECC-CCCEEEEECCCCEEEEEeCCccc
Confidence 333333345589999999999887765221 2333344 457888 67899999999999999987544
No 174
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.67 E-value=2.1e-13 Score=160.27 Aligned_cols=332 Identities=13% Similarity=0.062 Sum_probs=223.9
Q ss_pred cCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC--CCeeEEEecC
Q 001163 518 KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES--EGAVKRTYHG 595 (1134)
Q Consensus 518 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~~~~~~~ 595 (1134)
++.+.++++...++.|.++|..+.+....+.. +..+..+.|+|||+++++++. ++.|.+||+. +++.+.++..
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~----dg~V~viD~~~~t~~~v~~i~~ 238 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGR----DGKVNMIDLWMKEPTTVAEIKI 238 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEET----TSEEEEEETTSSSCCEEEEEEC
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcC----CCeEEEEECCCCCCcEeEEEec
Confidence 33446778888899999999998877666653 335668999999999998864 3469999996 8888877765
Q ss_pred CCCCceEEEEEc----CCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCC---------CCCcceEEEcCCCcE-EEEE
Q 001163 596 LGKRSVGVVQFD----TTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGG---------LQASPCIRFNKEGIL-LAVS 660 (1134)
Q Consensus 596 ~~~~~v~~~~~~----~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~v~~sp~~~~-l~~~ 660 (1134)
.. ....++|+ |||+++++++ .++.|.++|..+.+.+..+...+. ...+..+..++++.. ++..
T Consensus 239 G~--~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~ 316 (567)
T 1qks_A 239 GS--EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 316 (567)
T ss_dssp CS--EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred CC--CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe
Confidence 33 46789999 6999999887 569999999999999888764211 113445555555433 2333
Q ss_pred ECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccc
Q 001163 661 TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVK 740 (1134)
Q Consensus 661 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1134)
..+|.|.++|..+..
T Consensus 317 ~~~g~v~~vd~~~~~----------------------------------------------------------------- 331 (567)
T 1qks_A 317 KETGKILLVDYTDLN----------------------------------------------------------------- 331 (567)
T ss_dssp TTTTEEEEEETTCSS-----------------------------------------------------------------
T ss_pred cCCCeEEEEecCCCc-----------------------------------------------------------------
Confidence 334555555443220
Q ss_pred cccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCC
Q 001163 741 PKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQ 820 (1134)
Q Consensus 741 ~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 820 (1134)
.+.+..+.
T Consensus 332 ----------------------------------------------------------~~~v~~i~-------------- 339 (567)
T 1qks_A 332 ----------------------------------------------------------NLKTTEIS-------------- 339 (567)
T ss_dssp ----------------------------------------------------------EEEEEEEE--------------
T ss_pred ----------------------------------------------------------cceeeeee--------------
Confidence 00000000
Q ss_pred CCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee--CCeEEEEEccCCeEEEEecC-----CCCCeEEEEEc
Q 001163 821 APQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMP-----PPPAATFLAFH 893 (1134)
Q Consensus 821 ~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~-----~~~~v~~l~~s 893 (1134)
.......+.|+|||++++++. +++|.++|+.+++.+..+.. |.+.-..+ ++
T Consensus 340 ---------------------~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~ 397 (567)
T 1qks_A 340 ---------------------AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VH 397 (567)
T ss_dssp ---------------------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EE
T ss_pred ---------------------ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-EC
Confidence 122345778999999887776 68899999999988777653 32222222 57
Q ss_pred CCCCcEEEEEe-CCCcEEEEEccc-------ceEEEeccCccCceEEEEEeeCCCEEEEEeC-------CCcEEEEECCC
Q 001163 894 PQDNNIIAIGM-EDSSIQIYNVRV-------DEVKTKLKGHQKRITGLAFSNTLNVLVSSGA-------DSQLCVWSTDG 958 (1134)
Q Consensus 894 p~~~~~la~g~-~dg~i~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-------Dg~i~iwd~~~ 958 (1134)
|+++.+++++. .++.|.++|..+ .+.++++......-..+.++|++++|..... ...|.++|+.+
T Consensus 398 p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~ 477 (567)
T 1qks_A 398 PTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKA 477 (567)
T ss_dssp TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGG
T ss_pred CCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCc
Confidence 83355555553 468999999987 5677877765443345778999999988663 35899999987
Q ss_pred Ccc---c-cceeeeecC--CCCCCCCCceEEEEcCCCCEEEEE-e-----eceEEEEeCCCcccceeec
Q 001163 959 WEK---Q-ASKFLTIPN--GRTASALADTRVQFHLDQTHLLAV-H-----ETQIAIYEAPKLECLKQFV 1015 (1134)
Q Consensus 959 ~~~---~-~~~~~~~~~--~~~~~~~~v~~l~fs~dg~~l~~~-~-----d~~i~iwd~~~~~~~~~~~ 1015 (1134)
.+. . ....+.+.+ +.......+..+.|++||+++.++ . ++.|.|+|.++++.+..+.
T Consensus 478 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 478 MTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp CCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 621 1 112332210 000011357899999999998885 2 6899999999999887775
No 175
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.66 E-value=7e-13 Score=155.86 Aligned_cols=275 Identities=16% Similarity=0.118 Sum_probs=195.9
Q ss_pred CeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEcc
Q 001163 369 QILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYH 448 (1134)
Q Consensus 369 ~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~ 448 (1134)
..++++...++.|.++|..+++.+... .....+..++|||||+++++++.|+.|.+||+.
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i--------------------~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~ 226 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVL--------------------DTGYAVHISRLSASGRYLFVIGRDGKVNMIDLW 226 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEE--------------------ECSSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEE--------------------eCCCCccceEECCCCCEEEEEcCCCeEEEEECC
Confidence 346778888999999999999877531 123367799999999999999999999999996
Q ss_pred --CCceeeeeeeeecCCCCEEEEEEe----cCCCceEEEEEeCCCeEEEEECCCCceeEEecCC-----------CcCEE
Q 001163 449 --GGDELRNHLEIEAHVGSVNDLAFS----YPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH-----------ESPVY 511 (1134)
Q Consensus 449 --~~~~~~~~~~l~~h~~~V~~v~~s----~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h-----------~~~v~ 511 (1134)
+++.+. .+.... ....++|+ |||+. ++++...+++|.++|..+.+.+.++... ...+.
T Consensus 227 ~~t~~~v~---~i~~G~-~P~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva 301 (567)
T 1qks_A 227 MKEPTTVA---EIKIGS-EARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA 301 (567)
T ss_dssp SSSCCEEE---EEECCS-EEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEE
T ss_pred CCCCcEeE---EEecCC-CCceeEEccccCCCCCE-EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceE
Confidence 666554 343322 36789999 69995 4455556799999999999998876522 12567
Q ss_pred EEeccccCCccEEEEecCCCcEEEEecCCCCceeeec-CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeE
Q 001163 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590 (1134)
Q Consensus 512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 590 (1134)
.+..++.. ..++++...+|.|.++|........... ........+.|+|+|++++++... ...|.++|..+++.+
T Consensus 302 ~i~~s~~~-~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~---sn~V~ViD~~t~kl~ 377 (567)
T 1qks_A 302 AILASHYR-PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA---RNKLVVIDTKEGKLV 377 (567)
T ss_dssp EEEECSSS-SEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG---GTEEEEEETTTTEEE
T ss_pred EEEEcCCC-CEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCC---CCeEEEEECCCCcEE
Confidence 77665543 3567777888999999987654222211 123356688999999999887643 346999999999988
Q ss_pred EEecC-CCCC-ceEEE-EEcCCCCEEEEEe--CCCeEEEEEcCC-------CceeEEEecCCCCCCcceEEEcCCCcEEE
Q 001163 591 RTYHG-LGKR-SVGVV-QFDTTKNRFLAAG--DEFMIKFWDMDN-------VNLLASIDADGGLQASPCIRFNKEGILLA 658 (1134)
Q Consensus 591 ~~~~~-~~~~-~v~~~-~~~~~~~~l~~~~--~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~v~~sp~~~~l~ 658 (1134)
..+.. .... +-... .++|++..+++.+ .++.|.++|..+ .+.+..+...+. .-..+..+|+++++.
T Consensus 378 ~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~--g~~~i~~~p~~~~l~ 455 (567)
T 1qks_A 378 AIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG--GSLFIKTHPNSQYLY 455 (567)
T ss_dssp EEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCEECCTTCSEEE
T ss_pred EEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC--CCEEEEeCCCCCeEE
Confidence 77754 2211 11122 2578755555444 568999999988 567788775432 224588999999998
Q ss_pred EEEC-------CCcEEEEEccCC
Q 001163 659 VSTN-------DNGIKILANADG 674 (1134)
Q Consensus 659 ~~~~-------dg~i~iw~~~~~ 674 (1134)
+... .++|.++|+.+.
T Consensus 456 v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 456 VDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EECTTCSSHHHHTCEEEEEGGGC
T ss_pred EecCCCCCcccCceEEEEECCcc
Confidence 8663 358999998764
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.66 E-value=1.7e-14 Score=177.60 Aligned_cols=253 Identities=9% Similarity=-0.023 Sum_probs=176.3
Q ss_pred cccccCCCCEEEEEEcCCCCEEEEE--eCCCEEEEEEccCCceeeeeeeeecCCCCEE---------EEEEe--cCCCce
Q 001163 412 SLSSDYTASVNRVMWSPDGTLFGVA--YSKHIVHLYTYHGGDELRNHLEIEAHVGSVN---------DLAFS--YPNKQL 478 (1134)
Q Consensus 412 ~~~~~h~~~V~~l~~spd~~~las~--s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~---------~v~~s--~~~~~~ 478 (1134)
..+.+|...|..++|++++-++++. +.++...||....+...+ .+..|...+. ...|+ |||+.+
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL 93 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCCeE
Confidence 3467899999999999887777777 568899999965444333 4666766666 66676 999831
Q ss_pred EEEEEe-CCCeEEEEECC--CCceeEEecC-----CCcCEEEEeccccCCccEEEEecCC----------CcEEEEecCC
Q 001163 479 SVVTCG-EDRVIKVWDAV--TGTKQYIFEG-----HESPVYSICPHHKENIQFIFSTATD----------GKIKAWLYDN 540 (1134)
Q Consensus 479 ~l~s~s-~d~~i~iwd~~--~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~s~d----------g~i~vwd~~~ 540 (1134)
|+.++ .+..|.+|++. .+.....+.. |...+.+++|++ ||+.|++++.+ ..|++||+..
T Consensus 94 -la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 94 -LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP--ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp -EEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET--TTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred -EEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC--CCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 44443 35677777765 2034455555 667788888865 55888888876 5899999987
Q ss_pred C-----Cceeeec-CCCCCeeEEEECcCCCEEEEEecCCC----CCeEEEEEeCC-CC---eeEEEecCCCCCceEEEEE
Q 001163 541 L-----GSRVDYD-APGHSSTMMAYSADGARLFSCGTNKE----GESYLVEWNES-EG---AVKRTYHGLGKRSVGVVQF 606 (1134)
Q Consensus 541 ~-----~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~-~~---~~~~~~~~~~~~~v~~~~~ 606 (1134)
. +....+. .+...+..++|||||++|+..+.+.. ....|++||+. ++ +......++. ..+..+.|
T Consensus 171 ~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~-~~~~~~~~ 249 (662)
T 3azo_A 171 SAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE-EAIAQAEW 249 (662)
T ss_dssp TTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT-BCEEEEEE
T ss_pred CccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC-ceEcceEE
Confidence 2 2333344 44457788999999999998876542 23579999999 57 4443333333 37889999
Q ss_pred cCCCCEEEEEeCCC--eEEEEEcCCCceeEEEecCCCC------CCcceEEEcCCCcEEEEEECCCcEEEEEcc
Q 001163 607 DTTKNRFLAAGDEF--MIKFWDMDNVNLLASIDADGGL------QASPCIRFNKEGILLAVSTNDNGIKILANA 672 (1134)
Q Consensus 607 ~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 672 (1134)
+|||+.+++++.++ .|++||..+++.......+... ..+..++|+|+++++++++. +.++||.+.
T Consensus 250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred CCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 99999777777788 6777777677654433322111 01567899999999999988 999999543
No 177
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.65 E-value=9.4e-10 Score=137.61 Aligned_cols=586 Identities=10% Similarity=0.045 Sum_probs=338.8
Q ss_pred CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001163 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (1134)
Q Consensus 356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las 435 (1134)
...|+++.-.++|.. -.|+.+| +..||-.. ++.+....... ..-....|.++...++|.+.+.
T Consensus 42 ~n~v~~I~qD~~G~l--WigT~~G-L~ryDG~~--------f~~~~~~~~~~------~~l~~n~I~~i~~d~~g~lWig 104 (795)
T 4a2l_A 42 QSTVFSIDQDKRGNM--WFATYDG-VNKYDGYA--------FTVYQHNEDDP------NSIANDISRIVKTDSQGRVWIG 104 (795)
T ss_dssp SSCEEEEEECTTSCE--EEEETTE-EEEECSSC--------EEEECCCTTCT------TSCSCSCEEEEEECTTSCEEEE
T ss_pred cceeEEEEEcCCCCE--EEeecCc-CcccCCCc--------eEEEeCCCCCC------CcccccceeEEEECCCCCEEEE
Confidence 357899999999973 3566666 56666432 22222110000 0012457999999999886654
Q ss_pred EeCCCEEEEEEccCCceeeeeeeeecCC-CCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCC-CcC-EEE
Q 001163 436 AYSKHIVHLYTYHGGDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH-ESP-VYS 512 (1134)
Q Consensus 436 ~s~dg~v~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h-~~~-v~~ 512 (1134)
+.+| +..||..+++. .......... ..|.++...++|. +.+ ++. +.+..||..+++......++ ... |.+
T Consensus 105 -T~~G-l~~yd~~~~~f-~~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i~~ 177 (795)
T 4a2l_A 105 -TRDG-LSRYDEEKDIF-QNFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKTIAS 177 (795)
T ss_dssp -ESSC-EEEEETTTTEE-EEECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTCCEE
T ss_pred -eCCc-hheeCCCCCeE-EeccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcceEE
Confidence 4555 89999887652 2111110100 1288898888886 333 444 56899998776543211111 123 777
Q ss_pred EeccccCCccEEEEecCCCcEEEEecCCCCceeee-cCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEE
Q 001163 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR 591 (1134)
Q Consensus 513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 591 (1134)
+... .++. +..++.++-|..|+.......... ......|.++...+++...+....++ +..||..+++...
T Consensus 178 i~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~G-----l~~~~~~~~~~~~ 249 (795)
T 4a2l_A 178 TLYR--QGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAG-----LFLINPKTKEIKN 249 (795)
T ss_dssp EEEE--ETTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSC-----EEEEETTTTEEEE
T ss_pred EEEC--CCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCC-----eEEEeCCCCeEEE
Confidence 7653 3334 555666556888887655433221 12245688888888887665542222 8999988776544
Q ss_pred EecCC------CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC-----CCCCCcceEEEcCCCcEEEEE
Q 001163 592 TYHGL------GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD-----GGLQASPCIRFNKEGILLAVS 660 (1134)
Q Consensus 592 ~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~sp~~~~l~~~ 660 (1134)
..... ....|.++...++|...+ |+.+ .|.+||..+++........ -....|.++...++|.+- .|
T Consensus 250 ~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-ig 326 (795)
T 4a2l_A 250 YLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LG 326 (795)
T ss_dssp ECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EE
T ss_pred eecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EE
Confidence 32221 123688888888876554 4444 5889998877644332211 112468888888888654 57
Q ss_pred ECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccc
Q 001163 661 TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVK 740 (1134)
Q Consensus 661 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1134)
+.++.|..|+..+.. +..+.....
T Consensus 327 t~~~Gl~~~~~~~~~--~~~~~~~~~------------------------------------------------------ 350 (795)
T 4a2l_A 327 TYFGGLNYYHPIRNR--FKNIRNIPY------------------------------------------------------ 350 (795)
T ss_dssp ESSSCEEEECGGGGS--SEEECCCTT------------------------------------------------------
T ss_pred ECCCCeEEeCCCccc--ceEEcCCCC------------------------------------------------------
Confidence 777778888765431 111110000
Q ss_pred cccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCC
Q 001163 741 PKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQ 820 (1134)
Q Consensus 741 ~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 820 (1134)
........|.++...++|.. -+|+.++-+..|+...
T Consensus 351 ------------------------------~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~------------- 386 (795)
T 4a2l_A 351 ------------------------------KNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPIT------------- 386 (795)
T ss_dssp ------------------------------SSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTTT-------------
T ss_pred ------------------------------CCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCCC-------------
Confidence 00012356888888888874 4456565566665432
Q ss_pred CCcccCCCCCcccccCCCC-----CCCCCCeeEEEEcCCCC-eEEEeeCCeEEEEEccCCeEEEEec----CCCCCeEEE
Q 001163 821 APQLWQPPSGILMTNDISD-----TNPEDAVPCFALSKNDS-YVMSASGGKISLFNMMTFKTMTTFM----PPPPAATFL 890 (1134)
Q Consensus 821 ~~~~~d~~~~~~~~~~~~~-----~~h~~~v~~v~~s~dg~-~la~~sdg~i~lwd~~~~~~~~~~~----~~~~~v~~l 890 (1134)
+......... .-....|.+++..++|+ +.+...++.|..||..+++...-.. .....|.++
T Consensus 387 ---------~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i 457 (795)
T 4a2l_A 387 ---------QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAI 457 (795)
T ss_dssp ---------CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEE
T ss_pred ---------CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEE
Confidence 2111110000 00246789999999998 5544446789999998876543322 134578999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEEcccceEEEecc------CccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccc
Q 001163 891 AFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK------GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQAS 964 (1134)
Q Consensus 891 ~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~------~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~ 964 (1134)
...+ ++.+.+. +. +.+.+|+..+++...... .....|.++...++|.+.+... + .|..||..+++.
T Consensus 458 ~~d~-~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~--- 529 (795)
T 4a2l_A 458 LPDG-EGNLWLG-TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI--- 529 (795)
T ss_dssp EECS-SSCEEEE-ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE---
T ss_pred EECC-CCCEEEE-ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE---
Confidence 9888 6765554 44 458899988776543221 1236789999998898776554 4 488999876542
Q ss_pred eeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCC-CccCEEEEEEccCCCEEEEEecCCc
Q 001163 965 KFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPRE-ASGPITHATYSCDSQSIYVAFEEGS 1043 (1134)
Q Consensus 965 ~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~s~s~Dg~ 1043 (1134)
...............|.++...++|.+.+++. +.+..||..+++...--...+ ....|.++...++|.+.+++ . +-
T Consensus 530 ~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~G 606 (795)
T 4a2l_A 530 QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EGFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST-N-RG 606 (795)
T ss_dssp EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SCEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE-T-TE
T ss_pred EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CCceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc-C-Cc
Confidence 11100011111124688999999998666554 478899987665432111111 14568999999999877655 3 45
Q ss_pred EEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163 1044 VGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus 1044 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
|..|+..+++.. .+....-++ ...+..-++...+ ++ .|..|+.+| +..+++..
T Consensus 607 l~~~~~~~~~~~-~~~~~dGl~---~~~f~~~~~~~~~-~G-~l~~g~~~G-l~~~~p~~ 659 (795)
T 4a2l_A 607 ISCFNPETEKFR-NFTESDGLQ---SNQFNTASYCRTS-VG-QMYFGGING-ITTFRPEL 659 (795)
T ss_dssp EEEEETTTTEEE-EECGGGTCS---CSCEEEEEEEECT-TS-CEEEEETTE-EEEECGGG
T ss_pred eEEEcCCCCcEE-EcCCcCCCc---cccCccCceeECC-CC-eEEEecCCc-eEEEcHHH
Confidence 788898776543 232221121 1222222334444 44 455677777 56666543
No 178
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.65 E-value=1.5e-10 Score=144.78 Aligned_cols=534 Identities=8% Similarity=0.032 Sum_probs=318.5
Q ss_pred CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001163 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (1134)
Q Consensus 356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las 435 (1134)
...|.++...++|... .|+.+| +..||..+++...- ... .......|.++...++|.+.+.
T Consensus 87 ~n~I~~i~~d~~g~lW--igT~~G-l~~yd~~~~~f~~~------~~~----------~~~~~~~i~~i~~d~~g~lwi~ 147 (795)
T 4a2l_A 87 NDISRIVKTDSQGRVW--IGTRDG-LSRYDEEKDIFQNF------FYE----------KNGKHLQVNGIEEISPEQLLIS 147 (795)
T ss_dssp CSCEEEEEECTTSCEE--EEESSC-EEEEETTTTEEEEE------CCE----------ETTEECCCCEEEEEETTEEEEE
T ss_pred ccceeEEEECCCCCEE--EEeCCc-hheeCCCCCeEEec------ccc----------ccCCCceEEEEEECCCCCEEEE
Confidence 3579999999999843 455544 89999877643221 000 0000012889999888887765
Q ss_pred EeCCCEEEEEEccCCceeeeeeeeecC-CCC-EEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe-cCCCcCEEE
Q 001163 436 AYSKHIVHLYTYHGGDELRNHLEIEAH-VGS-VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EGHESPVYS 512 (1134)
Q Consensus 436 ~s~dg~v~iwd~~~~~~~~~~~~l~~h-~~~-V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~ 512 (1134)
. .+ .|..||..+++... . ..++ ... |.++...+++. +..++.++.|..||..+++..... ..+...|.+
T Consensus 148 t-~~-gl~~~~~~~~~~~~-~--~~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~ 219 (795)
T 4a2l_A 148 T-PE-GLIMFDIKESKFID-D--SFSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQA 219 (795)
T ss_dssp E-TT-EEEEEETTTTEEEC-S--SSCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEE
T ss_pred E-CC-ceEEEECCCCEEEe-c--cCCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEE
Confidence 4 34 48899987764221 1 0011 123 88888888876 444666556889998777654321 123456887
Q ss_pred EeccccCCccEEEEecCCCcEEEEecCCCCceeeec-------CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC
Q 001163 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-------APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 585 (1134)
Q Consensus 513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 585 (1134)
+... .++. |..++.++-+..||..+........ .....|.++...++|...+... ++ |.+||..
T Consensus 220 i~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-~G-----l~~~~~~ 290 (795)
T 4a2l_A 220 ILQQ--SPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-ND-----LNIYHEG 290 (795)
T ss_dssp EEEE--ETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-SC-----EEEEETT
T ss_pred EEEc--CCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-Ch-----hheEcCC
Confidence 7653 3434 5555555458888876543322211 1234689999998888666542 22 8999988
Q ss_pred CCeeEEEecC------CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC----CCCCCcceEEEcCCCc
Q 001163 586 EGAVKRTYHG------LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD----GGLQASPCIRFNKEGI 655 (1134)
Q Consensus 586 ~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~v~~sp~~~ 655 (1134)
+++....... .....|.++...++|. |..|+.++-|..|+..++......... -....|.++...++|.
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~ 369 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN 369 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC
Confidence 7765543321 1223688898888876 556677778899987665433221111 0134578888888876
Q ss_pred EEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCcc
Q 001163 656 LLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRN 735 (1134)
Q Consensus 656 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 735 (1134)
+. .|+.++.|..|+..++. +..+.....
T Consensus 370 lW-iGt~~~Gl~~~~~~~~~--~~~~~~~~~------------------------------------------------- 397 (795)
T 4a2l_A 370 LW-IGTNDGGLNLYNPITQR--FTSYTLQED------------------------------------------------- 397 (795)
T ss_dssp EE-EEESSSCEEEECTTTCC--EEEECCC---------------------------------------------------
T ss_pred EE-EEECCCCeEEEcCCCCc--EEEEecCCC-------------------------------------------------
Confidence 55 47777788888876541 111110000
Q ss_pred CcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccc
Q 001163 736 FTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGK 815 (1134)
Q Consensus 736 ~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~ 815 (1134)
... . ......|.++...++|..|.+++.++-+.+|+.....+
T Consensus 398 ----------------------------~~~-~----~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~----- 439 (795)
T 4a2l_A 398 ----------------------------ESA-R----GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV----- 439 (795)
T ss_dssp -------------------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE-----
T ss_pred ----------------------------Ccc-c----CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE-----
Confidence 000 0 00235688888888888455566655677776442211
Q ss_pred cccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecC------CCCCeEE
Q 001163 816 ATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMP------PPPAATF 889 (1134)
Q Consensus 816 ~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~------~~~~v~~ 889 (1134)
..+...... .....|.++...++|.+.+... +.|.+||..+++....... ....|.+
T Consensus 440 -------~~~~~~~~~---------l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 502 (795)
T 4a2l_A 440 -------ENFNQRNSQ---------LVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITT 502 (795)
T ss_dssp -------EEECTTTSC---------CSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEE
T ss_pred -------EEeecCCCC---------cCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEE
Confidence 001000000 1346789999999998776665 5688999887655432211 2356899
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEEcccceEEEecc-------CccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccc
Q 001163 890 LAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK-------GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQ 962 (1134)
Q Consensus 890 l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~-------~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~ 962 (1134)
+...+ ++.+.+.. . +-+..|+..+++. .+. .....|.++...++|.+.++.. . -|..||..+++.
T Consensus 503 i~~d~-~g~lWigt-~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~- 574 (795)
T 4a2l_A 503 LFRDS-HKRLWIGG-E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQI- 574 (795)
T ss_dssp EEECT-TCCEEEEE-S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEE-
T ss_pred EEECC-CCCEEEEe-C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcE-
Confidence 99988 67666544 4 5588899887765 222 2345789999988998766554 3 488999876442
Q ss_pred cceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeecc-CCC-ccCE--EEEEEccCCCEEEEE
Q 001163 963 ASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVP-REA-SGPI--THATYSCDSQSIYVA 1038 (1134)
Q Consensus 963 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~h-~~~v--~~~~~s~dg~~l~s~ 1038 (1134)
.......+-. ...+.++...++|++.+++ ++.|..|+..+++.. .+.. .+- ...+ .++...+||.+++ |
T Consensus 575 --~~~~~~~gl~--~~~i~~i~~d~~g~lWi~t-~~Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g 647 (795)
T 4a2l_A 575 --KRYNTTNGLP--NNVVYGILEDSFGRLWLST-NRGISCFNPETEKFR-NFTESDGLQSNQFNTASYCRTSVGQMYF-G 647 (795)
T ss_dssp --EEECGGGTCS--CSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEE-EECGGGTCSCSCEEEEEEEECTTSCEEE-E
T ss_pred --EEeCCCCCCc--hhheEEEEECCCCCEEEEc-CCceEEEcCCCCcEE-EcCCcCCCccccCccCceeECCCCeEEE-e
Confidence 1222222222 1458889999999866655 566888888766532 2221 111 2232 5677788888666 5
Q ss_pred ecCCcEEEeec
Q 001163 1039 FEEGSVGVLTA 1049 (1134)
Q Consensus 1039 s~Dg~i~vwd~ 1049 (1134)
+.+| +..++-
T Consensus 648 ~~~G-l~~~~p 657 (795)
T 4a2l_A 648 GING-ITTFRP 657 (795)
T ss_dssp ETTE-EEEECG
T ss_pred cCCc-eEEEcH
Confidence 5567 444553
No 179
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.64 E-value=2.1e-14 Score=176.74 Aligned_cols=286 Identities=10% Similarity=-0.007 Sum_probs=187.6
Q ss_pred ecCCCeeEEEEcCCCCeEEEEE--eCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEE---------
Q 001163 354 NQGSAVKSMDFHPVQQILLVVG--TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVN--------- 422 (1134)
Q Consensus 354 ~h~~~V~~v~fsp~g~~lla~g--s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--------- 422 (1134)
.|...|..++||+++- +++.+ +.++...||....+..... +..|...|.
T Consensus 21 ~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~~~~~ 80 (662)
T 3azo_A 21 SRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFEYSGF 80 (662)
T ss_dssp HTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGGTCCC
T ss_pred hcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccccCCc
Confidence 3778899999998764 34555 5578899999644432221 344544544
Q ss_pred EEEEc--CCCCE-EEEEeC-CCEEEEEEcc--C-Cceeeeeeeeec-----CCCCEEEEEEecCCCceEEEEEeCC----
Q 001163 423 RVMWS--PDGTL-FGVAYS-KHIVHLYTYH--G-GDELRNHLEIEA-----HVGSVNDLAFSYPNKQLSVVTCGED---- 486 (1134)
Q Consensus 423 ~l~~s--pd~~~-las~s~-dg~v~iwd~~--~-~~~~~~~~~l~~-----h~~~V~~v~~s~~~~~~~l~s~s~d---- 486 (1134)
..+|+ |||++ |+.++. +..|.+|++. + ++ .. .+.. |...+.+++|+|||+ .|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~ 154 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGE 154 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSS
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecccCC
Confidence 55565 99998 777654 5566666665 3 43 33 2444 677899999999999 67777766
Q ss_pred ------CeEEEEECCC------CceeEEec-CCCcCEEEEeccccCCccEEEEecCC--------CcEEEEecC-CC---
Q 001163 487 ------RVIKVWDAVT------GTKQYIFE-GHESPVYSICPHHKENIQFIFSTATD--------GKIKAWLYD-NL--- 541 (1134)
Q Consensus 487 ------~~i~iwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d--------g~i~vwd~~-~~--- 541 (1134)
..|++||+.+ ++. ..+. .+...+..++|+ +||++|+.++.+ ..|++||+. ++
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~S--pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~ 231 (662)
T 3azo_A 155 GPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLS--PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA 231 (662)
T ss_dssp STTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEEC--TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE
T ss_pred CCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceEC--CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc
Confidence 5899999988 554 4455 555667667774 566888877754 379999998 34
Q ss_pred CceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCC-------ceEEEEEcCCCCEEE
Q 001163 542 GSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKR-------SVGVVQFDTTKNRFL 614 (1134)
Q Consensus 542 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~ 614 (1134)
........+...+..++|+|||+.++++.. ++...|++||..+++.......+... .+..++|++++..++
T Consensus 232 ~~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~ 309 (662)
T 3azo_A 232 DTRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAV 309 (662)
T ss_dssp EEEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEE
T ss_pred ccEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEE
Confidence 222233333567889999999995555543 34457899998777765544433221 145688999999999
Q ss_pred EEeCCCeEEEE--EcCCCceeEEEecCCCCCCcceE-EEcCCCcEEEEEECCCcEEEE--EccCC
Q 001163 615 AAGDEFMIKFW--DMDNVNLLASIDADGGLQASPCI-RFNKEGILLAVSTNDNGIKIL--ANADG 674 (1134)
Q Consensus 615 ~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v-~~sp~~~~l~~~~~dg~i~iw--~~~~~ 674 (1134)
+++. +.+++| |..+++ +..+..+ ...+..+ +++.+.-.+++++.+....+| ++.++
T Consensus 310 ~~~~-~~~~l~~~d~~~~~-~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 310 VHGK-GAAVLGILDPESGE-LVDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EEBS-SSCEEEEEETTTTE-EEECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEEc-CccEEEEEECCCCc-EEEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 9988 999999 555555 5555543 3455555 444443344455555544444 55555
No 180
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.63 E-value=9.9e-14 Score=153.76 Aligned_cols=245 Identities=12% Similarity=0.106 Sum_probs=180.6
Q ss_pred CCeeEEEEcCCCCeEEEEEeCC------------------------CcEEEEecCCccceeeeceeeeeccccCcccccc
Q 001163 357 SAVKSMDFHPVQQILLVVGTNM------------------------GDVMLWEVGSRERIAVKSFKVWELGACSMPLQAS 412 (1134)
Q Consensus 357 ~~V~~v~fsp~g~~lla~gs~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (1134)
..|.+|+++|+|+ ++++.+.+ +.|.+||..+++.+..
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------ 84 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------------------ 84 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------------------
Confidence 5688999999998 55676666 4799999988876532
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCc-eeeeeeee---------ecCCCCEEEEEEec-CCCceEEE
Q 001163 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD-ELRNHLEI---------EAHVGSVNDLAFSY-PNKQLSVV 481 (1134)
Q Consensus 413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~-~~~~~~~l---------~~h~~~V~~v~~s~-~~~~~~l~ 481 (1134)
.-.++-..+..++++|+|+++++...++.|++||..... .+. .+ .++-.....++|+| ++. +++
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 012455689999999999999999999999999986542 222 23 34555789999999 676 677
Q ss_pred EEe-CCCeEEEEECCCCceeEEecC----------CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec--
Q 001163 482 TCG-EDRVIKVWDAVTGTKQYIFEG----------HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-- 548 (1134)
Q Consensus 482 s~s-~d~~i~iwd~~~~~~~~~~~~----------h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-- 548 (1134)
+.+ .++.|++|| .+|+.+..+.. +-.....++++++. +.++++...++.|++|+.++++....+.
T Consensus 160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~-g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL-DQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTT-TEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCC-CEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 776 689999999 67888877742 22347889886532 4788888899999999998666665553
Q ss_pred CCCCCeeEEEECcCCCEEEEEecC---CCCCeEEEEEeCCCCeeEEEec---CCCCCceEEEEEcCCCCEEEEEeCCCeE
Q 001163 549 APGHSSTMMAYSADGARLFSCGTN---KEGESYLVEWNESEGAVKRTYH---GLGKRSVGVVQFDTTKNRFLAAGDEFMI 622 (1134)
Q Consensus 549 ~~~~~v~~~~~s~~~~~l~~~~~~---~~~~~~i~~wd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i 622 (1134)
.....+..++++| +..+...+.. ......|++||..+++.+..+. .+.. .+..++++|+|..+++...++.|
T Consensus 238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I 315 (329)
T 3fvz_A 238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTV 315 (329)
T ss_dssp TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCE
T ss_pred ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEE
Confidence 3345788899999 4333333210 1223469999999999998874 3333 68899999999777777789999
Q ss_pred EEEEcCC
Q 001163 623 KFWDMDN 629 (1134)
Q Consensus 623 ~iwd~~~ 629 (1134)
++|++..
T Consensus 316 ~~~~~~~ 322 (329)
T 3fvz_A 316 WKFTLTE 322 (329)
T ss_dssp EEEEEEE
T ss_pred EEEeCCc
Confidence 9999753
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.63 E-value=3.6e-13 Score=146.18 Aligned_cols=245 Identities=10% Similarity=0.083 Sum_probs=178.4
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeee---ecCCCCEEEEEEe-cCCCceEEEEEeC-CCeE
Q 001163 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEI---EAHVGSVNDLAFS-YPNKQLSVVTCGE-DRVI 489 (1134)
Q Consensus 415 ~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l---~~h~~~V~~v~~s-~~~~~~~l~s~s~-d~~i 489 (1134)
.++-..+.+++++++|+++++...++.|.+||.. ++.+...... .+|...+..++++ +++. ++++... ++.|
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i 102 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQI 102 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEE
Confidence 3566789999999999999998899999999987 4434322110 1345678999995 5665 4555533 8899
Q ss_pred EEEECCCCceeEEecC-CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec--CCCCCeeEEEECcCCCEE
Q 001163 490 KVWDAVTGTKQYIFEG-HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD--APGHSSTMMAYSADGARL 566 (1134)
Q Consensus 490 ~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l 566 (1134)
.+|| .+++.+..+.. +...+.++++.+ +|.++++...++.|.+||.. ......+. .....+..++++++|+.+
T Consensus 103 ~~~d-~~g~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 103 QIYN-QYGQFVRKFGATILQHPRGVTVDN--KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIF 178 (286)
T ss_dssp EEEC-TTSCEEEEECTTTCSCEEEEEECT--TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEE
T ss_pred EEEC-CCCcEEEEecCccCCCceEEEEeC--CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEE
Confidence 9999 67887777643 445688888854 55788888888999999964 33333332 233468899999999876
Q ss_pred EEEecCCCCCeEEEEEeCCCCeeEEEecCCC-CCceEEEEEcCCCCEEEEEeCCC-eEEEEEcCCCceeEEEecCCCCCC
Q 001163 567 FSCGTNKEGESYLVEWNESEGAVKRTYHGLG-KRSVGVVQFDTTKNRFLAAGDEF-MIKFWDMDNVNLLASIDADGGLQA 644 (1134)
Q Consensus 567 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~ 644 (1134)
++... +..|.+||. +++.+..+.... ...+..++++++++.+++...++ .|.+||. +++.+..+..+.....
T Consensus 179 v~~~~----~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 252 (286)
T 1q7f_A 179 ISDNR----AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQ 252 (286)
T ss_dssp EEEGG----GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSC
T ss_pred EEECC----CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCc
Confidence 66543 346999997 456666665432 13678899999998888887776 9999995 5677777765543345
Q ss_pred cceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163 645 SPCIRFNKEGILLAVSTNDNGIKILANAD 673 (1134)
Q Consensus 645 v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 673 (1134)
+..++++|+|+++++ +.++.|++|+...
T Consensus 253 ~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 253 CFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred ceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 678999999987776 6799999998754
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.61 E-value=2.9e-13 Score=167.23 Aligned_cols=250 Identities=10% Similarity=0.009 Sum_probs=176.1
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCCC-----EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCe-
Q 001163 415 SDYTASVNRVMWSPDGTLFGVAYSKH-----IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV- 488 (1134)
Q Consensus 415 ~~h~~~V~~l~~spd~~~las~s~dg-----~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~- 488 (1134)
.+|...+..++|||||++||.++.++ .|++||+.+++.... .+.. ..+..++|+|||+ .|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~~--~~~~~~~wspDg~--~l~~~~~~~~~ 194 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLER--VKFSCMAWTHDGK--GMFYNAYPQQD 194 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEEE--ECSCCEEECTTSS--EEEEEECCCCS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cccC--cccceEEEEeCCC--EEEEEEECCcc
Confidence 35666799999999999999876543 899999999986542 1222 2367899999999 6777776655
Q ss_pred ---------------EEEEECCCCc----eeEEecCCCcCEEEEeccccCCccEEEEecC-----CCcEEEEecCC----
Q 001163 489 ---------------IKVWDAVTGT----KQYIFEGHESPVYSICPHHKENIQFIFSTAT-----DGKIKAWLYDN---- 540 (1134)
Q Consensus 489 ---------------i~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-----dg~i~vwd~~~---- 540 (1134)
|++|++.++. .+.....|...+..+.|+ +||++|+..+. +..|.+||+..
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~S--pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELS--DDGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC--TTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEc--CCCCEEEEEEEccCCCccEEEEEECcccccc
Confidence 9999998876 233333355667778775 45577776654 56899999976
Q ss_pred --CC-ceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCee--EEEecCCCC-CceEEEEEcCCCCEEE
Q 001163 541 --LG-SRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV--KRTYHGLGK-RSVGVVQFDTTKNRFL 614 (1134)
Q Consensus 541 --~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~-~~v~~~~~~~~~~~l~ 614 (1134)
+. ....+..+...+.. .|+++|+.|+..+........|.+||+.++.. ...+..+.. ..+..++|++++..++
T Consensus 273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 32 33444444444443 58899999888775444466799999988742 233434433 3677888987777777
Q ss_pred EEeCCCe--EEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEE-E---CCCcEEEEEccCCc
Q 001163 615 AAGDEFM--IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS-T---NDNGIKILANADGI 675 (1134)
Q Consensus 615 ~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~---~dg~i~iw~~~~~~ 675 (1134)
+...++. |++|++.+++.+..+..+ ...+..++++|++..++.. + ..+.++.||+.++.
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8878874 667787778877777654 5567888999988766543 2 24789999998774
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.59 E-value=3e-13 Score=150.53 Aligned_cols=273 Identities=13% Similarity=0.039 Sum_probs=183.8
Q ss_pred CCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001163 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 436 (1134)
Q Consensus 357 ~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~ 436 (1134)
..|.+++|++++..+ +..+.++.++.|. ++.... +.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSA-VPIISESELQTIT---AEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGGCS-SCCCCGGGSCEEE---CEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCccce-eEEeecccCcccc---cceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence 346778888887743 4556778888882 222211 34466678999999999988888
Q ss_pred eCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC----CeEEEEECCCCceeEEec--CCCcCE
Q 001163 437 YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED----RVIKVWDAVTGTKQYIFE--GHESPV 510 (1134)
Q Consensus 437 s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d----~~i~iwd~~~~~~~~~~~--~h~~~v 510 (1134)
..++.|.+||..+++... ....+...+.+++|+++|+ ++++...+ +.|.+||..+++....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 899999999998876433 1224667899999999998 66766666 689999988877653333 244568
Q ss_pred EEEeccccCCccEEEEecC------CCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeC
Q 001163 511 YSICPHHKENIQFIFSTAT------DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 584 (1134)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 584 (1134)
.++++++ +|.++++... .+.|..||....... .+.........++|+|+++.++.+.. ....|.+||.
T Consensus 138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 8888854 4567766553 244555554433322 22222235778999999997766542 1336999998
Q ss_pred CC-CeeEEEe------cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCC----CCCCcceEEEcCC
Q 001163 585 SE-GAVKRTY------HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG----GLQASPCIRFNKE 653 (1134)
Q Consensus 585 ~~-~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~v~~sp~ 653 (1134)
.+ +.....+ .......+..++++++++.+++...++.|.+||. +++.+..+.... +...+.+++|+|+
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC
Confidence 63 3322111 1111125778999999998888778899999998 566676665432 1125789999999
Q ss_pred CcEEEEEECCC
Q 001163 654 GILLAVSTNDN 664 (1134)
Q Consensus 654 ~~~l~~~~~dg 664 (1134)
+..|++++.++
T Consensus 291 g~~L~v~~~~g 301 (333)
T 2dg1_A 291 TNQLIICSNDI 301 (333)
T ss_dssp SCEEEEEEECG
T ss_pred CCEEEEEeCcc
Confidence 87776666553
No 184
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.58 E-value=1.6e-12 Score=145.70 Aligned_cols=255 Identities=10% Similarity=0.117 Sum_probs=170.6
Q ss_pred CCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCC-CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcC
Q 001163 530 DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK-EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT 608 (1134)
Q Consensus 530 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 608 (1134)
++.|.+||+..++... + ..+..++|+|||++|+..+.+. ++...|++||+.+++......... +..++|+|
T Consensus 42 ~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~~wsp 113 (347)
T 2gop_A 42 ENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN---IRSLEWNE 113 (347)
T ss_dssp EEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE---EEEEEECT
T ss_pred cceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC---ccceeECC
Confidence 5678899988765433 2 4678899999999999876542 245569999999887666554332 78899999
Q ss_pred CCCEEEEEeC---------------------------CCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEE
Q 001163 609 TKNRFLAAGD---------------------------EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST 661 (1134)
Q Consensus 609 ~~~~l~~~~~---------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~ 661 (1134)
+++.|+.++. ...|++||+.+++.+..+.. . .+..++|+|+| +++++.
T Consensus 114 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~---~-~~~~~~~spdg-~~~~~~ 188 (347)
T 2gop_A 114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK---P-RFSSGIWHRDK-IVVNVP 188 (347)
T ss_dssp TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE---E-TTCEEEEETTE-EEEEEE
T ss_pred CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC---C-CcccccCCCCe-EEEEEe
Confidence 9999988863 25799999999887455543 2 67899999999 777776
Q ss_pred CCC-------cEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCc
Q 001163 662 NDN-------GIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSR 734 (1134)
Q Consensus 662 ~dg-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 734 (1134)
.++ ...||.+.++ . ...+..
T Consensus 189 ~~~~~~~~~~~~~l~~~d~~-~-~~~l~~--------------------------------------------------- 215 (347)
T 2gop_A 189 HREIIPQYFKFWDIYIWEDG-K-EEKMFE--------------------------------------------------- 215 (347)
T ss_dssp CCCSSCCSSCCEEEEEEETT-E-EEEEEE---------------------------------------------------
T ss_pred cccccccccccccEEEeCCC-c-eEEecc---------------------------------------------------
Confidence 542 3344433321 1 111100
Q ss_pred cCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCC--------eEEeeecC
Q 001163 735 NFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNA--------VHKLWKWP 806 (1134)
Q Consensus 735 ~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg--------~i~vw~~~ 806 (1134)
+ ..+..+ +|||+.|+.++.++ .+.+|
T Consensus 216 ----------------------------------------~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~--- 249 (347)
T 2gop_A 216 ----------------------------------------K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIY--- 249 (347)
T ss_dssp ----------------------------------------E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEE---
T ss_pred ----------------------------------------C-cceeeE--CCCCCEEEEEEccccCCccccceEEEE---
Confidence 1 223333 89999888776542 34444
Q ss_pred CCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeE-EEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCC
Q 001163 807 RNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPC-FALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPP 884 (1134)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~-v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~ 884 (1134)
| ++..... ..+ +...+.. ++|+ |+ ++++++ ++.++|| +.+++....+. +.
T Consensus 250 -------------------d--~~~~~~l-~~~--~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~-~~ 301 (347)
T 2gop_A 250 -------------------D--GKEVMGI-LDE--VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAK-GR 301 (347)
T ss_dssp -------------------C--SSCEEES-STT--CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEEC-SS
T ss_pred -------------------C--CCceEec-ccc--CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEec-CC
Confidence 3 2222211 222 5667776 8999 88 777777 8899999 87666644444 57
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCcE-EEEEcccceEEEeccCccCc
Q 001163 885 PAATFLAFHPQDNNIIAIGMEDSSI-QIYNVRVDEVKTKLKGHQKR 929 (1134)
Q Consensus 885 ~~v~~l~~sp~~~~~la~g~~dg~i-~iwd~~~~~~~~~l~~h~~~ 929 (1134)
..|.+++|+| .++++++.++.. .||.+. ++ ...+..|...
T Consensus 302 ~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~~ 342 (347)
T 2gop_A 302 HWIMGFDVDE---IVVYLKETATRLRELFTWD-GE-EKQLTDYNDP 342 (347)
T ss_dssp SEEEEEEESS---SEEEEEECSSSCCEEEEES-SS-EEECCCTTST
T ss_pred CeEEeeeeeC---cEEEEEcCCCChHHheEeC-Cc-EEEeccccHh
Confidence 7899999997 577777777765 788876 55 4556666554
No 185
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=1.3e-08 Score=126.91 Aligned_cols=594 Identities=12% Similarity=0.074 Sum_probs=335.1
Q ss_pred CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001163 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (1134)
Q Consensus 356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las 435 (1134)
...|+++.-.++|.. -.|+.+| +..||-.+ ++.+... ...... ..-....|.++...++|..|-.
T Consensus 18 ~n~V~~I~qD~~G~l--WigT~~G-L~ryDG~~--------f~~~~~~-~~~~~~---~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGFL--WFATEEG-LNKFDGTR--------FITYYKE-EQSSSV---QSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSCE--EEEESSC-EEEECSSS--------EEEECCC-SSCSSS---CCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCCE--EEccCCc-CccccCCc--------eEEEEcC-CCCCcc---ccccccccceEEEcCCCCEEEE
Confidence 357889999999973 4566666 66777432 2222210 000000 0012357999999998884555
Q ss_pred EeCCCEEEEEEccCCceeeeee-e-eec---CCCCEEEEEEec--CCCceEEEEEeCCCeEEEEECCCCceeEEec----
Q 001163 436 AYSKHIVHLYTYHGGDELRNHL-E-IEA---HVGSVNDLAFSY--PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE---- 504 (1134)
Q Consensus 436 ~s~dg~v~iwd~~~~~~~~~~~-~-l~~---h~~~V~~v~~s~--~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~---- 504 (1134)
|+.++-+..||..+++-.. .. . ... ....|.++.... ++. |..++.++.|..+|..+++......
T Consensus 83 gt~~~Gl~~~d~~~~~f~~-~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~ 158 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSV-YQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVP 158 (781)
T ss_dssp EESSSCEEEEETTTTEEEE-ECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCT
T ss_pred EeCCCCcceECCCCCeEEe-eccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCccc
Confidence 6677459999998765322 10 0 000 123688888776 664 4455545568899987765433211
Q ss_pred -CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee-------cCCCCCeeEEEECcCCCEEEEEecCCCCC
Q 001163 505 -GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-------DAPGHSSTMMAYSADGARLFSCGTNKEGE 576 (1134)
Q Consensus 505 -~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 576 (1134)
-....|.++... .++ .|..++.++-|..||.......... ......|.++...++|...+... .
T Consensus 159 ~l~~~~i~~i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-~---- 230 (781)
T 3v9f_A 159 ALPSEQTWTATEA--EDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-K---- 230 (781)
T ss_dssp TCSCCCEEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET-T----
T ss_pred CCCccceEEEEEC--CCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC-C----
Confidence 123457777653 333 4555666656888887654322211 11234688898888888766542 1
Q ss_pred eEEEEEeCCCCeeEEEecC------CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEe-------cC----
Q 001163 577 SYLVEWNESEGAVKRTYHG------LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID-------AD---- 639 (1134)
Q Consensus 577 ~~i~~wd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~---- 639 (1134)
-+.+||..+++....... .....|.++...++|. |..|+..+-|.++|..++....... ..
T Consensus 231 -Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 308 (781)
T 3v9f_A 231 -GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNY 308 (781)
T ss_dssp -EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTT
T ss_pred -cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCC
Confidence 289999887755432211 1233688888877764 5566665678899987765432211 10
Q ss_pred -CCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCC
Q 001163 640 -GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGE 718 (1134)
Q Consensus 640 -~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 718 (1134)
-....|.++...++|.+ -.|+.++.|..++..... +..+......
T Consensus 309 ~l~~~~v~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~--~~~~~~~~~~------------------------------- 354 (781)
T 3v9f_A 309 SLSNASARYIFQDSFNNI-WIGTWGGGINFISNAPPT--FHTWSYSPTQ------------------------------- 354 (781)
T ss_dssp SBSSSCEEEEEECSSCCE-EEEEBSSCEEEECSSCCS--CEEEC----C-------------------------------
T ss_pred CCCCCeEEEEEEeCCCCE-EEEecCCeEEEeCCCCCc--ceeeccCccc-------------------------------
Confidence 11345778888887764 456767777777765431 1111100000
Q ss_pred CCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCC
Q 001163 719 RTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNA 798 (1134)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg 798 (1134)
. .........|.++...++|... .++.++
T Consensus 355 --------------------------------------------~------~~~~l~~~~v~~i~~d~~g~lW-igt~~~ 383 (781)
T 3v9f_A 355 --------------------------------------------M------NESSLSNKVVSSVCDDGQGKLW-IGTDGG 383 (781)
T ss_dssp --------------------------------------------C------CSSCCSSSCEEEEEECTTSCEE-EEEBSS
T ss_pred --------------------------------------------c------ccCCCCCcceEEEEEcCCCCEE-EEeCCC
Confidence 0 0000123568888888888744 455444
Q ss_pred eEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEE
Q 001163 799 VHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMT 878 (1134)
Q Consensus 799 ~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~ 878 (1134)
-+..|+... +...............|.+++..++|.+.+...++.|..+|..+++...
T Consensus 384 Gl~~~~~~~----------------------~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~ 441 (781)
T 3v9f_A 384 GINVFENGK----------------------RVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQI 441 (781)
T ss_dssp CEEEEETTE----------------------EEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEE
T ss_pred cEEEEECCC----------------------CeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEE
Confidence 465665331 1110000000013567899999988887775546779999987765433
Q ss_pred Eec--CCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCc-----cCceEEEEEeeCCCEEEEEeCCCcE
Q 001163 879 TFM--PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGH-----QKRITGLAFSNTLNVLVSSGADSQL 951 (1134)
Q Consensus 879 ~~~--~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h-----~~~V~~l~~s~d~~~l~s~s~Dg~i 951 (1134)
... .....|.++...+ ++.+.+ |+. +-|.+|+..+++........ ...|.++...++|.+.+....+| +
T Consensus 442 ~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l 517 (781)
T 3v9f_A 442 IELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-V 517 (781)
T ss_dssp CCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-E
T ss_pred eccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-E
Confidence 221 1346799999887 665544 555 45888998876543322111 46789999988887766544345 8
Q ss_pred EEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeecc-CC-CccCEEEEEEc
Q 001163 952 CVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVP-RE-ASGPITHATYS 1029 (1134)
Q Consensus 952 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~-h~~~v~~~~~s 1029 (1134)
..||..+++.. ......+. ....|.++...++|.+.+++.+|-+..||..+++.. .+.. .+ ....|.++...
T Consensus 518 ~~~~~~~~~~~---~~~~~~~l--~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d 591 (781)
T 3v9f_A 518 GIYTPDMQLVR---KFNQYEGF--CSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISED 591 (781)
T ss_dssp EEECTTCCEEE---EECTTTTC--SCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEEC
T ss_pred EEEeCCCCeEE---EccCCCCC--CCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEE-EccccCCCCCceEEEEEEC
Confidence 88887764311 11111111 125688999999998776666554488988766532 2221 11 13467889998
Q ss_pred cCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCC
Q 001163 1030 CDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEA 1104 (1134)
Q Consensus 1030 ~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~ 1104 (1134)
++|.+.++ +.+| |..|+..+++.. .+....-++. .....-++...+ ++ .|..|+.+| +..+++...
T Consensus 592 ~~g~lW~~-t~~G-l~~~~~~~~~~~-~~~~~dGl~~---~~f~~~~~~~~~-~G-~l~~g~~~G-l~~f~p~~~ 657 (781)
T 3v9f_A 592 KNGNIWAS-TNTG-ISCYITSKKCFY-TYDHSNNIPQ---GSFISGCVTKDH-NG-LIYFGSING-LCFFNPDIA 657 (781)
T ss_dssp SSSCEEEE-CSSC-EEEEETTTTEEE-EECGGGTCCS---SCEEEEEEEECT-TS-CEEEEETTE-EEEECSCCG
T ss_pred CCCCEEEE-cCCc-eEEEECCCCceE-EecccCCccc---cccccCceEECC-CC-EEEEECCCc-eEEEChhhc
Confidence 88987665 4455 777887766543 2221111111 112222334444 44 456677888 566776543
No 186
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=1e-12 Score=145.30 Aligned_cols=279 Identities=11% Similarity=0.006 Sum_probs=190.7
Q ss_pred eCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeee
Q 001163 376 TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRN 455 (1134)
Q Consensus 376 s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~ 455 (1134)
+.+++|.+||..+++..... +... . -.........+++. ++++.++...++.|.+||..+++.+..
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i----~~~~------n---~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~ 79 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEV----FYRA------N---GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR 79 (328)
T ss_dssp SCCBEEEEEETTTTEEECSH----HHHH------H---SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE
T ss_pred CCCceEEEEECCCCEEhhhh----Hhhh------c---CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE
Confidence 34889999999998765321 0000 0 01123456778874 455666666789999999999987663
Q ss_pred eeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCC-----cCEEEEeccccCCccEEEEec-C
Q 001163 456 HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE-----SPVYSICPHHKENIQFIFSTA-T 529 (1134)
Q Consensus 456 ~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~s-~ 529 (1134)
+. .......++++++++ ++++...++.|.+||..+++....+.... .....+++ . ++.++++.. .
T Consensus 80 ---i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~ 150 (328)
T 3dsm_A 80 ---IT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSY 150 (328)
T ss_dssp ---EE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTT
T ss_pred ---cC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCC
Confidence 33 345688999999985 56666588999999999999887765333 13445665 2 334444443 4
Q ss_pred CCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCC------CeEEEEEeCCCCeeEEEecCCCCCceEE
Q 001163 530 DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG------ESYLVEWNESEGAVKRTYHGLGKRSVGV 603 (1134)
Q Consensus 530 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~------~~~i~~wd~~~~~~~~~~~~~~~~~v~~ 603 (1134)
++.|.+||..+.+....+.. ......++++|+|++++++..+... ...|.++|..+++....+..........
T Consensus 151 ~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~ 229 (328)
T 3dsm_A 151 QNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSE 229 (328)
T ss_dssp CCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEE
T ss_pred CCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCcee
Confidence 89999999988766555544 2345678999999877665432100 2579999999999887776443336788
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC-CCcEEEEE----ECCCcEEEEEccCCceeE
Q 001163 604 VQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EGILLAVS----TNDNGIKILANADGIRLL 678 (1134)
Q Consensus 604 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~----~~dg~i~iw~~~~~~~~~ 678 (1134)
++++|+++.++++.. .|.+||..+++................++++| ++.++++. ..++.|.+|+.. + +.+
T Consensus 230 la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g-~~~ 305 (328)
T 3dsm_A 230 VQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G-KLI 305 (328)
T ss_dssp EEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C-CEE
T ss_pred EEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C-CEE
Confidence 999999999988765 89999999887642111111124567899999 55666665 568999999987 6 455
Q ss_pred EEec
Q 001163 679 RTVE 682 (1134)
Q Consensus 679 ~~~~ 682 (1134)
..+.
T Consensus 306 ~~i~ 309 (328)
T 3dsm_A 306 DEFY 309 (328)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 187
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.55 E-value=6e-13 Score=164.47 Aligned_cols=247 Identities=9% Similarity=-0.023 Sum_probs=171.3
Q ss_pred CCeeEEEEcCCCCeEEEEEeCCC----cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCE
Q 001163 357 SAVKSMDFHPVQQILLVVGTNMG----DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (1134)
Q Consensus 357 ~~V~~v~fsp~g~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 432 (1134)
..+..++|||||++|+.+.+.+| .|++||+.+++.+.. . + ....+..++|||||+.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~-----------------~--~~~~~~~~~wspDg~~ 184 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------L--ERVKFSCMAWTHDGKG 184 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------E--EEECSCCEEECTTSSE
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-c-----------------c--cCcccceEEEEeCCCE
Confidence 35789999999997765555444 899999999986542 0 1 1123678999999999
Q ss_pred EEEEeCCCE----------------EEEEEccCCceee-eeeeeecCCCCEEEEEEecCCCceEEEEEeC-----CCeEE
Q 001163 433 FGVAYSKHI----------------VHLYTYHGGDELR-NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-----DRVIK 490 (1134)
Q Consensus 433 las~s~dg~----------------v~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-----d~~i~ 490 (1134)
|+.++.++. |++|++.+++... .......|...+..+.|+|||+. |+.++. +..|.
T Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~l~ 262 (710)
T 2xdw_A 185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNRLW 262 (710)
T ss_dssp EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCEEE
T ss_pred EEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccEEE
Confidence 999988765 9999998876321 11122235666889999999994 554443 67899
Q ss_pred EEECCC------Cc-eeEEecCCCcCEEEEeccccCCccEEEEecC-C---CcEEEEecCCCCc--eeeecCCCC--Cee
Q 001163 491 VWDAVT------GT-KQYIFEGHESPVYSICPHHKENIQFIFSTAT-D---GKIKAWLYDNLGS--RVDYDAPGH--SST 555 (1134)
Q Consensus 491 iwd~~~------~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-d---g~i~vwd~~~~~~--~~~~~~~~~--~v~ 555 (1134)
+||+.+ +. ....+..+...+... |++ +|..|+..+. + +.|.+||+.+... ...+..+.. .+.
T Consensus 263 ~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~ 339 (710)
T 2xdw_A 263 YCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE 339 (710)
T ss_dssp EEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEE
T ss_pred EEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEE
Confidence 999987 53 456666666666543 444 3355554443 2 3699999887642 233333333 577
Q ss_pred EEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe----CCCeEEEEEcCCCc
Q 001163 556 MMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG----DEFMIKFWDMDNVN 631 (1134)
Q Consensus 556 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~ 631 (1134)
.++|++++..+++... ++...|++||+.+++.+..+..+. ..+..+.++|+++.++... ..+.|+.||+.+++
T Consensus 340 ~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~-~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 340 WVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEV-GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCS-SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCC-ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8889877766666654 345678999998888777777763 3788889999987666442 45789999999887
No 188
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.55 E-value=1.1e-12 Score=145.81 Aligned_cols=241 Identities=10% Similarity=0.038 Sum_probs=172.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc
Q 001163 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT 498 (1134)
Q Consensus 419 ~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~ 498 (1134)
..|.+++|++++..++..+.++.++.|. ++... .+..+...+.+++|+++|+ +++++..++.|.+||..+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~g~--l~~~~~~~~~i~~~d~~~~~ 77 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPWL---EISKKGLQLEGLNFDRQGQ--LFLLDVFEGNIFKINPETKE 77 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEE---EEESSCCCEEEEEECTTSC--EEEEETTTCEEEEECTTTCC
T ss_pred cccceeeecCCccceeEEeecccCcccc---cceeE---EEeccCccccCcEECCCCC--EEEEECCCCEEEEEeCCCCc
Confidence 4577889999988888888888999992 33232 4666777889999999998 67788889999999998887
Q ss_pred eeEEecCCCcCEEEEeccccCCccEEEEecCC----CcEEEEecCCCCceeeec--CCCCCeeEEEECcCCCEEEEEecC
Q 001163 499 KQYIFEGHESPVYSICPHHKENIQFIFSTATD----GKIKAWLYDNLGSRVDYD--APGHSSTMMAYSADGARLFSCGTN 572 (1134)
Q Consensus 499 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~ 572 (1134)
.......+...+.++++++ +|.++++...+ +.|.+||.+.......+. .....+..++++|+|+.+++...+
T Consensus 78 ~~~~~~~~~~~~~~i~~~~--dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~ 155 (333)
T 2dg1_A 78 IKRPFVSHKANPAAIKIHK--DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRG 155 (333)
T ss_dssp EEEEEECSSSSEEEEEECT--TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCC
T ss_pred EEEEeeCCCCCcceEEECC--CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccc
Confidence 7665545677899998854 45777777666 689999988765542322 234578899999999887765421
Q ss_pred --CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEE-eCCCeEEEEEcCC-CceeEEE------ecCCCC
Q 001163 573 --KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAA-GDEFMIKFWDMDN-VNLLASI------DADGGL 642 (1134)
Q Consensus 573 --~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~-~~~~~~~------~~~~~~ 642 (1134)
.+....|..+|..+++........ ..+..++|+|+++.++.+ +.++.|++||..+ +..+..+ ...+ .
T Consensus 156 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~ 232 (333)
T 2dg1_A 156 YSTNPLGGVYYVSPDFRTVTPIIQNI--SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-H 232 (333)
T ss_dssp BTTBCCEEEEEECTTSCCEEEEEEEE--SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-S
T ss_pred cccCCCceEEEEeCCCCEEEEeecCC--CcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-C
Confidence 112356888887766554332221 146789999999866555 4678999999964 4333221 1111 1
Q ss_pred CCcceEEEcCCCcEEEEEECCCcEEEEEcc
Q 001163 643 QASPCIRFNKEGILLAVSTNDNGIKILANA 672 (1134)
Q Consensus 643 ~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 672 (1134)
..+..++++++|+++++...++.|.+|+..
T Consensus 233 ~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 233 EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 356789999999988888888999999873
No 189
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.55 E-value=4.8e-13 Score=164.75 Aligned_cols=249 Identities=11% Similarity=-0.053 Sum_probs=167.1
Q ss_pred ccCCCCEEEEEEcCCCCEEEE-----EeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCe-
Q 001163 415 SDYTASVNRVMWSPDGTLFGV-----AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV- 488 (1134)
Q Consensus 415 ~~h~~~V~~l~~spd~~~las-----~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~- 488 (1134)
.+|...+.+++|||||++||. |+.+..|++||+.+++.+.. ..+... ....++|+|||+ .|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~~--~~~~~~wspDg~--~l~~~~~d~~~ 191 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-DVIEGG--KYATPKWTPDSK--GFYYEWLPTDP 191 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-CCBSCC--TTCCCEECTTSS--EEEEEECCCCT
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-cccCcc--cccceEEecCCC--EEEEEEecCCC
Confidence 467778999999999999994 44457899999999875411 012211 126799999999 6888887766
Q ss_pred ------------EEEEECCCCc----eeEEecCCCcCEEEEeccccCCccEEEEecCCC----cEEEEecCCCCceeeec
Q 001163 489 ------------IKVWDAVTGT----KQYIFEGHESPVYSICPHHKENIQFIFSTATDG----KIKAWLYDNLGSRVDYD 548 (1134)
Q Consensus 489 ------------i~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg----~i~vwd~~~~~~~~~~~ 548 (1134)
|++|++.++. ++.....|...+.++.|++ ||++|+..+.++ .|.+|+..... ...+.
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~ 268 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR--DGKYLFVYILRGWSENDVYWKRPGEKD-FRLLV 268 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT--TSCCEEEEEEETTTEEEEEEECTTCSS-CEEEE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC--CCCEEEEEEeCCCCceEEEEEcCCCCc-eEEee
Confidence 9999998876 3444445666788888754 557777766555 56666554333 33333
Q ss_pred CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCee---EEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 001163 549 APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV---KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFW 625 (1134)
Q Consensus 549 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 625 (1134)
.+...+....+ ++|. ++..+.....+..|.+||+.++.. ...+..+....+..++++ ++..+++...|+..++|
T Consensus 269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 33444555555 6777 655544333467899999988753 333433324367778887 66777888889988888
Q ss_pred EcC-CCceeEEEecCCCCCCcceEEEcCCCcEEEEEE----CCCcEEEEEccCCc
Q 001163 626 DMD-NVNLLASIDADGGLQASPCIRFNKEGILLAVST----NDNGIKILANADGI 675 (1134)
Q Consensus 626 d~~-~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~----~dg~i~iw~~~~~~ 675 (1134)
.+. +++....+..+. ...+..++++|++..++... ..++|++||+.++.
T Consensus 346 ~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 346 VATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 654 455555554321 34567788999987766433 24789999998874
No 190
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=7e-09 Score=129.41 Aligned_cols=540 Identities=10% Similarity=0.041 Sum_probs=310.4
Q ss_pred CCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC--CCCEEE
Q 001163 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTLFG 434 (1134)
Q Consensus 357 ~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~~la 434 (1134)
..|.++...++|..| -+|+.++.+..||..+++...- .... ... ..-....|.++.... +|.+.+
T Consensus 66 n~I~~i~~d~~g~~l-Wigt~~~Gl~~~d~~~~~f~~~------~~~~----~~~--~~l~~~~i~~i~~d~~~~g~lwi 132 (781)
T 3v9f_A 66 NELNEVYTDPVQPVI-WIATQRAGLNAYNYETQSFSVY------QYNP----EDP--QSLITNDVTHITSSVQAGKGLWV 132 (781)
T ss_dssp SCEEEEEECSSSSEE-EEEESSSCEEEEETTTTEEEEE------CCCT----TCS--SSCSCSCEEEEEECSSTTSEEEE
T ss_pred cccceEEEcCCCCEE-EEEeCCCCcceECCCCCeEEee------cccc----CCC--CCcccCcceEEEecCccCCCEEE
Confidence 358999999988722 3466665699999887653221 0000 000 001124799998887 666544
Q ss_pred EEeCCCEEEEEEccCCceeeeeee--ee-cCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEec-------
Q 001163 435 VAYSKHIVHLYTYHGGDELRNHLE--IE-AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE------- 504 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~~~~~~--l~-~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~------- 504 (1134)
++.++-|..+|..+++... ... .. -....|.++...++|. |..+..++-+..+|..+++...-..
T Consensus 133 -~t~~~gl~~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 207 (781)
T 3v9f_A 133 -CTYYRGIEYLDIATGKFTH-YNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNS 207 (781)
T ss_dssp -EESSSCEEEEETTTTEEEE-ESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC-------
T ss_pred -EECCCCeeEEECCCCeEEe-eccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCCCccc
Confidence 5534448889987765321 110 00 1234588888887776 4556666578899987765432111
Q ss_pred CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec-------CCCCCeeEEEECcCCCEEEEEecCCCCCe
Q 001163 505 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-------APGHSSTMMAYSADGARLFSCGTNKEGES 577 (1134)
Q Consensus 505 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 577 (1134)
-....|.++.. +.++.+. .++.+ -+.+||..+........ .....|.++...++|...+....++
T Consensus 208 l~~~~i~~i~~--d~~g~lw-igt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~G---- 279 (781)
T 3v9f_A 208 LPGNDVRCIYK--DTNGNIW-IGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNG---- 279 (781)
T ss_dssp -CCSSEEEEEE--CTTCCEE-EEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSC----
T ss_pred CCCCceeEEEE--cCCCCEE-EEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCC----
Confidence 01346887765 3444444 45544 58888876443222111 1234788998888887655432122
Q ss_pred EEEEEeCCCCeeEEEec-------------CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEe-------
Q 001163 578 YLVEWNESEGAVKRTYH-------------GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID------- 637 (1134)
Q Consensus 578 ~i~~wd~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------- 637 (1134)
|.++|..++....... ......|.++....+|. |..|+.++-|..++..++.......
T Consensus 280 -l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 357 (781)
T 3v9f_A 280 -IMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNE 357 (781)
T ss_dssp -EEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCS
T ss_pred -eEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcccccc
Confidence 8889988765432211 11223688888888775 5566767778899887654333211
Q ss_pred cCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcC
Q 001163 638 ADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLG 717 (1134)
Q Consensus 638 ~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 717 (1134)
..-....|.++...++|.+. .|+.++.|..|+..++ ....+..
T Consensus 358 ~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~--~~~~~~~---------------------------------- 400 (781)
T 3v9f_A 358 SSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKR--VAIYNKE---------------------------------- 400 (781)
T ss_dssp SCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEE--EEECC------------------------------------
T ss_pred CCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCC--eEEEccC----------------------------------
Confidence 01123457888888777654 5666667888876542 1110000
Q ss_pred CCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccC
Q 001163 718 ERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN 797 (1134)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d 797 (1134)
+.......|.++...++|...+ ++.+
T Consensus 401 -----------------------------------------------------~~~~~~~~v~~i~~d~~g~lWi-gt~~ 426 (781)
T 3v9f_A 401 -----------------------------------------------------NRELLSNSVLCSLKDSEGNLWF-GTYL 426 (781)
T ss_dssp --------------------------------------------------------CCCSBEEEEEECTTSCEEE-EETT
T ss_pred -----------------------------------------------------CCCCCCcceEEEEECCCCCEEE-Eecc
Confidence 0001335688888888887554 5554
Q ss_pred CeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEE
Q 001163 798 AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 877 (1134)
Q Consensus 798 g~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~ 877 (1134)
+.+..++.. +++........ .....|.++...++|.+.+... +.|..||..+++..
T Consensus 427 ~Gl~~~~~~----------------------~~~~~~~~~~~-~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~ 482 (781)
T 3v9f_A 427 GNISYYNTR----------------------LKKFQIIELEK-NELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVI 482 (781)
T ss_dssp EEEEEECSS----------------------SCEEEECCSTT-TCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCC
T ss_pred CCEEEEcCC----------------------CCcEEEeccCC-CCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEE
Confidence 456555432 22221111100 1346789999998888666554 67999998876654
Q ss_pred EEecCC-----CCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccC---ccCceEEEEEeeCCCEEEEEeCCC
Q 001163 878 TTFMPP-----PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG---HQKRITGLAFSNTLNVLVSSGADS 949 (1134)
Q Consensus 878 ~~~~~~-----~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~---h~~~V~~l~~s~d~~~l~s~s~Dg 949 (1134)
...... ...|.++...+ ++.+.+ |+.++-+..|+..+++...-... ....|.++...++|.+.++.. +|
T Consensus 483 ~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~G 559 (781)
T 3v9f_A 483 HHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EG 559 (781)
T ss_dssp EEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TE
T ss_pred ecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CC
Confidence 433222 35689999988 676555 45544578888876654332111 245688999988888766554 66
Q ss_pred cEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeecc-CC---CccCEEE
Q 001163 950 QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVP-RE---ASGPITH 1025 (1134)
Q Consensus 950 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~---h~~~v~~ 1025 (1134)
.|..||..+++. .......+-. ...+.++...++|++.+++ ++.|..|+..+.+.. .+.. .+ ..-...+
T Consensus 560 lv~~~d~~~~~~---~~~~~~~gl~--~~~i~~i~~d~~g~lW~~t-~~Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~ 632 (781)
T 3v9f_A 560 LVCFPSARNFDY---QVFQRKEGLP--NTHIRAISEDKNGNIWAST-NTGISCYITSKKCFY-TYDHSNNIPQGSFISGC 632 (781)
T ss_dssp EEEESCTTTCCC---EEECGGGTCS--CCCCCEEEECSSSCEEEEC-SSCEEEEETTTTEEE-EECGGGTCCSSCEEEEE
T ss_pred ceEEECCCCCcE---EEccccCCCC--CceEEEEEECCCCCEEEEc-CCceEEEECCCCceE-EecccCCccccccccCc
Confidence 448888876542 2222222222 1457889999999866655 444777887755432 2221 11 1112356
Q ss_pred EEEccCCCEEEEEecCCcEEEeecCC
Q 001163 1026 ATYSCDSQSIYVAFEEGSVGVLTAST 1051 (1134)
Q Consensus 1026 ~~~s~dg~~l~s~s~Dg~i~vwd~~~ 1051 (1134)
+...+||.+++ |+.+| +..++-..
T Consensus 633 ~~~~~~G~l~~-g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 633 VTKDHNGLIYF-GSING-LCFFNPDI 656 (781)
T ss_dssp EEECTTSCEEE-EETTE-EEEECSCC
T ss_pred eEECCCCEEEE-ECCCc-eEEEChhh
Confidence 77788888666 55677 55566443
No 191
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.55 E-value=2.2e-12 Score=140.62 Aligned_cols=241 Identities=10% Similarity=0.022 Sum_probs=171.4
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
+.....+++|+|+|+.+++++..++.|..||..++ ... +..+...+.+++++|+|++++
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~~~dg~l~v 84 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCLNKQGHLIA 84 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEECTTCCEEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeECCCCcEEE
Confidence 56678899999999978889999999999999877 221 234667899999999999988
Q ss_pred EEeCCCEEEEEEccCCceeeeeeeeec-CCCCEEEEEEecCCCceEEEE----Ee-------------CCCeEEEEECCC
Q 001163 435 VAYSKHIVHLYTYHGGDELRNHLEIEA-HVGSVNDLAFSYPNKQLSVVT----CG-------------EDRVIKVWDAVT 496 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~~~~~~~l~s----~s-------------~d~~i~iwd~~~ 496 (1134)
+...++.|.+||..+++.........+ ....+..++++|+|+ ++++ |+ ..+.|..+|..
T Consensus 85 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 85 CSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp EETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred EecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 887788999999988764321111111 123567899999998 6776 32 13456666644
Q ss_pred CceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCC-CCc---eeeecCCCCCeeEEEECcCCCEEEEEecC
Q 001163 497 GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN-LGS---RVDYDAPGHSSTMMAYSADGARLFSCGTN 572 (1134)
Q Consensus 497 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 572 (1134)
++ +..+..+......++|++ +++.+++.+.++.|.+|++.. +.. ...+......+..++++++|+..++. +
T Consensus 162 g~-~~~~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~ 236 (296)
T 3e5z_A 162 GT-LSAPIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--G 236 (296)
T ss_dssp SC-EEEEECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--T
T ss_pred CC-EEEeecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--C
Confidence 44 344555666788898855 446778888889999999873 322 12222334456789999999877665 2
Q ss_pred CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEE-cCCCCEEEEEeCCCeEEEEEcCCCce
Q 001163 573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQF-DTTKNRFLAAGDEFMIKFWDMDNVNL 632 (1134)
Q Consensus 573 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~ 632 (1134)
..|.+||.. ++.+..+..+.. +.+++| +|+++.|++++.+ .+..++..+.+.
T Consensus 237 ----~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 237 ----DGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp ----TEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred ----CeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 249999986 777777776654 778889 5888889988875 455556665543
No 192
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.54 E-value=4.1e-11 Score=130.76 Aligned_cols=282 Identities=9% Similarity=-0.024 Sum_probs=192.5
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
+...+.+++++++|+ +.++...++.|.+||.. ++.... . ...+...+.+++++++|++++
T Consensus 13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY-P-----------------LPTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE-E-----------------CSSTTCCEEEEEECTTSCEEE
T ss_pred cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe-c-----------------CCcccCceeeEEECCCCCEEE
Confidence 346799999999998 55555557899999988 543221 0 122456899999999999888
Q ss_pred EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE-EecCCCcCEEEE
Q 001163 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY-IFEGHESPVYSI 513 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~ 513 (1134)
+...++.|..||.. ++ .... .+......+.++++.++|. ++++...++.|.+||. +++... ....+...+.++
T Consensus 73 ~~~~~~~i~~~~~~-g~-~~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i 146 (299)
T 2z2n_A 73 TENAANKIGRITKK-GI-IKEY-TLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFI 146 (299)
T ss_dssp EETTTTEEEEECTT-SC-EEEE-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred eCCCCCeEEEECCC-Cc-EEEE-eCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceE
Confidence 88778899999986 33 2211 2333456789999999987 6777777889999998 665443 233345668888
Q ss_pred eccccCCccEEEEecCCCcEEEEecCCCCceee-ecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEE
Q 001163 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT 592 (1134)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 592 (1134)
++. ++|.++++...++.|..||. ++..... .......+..++++++|+..++... ...|..||. +++....
T Consensus 147 ~~~--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~~~~ 218 (299)
T 2z2n_A 147 TLG--SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEITEF 218 (299)
T ss_dssp EEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEE
T ss_pred EEc--CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC----CceEEEECC-CCcEEEE
Confidence 875 45577777777789999998 4433322 2223446789999999986665432 335999999 6664432
Q ss_pred ecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEcc
Q 001163 593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (1134)
Q Consensus 593 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 672 (1134)
........+..++++++++.+++...++.|.+||. +++ +..+....+...+.++++ ++|.+.++.. .+.+..++..
T Consensus 219 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~ 294 (299)
T 2z2n_A 219 KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLI 294 (299)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC
T ss_pred ECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcC
Confidence 12212236889999999986666657889999998 454 344433333456788999 8887766554 5677777765
Q ss_pred CC
Q 001163 673 DG 674 (1134)
Q Consensus 673 ~~ 674 (1134)
++
T Consensus 295 ~~ 296 (299)
T 2z2n_A 295 KD 296 (299)
T ss_dssp --
T ss_pred cc
Confidence 43
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.53 E-value=1.3e-12 Score=144.28 Aligned_cols=243 Identities=14% Similarity=0.109 Sum_probs=171.6
Q ss_pred CCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEe
Q 001163 844 DAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK 922 (1134)
Q Consensus 844 ~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~ 922 (1134)
.....+++.. +++.++.. ++.|.+||..+++.+.++. .......+++++ +++++++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 3456777743 44444444 7999999999999998885 456789999988 676555554899999999999988776
Q ss_pred ccCcc-----CceEEEEEeeCCCEEEEEe-CCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-
Q 001163 923 LKGHQ-----KRITGLAFSNTLNVLVSSG-ADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV- 995 (1134)
Q Consensus 923 l~~h~-----~~V~~l~~s~d~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~- 995 (1134)
+.... .....+++ .+++.+++.. .++.|.+||..+++... .+.. + .....++++|||++++++
T Consensus 121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~--~i~~--g-----~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVD--ELTI--G-----IQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEE--EEEC--S-----SCBCCCEECTTSEEEEEBC
T ss_pred EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEE--EEEc--C-----CCccceEEcCCCCEEEEEC
Confidence 65433 14556777 4454444443 48899999999866332 1222 2 124678999999977774
Q ss_pred ee----------ceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccC
Q 001163 996 HE----------TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLP 1065 (1134)
Q Consensus 996 ~d----------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 1065 (1134)
.+ +.|.++|..+++....+.... ......++|+||+++|+++.. .|.+||..+++..... +++
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~----~~~ 263 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRP----FLE 263 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSC----SBC
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeee----eec
Confidence 33 689999999998877665321 246889999999999988765 8999999998864211 111
Q ss_pred CCCCCCceeEEEEecCCCCCEEEEE----ecCCcEEEEeCCCCCCCccC
Q 001163 1066 TNPSLRVYPLVIAGNPTDPNQFALG----LTDGGVYIIEPLEAEGRWGT 1110 (1134)
Q Consensus 1066 ~~h~~~v~~~~~~~~p~~~~~l~s~----~~Dg~v~vW~~~~~~~~~~~ 1110 (1134)
. +... +-.++++|+++.++++. ..+++|.+|+.. .+..|.+
T Consensus 264 ~-~~~~--p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 264 F-RDTK--YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp C-CSSC--EEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred C-CCCc--eEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 1 1122 44458888777788877 788999999987 5555544
No 194
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.53 E-value=2.6e-13 Score=167.19 Aligned_cols=241 Identities=11% Similarity=0.040 Sum_probs=162.9
Q ss_pred CCCCeeEEEEcCCCCeEEEee------CCeEEEEEccCCeEEEEecCCCCCe--EEEEEcCCCCcEEEEEeCCCc-----
Q 001163 842 PEDAVPCFALSKNDSYVMSAS------GGKISLFNMMTFKTMTTFMPPPPAA--TFLAFHPQDNNIIAIGMEDSS----- 908 (1134)
Q Consensus 842 h~~~v~~v~~s~dg~~la~~s------dg~i~lwd~~~~~~~~~~~~~~~~v--~~l~~sp~~~~~la~g~~dg~----- 908 (1134)
|...+..++|||||++||.+. +.+|++||+.+++.+. ..+...+ ..++|+| ||+.|+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSCG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEec-CCCEEEEEEecCCCCCcc
Confidence 556788999999999999543 2579999999988641 1122222 6899999 8899999888776
Q ss_pred --------EEEEEcccce----EEEeccCccCceEEEEEeeCCCEEEEEeCCC----cEEEEECCCCccccceeeeecCC
Q 001163 909 --------IQIYNVRVDE----VKTKLKGHQKRITGLAFSNTLNVLVSSGADS----QLCVWSTDGWEKQASKFLTIPNG 972 (1134)
Q Consensus 909 --------i~iwd~~~~~----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg----~i~iwd~~~~~~~~~~~~~~~~~ 972 (1134)
|++|++.+++ ++.....|...+.++.|||||++|+.++.++ .|.+|+..+++ ...+....
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~- 271 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD---FRLLVKGV- 271 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS---CEEEEECS-
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc---eEEeecCC-
Confidence 9999998765 4455556767889999999999999887666 67777654433 12222211
Q ss_pred CCCCCCCceEEEEcCCCCEEEE-Ee----eceEEEEeCCCccc--ceeeccCCCccCEEEEEEccCCCEEEEEecCCcEE
Q 001163 973 RTASALADTRVQFHLDQTHLLA-VH----ETQIAIYEAPKLEC--LKQFVPREASGPITHATYSCDSQSIYVAFEEGSVG 1045 (1134)
Q Consensus 973 ~~~~~~~v~~l~fs~dg~~l~~-~~----d~~i~iwd~~~~~~--~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~ 1045 (1134)
..+....+ ++|. ++. +. ++.|.+||+.+++. ...+....+...+.+++|+ ++.++++...|+..+
T Consensus 272 -----~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 272 -----GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp -----SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred -----CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 12445555 6777 555 43 47899999988754 2344422225568889998 788899999999988
Q ss_pred EeecC-CCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEE-EE---ecCCcEEEEeCCCCCC
Q 001163 1046 VLTAS-TLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFA-LG---LTDGGVYIIEPLEAEG 1106 (1134)
Q Consensus 1046 vwd~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~-s~---~~Dg~v~vW~~~~~~~ 1106 (1134)
+|.+. +++....+... +.+.|..+ +++| +++.++ +. ...++|++||+...+.
T Consensus 344 l~~~~~~g~~~~~l~~~------~~~~v~~~--~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 344 VRVATLKGKPVRTVQLP------GVGAASNL--MGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEETTCCEEEECCCS------SSSEECCC--BSCT-TCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEeCCCCeeEEecCC------CCeEEEEe--ecCC-CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 88765 35444333311 12334444 6778 566555 33 2357899999876553
No 195
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.53 E-value=2.8e-11 Score=135.32 Aligned_cols=203 Identities=9% Similarity=-0.003 Sum_probs=140.7
Q ss_pred eEEEEcCCCCeEEEee---CCeEEEEEccCCeEEEE-ecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEe
Q 001163 847 PCFALSKNDSYVMSAS---GGKISLFNMMTFKTMTT-FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK 922 (1134)
Q Consensus 847 ~~v~~s~dg~~la~~s---dg~i~lwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~ 922 (1134)
..++++|||++|++++ +++|.++| .+++.+.+ +.... ++.+.|++.+.+++.+.||.+.+++. +++.+..
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 4788899999888775 36799999 99988877 65321 24555645567777888999999999 8876633
Q ss_pred cc-----CccCce-EEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCC----CCCCCCceEEEEcCCCCEE
Q 001163 923 LK-----GHQKRI-TGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGR----TASALADTRVQFHLDQTHL 992 (1134)
Q Consensus 923 l~-----~h~~~V-~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~l~fs~dg~~l 992 (1134)
.. ....++ ....+.+++..++..+..+.+.+.|+.+........+...... .........+++++|++.+
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l 281 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI 281 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence 21 112222 3356777776655555788999999976432211111111100 0001234458899999988
Q ss_pred EEEe-----------eceEEEEeCCCcccceeeccCCCccCEEEEEEccCCC-EEEEEe-cCCcEEEeecCCCcceeec
Q 001163 993 LAVH-----------ETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQ-SIYVAF-EEGSVGVLTASTLRLRCRI 1058 (1134)
Q Consensus 993 ~~~~-----------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s-~Dg~i~vwd~~~~~~~~~~ 1058 (1134)
+++. ++.|.++|..+++.+..+... ....+++|+|||+ +++++. .++.|.+||+.+++.+.++
T Consensus 282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g---~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG---HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC---CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 8842 257999999999999888642 3688999999999 777777 4899999999999998773
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.52 E-value=7e-11 Score=128.87 Aligned_cols=280 Identities=11% Similarity=0.037 Sum_probs=190.0
Q ss_pred CCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 001163 551 GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV 630 (1134)
Q Consensus 551 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 630 (1134)
...+.+++++++|+..++... ...|..||.. ++............+..+++++++..+++...++.|..||.. +
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~----~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHK----ANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETT----TTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCccceEECCCCCEEEEecC----CCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 457889999999997776532 3359999988 654432222223378899999999888777778899999986 4
Q ss_pred ceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccccccccccccc
Q 001163 631 NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANA 710 (1134)
Q Consensus 631 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1134)
+ +..+........+..++++++|.++++...++.|..|+. ++.. ..+..
T Consensus 88 ~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~--~~~~~--------------------------- 136 (299)
T 2z2n_A 88 I-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI--REYEL--------------------------- 136 (299)
T ss_dssp C-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE--EEEEC---------------------------
T ss_pred c-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE--EEecC---------------------------
Confidence 3 333332222446789999999988887777888988887 3311 11100
Q ss_pred ccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCce
Q 001163 711 NVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLA 790 (1134)
Q Consensus 711 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~ 790 (1134)
+ .....+..+++.++|+.
T Consensus 137 ------------------------------------------------------------~--~~~~~~~~i~~~~~g~l 154 (299)
T 2z2n_A 137 ------------------------------------------------------------P--NKGSYPSFITLGSDNAL 154 (299)
T ss_dssp ------------------------------------------------------------S--STTCCEEEEEECTTSCE
T ss_pred ------------------------------------------------------------C--CCCCCCceEEEcCCCCE
Confidence 0 01235678899999987
Q ss_pred eeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEE
Q 001163 791 ILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLF 869 (1134)
Q Consensus 791 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lw 869 (1134)
.++...++.+..|+. +++........ ....+..++++++|++.++.. ++.|.+|
T Consensus 155 ~v~~~~~~~i~~~~~-----------------------~g~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 209 (299)
T 2z2n_A 155 WFTENQNNAIGRITE-----------------------SGDITEFKIPT--PASGPVGITKGNDDALWFVEIIGNKIGRI 209 (299)
T ss_dssp EEEETTTTEEEEECT-----------------------TCCEEEEECSS--TTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEEeCCCCEEEEEcC-----------------------CCcEEEeeCCC--CCCcceeEEECCCCCEEEEccCCceEEEE
Confidence 777766788887754 22222111111 345678999999999777665 7899999
Q ss_pred EccCCeEEEE-ecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEe-ccCccCceEEEEEeeCCCEEEEEeC
Q 001163 870 NMMTFKTMTT-FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK-LKGHQKRITGLAFSNTLNVLVSSGA 947 (1134)
Q Consensus 870 d~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~ 947 (1134)
|. +++.... ...+...+.++++++ +++++++...++.|.+||. +++.... +..+...+.++++ +++.++++..
T Consensus 210 ~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~- 284 (299)
T 2z2n_A 210 TT-SGEITEFKIPTPNARPHAITAGA-GIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME- 284 (299)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-
T ss_pred CC-CCcEEEEECCCCCCCceeEEECC-CCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-
Confidence 99 6664432 333456789999999 7887776667889999998 4553322 3455677999999 8888877765
Q ss_pred CCcEEEEECCCC
Q 001163 948 DSQLCVWSTDGW 959 (1134)
Q Consensus 948 Dg~i~iwd~~~~ 959 (1134)
.+.+..++.+++
T Consensus 285 ~~~l~~~~~~~~ 296 (299)
T 2z2n_A 285 CDKIGKLTLIKD 296 (299)
T ss_dssp TTEEEEEEEC--
T ss_pred CCcEEEEEcCcc
Confidence 566777887663
No 197
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.52 E-value=3e-12 Score=139.62 Aligned_cols=237 Identities=11% Similarity=0.055 Sum_probs=166.1
Q ss_pred cccCCCCEEEEEEcCCCC-EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163 414 SSDYTASVNRVMWSPDGT-LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~-~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 492 (1134)
+..+.....+++|+|+|+ +++++..++.|..||..++ .. .+..+...+.+++|+++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 344566788999999998 7888888999999999887 33 3556778899999999998 67777777899999
Q ss_pred ECCCCceeEEecCC----CcCEEEEeccccCCccEEEE----ec-------------CCCcEEEEecCCCCceeeecCCC
Q 001163 493 DAVTGTKQYIFEGH----ESPVYSICPHHKENIQFIFS----TA-------------TDGKIKAWLYDNLGSRVDYDAPG 551 (1134)
Q Consensus 493 d~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s----~s-------------~dg~i~vwd~~~~~~~~~~~~~~ 551 (1134)
|..+++........ ...+..++++ ++|.++++ ++ ..+.|..++.. .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d--~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLA--PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEEC--TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEEC--CCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 98888765433221 1234567764 46677777 33 12345445443 3333444445
Q ss_pred CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC-CCee---EEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001163 552 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNES-EGAV---KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDM 627 (1134)
Q Consensus 552 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 627 (1134)
.....++|+|+++.+++... ...|++||+. +++. ...+ ......+..++++++|+.+++. ++.|.+||.
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~----~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTG----DNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp SSEEEEEECTTSCEEEEETT----TTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred CCCccEEECCCCCEEEEeCC----CCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 56789999999999844432 3469999986 5554 3444 2233356779999999866666 789999998
Q ss_pred CCCceeEEEecCCCCCCcceEEE-cCCCcEEEEEECCCcEEEEEccC
Q 001163 628 DNVNLLASIDADGGLQASPCIRF-NKEGILLAVSTNDNGIKILANAD 673 (1134)
Q Consensus 628 ~~~~~~~~~~~~~~~~~v~~v~~-sp~~~~l~~~~~dg~i~iw~~~~ 673 (1134)
. ++.+..+..+ .. +.+++| +|+++.|++++.++ +.-++..+
T Consensus 245 ~-g~~~~~~~~~--~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 245 D-GDELGRVLTP--QT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp T-SCEEEEEECS--SC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred C-CCEEEEEECC--CC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 6 7777777654 33 789999 58999898888764 33334433
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.50 E-value=7.7e-12 Score=133.68 Aligned_cols=243 Identities=12% Similarity=0.069 Sum_probs=176.7
Q ss_pred EEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCC-CCEEEEEEcCCCCEEEEEeCCCEEEEEEccC
Q 001163 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT-ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHG 449 (1134)
Q Consensus 371 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spd~~~las~s~dg~v~iwd~~~ 449 (1134)
++++++.|+.|.+||.++|+.+.+ +..+. ..+.+++++|+|++++ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 778999999999999999987653 22233 4688999999999999 45778999999 7
Q ss_pred CceeeeeeeeecC-CCCEEEEEEecCCCceEEEEEeC-CCeEEEEECCCCceeEEecC------CCcCEEEEeccccCCc
Q 001163 450 GDELRNHLEIEAH-VGSVNDLAFSYPNKQLSVVTCGE-DRVIKVWDAVTGTKQYIFEG------HESPVYSICPHHKENI 521 (1134)
Q Consensus 450 ~~~~~~~~~l~~h-~~~V~~v~~s~~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~------h~~~v~~~~~~~~~~~ 521 (1134)
|+.+.. +..+ ...+.++.+.++|+ ++++.+. ++.|..+|. +|+.+..+.. +......+++ .++|
T Consensus 65 G~~~W~---~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G 136 (276)
T 3no2_A 65 GRELWN---IAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK--NKKG 136 (276)
T ss_dssp SCEEEE---EECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE--CTTS
T ss_pred CCEEEE---EcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE--CCCC
Confidence 876663 4433 34688999999999 7787776 778888884 8888876642 1122222333 5677
Q ss_pred cEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCC---
Q 001163 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK--- 598 (1134)
Q Consensus 522 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--- 598 (1134)
+++++...++.|..||.+ ++....+... ....++.+.++|+.++++.. ...|..+|..+|+.+.++.....
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~ 210 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV 210 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence 899999999999999987 7777777654 34556788899999888753 33699999999999998864321
Q ss_pred --CceEEEEEcCCCCEEEEEeCC--------CeEEEEEc-CCCceeEEEecCCCCCCcceEE
Q 001163 599 --RSVGVVQFDTTKNRFLAAGDE--------FMIKFWDM-DNVNLLASIDADGGLQASPCIR 649 (1134)
Q Consensus 599 --~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~ 649 (1134)
..+..+...++|+.+++.... +..+++.+ .+++.+-.+........+..++
T Consensus 211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 136778888999888877421 23345555 4677777776655555555543
No 199
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.49 E-value=1.2e-11 Score=135.55 Aligned_cols=248 Identities=9% Similarity=0.038 Sum_probs=167.1
Q ss_pred EEEecCCceeeeec----------cCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCC----CCCCee
Q 001163 782 LIYTNSGLAILALA----------SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTN----PEDAVP 847 (1134)
Q Consensus 782 l~~spdg~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~----h~~~v~ 847 (1134)
++++|||++++++. .++.|.+||.. +++.......+.+ ......
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~----------------------t~~v~~~I~v~~g~r~~~g~~P~ 140 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV----------------------TLLPTADIELPDAPRFLVGTYPW 140 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT----------------------TCCEEEEEEETTCCCCCBSCCGG
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECC----------------------CCeEEEEEECCCccccccCCCCc
Confidence 89999999988776 25678887544 3333221110000 122456
Q ss_pred EEEEcCCCCeEEEee---CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc-ceEEEec
Q 001163 848 CFALSKNDSYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-DEVKTKL 923 (1134)
Q Consensus 848 ~v~~s~dg~~la~~s---dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~-~~~~~~l 923 (1134)
.++|+|||+++.++. ++.|.++|+.+++.+.++.... + ...+.. +.+.+++.+.||.+.+.++.+ ++.....
T Consensus 141 ~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~~~ 216 (386)
T 3sjl_D 141 MTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEITH 216 (386)
T ss_dssp GEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEEEE
T ss_pred eEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecC-CCceeEEECCCCCEEEEECCCCCeEEEee
Confidence 799999999888775 4789999999999999986322 2 223333 566777888899988888876 5543221
Q ss_pred cCc----cCceE-EEEEe-eCCCEEEEEeCCCcEEEEECCCCccccceeeeec------CCCCCCCCCceEEEEcCCCCE
Q 001163 924 KGH----QKRIT-GLAFS-NTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIP------NGRTASALADTRVQFHLDQTH 991 (1134)
Q Consensus 924 ~~h----~~~V~-~l~~s-~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~l~fs~dg~~ 991 (1134)
..+ ..++. ...|. ++|++++ .+.+|.|.+.|+.++.......+.+. .+-.+ .....++++++++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~~~ 293 (386)
T 3sjl_D 217 TEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRALDR 293 (386)
T ss_dssp CCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTTTE
T ss_pred cceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCCCe
Confidence 111 12222 24664 6776555 55589999999977542221112111 11111 23456888999999
Q ss_pred EEEEe-----------eceEEEEeCCCcccceeeccCCCccCEEEEEEccCCC-EEEEEe-cCCcEEEeecCCCcceeec
Q 001163 992 LLAVH-----------ETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQ-SIYVAF-EEGSVGVLTASTLRLRCRI 1058 (1134)
Q Consensus 992 l~~~~-----------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s-~Dg~i~vwd~~~~~~~~~~ 1058 (1134)
+++.. .++|.++|+.+++.+..+.. ...+.+++|++|++ +|+++. .++.|.++|..+++.+.++
T Consensus 294 lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i 370 (386)
T 3sjl_D 294 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV 370 (386)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEe
Confidence 99853 25799999999999999875 24788999999997 676654 4899999999999998887
Q ss_pred CCC
Q 001163 1059 NPT 1061 (1134)
Q Consensus 1059 ~~~ 1061 (1134)
...
T Consensus 371 ~~~ 373 (386)
T 3sjl_D 371 NQL 373 (386)
T ss_dssp CCC
T ss_pred cCC
Confidence 743
No 200
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.49 E-value=6.1e-12 Score=135.07 Aligned_cols=240 Identities=10% Similarity=0.007 Sum_probs=165.5
Q ss_pred CeeEEEEcCCCCeEE-Eee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEe
Q 001163 845 AVPCFALSKNDSYVM-SAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK 922 (1134)
Q Consensus 845 ~v~~v~~s~dg~~la-~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~ 922 (1134)
...+++++++|++++ +.. ++.|.+||..+.............+.++++++ +++++++.. ++.|.+||..+......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678999999999777 434 68899999866543322223345688999999 777666655 88999999876543322
Q ss_pred ccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEE
Q 001163 923 LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIA 1001 (1134)
Q Consensus 923 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~ 1001 (1134)
.......+.+++++++|+++++...++.|.+|+..+... ......+ . ..+..++++++|+++++. .++.|.
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~----~~~~~~~-~---~~p~~i~~~~~g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ----TVLPFTG-L---NDPDGVAVDNSGNVYVTDTDNNRVV 174 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC----EECCCCS-C---CSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee----Eeecccc-C---CCceeEEEeCCCCEEEEECCCCEEE
Confidence 222335689999999999888888888999997654321 1111111 1 246789999999966664 467999
Q ss_pred EEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecC
Q 001163 1002 IYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNP 1081 (1134)
Q Consensus 1002 iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p 1081 (1134)
+||........... .+...+.+++++++|.++++...++.|.+|+..+..... .. ..+...+ ..+++++
T Consensus 175 ~~~~~~~~~~~~~~--~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~------~~~~~~p--~~i~~~~ 243 (270)
T 1rwi_B 175 KLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP------FTGLNTP--LAVAVDS 243 (270)
T ss_dssp EECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC------CCSCSCE--EEEEECT
T ss_pred EEecCCCceEeecc--cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec------cCCCCCc--eeEEECC
Confidence 99988765433222 233678999999999887877778999999987654322 11 1111233 4457778
Q ss_pred CCCCEEEEEecCCcEEEEeCCCCCC
Q 001163 1082 TDPNQFALGLTDGGVYIIEPLEAEG 1106 (1134)
Q Consensus 1082 ~~~~~l~s~~~Dg~v~vW~~~~~~~ 1106 (1134)
+++++++...+++|+++++.+.+.
T Consensus 244 -~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 244 -DRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp -TCCEEEEEGGGTEEEEECCCGGGS
T ss_pred -CCCEEEEECCCCEEEEEcCCCccc
Confidence 578999999999999999987653
No 201
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.48 E-value=3.3e-12 Score=136.54 Aligned_cols=248 Identities=9% Similarity=0.025 Sum_probs=178.6
Q ss_pred CCCeEEEee-CCeEEEEEccCCeEEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCcc-Cce
Q 001163 854 NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPP-PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQ-KRI 930 (1134)
Q Consensus 854 dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~-~~V 930 (1134)
.+++|++++ ++.|.+||.++++.+.++..+. ..+.+++++| +|++++ +.++.|+.||. +|+.+..+..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 457788887 8999999999999999998766 4789999999 888888 45778999998 899998888653 578
Q ss_pred EEEEEeeCCCEEEEEeC-CCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCc
Q 001163 931 TGLAFSNTLNVLVSSGA-DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKL 1008 (1134)
Q Consensus 931 ~~l~~s~d~~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~ 1008 (1134)
.++.+.++|+++++.+. ++.|..+|.+ ++.... .....+..........+++.++|+++++. .++.|..||.+ |
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~--~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMK-GEVLSK--TEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEE--EEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEE--EeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 89999999999999887 7777777764 332211 11111111111235567889999999885 67999999998 9
Q ss_pred ccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEE
Q 001163 1009 ECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFA 1088 (1134)
Q Consensus 1009 ~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~ 1088 (1134)
+.+..+... ..+.++.+.++|.++++++.++.|..+|..+|+.+.++.... ++... -..+..+...+ ++++++
T Consensus 156 ~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~-~~~~~--l~~~~~~~~~~-~G~i~v 228 (276)
T 3no2_A 156 QLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND-IEGVQ--LFFVAQLFPLQ-NGGLYI 228 (276)
T ss_dssp CEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG-SBSCC--CSEEEEEEECT-TSCEEE
T ss_pred CEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC-CCCcc--ccccccceEcC-CCCEEE
Confidence 988887632 345567888999999999888899999999999988876321 11111 12233345556 677777
Q ss_pred EEecC--------CcEEEEeC-CCCCCCccCCCCCCC
Q 001163 1089 LGLTD--------GGVYIIEP-LEAEGRWGTSPPNEN 1116 (1134)
Q Consensus 1089 s~~~D--------g~v~vW~~-~~~~~~~~~~~~~~~ 1116 (1134)
+.+.. +..+++++ .+.+.-|......+-
T Consensus 229 ~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~ 265 (276)
T 3no2_A 229 CNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKF 265 (276)
T ss_dssp EEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTS
T ss_pred EeccCccccccccCCceEEEECCCCCEEEEecCcccc
Confidence 76421 23456666 466667887655553
No 202
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.48 E-value=1.2e-10 Score=130.22 Aligned_cols=278 Identities=9% Similarity=-0.040 Sum_probs=181.9
Q ss_pred EcCCCCeEEEEEe-CCC---cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEe--
Q 001163 364 FHPVQQILLVVGT-NMG---DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY-- 437 (1134)
Q Consensus 364 fsp~g~~lla~gs-~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s-- 437 (1134)
..|++++++++-. ... +|.+||..+++.+.. +..-..+ .++|||||++|+++.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~~ 86 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALASTS 86 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEecc
Confidence 4467775554432 222 899999999886543 1111223 899999999999886
Q ss_pred --------CCCEEEEEEccCCceeeeeeeee--cC---CCCEEEEEEecCCCceEEEEEeC--CCeEEEEECCCCceeEE
Q 001163 438 --------SKHIVHLYTYHGGDELRNHLEIE--AH---VGSVNDLAFSYPNKQLSVVTCGE--DRVIKVWDAVTGTKQYI 502 (1134)
Q Consensus 438 --------~dg~v~iwd~~~~~~~~~~~~l~--~h---~~~V~~v~~s~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~~ 502 (1134)
.++.|.+||..+.+.+.... +. .+ ...-..++|+|||+ +|+.+.. ++.|.++| .+++.+.+
T Consensus 87 ~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD-~t~~~~~~ 162 (373)
T 2mad_H 87 FSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVV-QGGSSDDQ 162 (373)
T ss_pred ccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEE-CCCCEEeE
Confidence 36789999999877655332 21 00 12345899999999 5555553 57899999 99998887
Q ss_pred -ecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec-----CCCCC-eeEEEECcCCCEEEEEecCCCC
Q 001163 503 -FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-----APGHS-STMMAYSADGARLFSCGTNKEG 575 (1134)
Q Consensus 503 -~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-----~~~~~-v~~~~~s~~~~~l~~~~~~~~~ 575 (1134)
+... .. +.+.+... ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+.
T Consensus 163 ~i~~~-~~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---- 232 (373)
T 2mad_H 163 LLSSP-TC---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY---- 232 (373)
T ss_pred EcCCC-ce---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC----
Confidence 6432 22 22333333 45677788999999998 555442211 11111 123456666665544433
Q ss_pred CeEEEEEeCCCCe--eEEEecCC---------CCCceEEEEEcCCCCEEEEEeC----------CCeEEEEEcCCCceeE
Q 001163 576 ESYLVEWNESEGA--VKRTYHGL---------GKRSVGVVQFDTTKNRFLAAGD----------EFMIKFWDMDNVNLLA 634 (1134)
Q Consensus 576 ~~~i~~wd~~~~~--~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~ 634 (1134)
...+.+.|+..+. .+..+... .......+.++++++.++++.. ++.|.++|..+++.+.
T Consensus 233 ~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~ 312 (373)
T 2mad_H 233 SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS 312 (373)
T ss_pred CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE
Confidence 2258888886552 22332211 1112344789999998888653 3579999999999999
Q ss_pred EEecCCCCCCcceEEEcCCCc-EEEEEE-CCCcEEEEEccCCceeEEE
Q 001163 635 SIDADGGLQASPCIRFNKEGI-LLAVST-NDNGIKILANADGIRLLRT 680 (1134)
Q Consensus 635 ~~~~~~~~~~v~~v~~sp~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~ 680 (1134)
.+...+ ....++|+|||+ +++++. .++.|.+||..++ +....
T Consensus 313 ~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~-~vv~~ 356 (373)
T 2mad_H 313 QISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG-DQDQS 356 (373)
T ss_pred EEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC-CEEee
Confidence 986532 468999999999 777776 5899999999988 44444
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.47 E-value=4.4e-12 Score=157.28 Aligned_cols=247 Identities=11% Similarity=0.061 Sum_probs=162.9
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCC-----CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCe-
Q 001163 415 SDYTASVNRVMWSPDGTLFGVAYSK-----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV- 488 (1134)
Q Consensus 415 ~~h~~~V~~l~~spd~~~las~s~d-----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~- 488 (1134)
.+|...+..++|||||++||.++.+ ..|++||+.+++.+.. ..+...+..++|+|| + .|+.++.|+.
T Consensus 159 ~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~ 231 (741)
T 1yr2_A 159 KDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPK 231 (741)
T ss_dssp ----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC-
T ss_pred cCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCcc
Confidence 3455678999999999999987654 4699999999986542 112222467899999 7 5666665543
Q ss_pred -------------EEEEECCCCc----eeEEecCCCcCEEEEeccccCCccEEEEecCCC-----cEEEEecCCC--Cce
Q 001163 489 -------------IKVWDAVTGT----KQYIFEGHESPVYSICPHHKENIQFIFSTATDG-----KIKAWLYDNL--GSR 544 (1134)
Q Consensus 489 -------------i~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~vwd~~~~--~~~ 544 (1134)
|++|++.++. .+.....+...+..+.|+ +||++|+..+.++ .|++||+.++ ...
T Consensus 232 ~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~S--pDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 309 (741)
T 1yr2_A 232 EGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVS--SDGRWVVITSSEGTDPVNTVHVARVTNGKIGPV 309 (741)
T ss_dssp -------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC--TTSCEEEEEEECTTCSCCEEEEEEEETTEECCC
T ss_pred cccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEEC--CCCCEEEEEEEccCCCcceEEEEECCCCCCccc
Confidence 8999998775 233333344457777774 5667777766543 7999999875 313
Q ss_pred eeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC--eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeE
Q 001163 545 VDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG--AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMI 622 (1134)
Q Consensus 545 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 622 (1134)
..+..+...+... ++|+|+.|+..+..+.....|.+||+.++ .....+..+ ...+..+.+. ++..+++...|+..
T Consensus 310 ~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~~l~~~~~~-~~~lv~~~~~dg~~ 386 (741)
T 1yr2_A 310 TALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES-KDNLESVGIA-GNRLFASYIHDAKS 386 (741)
T ss_dssp EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC-SSEEEEEEEE-BTEEEEEEEETTEE
T ss_pred EEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC-CCeEEEEEEE-CCEEEEEEEECCEE
Confidence 3333333334444 35999999888765444677999999875 344444433 3356677777 55667777788887
Q ss_pred EEEEcC-CCceeEEEecCCCCCCcceEEEcCCCcEEEEE-E---CCCcEEEEEccCC
Q 001163 623 KFWDMD-NVNLLASIDADGGLQASPCIRFNKEGILLAVS-T---NDNGIKILANADG 674 (1134)
Q Consensus 623 ~iwd~~-~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~---~dg~i~iw~~~~~ 674 (1134)
++|.+. +++....+..+ ....+..+.++|++..++.. + ..++|++||+.++
T Consensus 387 ~l~~~~~~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 387 QVLAFDLDGKPAGAVSLP-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEEEETTSCEEEECBCS-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEEEeCCCCceeeccCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 777554 45556666532 13467788999988765533 2 3478999999877
No 204
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.46 E-value=9.6e-12 Score=133.51 Aligned_cols=241 Identities=9% Similarity=-0.002 Sum_probs=165.2
Q ss_pred CeeEEEEcCCCCeEEE-EEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001163 358 AVKSMDFHPVQQILLV-VGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 436 (1134)
Q Consensus 358 ~V~~v~fsp~g~~lla-~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~ 436 (1134)
...+++++++|+ +++ +.+.++.|.+||..++..... ...+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence 677999999998 656 557788999999766543210 12233567889999999977666
Q ss_pred eCCCEEEEEEccCCceeeeeeeee-cCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEec
Q 001163 437 YSKHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICP 515 (1134)
Q Consensus 437 s~dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 515 (1134)
. ++.|.+||..++.... +. .....+..++++++|+ ++++...++.|.+||..+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~~----~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCEE----CCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEee----eecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 6 8899999987654321 22 2335689999999998 6777777889999986555443322233345667777
Q ss_pred cccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecC
Q 001163 516 HHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG 595 (1134)
Q Consensus 516 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 595 (1134)
++ +|.++++...++.|.+||................+..++++++|...++... ...|.+||........ ...
T Consensus 158 ~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~-~~~ 230 (270)
T 1rwi_B 158 DN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTV-LPF 230 (270)
T ss_dssp CT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TSCEEEECTTCSCCEE-CCC
T ss_pred eC--CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC----CCcEEEEcCCCCccee-ecc
Confidence 54 5577777777889999998765433322222356889999999976665532 3349999987654433 222
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce
Q 001163 596 LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL 632 (1134)
Q Consensus 596 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 632 (1134)
.....+..++++++++.+++...++.|+++++...+.
T Consensus 231 ~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 231 TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 2223678999999999888888899999999876543
No 205
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.46 E-value=2.3e-11 Score=133.26 Aligned_cols=283 Identities=11% Similarity=0.037 Sum_probs=185.5
Q ss_pred CCCCceeEEEeecCCCeeEEEEcCCCCeEEEEEe---------CCCcEEEEecCCccceeeeceeeeeccccCccccccc
Q 001163 343 DDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGT---------NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASL 413 (1134)
Q Consensus 343 d~~~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (1134)
|....+.+..+.-..... +++||||++++++.+ .++.|.+||..+++.+....+. .. ..
T Consensus 65 D~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~-----~g-~r----- 132 (386)
T 3sjl_D 65 DGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELP-----DA-PR----- 132 (386)
T ss_dssp ETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET-----TC-CC-----
T ss_pred ECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECC-----Cc-cc-----
Confidence 334466777777444444 999999998766643 4678999999998876541110 00 00
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEeC--CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEE
Q 001163 414 SSDYTASVNRVMWSPDGTLFGVAYS--KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (1134)
Q Consensus 414 ~~~h~~~V~~l~~spd~~~las~s~--dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i 491 (1134)
.........++|+|||++|.++.. ++.|.++|+.+++.+... .+.+ |....|.+.+ .+++.+.||.+.+
T Consensus 133 -~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI-~v~g------~~~~~P~g~~-~~~~~~~DG~~~~ 203 (386)
T 3sjl_D 133 -FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML-DVPD------CYHIFPTAPD-TFFMHCRDGSLAK 203 (386)
T ss_dssp -CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE-ECCS------EEEEEEEETT-EEEEEETTSCEEE
T ss_pred -cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEE-ECCC------cceeecCCCc-eeEEECCCCCEEE
Confidence 001124557999999999998864 689999999999876643 2222 1223354443 5678888999999
Q ss_pred EECCC-CceeEEecCCC----cCEE-EEeccccCCccEEEEecCCCcEEEEecCCCCceee--ec----------CCCCC
Q 001163 492 WDAVT-GTKQYIFEGHE----SPVY-SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD--YD----------APGHS 553 (1134)
Q Consensus 492 wd~~~-~~~~~~~~~h~----~~v~-~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~----------~~~~~ 553 (1134)
.++.+ ++.......+. .++. ...|. ..+|.+++ .+.+|.|.+.|+........ +. .....
T Consensus 204 v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~-~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g 281 (386)
T 3sjl_D 204 VAFGTEGTPEITHTEVFHPEDEFLINHPAYS-QKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGG 281 (386)
T ss_dssp EECCSSSCCEEEECCCCSCTTSCBCSCCEEE-TTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECS
T ss_pred EECCCCCeEEEeecceeccccccccccceeE-cCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCC
Confidence 99876 66533221111 1111 01222 24555544 55589999999875543221 11 01123
Q ss_pred eeEEEECcCCCEEEEEecC------CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCC-EEEEEe-CCCeEEEE
Q 001163 554 STMMAYSADGARLFSCGTN------KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAG-DEFMIKFW 625 (1134)
Q Consensus 554 v~~~~~s~~~~~l~~~~~~------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iw 625 (1134)
...+++++++++++..... ++....|.+.|+.+++.+..+.... .+..+.+++|++ +|+++. .++.|.++
T Consensus 282 ~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsVi 359 (386)
T 3sjl_D 282 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIH 359 (386)
T ss_dssp SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEE
T ss_pred cceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEE
Confidence 4457889999998886431 1223579999999999999887643 677899999996 777755 68999999
Q ss_pred EcCCCceeEEEecCCCCCCcceEEEcCC
Q 001163 626 DMDNVNLLASIDADGGLQASPCIRFNKE 653 (1134)
Q Consensus 626 d~~~~~~~~~~~~~~~~~~v~~v~~sp~ 653 (1134)
|..+++.+.++...++ -+.+.+++|
T Consensus 360 D~~t~k~~~~i~~~~~---p~~l~~s~d 384 (386)
T 3sjl_D 360 DAESGEELRSVNQLGH---GPQVITTAD 384 (386)
T ss_dssp ETTTCCEEEEECCCCS---SCCEEEECC
T ss_pred ECCCCcEEEEecCCCC---CceeEECCc
Confidence 9999999999976544 356677665
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.45 E-value=4.2e-10 Score=122.73 Aligned_cols=279 Identities=10% Similarity=-0.017 Sum_probs=189.9
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
....+.+++++++|+ +.++...++.|.+||.. ++... +. +..+...+.+++++++|++.+
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~---~~---------------~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKE---FE---------------VPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEE---EE---------------CSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEE---EE---------------CCCCCCcceeEEECCCCCEEE
Confidence 346788999999998 55666678899999987 54322 10 122346799999999999888
Q ss_pred EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE-EecCCCcCEEEE
Q 001163 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY-IFEGHESPVYSI 513 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~ 513 (1134)
+...++.|..||.. ++.. . ..+......+.++++.++|. ++++...++.|..+|.. ++... .+......+.++
T Consensus 78 ~~~~~~~v~~~d~~-g~~~-~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i 151 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGFT-E-YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI 151 (300)
T ss_dssp EETTTTEEEEECTT-SCEE-E-EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred EecCCCeEEEECCC-CCeE-E-ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence 87778899999988 5432 1 12333446789999999988 67777668899999977 66543 233345567888
Q ss_pred eccccCCccEEEEecCCCcEEEEecCCCCceee-ecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEE
Q 001163 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT 592 (1134)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 592 (1134)
++. +++.++++...++.|..||. ....... .......+..++++++|+..++... ...|..||. +++....
T Consensus 152 ~~d--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 152 TLG--SDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEISEY 223 (300)
T ss_dssp EEC--TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEE
T ss_pred EEC--CCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEEEE
Confidence 875 45577777766788999987 3332221 2223346889999999976665432 335899998 5554443
Q ss_pred ecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163 593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (1134)
Q Consensus 593 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 671 (1134)
........+..++++++++.+++...++.|..||. +++.. .+........+.+++++++|.+.++.. . .|..++.
T Consensus 224 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 224 DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 22222236788999999986666656789999998 45433 333222345678999999998666544 4 6666654
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.44 E-value=3.8e-11 Score=134.35 Aligned_cols=205 Identities=11% Similarity=0.072 Sum_probs=142.4
Q ss_pred eEEEEcCCCCeEEEee---CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEe-
Q 001163 847 PCFALSKNDSYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK- 922 (1134)
Q Consensus 847 ~~v~~s~dg~~la~~s---dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~- 922 (1134)
..++|+|||++++++. ++.|.+.|+.+++.+.++.... . ....|++.+.+++.+.||.+.+.+..+++....
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 4578889998888875 3689999999999998876422 1 333442445666777788888888766654422
Q ss_pred ---ccCccCce-EEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCC-C---CCCCceEEEEcCCCCEEEE
Q 001163 923 ---LKGHQKRI-TGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRT-A---SALADTRVQFHLDQTHLLA 994 (1134)
Q Consensus 923 ---l~~h~~~V-~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-~---~~~~v~~l~fs~dg~~l~~ 994 (1134)
+.....++ ..+.|++++..++..+..+.|.+.|+.+..........+..... . .......++|++|++.+++
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 22222222 23578999988888788899999998764422111111110000 0 0012334789999998888
Q ss_pred Ee-----------eceEEEEeCCCcccceeeccCCCccCEEEEEEccCCC-EEEEEe-cCCcEEEeecCCCcceeec
Q 001163 995 VH-----------ETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQ-SIYVAF-EEGSVGVLTASTLRLRCRI 1058 (1134)
Q Consensus 995 ~~-----------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s-~Dg~i~vwd~~~~~~~~~~ 1058 (1134)
+. +++|.++|..+++.+..+... ....+++|+|||+ +++++. .++.|.|+|+.+++.+.++
T Consensus 336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 336 LVDQRDEWKHKAASRFVVVLNAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EecccccccccCCCCEEEEEECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 53 357999999999999998742 3588999999999 888888 5899999999999998886
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.40 E-value=1e-09 Score=119.68 Aligned_cols=277 Identities=12% Similarity=0.059 Sum_probs=185.9
Q ss_pred CCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 001163 551 GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV 630 (1134)
Q Consensus 551 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 630 (1134)
.....++++.++|+..++... ...|..||.. ++............+..+++.++++.+++...++.|..||.. +
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHK----ANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETT----TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcceeeECCCCCEEEEcCC----CCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 446789999999987776532 3459999988 655432222222368889999999877777678899999988 5
Q ss_pred ceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccccccccccccc
Q 001163 631 NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANA 710 (1134)
Q Consensus 631 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1134)
+.. .+........+..+++.++|.++++...++.|..|+.. +. .. .+.
T Consensus 93 ~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~-~~~---------------------------- 140 (300)
T 2qc5_A 93 GFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT-IY-EYD---------------------------- 140 (300)
T ss_dssp CEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-EE-EEE----------------------------
T ss_pred CeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC-EE-Ecc----------------------------
Confidence 543 33332223567899999999888777667888888765 31 11 110
Q ss_pred ccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCce
Q 001163 711 NVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLA 790 (1134)
Q Consensus 711 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~ 790 (1134)
+ + .....+.++++.++|+.
T Consensus 141 ---------------------------------------------~--------------~--~~~~~~~~i~~d~~g~l 159 (300)
T 2qc5_A 141 ---------------------------------------------L--------------P--NKGSYPAFITLGSDNAL 159 (300)
T ss_dssp ---------------------------------------------C--------------S--STTCCEEEEEECTTSSE
T ss_pred ---------------------------------------------C--------------C--CCCCCceeEEECCCCCE
Confidence 0 0 01234678899999996
Q ss_pred eeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEE
Q 001163 791 ILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLF 869 (1134)
Q Consensus 791 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lw 869 (1134)
.++...++.+..|+.. +......... +...+..++++++|.+.++.. .+.|.+|
T Consensus 160 ~v~~~~~~~i~~~~~~-----------------------g~~~~~~~~~--~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 214 (300)
T 2qc5_A 160 WFTENQNNSIGRITNT-----------------------GKLEEYPLPT--NAAAPVGITSGNDGALWFVEIMGNKIGRI 214 (300)
T ss_dssp EEEETTTTEEEEECTT-----------------------CCEEEEECSS--TTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEEecCCCeEEEECCC-----------------------CcEEEeeCCC--CCCCcceEEECCCCCEEEEccCCCEEEEE
Confidence 6666667778777542 1111111111 345678999999998777665 5789999
Q ss_pred EccCCeEEEE-ecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEE-EeccCccCceEEEEEeeCCCEEEEEeC
Q 001163 870 NMMTFKTMTT-FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK-TKLKGHQKRITGLAFSNTLNVLVSSGA 947 (1134)
Q Consensus 870 d~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~-~~l~~h~~~V~~l~~s~d~~~l~s~s~ 947 (1134)
|. +++.... +......+.++++++ +++++++...++.|..|+. +++.. ..+......+.++++.++|+++++..
T Consensus 215 ~~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~- 290 (300)
T 2qc5_A 215 TT-TGEISEYDIPTPNARPHAITAGK-NSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK- 290 (300)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-
T ss_pred cC-CCcEEEEECCCCCCCceEEEECC-CCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-
Confidence 98 5554433 333456789999999 7877777666789999998 45433 22343456688999999998777655
Q ss_pred CCcEEEEEC
Q 001163 948 DSQLCVWST 956 (1134)
Q Consensus 948 Dg~i~iwd~ 956 (1134)
. .|..+|.
T Consensus 291 ~-~i~~~~p 298 (300)
T 2qc5_A 291 C-KIGKLNL 298 (300)
T ss_dssp S-EEEEEEE
T ss_pred C-ceEEeCC
Confidence 4 6776664
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.39 E-value=3.2e-11 Score=149.51 Aligned_cols=245 Identities=9% Similarity=-0.028 Sum_probs=158.5
Q ss_pred CCeeEEEEcCCCCeEEEEEeCCC----cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCE
Q 001163 357 SAVKSMDFHPVQQILLVVGTNMG----DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (1134)
Q Consensus 357 ~~V~~v~fsp~g~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 432 (1134)
..+..++|||||++|+.+.+.+| .|++||+.+|+.+.. ..+...+..++|||| +.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--------------------~~~~~~~~~~~wspD-~~ 221 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--------------------ELKWVKFSGLAWLGN-DA 221 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--------------------EEEEEESCCCEESTT-SE
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--------------------cCCCceeccEEEECC-CE
Confidence 36889999999997766555444 599999999986542 011122357899999 99
Q ss_pred EEEEeCCCE--------------EEEEEccCCceee-eeeeeecCCCCEEEEEEecCCCceEEEEEeC-----CCeEEEE
Q 001163 433 FGVAYSKHI--------------VHLYTYHGGDELR-NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-----DRVIKVW 492 (1134)
Q Consensus 433 las~s~dg~--------------v~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-----d~~i~iw 492 (1134)
|+.++.++. |++|++.++.... .......|...+..+.|+|||+ +|+..+. ...|.+|
T Consensus 222 l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~~~~l~~~ 299 (741)
T 1yr2_A 222 LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR--WVVITSSEGTDPVNTVHVA 299 (741)
T ss_dssp EEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC--EEEEEEECTTCSCCEEEEE
T ss_pred EEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC--EEEEEEEccCCCcceEEEE
Confidence 998887654 8999998775311 1111223444689999999999 4555443 3489999
Q ss_pred ECCCC--ceeEEecCCCcCEEEEeccccCCccEEEEecC----CCcEEEEecCCCC-c-eeeecCCCCCeeEEEECcCCC
Q 001163 493 DAVTG--TKQYIFEGHESPVYSICPHHKENIQFIFSTAT----DGKIKAWLYDNLG-S-RVDYDAPGHSSTMMAYSADGA 564 (1134)
Q Consensus 493 d~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~----dg~i~vwd~~~~~-~-~~~~~~~~~~v~~~~~s~~~~ 564 (1134)
|+.++ ++...+..+...+.... . ++|..|+..+. ++.|.+||+.... . ...+..+...+..+.++ ++.
T Consensus 300 d~~~~~~~~~~~l~~~~~~~~~~~-~--~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~ 375 (741)
T 1yr2_A 300 RVTNGKIGPVTALIPDLKAQWDFV-D--GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNR 375 (741)
T ss_dssp EEETTEECCCEEEECSSSSCEEEE-E--EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTE
T ss_pred ECCCCCCcccEEecCCCCceEEEE-e--ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCE
Confidence 99887 41455555555554443 2 34466666554 3459999987642 2 22333333345667776 444
Q ss_pred EEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe----CCCeEEEEEcCCCc
Q 001163 565 RLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG----DEFMIKFWDMDNVN 631 (1134)
Q Consensus 565 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~ 631 (1134)
.+++... ++...|+++++. +.....+.......+..+.++|+++.++... ..++|++||+.+++
T Consensus 376 lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 376 LFASYIH--DAKSQVLAFDLD-GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEE--TTEEEEEEEETT-SCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEE--CCEEEEEEEeCC-CCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 5555544 335567777764 5556666654344688899999987665332 45789999998887
No 210
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.36 E-value=1.2e-10 Score=130.21 Aligned_cols=279 Identities=11% Similarity=0.108 Sum_probs=187.4
Q ss_pred CCCCeEEEEEeCC----CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEe----
Q 001163 366 PVQQILLVVGTNM----GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY---- 437 (1134)
Q Consensus 366 p~g~~lla~gs~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s---- 437 (1134)
|++++++++...+ +.|.++|..+++.+.... .+ ..+ .+++||||++|.++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~------------------vG-~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTD------------------GG-FLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------EC-SSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEE------------------CC-CCC--ceEECCCCCEEEEEecccc
Confidence 4666666665544 799999999998876421 12 224 799999999888876
Q ss_pred ------CCCEEEEEEccCCceeeeeeeee--c---CCCCEEEEEEecCCCceEEEEEe--CCCeEEEEECCCCceeEEec
Q 001163 438 ------SKHIVHLYTYHGGDELRNHLEIE--A---HVGSVNDLAFSYPNKQLSVVTCG--EDRVIKVWDAVTGTKQYIFE 504 (1134)
Q Consensus 438 ------~dg~v~iwd~~~~~~~~~~~~l~--~---h~~~V~~v~~s~~~~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~ 504 (1134)
.++.|.++|..+++.+.... +. . .......++|+|||+ +++.+. .++.|.+.|+.+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk--~lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNK--NLLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSS--EEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCC--EEEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 46789999999988766432 22 0 112345789999999 455554 36899999999999998876
Q ss_pred CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCcee----eecCCCCC-eeEEEECcCCCEEEEEecCCCCCeEE
Q 001163 505 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV----DYDAPGHS-STMMAYSADGARLFSCGTNKEGESYL 579 (1134)
Q Consensus 505 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i 579 (1134)
--.. ....+.+. ..+++.+.||.+.+.+....+... .+.....+ ...+.+++++..++..... +.+
T Consensus 218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~----g~V 288 (426)
T 3c75_H 218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYT----GKI 288 (426)
T ss_dssp CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTT----SEE
T ss_pred cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCC----CcE
Confidence 4221 12223332 456667778888888874433321 11111112 2245679998887776542 358
Q ss_pred EEEeCCCCeeE--EEecCC---------CCCceEEEEEcCCCCEEEEEeC----------CCeEEEEEcCCCceeEEEec
Q 001163 580 VEWNESEGAVK--RTYHGL---------GKRSVGVVQFDTTKNRFLAAGD----------EFMIKFWDMDNVNLLASIDA 638 (1134)
Q Consensus 580 ~~wd~~~~~~~--~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~ 638 (1134)
.+.|....... ..+... .......++++++++++++... ++.|.+.|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 89998655422 111110 0001223689999988877642 35799999999999999875
Q ss_pred CCCCCCcceEEEcCCCc-EEEEEE-CCCcEEEEEccCCceeEEEe
Q 001163 639 DGGLQASPCIRFNKEGI-LLAVST-NDNGIKILANADGIRLLRTV 681 (1134)
Q Consensus 639 ~~~~~~v~~v~~sp~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~ 681 (1134)
.. ....++|+|||+ ++++.. .++.|.++|..++ +.++.+
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~tI 409 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRSV 409 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEE
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEEe
Confidence 32 467999999998 888888 5899999999998 555554
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.34 E-value=1.6e-10 Score=127.19 Aligned_cols=245 Identities=9% Similarity=0.017 Sum_probs=163.5
Q ss_pred ccEEEEEEecCCceeee-------eccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCC-CCCCCCCeeE
Q 001163 777 MRVSRLIYTNSGLAILA-------LASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS-DTNPEDAVPC 848 (1134)
Q Consensus 777 ~~i~~l~~spdg~~l~~-------~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~h~~~v~~ 848 (1134)
....+++|+++|..+++ ...++.+.+|+... ++....... ..++...+..
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~----------------------g~~~~~~~~~~~~~~~~~~~ 75 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT----------------------GKKTVICKPEVNGYGGIPAG 75 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT----------------------CCEEEEECCEETTEECCEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCC----------------------CcEEEEEecccCCCCCCCce
Confidence 34678999999987777 56778888886432 222111010 0013456889
Q ss_pred EEEcCC-CCeEEEeeCCeEEEEEccCCeEEEE-ecC----CCCCeEEEEEcCCCCcEEEEEeCC---------------C
Q 001163 849 FALSKN-DSYVMSASGGKISLFNMMTFKTMTT-FMP----PPPAATFLAFHPQDNNIIAIGMED---------------S 907 (1134)
Q Consensus 849 v~~s~d-g~~la~~sdg~i~lwd~~~~~~~~~-~~~----~~~~v~~l~~sp~~~~~la~g~~d---------------g 907 (1134)
++++++ |+++++..++.|.+||.. ++.... ... ....+.++++++ +++++++...+ +
T Consensus 76 i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 76 CQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp EEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCC
Confidence 999999 776666656689999998 665433 221 123488999999 78887776655 5
Q ss_pred cEEEEEcccceEEEeccCccCceEEEEEe----eCCCEEE-EEeCCCcEEEEECC-CCccccceeeeecCCCCCCCCCce
Q 001163 908 SIQIYNVRVDEVKTKLKGHQKRITGLAFS----NTLNVLV-SSGADSQLCVWSTD-GWEKQASKFLTIPNGRTASALADT 981 (1134)
Q Consensus 908 ~i~iwd~~~~~~~~~l~~h~~~V~~l~~s----~d~~~l~-s~s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~ 981 (1134)
.|..|+.. ++... +..+......++|+ ++++.|+ +...++.|.+|++. .++...........++.. ..+.
T Consensus 154 ~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~--~~p~ 229 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE--GGAD 229 (314)
T ss_dssp EEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS--CEEE
T ss_pred eEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC--CCCC
Confidence 67777765 55433 22344456889999 9997654 44567899999986 333221112222222210 2367
Q ss_pred EEEEcCCCCEEEEE-eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEE-EEecCCcEEEeecCC
Q 001163 982 RVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIY-VAFEEGSVGVLTAST 1051 (1134)
Q Consensus 982 ~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~-s~s~Dg~i~vwd~~~ 1051 (1134)
.++++++|++.++. .++.|.+||..+++.+..+. .+...+.+++|++||++|+ +...++.|..|++..
T Consensus 230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE--CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe--CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 89999999887774 57899999998787776665 3457899999999999655 445568899999865
No 212
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.32 E-value=3.7e-10 Score=124.12 Aligned_cols=243 Identities=12% Similarity=0.081 Sum_probs=162.5
Q ss_pred CCCEEEEEEcCCCCEEEE-------EeCCCEEEEEEccCCceeeeee-eeecCCCCEEEEEEecC-CCceEEEEEeCCCe
Q 001163 418 TASVNRVMWSPDGTLFGV-------AYSKHIVHLYTYHGGDELRNHL-EIEAHVGSVNDLAFSYP-NKQLSVVTCGEDRV 488 (1134)
Q Consensus 418 ~~~V~~l~~spd~~~las-------~s~dg~v~iwd~~~~~~~~~~~-~l~~h~~~V~~v~~s~~-~~~~~l~s~s~d~~ 488 (1134)
-....+++|+++|+++++ +..++.|.+||..+++...... ...++...+.+++++++ |+ ++++. .++.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~--l~v~~-~~~~ 93 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ--LFVAD-MRLG 93 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE--EEEEE-TTTE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc--EEEEE-CCCC
Confidence 346689999999998888 6778899999988876432100 01125567999999999 65 34444 3457
Q ss_pred EEEEECCCCceeEE-ecC----CCcCEEEEeccccCCccEEEEecCC---------------CcEEEEecCCCCceeeec
Q 001163 489 IKVWDAVTGTKQYI-FEG----HESPVYSICPHHKENIQFIFSTATD---------------GKIKAWLYDNLGSRVDYD 548 (1134)
Q Consensus 489 i~iwd~~~~~~~~~-~~~----h~~~v~~~~~~~~~~~~~l~s~s~d---------------g~i~vwd~~~~~~~~~~~ 548 (1134)
|.+||.. ++.... ... ....+.++++++ +|.++++...+ +.|..|+.. ++ ...+.
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~--~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~ 168 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY--EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MIQVD 168 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT--TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EEEEE
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECC--CCCEEEEecCcccccccccccccCCCCeEEEECCC-CC-EEEec
Confidence 9999988 765433 221 123477888754 55777766554 456666654 22 22222
Q ss_pred CCCCCeeEEEEC----cCCCEEEEEecCCCCCeEEEEEeCC-CCee-----EEEecCCCCCceEEEEEcCCCCEEEEEeC
Q 001163 549 APGHSSTMMAYS----ADGARLFSCGTNKEGESYLVEWNES-EGAV-----KRTYHGLGKRSVGVVQFDTTKNRFLAAGD 618 (1134)
Q Consensus 549 ~~~~~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 618 (1134)
........++++ |+++.++.+.. ....|.+||.. +++. ...+..+.......++++++|+.+++...
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~---~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAET---PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred cCCCCcceEEEecccCCCCCEEEEEEC---CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence 222346788999 99987666542 13469999976 4432 22333322025778999999988888878
Q ss_pred CCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEE-ECCCcEEEEEccC
Q 001163 619 EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS-TNDNGIKILANAD 673 (1134)
Q Consensus 619 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~~dg~i~iw~~~~ 673 (1134)
++.|.+||..+++.+..+..+ ...+.+++++++++.|+++ ..++.|..|++..
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCEEEEEcCCCCcEeEEEeCC--CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 899999999878877777644 3568899999999955544 4568898888764
No 213
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.29 E-value=4.8e-10 Score=137.47 Aligned_cols=249 Identities=11% Similarity=0.058 Sum_probs=164.1
Q ss_pred CCeeEEEEcCCCCeEEEEEeCC----CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCE
Q 001163 357 SAVKSMDFHPVQQILLVVGTNM----GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (1134)
Q Consensus 357 ~~V~~v~fsp~g~~lla~gs~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 432 (1134)
..+..++|||||++++.+.+.. .+|++||+.+|+.+.. . + +......++|+ ||+.
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~--~~~k~~~~~Ws-Dg~~ 187 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------L--KDVKFSGISWL-GNEG 187 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------E--EEEESCCCEEE-TTTE
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------c--CCceeccEEEe-CCCE
Confidence 4577899999999776554433 4799999999986542 0 0 11113568999 9999
Q ss_pred EEEEeCCC-------------EEEEEEccCCceee-eeeeeec-CCCCEEEEEEecCCCceEEEEEe---CCCeEEEEEC
Q 001163 433 FGVAYSKH-------------IVHLYTYHGGDELR-NHLEIEA-HVGSVNDLAFSYPNKQLSVVTCG---EDRVIKVWDA 494 (1134)
Q Consensus 433 las~s~dg-------------~v~iwd~~~~~~~~-~~~~l~~-h~~~V~~v~~s~~~~~~~l~s~s---~d~~i~iwd~ 494 (1134)
|+.++.+. .|++|++.++..-. ....... |...+..+.|+|||+.+ +++.+ .++.|.+||+
T Consensus 188 l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~d~ 266 (693)
T 3iuj_A 188 FFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYVKDL 266 (693)
T ss_dssp EEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEEEET
T ss_pred EEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEEEEC
Confidence 99998874 49999998765311 1112233 55567899999999963 33433 2358999999
Q ss_pred CCCc-eeEEecCCCcCEEEEeccccCCccEEEEecCC---CcEEEEecCCCCc--eeeecCCCCCeeEEEECcCCCEEEE
Q 001163 495 VTGT-KQYIFEGHESPVYSICPHHKENIQFIFSTATD---GKIKAWLYDNLGS--RVDYDAPGHSSTMMAYSADGARLFS 568 (1134)
Q Consensus 495 ~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~ 568 (1134)
.++. ....+..+....... +.+.+ +.+++....+ +.|..+|+..... ...+..+...+. .|+++++.|+.
T Consensus 267 ~~~~~~~~~l~~~~~~~~~~-~~~~g-~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~ 342 (693)
T 3iuj_A 267 SQENAPLLTVQGDLDADVSL-VDNKG-STLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFA 342 (693)
T ss_dssp TSTTCCCEEEECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEE
T ss_pred CCCCCceEEEeCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEE
Confidence 8774 455565566555544 33333 2455555444 5788999887654 123444444444 89999999887
Q ss_pred EecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC----CeEEEEEcCCCcee
Q 001163 569 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE----FMIKFWDMDNVNLL 633 (1134)
Q Consensus 569 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~ 633 (1134)
...+ ++...|++||+..+. ...+.......+..+.++++++.++....+ +.|+.||+.+++..
T Consensus 343 ~~~~-~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 343 EYMV-DATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEE-TTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEE-CCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 7654 345679999988544 444443333356677788888777665544 78999999887643
No 214
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.28 E-value=2.1e-10 Score=127.63 Aligned_cols=273 Identities=11% Similarity=0.030 Sum_probs=174.6
Q ss_pred CCeeEEEEcCCCCeEEEEEe--CCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 357 SAVKSMDFHPVQQILLVVGT--NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 357 ~~V~~v~fsp~g~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
..+..++++|+|+ ++++.. .++.+.||.+.+++.. .+.-|. ....+|-..+..++|+++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 6889999999998 555543 2343666666544322 111010 01235667999999999998777
Q ss_pred EEeC-----CCEEEEEEccCCceeeeeeeee----cCCCCEEEEEEecCCCceEEEEEe---CCCeEEEEECCCCceeEE
Q 001163 435 VAYS-----KHIVHLYTYHGGDELRNHLEIE----AHVGSVNDLAFSYPNKQLSVVTCG---EDRVIKVWDAVTGTKQYI 502 (1134)
Q Consensus 435 s~s~-----dg~v~iwd~~~~~~~~~~~~l~----~h~~~V~~v~~s~~~~~~~l~s~s---~d~~i~iwd~~~~~~~~~ 502 (1134)
+-.. ++.|.+||+.+++.++.. .+. .+...+..+++++++.. ++++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6544 578999999998855432 222 22345789999987653 456655 688999999999988777
Q ss_pred ecCCCcCEE-EEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEE
Q 001163 503 FEGHESPVY-SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581 (1134)
Q Consensus 503 ~~~h~~~v~-~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 581 (1134)
+.+|..... ...+. .+|..+.+.+.++.++.|. ..+..++++|+|+.|+.+...+ ..++.
T Consensus 161 ~~~~~~~~~~~~~~~--~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~---~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLV--IDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHS---TSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCCE--ETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSC---SEEEE
T ss_pred ecCCCccccccccee--ECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCC---CeEEE
Confidence 766532111 01222 2345666777788876663 2357899999999988876432 24555
Q ss_pred EeCC---CCe-----eEE--EecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEc
Q 001163 582 WNES---EGA-----VKR--TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN 651 (1134)
Q Consensus 582 wd~~---~~~-----~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 651 (1134)
++.. .+. ... ...++.. ....++++++|+.+++...++.|.+||..+++....... ........++|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-~~~~~p~~va~~ 299 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD-EKLSWTDSFNFG 299 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC-GGGSCEEEEEEC
T ss_pred EEHHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC-CceecCCeeEEC
Confidence 5532 110 000 1111111 345689999999888888899999999866664433332 123457799999
Q ss_pred CCCcEEEEEECCCcE
Q 001163 652 KEGILLAVSTNDNGI 666 (1134)
Q Consensus 652 p~~~~l~~~~~dg~i 666 (1134)
+++.++++.+..+.+
T Consensus 300 ~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 300 SDGYLYFDCNQLHHS 314 (343)
T ss_dssp TTSCEEEEECCGGGS
T ss_pred CCCcEEEEeCccccc
Confidence 998887777654444
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.25 E-value=1.2e-09 Score=118.71 Aligned_cols=229 Identities=10% Similarity=0.065 Sum_probs=150.9
Q ss_pred ccEEEEEEecCC-ceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCC
Q 001163 777 MRVSRLIYTNSG-LAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND 855 (1134)
Q Consensus 777 ~~i~~l~~spdg-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg 855 (1134)
....+..|++++ ..+++...++.|..|+.. ++...... ....+.+++++++|
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~----------------------~~~~~~~~-----~~~~~~~i~~~~dG 65 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSF----------------------TKQVQRVT-----MDAPVSSVALRQSG 65 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETT----------------------TCCEEEEE-----CSSCEEEEEEBTTS
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECC----------------------CCcEEEEe-----CCCceEEEEECCCC
Confidence 345688899964 455555567888888654 22221111 34568899999999
Q ss_pred CeEEEeeCCeEEEEEccCCeEEEEecCC----CCCeEEEEEcCCCCcEEEEEeCC---------CcEEEEEccc-ceEEE
Q 001163 856 SYVMSASGGKISLFNMMTFKTMTTFMPP----PPAATFLAFHPQDNNIIAIGMED---------SSIQIYNVRV-DEVKT 921 (1134)
Q Consensus 856 ~~la~~sdg~i~lwd~~~~~~~~~~~~~----~~~v~~l~~sp~~~~~la~g~~d---------g~i~iwd~~~-~~~~~ 921 (1134)
+++++ .++.|.+||..+++........ ...+..++++| +|+++++...+ ..-.||.+.. ++..
T Consensus 66 ~l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~- 142 (297)
T 3g4e_A 66 GYVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK- 142 (297)
T ss_dssp SEEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-
T ss_pred CEEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEE-
Confidence 95554 5778999999887654333221 23478899999 78877654322 2345565543 3332
Q ss_pred eccCccCceEEEEEeeCCCEEE-EEeCCCcEEEEEC--CCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-ee
Q 001163 922 KLKGHQKRITGLAFSNTLNVLV-SSGADSQLCVWST--DGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HE 997 (1134)
Q Consensus 922 ~l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d 997 (1134)
.+..+......++|+||++.|+ +.+.++.|.+|++ .++.......+....... .....++++++|++.++. .+
T Consensus 143 ~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~---~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 143 KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE---QIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG---CEEEEEEEBTTSCEEEEEETT
T ss_pred EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC---CCCCeeEECCCCCEEEEEcCC
Confidence 2333444567899999998764 5566788999997 444432222222211111 246789999999877664 45
Q ss_pred ceEEEEeCCCcccceeeccCCCccCEEEEEEc-cCCCEEEEEec
Q 001163 998 TQIAIYEAPKLECLKQFVPREASGPITHATYS-CDSQSIYVAFE 1040 (1134)
Q Consensus 998 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s-~dg~~l~s~s~ 1040 (1134)
+.|..||..+++.+..+. .+...+++++|. ||++.|+.++.
T Consensus 220 ~~v~~~d~~tG~~~~~i~--~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVK--LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TEEEEECTTTCCEEEEEE--CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CEEEEEcCCCceEEEEEE--CCCCCceEEEEeCCCCCEEEEEcC
Confidence 789999999999888876 335689999998 89888776654
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.24 E-value=2e-09 Score=116.91 Aligned_cols=227 Identities=10% Similarity=0.071 Sum_probs=152.4
Q ss_pred CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEe
Q 001163 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 437 (1134)
Q Consensus 358 ~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s 437 (1134)
-..+..|+|++..|+++...++.|..||..+++... ......+.+++++|+|+++++.
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---------------------~~~~~~~~~i~~~~dG~l~v~~- 71 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR---------------------VTMDAPVSSVALRQSGGYVATI- 71 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE---------------------EECSSCEEEEEEBTTSSEEEEE-
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE---------------------EeCCCceEEEEECCCCCEEEEE-
Confidence 445899999877788888889999999998875421 1134679999999999966554
Q ss_pred CCCEEEEEEccCCceeeeeeeeec--CCCCEEEEEEecCCCceEEEEEeC---------CCeEEEEECCC-CceeEEecC
Q 001163 438 SKHIVHLYTYHGGDELRNHLEIEA--HVGSVNDLAFSYPNKQLSVVTCGE---------DRVIKVWDAVT-GTKQYIFEG 505 (1134)
Q Consensus 438 ~dg~v~iwd~~~~~~~~~~~~l~~--h~~~V~~v~~s~~~~~~~l~s~s~---------d~~i~iwd~~~-~~~~~~~~~ 505 (1134)
++.|.+||..+++.. ....... ....++.++++|+|+ ++++... .....+|.+.. ++.. .+..
T Consensus 72 -~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~ 146 (297)
T 3g4e_A 72 -GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYFD 146 (297)
T ss_dssp -TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEEE
T ss_pred -CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEE-EEee
Confidence 567999999887632 2212211 224588999999998 4554322 12334555443 3333 2333
Q ss_pred CCcCEEEEeccccCCccE-EEEecCCCcEEEEecC--CCCce--e---eecCCCCCeeEEEECcCCCEEEEEecCCCCCe
Q 001163 506 HESPVYSICPHHKENIQF-IFSTATDGKIKAWLYD--NLGSR--V---DYDAPGHSSTMMAYSADGARLFSCGTNKEGES 577 (1134)
Q Consensus 506 h~~~v~~~~~~~~~~~~~-l~s~s~dg~i~vwd~~--~~~~~--~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 577 (1134)
+....+.++|+++ ++. +++.+.++.|.+|+++ ++... . .+.........++++++|+..++... ..
T Consensus 147 ~~~~pngi~~spd--g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~----~~ 220 (297)
T 3g4e_A 147 QVDISNGLDWSLD--HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN----GG 220 (297)
T ss_dssp EESBEEEEEECTT--SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET----TT
T ss_pred ccccccceEEcCC--CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC----CC
Confidence 3445678888654 454 4666778899999974 22211 1 11112345678999999987766543 23
Q ss_pred EEEEEeCCCCeeEEEecCCCCCceEEEEEc-CCCCEEEEEeC
Q 001163 578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFD-TTKNRFLAAGD 618 (1134)
Q Consensus 578 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~ 618 (1134)
.|..||..+++.+..+..... .+.+++|. |+++.|++++.
T Consensus 221 ~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 221 RVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEEEB
T ss_pred EEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEEcC
Confidence 599999999999888877654 78999998 88887776663
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.23 E-value=3.8e-09 Score=119.90 Aligned_cols=240 Identities=12% Similarity=0.015 Sum_probs=161.5
Q ss_pred CCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001163 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 436 (1134)
Q Consensus 357 ~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~ 436 (1134)
.....|+|+++|+ |+++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4678999999998 777777889999999988765431 111 12223 9999999999998
Q ss_pred eCCC--EEEEEEccCCceeeeeeeeec-CCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEE----ecCCCcC
Q 001163 437 YSKH--IVHLYTYHGGDELRNHLEIEA-HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI----FEGHESP 509 (1134)
Q Consensus 437 s~dg--~v~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~----~~~h~~~ 509 (1134)
..++ .|.+|+..++........+.. +...+.+++++|++.. |+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8766 899999887654332211222 4566889999995553 44467788999999887764332 2222222
Q ss_pred E--EEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCC---------------CCCeeEEEECcCCCEEEEEecC
Q 001163 510 V--YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP---------------GHSSTMMAYSADGARLFSCGTN 572 (1134)
Q Consensus 510 v--~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~~~ 572 (1134)
- ..++|++. ++.++++-..++.|+.|+.+.. ...+... -.....++++++|+++++-.
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 27888653 3467777778899999987643 2222111 12467899999999555542
Q ss_pred CCCCeEEEEEeCCCCeeEEEecCCC--------------CCceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001163 573 KEGESYLVEWNESEGAVKRTYHGLG--------------KRSVGVVQFDTTKNRFLAAGDEFMIKFWDM 627 (1134)
Q Consensus 573 ~~~~~~i~~wd~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 627 (1134)
.+...|+.||+.++.... +.++. -.....+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v~~-~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYVST-VAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEEEE-EEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEEEE-EeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 035579999987776543 33320 124778999999777777778888888765
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.23 E-value=4e-09 Score=119.69 Aligned_cols=239 Identities=8% Similarity=0.062 Sum_probs=161.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCC--eEEEEECCC
Q 001163 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVT 496 (1134)
Q Consensus 419 ~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~~~ 496 (1134)
.....|+|+++++++++...++.|++||..++.... . ... ..... ++|+++++ .|+.++.++ .|.+||...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~-~--~~~-~~~~~-ia~~~~g~--~l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT-V--HPG-FKGGK-PAVTKDKQ--RVYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE-E--EET-CCBCB-CEECTTSS--EEEEEBSSTTCEEEEEEGGG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE-e--ecc-CCCCc-eeEecCCC--cEEEEecCCCceEEEEEcCC
Confidence 478899999999988888888999999999876433 1 222 22233 99999999 677777655 899999876
Q ss_pred CceeEEe----cCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceee----ecCCCCCe--eEEEECcCCCEE
Q 001163 497 GTKQYIF----EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD----YDAPGHSS--TMMAYSADGARL 566 (1134)
Q Consensus 497 ~~~~~~~----~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~----~~~~~~~v--~~~~~s~~~~~l 566 (1134)
+.....+ ......+.++++++. ++ .|+.+..++.|+.||......... ........ ..++|+|++..|
T Consensus 204 ~~~~~~~g~~~~~~~~~p~~iav~p~-~g-~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 204 GWAPTRIGQLGSTFSGKIGAVALDET-EE-WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF 281 (409)
T ss_dssp TTCEEEEEECCTTSCSCCCBCEECTT-SS-EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred CceeEEeeeccchhcCCcEEEEEeCC-CC-eEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence 6554444 224455677787653 33 454577788999999886653332 11111222 389999975566
Q ss_pred EEEecCCCCCeEEEEEeCCCCeeEEEecCCC--------------CCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCc
Q 001163 567 FSCGTNKEGESYLVEWNESEGAVKRTYHGLG--------------KRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVN 631 (1134)
Q Consensus 567 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 631 (1134)
+.+.. ....|+.|+.... +..+.+.. -.....++++++++.+++-. .++.|+.|+..++.
T Consensus 282 yv~d~---~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 282 YMSDQ---NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp EEEET---TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred EEEeC---CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 55532 2456999987643 23333321 12467899999999777777 88999999987776
Q ss_pred eeEEEecCC------------CCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163 632 LLASIDADG------------GLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (1134)
Q Consensus 632 ~~~~~~~~~------------~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 671 (1134)
........+ .......++++++|.++++-..++.|+.+++
T Consensus 357 v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 357 VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 443332100 1234678999999888888888888887764
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.23 E-value=2e-09 Score=117.52 Aligned_cols=230 Identities=13% Similarity=0.072 Sum_probs=155.8
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 434 (1134)
......+..|+|+|++|++++..++.|..|+. +++... +..+...+..++++++|++++
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~dG~l~v 101 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQQRLVH 101 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTTSCEEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCCCCEEE
Confidence 55667899999999988899999999999998 443211 233556799999999999877
Q ss_pred EEeCCCEEEEEEccCCceeeeeeeeecC-CCCEEEEEEecCCCceEEEE----EeC-------------CCeEEEEECCC
Q 001163 435 VAYSKHIVHLYTYHGGDELRNHLEIEAH-VGSVNDLAFSYPNKQLSVVT----CGE-------------DRVIKVWDAVT 496 (1134)
Q Consensus 435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h-~~~V~~v~~s~~~~~~~l~s----~s~-------------d~~i~iwd~~~ 496 (1134)
+...++.|.+|+.. ++.........+. ...+..+++.++|+ +++| |.. .+.|..+|..+
T Consensus 102 ~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 102 CEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp EETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred EECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 77677889999986 4422111111111 23467899999998 6665 332 25688888777
Q ss_pred CceeEEecCCCcCEEEEeccccCCccEEEEecCC------CcEEEEecCCCCc---eeeecCCCCCeeEEEECcCCCEEE
Q 001163 497 GTKQYIFEGHESPVYSICPHHKENIQFIFSTATD------GKIKAWLYDNLGS---RVDYDAPGHSSTMMAYSADGARLF 567 (1134)
Q Consensus 497 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~ 567 (1134)
++..... .......++|++ ++..|+.+... +.|.+|++..... .............++++++|+..+
T Consensus 179 g~~~~~~--~~~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv 254 (305)
T 3dr2_A 179 SPLQRMA--DLDHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS 254 (305)
T ss_dssp CCCEEEE--EESSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE
T ss_pred CcEEEEe--cCCCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE
Confidence 7654433 334567788855 45666666554 7899999875431 111122233456789999999554
Q ss_pred EEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCe
Q 001163 568 SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM 621 (1134)
Q Consensus 568 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 621 (1134)
+. .+ .|.+|+. +++.+..+.... .+..++|+++++.|+.++.++.
T Consensus 255 ~~-~~-----gv~~~~~-~g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 255 SS-GT-----GVCVFDS-DGQLLGHIPTPG--TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp CC-SS-----EEEEECT-TSCEEEEEECSS--CCCEEEECTTSCEEEEEETTEE
T ss_pred ec-CC-----cEEEECC-CCCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCeE
Confidence 43 21 3999998 577777776554 4778999999988888887543
No 220
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.22 E-value=2.5e-05 Score=92.90 Aligned_cols=531 Identities=10% Similarity=-0.014 Sum_probs=284.9
Q ss_pred EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEE
Q 001163 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 511 (1134)
Q Consensus 432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~ 511 (1134)
+|+.+ ....|+..|+.+..... ...+. .-..+..++|.+.+.. ++++-..++.|..+++........+........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~-~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPLT-GVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCCC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEcC-CCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 44444 45678999998654221 11222 2345789999997774 456666788999999765443333332223456
Q ss_pred EEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEE
Q 001163 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR 591 (1134)
Q Consensus 512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 591 (1134)
.+++.+.. +++.++-...+.|.+.+++.................+++.|....|+..-.. ....|...++.......
T Consensus 84 GlAvD~~~-~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g--~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWLG-KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG--GKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETTT-TEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEE
T ss_pred eEEEEeCC-CEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC--CCCEEEEEeCCCCceEE
Confidence 67775433 3566777777899999987554433333334467899999976666665321 14468888876544333
Q ss_pred EecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEE
Q 001163 592 TYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA 670 (1134)
Q Consensus 592 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~ 670 (1134)
.... -.....+++++++..|+.+. ..+.|...|+..... ..+... ......+++.. +.++++-...+.|...|
T Consensus 161 l~~~--~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 161 LVPN--VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EECS--CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EECC--CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 3332 23678899999888887776 677899999976544 333322 22345677764 44555555578888888
Q ss_pred ccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccc
Q 001163 671 NADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEK 750 (1134)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 750 (1134)
..++.. ...+.........+ . .+.+... + ..... .... .++. .
T Consensus 235 k~tg~~-~~~l~~~~~~p~~i-----------~-------v~~~~~q----~-----~~n~C---~~~n----g~C~--~ 277 (628)
T 4a0p_A 235 KTSGQN-RTIIQGHLDYVMDI-----------L-------VFHSSRQ----S-----GWNEC---ASSN----GHCS--H 277 (628)
T ss_dssp TTTCCS-CEEEECSCCSCCEE-----------E-------EECGGGS----C-----CCCTT---TTTG----GGCS--S
T ss_pred CCCCCc-eEEEecCCCCccee-----------e-------eeeeccc----c-----cceEe---ccCC----CCcc--h
Confidence 766632 22232211100000 0 0000000 0 00000 0000 0000 0
Q ss_pred cceeeecccCCcccee---ccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCC
Q 001163 751 SRIWKLTEITEPSQCR---SLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQP 827 (1134)
Q Consensus 751 i~iw~~~~~~~~~~~~---~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~ 827 (1134)
+.+-.... ...|. -+.+ .....+|. +...+++.+.. ..|+-..+..
T Consensus 278 ~C~~~~~~---~~~C~C~~g~~l----~~d~~~C~---~~~~~Ll~s~~-~~i~~i~l~~-------------------- 326 (628)
T 4a0p_A 278 LCLAVPVG---GFVCGCPAHYSL----NADNRTCS---APTTFLLFSQK-SAINRMVIDE-------------------- 326 (628)
T ss_dssp EEEEETTT---EEEEECSTTCEE----CTTSSCEE---CCSSEEEEEET-TEEEEECCCT--------------------
T ss_pred hhhcCCCC---CeeEEcCCCcEe----cccCCcCc---cccceeeeecc-ceEEEEeccc--------------------
Confidence 00000000 00000 0000 00011111 11223333322 2333222211
Q ss_pred CCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee--CCeEEEEEccCCeEEEEecC------CCCCeEEEEEcCCCCcE
Q 001163 828 PSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMP------PPPAATFLAFHPQDNNI 899 (1134)
Q Consensus 828 ~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~------~~~~v~~l~~sp~~~~~ 899 (1134)
.........+. .-..+.+++|++.+..|..+. .+.|+.++.........+.. ....+..+|+...++.+
T Consensus 327 ~~~~~~~l~~~---~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nL 403 (628)
T 4a0p_A 327 QQSPDIILPIH---SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYI 403 (628)
T ss_dssp TCCCCEECCCT---TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEE
T ss_pred ccCceEEEEeh---hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeE
Confidence 00000011111 234578899999877777776 57899888765433333332 23468899999844556
Q ss_pred EEEEeCCCcEEEEEcccceEEEec-cCccCceEEEEEee-CCCEEEEEeCCC--cEEEEECCCCccccceeeeecCCCCC
Q 001163 900 IAIGMEDSSIQIYNVRVDEVKTKL-KGHQKRITGLAFSN-TLNVLVSSGADS--QLCVWSTDGWEKQASKFLTIPNGRTA 975 (1134)
Q Consensus 900 la~g~~dg~i~iwd~~~~~~~~~l-~~h~~~V~~l~~s~-d~~~l~s~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~ 975 (1134)
..+-+..+.|.+.++. |+....+ ........+|++.| .|.+.++-.... .|...+++.... ..+ .... .
T Consensus 404 Y~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~---~~l-~~~~-l- 476 (628)
T 4a0p_A 404 YWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER---EVL-FFSG-L- 476 (628)
T ss_dssp EEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC---EEE-ECSS-C-
T ss_pred EEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc---EEE-Eecc-C-
Confidence 6666677899999986 4444333 33446689999999 555555533332 566666665321 111 1111 1
Q ss_pred CCCCceEEEEcCCCCEEEEE--eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCc
Q 001163 976 SALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLR 1053 (1134)
Q Consensus 976 ~~~~v~~l~fs~dg~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~ 1053 (1134)
.....++++++++.|..+ ..+.|..++++ |.....+.. .......++++.. +.+..+=...+.|...|-.+|+
T Consensus 477 --~~P~gla~D~~~~~LYw~D~~~~~I~~~~~d-G~~r~~~~~-~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~ 551 (628)
T 4a0p_A 477 --SKPIALALDSRLGKLFWADSDLRRIESSDLS-GANRIVLED-SNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGRE 551 (628)
T ss_dssp --SCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEC-SSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSS
T ss_pred --CCccEEEEeCCCCEEEEEeCCCCEEEEEeCC-CCceEEEEc-CCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCC
Confidence 346889999998888875 34789999985 444444432 2234567777754 4444444455788888888776
Q ss_pred ceeec
Q 001163 1054 LRCRI 1058 (1134)
Q Consensus 1054 ~~~~~ 1058 (1134)
....+
T Consensus 552 ~~~~i 556 (628)
T 4a0p_A 552 GRTKV 556 (628)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 54433
No 221
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.22 E-value=2.3e-10 Score=127.27 Aligned_cols=273 Identities=9% Similarity=0.010 Sum_probs=174.7
Q ss_pred ccEEEEEEecCCceeeeecc--CCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163 777 MRVSRLIYTNSGLAILALAS--NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 854 (1134)
Q Consensus 777 ~~i~~l~~spdg~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d 854 (1134)
..+..++++++|+.+++... ++.++||.+.. ++.. -|- +.. .. ...+-..+..++++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~------g~~~------~~p--~~~---~~--~~~~~~~p~gv~~d~~ 77 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ------DGLI------PFP--PQS---GN--AIITFDTVLGIKSDGN 77 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET------TEEE------ESC--CCC---SS--CCCCCSCEEEEEECSS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC------CCee------cCC--Ccc---cC--cccceeEeeEEEEcCC
Confidence 46889999999998887542 34356665541 1111 000 000 00 1125678899999999
Q ss_pred CCeEEEee------CCeEEEEEccCCeEEEEecCC------CCCeEEEEEcCCCCcEEEEEe---CCCcEEEEEcccceE
Q 001163 855 DSYVMSAS------GGKISLFNMMTFKTMTTFMPP------PPAATFLAFHPQDNNIIAIGM---EDSSIQIYNVRVDEV 919 (1134)
Q Consensus 855 g~~la~~s------dg~i~lwd~~~~~~~~~~~~~------~~~v~~l~~sp~~~~~la~g~---~dg~i~iwd~~~~~~ 919 (1134)
|+++++-. +++|.+||+.+++.+..+..+ ...+..++++++++..+++.. .++.|.+||+.+++.
T Consensus 78 g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~ 157 (343)
T 2qe8_A 78 GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA 157 (343)
T ss_dssp SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence 98766543 378999999999877776532 234689999984455556555 678999999999988
Q ss_pred EEeccCccCceE-EEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEe-e
Q 001163 920 KTKLKGHQKRIT-GLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVH-E 997 (1134)
Q Consensus 920 ~~~l~~h~~~V~-~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~-d 997 (1134)
...+.+|..... ...++++|..+.+.+.|+.++.|.. .+..++|+|||+.|+++. .
T Consensus 158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~~ 215 (343)
T 2qe8_A 158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPMH 215 (343)
T ss_dssp EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEESS
T ss_pred EEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeCC
Confidence 777766543211 1456678888888888887766531 256799999999888853 2
Q ss_pred -ceEEEEeCCC---c-----ccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCC
Q 001163 998 -TQIAIYEAPK---L-----ECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNP 1068 (1134)
Q Consensus 998 -~~i~iwd~~~---~-----~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h 1068 (1134)
+.+..++... + +....+...++......++++++|.++++...++.|.+||..+++........
T Consensus 216 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~------- 288 (343)
T 2qe8_A 216 STSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE------- 288 (343)
T ss_dssp CSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-------
T ss_pred CCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-------
Confidence 3555554321 1 11111111122335667999999999999999999999998667643222211
Q ss_pred CCCceeEEEEecCCCCCEEEEEecCCcEEEE
Q 001163 1069 SLRVYPLVIAGNPTDPNQFALGLTDGGVYII 1099 (1134)
Q Consensus 1069 ~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW 1099 (1134)
....+-.++|.+ ++.++++.+..+.+.+|
T Consensus 289 -~~~~p~~va~~~-~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 289 -KLSWTDSFNFGS-DGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp -GGSCEEEEEECT-TSCEEEEECCGGGSGGG
T ss_pred -ceecCCeeEECC-CCcEEEEeCcccccccc
Confidence 112345567878 57888887766555444
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.21 E-value=6.1e-10 Score=136.51 Aligned_cols=245 Identities=10% Similarity=0.122 Sum_probs=160.5
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEe-----CCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCC--
Q 001163 415 SDYTASVNRVMWSPDGTLFGVAY-----SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR-- 487 (1134)
Q Consensus 415 ~~h~~~V~~l~~spd~~~las~s-----~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~-- 487 (1134)
.+|...+..++|||||++||.+. .+..|++||+.+|+.+.. .+.+ .....++|+ ||+ .|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~--~k~~~~~Ws-Dg~--~l~y~~~~~~~ 197 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD--VKFSGISWL-GNE--GFFYSSYDKPD 197 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE--EESCCCEEE-TTT--EEEEEESSCCC
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC--ceeccEEEe-CCC--EEEEEEecCcc
Confidence 34667899999999999999543 335799999999985432 1221 113578999 999 566666653
Q ss_pred -----------eEEEEECCCCc----eeEEecC-CCcCEEEEeccccCCccEEEEec----CCCcEEEEecCCCC-ceee
Q 001163 488 -----------VIKVWDAVTGT----KQYIFEG-HESPVYSICPHHKENIQFIFSTA----TDGKIKAWLYDNLG-SRVD 546 (1134)
Q Consensus 488 -----------~i~iwd~~~~~----~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s----~dg~i~vwd~~~~~-~~~~ 546 (1134)
.|++|++.++. ++..... |...+.++.++ +||++|+... .++.|+++|+.... ....
T Consensus 198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S--pDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~ 275 (693)
T 3iuj_A 198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT--EDDRFLLISAANSTSGNRLYVKDLSQENAPLLT 275 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC--TTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc--CCCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence 49999988764 3333333 44556777775 4556664432 23589999987664 3334
Q ss_pred ecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCee--EEEecCCCCCceEEEEEcCCCCEEEEEe-CCC--e
Q 001163 547 YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV--KRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEF--M 621 (1134)
Q Consensus 547 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg--~ 621 (1134)
+..+....... ++++|..|+..+........|..+|+.++.. ...+..+....+ .|+++++.|+... .++ .
T Consensus 276 l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 276 VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDATAR 351 (693)
T ss_dssp EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETTEEE
T ss_pred EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECCeeE
Confidence 44444444444 7788887776665433356799999988754 234555544233 8889999888776 444 6
Q ss_pred EEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECC----CcEEEEEccCC
Q 001163 622 IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND----NGIKILANADG 674 (1134)
Q Consensus 622 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d----g~i~iw~~~~~ 674 (1134)
|++|++..+ ....+... ....+..+.+++++..++....+ +.+..||+.++
T Consensus 352 l~~~d~~g~-~~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 352 VEQFDYEGK-RVREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEEECTTSC-EEEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEEECCCC-eeEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 899998754 44555432 23345666778888766655544 78999998776
No 223
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.21 E-value=3.6e-10 Score=124.50 Aligned_cols=242 Identities=9% Similarity=-0.005 Sum_probs=156.3
Q ss_pred EEEEecCCceeeeec----------cCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccC-CCCCC---CCCCe
Q 001163 781 RLIYTNSGLAILALA----------SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTND-ISDTN---PEDAV 846 (1134)
Q Consensus 781 ~l~~spdg~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~---h~~~v 846 (1134)
.++++|||++++++. .++.|.+||.. +++..... +.+.. .....
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~----------------------T~~vv~~I~v~~~~~~~~g~~P 126 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV----------------------TFLPIADIELPDAPRFSVGPRV 126 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT----------------------TCCEEEEEEETTSCSCCBSCCT
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC----------------------CCCEEEEEECCCccccccCCCc
Confidence 689999999998886 36778887544 44333221 11000 01235
Q ss_pred eEEEEcCCCCeEEEee---CCeEEE--EEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc-----
Q 001163 847 PCFALSKNDSYVMSAS---GGKISL--FNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV----- 916 (1134)
Q Consensus 847 ~~v~~s~dg~~la~~s---dg~i~l--wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~----- 916 (1134)
..++++|||++++++. ++.+.+ +|+.+ +.++.... + ..+.|++.+.+++.+.||.+.+.++.+
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~--~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS--C--FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS--C--CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC--c--eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 6899999999999886 356888 99877 44443211 1 223343455666777889888889886
Q ss_pred ceEEEe----ccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeec------CCCCCCCCCceEEEEc
Q 001163 917 DEVKTK----LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIP------NGRTASALADTRVQFH 986 (1134)
Q Consensus 917 ~~~~~~----l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~l~fs 986 (1134)
++.... +.-...+. + ++++..++..+. +.|.+.|+.+........+... .+..+ .....++|+
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~v~~s 272 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS--AGFQMVAKL 272 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE--CSSSCEEEE
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc--CcceeeEEc
Confidence 543321 11122333 3 667777666666 8999999875331111111111 00000 122337899
Q ss_pred CCCCEEEEE-e---------eceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCE-EEEEe-cCCcEEEeecCCCcc
Q 001163 987 LDQTHLLAV-H---------ETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQS-IYVAF-EEGSVGVLTASTLRL 1054 (1134)
Q Consensus 987 ~dg~~l~~~-~---------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~-l~s~s-~Dg~i~vwd~~~~~~ 1054 (1134)
||++.++++ . ++.+.++|+.+++.+..+... .....++|++||++ +++.. .+++|.++|+.+++.
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence 999998874 3 236779999999999888742 36889999999985 55555 489999999999999
Q ss_pred eeecCCC
Q 001163 1055 RCRINPT 1061 (1134)
Q Consensus 1055 ~~~~~~~ 1061 (1134)
+.++...
T Consensus 350 v~~I~vg 356 (368)
T 1mda_H 350 QSSVELD 356 (368)
T ss_dssp EEECCCC
T ss_pred EEEEECC
Confidence 9887733
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.20 E-value=6.9e-09 Score=125.69 Aligned_cols=193 Identities=13% Similarity=0.100 Sum_probs=129.5
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEecCCCcC----------E-EEEeccccCCccEEEEecCCCcEEEEecCCCCceeee
Q 001163 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESP----------V-YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY 547 (1134)
Q Consensus 479 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~----------v-~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 547 (1134)
.++.++.++.|.-+|..+|+.+.++...... + ..+++ .+..|+.++.|+.|..+|..+++....+
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 4677777899999999999999887643210 0 11222 2257888899999999999998888776
Q ss_pred cCC-C----CCeeEEEECcCCCEEEEEecCCC--CCeEEEEEeCCCCeeEEEecCCCCC---------------------
Q 001163 548 DAP-G----HSSTMMAYSADGARLFSCGTNKE--GESYLVEWNESEGAVKRTYHGLGKR--------------------- 599 (1134)
Q Consensus 548 ~~~-~----~~v~~~~~s~~~~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~~--------------------- 599 (1134)
... . ..+.+.-.. .+..+++++...+ .++.|+.+|..+|+.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 654 2 112111111 2345555443211 2467999999999999877653221
Q ss_pred ----------ceEEEEEcCCCCEEEEEeCCC-------------------eEEEEEcCCCceeEEEecCCCC-------C
Q 001163 600 ----------SVGVVQFDTTKNRFLAAGDEF-------------------MIKFWDMDNVNLLASIDADGGL-------Q 643 (1134)
Q Consensus 600 ----------~v~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~ 643 (1134)
....+++++++..++.+..++ .|..+|..+|+.+-.++...+. .
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 313 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence 012468889999999887664 5999999999998887653221 1
Q ss_pred CcceEEEcCCC---cEEEEEECCCcEEEEEccCCce
Q 001163 644 ASPCIRFNKEG---ILLAVSTNDNGIKILANADGIR 676 (1134)
Q Consensus 644 ~v~~v~~sp~~---~~l~~~~~dg~i~iw~~~~~~~ 676 (1134)
....+....+| ..++.++.+|.++++|..+++.
T Consensus 314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~ 349 (677)
T 1kb0_A 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF 349 (677)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 12222333467 6889999999999999999843
No 225
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.19 E-value=3.7e-10 Score=124.49 Aligned_cols=183 Identities=13% Similarity=0.119 Sum_probs=133.8
Q ss_pred CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEe
Q 001163 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 437 (1134)
Q Consensus 358 ~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s 437 (1134)
.++.+++++... ++++|+.++ +.+|+++........ .... ++......+.. |++++| |+++|+++
T Consensus 39 ~~nlLais~~~g-ll~a~~~~~-l~v~~~~~l~~~~~~-------~~~~--~~~~~~~~lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGSK-AVVGELQLLRDHITS-------DSTP--LTFKWEKEIPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETTE-EEEEEHHHHHHHHHS-------SSCC--CCCSEEEECTT-EEEEEE--ETTEEEEE-
T ss_pred cccEEEEcCCCC-EEEEeCCCE-EEEEEhhHhhhhhcc-------cccc--ccceEEeeCCC-eeEEEE--CCCEEEEE-
Confidence 688999999998 567888775 556998654411000 0000 11111234666 999999 99999999
Q ss_pred CCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccc
Q 001163 438 SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH 517 (1134)
Q Consensus 438 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 517 (1134)
.++.|++||+.+..... .+..|...+.++.+.+.. +++++.||.|.+||+.++.... +...|.|++|++
T Consensus 104 ~~~~l~v~dv~sl~~~~---~~~~~~~~v~~i~~~~p~----~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp 172 (388)
T 1xip_A 104 TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNNT----LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN 172 (388)
T ss_dssp ESSEEEEEESSSTTCEE---EEEECSSCEEEEEECSSE----EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred cCCcEEEEEchhhhccC---ccceeecceeeEEecCCC----EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence 88999999998765333 456688889988877542 7888999999999999887654 456899999976
Q ss_pred cCCccEEEEecCCCcEEEEecCCCCc--eeee------c---CCCCCeeEEEECcCCCEEEEEe
Q 001163 518 KENIQFIFSTATDGKIKAWLYDNLGS--RVDY------D---APGHSSTMMAYSADGARLFSCG 570 (1134)
Q Consensus 518 ~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~------~---~~~~~v~~~~~s~~~~~l~~~~ 570 (1134)
.+ ++.|..||.+++|+.+.... ...+ . .+...|.++.|.+++.++++-.
T Consensus 173 kG----~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 173 SQ----LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SE----EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred Cc----eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 44 67899999999998876553 3333 2 2567899999999998888654
No 226
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.19 E-value=1.7e-10 Score=127.11 Aligned_cols=173 Identities=13% Similarity=0.096 Sum_probs=133.7
Q ss_pred CCeeEEEEcCCCCeEEEeeCCeEEEEEccCCe-----------EEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 001163 844 DAVPCFALSKNDSYVMSASGGKISLFNMMTFK-----------TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIY 912 (1134)
Q Consensus 844 ~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~-----------~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iw 912 (1134)
..+..+++++...++++|+...+.+|++.+.+ ...... +.. |+.++| ++.+|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 46889999999999999997788889976443 112232 455 999999 56788888 88999999
Q ss_pred EcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEE
Q 001163 913 NVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHL 992 (1134)
Q Consensus 913 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l 992 (1134)
|+.+.........|...+.++.+.+. .+++++.||.|.+||++.+... .. ...|++++|||+| ..
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~-----~~-------~~~Vs~v~WSpkG-~~ 176 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK-----QL-------AQNVTSFDVTNSQ-LA 176 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE-----EE-------EESEEEEEECSSE-EE
T ss_pred EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc-----cc-------cCCceEEEEcCCc-eE
Confidence 99876555566677888888877654 3888999999999999976532 11 1359999999999 44
Q ss_pred EEEeeceEEEEeCCCccc--ceeecc-------CCCccCEEEEEEccCCCEEEE
Q 001163 993 LAVHETQIAIYEAPKLEC--LKQFVP-------REASGPITHATYSCDSQSIYV 1037 (1134)
Q Consensus 993 ~~~~d~~i~iwd~~~~~~--~~~~~~-------~~h~~~v~~~~~s~dg~~l~s 1037 (1134)
+...||++++|+...+++ .+.+.. .+|...|.+++|.+++.+|++
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 446899999999887775 444421 146789999999999999886
No 227
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.16 E-value=1.2e-08 Score=112.25 Aligned_cols=223 Identities=14% Similarity=0.036 Sum_probs=148.1
Q ss_pred eeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeC
Q 001163 359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS 438 (1134)
Q Consensus 359 V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~ 438 (1134)
..+.+|+|++..+++++..++.|..||..+++... | .....|.+++|+|+|+++++. .
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~------~---------------~~~~~v~~i~~~~dg~l~v~~-~ 108 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV------H---------------ALPFMGSALAKISDSKQLIAS-D 108 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE------E---------------ECSSCEEEEEEEETTEEEEEE-T
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE------E---------------ECCCcceEEEEeCCCeEEEEE-C
Confidence 46889999987788888889999999998875321 1 123579999999999988765 4
Q ss_pred CCEEEEEEccCCceeeeeeeee-c-CCCCEEEEEEecCCCceEEEEEeC------CCeEEEEECCCCceeEEecCCCcCE
Q 001163 439 KHIVHLYTYHGGDELRNHLEIE-A-HVGSVNDLAFSYPNKQLSVVTCGE------DRVIKVWDAVTGTKQYIFEGHESPV 510 (1134)
Q Consensus 439 dg~v~iwd~~~~~~~~~~~~l~-~-h~~~V~~v~~s~~~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~~h~~~v 510 (1134)
+ .|.+||..+++... ..... + ....+..++++|+|+ ++++... .+.|..+| +++... +..+....
T Consensus 109 ~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~ 181 (326)
T 2ghs_A 109 D-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIP 181 (326)
T ss_dssp T-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSE
T ss_pred C-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCccc
Confidence 4 49999998876422 21111 1 124689999999998 4554432 24555566 554433 32233456
Q ss_pred EEEeccccCCccEE-EEecCCCcEEEEecC--CC-Cc---ee--eecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEE
Q 001163 511 YSICPHHKENIQFI-FSTATDGKIKAWLYD--NL-GS---RV--DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581 (1134)
Q Consensus 511 ~~~~~~~~~~~~~l-~s~s~dg~i~vwd~~--~~-~~---~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 581 (1134)
..++|++ +++.+ ++.+.++.|.+|+++ ++ .. .. .+.........++++++|++.++... ...|..
T Consensus 182 ~~i~~s~--dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~~ 255 (326)
T 2ghs_A 182 NSICFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDR 255 (326)
T ss_dssp EEEEECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEE
T ss_pred CCeEEcC--CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEEE
Confidence 7788854 44555 555667899999986 33 21 11 11222345678999999987766532 235999
Q ss_pred EeCCCCeeEEEecCCCCCceEEEEEc-CCCCEEEEEeC
Q 001163 582 WNESEGAVKRTYHGLGKRSVGVVQFD-TTKNRFLAAGD 618 (1134)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~ 618 (1134)
||. +++.+..+..... .+.+++|+ ++++.|++++.
T Consensus 256 ~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 256 YDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp ECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEEB
T ss_pred ECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEec
Confidence 998 6777777766544 68899998 88877766653
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.16 E-value=5.1e-09 Score=127.12 Aligned_cols=79 Identities=11% Similarity=0.052 Sum_probs=58.9
Q ss_pred CeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCc-eEEEEEeeCCCEE
Q 001163 864 GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKR-ITGLAFSNTLNVL 942 (1134)
Q Consensus 864 g~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l 942 (1134)
|.|+.||+.+++.+..+..+.. ...-.++. .+.++++|+.||.++.||..+|+.+.+++...+. ..-+.|+.+|+..
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred eeEEEEECCCCCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence 6799999999999988764432 23334455 5668999999999999999999999888754332 2457788888754
Q ss_pred EE
Q 001163 943 VS 944 (1134)
Q Consensus 943 ~s 944 (1134)
+.
T Consensus 533 v~ 534 (689)
T 1yiq_A 533 VT 534 (689)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.16 E-value=5.4e-09 Score=126.63 Aligned_cols=203 Identities=11% Similarity=0.095 Sum_probs=135.8
Q ss_pred EEEEEcCCCCcEEEEEeCCC-------------------cEEEEEcccceEEEeccC--cc-------CceEEEEEeeCC
Q 001163 888 TFLAFHPQDNNIIAIGMEDS-------------------SIQIYNVRVDEVKTKLKG--HQ-------KRITGLAFSNTL 939 (1134)
Q Consensus 888 ~~l~~sp~~~~~la~g~~dg-------------------~i~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~ 939 (1134)
..++++| ++.+|+.++.++ .|..+|..+|+.+..++. |. ....-+....+|
T Consensus 246 ~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG 324 (677)
T 1kb0_A 246 DSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG 324 (677)
T ss_dssp SCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred cceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence 3578888 677888877664 499999999998877653 31 122223444577
Q ss_pred ---CEEEEEeCCCcEEEEECCCCccccceeeee-c-------CCC-------------------CCCCCCceEEEEcCCC
Q 001163 940 ---NVLVSSGADSQLCVWSTDGWEKQASKFLTI-P-------NGR-------------------TASALADTRVQFHLDQ 989 (1134)
Q Consensus 940 ---~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~-~-------~~~-------------------~~~~~~v~~l~fs~dg 989 (1134)
..++.++.+|.++++|..+++..-...... . .+. ......-..++|+|++
T Consensus 325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~ 404 (677)
T 1kb0_A 325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT 404 (677)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT
T ss_pred cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC
Confidence 689999999999999999987532111000 0 000 0000011357899998
Q ss_pred CEEEEE-ee-------------------------------------------ceEEEEeCCCcccceeeccCCCccCEEE
Q 001163 990 THLLAV-HE-------------------------------------------TQIAIYEAPKLECLKQFVPREASGPITH 1025 (1134)
Q Consensus 990 ~~l~~~-~d-------------------------------------------~~i~iwd~~~~~~~~~~~~~~h~~~v~~ 1025 (1134)
.++++. .+ +.|..||+.+++.+..+.. ...+.+
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~ 481 (677)
T 1kb0_A 405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---VSPWNG 481 (677)
T ss_dssp TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---SSSCCC
T ss_pred CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC---CCCCcC
Confidence 888773 32 7899999999998777652 334455
Q ss_pred EEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCC-EEEEEec------------
Q 001163 1026 ATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPN-QFALGLT------------ 1092 (1134)
Q Consensus 1026 ~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~-~l~s~~~------------ 1092 (1134)
..++.+|.++++++.||.+++||+.+|+.+..+.... + ..-.++ .|.+ +++ ++++.+.
T Consensus 482 g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~----~--~~~~p~--~y~~-~G~~~v~~~~G~~~~~~~~~~~~ 552 (677)
T 1kb0_A 482 GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT----G--VVAAPS--TYMV-DGRQYVSVAVGWGGVYGLAARAT 552 (677)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS----C--CCSCCE--EEEE-TTEEEEEEEECCCHHHHHHCCSC
T ss_pred cceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC----C--cccCCE--EEEe-CCEEEEEEeccCCcccccccccc
Confidence 6677889999999999999999999999998876332 1 112234 4555 454 5554333
Q ss_pred ----CCcEEEEeCCC
Q 001163 1093 ----DGGVYIIEPLE 1103 (1134)
Q Consensus 1093 ----Dg~v~vW~~~~ 1103 (1134)
.+.+..|.+..
T Consensus 553 ~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 553 ERQGPGTVYTFVVGG 567 (677)
T ss_dssp SCCCCCEEEEEEETC
T ss_pred ccCCCCeEEEEeccc
Confidence 46889998874
No 230
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.14 E-value=2.7e-09 Score=117.46 Aligned_cols=268 Identities=9% Similarity=-0.028 Sum_probs=171.3
Q ss_pred eEEEEEeCCC----cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEe--------
Q 001163 370 ILLVVGTNMG----DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY-------- 437 (1134)
Q Consensus 370 ~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s-------- 437 (1134)
+++++...++ +|.++|..+++.+.+.. .+. .+ .+++|||++++.++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~------------------vG~-~P--~i~~spDg~~lyVan~~~~r~~~ 91 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSL------------------GAF-LS--LAVAGHSGSDFALASTSFARSAK 91 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------ECT-TC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEe------------------CCC-CC--ceEECCCCCEEEEEccccccccc
Confidence 4555555555 88899999998876421 222 34 799999999999886
Q ss_pred --CCCEEEEEEccCCceeeeeeeeec-C----CCCEEEEEEecCCCceEEEEEeC--CCeEEE--EECCCCceeEEecCC
Q 001163 438 --SKHIVHLYTYHGGDELRNHLEIEA-H----VGSVNDLAFSYPNKQLSVVTCGE--DRVIKV--WDAVTGTKQYIFEGH 506 (1134)
Q Consensus 438 --~dg~v~iwd~~~~~~~~~~~~l~~-h----~~~V~~v~~s~~~~~~~l~s~s~--d~~i~i--wd~~~~~~~~~~~~h 506 (1134)
.++.|.+||..+++.+.... +.+ . ......++|+|||+. ++.+.. +..+.+ +|+.+ +.++.--
T Consensus 92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v~ 165 (368)
T 1mda_H 92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKSA 165 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence 36889999999998776432 220 0 123567999999995 555443 467888 99877 4444311
Q ss_pred CcCEEEEeccccCCccEEEEecCCCcEEEEecCC----CCcee-----eecCCCCCeeEEEECcCCCEEEEEecCCCCCe
Q 001163 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN----LGSRV-----DYDAPGHSSTMMAYSADGARLFSCGTNKEGES 577 (1134)
Q Consensus 507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~----~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 577 (1134)
+. ..+.+.+. ..+++.+.|+.+.+.|+.. ..... .+.....+. . ++++..++..+. +
T Consensus 166 -~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-----~ 231 (368)
T 1mda_H 166 -SC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-----S 231 (368)
T ss_dssp -SC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----S
T ss_pred -Cc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----C
Confidence 11 12233333 3556677788888888875 11111 011111232 3 566666655543 2
Q ss_pred EEEEEeCCCCe--eEEEecCCC------C---CceEEEEEcCCCCEEEEEeC---------CCeEEEEEcCCCceeEEEe
Q 001163 578 YLVEWNESEGA--VKRTYHGLG------K---RSVGVVQFDTTKNRFLAAGD---------EFMIKFWDMDNVNLLASID 637 (1134)
Q Consensus 578 ~i~~wd~~~~~--~~~~~~~~~------~---~~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~ 637 (1134)
.+.+.|..++. .+..+.... . .....++++|++++++.+.. ++.+.++|+.+.+.+..+.
T Consensus 232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~ 311 (368)
T 1mda_H 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311 (368)
T ss_dssp CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence 48888886542 232222110 0 01122689999998887643 2356699999999998886
Q ss_pred cCCCCCCcceEEEcCCCc-EEEEEE-CCCcEEEEEccCCceeEEEec
Q 001163 638 ADGGLQASPCIRFNKEGI-LLAVST-NDNGIKILANADGIRLLRTVE 682 (1134)
Q Consensus 638 ~~~~~~~v~~v~~sp~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 682 (1134)
... ....++|+|||+ ++++.. .++.|.++|+.++ +.++.+.
T Consensus 312 vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~ 354 (368)
T 1mda_H 312 NGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp EEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred CCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEE
Confidence 532 467999999997 556666 5999999999998 5666664
No 231
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.14 E-value=2.2e-05 Score=93.41 Aligned_cols=524 Identities=9% Similarity=0.030 Sum_probs=265.6
Q ss_pred CCEEEEEEccCCc-eeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce-eEEecCCCcCEEEEecc
Q 001163 439 KHIVHLYTYHGGD-ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK-QYIFEGHESPVYSICPH 516 (1134)
Q Consensus 439 dg~v~iwd~~~~~-~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~ 516 (1134)
...|+..|+.... ... .+...-.....++|++.+.. ++++-...+.|..+++..... ...+...-.....+++.
T Consensus 17 ~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD 92 (619)
T 3s94_A 17 RRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 92 (619)
T ss_dssp SSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEE
T ss_pred cccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEE
Confidence 4557777776542 111 12223345789999997774 445555577899999765532 22333333567888886
Q ss_pred ccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCC
Q 001163 517 HKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 596 (1134)
Q Consensus 517 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 596 (1134)
+.. +.++++-...+.|.+.+++.................+++.|.+..|+..... ....|...++...........
T Consensus 93 ~~~-~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~~~~l~~~- 168 (619)
T 3s94_A 93 WLG-EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRFIIINS- 168 (619)
T ss_dssp TTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEEEECS-
T ss_pred ecC-CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCceEEEEeC-
Confidence 533 3567777778999999987654444433334456789999987666665322 134577777654333222222
Q ss_pred CCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCc
Q 001163 597 GKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGI 675 (1134)
Q Consensus 597 ~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 675 (1134)
.-.....+++++++..|+.+. ..+.|...|++........... ......+++..+ ..+.+-...+.|...|..++.
T Consensus 169 ~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 169 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence 223578899999877777776 6678999998765443333211 223457777655 444555567788888887763
Q ss_pred eeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceee
Q 001163 676 RLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWK 755 (1134)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~ 755 (1134)
. ...+.........+ . .+.+..+ |...-.+-...+ +++ .+.+-.
T Consensus 246 ~-~~~i~~~~~~p~~i----------------~--v~~~~~q----p~~~n~C~~~ng-----------~Cs--~lCl~~ 289 (619)
T 3s94_A 246 G-LREIHSDIFSPMDI----------------H--AFSQQRQ----PNATNPCGIDNG-----------GCS--HLCLMS 289 (619)
T ss_dssp C-CEECCSCCCCCSEE----------------E--ECCGGGS----CCCCCTTTTTGG-----------GCS--SEEEEC
T ss_pred c-cEEEecCCCCCcEE----------------E--EEccccC----CCccccccCCCC-----------ccc--ceEECC
Confidence 2 22322211110000 0 0000000 000000000000 000 000000
Q ss_pred ecccCCcccee---ccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcc
Q 001163 756 LTEITEPSQCR---SLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGIL 832 (1134)
Q Consensus 756 ~~~~~~~~~~~---~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 832 (1134)
... ....|. .+.+.. ...+|. .....+|+.+. .+.|+..++.... ...
T Consensus 290 ~~~--~~~~C~C~~g~~l~~----d~~~C~--~~~~~~Ll~~~-~~~i~~i~l~~~~--------------------~~~ 340 (619)
T 3s94_A 290 PVK--PFYQCACPTGVKLLE----NGKTCK--DGATELLLLAR-RTDLRRISLDTPD--------------------FTD 340 (619)
T ss_dssp SST--TSEEEECCTTCCBCT----TSSCBC--SSCSEEEEEEE-SSCEEEEESSSTT--------------------CCC
T ss_pred CCC--CCceEeCCchheecc----cCcccC--CCCceEEEEEc-ccceEEEecCCCc--------------------cce
Confidence 000 000000 000000 000000 01112233332 2344443333211 001
Q ss_pred cccCCCCCCCCCCeeEEEEcCCCCeEEEee--CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 001163 833 MTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQ 910 (1134)
Q Consensus 833 ~~~~~~~~~h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~ 910 (1134)
....+. .-..+.+++|++.+..|..++ .+.|+.+++........+.........+++.+.++++..+-+..+.|.
T Consensus 341 ~~~~~~---~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~ 417 (619)
T 3s94_A 341 IVLQLE---DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIE 417 (619)
T ss_dssp EECCCS---CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred eEEecc---ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEE
Confidence 111111 234577899998766666665 578999998764443344433456778999874566666666678999
Q ss_pred EEEcccceEEEeccCccCceEEEEEeeCCCEEEEEe--CCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCC
Q 001163 911 IYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSG--ADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD 988 (1134)
Q Consensus 911 iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d 988 (1134)
+.++........+...-....+|++.|....|+.+. ....|...+++..... .+ . .... .....++++++
T Consensus 418 v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~---~l-~-~~~l---~~P~GlalD~~ 489 (619)
T 3s94_A 418 VTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV---VL-V-NTSL---GWPNGLALDYD 489 (619)
T ss_dssp EEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---EE-E-CSSC---SCEEEEEEETT
T ss_pred EEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE---EE-E-eCCC---CCCeeeEEccc
Confidence 999875432222223345678999999744444433 2356777777653311 11 1 1111 34688999998
Q ss_pred CCEEEEE--eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEe-cCCcEEEeecCCCc
Q 001163 989 QTHLLAV--HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAF-EEGSVGVLTASTLR 1053 (1134)
Q Consensus 989 g~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s-~Dg~i~vwd~~~~~ 1053 (1134)
+..|..+ ..+.|..+++.... ...+.. ..-....++++..+ +|+.+. ..+.|...|..+|.
T Consensus 490 ~~~LY~aD~~~~~I~~~~~dG~~-~~~~~~-~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 490 EGKIYWGDAKTDKIEVMNTDGTG-RRVLVE-DKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp TTEEEEEETTTTEEEEEESSSCC-CEEEEE-CCCCSSCCEEEETT--EEEEECTTSSCEEEEESSSCC
T ss_pred CCEEEEEECCCCEEEEEecCCCc-eEEEec-cCCCCcEEEEEECC--EEEEeecCCCeEEEEEcCCCc
Confidence 8888775 44678888886433 233221 11122234555433 555444 44677777777763
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.14 E-value=7.7e-09 Score=125.56 Aligned_cols=192 Identities=14% Similarity=0.112 Sum_probs=126.4
Q ss_pred EEEEcCCCCcEEEEEeCCCc-------------------EEEEEcccceEEEeccC--cc-------CceEEEEEeeCCC
Q 001163 889 FLAFHPQDNNIIAIGMEDSS-------------------IQIYNVRVDEVKTKLKG--HQ-------KRITGLAFSNTLN 940 (1134)
Q Consensus 889 ~l~~sp~~~~~la~g~~dg~-------------------i~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~~ 940 (1134)
.++++| ++.+|++++.++. |..+|..+|+.+..++. |. .++.-.....+|+
T Consensus 239 ~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 578888 6778888888764 99999999999877654 32 1222223334665
Q ss_pred ---EEEEEeCCCcEEEEECCCCccccceeeee------------------------cCCC-------CCCCCCceEEEEc
Q 001163 941 ---VLVSSGADSQLCVWSTDGWEKQASKFLTI------------------------PNGR-------TASALADTRVQFH 986 (1134)
Q Consensus 941 ---~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~------------------------~~~~-------~~~~~~v~~l~fs 986 (1134)
.++.++.+|.++++|..+++..-...+.. ..+. ......-..++|+
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 78899999999999999988541100000 0000 0000112347899
Q ss_pred CCCCEEEEE-e---------------------------------------------eceEEEEeCCCcccceeeccCCCc
Q 001163 987 LDQTHLLAV-H---------------------------------------------ETQIAIYEAPKLECLKQFVPREAS 1020 (1134)
Q Consensus 987 ~dg~~l~~~-~---------------------------------------------d~~i~iwd~~~~~~~~~~~~~~h~ 1020 (1134)
|+..++++. . ++.|..||+.+++.+..+...
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--- 474 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV--- 474 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES---
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC---
Confidence 998888773 2 378999999999988776532
Q ss_pred cCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEec
Q 001163 1021 GPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLT 1092 (1134)
Q Consensus 1021 ~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~ 1092 (1134)
..+....++..|.++++++.||.++.||..+|+.+.++.... + ..-.++ .|..+..+|+++.+.
T Consensus 475 ~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~----~--~~~~p~--ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 475 TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAAS----G--VMAAPV--TYSVDGEQYVTFMAG 538 (689)
T ss_dssp SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS----C--CCSCCE--EEEETTEEEEEEEEC
T ss_pred CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCC----C--cccCce--EEEECCEEEEEEEec
Confidence 233344667788899999999999999999999998776332 1 111244 455544446665544
No 233
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.13 E-value=2.9e-08 Score=109.20 Aligned_cols=224 Identities=14% Similarity=0.076 Sum_probs=145.6
Q ss_pred EEEEEEcCCCC-EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce
Q 001163 421 VNRVMWSPDGT-LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK 499 (1134)
Q Consensus 421 V~~l~~spd~~-~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~ 499 (1134)
..+.+|+|++. ++++...++.|..||..+++... +. +...+.+++|+++|+ ++++. . ..|.+||..+++.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~----~~-~~~~v~~i~~~~dg~--l~v~~-~-~gl~~~d~~~g~~ 121 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV----HA-LPFMGSALAKISDSK--QLIAS-D-DGLFLRDTATGVL 121 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE----EE-CSSCEEEEEEEETTE--EEEEE-T-TEEEEEETTTCCE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE----EE-CCCcceEEEEeCCCe--EEEEE-C-CCEEEEECCCCcE
Confidence 45678999754 55666678899999998875321 22 346799999999998 45543 3 4599999988875
Q ss_pred eEEecC----CCcCEEEEeccccCCccEEEEecCC----CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEec
Q 001163 500 QYIFEG----HESPVYSICPHHKENIQFIFSTATD----GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGT 571 (1134)
Q Consensus 500 ~~~~~~----h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 571 (1134)
...... ....+..+++++ +|.++++...+ +...+|.++. .....+.........++|+||++.++.+..
T Consensus 122 ~~~~~~~~~~~~~~~~~i~~d~--~G~l~v~~~~~~~~~~~~~l~~~~~-g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 122 TLHAELESDLPGNRSNDGRMHP--SGALWIGTMGRKAETGAGSIYHVAK-GKVTKLFADISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp EEEECSSTTCTTEEEEEEEECT--TSCEEEEEEETTCCTTCEEEEEEET-TEEEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred EEEeeCCCCCCCCCCCCEEECC--CCCEEEEeCCCcCCCCceEEEEEeC-CcEEEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence 433221 123577888754 55666554321 2334444442 222222222234678999999998876642
Q ss_pred CCCCCeEEEEEeCC--CC-ee-----EEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCC
Q 001163 572 NKEGESYLVEWNES--EG-AV-----KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQ 643 (1134)
Q Consensus 572 ~~~~~~~i~~wd~~--~~-~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 643 (1134)
....|.+||.. ++ .. ...+.... .....+++.++|+..++...++.|.+||. +++.+..+..+ ..
T Consensus 199 ---~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~-~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~--~~ 271 (326)
T 2ghs_A 199 ---KVNRLMRVPLDARTGLPTGKAEVFIDSTGIK-GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP--GK 271 (326)
T ss_dssp ---TTCEEEEEEBCTTTCCBSSCCEEEEECTTSS-SEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS--CS
T ss_pred ---CCCEEEEEEcccccCCcccCceEEEECCCCC-CCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC--CC
Confidence 23469999985 55 31 22222222 25678999999987777767789999998 67777777654 34
Q ss_pred CcceEEEc-CCCcEEEEEECC
Q 001163 644 ASPCIRFN-KEGILLAVSTND 663 (1134)
Q Consensus 644 ~v~~v~~s-p~~~~l~~~~~d 663 (1134)
.+.+++|+ +++..|++++..
T Consensus 272 ~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 272 QTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp BEEEEEEESTTSCEEEEEEBC
T ss_pred CcEEEEEecCCCCEEEEEecC
Confidence 68899998 888777665544
No 234
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.11 E-value=9.3e-08 Score=107.86 Aligned_cols=149 Identities=13% Similarity=0.045 Sum_probs=98.8
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEecCC---------CcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecC
Q 001163 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGH---------ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA 549 (1134)
Q Consensus 479 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h---------~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 549 (1134)
.++.++.++.|..+|..+|+.+..+... ...+.+.. ..++..++.++.++.|..+|..+++.......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV---TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE---EEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc---eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 5778888999999999999998776542 12232221 11225788888899999999998887776655
Q ss_pred CCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCc----eEEEEEcCCCCEEEEEeCCCeEEEE
Q 001163 550 PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS----VGVVQFDTTKNRFLAAGDEFMIKFW 625 (1134)
Q Consensus 550 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~iw 625 (1134)
........... + ..+++++. ++.|..+|..+|+.+..+....... ....... +..++.++.++.|..+
T Consensus 132 ~~~~~~~p~~~-~-~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~ 203 (376)
T 3q7m_A 132 AGEALSRPVVS-D-GLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAV 203 (376)
T ss_dssp SSCCCSCCEEE-T-TEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEE
T ss_pred CCceEcCCEEE-C-CEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEE
Confidence 43322222222 3 45555543 3469999999999888776543210 0112222 4578888889999999
Q ss_pred EcCCCceeEEEec
Q 001163 626 DMDNVNLLASIDA 638 (1134)
Q Consensus 626 d~~~~~~~~~~~~ 638 (1134)
|..+|+.+.....
T Consensus 204 d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 204 LMEQGQMIWQQRI 216 (376)
T ss_dssp ETTTCCEEEEEEC
T ss_pred ECCCCcEEEEEec
Confidence 9999998877653
No 235
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.08 E-value=2.6e-08 Score=108.57 Aligned_cols=233 Identities=14% Similarity=0.097 Sum_probs=151.4
Q ss_pred CCCCEEEEEEcCCCC-EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECC
Q 001163 417 YTASVNRVMWSPDGT-LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 495 (1134)
Q Consensus 417 h~~~V~~l~~spd~~-~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~ 495 (1134)
........+|+|+|+ +++++..++.|..|+. +++ .. .+..+...+..++++++|+ ++++...++.|.+||..
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDAD 115 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECTT
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECCC
Confidence 445677899999998 5667777899999998 444 22 3445667799999999998 56655566889999975
Q ss_pred CCceeEEec---CC-CcCEEEEeccccCCccEEEE----ecC-------------CCcEEEEecCCCCceeeecCCCCCe
Q 001163 496 TGTKQYIFE---GH-ESPVYSICPHHKENIQFIFS----TAT-------------DGKIKAWLYDNLGSRVDYDAPGHSS 554 (1134)
Q Consensus 496 ~~~~~~~~~---~h-~~~v~~~~~~~~~~~~~l~s----~s~-------------dg~i~vwd~~~~~~~~~~~~~~~~v 554 (1134)
++...... +. ...+..+++. ++|.++++ |.. .+.|..||..+++..... .....
T Consensus 116 -g~~~~~~~~~~~~~~~~~~~i~~d--~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p 190 (305)
T 3dr2_A 116 -GQAHLLVGRYAGKRLNSPNDLIVA--RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP 190 (305)
T ss_dssp -SCEEEEECEETTEECSCCCCEEEC--TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred -CCEEEEEeccCCCccCCCCCEEEC--CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence 65432221 11 1235567764 45677776 332 245666766554443332 33456
Q ss_pred eEEEECcCCCEEEEEecCC--CCCeEEEEEeCCCCee--EEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 001163 555 TMMAYSADGARLFSCGTNK--EGESYLVEWNESEGAV--KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV 630 (1134)
Q Consensus 555 ~~~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 630 (1134)
..++|+||++.|+.+.... .+...|++|++..+.. ...+..........+++.++|+..+ +..+ .|.+|+. .+
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~-~g 267 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFDS-DG 267 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSS-EEEEECT-TS
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCC-cEEEECC-CC
Confidence 7899999999887765321 0124699999875531 1122111122455688999998444 4444 5999998 57
Q ss_pred ceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEE
Q 001163 631 NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK 667 (1134)
Q Consensus 631 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~ 667 (1134)
+.+..+.... .+.+++|+++++.|..++.++..+
T Consensus 268 ~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 268 QLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp CEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 7777776542 478999999998888888764333
No 236
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.03 E-value=2.4e-07 Score=104.47 Aligned_cols=224 Identities=8% Similarity=0.018 Sum_probs=140.7
Q ss_pred CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecC-------CCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE
Q 001163 429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAH-------VGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY 501 (1134)
Q Consensus 429 d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h-------~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 501 (1134)
++..|.+++.++.|..+|..+|+.+.... +... ...+.+.-.. ++. .++.++.++.|..+|..+|+.+.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~~-~~~--~v~v~~~~g~l~a~d~~tG~~~W 127 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVS-LAEKDGWFSKEPALLSGGVTV-SGG--HVYIGSEKAQVYALNTSDGTVAW 127 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEE-CCC---CCSCCCCCEEEEEEE-ETT--EEEEEETTSEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeec-CccccccccccCcccccCceE-eCC--EEEEEcCCCEEEEEECCCCCEEE
Confidence 46788888889999999999998765322 2111 2233322222 344 47788889999999999999987
Q ss_pred EecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCe-----eEEEECcCCCEEEEEecCCCCC
Q 001163 502 IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSS-----TMMAYSADGARLFSCGTNKEGE 576 (1134)
Q Consensus 502 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~~~~~~ 576 (1134)
.............. . +..++.++.++.|..+|..+++............ ...... +..++.+.. +
T Consensus 128 ~~~~~~~~~~~p~~--~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~----~ 197 (376)
T 3q7m_A 128 QTKVAGEALSRPVV--S--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGD----N 197 (376)
T ss_dssp EEECSSCCCSCCEE--E--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCT----T
T ss_pred EEeCCCceEcCCEE--E--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcC----C
Confidence 77644322111111 1 2478888889999999998888777655432211 122222 345555543 3
Q ss_pred eEEEEEeCCCCeeEEEecCCCCCc---------e-EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcc
Q 001163 577 SYLVEWNESEGAVKRTYHGLGKRS---------V-GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASP 646 (1134)
Q Consensus 577 ~~i~~wd~~~~~~~~~~~~~~~~~---------v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 646 (1134)
+.+..+|..+|+.+..+....... + ..... .+..++.++.++.+..+|..+++.+...... ...
T Consensus 198 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~----~~~ 271 (376)
T 3q7m_A 198 GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKRELG----SVN 271 (376)
T ss_dssp TEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEECCC----CEE
T ss_pred CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeeccCC----CCC
Confidence 459999999999887765432100 0 01111 2467788888899999999999887665432 222
Q ss_pred eEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 647 CIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 647 ~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
.+.. ++..+++++.++.+..+|..++
T Consensus 272 ~~~~--~~~~l~~~~~~g~l~~~d~~tG 297 (376)
T 3q7m_A 272 DFIV--DGNRIYLVDQNDRVMALTIDGG 297 (376)
T ss_dssp EEEE--ETTEEEEEETTCCEEEEETTTC
T ss_pred CceE--ECCEEEEEcCCCeEEEEECCCC
Confidence 3332 3556777777888888887666
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.03 E-value=1.5e-08 Score=112.18 Aligned_cols=177 Identities=8% Similarity=0.060 Sum_probs=108.0
Q ss_pred EEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec
Q 001163 469 LAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD 548 (1134)
Q Consensus 469 v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 548 (1134)
.....++. +..++.++.|..|| .+++.+..+......+.++.. ..++ .++.++.+ |..+|. +++....+.
T Consensus 25 ~~~d~~g~---l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~--~~~g-~l~v~t~~--l~~~d~-~g~~~~~~~ 94 (330)
T 3hxj_A 25 PILAKNGT---IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSI--GKDG-TIYFGSDK--VYAINP-DGTEKWRFD 94 (330)
T ss_dssp CEECTTSC---EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEE--TTTT-EECCSSCE--EEEECC-CGGGGGGSC
T ss_pred ceEccCCe---EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEE--ecCC-cEEEecCc--EEEECC-CCcEEEEEE
Confidence 44545665 67777888999999 899887766544444455544 3343 46656655 888875 344333333
Q ss_pred CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 001163 549 APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD 628 (1134)
Q Consensus 549 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 628 (1134)
..........+. +..+..++. +..|..+|.. ++....+..... .+.++...+++. ++.++.++.|..+|..
T Consensus 95 ~~~~~~~~~~~~--~~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~~-~~~~~~~~~~g~-l~vgt~~~~l~~~d~~ 165 (330)
T 3hxj_A 95 TKKAIVSDFTIF--EDILYVTSM----DGHLYAINTD-GTEKWRFKTKKA-IYATPIVSEDGT-IYVGSNDNYLYAINPD 165 (330)
T ss_dssp C-----CCEEEE--TTEEEEECT----TSEEEEECTT-SCEEEEEECSSC-CCSCCEECTTSC-EEEECTTSEEEEECTT
T ss_pred CCCCcccCceEE--CCEEEEEec----CCEEEEEcCC-CCEEEEEcCCCc-eeeeeEEcCCCE-EEEEcCCCEEEEECCC
Confidence 322222333333 444555543 2358999988 777666654433 455666766665 6667778999999998
Q ss_pred CCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEE
Q 001163 629 NVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA 670 (1134)
Q Consensus 629 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~ 670 (1134)
++.+...... ...+.++...+++.+.+. + +.+..++
T Consensus 166 -g~~~~~~~~~--~~~~~~~~~d~~g~l~v~-t--~~l~~~d 201 (330)
T 3hxj_A 166 -GTEKWRFKTN--DAITSAASIGKDGTIYFG-S--DKVYAIN 201 (330)
T ss_dssp -SCEEEEEECS--SCCCSCCEECTTCCEEEE-S--SSEEEEC
T ss_pred -CCEeEEEecC--CCceeeeEEcCCCEEEEE-e--CEEEEEC
Confidence 7777666543 335666777777765543 3 6677666
No 238
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.03 E-value=5.1e-08 Score=107.11 Aligned_cols=233 Identities=13% Similarity=0.102 Sum_probs=148.9
Q ss_pred EEc--CCCCeEEEee--CCeEEEEEccCC----eEEEEecC-------CCCCeEEEEEcCCCCcEEEEEeCC------Cc
Q 001163 850 ALS--KNDSYVMSAS--GGKISLFNMMTF----KTMTTFMP-------PPPAATFLAFHPQDNNIIAIGMED------SS 908 (1134)
Q Consensus 850 ~~s--~dg~~la~~s--dg~i~lwd~~~~----~~~~~~~~-------~~~~v~~l~~sp~~~~~la~g~~d------g~ 908 (1134)
.++ +++++|++.+ +++|.++|+.+. +...++.. ....-..+.++| ++ ++++...+ |.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence 336 8889988877 688999999765 66666630 112456678889 77 66666555 78
Q ss_pred EEEEEcccceEEEeccCccC---ceEEEEEeeCCCEEEEEe-------------------CCCcEEEEECCCCcccccee
Q 001163 909 IQIYNVRVDEVKTKLKGHQK---RITGLAFSNTLNVLVSSG-------------------ADSQLCVWSTDGWEKQASKF 966 (1134)
Q Consensus 909 i~iwd~~~~~~~~~l~~h~~---~V~~l~~s~d~~~l~s~s-------------------~Dg~i~iwd~~~~~~~~~~~ 966 (1134)
|.++|..+++.+.++..-.. --..+.|+|+++.+++.. .+.+|.+||+.+++... .
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--t 243 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--S 243 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--E
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--E
Confidence 99999999999988873322 234588899999999884 36889999999854222 2
Q ss_pred eeecCCCCCCCCCceEEEE--cCCCCEEEEE-------eeceEEEEeCCCcccceeec--cCC----------------C
Q 001163 967 LTIPNGRTASALADTRVQF--HLDQTHLLAV-------HETQIAIYEAPKLECLKQFV--PRE----------------A 1019 (1134)
Q Consensus 967 ~~~~~~~~~~~~~v~~l~f--s~dg~~l~~~-------~d~~i~iwd~~~~~~~~~~~--~~~----------------h 1019 (1134)
+.+.. .. .....+.| +|+|+++.++ .+++|.+|..+.++...... ... -
T Consensus 244 I~vg~--~g--~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 244 LTLGE--EN--RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp EESCT--TE--EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred EecCC--CC--CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence 33321 10 22455555 9999998884 34678776654432111100 000 0
Q ss_pred ccCEEEEEEccCCCEEEEEec-CCcEEEeecCCC---cceeecCCCccc-----CCCCCCCceeEEEEecCCCCCEEEEE
Q 001163 1020 SGPITHATYSCDSQSIYVAFE-EGSVGVLTASTL---RLRCRINPTAYL-----PTNPSLRVYPLVIAGNPTDPNQFALG 1090 (1134)
Q Consensus 1020 ~~~v~~~~~s~dg~~l~s~s~-Dg~i~vwd~~~~---~~~~~~~~~~~~-----~~~h~~~v~~~~~~~~p~~~~~l~s~ 1090 (1134)
......|.+|+||++|+++.. .+.|.+||+... +++..+.....+ +.|......+-.+.++| |+++|+++
T Consensus 320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVa 398 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVT 398 (462)
T ss_dssp CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEE
T ss_pred CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEE
Confidence 135788999999999987776 589999998632 334333322100 00111111345567889 78888888
Q ss_pred e
Q 001163 1091 L 1091 (1134)
Q Consensus 1091 ~ 1091 (1134)
.
T Consensus 399 N 399 (462)
T 2ece_A 399 N 399 (462)
T ss_dssp C
T ss_pred c
Confidence 8
No 239
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.98 E-value=2.4e-07 Score=101.74 Aligned_cols=266 Identities=14% Similarity=0.145 Sum_probs=165.8
Q ss_pred CcccccCCC---CCceeEEEee--c-CCCeeEEEE-----------c--CCCCeEEEEEeCCCcEEEEecCCccceeeec
Q 001163 336 GQSSYSTDD---LPKTVVMTLN--Q-GSAVKSMDF-----------H--PVQQILLVVGTNMGDVMLWEVGSRERIAVKS 396 (1134)
Q Consensus 336 ~l~~~~~d~---~~~~~~~~~~--h-~~~V~~v~f-----------s--p~g~~lla~gs~dg~v~iwd~~~~~~~~~~~ 396 (1134)
+|++...|. ...+.++.+. + ......+.| + +++++|++.|..++.|.|+|+.+..... +-
T Consensus 44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p-~~ 122 (462)
T 2ece_A 44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREP-KI 122 (462)
T ss_dssp EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSC-EE
T ss_pred eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCc-ee
Confidence 366665553 2356666654 2 224444445 7 8999999999999999999997542110 00
Q ss_pred eeeeeccccCccccccccccC-CCCEEEEEEcCCCCEEEEEeCC------CEEEEEEccCCceeeeeeeeecCCC-CEEE
Q 001163 397 FKVWELGACSMPLQASLSSDY-TASVNRVMWSPDGTLFGVAYSK------HIVHLYTYHGGDELRNHLEIEAHVG-SVND 468 (1134)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spd~~~las~s~d------g~v~iwd~~~~~~~~~~~~l~~h~~-~V~~ 468 (1134)
.++.+ ...+.... ...-..+..+|+| +++++..+ |.|.+.|..+++.+.... ..+... --..
T Consensus 123 ~k~ie--------~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd 192 (462)
T 2ece_A 123 IKVIE--------PEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYD 192 (462)
T ss_dssp EEEEC--------HHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCC
T ss_pred eeeec--------hhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEc-cCCCCccccce
Confidence 01110 00001011 1245667889999 77776555 789999999988766332 222222 2345
Q ss_pred EEEecCCCceEEEEEe-------------------CCCeEEEEECCCCceeEEecCC--CcCEEEEeccccCCccEEEEe
Q 001163 469 LAFSYPNKQLSVVTCG-------------------EDRVIKVWDAVTGTKQYIFEGH--ESPVYSICPHHKENIQFIFST 527 (1134)
Q Consensus 469 v~~s~~~~~~~l~s~s-------------------~d~~i~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~ 527 (1134)
+.|+|+++ .+++.. .+.+|.+||+.+++.+.++.-- ......+.|..++++.+++.+
T Consensus 193 ~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~ 270 (462)
T 2ece_A 193 FWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFIN 270 (462)
T ss_dssp EEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEE
T ss_pred EEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEE
Confidence 88899999 677764 4689999999999888877642 123445666556677777666
Q ss_pred c------CCCcEEEEecCCCCce--ee--ecC-------C---------CCCeeEEEECcCCCEEEEEecCCCCCeEEEE
Q 001163 528 A------TDGKIKAWLYDNLGSR--VD--YDA-------P---------GHSSTMMAYSADGARLFSCGTNKEGESYLVE 581 (1134)
Q Consensus 528 s------~dg~i~vwd~~~~~~~--~~--~~~-------~---------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 581 (1134)
+ .+++|.+|..+.+... .. +.. . ......+.+|+||++|+++... ...|.+
T Consensus 271 ~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg---~d~Vav 347 (462)
T 2ece_A 271 MVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWG---IGEVRQ 347 (462)
T ss_dssp EEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETT---TTEEEE
T ss_pred EeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCC---CCEEEE
Confidence 5 5668877665432110 00 000 0 2356789999999999988653 446999
Q ss_pred EeCCC---CeeEEEecCCCC-------------CceEEEEEcCCCCEEEEEe
Q 001163 582 WNESE---GAVKRTYHGLGK-------------RSVGVVQFDTTKNRFLAAG 617 (1134)
Q Consensus 582 wd~~~---~~~~~~~~~~~~-------------~~v~~~~~~~~~~~l~~~~ 617 (1134)
+|+.. .+.+..+..... .....+.++|||++|+++.
T Consensus 348 fdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 348 YDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99852 355555543210 0246789999999999886
No 240
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.98 E-value=1.9e-08 Score=111.32 Aligned_cols=259 Identities=11% Similarity=0.062 Sum_probs=165.8
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCC
Q 001163 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 440 (1134)
Q Consensus 361 ~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg 440 (1134)
++.+..+|. +..|+.++.|..|| .+++.+.. ...+...+.++...++|.+.+ ++.+
T Consensus 24 ~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~-------------------~~~~~~~~~~~~~~~~g~l~v-~t~~- 79 (330)
T 3hxj_A 24 SPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWF-------------------FKSGEIIECRPSIGKDGTIYF-GSDK- 79 (330)
T ss_dssp CCEECTTSC--EECSSTTTTTEEEC-TTSCEEES-------------------SCGGGEEEECCEETTTTEECC-SSCE-
T ss_pred CceEccCCe--EEEEcCCCEEEEEC-CCCcEEEE-------------------EecCCCcccceEEecCCcEEE-ecCc-
Confidence 445556676 35677888999999 77775432 112334567777777776444 4444
Q ss_pred EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCC
Q 001163 441 IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKEN 520 (1134)
Q Consensus 441 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 520 (1134)
|..+|. +++.+.. +...........+. ++ .+..++.++.|..+|.. ++.+.....+...+.++.. ..+
T Consensus 80 -l~~~d~-~g~~~~~---~~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~~ 147 (330)
T 3hxj_A 80 -VYAINP-DGTEKWR---FDTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SED 147 (330)
T ss_dssp -EEEECC-CGGGGGG---SCC-----CCEEEE-TT---EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CTT
T ss_pred -EEEECC-CCcEEEE---EECCCCcccCceEE-CC---EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cCC
Confidence 888886 5554432 22222222333333 44 47778889999999988 8877776655544444444 334
Q ss_pred ccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCc
Q 001163 521 IQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS 600 (1134)
Q Consensus 521 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 600 (1134)
+ .++.++.++.|..+|.. +............+.++...+++...+.. . .|..+| .+++....+..... .
T Consensus 148 g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~-----~l~~~d-~~g~~~~~~~~~~~-~ 216 (330)
T 3hxj_A 148 G-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--D-----KVYAIN-PDGTEKWNFYAGYW-T 216 (330)
T ss_dssp S-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--S-----SEEEEC-TTSCEEEEECCSSC-C
T ss_pred C-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--C-----EEEEEC-CCCcEEEEEccCCc-c
Confidence 3 46678888999999988 66655665555567778888888766554 2 299999 77777766665433 5
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163 601 VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (1134)
Q Consensus 601 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 671 (1134)
+.++...+++ .+..++.++.|..+|. +++.+..+... ...+..+.+.+++ .|.+++.+|.+..++.
T Consensus 217 ~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~--~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 217 VTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTG--KRIESSPVIGNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp CSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECS--SCCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred eeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCC--CCccccceEcCCC-eEEEecCCCCEEEECC
Confidence 7777888776 4566677788888874 56666665543 2234455666555 4566778888888885
No 241
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.97 E-value=0.00011 Score=87.48 Aligned_cols=209 Identities=10% Similarity=-0.006 Sum_probs=118.4
Q ss_pred ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001163 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (1134)
Q Consensus 354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 433 (1134)
..-..+.+++|++.+.+++.+-...+.|..++++....... ++...-.....+++.+.+..|
T Consensus 37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~------------------v~~~~~~~P~GlAvD~~~~~l 98 (619)
T 3s94_A 37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKL 98 (619)
T ss_dssp BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE------------------EECSSCSCEEEEEEETTTTEE
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE------------------EEeCCCCCcCeEEEEecCCEE
Confidence 34567889999998877777766678888888875521110 012222478899999965555
Q ss_pred E-EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEE-eCCCeEEEEECCCCceeEEecCCCcCEE
Q 001163 434 G-VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTC-GEDRVIKVWDAVTGTKQYIFEGHESPVY 511 (1134)
Q Consensus 434 a-s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~h~~~v~ 511 (1134)
. +-...+.|.+.++.+... +. .+...-.....|++.|.+.. +++|- +..+.|...++............-....
T Consensus 99 y~~d~~~~~I~v~~~dG~~~-~~--l~~~~l~~P~~Iavdp~~g~-ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~ 174 (619)
T 3s94_A 99 YWTDSETNRIEVSNLDGSLR-KV--LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPN 174 (619)
T ss_dssp EEEETTTTEEEEEETTSCSC-EE--EECSSCSCCCCEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSSCSSEE
T ss_pred EEEeCCCCEEEEEECCCCCE-EE--EEeCCCCCCceEEEecCCCe-EEEeccCCCCEEEEEECCCCceEEEEeCCCCCCc
Confidence 4 455678999999986532 21 12233445778999997664 33333 2346777777543322222223344567
Q ss_pred EEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeE
Q 001163 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590 (1134)
Q Consensus 512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 590 (1134)
.+++++.. +.+.++-...+.|...|++.................+++..+ .++..-. ....|...|..+++..
T Consensus 175 Glald~~~-~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~---~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 175 GLTLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDW---STHSILACNKYTGEGL 247 (619)
T ss_dssp EEEEETTT-TEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECT---TTCSEEEEESSSCCCC
T ss_pred EEEEEccC-CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecC---CCCEEEEEECCCCccc
Confidence 88886543 355566666788888888653333222212222346666554 4544432 2334777777666543
No 242
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.96 E-value=6e-08 Score=110.52 Aligned_cols=272 Identities=14% Similarity=0.094 Sum_probs=172.2
Q ss_pred cCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEE-c-CCCCEEEEEe------------------CCC
Q 001163 561 ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQF-D-TTKNRFLAAG------------------DEF 620 (1134)
Q Consensus 561 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~dg 620 (1134)
+||++++.+..+ ...|.+.|+.+.++...+.-........+++ . |+++++++++ .++
T Consensus 99 ~DG~~lfVnd~~---~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 99 YDGRFLFMNDKA---NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEEETT---TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred cCCCEEEEEcCC---CCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 389999886533 4569999999999888665443335778887 5 9999999985 345
Q ss_pred eEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcE-EEEEccCCceeEEEeccCcccccccchhhhhcc
Q 001163 621 MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI-KILANADGIRLLRTVESRTFDASRVASAAIVKA 699 (1134)
Q Consensus 621 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i-~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1134)
.+.+.|.++.+.+.++...+ ....++++|+|+++++.+.+..- ...+..+.
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~------------------------- 227 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSG---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTA------------------------- 227 (595)
T ss_dssp EEEEEETTTTEEEEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTC-------------------------
T ss_pred eEEEEECCCCeEEEEEEeCC---CccceEECCCCCEEEEEecCcccCcchhhccc-------------------------
Confidence 79999999999998887643 24678899999999998866321 00000000
Q ss_pred cccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccE
Q 001163 700 PAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRV 779 (1134)
Q Consensus 700 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i 779 (1134)
..-..+.+.+.....
T Consensus 228 ----------------------------------------------~~~d~v~V~~~~~~~------------------- 242 (595)
T 1fwx_A 228 ----------------------------------------------AEMDHIVVFNIAEIE------------------- 242 (595)
T ss_dssp ----------------------------------------------CSEEEEEEEEHHHHH-------------------
T ss_pred ----------------------------------------------cccceEEEeecccee-------------------
Confidence 000122222221100
Q ss_pred EEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEE
Q 001163 780 SRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVM 859 (1134)
Q Consensus 780 ~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la 859 (1134)
.+.++|+.... +.+.|.|....+ +......++ -.....++.++|||++++
T Consensus 243 ---~~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ip---vg~~PhGv~~sPDGk~v~ 292 (595)
T 1fwx_A 243 ---KAIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIP---IANNPHGCNMAPDKKHLC 292 (595)
T ss_dssp ---HHHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEE---EESSCCCEEECTTSSEEE
T ss_pred ---EeccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEe---cCCCceEEEEcCCCCEEE
Confidence 01223332222 225454432100 211100111 123456899999999999
Q ss_pred Eee--CCeEEEEEccCCe------------EEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc---------
Q 001163 860 SAS--GGKISLFNMMTFK------------TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV--------- 916 (1134)
Q Consensus 860 ~~s--dg~i~lwd~~~~~------------~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~--------- 916 (1134)
+++ +++|.++|+.+.+ ...++. -......++|+| +|...++..-|++|.+||+.+
T Consensus 293 V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~ 370 (595)
T 1fwx_A 293 VAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEK 370 (595)
T ss_dssp EECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCS
T ss_pred EeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccc
Confidence 887 6889999998753 333333 345688999999 776666777899999999987
Q ss_pred -ceEEEeccCccCce-----EEEEEeeCCCEEEEEeC---CCc----------EEEEECCCCc
Q 001163 917 -DEVKTKLKGHQKRI-----TGLAFSNTLNVLVSSGA---DSQ----------LCVWSTDGWE 960 (1134)
Q Consensus 917 -~~~~~~l~~h~~~V-----~~l~~s~d~~~l~s~s~---Dg~----------i~iwd~~~~~ 960 (1134)
.+.+.++..|..+- .++.++|||++|+++.. |+- -.++|+.+++
T Consensus 371 ~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 371 VDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred cceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 56677777665432 22355799999998753 442 2788997655
No 243
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.92 E-value=3.4e-10 Score=126.85 Aligned_cols=186 Identities=15% Similarity=0.041 Sum_probs=111.5
Q ss_pred CCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCc-eE
Q 001163 854 NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKR-IT 931 (1134)
Q Consensus 854 dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~-V~ 931 (1134)
++..+++++ |+.|+.||..+|+.+..+.. +.+.+..+.. ++.++++++.||.|+.||..+|+.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 456777777 89999999999999999876 5555555666 6778888889999999999999887666544221 11
Q ss_pred -EEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcc
Q 001163 932 -GLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLE 1009 (1134)
Q Consensus 932 -~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~ 1009 (1134)
+..+. ++..+++++.|+.|+.||..+|+..- ....+. ...++|++..+++ +.++.|+.||..+|+
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w-----~~~~~~-------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQ-----TLSSAF-------ADSLSPSTSLLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC----------------------------------EEEEEEEEEEECCCSSSSS
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEE-----EecCCC-------cccccccCCEEEEEecCCEEEEEECCCCC
Confidence 11111 34577888889999999999877431 111111 1345667777777 578999999999999
Q ss_pred cceeeccCCCccCEEEEEEccCC---CEEEEEecCCcEEEeecCCCcceeecC
Q 001163 1010 CLKQFVPREASGPITHATYSCDS---QSIYVAFEEGSVGVLTASTLRLRCRIN 1059 (1134)
Q Consensus 1010 ~~~~~~~~~h~~~v~~~~~s~dg---~~l~s~s~Dg~i~vwd~~~~~~~~~~~ 1059 (1134)
.+..+... .....+++.+. ..+++++.||.|+.||..+|+.+.+..
T Consensus 152 ~~W~~~~~----~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 152 LRWNATYF----DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CCCEEEEE----EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EEEeEecc----cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 87665421 12233444432 557778899999999999999877654
No 244
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.91 E-value=4.4e-08 Score=111.61 Aligned_cols=238 Identities=9% Similarity=0.034 Sum_probs=159.4
Q ss_pred CCCCeEEEee--CCeEEEEEccCCeEEEEecCC-CCCeEEEEE-c-CCCCcEEEEEe------------------CCCcE
Q 001163 853 KNDSYVMSAS--GGKISLFNMMTFKTMTTFMPP-PPAATFLAF-H-PQDNNIIAIGM------------------EDSSI 909 (1134)
Q Consensus 853 ~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~~-~~~v~~l~~-s-p~~~~~la~g~------------------~dg~i 909 (1134)
+||+++.+.. ++.|.+.|+.+.++...+.-. ......+++ + | +++++++++ .++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence 4899988887 467999999999988865433 356888898 5 8 788888874 34589
Q ss_pred EEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCC--------------------------------------cE
Q 001163 910 QIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS--------------------------------------QL 951 (1134)
Q Consensus 910 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--------------------------------------~i 951 (1134)
.+.|..+.+.+.++.--. .-..++++|||+++++++.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999998887766322 346678999999999988654 35
Q ss_pred EEEECCCCcccc-ceeeeecCCCCCCCCCceEEEEcCCCCEEEEE--eeceEEEEeCCCcc------------cceeecc
Q 001163 952 CVWSTDGWEKQA-SKFLTIPNGRTASALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLE------------CLKQFVP 1016 (1134)
Q Consensus 952 ~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~i~iwd~~~~~------------~~~~~~~ 1016 (1134)
.+.|..+.+... ...+... ....++.++|||++++++ .+.+|.++|+.+.+ .......
T Consensus 257 ~VID~~~~~~~~~~~~Ipvg-------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v 329 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 329 (595)
T ss_dssp EEEECSGGGCCSSEEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred EEEeCcccCCceeEEEEecC-------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence 566655521001 1122222 135679999999999995 67899999999763 2223321
Q ss_pred CCCccCEEEEEEccCCCEEEEEecCCcEEEeecCC----------CcceeecCCCcccCCCCCCCceeEEEEecCCCCCE
Q 001163 1017 REASGPITHATYSCDSQSIYVAFEEGSVGVLTAST----------LRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQ 1086 (1134)
Q Consensus 1017 ~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~----------~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~ 1086 (1134)
......++|++||...++.-.|++|.+||+++ ...+.++... +.| ||.. .++.+..+| ||++
T Consensus 330 ---G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-yqp-Gh~~--~~~g~t~~~-DGk~ 401 (595)
T 1fwx_A 330 ---GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQP-GHLK--TVMGETLDA-TNDW 401 (595)
T ss_dssp ---CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCE-EEEE--ETTTTSTTC-CSSE
T ss_pred ---CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-ccc-ccce--eccceEeCC-CCCE
Confidence 45789999999994345666789999999987 3333333321 111 2111 112224567 7888
Q ss_pred EEEEec---CCc----------EEEEeCCCCCCC
Q 001163 1087 FALGLT---DGG----------VYIIEPLEAEGR 1107 (1134)
Q Consensus 1087 l~s~~~---Dg~----------v~vW~~~~~~~~ 1107 (1134)
|+++.. |.- -.++|++..+++
T Consensus 402 l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 402 LVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp EEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred EEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence 888654 432 188999766654
No 245
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.89 E-value=1.2e-09 Score=122.46 Aligned_cols=190 Identities=7% Similarity=-0.035 Sum_probs=111.2
Q ss_pred CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCc
Q 001163 429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES 508 (1134)
Q Consensus 429 d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 508 (1134)
++..|++++.||.|+.||..+|+.+.. +.. +.+.+..+..++. .+++++.|+.|+.||..+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~---~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT---LKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE---EEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE---ecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 678999999999999999999997763 333 4455555667776 577788999999999999998877754422
Q ss_pred CEEEEeccccC-CccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC
Q 001163 509 PVYSICPHHKE-NIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (1134)
Q Consensus 509 ~v~~~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 587 (1134)
... ...+.- ++..+++++.|+.|+.||..+++....+..+. ...++|++..+++++. ++.|+.||..+|
T Consensus 81 ~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHH--TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred ccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 110 111111 23578888899999999999888777665433 2345678888888765 346999999999
Q ss_pred eeEEEecCCCCCceEEEEEcCCC---CEEEEEeCCCeEEEEEcCCCceeEEEec
Q 001163 588 AVKRTYHGLGKRSVGVVQFDTTK---NRFLAAGDEFMIKFWDMDNVNLLASIDA 638 (1134)
Q Consensus 588 ~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (1134)
+.+..+.... .....+..+. ..+++++.+|.|+.||..+|+.+.....
T Consensus 151 ~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 151 ELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp SCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred CEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 8766554221 1122333332 5677888999999999999998877663
No 246
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.89 E-value=0.00085 Score=85.25 Aligned_cols=574 Identities=10% Similarity=0.062 Sum_probs=281.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCEEEEEEccCCce-----eeeeeeeecCCCCEEEEEEecCC---CceEEEEEe---CCCeE
Q 001163 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDE-----LRNHLEIEAHVGSVNDLAFSYPN---KQLSVVTCG---EDRVI 489 (1134)
Q Consensus 421 V~~l~~spd~~~las~s~dg~v~iwd~~~~~~-----~~~~~~l~~h~~~V~~v~~s~~~---~~~~l~s~s---~d~~i 489 (1134)
-.++++-.+| +|+.||..|.=.+|.+..... +....++ ..-++|..++..... .. .|++++ .+|++
T Consensus 329 ~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~-~i~~~sG~g~~gsL 405 (1158)
T 3ei3_A 329 AECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQG-QLVTCSGAFKEGSL 405 (1158)
T ss_dssp CSEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCC-EEEEEECCGGGCEE
T ss_pred ccEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCC-eEEEEECcCCCCeE
Confidence 3566666555 888888877767777654321 1212222 244788888876422 21 344443 46788
Q ss_pred EEEECCCC-ceeE--EecCCCcCEEEEeccc-cCCccEEEEecCCCcEEEEecCCCCceeeecCCC--CCeeEEEECc-C
Q 001163 490 KVWDAVTG-TKQY--IFEGHESPVYSICPHH-KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG--HSSTMMAYSA-D 562 (1134)
Q Consensus 490 ~iwd~~~~-~~~~--~~~~h~~~v~~~~~~~-~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~s~-~ 562 (1134)
++..--=+ +.+. .+.+ -..++.+.... +....+|+.+..+.+ +++.+... ........+ .....++... .
T Consensus 406 ~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l~ 482 (1158)
T 3ei3_A 406 RIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEETELMGFVDDQQTFFCGNVA 482 (1158)
T ss_dssp EEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEECCTTCCSSSCEEEEEEET
T ss_pred EEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-cccccccccccCCCCcEEEEEcC
Confidence 88752111 1111 2232 24556554321 122357777666666 45554321 122221111 1111222111 1
Q ss_pred CCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCC
Q 001163 563 GARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGL 642 (1134)
Q Consensus 563 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 642 (1134)
+..++-.... .|++.+...+..+..+....+..|...+.+. ..++.++ ++.+.++.++.+++..... ..-.
T Consensus 483 ~~~ivQVt~~-----~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~-~~l~ 553 (1158)
T 3ei3_A 483 HQQLIQITSA-----SVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISH-TEME 553 (1158)
T ss_dssp TTEEEEEESS-----CEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEE-EECS
T ss_pred CCeEEEEecC-----EEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecc-cCCC
Confidence 2344444432 2788887766677777655544566666553 4666665 6788888887664332221 1224
Q ss_pred CCcceEEEcCC------CcEEEEEEC-CCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccC
Q 001163 643 QASPCIRFNKE------GILLAVSTN-DNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTS 715 (1134)
Q Consensus 643 ~~v~~v~~sp~------~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 715 (1134)
..|.|+++.|. +.++++|.. |++++|+++.+.......-.+......
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~-------------------------- 607 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPR-------------------------- 607 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEE--------------------------
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCc--------------------------
Confidence 57899999863 479999996 999999999865322111110000000
Q ss_pred cCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCc-cceeccccCCccccccEEEEEEecCCceeeee
Q 001163 716 LGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEP-SQCRSLRLPDNLTAMRVSRLIYTNSGLAILAL 794 (1134)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~ 794 (1134)
...+..+ ....++..+-.||.+..+.++..... ...+...+ | ..++.=..|...|..-+.+
T Consensus 608 -------si~l~~~-------~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~L---G-~~pv~L~~~~~~~~~~V~a 669 (1158)
T 3ei3_A 608 -------SILMTTF-------ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTL---G-TQPTVLRTFRSLSTTNVFA 669 (1158)
T ss_dssp -------EEEEEEE-------TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEEC---C-SSCCEEEEEESSSCEEEEE
T ss_pred -------EEEEEEe-------CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEc---C-CCceEEEEEeeCCceeEEE
Confidence 0000011 01244566666676655555421110 00111111 0 1222222233333322222
Q ss_pred ccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCee-EEEEcCC--CCeEEEeeCCeEEEEEc
Q 001163 795 ASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVP-CFALSKN--DSYVMSASGGKISLFNM 871 (1134)
Q Consensus 795 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~-~v~~s~d--g~~la~~sdg~i~lwd~ 871 (1134)
..+.-..+|.-+ +......+. ...+. ...|+.. ..-++..+++.++|..+
T Consensus 670 ~s~rp~liy~~~-----------------------~~l~~s~l~----~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i 722 (1158)
T 3ei3_A 670 CSDRPTVIYSSN-----------------------HKLVFSNVN----LKEVNYMCPLNSDGYPDSLALANNSTLTIGTI 722 (1158)
T ss_dssp ESSSCEEEEESS-----------------------SSEEEEEBS----SSCCCEEEEECCSSSTTEEEEECSSCEEEEEE
T ss_pred ECCCCEEEEEcC-----------------------CceEEeccC----hHHhceEeccCcccCCCcEEEEcCCceEEEEe
Confidence 223333333111 111111111 11222 2334332 12344455666888776
Q ss_pred cCCe--EEEEecCCCCCeEEEEEcCCCCcEEEEEeCC-------------------------------------------
Q 001163 872 MTFK--TMTTFMPPPPAATFLAFHPQDNNIIAIGMED------------------------------------------- 906 (1134)
Q Consensus 872 ~~~~--~~~~~~~~~~~v~~l~~sp~~~~~la~g~~d------------------------------------------- 906 (1134)
++.+ .++++. -...+..++++| ..+.++++..+
T Consensus 723 ~~~~~~~~~~ip-L~~Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1158)
T 3ei3_A 723 DEIQKLHIRTVP-LYESPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSF 800 (1158)
T ss_dssp CCSSSEEEEEEE-CSSEEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------C
T ss_pred cccCCeeEEEEe-CCCCceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhc
Confidence 5432 223332 335678888888 55544443311
Q ss_pred ------CcEEEEEcccceEEEeccCc-cCceEEEE---EeeC-CCEEEEEe----------CCCcEEEEECCCCccccce
Q 001163 907 ------SSIQIYNVRVDEVKTKLKGH-QKRITGLA---FSNT-LNVLVSSG----------ADSQLCVWSTDGWEKQASK 965 (1134)
Q Consensus 907 ------g~i~iwd~~~~~~~~~l~~h-~~~V~~l~---~s~d-~~~l~s~s----------~Dg~i~iwd~~~~~~~~~~ 965 (1134)
..|++.|..+.+.+..+.-. ...+.+++ |..+ ..+++.|. ..|.|.++++..++.....
T Consensus 801 g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~ 880 (1158)
T 3ei3_A 801 GEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVA 880 (1158)
T ss_dssp CCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEE
T ss_pred CCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEE
Confidence 24667777666665544322 22344444 3222 46788775 3477999998743322111
Q ss_pred eeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEE
Q 001163 966 FLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVG 1045 (1134)
Q Consensus 966 ~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~ 1045 (1134)
...+ . +.+++++-- +| +|+++...+|++|++...+.+. .....+ ..|..+.....|.+++.|..-..|.
T Consensus 881 ~~~v-~------g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~ 949 (1158)
T 3ei3_A 881 EKEV-K------GAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELR-TECNHY-NNIMALYLKTKGDFILVGDLMRSVL 949 (1158)
T ss_dssp EEEE-S------SCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE-EEEEEC-CCSCEEEEEEETTEEEEEESSBCEE
T ss_pred EEEc-C------CcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEE-EEeecc-ccEEEEEEeccCCEEEEEEhhheEE
Confidence 1111 1 356766633 23 6777888999999998665433 211111 1233333434578888888777777
Q ss_pred Eeec--CCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163 1046 VLTA--STLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus 1046 vwd~--~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
++.. ..+++...-. .+ +...++++ .|- +...++.+..+|.|.+...+.
T Consensus 950 ~~~y~~~~~~L~~~a~--D~----~~~~vta~--~~l--d~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 950 LLAYKPMEGNFEEIAR--DF----NPNWMSAV--EIL--DDDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEEETTTTEEEEEEE--CC----SCBCEEEE--EEE--ETTEEEEEETTSEEEEEEECT
T ss_pred EEEEEcCCCeEEEEEe--ec----ccccEEEE--EEE--ccCcEEEEcCCCcEEEEecCC
Confidence 6554 3333321111 11 11224444 333 235888899999999998764
No 247
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.80 E-value=1.3e-06 Score=105.80 Aligned_cols=81 Identities=10% Similarity=0.111 Sum_probs=55.8
Q ss_pred CeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCce-EEEEEeeCCC-E
Q 001163 864 GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRI-TGLAFSNTLN-V 941 (1134)
Q Consensus 864 g~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~-~ 941 (1134)
|.|..||+.+++.+....... ......+.. .+.++++|+.||.++.||..+|+.+..++...+.. .-+.+..+|+ +
T Consensus 438 g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~y 515 (668)
T 1kv9_A 438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY 515 (668)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ceEEEEeCCCCcEEEEccCCC-CCcCceeEe-CCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEE
Confidence 789999999999988876332 222223333 45688899999999999999999998876543211 2345556776 4
Q ss_pred EEEEe
Q 001163 942 LVSSG 946 (1134)
Q Consensus 942 l~s~s 946 (1134)
++.++
T Consensus 516 va~~~ 520 (668)
T 1kv9_A 516 VAIMA 520 (668)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 44443
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.79 E-value=2.5e-06 Score=103.16 Aligned_cols=169 Identities=11% Similarity=0.125 Sum_probs=114.1
Q ss_pred EEEEcCCCCcEEEEEeCCCc-------------------EEEEEcccceEEEeccC--cc-------CceEEEEEeeCCC
Q 001163 889 FLAFHPQDNNIIAIGMEDSS-------------------IQIYNVRVDEVKTKLKG--HQ-------KRITGLAFSNTLN 940 (1134)
Q Consensus 889 ~l~~sp~~~~~la~g~~dg~-------------------i~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~~ 940 (1134)
.+++.| +..+++.++.++. |..+|..+|+.+..++. |. .+.....+..+|+
T Consensus 234 ~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~ 312 (668)
T 1kv9_A 234 SMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK 312 (668)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence 478888 6678888877763 99999999998877654 32 2333333445775
Q ss_pred ---EEEEEeCCCcEEEEECCCCccccceee-------ee--cCCC-------C-C-----------CCCCceEEEEcCCC
Q 001163 941 ---VLVSSGADSQLCVWSTDGWEKQASKFL-------TI--PNGR-------T-A-----------SALADTRVQFHLDQ 989 (1134)
Q Consensus 941 ---~l~s~s~Dg~i~iwd~~~~~~~~~~~~-------~~--~~~~-------~-~-----------~~~~v~~l~fs~dg 989 (1134)
.++.++.+|.++++|..+++....... .+ ..+. . . ....-..++++|+.
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 688999999999999999885411000 00 0000 0 0 00011236888887
Q ss_pred CEEEEE-------------------------------------eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCC
Q 001163 990 THLLAV-------------------------------------HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDS 1032 (1134)
Q Consensus 990 ~~l~~~-------------------------------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg 1032 (1134)
..+++. .++.|..||..+++.+..... ...+....++..|
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~~~~~t~g 469 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY---PTHWNGGTLSTAG 469 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETT
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC---CCCCcCceeEeCC
Confidence 776651 237899999999998766653 2233334555678
Q ss_pred CEEEEEecCCcEEEeecCCCcceeecCCC
Q 001163 1033 QSIYVAFEEGSVGVLTASTLRLRCRINPT 1061 (1134)
Q Consensus 1033 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~ 1061 (1134)
.++++++.|+.+++||..+|+.+.++...
T Consensus 470 g~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 470 NLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CEEEEECCcccchhhhhhcChhheEecCC
Confidence 89999999999999999999999887643
No 249
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.79 E-value=0.0017 Score=82.53 Aligned_cols=624 Identities=9% Similarity=0.043 Sum_probs=297.4
Q ss_pred CCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC----CCE
Q 001163 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD----GTL 432 (1134)
Q Consensus 357 ~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----~~~ 432 (1134)
..-+++++-.+| +++.|+..|.=.+|.+.....-....+.+.+ .-..-++|.+++.... ...
T Consensus 327 ~~~ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~------------~~~N~~PI~D~~v~d~~~~~~~~ 392 (1158)
T 3ei3_A 327 SIAECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME------------TFTNLGPIVDMCVVDLERQGQGQ 392 (1158)
T ss_dssp SCCSEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEEE------------EECCCCSEEEEEEECTTSSSCCE
T ss_pred cCccEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeEe------------eecCcCCceeEEEEccCCCCCCe
Confidence 334566666666 4678888887777777643210000001100 1123468888877542 235
Q ss_pred EEEEe---CCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEec---CCCceEEEEEeCCCeEEEEECCCCceeEEec--
Q 001163 433 FGVAY---SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY---PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE-- 504 (1134)
Q Consensus 433 las~s---~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~---~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-- 504 (1134)
|++++ .+|.+++..-.-+-.......+.+ -..++.+.... .+. +|+.+..+.+ .|+.+. ++.+....
T Consensus 393 i~~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~-~e~veev~~~ 467 (1158)
T 3ei3_A 393 LVTCSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLN-GEEVEETELM 467 (1158)
T ss_dssp EEEEECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEE-TTEEEEECCT
T ss_pred EEEEECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEe-CCcccccccc
Confidence 55443 467888875432221111112332 24456555432 223 5666666655 455542 22333221
Q ss_pred CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC-CCeeEEEECcCCCEEEEEecCCCCCeEEEEEe
Q 001163 505 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG-HSSTMMAYSADGARLFSCGTNKEGESYLVEWN 583 (1134)
Q Consensus 505 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 583 (1134)
+.......++...-++ ..++=.. ...|++.+.........+.... ..|...+.+. .+++.+. ++ .+..+.
T Consensus 468 gf~~~~~TL~~~~l~~-~~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~----~l~~fe 538 (1158)
T 3ei3_A 468 GFVDDQQTFFCGNVAH-QQLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GR----ALYYLQ 538 (1158)
T ss_dssp TCCSSSCEEEEEEETT-TEEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TT----EEEEEE
T ss_pred cccCCCCcEEEEEcCC-CeEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CC----EEEEEE
Confidence 1111111111111112 1222222 2345666654433443444333 3566665543 4555553 21 366666
Q ss_pred CCCCeeEEEecCCCCCceEEEEEcCC------CCEEEEEeC-CCeEEEEEcCCCceeEEEecCCCCCCcceEEEc--CCC
Q 001163 584 ESEGAVKRTYHGLGKRSVGVVQFDTT------KNRFLAAGD-EFMIKFWDMDNVNLLASIDADGGLQASPCIRFN--KEG 654 (1134)
Q Consensus 584 ~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s--p~~ 654 (1134)
+..++........-...|.++++.+. +.+++.|.. |++|+|+++.+.+.+....... .....++.+. ...
T Consensus 539 l~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~-~~~p~si~l~~~~~~ 617 (1158)
T 3ei3_A 539 IHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG-EIIPRSILMTTFESS 617 (1158)
T ss_dssp EETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS-SCCEEEEEEEEETTE
T ss_pred eeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC-CCCCcEEEEEEeCCC
Confidence 66554332222122337889988763 368888885 9999999999877665544321 1223333332 234
Q ss_pred cEEEEEECCCcEEEEEcc--CCceeEEE---eccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCC
Q 001163 655 ILLAVSTNDNGIKILANA--DGIRLLRT---VESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM 729 (1134)
Q Consensus 655 ~~l~~~~~dg~i~iw~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 729 (1134)
.+|.+|-.||.+.-+.+. ++ .+... ..|.. |+ ....+
T Consensus 618 ~~L~igl~dG~l~~~~~d~~tg-~l~d~r~~~LG~~------------------------------------pv-~L~~~ 659 (1158)
T 3ei3_A 618 HYLLCALGDGALFYFGLNIETG-LLSDRKKVTLGTQ------------------------------------PT-VLRTF 659 (1158)
T ss_dssp EEEEEEETTSEEEEEEECTTTC-CEEEEEEEECCSS------------------------------------CC-EEEEE
T ss_pred cEEEEEeCCCeEEEEEEcCCCC-ccccceeEEcCCC------------------------------------ce-EEEEE
Confidence 678889999988766554 23 11111 11100 00 00000
Q ss_pred CCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEE-EEEEecC--CceeeeeccCCeEEeeecC
Q 001163 730 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVS-RLIYTNS--GLAILALASNAVHKLWKWP 806 (1134)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~spd--g~~l~~~~~dg~i~vw~~~ 806 (1134)
... +...+.+.+++...++...+ .-....+ ....+. ...|+.. ..-++..+ ++.++|..++
T Consensus 660 ~~~------~~~~V~a~s~rp~liy~~~~---~l~~s~l------~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~ 723 (1158)
T 3ei3_A 660 RSL------STTNVFACSDRPTVIYSSNH---KLVFSNV------NLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTID 723 (1158)
T ss_dssp ESS------SCEEEEEESSSCEEEEESSS---SEEEEEB------SSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEEC
T ss_pred eeC------CceeEEEECCCCEEEEEcCC---ceEEecc------ChHHhceEeccCcccCCCcEEEEc-CCceEEEEec
Confidence 000 00111111112222221110 0000000 011121 2234321 12244333 3458887664
Q ss_pred CCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee------------------------
Q 001163 807 RNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS------------------------ 862 (1134)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s------------------------ 862 (1134)
.. ..-.... ++ -...++.++++|+.+.++.+.
T Consensus 724 ~~-------------------~~~~~~~--ip---L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1158)
T 3ei3_A 724 EI-------------------QKLHIRT--VP---LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQAL 779 (1158)
T ss_dssp CS-------------------SSEEEEE--EE---CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCS
T ss_pred cc-------------------CCeeEEE--Ee---CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhh
Confidence 21 0000111 11 234556666666655433321
Q ss_pred --------------------------CCeEEEEEccCCeEEEEecCCC-CCeEEEE---EcCCCCcEEEEEe--------
Q 001163 863 --------------------------GGKISLFNMMTFKTMTTFMPPP-PAATFLA---FHPQDNNIIAIGM-------- 904 (1134)
Q Consensus 863 --------------------------dg~i~lwd~~~~~~~~~~~~~~-~~v~~l~---~sp~~~~~la~g~-------- 904 (1134)
-+.|++.|..+++.+..+.-.. ..+.+++ |..+...++++|+
T Consensus 780 ~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~ 859 (1158)
T 3ei3_A 780 SSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEA 859 (1158)
T ss_dssp EEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCS
T ss_pred hhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCC
Confidence 1247788888888776655333 3355554 3332357899887
Q ss_pred --CCCcEEEEEcccceEEEec-cCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCce
Q 001163 905 --EDSSIQIYNVRVDEVKTKL-KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADT 981 (1134)
Q Consensus 905 --~dg~i~iwd~~~~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 981 (1134)
..|.|++|++..++..... ....++|++++-- +|++|+.. ..+|++|++...+...... ... ..+.
T Consensus 860 ~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~-~~~-------~~i~ 928 (1158)
T 3ei3_A 860 EPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTEC-NHY-------NNIM 928 (1158)
T ss_dssp SCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEE-EEC-------CCSC
T ss_pred CCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEe-ecc-------ccEE
Confidence 3578999999755432211 1245778887744 46544443 4789999998644222111 001 1133
Q ss_pred EEEEcCCCCEEEEEe-eceEEE--EeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcce---
Q 001163 982 RVQFHLDQTHLLAVH-ETQIAI--YEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLR--- 1055 (1134)
Q Consensus 982 ~l~fs~dg~~l~~~~-d~~i~i--wd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~--- 1055 (1134)
.+.....+.++++|. -..|.+ |+....+ +..+...-+...++++.|-.++ .++.+..+|.+.+.........
T Consensus 929 ~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~-L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~~~~~~~~ 1006 (1158)
T 3ei3_A 929 ALYLKTKGDFILVGDLMRSVLLLAYKPMEGN-FEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDSAATTDEE 1006 (1158)
T ss_dssp EEEEEEETTEEEEEESSBCEEEEEEETTTTE-EEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECTTCCSTTG
T ss_pred EEEEeccCCEEEEEEhhheEEEEEEEcCCCe-EEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCCCCCCccc
Confidence 334444567777762 244544 4444332 2223223457789999998665 5666889999999987652110
Q ss_pred -eecCCCcccCCCCCCCceeEEE-EecCCC--------CCEEEEEecCCcEEEEeCC
Q 001163 1056 -CRINPTAYLPTNPSLRVYPLVI-AGNPTD--------PNQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus 1056 -~~~~~~~~~~~~h~~~v~~~~~-~~~p~~--------~~~l~s~~~Dg~v~vW~~~ 1102 (1134)
.++.....+- ....|+.+.- +..+.. ...++.++.+|+|-+.-.-
T Consensus 1007 ~~~L~~~~~fh--lG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~pl 1061 (1158)
T 3ei3_A 1007 RQHLQEVGLFH--LGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSL 1061 (1158)
T ss_dssp GGBEEEEEEEE--CSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEEE
T ss_pred cceeeeEEEEe--CCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEEc
Confidence 1111000000 1133444321 122211 2458889999999877554
No 250
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.78 E-value=0.00099 Score=79.18 Aligned_cols=533 Identities=10% Similarity=0.005 Sum_probs=273.4
Q ss_pred eEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEE-eCCCEEEEEEcc
Q 001163 370 ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA-YSKHIVHLYTYH 448 (1134)
Q Consensus 370 ~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~-s~dg~v~iwd~~ 448 (1134)
+|+++ ..+.|+..|+.+....... ....-..+..|+|++++..|..+ ..++.|..+++.
T Consensus 8 ~Ll~s--~~~~I~~i~l~~~~~~~~~------------------~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~ 67 (628)
T 4a0p_A 8 FLLFS--RRADIRRISLETNNNNVAI------------------PLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN 67 (628)
T ss_dssp EEEEE--ETTEEEEEESSCTTCEEEC------------------CCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEE--eCCcEEEEECCCCCcceEE------------------EcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence 34443 4567888888765422110 11123468899999976666554 567889999987
Q ss_pred CCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEe-
Q 001163 449 GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST- 527 (1134)
Q Consensus 449 ~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~- 527 (1134)
.... .. .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....|++.+.. |.++++-
T Consensus 68 g~~~-~~--v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~-G~lY~tD~ 142 (628)
T 4a0p_A 68 GSAL-EH--VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAE-GFMYWTEW 142 (628)
T ss_dssp SCSC-EE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTT-TEEEEEEC
T ss_pred CCCc-EE--EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCC-CeEEEeCC
Confidence 6532 21 12222245678999877765 45566667899999976543322232334456788886543 3444443
Q ss_pred cCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEc
Q 001163 528 ATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFD 607 (1134)
Q Consensus 528 s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~ 607 (1134)
+..+.|...+++......... .......++++++++.|+.+-. +...|...|+..... ..+..... ....+++.
T Consensus 143 g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l~-~P~glav~ 216 (628)
T 4a0p_A 143 GGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDLP-HPFGLTQY 216 (628)
T ss_dssp SSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECCS-CEEEEEEE
T ss_pred CCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccCC-CceEEEEE
Confidence 235678778777554433332 3446789999998888887653 244688899865433 23332222 44567765
Q ss_pred CCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceE-EEcCCCcEEEEEECCCcEEEEEccCC---ceeEEEec
Q 001163 608 TTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCI-RFNKEGILLAVSTNDNGIKILANADG---IRLLRTVE 682 (1134)
Q Consensus 608 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~sp~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~ 682 (1134)
. ..++.+. ..+.|...|..+++....+... ......+ .+++..+. + .+... ..++ ..++....
T Consensus 217 ~--~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~--~~~p~~i~v~~~~~q~---~-~n~C~----~~ng~C~~~C~~~~~ 284 (628)
T 4a0p_A 217 Q--DYIYWTDWSRRSIERANKTSGQNRTIIQGH--LDYVMDILVFHSSRQS---G-WNECA----SSNGHCSHLCLAVPV 284 (628)
T ss_dssp T--TEEEEEETTTTEEEEEETTTCCSCEEEECS--CCSCCEEEEECGGGSC---C-CCTTT----TTGGGCSSEEEEETT
T ss_pred C--CEEEEecCCCCEEEEEECCCCCceEEEecC--CCCcceeeeeeecccc---c-ceEec----cCCCCcchhhhcCCC
Confidence 4 3455544 6788999998887766665432 1122222 22221110 0 00000 0000 00000000
Q ss_pred cCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccC-cccccccccccccccceeeecccCC
Q 001163 683 SRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNF-TDVKPKIADEAVEKSRIWKLTEITE 761 (1134)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~iw~~~~~~~ 761 (1134)
+ ...+ ..|.+ ..+..+++.. +....++. +....|+-..+.....
T Consensus 285 ~-----------~~~C-------------~C~~g----------~~l~~d~~~C~~~~~~Ll~-s~~~~i~~i~l~~~~~ 329 (628)
T 4a0p_A 285 G-----------GFVC-------------GCPAH----------YSLNADNRTCSAPTTFLLF-SQKSAINRMVIDEQQS 329 (628)
T ss_dssp T-----------EEEE-------------ECSTT----------CEECTTSSCEECCSSEEEE-EETTEEEEECCCTTCC
T ss_pred C-----------CeeE-------------EcCCC----------cEecccCCcCccccceeee-eccceEEEEecccccC
Confidence 0 0000 00000 0000111110 01111221 1223333333321110
Q ss_pred ccceeccccCCccccccEEEEEEecCCceeeeec-cCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCC
Q 001163 762 PSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA-SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDT 840 (1134)
Q Consensus 762 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 840 (1134)
.. ..++. ..-..+.+++|.+.+..|+.+. ..+.|..++++.... ..++.....+.
T Consensus 330 ~~----~~l~~-~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~-------------------~~v~~~~~~~~ 385 (628)
T 4a0p_A 330 PD----IILPI-HSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG-------------------FTVVVSSVPSQ 385 (628)
T ss_dssp CC----EECCC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------------------EEEEC------
T ss_pred ce----EEEEe-hhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCc-------------------eEEEEcccccc
Confidence 00 11111 1234578899998766555544 356777665432100 00110000000
Q ss_pred CCCCCeeEEEEcCCCCeEEEee--CCeEEEEEccCCeEEEEe-cCCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEEcc
Q 001163 841 NPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTF-MPPPPAATFLAFHPQDNNIIAIGMEDS--SIQIYNVR 915 (1134)
Q Consensus 841 ~h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~~la~g~~dg--~i~iwd~~ 915 (1134)
.....+..+++...++.|..+. .+.|.+.++. |+....+ .........+++.|..|.++.+-.... .|...+++
T Consensus 386 ~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d 464 (628)
T 4a0p_A 386 NLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD 464 (628)
T ss_dssp --CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT
T ss_pred cccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC
Confidence 0234578999999877766554 5789999985 4444443 334567899999994555444433332 46656655
Q ss_pred cceEEEeccCccCceEEEEEeeCCCEEEEEe-CCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE
Q 001163 916 VDEVKTKLKGHQKRITGLAFSNTLNVLVSSG-ADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA 994 (1134)
Q Consensus 916 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~ 994 (1134)
...........-...+.|++.+++..|..+. ..+.|...+++.... ..+.. ... .....+++.. ..|..
T Consensus 465 G~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r---~~~~~--~~~---~~P~glav~~--~~ly~ 534 (628)
T 4a0p_A 465 GTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANR---IVLED--SNI---LQPVGLTVFE--NWLYW 534 (628)
T ss_dssp SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEEC--SSC---SCEEEEEEET--TEEEE
T ss_pred CCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCce---EEEEc--CCC---CCcEEEEEEC--CEEEE
Confidence 3222222222234568999999877777664 457899999876431 11111 111 2345666644 34444
Q ss_pred E--eeceEEEEeCCCcccceeec
Q 001163 995 V--HETQIAIYEAPKLECLKQFV 1015 (1134)
Q Consensus 995 ~--~d~~i~iwd~~~~~~~~~~~ 1015 (1134)
+ ..+.|...|..+|+....+.
T Consensus 535 tD~~~~~i~~~~k~~G~~~~~i~ 557 (628)
T 4a0p_A 535 IDKQQQMIEKIDMTGREGRTKVQ 557 (628)
T ss_dssp EETTTTEEEEEETTSSSCCEEEE
T ss_pred EECCCCeEEEEECcCCCCcEEEe
Confidence 3 45677777777776554443
No 251
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.76 E-value=1.9e-05 Score=83.81 Aligned_cols=224 Identities=12% Similarity=0.052 Sum_probs=142.0
Q ss_pred CCEEEEEEcCCCCEEEEE-eCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC
Q 001163 419 ASVNRVMWSPDGTLFGVA-YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 497 (1134)
Q Consensus 419 ~~V~~l~~spd~~~las~-s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~ 497 (1134)
..+.+++|++++..|..+ ..++.|..++..++.... .+.........+++++++.. ++++....+.|.+++....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 467899999976655554 457899999998654221 12222346789999997764 4556666789999997643
Q ss_pred ceeEEecCCCcCEEEEeccccCCccEEEEecC--CCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCC
Q 001163 498 TKQYIFEGHESPVYSICPHHKENIQFIFSTAT--DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG 575 (1134)
Q Consensus 498 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 575 (1134)
...............+++++.. +.++++... .+.|..++++.................+++++++..|+.+.. +
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~~-g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~---~ 187 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---G 187 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---T
T ss_pred CEEEEEECCCCCccEEEEeeCC-CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---C
Confidence 3222222222456788886533 244444433 468888887654333222223345778999999888877653 2
Q ss_pred CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCC
Q 001163 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654 (1134)
Q Consensus 576 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 654 (1134)
...|..+|.........+.... ....++.. +..++.+. ..+.|.++|..+++.+..+.... ......+++.|++
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~~~--~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~~ 262 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEGLQ--YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALSQ 262 (267)
T ss_dssp TTEEEEEETTEEEEEEEEECCC--SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECSC
T ss_pred CCEEEEEecCCCceEEEecCCC--CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCcc
Confidence 4469999987654444433322 34556654 45666555 67899999999999988886422 2235678888876
Q ss_pred c
Q 001163 655 I 655 (1134)
Q Consensus 655 ~ 655 (1134)
.
T Consensus 263 ~ 263 (267)
T 1npe_A 263 C 263 (267)
T ss_dssp C
T ss_pred C
Confidence 3
No 252
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.71 E-value=1.4e-06 Score=90.14 Aligned_cols=217 Identities=10% Similarity=0.022 Sum_probs=145.5
Q ss_pred CeEEEEecCCCC--CeEEEEEcCCCCcEEEEEeC--CCcEEEEEcccceEEEeccCccC-ceEEEEEeeCCCEEE-EEeC
Q 001163 874 FKTMTTFMPPPP--AATFLAFHPQDNNIIAIGME--DSSIQIYNVRVDEVKTKLKGHQK-RITGLAFSNTLNVLV-SSGA 947 (1134)
Q Consensus 874 ~~~~~~~~~~~~--~v~~l~~sp~~~~~la~g~~--dg~i~iwd~~~~~~~~~l~~h~~-~V~~l~~s~d~~~l~-s~s~ 947 (1134)
.+.+.++. |.. ....++|++ ++.++++.+. ++.|+++|+.+++.+..+.-... ....+++. ++.|+ +.-.
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 45566664 443 368999999 6655555443 57999999999998887653221 12245554 54554 4456
Q ss_pred CCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCcccceeeccCCCc---cCE
Q 001163 948 DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPREAS---GPI 1023 (1134)
Q Consensus 948 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~---~~v 1023 (1134)
++.+.++|..+.+... .+..+ .. ....+++||+.|+++ .+++|.++|..+.+.+..+....+. ..+
T Consensus 85 ~~~v~viD~~t~~v~~----~i~~g-~~-----~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ 154 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIK----NFTHQ-MK-----DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL 154 (266)
T ss_dssp CSEEEEEETTTTEEEE----EEECC-SS-----SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred CCEEEEEECCCCcEEE----EEECC-CC-----CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence 7899999999866332 22222 11 124477788888775 4678999999999988887743321 246
Q ss_pred EEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCccc----CCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEE
Q 001163 1024 THATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYL----PTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYII 1099 (1134)
Q Consensus 1024 ~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~----~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW 1099 (1134)
..+.|. ||...+....++.|.+.|..+++.+..+...... ...+.....+..++|+|+...+++++...+.|++-
T Consensus 155 nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 155 NELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred eeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 788888 7765555556789999999999998887743211 01122223456679999656678888889999999
Q ss_pred eCCCCC
Q 001163 1100 EPLEAE 1105 (1134)
Q Consensus 1100 ~~~~~~ 1105 (1134)
++...+
T Consensus 234 ~l~~~~ 239 (266)
T 2iwa_A 234 KLHLVR 239 (266)
T ss_dssp EEEECC
T ss_pred EEeccc
Confidence 987643
No 253
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.71 E-value=1.6e-06 Score=89.70 Aligned_cols=201 Identities=10% Similarity=0.048 Sum_probs=138.7
Q ss_pred CeeEEEEcCCCCeEEEee---CCeEEEEEccCCeEEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEE
Q 001163 845 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMTTFMPPP-PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK 920 (1134)
Q Consensus 845 ~v~~v~~s~dg~~la~~s---dg~i~lwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~ 920 (1134)
....++|++|+.+.++.+ ++.|+++|+.+++.+..+.... .....+++. ++++.++.-.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 457899999876555543 4789999999999999875322 233456665 4456666667889999999999999
Q ss_pred EeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eece
Q 001163 921 TKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQ 999 (1134)
Q Consensus 921 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~ 999 (1134)
.++..-... ...+++||+.|+.+..+++|.++|..+.+... .+.+.....+ ...+..+.|. ||+..+.. .++.
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~--~I~Vg~~~~p-~~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIK--KHNVKYNGHR-VIRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEE--EEECEETTEE-CCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEE--EEEECCCCcc-cccceeEEEE-CCEEEEecCCCCe
Confidence 887533121 24466788888877778899999998866433 2222211100 0135677888 77544433 5689
Q ss_pred EEEEeCCCcccceeeccCCC-----------ccCEEEEEEccCCCEEE-EEecCCcEEEeecCCCc
Q 001163 1000 IAIYEAPKLECLKQFVPREA-----------SGPITHATYSCDSQSIY-VAFEEGSVGVLTASTLR 1053 (1134)
Q Consensus 1000 i~iwd~~~~~~~~~~~~~~h-----------~~~v~~~~~s~dg~~l~-s~s~Dg~i~vwd~~~~~ 1053 (1134)
|.+.|..+++.+..+...+- ......++|+|+++.|+ ++...+.+.+.++....
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 99999999999888864210 13568999999997655 55567888888876643
No 254
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.67 E-value=8.1e-06 Score=96.17 Aligned_cols=167 Identities=12% Similarity=0.103 Sum_probs=104.8
Q ss_pred EEEEcCCCCcEEEEEeCC----------------CcEEEEEcccceEEEeccCcc----------CceEEEEEe-eCC--
Q 001163 889 FLAFHPQDNNIIAIGMED----------------SSIQIYNVRVDEVKTKLKGHQ----------KRITGLAFS-NTL-- 939 (1134)
Q Consensus 889 ~l~~sp~~~~~la~g~~d----------------g~i~iwd~~~~~~~~~l~~h~----------~~V~~l~~s-~d~-- 939 (1134)
.+++.+ ...+|+.++.+ +.|.-+|..+|+.+..++... .++. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 356667 55577777655 379999999999887665421 1121 2222 467
Q ss_pred -CEEEEEeCCCcEEEEECCCCccccceeee--------e--cCCC---------------------CCCCCCceEEEEcC
Q 001163 940 -NVLVSSGADSQLCVWSTDGWEKQASKFLT--------I--PNGR---------------------TASALADTRVQFHL 987 (1134)
Q Consensus 940 -~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--------~--~~~~---------------------~~~~~~v~~l~fs~ 987 (1134)
+.++.++.+|.+.++|..+++..-..... + ..+. ......-..++++|
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 56778899999999999988753211100 0 0000 00001113467777
Q ss_pred CCCEEEEE----------------------------------------eeceEEEEeCCCcccceeeccCCCccCEEEEE
Q 001163 988 DQTHLLAV----------------------------------------HETQIAIYEAPKLECLKQFVPREASGPITHAT 1027 (1134)
Q Consensus 988 dg~~l~~~----------------------------------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~ 1027 (1134)
+..++++. ..+.|.-||+.+++.+.+.... .++.+-.
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~ 479 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER---FAVWGGT 479 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES---SCCCSBC
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC---CCccCcc
Confidence 77666542 2367888999998877665421 1122112
Q ss_pred EccCCCEEEEEecCCcEEEeecCCCcceeecCC
Q 001163 1028 YSCDSQSIYVAFEEGSVGVLTASTLRLRCRINP 1060 (1134)
Q Consensus 1028 ~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~ 1060 (1134)
+...|.+++.++.|+.++.||..+|+.+.++..
T Consensus 480 ~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 480 MATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 334677888899999999999999999988763
No 255
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.62 E-value=6.3e-05 Score=79.64 Aligned_cols=242 Identities=12% Similarity=0.023 Sum_probs=146.8
Q ss_pred CEEEEEeCCCEEEEEEccCCceee--eeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCc
Q 001163 431 TLFGVAYSKHIVHLYTYHGGDELR--NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES 508 (1134)
Q Consensus 431 ~~las~s~dg~v~iwd~~~~~~~~--~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 508 (1134)
.+|..+.. +.|+.+++.+..... ....+......+..++|++++.. ++++...++.|..+|...+.....+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 45555543 478888887654210 00012222345789999997764 455666678999999876554333333334
Q ss_pred CEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe
Q 001163 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 588 (1134)
Q Consensus 509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 588 (1134)
....+++++.. +.++++-...+.|.+++++.................++++|++..|+.+.... ....|..+++....
T Consensus 80 ~p~~ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-~~~~I~~~~~dg~~ 157 (267)
T 1npe_A 80 SPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGTN 157 (267)
T ss_dssp CEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSCC
T ss_pred CccEEEEEecC-CeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC-CCcEEEEEecCCCC
Confidence 67788886533 35666666778999999875433333322224568899999777766654321 13468888875432
Q ss_pred eEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEE
Q 001163 589 VKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK 667 (1134)
Q Consensus 589 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~ 667 (1134)
...+..........+++++++..|+.+. ..+.|.++|.........+.. ......++.. ++.++++....+.|.
T Consensus 158 -~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~---~~~P~gi~~d-~~~lyva~~~~~~v~ 232 (267)
T 1npe_A 158 -RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG---LQYPFAVTSY-GKNLYYTDWKTNSVI 232 (267)
T ss_dssp -CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC---CCSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred -cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC---CCCceEEEEe-CCEEEEEECCCCeEE
Confidence 2222211222577899999887776666 668999999986554444432 1223456654 344444444568999
Q ss_pred EEEccCCceeEEEec
Q 001163 668 ILANADGIRLLRTVE 682 (1134)
Q Consensus 668 iw~~~~~~~~~~~~~ 682 (1134)
.++..++ .....+.
T Consensus 233 ~~d~~~g-~~~~~i~ 246 (267)
T 1npe_A 233 AMDLAIS-KEMDTFH 246 (267)
T ss_dssp EEETTTT-EEEEEEC
T ss_pred EEeCCCC-CceEEEc
Confidence 9998887 4455543
No 256
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.60 E-value=1.1e-05 Score=95.30 Aligned_cols=85 Identities=9% Similarity=0.102 Sum_probs=54.3
Q ss_pred CCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEE
Q 001163 905 EDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQ 984 (1134)
Q Consensus 905 ~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 984 (1134)
.+|.|..||+.+|+.+.++... ..+....+...+..++.++.|+.|+.||..+++..-. .....+.. ..-+.
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~--~~~~~~~~-----~~p~~ 513 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN--FKMPSGGI-----GSPMT 513 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE--EECSSCCC-----SCCEE
T ss_pred CCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEE--EeCCCCcE-----eeeEE
Confidence 3578999999999988776532 2333333444567888899999999999999874321 22222111 12244
Q ss_pred EcCCCCEEEEEee
Q 001163 985 FHLDQTHLLAVHE 997 (1134)
Q Consensus 985 fs~dg~~l~~~~d 997 (1134)
+..+|+.++...+
T Consensus 514 ~~~~G~~yv~~~~ 526 (571)
T 2ad6_A 514 YSFKGKQYIGSMY 526 (571)
T ss_dssp EEETTEEEEEEEE
T ss_pred EEECCEEEEEEEC
Confidence 6688887666443
No 257
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.59 E-value=0.0046 Score=76.34 Aligned_cols=572 Identities=12% Similarity=0.096 Sum_probs=298.4
Q ss_pred CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001163 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (1134)
Q Consensus 356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las 435 (1134)
...|+++.-..+|... .|+.+| +..||-..-+. +... .......|.++....+|. |-.
T Consensus 21 ~n~V~~I~qD~~G~lW--igT~~G-L~ryDG~~~~~--------~~~~----------~~~~~~~i~~i~~d~~g~-lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIW--IGSNKG-LFSYDGYSTQQ--------HFTY----------GENNNTRIYCGVIIDNTY-LYM 78 (758)
T ss_dssp CCCEEEEEECTTSCEE--EEESSC-EEEECSSCEEE--------CSCT----------TSTTSSCEEEEEEETTTE-EEE
T ss_pred cceEEEEEECCCCCEE--EEECCC-ccccCCCceEE--------EEcc----------CCCCCceEEEEEEcCCCc-EEE
Confidence 4578999999999744 455666 56677322110 0000 011245799988877764 555
Q ss_pred EeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEec-----CCCcCE
Q 001163 436 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE-----GHESPV 510 (1134)
Q Consensus 436 ~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-----~h~~~v 510 (1134)
|+.+| +..||..+.+- .. ........|.++.. .+|. |..++.+ -+..+|..+++... +. .....|
T Consensus 79 gT~~G-l~~yd~~~~~f-~~--~~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i 148 (758)
T 3ott_A 79 GTDNG-ILVYNYRADRY-EQ--PETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTI 148 (758)
T ss_dssp EETTE-EEEEETTTTEE-CC--CSCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEEE-ECHHHHCCSCSCE
T ss_pred EeCCC-eEEEeCCCCEE-EC--cccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEEE-eccCCCCcCCCeE
Confidence 56666 78999887542 21 11112335777654 3553 4445554 68889987765432 21 123457
Q ss_pred EEEeccccCCccEEEEecCCCcEEEEecCCCCceee-ecC----CCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC
Q 001163 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-YDA----PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 585 (1134)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~----~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 585 (1134)
.++.. +.++.+. .++.+ -+..++......... ... ....|.++...+++..|..+... -+..+|..
T Consensus 149 ~~i~~--d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~-----Gl~~~~~~ 219 (758)
T 3ott_A 149 YSIIR--TKDNQIY-VGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEG-----YLFQYFPS 219 (758)
T ss_dssp EEEEE--CTTCCEE-EEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEE-----EEEEEETT
T ss_pred EEEEE--cCCCCEE-EEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECC-----CCeEEcCC
Confidence 77764 3344444 45544 466677654332211 111 12247788777777654444422 28889988
Q ss_pred CCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCC-----CCCCcceEEEcCCCcEEEEE
Q 001163 586 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG-----GLQASPCIRFNKEGILLAVS 660 (1134)
Q Consensus 586 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~sp~~~~l~~~ 660 (1134)
+++.... .......|.++....++...+ |+. +-+.+++..+++......... ....|.++....+|.+-+ |
T Consensus 220 ~~~~~~~-~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-G 295 (758)
T 3ott_A 220 TGQIKQT-EAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-G 295 (758)
T ss_dssp TTEEEEE-EEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-E
T ss_pred CCeEEec-cCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-E
Confidence 7754332 111122577787777776554 444 458888887665432221100 123466777666665443 4
Q ss_pred ECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccc
Q 001163 661 TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVK 740 (1134)
Q Consensus 661 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1134)
+..| +.++.... ....+.
T Consensus 296 T~~G-l~~~~~~~---~~~~~~---------------------------------------------------------- 313 (758)
T 3ott_A 296 TDYG-ISLSRYNS---ALQFIP---------------------------------------------------------- 313 (758)
T ss_dssp ESSS-EEEECCCC----CEEEE----------------------------------------------------------
T ss_pred eCCc-ccccccCC---ceeEEe----------------------------------------------------------
Confidence 4455 43332111 000000
Q ss_pred cccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCC
Q 001163 741 PKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQ 820 (1134)
Q Consensus 741 ~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 820 (1134)
... .........|.++....+|..-+. +.+|..+ ++...... .
T Consensus 314 ---------------~~~-----------~~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl~~-~~~~~~~~---------~ 356 (758)
T 3ott_A 314 ---------------ISQ-----------ITGTGDGNQFYSLFRDSKGFYWFG-GANGLIR-FTDPAGER---------H 356 (758)
T ss_dssp ---------------HHH-----------HSCSCCCCBEEEEEECTTCCEEEE-ETTEEEE-ESCTTSSC---------C
T ss_pred ---------------ccc-----------CCCCCCCceEEEEEEcCCCCEEEe-eCCccee-eccccccc---------c
Confidence 000 000002245777777777775554 4455443 33221000 0
Q ss_pred CCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEe--cC----CCCCeEEEEEcC
Q 001163 821 APQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTF--MP----PPPAATFLAFHP 894 (1134)
Q Consensus 821 ~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~--~~----~~~~v~~l~~sp 894 (1134)
.+..+...... ..+ ....|.++.-..+|.+.+.. ++-|..||..+++...-. .. ....|.++...+
T Consensus 357 ~~~~~~~~~~~---~~l----~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~ 428 (758)
T 3ott_A 357 DAIWYRMGDKT---YPL----SHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT 428 (758)
T ss_dssp CCEEECTTCSS---SCC----SCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT
T ss_pred eeEEeccCCcC---CCC----CCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC
Confidence 00011100000 001 23568899988888876644 668999998876544321 11 124578888776
Q ss_pred CCCcEEEEEeCCCcEEEEEcccc------eEE--Eecc---C-ccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccc
Q 001163 895 QDNNIIAIGMEDSSIQIYNVRVD------EVK--TKLK---G-HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQ 962 (1134)
Q Consensus 895 ~~~~~la~g~~dg~i~iwd~~~~------~~~--~~l~---~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~ 962 (1134)
++.+ -.|+..+-+.+++..+. ... ..+. + ....|.++...++|.+.+.++..+-|..+|..+++..
T Consensus 429 -~g~l-WigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~ 506 (758)
T 3ott_A 429 -AGQL-WISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVT 506 (758)
T ss_dssp -TSEE-EEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEE
T ss_pred -CCCE-EEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceE
Confidence 5654 44666667888886531 111 1111 1 1235889998888987764444455888998765421
Q ss_pred cceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCC-CccCEEEEEEccCCCEEEEEecC
Q 001163 963 ASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPRE-ASGPITHATYSCDSQSIYVAFEE 1041 (1134)
Q Consensus 963 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~s~s~D 1041 (1134)
............+.++....+|.+-+.+. +-+..|+..+++... +...+ ....|.++... +|.+. .++.+
T Consensus 507 -----~~~~~~~~~~~~~~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~-~~~~gl~~~~i~~i~~~-~g~lW-i~t~~ 577 (758)
T 3ott_A 507 -----KLFADELTGEKSPNYLLCDEDGLLWVGFH-GGVMRINPKDESQQS-ISFGSFSNNEILSMTCV-KNSIW-VSTTN 577 (758)
T ss_dssp -----EECTTTSCGGGCEEEEEECTTSCEEEEET-TEEEEECC--CCCCB-CCCCC---CCEEEEEEE-TTEEE-EEESS
T ss_pred -----EecCCCcCCCcccceEEECCCCCEEEEec-CceEEEecCCCceEE-ecccCCCccceEEEEEC-CCCEE-EECCC
Confidence 22111111113577888888888766554 558888877654322 11111 13568888763 66544 45555
Q ss_pred CcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163 1042 GSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus 1042 g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
| +..||..+.+... +. ++. ..+... .+... ...|..|+.+| +..+++..
T Consensus 578 G-l~~~~~~~~~~~~-~~----~~~---~~~~~~--~~~~~-~G~l~fG~~~G-l~~f~p~~ 626 (758)
T 3ott_A 578 G-LWIIDRKTMDARQ-QN----MTN---KRFTSL--LFDPK-EDCVYLGGADG-FGISHSNL 626 (758)
T ss_dssp C-EEEEETTTCCEEE-C------CC---CCCSEE--EEETT-TTEEEEECBSE-EEEEEC--
T ss_pred C-eEEEcCCCceeEE-ec----CCC---Cceeee--EEECC-CCcEEEecCCc-eEEEChhh
Confidence 6 7788888766432 11 111 122222 22222 34677788888 55566654
No 258
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.59 E-value=2.4e-06 Score=87.02 Aligned_cols=184 Identities=11% Similarity=0.118 Sum_probs=127.0
Q ss_pred CeeEEEEcCCCCeEEEee-CC--eEEEEEccCCeEEEEecCCCCCe--EEEEEcCCCCcEEEEEeCCCcEEEEEcccceE
Q 001163 845 AVPCFALSKNDSYVMSAS-GG--KISLFNMMTFKTMTTFMPPPPAA--TFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV 919 (1134)
Q Consensus 845 ~v~~v~~s~dg~~la~~s-dg--~i~lwd~~~~~~~~~~~~~~~~v--~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~ 919 (1134)
-...+.|+ ++.+..+.+ +| .|+++|+.+++.+..+.... .. -.+++. ++++.+..-.++.+.+||..+.+.
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcE
Confidence 34788998 666555555 55 79999999999999886433 33 335554 445555556688999999999999
Q ss_pred EEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecC-CCCCCCCCceEEEEcCCCCEEEEE-ee
Q 001163 920 KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPN-GRTASALADTRVQFHLDQTHLLAV-HE 997 (1134)
Q Consensus 920 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~fs~dg~~l~~~-~d 997 (1134)
+.++.... ....+++|++.|+.+..++.|.++|..+.+.... +.+.. +... ..+..+.+. +|+..+.. .+
T Consensus 120 ~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~--I~V~~~g~~~--~~lNELe~~-~G~lyan~w~~ 191 (262)
T 3nol_A 120 VRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRT--ITVTAHGEEL--PELNELEWV-DGEIFANVWQT 191 (262)
T ss_dssp EEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEE--EECEETTEEC--CCEEEEEEE-TTEEEEEETTS
T ss_pred EEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEE--EEeccCCccc--cccceeEEE-CCEEEEEEccC
Confidence 98887532 2234446788887776678899999998664432 22221 1111 224456776 67644444 57
Q ss_pred ceEEEEeCCCcccceeeccCCC----------ccCEEEEEEccCCCEEEEEec
Q 001163 998 TQIAIYEAPKLECLKQFVPREA----------SGPITHATYSCDSQSIYVAFE 1040 (1134)
Q Consensus 998 ~~i~iwd~~~~~~~~~~~~~~h----------~~~v~~~~~s~dg~~l~s~s~ 1040 (1134)
+.|.+.|..+++.+..+...+- ..-...|||+|+++.|++.+.
T Consensus 192 ~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 192 NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 8999999999999888764321 235688999999998887764
No 259
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.57 E-value=0.0052 Score=75.88 Aligned_cols=529 Identities=10% Similarity=0.071 Sum_probs=273.1
Q ss_pred CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001163 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (1134)
Q Consensus 356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las 435 (1134)
...|.++....+|. | -.|+.+| +..||..+++.... .......|.++.. .+| .|-.
T Consensus 62 ~~~i~~i~~d~~g~-l-WigT~~G-l~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY-L-YMGTDNG-ILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWL 117 (758)
T ss_dssp SSCEEEEEEETTTE-E-EEEETTE-EEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEE
T ss_pred CceEEEEEEcCCCc-E-EEEeCCC-eEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEE
Confidence 34688988888886 3 4555555 78999876532110 0112235777765 355 4555
Q ss_pred EeCCCEEEEEEccCCceeeeeeee-e-cCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEE-ecC----CCc
Q 001163 436 AYSKHIVHLYTYHGGDELRNHLEI-E-AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI-FEG----HES 508 (1134)
Q Consensus 436 ~s~dg~v~iwd~~~~~~~~~~~~l-~-~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~----h~~ 508 (1134)
|+.+ -+..+|..+++. ...... . -....|.++....+|. |..|+.+ -+..+|..+++.... ... ...
T Consensus 118 gt~~-Gl~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~---lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~ 191 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKL-TSFDTRRNGLPNNTIYSIIRTKDNQ---IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNL 191 (758)
T ss_dssp EETT-EEEEEETTTCCE-EEECHHHHCCSCSCEEEEEECTTCC---EEEEETT-EEEEEETTTTEEEEECCCCCTTCSSC
T ss_pred EcCC-cceeEeCCCCeE-EEeccCCCCcCCCeEEEEEEcCCCC---EEEEeCC-CHhhCccCCCceEEecCCCccccccc
Confidence 6666 488889876552 211000 0 1234688888877776 3334444 577888776654321 111 122
Q ss_pred CEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe
Q 001163 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 588 (1134)
Q Consensus 509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 588 (1134)
.|.++.. +.++..|..|+. +-+..+|..+.............|.++....+|...+.. .++ +.+++..+++
T Consensus 192 ~i~~i~~--d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~G-----l~~~~~~~~~ 262 (758)
T 3ott_A 192 FVNSLLE--DTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DNG-----LYVYHNDTTP 262 (758)
T ss_dssp CEEEEEE--ETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TTE-----EEEECCTTSC
T ss_pred eeEEEEE--ECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CCc-----eeEEecCCCc
Confidence 4777765 333344555554 457778766433221111123357788888888766654 222 8888887765
Q ss_pred eEEEecC------CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEec-----CCCCCCcceEEEcCCCcEE
Q 001163 589 VKRTYHG------LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA-----DGGLQASPCIRFNKEGILL 657 (1134)
Q Consensus 589 ~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~v~~sp~~~~l 657 (1134)
....... .....|.++....+|... .|+..| +.++.... ....+.. ......|.++.-..+|.+-
T Consensus 263 ~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-iGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW 338 (758)
T 3ott_A 263 LQHIIHDSRNIQSLTNNIIWNIFADQEHNIW-LGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYW 338 (758)
T ss_dssp CEEECCCTTCTTSCSCSCEEEEEECTTCCEE-EEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEE
T ss_pred EEEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-EEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEE
Confidence 4332211 112357888877777544 455556 54443321 2222211 0112346677777777655
Q ss_pred EEEECCCcEEEEEccCCce-eEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccC
Q 001163 658 AVSTNDNGIKILANADGIR-LLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNF 736 (1134)
Q Consensus 658 ~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 736 (1134)
+ |+.+| +..++..++.. .+..+.
T Consensus 339 i-Gt~~G-l~~~~~~~~~~~~~~~~~------------------------------------------------------ 362 (758)
T 3ott_A 339 F-GGANG-LIRFTDPAGERHDAIWYR------------------------------------------------------ 362 (758)
T ss_dssp E-EETTE-EEEESCTTSSCCCCEEEC------------------------------------------------------
T ss_pred E-eeCCc-ceeecccccccceeEEec------------------------------------------------------
Confidence 4 34444 44444332200 000000
Q ss_pred cccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCccccc
Q 001163 737 TDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKA 816 (1134)
Q Consensus 737 ~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 816 (1134)
... . ........|.++.-..+|..-+ |+. +-+..|+.....+.
T Consensus 363 -------------------~~~-----~------~~~l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~~----- 405 (758)
T 3ott_A 363 -------------------MGD-----K------TYPLSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQFI----- 405 (758)
T ss_dssp -------------------TTC-----S------SSCCSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEEE-----
T ss_pred -------------------cCC-----c------CCCCCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcEE-----
Confidence 000 0 0000234577787777777544 333 45666654322110
Q ss_pred ccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCC-----eEE---EEec---C-CC
Q 001163 817 TTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTF-----KTM---TTFM---P-PP 884 (1134)
Q Consensus 817 ~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~-----~~~---~~~~---~-~~ 884 (1134)
.+.... .........|.++...++|.+.+...++-|.++|..+. ... ..+. + ..
T Consensus 406 -------~~~~~~-------~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 471 (758)
T 3ott_A 406 -------HYNIVD-------NTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSG 471 (758)
T ss_dssp -------EEEEEC-------CC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSC
T ss_pred -------EeecCC-------CcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccccccccc
Confidence 000000 00000234688888888887766554667888886531 111 1221 1 22
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccC---ccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCcc
Q 001163 885 PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG---HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEK 961 (1134)
Q Consensus 885 ~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~---h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~ 961 (1134)
..|.++...+ ++.+.+.++..+-|..+|..+++....... ....+.++....+|.+.+.. ..| +..++..+++.
T Consensus 472 ~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~~~~~~~~~ 548 (758)
T 3ott_A 472 MFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMRINPKDESQ 548 (758)
T ss_dssp SCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEEECC--CCC
T ss_pred ceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEEEecCCCce
Confidence 3588999888 777776444445588899887765432211 13457888888888777654 445 88888776542
Q ss_pred ccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEE-ccCCCEEEEEec
Q 001163 962 QASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATY-SCDSQSIYVAFE 1040 (1134)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~-s~dg~~l~s~s~ 1040 (1134)
.. .. ..+.. ...+.++... +|+ |..+.+.-+..||..+.+... +... ...+....+ .+||. |..|+.
T Consensus 549 ~~---~~-~~gl~--~~~i~~i~~~-~g~-lWi~t~~Gl~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~G~-l~fG~~ 616 (758)
T 3ott_A 549 QS---IS-FGSFS--NNEILSMTCV-KNS-IWVSTTNGLWIIDRKTMDARQ-QNMT--NKRFTSLLFDPKEDC-VYLGGA 616 (758)
T ss_dssp CB---CC-CCC-----CCEEEEEEE-TTE-EEEEESSCEEEEETTTCCEEE-C--C--CCCCSEEEEETTTTE-EEEECB
T ss_pred EE---ec-ccCCC--ccceEEEEEC-CCC-EEEECCCCeEEEcCCCceeEE-ecCC--CCceeeeEEECCCCc-EEEecC
Confidence 21 11 11111 1347777664 565 445546668888988765432 1111 122233344 34665 555777
Q ss_pred CCcEEEeecC
Q 001163 1041 EGSVGVLTAS 1050 (1134)
Q Consensus 1041 Dg~i~vwd~~ 1050 (1134)
+|. ..++-.
T Consensus 617 ~Gl-~~f~p~ 625 (758)
T 3ott_A 617 DGF-GISHSN 625 (758)
T ss_dssp SEE-EEEEC-
T ss_pred Cce-EEEChh
Confidence 774 445543
No 260
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.57 E-value=3.4e-05 Score=91.15 Aligned_cols=192 Identities=11% Similarity=0.039 Sum_probs=120.4
Q ss_pred EEEEEeC-CCeEEEEEC-CCCceeEEecCCCc-C---------E-EEEeccccCCccEEEEecCCCcEEEEecCCCCcee
Q 001163 479 SVVTCGE-DRVIKVWDA-VTGTKQYIFEGHES-P---------V-YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV 545 (1134)
Q Consensus 479 ~l~s~s~-d~~i~iwd~-~~~~~~~~~~~h~~-~---------v-~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~ 545 (1134)
.++.++. ++.|.-+|. .+|+.+.++..... . + ..+++ .+..++.++.|+.|..+|..+++...
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 3666666 889999999 89999887753221 0 0 01111 12578888889999999999888877
Q ss_pred eecCCCC----CeeE-EEECcCCCEEEEEecCC--CCCeEEEEEeCCCCeeEEEecCCCCC-------------------
Q 001163 546 DYDAPGH----SSTM-MAYSADGARLFSCGTNK--EGESYLVEWNESEGAVKRTYHGLGKR------------------- 599 (1134)
Q Consensus 546 ~~~~~~~----~v~~-~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~------------------- 599 (1134)
....... .+.+ ..+ .++ .+++++... ..++.|+.+|..+|+.+.++......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 6554321 1211 111 134 455544211 01457999999999998877643210
Q ss_pred ------------------ceEEEEEcCCCCEEEEEeCC----------------CeEEEEEcCCCceeEEEecCCCCC--
Q 001163 600 ------------------SVGVVQFDTTKNRFLAAGDE----------------FMIKFWDMDNVNLLASIDADGGLQ-- 643 (1134)
Q Consensus 600 ------------------~v~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~-- 643 (1134)
....+++.++...++.+..+ +.|..+|..+|+.+-.++...+..
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 00135667776777776532 369999999999988876532210
Q ss_pred --Ccce---EEEcCCCc---EEEEEECCCcEEEEEccCCce
Q 001163 644 --ASPC---IRFNKEGI---LLAVSTNDNGIKILANADGIR 676 (1134)
Q Consensus 644 --~v~~---v~~sp~~~---~l~~~~~dg~i~iw~~~~~~~ 676 (1134)
.+.. +....+|+ .++.++.+|.++++|..+++.
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 338 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL 338 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCE
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCE
Confidence 1111 22224674 677888999999999999843
No 261
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.56 E-value=2.3e-05 Score=92.35 Aligned_cols=76 Identities=14% Similarity=0.102 Sum_probs=51.2
Q ss_pred CeEEEEEccCCeEEEEecCCCCCeEE-EEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCce-EEEEEeeCCCE
Q 001163 864 GKISLFNMMTFKTMTTFMPPPPAATF-LAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRI-TGLAFSNTLNV 941 (1134)
Q Consensus 864 g~i~lwd~~~~~~~~~~~~~~~~v~~-l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~~ 941 (1134)
|.|..||+.+++.+.+.......... ++. .+.+++.++.||.++.||..+|+.+.+++.....+ .-+.+..+|+.
T Consensus 453 G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t---agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 453 GQIKAYNAITGDYKWEKMERFAVWGGTMAT---AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CeEEEEECCCCCEEeEecCCCCccCcceEe---cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence 67899999999988876422111111 222 34577789999999999999999998776443222 23556667764
Q ss_pred E
Q 001163 942 L 942 (1134)
Q Consensus 942 l 942 (1134)
.
T Consensus 530 y 530 (599)
T 1w6s_A 530 Y 530 (599)
T ss_dssp E
T ss_pred E
Confidence 3
No 262
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.54 E-value=9.3e-06 Score=99.92 Aligned_cols=248 Identities=11% Similarity=0.001 Sum_probs=136.0
Q ss_pred CeeEEEEc-CCCCeEEEEEeCCC----cEEEEecCCc-cceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCC
Q 001163 358 AVKSMDFH-PVQQILLVVGTNMG----DVMLWEVGSR-ERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT 431 (1134)
Q Consensus 358 ~V~~v~fs-p~g~~lla~gs~dg----~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~ 431 (1134)
.+...+|| |||++++.+.+.+| .|+++|+.++ +.+.. . +. .....++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------VS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------EE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------cc---CceeeEEEecCCC
Confidence 57789999 99997766655544 4999999988 63221 0 11 1134689999999
Q ss_pred EEEEEeCC-----CEEEEEEccCCceeeeeeeee-cCCCCEEEEEEecCCCceEEEEEe-CCCeEEEEECCCCc-ee--E
Q 001163 432 LFGVAYSK-----HIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVTGT-KQ--Y 501 (1134)
Q Consensus 432 ~las~s~d-----g~v~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s-~d~~i~iwd~~~~~-~~--~ 501 (1134)
.|+....| ..|.++++.++..... ..+. .+......+.|+|||+.+++.+.+ ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 88887765 3688888877642211 1222 233456788999999953332322 23478889988762 22 3
Q ss_pred Ee-cCCCcCEEEEeccccCCccEEEEecCC--C--cEEEEecCCCCceee-ecCCCC--CeeEEEECcCCCEEEEEecCC
Q 001163 502 IF-EGHESPVYSICPHHKENIQFIFSTATD--G--KIKAWLYDNLGSRVD-YDAPGH--SSTMMAYSADGARLFSCGTNK 573 (1134)
Q Consensus 502 ~~-~~h~~~v~~~~~~~~~~~~~l~s~s~d--g--~i~vwd~~~~~~~~~-~~~~~~--~v~~~~~s~~~~~l~~~~~~~ 573 (1134)
.+ .+......++.|+ .++.+++....+ + .|..+++.+...... +..+.. .+..+.+ .+..|+.....
T Consensus 313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~- 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRR- 387 (751)
T ss_dssp ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEE-
T ss_pred EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEEe-
Confidence 33 3344455555432 222444554443 3 466666654222122 222333 3344444 45666554432
Q ss_pred CCCeEEEEEeC-------CCCeeEEEecCCCCCceEEEEE----cCCCC-EEEEEeC---CCeEEEEEcCCCce
Q 001163 574 EGESYLVEWNE-------SEGAVKRTYHGLGKRSVGVVQF----DTTKN-RFLAAGD---EFMIKFWDMDNVNL 632 (1134)
Q Consensus 574 ~~~~~i~~wd~-------~~~~~~~~~~~~~~~~v~~~~~----~~~~~-~l~~~~~---dg~i~iwd~~~~~~ 632 (1134)
++...|.++|+ .+++....+.......+..+.+ ++++. .+++.+. -+.++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34667888886 4444133333222112223322 34554 4444332 24677888877764
No 263
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.54 E-value=7.8e-05 Score=88.08 Aligned_cols=195 Identities=11% Similarity=0.023 Sum_probs=120.4
Q ss_pred EEEEeCCCeEEEEECCCCceeEEecCCCcCE---------EEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCC
Q 001163 480 VVTCGEDRVIKVWDAVTGTKQYIFEGHESPV---------YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP 550 (1134)
Q Consensus 480 l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v---------~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 550 (1134)
++.++.++.|.-+|..+|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++........
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 5555554459999999999998776432210 11111 1256788888999999999998887765543
Q ss_pred CC----Cee-EEEECc---CCC-EEEEEecCC--CCCeEEEEEeCCCCeeEEEecCCCC---------------------
Q 001163 551 GH----SST-MMAYSA---DGA-RLFSCGTNK--EGESYLVEWNESEGAVKRTYHGLGK--------------------- 598 (1134)
Q Consensus 551 ~~----~v~-~~~~s~---~~~-~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~--------------------- 598 (1134)
.. .+. ...+.. +|+ .+++++... ..++.|+.+|..+|+.+........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 111111 234 455543211 1245799999999998876643210
Q ss_pred -------------------CceEEEEEcCCCCEEEEEeC--------------------C----CeEEEEEcCCCceeEE
Q 001163 599 -------------------RSVGVVQFDTTKNRFLAAGD--------------------E----FMIKFWDMDNVNLLAS 635 (1134)
Q Consensus 599 -------------------~~v~~~~~~~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~~~ 635 (1134)
..-...++.|+...++.+.. | +.|..+|..+|+.+-.
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 00013566777778887663 2 6899999999999988
Q ss_pred EecCCCCC----Ccce-EEEc---CCC---cEEEEEECCCcEEEEEccCCceeE
Q 001163 636 IDADGGLQ----ASPC-IRFN---KEG---ILLAVSTNDNGIKILANADGIRLL 678 (1134)
Q Consensus 636 ~~~~~~~~----~v~~-v~~s---p~~---~~l~~~~~dg~i~iw~~~~~~~~~ 678 (1134)
++...+.. .+.. +.+. .+| ..++.++.+|.++++|..+++.+.
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 360 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQN 360 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEec
Confidence 76432210 1111 2222 467 378889999999999999995443
No 264
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.50 E-value=8.8e-06 Score=82.86 Aligned_cols=182 Identities=15% Similarity=0.100 Sum_probs=126.5
Q ss_pred EEEEEEecCCCceEEEEEeCCC--eEEEEECCCCceeEEecCCCcC-EEEEeccccCCccEEEEecCCCcEEEEecCCCC
Q 001163 466 VNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYIFEGHESP-VYSICPHHKENIQFIFSTATDGKIKAWLYDNLG 542 (1134)
Q Consensus 466 V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 542 (1134)
...+.|+ ++. ++.+.+.+| .|+++|+.+|+.+.++.-.... -..+++ .++ .+.+..-.++.+.+||..+.+
T Consensus 45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~-~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKD-KIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETT-EEEEEESSSSEEEEEETTTCC
T ss_pred cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCC-EEEEEEeeCCEEEEEECccCc
Confidence 4788998 554 677777766 9999999999999887643222 123443 332 455555568999999999988
Q ss_pred ceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCC-C---CceEEEEEcCCCCEEEEEe-
Q 001163 543 SRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG-K---RSVGVVQFDTTKNRFLAAG- 617 (1134)
Q Consensus 543 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~---~~v~~~~~~~~~~~l~~~~- 617 (1134)
....+..... ...+++|++.|+... +...|.++|..+.+.+.++.... . ..++.+.|. +|. +++..
T Consensus 119 ~~~ti~~~~e---G~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w 189 (262)
T 3nol_A 119 QVRSFNYDGE---GWGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IFANVW 189 (262)
T ss_dssp EEEEEECSSC---CCCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET
T ss_pred EEEEEECCCC---ceEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EEEEEc
Confidence 8777765432 233446787777653 34569999999999888776532 1 134456775 564 55554
Q ss_pred CCCeEEEEEcCCCceeEEEecCCC----------CCCcceEEEcCCCcEEEEEEC
Q 001163 618 DEFMIKFWDMDNVNLLASIDADGG----------LQASPCIRFNKEGILLAVSTN 662 (1134)
Q Consensus 618 ~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~v~~sp~~~~l~~~~~ 662 (1134)
.+..|.+.|..+++.+..+...+- ....+.++|+|+++.|++.+.
T Consensus 190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 788999999999999999875321 124578999998877766664
No 265
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.50 E-value=3.2e-06 Score=85.98 Aligned_cols=206 Identities=10% Similarity=0.036 Sum_probs=135.4
Q ss_pred eEEEEecCCCC--CeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEE-EEeCCCcE
Q 001163 875 KTMTTFMPPPP--AATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLV-SSGADSQL 951 (1134)
Q Consensus 875 ~~~~~~~~~~~--~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~i 951 (1134)
+.+.++. |.. -...+.|+ ++.+.++.+.+|.|+++|+.+++.+..+ - ..........++++.|. ..-.++.+
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDGERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECSSCEEEEESSSCEE
T ss_pred EEEEEEc-CCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeCCEEEEEEccCCEE
Confidence 4455553 443 35789997 5678888888899999999999988776 2 23343322333444444 44568899
Q ss_pred EEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCcccceeeccCCCcc---CEEEEE
Q 001163 952 CVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPREASG---PITHAT 1027 (1134)
Q Consensus 952 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~---~v~~~~ 1027 (1134)
.+||.++.+.... +.. ... ...+++|++.|+++ .+++|.++|..+.+.+..+....+.. .+..+.
T Consensus 119 ~V~D~~Tl~~~~t--i~~--~~e-------GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe 187 (268)
T 3nok_A 119 FTWSGMPPQRERT--TRY--SGE-------GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE 187 (268)
T ss_dssp EEEETTTTEEEEE--EEC--SSC-------CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEEECCcCcEEEE--EeC--CCc-------eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence 9999998664332 222 111 13344778888886 47899999999999988877533322 446677
Q ss_pred EccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCC----CCCCCceeEEEEecCCCCCEEEEEecCCcEE
Q 001163 1028 YSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPT----NPSLRVYPLVIAGNPTDPNQFALGLTDGGVY 1097 (1134)
Q Consensus 1028 ~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~ 1097 (1134)
|. ||+..+..-.++.|.+.|..+|+.+..+......+. .+...-..-.++|+|+...++++|-.--.++
T Consensus 188 ~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ 260 (268)
T 3nok_A 188 CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLF 260 (268)
T ss_dssp EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEE
T ss_pred Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceE
Confidence 76 886665555678999999999999888775422110 1111112345699997777888776655444
No 266
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.49 E-value=6.3e-06 Score=83.81 Aligned_cols=185 Identities=8% Similarity=0.053 Sum_probs=126.0
Q ss_pred CCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCe--EEEEEcCCCCcEEEEEeCCCcEEEEEcccceEE
Q 001163 844 DAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAA--TFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK 920 (1134)
Q Consensus 844 ~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v--~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~ 920 (1134)
.....+.|+. +.+..+.+ +|.|+++|+.+++.+..+ -.... ..+++. ++++.+....++.+.+||..+.+.+
T Consensus 55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEE
T ss_pred cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEE
Confidence 3446888874 44444444 789999999999998887 22333 345654 4566666667899999999999999
Q ss_pred EeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eece
Q 001163 921 TKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQ 999 (1134)
Q Consensus 921 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~ 999 (1134)
.++..- ..-..++ +|++.|+.+..++.|.++|..+.+.... +.+...... ...+.-+.|. +|+..+.. .+..
T Consensus 130 ~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~--I~V~~~g~~-v~~lNeLe~~-dG~lyanvw~s~~ 202 (268)
T 3nok_A 130 RTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGA--VQVKLRGQP-VELINELECA-NGVIYANIWHSSD 202 (268)
T ss_dssp EEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEE--EECEETTEE-CCCEEEEEEE-TTEEEEEETTCSE
T ss_pred EEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEE--EEeCCCCcc-cccccccEEe-CCEEEEEECCCCe
Confidence 888753 2223444 6788888877789999999998764432 222211110 0234566776 77644444 5789
Q ss_pred EEEEeCCCcccceeeccCC-----------CccCEEEEEEccCCCEEEEEec
Q 001163 1000 IAIYEAPKLECLKQFVPRE-----------ASGPITHATYSCDSQSIYVAFE 1040 (1134)
Q Consensus 1000 i~iwd~~~~~~~~~~~~~~-----------h~~~v~~~~~s~dg~~l~s~s~ 1040 (1134)
|.+.|..+++.+..+...+ -..-...||++|+++.|+..+.
T Consensus 203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 9999999999888776421 1246688999998877766553
No 267
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.45 E-value=3.3e-05 Score=84.55 Aligned_cols=237 Identities=12% Similarity=0.024 Sum_probs=144.6
Q ss_pred eeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEe-cC------------------CCCCeEEEEEcCCCCcEEEEEeC
Q 001163 846 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTF-MP------------------PPPAATFLAFHPQDNNIIAIGME 905 (1134)
Q Consensus 846 v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~-~~------------------~~~~v~~l~~sp~~~~~la~g~~ 905 (1134)
..+++++++|+++.++. ++.|..||..+++...-. .. ....+..+++.+++++ |.++..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDC 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEET
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEEC
Confidence 45788999998666666 789999998765433211 10 0135788999963454 445544
Q ss_pred CCcEEEEEcccceEEEecc----C-ccCceEEEEEee-CCCEEEEEeC-----------------CCcEEEEECCCCccc
Q 001163 906 DSSIQIYNVRVDEVKTKLK----G-HQKRITGLAFSN-TLNVLVSSGA-----------------DSQLCVWSTDGWEKQ 962 (1134)
Q Consensus 906 dg~i~iwd~~~~~~~~~l~----~-h~~~V~~l~~s~-d~~~l~s~s~-----------------Dg~i~iwd~~~~~~~ 962 (1134)
.+.|..+|..+++. ..+. + .......+++.+ +|++.++... ++.|..||..+++..
T Consensus 100 ~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 100 YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 55588888776542 2221 1 113467899999 9987776533 366888887765421
Q ss_pred cceeeeecCCCCCCCCCceEEEEcCCCCEEEEE--eeceEEEEeCCCccc--ceeeccCCCccCEEEEEEccCCCEEEEE
Q 001163 963 ASKFLTIPNGRTASALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLEC--LKQFVPREASGPITHATYSCDSQSIYVA 1038 (1134)
Q Consensus 963 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~i~iwd~~~~~~--~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 1038 (1134)
. ..... .....++|++||+.|.++ ..+.|.+|++..... ...+.. ..+ ...+++.++|.+.++.
T Consensus 179 ~--~~~~~-------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~ 246 (322)
T 2fp8_A 179 L--LLKEL-------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSS 246 (322)
T ss_dssp E--EEEEE-------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEE
T ss_pred E--eccCC-------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEe
Confidence 1 11111 124679999999977765 457899999875321 111111 123 7889999999977766
Q ss_pred ec----------CCcEEEeecCCCcceeecCCCcccCCCC-CCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCC
Q 001163 1039 FE----------EGSVGVLTASTLRLRCRINPTAYLPTNP-SLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus 1039 s~----------Dg~i~vwd~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
.. .+.|..+|. .++.+..+.... +. ...+..+ ++ . +++++++....+.|..+++....
T Consensus 247 ~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~----g~~~~~~~~~--~~-~-~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 247 SEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPP----PFAGEHFEQI--QE-H-DGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEETTSSTTSCEEEEEEEECT-TSCEEEEEECCT----TTTTSCCCEE--EE-E-TTEEEEECSSCSEEEEEEC----
T ss_pred cCcccccccCCCccEEEEECC-CCCEEEEEECCC----CCccccceEE--EE-e-CCEEEEeecCCCceEEEeccccc
Confidence 54 467888886 466665554221 11 1223444 33 2 56666666678889999876443
No 268
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.43 E-value=3.9e-05 Score=93.06 Aligned_cols=280 Identities=7% Similarity=-0.009 Sum_probs=155.8
Q ss_pred eEEEEcC-CCCeEEEEEeCCC-----------cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163 360 KSMDFHP-VQQILLVVGTNMG-----------DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1134)
Q Consensus 360 ~~v~fsp-~g~~lla~gs~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (1134)
.++++.| +|+ +++.|+.+. .+.+||..+++-..... ....+.....++++.
T Consensus 189 ~~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~~ 251 (656)
T 1k3i_A 189 AAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISMD 251 (656)
T ss_dssp SEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEEC
T ss_pred eeEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc----------------cCCCCCCccccccCC
Confidence 3677787 676 667776442 58899988876322100 012233344567888
Q ss_pred CCCCEEEEEeC-CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEe-CC-----CeEEEEECCCCcee
Q 001163 428 PDGTLFGVAYS-KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-ED-----RVIKVWDAVTGTKQ 500 (1134)
Q Consensus 428 pd~~~las~s~-dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-~d-----~~i~iwd~~~~~~~ 500 (1134)
.+|+++++|+. +..+.+||..+++-.. ...+.... .-.+++..++|+ +++.|+ .+ ..+.+||..+++..
T Consensus 252 ~~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~~~~R-~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 252 GNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVAR-GYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp TTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSCC-SSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CCCCEEEeCCCCCCceEEecCcCCceeE-CCCCCccc-cccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce
Confidence 99999999984 4589999998765322 11222111 123455667888 777777 44 57899999887643
Q ss_pred EEe----cCCCcCEEEEeccccCCccEEEEecCC---------CcEEEEecCCCCceeeecCC---------CCCeeEEE
Q 001163 501 YIF----EGHESPVYSICPHHKENIQFIFSTATD---------GKIKAWLYDNLGSRVDYDAP---------GHSSTMMA 558 (1134)
Q Consensus 501 ~~~----~~h~~~v~~~~~~~~~~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~---------~~~v~~~~ 558 (1134)
..- ......-....+ ..++..++.++.+ ..+..||............. ...-.++.
T Consensus 328 ~~~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EETTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eCCCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 320 000000000011 1222344445444 35677887665422211111 11123344
Q ss_pred EC-cCCCEEEEEecCCC----CC---eEEEEEeCCCCeeEEEe--cCCCCCceEEEEEcCCCCEEEEEeCC---------
Q 001163 559 YS-ADGARLFSCGTNKE----GE---SYLVEWNESEGAVKRTY--HGLGKRSVGVVQFDTTKNRFLAAGDE--------- 619 (1134)
Q Consensus 559 ~s-~~~~~l~~~~~~~~----~~---~~i~~wd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d--------- 619 (1134)
+. .+++.++.++.+.. .. ..+.+||..+....... .........+++..|+++.++.|+.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~ 485 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 485 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence 43 36777777764321 01 15888998887665543 22222123455677899999998854
Q ss_pred --CeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEEC
Q 001163 620 --FMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTN 662 (1134)
Q Consensus 620 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~ 662 (1134)
..+.+||..+.+....-..........+..+.|+|++++.|+.
T Consensus 486 ~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 486 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999987664432211111112234566789999999885
No 269
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.43 E-value=0.00015 Score=78.44 Aligned_cols=226 Identities=12% Similarity=0.007 Sum_probs=137.6
Q ss_pred ccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCC
Q 001163 777 MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS 856 (1134)
Q Consensus 777 ~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~ 856 (1134)
.....++++++|+.+++-..++.|..|+... +...... .......++++++|+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g----------------------~~~~~~~-----~~~~p~gia~~~dG~ 84 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG----------------------NQQIHAT-----VEGKVSGLAFTSNGD 84 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC----------------------CEEEEEE-----CSSEEEEEEECTTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC----------------------ceEEEEe-----CCCCceeEEEcCCCc
Confidence 4567899999999766666778887775331 1111100 124578899999999
Q ss_pred eEEEee-CC--eEEEEEccCCeEEEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce--EEEe--------
Q 001163 857 YVMSAS-GG--KISLFNMMTFKTMTTFMP-PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE--VKTK-------- 922 (1134)
Q Consensus 857 ~la~~s-dg--~i~lwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~--~~~~-------- 922 (1134)
++++.. .+ .|..+|..+++....... .......++..+ ++..+++-..++.|+++|..+++ ....
T Consensus 85 l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~ 163 (306)
T 2p4o_A 85 LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSN 163 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred EEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccccc
Confidence 766554 22 477777777775433321 222345566666 66556655568889999987543 2110
Q ss_pred ccCccCceEEEEEeeCCCEEEE-EeCCCcEEEEECCC-CccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-Eeece
Q 001163 923 LKGHQKRITGLAFSNTLNVLVS-SGADSQLCVWSTDG-WEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQ 999 (1134)
Q Consensus 923 l~~h~~~V~~l~~s~d~~~l~s-~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~ 999 (1134)
....-.....+ ++|++.|+. -...+.|..++++. ++......+... .....++++++|++.++ ...+.
T Consensus 164 ~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-------~~P~gi~vd~dG~l~va~~~~~~ 234 (306)
T 2p4o_A 164 SESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-------TNIDDFAFDVEGNLYGATHIYNS 234 (306)
T ss_dssp TTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-------CCCSSEEEBTTCCEEEECBTTCC
T ss_pred ccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-------CCCCCeEECCCCCEEEEeCCCCe
Confidence 01111234455 888876654 45577899999875 332222222111 12456999999987666 35688
Q ss_pred EEEEeCCCcccce--eeccCCCccCEEEEEEc---cCCCEEEEEecCC
Q 001163 1000 IAIYEAPKLECLK--QFVPREASGPITHATYS---CDSQSIYVAFEEG 1042 (1134)
Q Consensus 1000 i~iwd~~~~~~~~--~~~~~~h~~~v~~~~~s---~dg~~l~s~s~Dg 1042 (1134)
|.++|.. ++... .+. ......++++|. +|++.|+.++..+
T Consensus 235 V~~~~~~-G~~~~~~~~~--~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 235 VVRIAPD-RSTTIIAQAE--QGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEEECTT-CCEEEEECGG--GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EEEECCC-CCEEEEeecc--cccCCceEEEEecccCCCCEEEEECCCC
Confidence 9999975 55422 222 113568999999 8988887766543
No 270
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.40 E-value=9.2e-05 Score=74.79 Aligned_cols=211 Identities=10% Similarity=0.087 Sum_probs=136.5
Q ss_pred eEEEEecCCCC--CeEEEEEcCCCCcEEEEEeCCC--cEEEEEcccceEEEeccCccCceEEEEEeeCCCEEE-EEeCCC
Q 001163 875 KTMTTFMPPPP--AATFLAFHPQDNNIIAIGMEDS--SIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLV-SSGADS 949 (1134)
Q Consensus 875 ~~~~~~~~~~~--~v~~l~~sp~~~~~la~g~~dg--~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~-s~s~Dg 949 (1134)
+.+.++. |+. -...+.|++ +.++.+.+.+| .|+.+|+.+++.+........ ........++..|. ..-.++
T Consensus 10 ~v~~~~p-hd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRYP-HDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEcC-CCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCC
Confidence 4556663 553 467899985 56666666654 899999999999887754332 33333333444444 445688
Q ss_pred cEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCcccceeeccCCCc---cCEEE
Q 001163 950 QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPREAS---GPITH 1025 (1134)
Q Consensus 950 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~---~~v~~ 1025 (1134)
.+.+||.++.+.... +.. +.. ...+.+|++.|+++ .+++|.++|..+.+.+..+....+. ..+..
T Consensus 86 ~v~v~D~~tl~~~~t--i~~--~~~-------Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe 154 (243)
T 3mbr_X 86 EGFVYDLATLTPRAR--FRY--PGE-------GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE 154 (243)
T ss_dssp EEEEEETTTTEEEEE--EEC--SSC-------CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred EEEEEECCcCcEEEE--EeC--CCC-------ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence 999999998663331 221 111 13445677777775 4678999999999988887753332 34456
Q ss_pred EEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCC----CCCCceeEEEEecCCCCCEEEEEecCCcEEEEeC
Q 001163 1026 ATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTN----PSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEP 1101 (1134)
Q Consensus 1026 ~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~ 1101 (1134)
+.+. +|+..+..-.+..|.+.|..+|+.+..+..+...+.. +...-..-.++|+|+...++++|-.--.++--.+
T Consensus 155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~ 233 (243)
T 3mbr_X 155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRL 233 (243)
T ss_dssp EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEE
Confidence 6665 7776655556789999999999999888755433322 1111123456999976677777776665554444
No 271
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.40 E-value=5.9e-05 Score=82.46 Aligned_cols=252 Identities=9% Similarity=0.009 Sum_probs=145.3
Q ss_pred cEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCC------CCCCCCeeEEEE
Q 001163 778 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISD------TNPEDAVPCFAL 851 (1134)
Q Consensus 778 ~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~------~~h~~~v~~v~~ 851 (1134)
...++++.++|+.+.++..++.|..|+...... ..|.............+ ......+..+++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~ 87 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF------------VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISY 87 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCE------------EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCce------------EEEecccccccccccccccchhccccCCCCceEEE
Confidence 345778899998788888888888886542211 00100000000000000 001134688999
Q ss_pred cC-CCCeEEEeeCCeEEEEEccCCeEEEEe---cC-CCCCeEEEEEcCCCCcEEEEEeC-----------------CCcE
Q 001163 852 SK-NDSYVMSASGGKISLFNMMTFKTMTTF---MP-PPPAATFLAFHPQDNNIIAIGME-----------------DSSI 909 (1134)
Q Consensus 852 s~-dg~~la~~sdg~i~lwd~~~~~~~~~~---~~-~~~~v~~l~~sp~~~~~la~g~~-----------------dg~i 909 (1134)
++ +|+++++...+.|..+|..++...... .+ .......+++.+.+|.+.++-.. ++.|
T Consensus 88 ~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v 167 (322)
T 2fp8_A 88 NLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRL 167 (322)
T ss_dssp ETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred cCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceE
Confidence 97 666555544566888887765422211 11 11346789998833555554322 3678
Q ss_pred EEEEcccceEEEeccCccCceEEEEEeeCCCEEEEE-eCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCC
Q 001163 910 QIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSS-GADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD 988 (1134)
Q Consensus 910 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d 988 (1134)
..||..+++...... .-.....++|+++++.|+.+ ..++.|.+|++..........+.... . ...++++++
T Consensus 168 ~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~------g-P~gi~~d~~ 239 (322)
T 2fp8_A 168 IKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP------N-PGNIKRNAD 239 (322)
T ss_dssp EEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS------S-EEEEEECTT
T ss_pred EEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC------C-CCCeEECCC
Confidence 888887776433222 12334679999999866554 56688999998864322222222111 1 567899999
Q ss_pred CCEEEEE-e----------eceEEEEeCCCcccceeeccCC-C-ccCEEEEEEccCCCEEEEEecCCcEEEeecCC
Q 001163 989 QTHLLAV-H----------ETQIAIYEAPKLECLKQFVPRE-A-SGPITHATYSCDSQSIYVAFEEGSVGVLTAST 1051 (1134)
Q Consensus 989 g~~l~~~-~----------d~~i~iwd~~~~~~~~~~~~~~-h-~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~ 1051 (1134)
|++.++. . .+.|..+|.. ++.+..+.... . -..++++++ .+|++.++....+.|.++++..
T Consensus 240 G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 240 GHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp SCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 9876664 3 4678888874 66666554221 1 235667776 4666666666778899998764
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.40 E-value=0.00032 Score=75.90 Aligned_cols=239 Identities=9% Similarity=0.055 Sum_probs=142.8
Q ss_pred CCceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEE
Q 001163 345 LPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 424 (1134)
Q Consensus 345 ~~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 424 (1134)
.+.+.+..+........++|+++|+ |+++-..++.|..||...+. .. .+. ....+..+
T Consensus 20 ~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~-~~-----~~~---------------~~~~p~gi 77 (306)
T 2p4o_A 20 APAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQ-QI-----HAT---------------VEGKVSGL 77 (306)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCE-EE-----EEE---------------CSSEEEEE
T ss_pred CCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCce-EE-----EEe---------------CCCCceeE
Confidence 3455666676557888999999998 66676678899999987542 11 111 12468899
Q ss_pred EEcCCCCEEEEEeCC-C-EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce-eE
Q 001163 425 MWSPDGTLFGVAYSK-H-IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK-QY 501 (1134)
Q Consensus 425 ~~spd~~~las~s~d-g-~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~ 501 (1134)
+++++|+++++.... + .|..+|..+++.. ....+. .......++..+++. .+++-..++.|.++|..+++. +.
T Consensus 78 a~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~v~ 153 (306)
T 2p4o_A 78 AFTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIW 153 (306)
T ss_dssp EECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEeEE
Confidence 999999976665443 2 4666777777632 222221 122334555555444 455555688999999776532 21
Q ss_pred Eec---------CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCc---eeeecCCCCCeeEEEECcCCCEEEEE
Q 001163 502 IFE---------GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS---RVDYDAPGHSSTMMAYSADGARLFSC 569 (1134)
Q Consensus 502 ~~~---------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~ 569 (1134)
... +.-...+.+ +++. +.++++-...+.|..++++.... ...+. .......++++++|+..++.
T Consensus 154 ~~~~~~~~~~~~~~~~~pngi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~ 229 (306)
T 2p4o_A 154 LEHPMLARSNSESVFPAANGL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGAT 229 (306)
T ss_dssp EECGGGSCSSTTCCSCSEEEE--EEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEEC
T ss_pred EECCccccccccCCCCcCCCc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEe
Confidence 111 111234445 3332 24556666778999999874211 11111 11235678999999876654
Q ss_pred ecCCCCCeEEEEEeCCCCeeEE--EecCCCCCceEEEEEc---CCCCEEEEEeCC
Q 001163 570 GTNKEGESYLVEWNESEGAVKR--TYHGLGKRSVGVVQFD---TTKNRFLAAGDE 619 (1134)
Q Consensus 570 ~~~~~~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~~---~~~~~l~~~~~d 619 (1134)
.. ...|.++|.. ++... .+...- ....+++|. ++++.|++++..
T Consensus 230 ~~----~~~V~~~~~~-G~~~~~~~~~~~~-~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 230 HI----YNSVVRIAPD-RSTTIIAQAEQGV-IGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp BT----TCCEEEECTT-CCEEEEECGGGTC-TTEEEEEECCSTTTTTEEEEEECT
T ss_pred CC----CCeEEEECCC-CCEEEEeeccccc-CCceEEEEecccCCCCEEEEECCC
Confidence 32 3358999975 65533 233221 257889998 788777776643
No 273
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.39 E-value=0.00012 Score=86.37 Aligned_cols=204 Identities=12% Similarity=0.001 Sum_probs=121.6
Q ss_pred CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCC-------EEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEE
Q 001163 430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGS-------VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI 502 (1134)
Q Consensus 430 ~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~-------V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 502 (1134)
+..|.+++.++.|.-+|..+|+.+-... ....... -..++. .+. .++.++.|+.|.-+|..+|+.+..
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~g~a~--~~~--~v~~~t~dg~l~AlD~~TG~~~W~ 142 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYN-HRLPDDIRPCCDVVNRGAAI--YGD--KVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEE-CCCCTTCCCSSCSCCCCCEE--ETT--EEEEEETTTEEEEEESSSCCEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEc-CCCCcccccccccCCCccEE--ECC--EEEEEeCCCEEEEEECCCCCEEee
Confidence 4455555554448889999998765432 1111000 012222 234 477888899999999999999887
Q ss_pred ecCCCc----CEEE-Eecccc-CCcc-EEEEecC------CCcEEEEecCCCCceeeecCCCC-----------------
Q 001163 503 FEGHES----PVYS-ICPHHK-ENIQ-FIFSTAT------DGKIKAWLYDNLGSRVDYDAPGH----------------- 552 (1134)
Q Consensus 503 ~~~h~~----~v~~-~~~~~~-~~~~-~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~----------------- 552 (1134)
+..... .+.+ -.+... .+++ .+++++. ++.|..+|..+++.+........
T Consensus 143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g 222 (582)
T 1flg_A 143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVK 222 (582)
T ss_dssp EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTT
T ss_pred ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccc
Confidence 653321 1110 011111 1222 5666553 78899999888776665432110
Q ss_pred ------------------------CeeEEEECcCCCEEEEEecCC----------C----------CCeEEEEEeCCCCe
Q 001163 553 ------------------------SSTMMAYSADGARLFSCGTNK----------E----------GESYLVEWNESEGA 588 (1134)
Q Consensus 553 ------------------------~v~~~~~s~~~~~l~~~~~~~----------~----------~~~~i~~wd~~~~~ 588 (1134)
.-..+++.|+...++.+..+. . -...|..+|..+|+
T Consensus 223 ~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~ 302 (582)
T 1flg_A 223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGE 302 (582)
T ss_dssp CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCC
T ss_pred cccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCC
Confidence 002356667777777665321 1 11579999999999
Q ss_pred eEEEecCCCC--------CceEEEEEc-CCCC---EEEEEeCCCeEEEEEcCCCceeEEEec
Q 001163 589 VKRTYHGLGK--------RSVGVVQFD-TTKN---RFLAAGDEFMIKFWDMDNVNLLASIDA 638 (1134)
Q Consensus 589 ~~~~~~~~~~--------~~v~~~~~~-~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (1134)
.+..+..... .....+... .+|+ .++.++.+|.++++|..+|+++.....
T Consensus 303 ~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 303 VKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp EEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred EEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence 9988754211 011112221 4563 678888999999999999999877654
No 274
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.37 E-value=5.3e-05 Score=76.53 Aligned_cols=188 Identities=10% Similarity=0.118 Sum_probs=126.3
Q ss_pred CCCeeEEEEcCCCCeEEEee-C--CeEEEEEccCCeEEEEecCCCCC-eEEEEEcCCCCcEEEEEeCCCcEEEEEcccce
Q 001163 843 EDAVPCFALSKNDSYVMSAS-G--GKISLFNMMTFKTMTTFMPPPPA-ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE 918 (1134)
Q Consensus 843 ~~~v~~v~~s~dg~~la~~s-d--g~i~lwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~ 918 (1134)
..-...+.|+. +.+..+.+ + +.|+.+|+.+++.+..+...... --.+++. ++++.+....++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 34566899986 45444444 3 47999999999999987643322 2345554 45666666778999999999999
Q ss_pred EEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-ee
Q 001163 919 VKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HE 997 (1134)
Q Consensus 919 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d 997 (1134)
.+.++.... .-..+ .+|++.|+.+..++.|.++|..+.+.... +.+...... -..+.-+.+. +|+..+.. .+
T Consensus 97 ~~~ti~~~~-~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~--I~V~~~g~~-~~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 97 PRARFRYPG-EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGS--IKVTAGGRP-LDNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp EEEEEECSS-CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEE--EECEETTEE-CCCEEEEEEE-TTEEEEEETTT
T ss_pred EEEEEeCCC-CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEE--EEEccCCcc-cccceeeEEe-CCEEEEEECCC
Confidence 998887533 22344 46777777777788999999988664432 222211110 0224455555 66644444 56
Q ss_pred ceEEEEeCCCcccceeeccCC-----------CccCEEEEEEccCCCEEEEEec
Q 001163 998 TQIAIYEAPKLECLKQFVPRE-----------ASGPITHATYSCDSQSIYVAFE 1040 (1134)
Q Consensus 998 ~~i~iwd~~~~~~~~~~~~~~-----------h~~~v~~~~~s~dg~~l~s~s~ 1040 (1134)
..|.+.|..+++.+..+...+ -..-...|+++|+++.|+..+.
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 799999999999988876321 1235688999999888777664
No 275
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.29 E-value=0.0012 Score=71.99 Aligned_cols=278 Identities=10% Similarity=0.038 Sum_probs=152.4
Q ss_pred ccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCC
Q 001163 777 MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS 856 (1134)
Q Consensus 777 ~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~ 856 (1134)
..+.++.|.+++..+++ +.+|.+... .+.. +-|.. +..... .....+.++.+++ +.
T Consensus 36 ~~~~~v~~~~~~~~~~~-G~~g~i~~s-~DgG--------------~tW~~-----~~~~~~--~~~~~~~~i~~~~-~~ 91 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLV-GVNATLMET-RDGG--------------QTWEP-----RTLVLD--HSDYRFNSVSFQG-NE 91 (327)
T ss_dssp SCEEEEEESSSSCEEEE-ETTTEEEEE-SSTT--------------SSCEE-----CCCCCS--CCCCEEEEEEEET-TE
T ss_pred CcEEEEEECCCCcEEEE-cCCCeEEEe-CCCC--------------CCCeE-----CCCCCC--CCCccEEEEEecC-Ce
Confidence 46889999887776664 456654321 1110 01111 110011 1245688899986 55
Q ss_pred eEEEeeCCeEEEEEccCCeEEEEec---CCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEE-EeccCccCceEE
Q 001163 857 YVMSASGGKISLFNMMTFKTMTTFM---PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK-TKLKGHQKRITG 932 (1134)
Q Consensus 857 ~la~~sdg~i~lwd~~~~~~~~~~~---~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~-~~l~~h~~~V~~ 932 (1134)
.++++..+.|.. ..+.++.-.... ...+.+..+.+.+ ++.+++++ .+|.|.. ..+.|+.- .....+...+..
T Consensus 92 ~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~ 167 (327)
T 2xbg_A 92 GWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRN 167 (327)
T ss_dssp EEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEE
T ss_pred EEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEE
Confidence 666665675443 233343333322 2335577888876 66666655 4554432 22223221 122345567899
Q ss_pred EEEeeCCCEEEEEeCCCcEEE-EECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccc
Q 001163 933 LAFSNTLNVLVSSGADSQLCV-WSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECL 1011 (1134)
Q Consensus 933 l~~s~d~~~l~s~s~Dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~ 1011 (1134)
+++.+++.+++.+. ++.+.. +|- .++ .+..+... .. ..+..++++++++.++++.+|.+++.+...++..
T Consensus 168 ~~~~~~~~~~~~g~-~G~~~~S~d~-gG~--tW~~~~~~--~~---~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW 238 (327)
T 2xbg_A 168 LNRSPSGEYVAVSS-RGSFYSTWEP-GQT--AWEPHNRT--TS---RRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENW 238 (327)
T ss_dssp EEECTTSCEEEEET-TSSEEEEECT-TCS--SCEEEECC--SS---SCEEEEEECTTSCEEEEETTTEEEEEETTEEEEE
T ss_pred EEEcCCCcEEEEEC-CCcEEEEeCC-CCC--ceeECCCC--CC---CccceeEECCCCCEEEEeCCceEEEecCCCCCee
Confidence 99999988877665 444443 332 111 11222211 11 3578899999999888888888877753434443
Q ss_pred eeeccC--CCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEE
Q 001163 1012 KQFVPR--EASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFAL 1089 (1134)
Q Consensus 1012 ~~~~~~--~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s 1089 (1134)
..+... .+...+.++++.+++.+++++. ++.| ++..+.|+.-..+.... .+...++.+ .|.+ +..+++
T Consensus 239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~----~~~~~~~~v--~~~~--~~~~~~ 308 (327)
T 2xbg_A 239 GELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVK----KVPSNFYKI--LFFS--PDQGFI 308 (327)
T ss_dssp CCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGT----TSSSCCCEE--EEEE--TTEEEE
T ss_pred EeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccC----CCCCCeEEE--EEEC--CCceEE
Confidence 333211 1234688999998888777654 6766 45556665443332111 112345555 4433 456778
Q ss_pred EecCCcEEEEeC
Q 001163 1090 GLTDGGVYIIEP 1101 (1134)
Q Consensus 1090 ~~~Dg~v~vW~~ 1101 (1134)
++.+|.|.-++-
T Consensus 309 ~G~~G~i~~~~~ 320 (327)
T 2xbg_A 309 LGQKGILLRYVT 320 (327)
T ss_dssp ECSTTEEEEECC
T ss_pred EcCCceEEEEcC
Confidence 889998776653
No 276
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.25 E-value=0.0027 Score=69.78 Aligned_cols=248 Identities=12% Similarity=0.000 Sum_probs=149.1
Q ss_pred CCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001163 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 436 (1134)
Q Consensus 357 ~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~ 436 (1134)
+..+|.+..+++ +|+++ ....|+..++........ .. ....+..++|++.+..|...
T Consensus 34 d~~~C~~~~~~~-~ll~~--~~~~I~~i~~~g~~~~~~-------------------~~-~~~~~~~l~~d~~~~~ly~~ 90 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTLL-------------------LN-NLENAIALDFHHRRELVFWS 90 (349)
T ss_dssp TSSCEEESSSCC-EEEEE--CBSCEEEECTTSCCEEEE-------------------EC-SCSCEEEEEEETTTTEEEEE
T ss_pred CCCcccccccCc-eeEee--cccceEEEeCCCCeeEEe-------------------ec-CCCceEEEEEeccccEEEEE
Confidence 345677777744 35443 334587778765432210 11 23458899999866655554
Q ss_pred -eCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEec
Q 001163 437 -YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICP 515 (1134)
Q Consensus 437 -s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 515 (1134)
...+.|..++..++.... .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....+++
T Consensus 91 D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iav 166 (349)
T 3v64_C 91 DVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL 166 (349)
T ss_dssp ETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEE
T ss_pred eccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEE
Confidence 567889999988764222 12222334578899986664 4566666789999997654433333334455678888
Q ss_pred cccCCccEEEEecCC-CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEec
Q 001163 516 HHKENIQFIFSTATD-GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594 (1134)
Q Consensus 516 ~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 594 (1134)
++.. +.++++-..+ +.|..++++.................++++|++..|+.+-. +...|..+|+........+.
T Consensus 167 dp~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~~ 242 (349)
T 3v64_C 167 HPME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVIS 242 (349)
T ss_dssp ETTT-TEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEC
T ss_pred ecCc-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEEe
Confidence 6533 3555555555 78888887754333333223345688999998888877643 24579999986543333333
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Q 001163 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID 637 (1134)
Q Consensus 595 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 637 (1134)
... .....+++. .+..+++-...+.|..++..+|+....+.
T Consensus 243 ~~~-~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 243 QGL-PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp SSC-SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCC-CCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 222 245667773 34344444467788888866666666554
No 277
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.23 E-value=0.0012 Score=71.52 Aligned_cols=206 Identities=9% Similarity=-0.033 Sum_probs=128.8
Q ss_pred CCCeeEEEEcCCCCeEEEee--CCeEEEEEccC----CeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc
Q 001163 843 EDAVPCFALSKNDSYVMSAS--GGKISLFNMMT----FKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV 916 (1134)
Q Consensus 843 ~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~----~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~ 916 (1134)
...+..++|++++..|..+. ++.|..+++.+ ......+.........+++.+.++.+.++-...+.|.++++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 34578999998877776665 58899999876 2222223323345688999874555666666788999999875
Q ss_pred ceEEEeccCccCceEEEEEeeCCCEEEEEeC-C-CcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE
Q 001163 917 DEVKTKLKGHQKRITGLAFSNTLNVLVSSGA-D-SQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA 994 (1134)
Q Consensus 917 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~ 994 (1134)
......+...-.....+++.|.+..|+.+.. . +.|...+++.... ..+ ..... .....+++++++..|..
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~---~~~-~~~~~----~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSL-VTENI----QWPNGITLDLLSGRLYW 180 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---EEE-ECSSC----SCEEEEEEETTTTEEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe---EEE-EECCC----CCceEEEEeccCCEEEE
Confidence 4332223323356789999986666555443 2 6788888765321 111 11111 34688999998888777
Q ss_pred E--eeceEEEEeCCCcccceeeccC-CCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeec
Q 001163 995 V--HETQIAIYEAPKLECLKQFVPR-EASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRI 1058 (1134)
Q Consensus 995 ~--~d~~i~iwd~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~ 1058 (1134)
+ ..+.|..+|... .....+... ..-.....+++. .+.++++-...+.|..++..+|+....+
T Consensus 181 ~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 181 VDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 5 457899999874 333333211 123456778884 4555556666788999998777765444
No 278
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.23 E-value=7.2e-05 Score=92.01 Aligned_cols=195 Identities=10% Similarity=0.039 Sum_probs=110.8
Q ss_pred CeeEEEEc-CCCCeEEEee--CC----eEEEEEccCC-eEEEE-ecCCCCCeEEEEEcCCCCcEEEEEeCC-----CcEE
Q 001163 845 AVPCFALS-KNDSYVMSAS--GG----KISLFNMMTF-KTMTT-FMPPPPAATFLAFHPQDNNIIAIGMED-----SSIQ 910 (1134)
Q Consensus 845 ~v~~v~~s-~dg~~la~~s--dg----~i~lwd~~~~-~~~~~-~~~~~~~v~~l~~sp~~~~~la~g~~d-----g~i~ 910 (1134)
.+...+|| |||++||... +| +|+++|+.++ +.+.. +. .....++|+| |++.|+....| ..|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCEEE
Confidence 67789999 9999998765 23 4999999988 63211 11 1134689999 77777766654 3688
Q ss_pred EEEcccceE--EEecc-CccCceEEEEEeeCCCEEEEEeC---CCcEEEEECCCCccccceeeeecCCCCCCCCCceEEE
Q 001163 911 IYNVRVDEV--KTKLK-GHQKRITGLAFSNTLNVLVSSGA---DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQ 984 (1134)
Q Consensus 911 iwd~~~~~~--~~~l~-~h~~~V~~l~~s~d~~~l~s~s~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 984 (1134)
++++.+++. ...+. .+..-...+.|||||++|+..+. ...|.++|+.++.... ....+..+.. .....+.
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~-~~~~l~~~~~---~~~~s~~ 326 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHN-TLEIVRPREK---GVRYDVQ 326 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCC-CEEESSCCCT---TCCEEEE
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCc-eeEEeecCCC---CceEEEe
Confidence 888876531 22222 22334668899999999886653 3468888988752111 0012222211 2233444
Q ss_pred EcCCCCEEEE-Eee-----ceEEEEeCCCccccee-eccCCCccCEEEEEEccCCCEEEEEecCCcE--EEeec
Q 001163 985 FHLDQTHLLA-VHE-----TQIAIYEAPKLECLKQ-FVPREASGPITHATYSCDSQSIYVAFEEGSV--GVLTA 1049 (1134)
Q Consensus 985 fs~dg~~l~~-~~d-----~~i~iwd~~~~~~~~~-~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i--~vwd~ 1049 (1134)
|+. |..|+. +.. ..|..+|+.++..... +........+..+.+. ++.++++...|+.. .++++
T Consensus 327 ~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 327 MHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred eee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 443 555544 432 2577777765322233 3311212244555554 33445667777764 45554
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.22 E-value=0.0024 Score=69.05 Aligned_cols=232 Identities=8% Similarity=-0.006 Sum_probs=141.2
Q ss_pred EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC---CceeE-EecCCC
Q 001163 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT---GTKQY-IFEGHE 507 (1134)
Q Consensus 432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~---~~~~~-~~~~h~ 507 (1134)
+|+.+.. ..|+..|+.+.+... +-........++|++++.. ++++-..++.|..+++.. +.... .+...-
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~----~~~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECC-CeEEEEECCCcceEe----hhcCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 3444433 348888988765332 2223456789999987764 455666678999999876 12222 232222
Q ss_pred cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC
Q 001163 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (1134)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 587 (1134)
.....+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+.+... ....|...++..
T Consensus 77 ~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~dG- 152 (316)
T 1ijq_A 77 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNG- 152 (316)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTS-
T ss_pred CCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcCCC-
Confidence 34467777543 33566666778899999987544333333334467899999977777665432 125688888753
Q ss_pred eeEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcE
Q 001163 588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI 666 (1134)
Q Consensus 588 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i 666 (1134)
.....+....-.....+++++++..|+.+. ..+.|..+|++...................+++. .+.++++-...+.|
T Consensus 153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V 231 (316)
T 1ijq_A 153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 231 (316)
T ss_dssp CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeE
Confidence 333333222223577899999888877776 6679999999754333333322222344577775 35566666667888
Q ss_pred EEEEccCC
Q 001163 667 KILANADG 674 (1134)
Q Consensus 667 ~iw~~~~~ 674 (1134)
..++..++
T Consensus 232 ~~~~~~~g 239 (316)
T 1ijq_A 232 FSANRLTG 239 (316)
T ss_dssp EEEETTTC
T ss_pred EEEeCCCC
Confidence 88887666
No 280
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.21 E-value=0.0019 Score=72.05 Aligned_cols=247 Identities=12% Similarity=-0.000 Sum_probs=149.1
Q ss_pred CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE-EE
Q 001163 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG-VA 436 (1134)
Q Consensus 358 ~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la-s~ 436 (1134)
.-+|.+..+.+ +|+++ ....|+..++..+.... +......+..++|++.+..|. +-
T Consensus 78 ~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~--------------------~~~~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEE--------------------EECSCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccc-eeEee--cCccceeeccCCCcEEE--------------------EecCCCccEEEEEecCCCeEEEEe
Confidence 34466666633 34433 33568888887654322 111234688999998655555 44
Q ss_pred eCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEecc
Q 001163 437 YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPH 516 (1134)
Q Consensus 437 s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 516 (1134)
...+.|..++..++.... .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....++++
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 567889999988764222 12222234567899886664 45666667789888876544333333334567788886
Q ss_pred ccCCccEEEEecCC-CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecC
Q 001163 517 HKENIQFIFSTATD-GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG 595 (1134)
Q Consensus 517 ~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 595 (1134)
+.. +.++++-... +.|..++++.................++++|++..|+.+-. ....|..+|+........+..
T Consensus 211 p~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 211 PME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp TTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred cCC-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence 543 3455555444 77888887754443333333345678999998888877642 245799999865433333332
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Q 001163 596 LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID 637 (1134)
Q Consensus 596 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 637 (1134)
.. .....+++ ..+..+++-...+.|..++..+|+.+..+.
T Consensus 287 ~~-~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 287 GL-PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp SC-SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CC-CCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 22 24566777 334444444477888888877777666665
No 281
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.18 E-value=0.0001 Score=89.28 Aligned_cols=237 Identities=12% Similarity=0.009 Sum_probs=128.1
Q ss_pred CCeeEEEEcCCCCeEEEee--CCeEEEEEccCCeEEEEecCCCCC-eEEEEEcCCCCcEEEEEe-CC-----CcEEEEEc
Q 001163 844 DAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPA-ATFLAFHPQDNNIIAIGM-ED-----SSIQIYNV 914 (1134)
Q Consensus 844 ~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~~la~g~-~d-----g~i~iwd~ 914 (1134)
....++++..+|++++.|+ ++.+.+||..+.+-...-..+... -.++++.+ ++++++.|+ .+ ..+.+||.
T Consensus 243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEET
T ss_pred CccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCC
Confidence 3345678889999999987 467999999876433222112222 23456666 788999988 44 47999999
Q ss_pred ccceEEEe-----ccCccCceEEEEEeeCCCEEEEEeCCC---------cEEEEECCCCccccceeeeecCC-C--CCCC
Q 001163 915 RVDEVKTK-----LKGHQKRITGLAFSNTLNVLVSSGADS---------QLCVWSTDGWEKQASKFLTIPNG-R--TASA 977 (1134)
Q Consensus 915 ~~~~~~~~-----l~~h~~~V~~l~~s~d~~~l~s~s~Dg---------~i~iwd~~~~~~~~~~~~~~~~~-~--~~~~ 977 (1134)
.+++-... ....... ....+..+++..+.++.|+ .+..||..+..-.. ....... + ....
T Consensus 322 ~t~~W~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~--~~~~~~~~~~~~~~~ 398 (656)
T 1k3i_A 322 SSKTWTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK--SAGKRQSNRGVAPDA 398 (656)
T ss_dssp TTTEEEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE--EEEECEETTEECCCC
T ss_pred CCCcceeCCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee--cCCccccccccCCCC
Confidence 87653321 0000000 0011223455555555443 46788887644211 1111100 0 0000
Q ss_pred CCceEEEEcC-CCCEEEEE-eec-----------eEEEEeCCCcccceeeccCCCccC-EEEEEEccCCCEEEEEecC--
Q 001163 978 LADTRVQFHL-DQTHLLAV-HET-----------QIAIYEAPKLECLKQFVPREASGP-ITHATYSCDSQSIYVAFEE-- 1041 (1134)
Q Consensus 978 ~~v~~l~fs~-dg~~l~~~-~d~-----------~i~iwd~~~~~~~~~~~~~~h~~~-v~~~~~s~dg~~l~s~s~D-- 1041 (1134)
..-.++.|.. ++++++.| .++ .|.+||..+..........-+... -.+++..+||++++.|+.+
T Consensus 399 ~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~ 478 (656)
T 1k3i_A 399 MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRG 478 (656)
T ss_dssp BTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBC
T ss_pred CCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccC
Confidence 1234455543 67777774 321 688888877654332200111222 2345667899999999865
Q ss_pred ---------CcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEec
Q 001163 1042 ---------GSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLT 1092 (1134)
Q Consensus 1042 ---------g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~ 1092 (1134)
..+.+||..+.+... +. ....+ +...-+....| |++.++.|+.
T Consensus 479 ~~~~~~~~~~~v~~ydp~t~~W~~-~~-~~~~~-----R~~hs~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 479 IPFEDSTPVFTPEIYVPEQDTFYK-QN-PNSIV-----RVYHSISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp CTTCCCSBCCCCEEEEGGGTEEEE-CC-CCSSC-----CCTTEEEEECT-TSCEEEEECC
T ss_pred cCcCCCCcccceEEEcCCCCceee-cC-CCCCc-----cccccHhhcCC-CcEEEecCCC
Confidence 468999998766432 22 11111 11111223346 7889999885
No 282
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.18 E-value=0.0019 Score=71.01 Aligned_cols=241 Identities=10% Similarity=0.001 Sum_probs=148.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce
Q 001163 420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK 499 (1134)
Q Consensus 420 ~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~ 499 (1134)
..+|.+..++ .+|+.+. ...|+..++.+..... .+. ....+..++|++.+.. ++++-...+.|..+++..+..
T Consensus 35 ~~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~~~---~~~-~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 35 RRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTL---LLN-NLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNV 107 (349)
T ss_dssp SSCEEESSSC-CEEEEEC-BSCEEEECTTSCCEEE---EEC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSC
T ss_pred CCcccccccC-ceeEeec-ccceEEEeCCCCeeEE---eec-CCCceEEEEEeccccE-EEEEeccCCceEEEecCCCCc
Confidence 4456666664 3444443 3447777876654222 122 3345789999987664 455656678999999876654
Q ss_pred eEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEE
Q 001163 500 QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYL 579 (1134)
Q Consensus 500 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 579 (1134)
...+.........+++.+. ++.++++-...+.|.+.+++.................+++.|.+..|+...... ...|
T Consensus 108 ~~~~~~~~~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~--~~~I 184 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN--TPRI 184 (349)
T ss_dssp EEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS--SCEE
T ss_pred eEEEeCCCCCccEEEEecC-CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC--CCEE
Confidence 4333322234456777543 335667777778999999875544444433344678999999777776654321 2568
Q ss_pred EEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEE
Q 001163 580 VEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 658 (1134)
Q Consensus 580 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~ 658 (1134)
...++.... ...+....-.....++++|++..|+.+. ..+.|..+|++.......+... ......+++ .++.+++
T Consensus 185 ~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~ly~ 260 (349)
T 3v64_C 185 EASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYW 260 (349)
T ss_dssp EEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTEEEE
T ss_pred EEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCEEEE
Confidence 888876433 3333222222568899998887777766 6678999998764433333322 234567777 3455555
Q ss_pred EEECCCcEEEEEccCC
Q 001163 659 VSTNDNGIKILANADG 674 (1134)
Q Consensus 659 ~~~~dg~i~iw~~~~~ 674 (1134)
+-...+.|..++..++
T Consensus 261 td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 261 TDWHTKSINSANKFTG 276 (349)
T ss_dssp EETTTTEEEEEETTTC
T ss_pred ecCCCCeEEEEEccCC
Confidence 5556777877775555
No 283
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.17 E-value=0.0076 Score=65.51 Aligned_cols=282 Identities=9% Similarity=-0.012 Sum_probs=148.6
Q ss_pred ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001163 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (1134)
Q Consensus 354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 433 (1134)
.....+.+|.|.+++. ++++| .+|.| +...+.|+.-..... ........+.+|.|++ +..+
T Consensus 33 ~~~~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~tW~~~~~---------------~~~~~~~~~~~i~~~~-~~~~ 93 (327)
T 2xbg_A 33 PTTATILDMSFIDRHH-GWLVG-VNATL-METRDGGQTWEPRTL---------------VLDHSDYRFNSVSFQG-NEGW 93 (327)
T ss_dssp SCSSCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSSCEECCC---------------CCSCCCCEEEEEEEET-TEEE
T ss_pred CCCCcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCCCeECCC---------------CCCCCCccEEEEEecC-CeEE
Confidence 3456799999988777 44554 45654 334444542221000 0112345788999986 4444
Q ss_pred EEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCcee-EEecCCCcCEEE
Q 001163 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ-YIFEGHESPVYS 512 (1134)
Q Consensus 434 as~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~h~~~v~~ 512 (1134)
+ ++.++.|.. ..+.|+.-........+.+.+..+.+.+++. .++.+ .++.|.. ..+.|+.- .....+...+..
T Consensus 94 ~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~ 167 (327)
T 2xbg_A 94 I-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRN 167 (327)
T ss_dssp E-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEE
T ss_pred E-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEE
Confidence 4 455664433 3344443332211112445678888887775 45544 4554432 12234322 223345567888
Q ss_pred EeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEE
Q 001163 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT 592 (1134)
Q Consensus 513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 592 (1134)
+.+.+ ++.+++.+...+..+-+|-....-..........+..+.+.++++.++.+. + +.+++.+...++.-..
T Consensus 168 ~~~~~--~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-~----G~~~~s~~D~G~tW~~ 240 (327)
T 2xbg_A 168 LNRSP--SGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-G----GKIAFSDPDNSENWGE 240 (327)
T ss_dssp EEECT--TSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEET-T----TEEEEEETTEEEEECC
T ss_pred EEEcC--CCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeC-C----ceEEEecCCCCCeeEe
Confidence 87754 446666665443333333211111111122344778889999988766542 2 2355553222332222
Q ss_pred ecCC---CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC-CCCCCcceEEEcCCCcEEEEEECCCcEEE
Q 001163 593 YHGL---GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD-GGLQASPCIRFNKEGILLAVSTNDNGIKI 668 (1134)
Q Consensus 593 ~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~~~~~dg~i~i 668 (1134)
+... ....+..+.+.+++..++++ .+|.| .+..+.|+.-..+... .....+.++.|.+++. +++++.+|.|.-
T Consensus 241 ~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~ 317 (327)
T 2xbg_A 241 LLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLR 317 (327)
T ss_dssp CBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEE
T ss_pred ccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEE
Confidence 2211 11257788898877655554 46766 4566666665555421 1134578888875554 556677887766
Q ss_pred EE
Q 001163 669 LA 670 (1134)
Q Consensus 669 w~ 670 (1134)
++
T Consensus 318 ~~ 319 (327)
T 2xbg_A 318 YV 319 (327)
T ss_dssp EC
T ss_pred Ec
Confidence 54
No 284
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.16 E-value=0.0016 Score=72.68 Aligned_cols=240 Identities=9% Similarity=-0.024 Sum_probs=147.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCcee
Q 001163 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ 500 (1134)
Q Consensus 421 V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 500 (1134)
-.|.+..+ ..+|+.+.. ..|+..++.++.... +......+..++|.+.+.. ++++-...+.|..+++..+...
T Consensus 79 ~~C~~~~~-~~~l~~~~~-~~I~~i~~~~~~~~~----~~~~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~ 151 (386)
T 3v65_B 79 RSCKALGP-EPVLLFANR-IDIRQVLPHRSEYTL----LLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVE 151 (386)
T ss_dssp SCEEECSS-CCEEEEECB-SCEEEECTTSCCCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCEE
T ss_pred CeECCccc-cceeEeecC-ccceeeccCCCcEEE----EecCCCccEEEEEecCCCe-EEEEeCCCCcEEEEecCCCCcE
Confidence 34555555 334444433 458888887654322 2223345889999987664 4556667789999998766543
Q ss_pred EEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEE
Q 001163 501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 580 (1134)
Q Consensus 501 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 580 (1134)
..+.........+++.+. ++.++++-...+.|.+.+++.................+++.|.+..|+..-.. ....|.
T Consensus 152 ~~~~~~~~~p~glavd~~-~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~--~~~~I~ 228 (386)
T 3v65_B 152 EVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG--NTPRIE 228 (386)
T ss_dssp EEECSSCSCCCCEEEETT-TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS--SSCEEE
T ss_pred EEEeCCCCCccEEEEEeC-CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC--CCCEEE
Confidence 333322233455666543 33566777777888888887544444443333467889999988777765432 125688
Q ss_pred EEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEE
Q 001163 581 EWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAV 659 (1134)
Q Consensus 581 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~ 659 (1134)
.+++............ -.....++++|++..|+.+. ..+.|..+|+........+... ......+++ .++.++++
T Consensus 229 r~~~dG~~~~~~~~~~-~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly~t 304 (386)
T 3v65_B 229 ASSMDGSGRRIIADTH-LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYWT 304 (386)
T ss_dssp EEETTSCSCEEEECSS-CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEEEE
T ss_pred EEeCCCCCcEEEEECC-CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEEEe
Confidence 8887654333322222 22567899998877777766 6678999998754443333321 334567777 34556666
Q ss_pred EECCCcEEEEEccCC
Q 001163 660 STNDNGIKILANADG 674 (1134)
Q Consensus 660 ~~~dg~i~iw~~~~~ 674 (1134)
-...+.|..++..++
T Consensus 305 d~~~~~V~~~~~~~G 319 (386)
T 3v65_B 305 DWHTKSINSANKFTG 319 (386)
T ss_dssp ETTTTEEEEEETTTC
T ss_pred eCCCCeEEEEECCCC
Confidence 666788888876565
No 285
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.13 E-value=0.00036 Score=79.10 Aligned_cols=248 Identities=7% Similarity=-0.025 Sum_probs=144.8
Q ss_pred CeeEEEEcCC--CCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCC---C-cEEEEEcccc
Q 001163 845 AVPCFALSKN--DSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED---S-SIQIYNVRVD 917 (1134)
Q Consensus 845 ~v~~v~~s~d--g~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~d---g-~i~iwd~~~~ 917 (1134)
....++++|+ +..|..+. .+.|+.+|..++..... .........+++++ +++++++.... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 3468999984 44455554 58899999987766544 33556689999999 77755544321 1 2333333222
Q ss_pred eE-EEeccCccCceEEEEEee-CCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE
Q 001163 918 EV-KTKLKGHQKRITGLAFSN-TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV 995 (1134)
Q Consensus 918 ~~-~~~l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~ 995 (1134)
.. ...+. .-.....+++++ +|.+.++-..++.|+.++..++.... ....... . .....++|+|+|++|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~~~~~~~--~---~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-EEVMMDT--K---GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-EEEECSC--C---SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-EEeccCC--C---CCcccEEEeCCCCEEEEE
Confidence 11 01111 123346688999 67766676677889999988654211 1111111 1 123469999999977765
Q ss_pred --eeceEEEEeCC--Ccccc--eeecc----CCC---------ccCEEEEEE---------ccCCCEEEEEecCCcEEEe
Q 001163 996 --HETQIAIYEAP--KLECL--KQFVP----REA---------SGPITHATY---------SCDSQSIYVAFEEGSVGVL 1047 (1134)
Q Consensus 996 --~d~~i~iwd~~--~~~~~--~~~~~----~~h---------~~~v~~~~~---------s~dg~~l~s~s~Dg~i~vw 1047 (1134)
..+.|+.++.. ++... ..+.. .+. -.....+++ .++|.+.++-...+.|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 45789998765 23211 11110 011 124678999 6777777776677889999
Q ss_pred ecCCCcceeecCCCcccCCCCCC--------CceeEEEEecCCCCCEEEEEecCCcEEEEeCC
Q 001163 1048 TASTLRLRCRINPTAYLPTNPSL--------RVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus 1048 d~~~~~~~~~~~~~~~~~~~h~~--------~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~ 1102 (1134)
+. +|..............|... --.+..+++.|.++.++++=...+.|+.+++.
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 84 56544333221100001000 12366778885567777777777888888764
No 286
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.11 E-value=0.00046 Score=78.28 Aligned_cols=246 Identities=11% Similarity=0.022 Sum_probs=142.8
Q ss_pred CeeEEEEcC-CCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeC-CC----cEEEEEcccc
Q 001163 845 AVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGME-DS----SIQIYNVRVD 917 (1134)
Q Consensus 845 ~v~~v~~s~-dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-dg----~i~iwd~~~~ 917 (1134)
....++++| ++..|.++. .+.|+.+|+.++....... .......++|++ ++++|+++.. ++ .+.+++. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 456889998 455666665 5789999998766544433 556688999999 7775555543 22 3343443 33
Q ss_pred eEE--EeccCccCceEEEEEee-CCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE
Q 001163 918 EVK--TKLKGHQKRITGLAFSN-TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA 994 (1134)
Q Consensus 918 ~~~--~~l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~ 994 (1134)
... ..+.. ......++++| +|.++++-..++.|..++..++... ........ .....++|+|+|++|.+
T Consensus 215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~--~~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT--PLFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE--EEEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE--EEEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 221 22221 23356788999 7777777777888999998865421 11222111 23678999999997766
Q ss_pred E--eeceEEEEeCCC--ccc--ceeecc----CCC---------ccCEE-EEEEc--------cCCCEEEEEecCCcEEE
Q 001163 995 V--HETQIAIYEAPK--LEC--LKQFVP----REA---------SGPIT-HATYS--------CDSQSIYVAFEEGSVGV 1046 (1134)
Q Consensus 995 ~--~d~~i~iwd~~~--~~~--~~~~~~----~~h---------~~~v~-~~~~s--------~dg~~l~s~s~Dg~i~v 1046 (1134)
+ ..+.|..++... ++. +..+.. .+. -.... .++.. ++|.+.++=...+.|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 4 567898887653 221 111110 000 11233 45553 34666666566788999
Q ss_pred eecCCCcceeecCCCcccCCCC--------CCCceeEEEEecCCCCCEEEEEecCCcEEEEeCC
Q 001163 1047 LTASTLRLRCRINPTAYLPTNP--------SLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus 1047 wd~~~~~~~~~~~~~~~~~~~h--------~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~ 1102 (1134)
++ .+|+..........-..|. ..--.+..+++.|+++.++++-...+.|+.++++
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 98 4565443332210000010 0011466778888556677766667788888764
No 287
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.10 E-value=0.0012 Score=67.71 Aligned_cols=191 Identities=8% Similarity=0.052 Sum_probs=124.6
Q ss_pred CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001163 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (1134)
Q Consensus 356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las 435 (1134)
...+..++|+|++..|+++...++.|...|.. ++.+.... +.+ ....-.|++.+++.++++
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~vs 86 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVIS 86 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEEE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEEE
Confidence 46799999999988888888889999999998 76655321 122 256788999999988777
Q ss_pred EeCCCEEEEEEccCCceee--eeeeee----cCCCCEEEEEEecCCCceEEEEEeCCC--eEEEEEC-CCCceeEEec--
Q 001163 436 AYSKHIVHLYTYHGGDELR--NHLEIE----AHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDA-VTGTKQYIFE-- 504 (1134)
Q Consensus 436 ~s~dg~v~iwd~~~~~~~~--~~~~l~----~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~-~~~~~~~~~~-- 504 (1134)
.-.++.+.++++.....+. ....+. ........++|+|+++. |+++.... .|..|+- ..+..+..+.
T Consensus 87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l~i~~~~ 164 (255)
T 3qqz_A 87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNELHISKDK 164 (255)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCceeeecch
Confidence 6677889999887654322 111111 23455789999999985 33344333 4455541 1111222221
Q ss_pred -----CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC---------CCeeEEEECcCCCEEEEE
Q 001163 505 -----GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG---------HSSTMMAYSADGARLFSC 569 (1134)
Q Consensus 505 -----~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~ 569 (1134)
.+...+.++++++.. +.+++.....+.+.++|... +.+..+.... ..-..++|.++|+..+++
T Consensus 165 ~~~~~~~~~d~S~l~~dp~t-g~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs 241 (255)
T 3qqz_A 165 ALQRQFTLDDVSGAEFNQQK-NTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS 241 (255)
T ss_dssp HHHHTCCSSCCCEEEEETTT-TEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred hhccccccCCceeEEEcCCC-CeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence 133456788888754 47778888888899998763 3333333321 256789999999865553
No 288
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.07 E-value=0.0071 Score=67.71 Aligned_cols=232 Identities=8% Similarity=0.005 Sum_probs=145.5
Q ss_pred EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC----ceeEEecCCC
Q 001163 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG----TKQYIFEGHE 507 (1134)
Q Consensus 432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~~h~ 507 (1134)
+|+.+. ...|+..++.+..... +......+..++|++.+.. ++++-...+.|..+++... .....+....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~----~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEec-cceeEEEccCCcceeE----eccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 444443 4678888888764322 2334567889999987664 4555556788999997652 2223333334
Q ss_pred cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC
Q 001163 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (1134)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 587 (1134)
.....+++.+. ++.+.++-...+.|.+.+++.......+.........+++.|.+..|+..-... ...|...++...
T Consensus 159 ~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~--~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT--PAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSS--SCCEEEEETTSC
T ss_pred CCcccEEEEec-CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCC--CCEEEEEeCCCC
Confidence 55677887653 336667777788999998875544444443444678999999777776653221 245888887654
Q ss_pred eeEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcE
Q 001163 588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI 666 (1134)
Q Consensus 588 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i 666 (1134)
.........- .....+++++++..|+.+. ..+.|..+|++.......+...........+++. .+.++.+-...+.|
T Consensus 236 ~~~~~~~~~l-~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 236 DIYSLVTENI-QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp SCEEEECSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred ccEEEEECCC-CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 3333333222 2678899999888888776 6678999998765544444432223334566663 34555566667888
Q ss_pred EEEEccCC
Q 001163 667 KILANADG 674 (1134)
Q Consensus 667 ~iw~~~~~ 674 (1134)
..++..++
T Consensus 314 ~~~~~~~G 321 (400)
T 3p5b_L 314 FSANRLTG 321 (400)
T ss_dssp EEEESSSC
T ss_pred EEEEcCCC
Confidence 88887666
No 289
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.05 E-value=0.0011 Score=68.18 Aligned_cols=203 Identities=11% Similarity=0.083 Sum_probs=131.7
Q ss_pred CCCCeeEEEEcCCCCeEEEee--CCeEEEEEccCCeEEEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce
Q 001163 842 PEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMP-PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE 918 (1134)
Q Consensus 842 h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~ 918 (1134)
-...+..++++|++..|.+.. ++.|...|.. ++.++.+.- -....-.+++.+ ++.++++.-.++.+.++++....
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTC
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCC
Confidence 456799999999877666544 6789999997 888887642 235688899988 77777776677889999886543
Q ss_pred E---EEecc------CccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccc--cceeeee--cCCCCCCCCCceEEEE
Q 001163 919 V---KTKLK------GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQ--ASKFLTI--PNGRTASALADTRVQF 985 (1134)
Q Consensus 919 ~---~~~l~------~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~--~~~~~~~--~~~~~~~~~~v~~l~f 985 (1134)
. +.... .+....-.|+|+|+++.|+++.+.....+|.++. ... ....... ..+.. ....+..+++
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g-~~~~~~l~i~~~~~~~~~~-~~~d~S~l~~ 180 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG-LLSSNELHISKDKALQRQF-TLDDVSGAEF 180 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES-TTCSSCCEEEECHHHHHTC-CSSCCCEEEE
T ss_pred eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc-cccCCceeeecchhhcccc-ccCCceeEEE
Confidence 2 22221 2344568999999998888887766667776652 111 0111110 00000 0134688999
Q ss_pred cCCCCEEEE-E-eeceEEEEeCCCcccceeeccC-CC------ccCEEEEEEccCCCEEEEEecCCcEEEeecC
Q 001163 986 HLDQTHLLA-V-HETQIAIYEAPKLECLKQFVPR-EA------SGPITHATYSCDSQSIYVAFEEGSVGVLTAS 1050 (1134)
Q Consensus 986 s~dg~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~-~h------~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~ 1050 (1134)
.|....|.+ + ..+.+.++|.. ++.+..+... +. -...-.|+|.++|++ +..++-+.+++|.-.
T Consensus 181 dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l-yIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 181 NQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI-YIVSEPNRFYRFTPQ 252 (255)
T ss_dssp ETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE-EEEETTTEEEEEEC-
T ss_pred cCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCE-EEEcCCceEEEEEec
Confidence 997666555 5 45788888876 5555555432 21 136689999999984 445777777776543
No 290
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.03 E-value=0.004 Score=69.78 Aligned_cols=207 Identities=9% Similarity=-0.027 Sum_probs=132.2
Q ss_pred CCCeeEEEEcCCCCeEEEee--CCeEEEEEccCC----eEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc
Q 001163 843 EDAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV 916 (1134)
Q Consensus 843 ~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~----~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~ 916 (1134)
...+..++|++.+..|..++ .+.|+.+++... .....+.........+++.+.++.+.++-...+.|.+.++..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 45678999998777777665 578999998652 233334334456789999874566666666778999999876
Q ss_pred ceEEEeccCccCceEEEEEeeCCCEEEEEe--CCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE
Q 001163 917 DEVKTKLKGHQKRITGLAFSNTLNVLVSSG--ADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA 994 (1134)
Q Consensus 917 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~ 994 (1134)
......+...-.....|++.|.+..|+.+. ..+.|...+++..... .+ ...+. .....+++++++..|..
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~---~~-~~~~l----~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY---SL-VTENI----QWPNGITLDLLSGRLYW 262 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE---EE-ECSSC----SCEEEEEEETTTTEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE---EE-EECCC----CceEEEEEEeCCCEEEE
Confidence 544333333344578999998766665544 2467888888763311 11 11111 34688999998888887
Q ss_pred E--eeceEEEEeCCCcccceeecc-CCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecC
Q 001163 995 V--HETQIAIYEAPKLECLKQFVP-REASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRIN 1059 (1134)
Q Consensus 995 ~--~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~ 1059 (1134)
+ ..+.|..+|+.... ...+.. ...-....++++. .+.++++-...+.|..+|..+|+.+..+.
T Consensus 263 aD~~~~~I~~~d~dG~~-~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EETTTTEEEEEETTSCC-CEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EECCCCEEEEEeCCCCc-cEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 5 45789999987433 333321 1223455677773 34445555666889999987887655544
No 291
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.88 E-value=0.002 Score=68.49 Aligned_cols=197 Identities=10% Similarity=0.142 Sum_probs=123.6
Q ss_pred CCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCC---CCc---EEEEEe-C--CCcEEEEEcc--cceEEE
Q 001163 854 NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ---DNN---IIAIGM-E--DSSIQIYNVR--VDEVKT 921 (1134)
Q Consensus 854 dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~---~~~---~la~g~-~--dg~i~iwd~~--~~~~~~ 921 (1134)
...+++... .+.+.+||+ +|+.+..+.. +.++.+..-|. +++ ++++.. . +++|++|++. +++ +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 334544444 678999999 8888888853 67788777661 111 233333 3 5799999873 443 44
Q ss_pred eccC------cc-CceEEEEE--eeC-CC-EEEEEeCCCcEEEEECCC---CccccceeeeecCCCCCCCCCceEEEEcC
Q 001163 922 KLKG------HQ-KRITGLAF--SNT-LN-VLVSSGADSQLCVWSTDG---WEKQASKFLTIPNGRTASALADTRVQFHL 987 (1134)
Q Consensus 922 ~l~~------h~-~~V~~l~~--s~d-~~-~l~s~s~Dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~l~fs~ 987 (1134)
.+.. .. ..+..+++ ++. ++ +++....+|.+..|++.. +.......-.+..+ ..+..+...+
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-----sq~EgcvvDd 189 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-----SQTEGMAADD 189 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-----SCEEEEEEET
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-----CCcceEEEcC
Confidence 4421 11 55667887 664 43 688888899999999843 22222112222222 3578899999
Q ss_pred CCCEEEEEe-eceEEEEeCC-----CcccceeeccCCCccCEEEEEE--ccCCC-EEEEEe-cCCcEEEeecC-CCccee
Q 001163 988 DQTHLLAVH-ETQIAIYEAP-----KLECLKQFVPREASGPITHATY--SCDSQ-SIYVAF-EEGSVGVLTAS-TLRLRC 1056 (1134)
Q Consensus 988 dg~~l~~~~-d~~i~iwd~~-----~~~~~~~~~~~~h~~~v~~~~~--s~dg~-~l~s~s-~Dg~i~vwd~~-~~~~~~ 1056 (1134)
....|+++. +..|..|+.+ +++.+..+....-...+..|++ .++|+ ||++++ .++++.|||.. +.+.+.
T Consensus 190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg 269 (355)
T 3amr_A 190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA 269 (355)
T ss_dssp TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence 888888874 4446666654 2344444422222447888888 56666 666666 56899999996 677776
Q ss_pred ecC
Q 001163 1057 RIN 1059 (1134)
Q Consensus 1057 ~~~ 1059 (1134)
.+.
T Consensus 270 ~f~ 272 (355)
T 3amr_A 270 DFR 272 (355)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 292
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.82 E-value=0.0024 Score=72.34 Aligned_cols=240 Identities=7% Similarity=0.101 Sum_probs=133.8
Q ss_pred CCEEEEEEcC-CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC-CC----eEEEE
Q 001163 419 ASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-DR----VIKVW 492 (1134)
Q Consensus 419 ~~V~~l~~sp-d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-d~----~i~iw 492 (1134)
.....|+|+| ++..|.++...+.|+.+|..++.... +.........++|+++++. |+.+.. ++ .+.+.
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~----~~~~~~~P~~ia~d~~G~~--lyvad~~~~~~~~~v~~~ 210 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST----VYSGLSKVRTICWTHEADS--MIITNDQNNNDRPNNYIL 210 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE----EECCCSCEEEEEECTTSSE--EEEEECCSCTTSEEEEEE
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE----EecCCCCcceEEEeCCCCE--EEEEeCCCCcccceEEEE
Confidence 3567899998 46666666555889999998765322 3334456889999999984 444433 22 23334
Q ss_pred ECCCCcee--EEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecC-CCCCeeEEEECcCCCEEEEE
Q 001163 493 DAVTGTKQ--YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-PGHSSTMMAYSADGARLFSC 569 (1134)
Q Consensus 493 d~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~ 569 (1134)
+ ..+... ..+.. ......+++++. ++.++++-..++.|..++............ ....-..++|+|+|++|+.+
T Consensus 211 ~-~~g~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~ 287 (430)
T 3tc9_A 211 T-RESGFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIV 287 (430)
T ss_dssp E-GGGTSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred e-CCCceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEE
Confidence 4 344322 22221 122345566542 456677777788999999875443222222 22346789999999977666
Q ss_pred ecCCCCCeEEEEEeCCC--Cee--EEEecCC------CC--------CceE-EEEEc--------CCCCEEEEEeCCCeE
Q 001163 570 GTNKEGESYLVEWNESE--GAV--KRTYHGL------GK--------RSVG-VVQFD--------TTKNRFLAAGDEFMI 622 (1134)
Q Consensus 570 ~~~~~~~~~i~~wd~~~--~~~--~~~~~~~------~~--------~~v~-~~~~~--------~~~~~l~~~~~dg~i 622 (1134)
.. ....|..++... +.. +..+.+. .. .... .++.. +++..+++=...+.|
T Consensus 288 d~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I 364 (430)
T 3tc9_A 288 VV---NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCI 364 (430)
T ss_dssp ET---TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEE
T ss_pred EC---CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEE
Confidence 43 244677766542 322 2222221 00 0122 45443 334444444467788
Q ss_pred EEEEcCCCceeEEEec---------CC------CCCCcceEEEcCC-CcEEEEEECCCcEEEEEc
Q 001163 623 KFWDMDNVNLLASIDA---------DG------GLQASPCIRFNKE-GILLAVSTNDNGIKILAN 671 (1134)
Q Consensus 623 ~iwd~~~~~~~~~~~~---------~~------~~~~v~~v~~sp~-~~~l~~~~~dg~i~iw~~ 671 (1134)
+.++. +|........ .+ .......++++|+ +.++++-...+.|+.+++
T Consensus 365 ~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 365 RILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 88883 4544333321 00 0123568888884 555555555677777664
No 293
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.80 E-value=0.0048 Score=69.80 Aligned_cols=240 Identities=10% Similarity=0.141 Sum_probs=134.4
Q ss_pred CCEEEEEEcCC--CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC---Ce-EEEE
Q 001163 419 ASVNRVMWSPD--GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED---RV-IKVW 492 (1134)
Q Consensus 419 ~~V~~l~~spd--~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d---~~-i~iw 492 (1134)
.....|+|+|+ +..|..+...+.|+.+|..++.... +.........++|+++|+ ++++.... .. +...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~----~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI----KTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE----ECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE----eecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEE
Confidence 35678999995 4455555444889999998776432 333445689999999999 45554421 22 3333
Q ss_pred ECCCCce-eEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCc-eeeecC-CCCCeeEEEECcCCCEEEEE
Q 001163 493 DAVTGTK-QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-RVDYDA-PGHSSTMMAYSADGARLFSC 569 (1134)
Q Consensus 493 d~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~ 569 (1134)
+...+.. ...+. .-.....+++++. ++.++++-..++.|+.+|..++.. ...... ....-..++|+|++++|+.+
T Consensus 213 ~~~~~~~~~~~~~-~~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 213 TRASGFTERLSLC-NARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp CGGGTTCCEEEEE-ECSSBCCCEECTT-TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred ECCCCeecccccc-ccCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence 3222111 01111 1122334555442 446666666778899998875544 122211 12223469999999977766
Q ss_pred ecCCCCCeEEEEEeCC--CCee--EEEecCC--------------CCCceEEEEE---------cCCCCEEEEEeCCCeE
Q 001163 570 GTNKEGESYLVEWNES--EGAV--KRTYHGL--------------GKRSVGVVQF---------DTTKNRFLAAGDEFMI 622 (1134)
Q Consensus 570 ~~~~~~~~~i~~wd~~--~~~~--~~~~~~~--------------~~~~v~~~~~---------~~~~~~l~~~~~dg~i 622 (1134)
.. ....|+.++.. ++.. ...+.+. .-.....+++ .++++.+++-...+.|
T Consensus 291 d~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I 367 (433)
T 4hw6_A 291 YN---GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV 367 (433)
T ss_dssp ET---TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred eC---CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence 43 24568887754 3321 1222221 0013456888 6666666665677889
Q ss_pred EEEEcCCCceeEEEecCCC----------------CCCcceEEEc-CCCcEEEEEECCCcEEEEEc
Q 001163 623 KFWDMDNVNLLASIDADGG----------------LQASPCIRFN-KEGILLAVSTNDNGIKILAN 671 (1134)
Q Consensus 623 ~iwd~~~~~~~~~~~~~~~----------------~~~v~~v~~s-p~~~~l~~~~~dg~i~iw~~ 671 (1134)
+.++. +|.. ..+.+.+. ......++++ ++|.++++-...+.|+.+++
T Consensus 368 ~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 368 RVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp EEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 99985 5543 33332211 1224578888 56666555555667776664
No 294
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.76 E-value=0.03 Score=60.19 Aligned_cols=210 Identities=10% Similarity=0.008 Sum_probs=127.4
Q ss_pred CCEEEEEEcCCCCEE-EEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC
Q 001163 419 ASVNRVMWSPDGTLF-GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 497 (1134)
Q Consensus 419 ~~V~~l~~spd~~~l-as~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~ 497 (1134)
..+..++|.+.+..| .+-...+.|..++..++..... .+...-.....+++.+.+.. ++++-...+.|.++++...
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~--~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~ 111 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGS 111 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE--EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE--EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCC
Confidence 357789999965555 4545678899999887632111 12222345678899876654 4566666789999997644
Q ss_pred ceeEEecCCCcCEEEEeccccCCccEEEEe-cCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCC
Q 001163 498 TKQYIFEGHESPVYSICPHHKENIQFIFST-ATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGE 576 (1134)
Q Consensus 498 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 576 (1134)
.....+.........+++.+.. +.++++- +..+.|...+++...........-..-..+++++++..|+.+-. ..
T Consensus 112 ~~~~l~~~~~~~P~giavdp~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~ 187 (318)
T 3sov_A 112 LRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KL 187 (318)
T ss_dssp SCEEEECSSCSSEEEEEEEGGG-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TT
T ss_pred cEEEEEeCCCCCccEEEEeCCC-CEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CC
Confidence 3333333444556788886543 2344443 23577888887643333333333345678999998888877642 34
Q ss_pred eEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Q 001163 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID 637 (1134)
Q Consensus 577 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 637 (1134)
..|..+|+..........+.. .....+++.. +..+++-...+.|..++..+|+....+.
T Consensus 188 ~~I~~~d~dG~~~~~~~~~~~-~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 188 NFIHKSNLDGTNRQAVVKGSL-PHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TEEEEEETTSCSCEEEECSCC-SCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEEcCCCCceEEEecCCC-CCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 579999986433322233222 2456677643 3344444467888888887777666654
No 295
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.75 E-value=0.028 Score=60.51 Aligned_cols=227 Identities=10% Similarity=0.040 Sum_probs=138.4
Q ss_pred CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCcee-EEecCCCcCEEEEeccc
Q 001163 439 KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ-YIFEGHESPVYSICPHH 517 (1134)
Q Consensus 439 dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~h~~~v~~~~~~~ 517 (1134)
...|+..|+.+...... ..+. .......++|.+.+.. ++++-...+.|..+++..+... ..+...-.....+++.+
T Consensus 12 ~~~I~~i~l~~~~~~~~-~~~~-~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~ 88 (318)
T 3sov_A 12 RRDLRLVDATNGKENAT-IVVG-GLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW 88 (318)
T ss_dssp EEEEEEEETTCTTSCCE-EEEE-EEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET
T ss_pred cCeEEEEECCCCceEEE-EEec-CCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc
Confidence 45689999987641111 1122 2234678999987664 4566667789999998766321 12221223345666654
Q ss_pred cCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCC
Q 001163 518 KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG 597 (1134)
Q Consensus 518 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 597 (1134)
. ++.++++-...+.|.+++++.................+++.|.+..|+..... ....|...++.... ...+....
T Consensus 89 ~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~--~~~~I~r~~~dG~~-~~~~~~~~ 164 (318)
T 3sov_A 89 L-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSS-RFIIINSE 164 (318)
T ss_dssp T-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS--SSCEEEEEETTSCS-CEEEECSS
T ss_pred C-CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC--CCCEEEEEEcCCCC-eEEEEECC
Confidence 3 33566777777899999987544444333344467889999977777665321 13568888876433 22222112
Q ss_pred CCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCc
Q 001163 598 KRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGI 675 (1134)
Q Consensus 598 ~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 675 (1134)
-.....+++++++..|+.+. ..+.|..+|++......... +.......+++. .+.++.+-...+.|..++..++.
T Consensus 165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~--~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK--GSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec--CCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCC
Confidence 22567899999887777766 67889999987544333332 123344567775 33455555567888888887663
No 296
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.74 E-value=0.027 Score=68.44 Aligned_cols=232 Identities=7% Similarity=0.011 Sum_probs=141.5
Q ss_pred EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC----ceeEEecCCC
Q 001163 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG----TKQYIFEGHE 507 (1134)
Q Consensus 432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~~h~ 507 (1134)
+|+.. ....|+..++....... +......+..|+|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~----l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred ccccc-cccceeEeeccCCccee----eecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 44444 33457777877654322 3334556789999986664 4556666788999997653 2233333233
Q ss_pred cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC
Q 001163 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (1134)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 587 (1134)
.....|++.+.. +.++++-...+.|.+.+++.......+.........|++.|.+.+|+..-.. ....|...++...
T Consensus 471 ~~P~GLAvD~~~-~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g--~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcceeeeeecC-CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC--CCCeEEEEecCCC
Confidence 445667775443 3567777778899999987554444444344567899999987777765422 1246888888654
Q ss_pred eeEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcE
Q 001163 588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI 666 (1134)
Q Consensus 588 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i 666 (1134)
.....+.. .-.....|++.+.+..|+.+. ..+.|...++........+...........|++.. +.++++-...+.|
T Consensus 548 ~~~~lv~~-~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I 625 (791)
T 3m0c_C 548 DIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAI 625 (791)
T ss_dssp CEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEE
T ss_pred ceEEEEeC-CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEE
Confidence 43333332 223678899998888887776 56789999987655555444322223334566532 2344444456777
Q ss_pred EEEEccCC
Q 001163 667 KILANADG 674 (1134)
Q Consensus 667 ~iw~~~~~ 674 (1134)
...+..++
T Consensus 626 ~~~dk~tG 633 (791)
T 3m0c_C 626 FSANRLTG 633 (791)
T ss_dssp EEEETTTC
T ss_pred EEEeCCCC
Confidence 77776666
No 297
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.71 E-value=0.0064 Score=68.73 Aligned_cols=252 Identities=8% Similarity=-0.017 Sum_probs=139.1
Q ss_pred cEEEEEEec-CCceeeeecc-CCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEE----
Q 001163 778 RVSRLIYTN-SGLAILALAS-NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFAL---- 851 (1134)
Q Consensus 778 ~i~~l~~sp-dg~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~---- 851 (1134)
....|+|.| +...|+++.. .+.|++.|+. .+.+....-.+.........++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~----------------------~~~v~~l~~~~~~~~~~p~~ia~~~~~ 197 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLK----------------------NRMLSSPLNINTIPTNRIRSIAFNKKI 197 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETT----------------------TTEEEEEECCTTSSCSBEEEEEECCCB
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECC----------------------CCEEEEEEccCccccCCCcEEEEeecc
Confidence 467889998 4555555554 3555555433 33222211111012345789999
Q ss_pred ---cCCCCeEEEee-CC-------eEEEEEccC-CeEE-----EEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEc
Q 001163 852 ---SKNDSYVMSAS-GG-------KISLFNMMT-FKTM-----TTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNV 914 (1134)
Q Consensus 852 ---s~dg~~la~~s-dg-------~i~lwd~~~-~~~~-----~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~ 914 (1134)
+++|..|+++. .+ .|.+++... +... ..+. .......++++|+++.++++-..++.|..+|+
T Consensus 198 ~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~ 276 (496)
T 3kya_A 198 EGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDL 276 (496)
T ss_dssp TTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred cccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence 99999777776 32 266665433 1211 1221 11244677889966667777778889999999
Q ss_pred c-------cceE--------------EEeccCccCceEEEEEeeCCCEEE-EEeCCCcEEEEECCCC--ccccceee-ee
Q 001163 915 R-------VDEV--------------KTKLKGHQKRITGLAFSNTLNVLV-SSGADSQLCVWSTDGW--EKQASKFL-TI 969 (1134)
Q Consensus 915 ~-------~~~~--------------~~~l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~i~iwd~~~~--~~~~~~~~-~~ 969 (1134)
. ++.. +.... .......|+|+|+|++|. +-.....|+.++.... .......+ ..
T Consensus 277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~-~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~ 355 (496)
T 3kya_A 277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIA-DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGG 355 (496)
T ss_dssp HHHHHHHHTTCCCCCBGGGCTTTEEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEB
T ss_pred ccccccccCceeecccccccccccceeEecC-CCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCC
Confidence 8 5543 11221 223457899999999544 4456678888665432 11000111 11
Q ss_pred --cCCCCC------CCCCce-EEEEc-------CCCCEEEE-EeeceEEEEeCCCcccceeeccC------------C--
Q 001163 970 --PNGRTA------SALADT-RVQFH-------LDQTHLLA-VHETQIAIYEAPKLECLKQFVPR------------E-- 1018 (1134)
Q Consensus 970 --~~~~~~------~~~~v~-~l~fs-------~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~------------~-- 1018 (1134)
..+... ...... .++.. ++|.+.++ ..++.|+.++ .+|. +.++... +
T Consensus 356 ~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~ 433 (496)
T 3kya_A 356 YKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTD 433 (496)
T ss_dssp TTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCC
T ss_pred CCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccC
Confidence 011100 001233 34444 45665555 4678899998 4453 3333211 1
Q ss_pred --------CccCEEEEEEccC-CCEEEEEecCCcEEEeecCCCcce
Q 001163 1019 --------ASGPITHATYSCD-SQSIYVAFEEGSVGVLTASTLRLR 1055 (1134)
Q Consensus 1019 --------h~~~v~~~~~s~d-g~~l~s~s~Dg~i~vwd~~~~~~~ 1055 (1134)
.-.....|+++++ |.+.++=..+..|+.++++.....
T Consensus 434 dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 434 DGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp CEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 1134778999997 666666566788999998765543
No 298
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.69 E-value=0.033 Score=67.68 Aligned_cols=213 Identities=9% Similarity=-0.046 Sum_probs=127.6
Q ss_pred CCCEEEEEEcCCCCEE-EEEeCCCEEEEEEccCCcee-eeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECC
Q 001163 418 TASVNRVMWSPDGTLF-GVAYSKHIVHLYTYHGGDEL-RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 495 (1134)
Q Consensus 418 ~~~V~~l~~spd~~~l-as~s~dg~v~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~ 495 (1134)
...+..|+|.+.+..| ++-...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++.
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTK 501 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCC
Confidence 4577899999955555 45556678998988753210 011123324455778999988865 56666778899999976
Q ss_pred CCceeEEecCCCcCEEEEeccccCCccEEEEecC-CCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCC
Q 001163 496 TGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKE 574 (1134)
Q Consensus 496 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 574 (1134)
.......+...-.....|++.+.. +.++++-.. .+.|...+++...........-.....|++++.+..|+.+-.
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~--- 577 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS--- 577 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---
T ss_pred CCeEEEEEeCCCCCcceEEEecCC-CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC---
Confidence 544333333344557888886643 344444433 367888888754444444433356789999988888877642
Q ss_pred CCeEEEEEeCCCCeeEEEecCCC-CCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEe
Q 001163 575 GESYLVEWNESEGAVKRTYHGLG-KRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASID 637 (1134)
Q Consensus 575 ~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~ 637 (1134)
+...|...++........+.... -.....|++. +.+|+.+. ..+.|...|..+|+.+..+.
T Consensus 578 ~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 578 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred CCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 24468889986544433333211 1133455553 33555554 66777777777776655553
No 299
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.68 E-value=0.00018 Score=87.12 Aligned_cols=206 Identities=9% Similarity=-0.032 Sum_probs=123.8
Q ss_pred CCeeEEEEcCCCCeEEEee--CCeEEEEEccC----CeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccc
Q 001163 844 DAVPCFALSKNDSYVMSAS--GGKISLFNMMT----FKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD 917 (1134)
Q Consensus 844 ~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~----~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~ 917 (1134)
..+..++|++++..|..+. .+.|+.+++.+ ......+.........|++.+.++.++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 4466889998888777775 57899999875 22222222222345678888635666666566789999998755
Q ss_pred eEEEeccCccCceEEEEEeeCCCEEEEEeC--CCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE
Q 001163 918 EVKTKLKGHQKRITGLAFSNTLNVLVSSGA--DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV 995 (1134)
Q Consensus 918 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~ 995 (1134)
.....+.........|++.|++.+|+.+.. .+.|..+++...... .+ +.... .....|+|+|++..|+++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~---~l-~~~~l----~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY---SL-VTENI----QWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC---EE-SCSSC----SSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee---EE-EeCCC----CCccEEEEeccCCEEEEE
Confidence 433333333344678899986655554432 267887777653211 11 11111 235779999987777664
Q ss_pred --eeceEEEEeCCCcccceeecc-CCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecC
Q 001163 996 --HETQIAIYEAPKLECLKQFVP-REASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRIN 1059 (1134)
Q Consensus 996 --~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~ 1059 (1134)
..+.|.++++.... ...+.. .........|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 558 D~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 45789999987432 233321 111223445566443 344455556899999988888776665
No 300
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.67 E-value=0.015 Score=61.79 Aligned_cols=195 Identities=11% Similarity=0.136 Sum_probs=120.3
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEecccc--CCcc---EEEEe-cC--CCcEEEEecCCCC-ceeeecC
Q 001163 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHK--ENIQ---FIFST-AT--DGKIKAWLYDNLG-SRVDYDA 549 (1134)
Q Consensus 479 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~---~l~s~-s~--dg~i~vwd~~~~~-~~~~~~~ 549 (1134)
++++....+-+.++|+ +|+.++.+.. +.++.+.+-+. -+|. ++++. -. +++|.+|+++... ....+..
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 5677777889999998 9999998864 45665554331 0111 23333 33 5789999875222 2222211
Q ss_pred ------CC-CCeeEEEE--CcC-CC-EEEEEecCCCCCeEEEEEeC-------CCCeeEEEecCCCCCceEEEEEcCCCC
Q 001163 550 ------PG-HSSTMMAY--SAD-GA-RLFSCGTNKEGESYLVEWNE-------SEGAVKRTYHGLGKRSVGVVQFDTTKN 611 (1134)
Q Consensus 550 ------~~-~~v~~~~~--s~~-~~-~l~~~~~~~~~~~~i~~wd~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~ 611 (1134)
.. ..+..+++ +|. ++ ++++... ++.+..|++ .+.+.++++.... .+..+...+...
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k----~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~EgcvvDd~~g 192 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK----EGEFEQYELKADKNGYISGKKVRAFKMNS--QTEGMAADDEYG 192 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECS----SSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEEEEEETTTT
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECC----CCeEEEEEEEeCCCCcccceEEEEecCCC--CcceEEEcCCCC
Confidence 11 45667777 774 44 3444332 345777776 2446777777654 577888999899
Q ss_pred EEEEEeCCCeEEEEEcC-----CCceeEEEecCCCCCCcceEEE--cCCCc-EEEEEE-CCCcEEEEEccCCceeEEEec
Q 001163 612 RFLAAGDEFMIKFWDMD-----NVNLLASIDADGGLQASPCIRF--NKEGI-LLAVST-NDNGIKILANADGIRLLRTVE 682 (1134)
Q Consensus 612 ~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~--sp~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 682 (1134)
.|+.+-++..|..++.+ +++.+..+........+..+++ .++++ +|++++ .+.++.+|+.....+.+..+.
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 99999998777777755 3445544432222235677777 45555 566555 577999999864335555553
No 301
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.62 E-value=0.025 Score=63.97 Aligned_cols=245 Identities=9% Similarity=0.107 Sum_probs=137.4
Q ss_pred CEEEEEEcC-CCCEEEEE-eCCCEEEEEEccCCceeeeeeeee-cCCCCEEEEEE-------ecCCCceEEEEEeCCC--
Q 001163 420 SVNRVMWSP-DGTLFGVA-YSKHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAF-------SYPNKQLSVVTCGEDR-- 487 (1134)
Q Consensus 420 ~V~~l~~sp-d~~~las~-s~dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~-------s~~~~~~~l~s~s~d~-- 487 (1134)
....|+|+| ++..|..+ ...+.|++.|.+++.... +.... ........++| ++++.. |+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~-l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~--lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS-PLNINTIPTNRIRSIAFNKKIEGYADEAEY--MIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE-EECCTTSSCSBEEEEEECCCBTTTBCTTCE--EEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE-EEccCccccCCCcEEEEeecccccCCCCCE--EEEEeCCCCC
Confidence 578999999 35544444 445678889988876432 21111 12235899999 999984 44444332
Q ss_pred -----eEEEEECCC-Ccee-----EEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecC-------CCCc------
Q 001163 488 -----VIKVWDAVT-GTKQ-----YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD-------NLGS------ 543 (1134)
Q Consensus 488 -----~i~iwd~~~-~~~~-----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~-------~~~~------ 543 (1134)
.|.+.+... |... ..+.... ....+++++. ++.++++-..++.|..+|+. ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 366666333 2221 1221111 2234555542 44667777788899999987 4432
Q ss_pred -----e-eeecC-CCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeC--CCCee--EEEecCC---C---C--------
Q 001163 544 -----R-VDYDA-PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE--SEGAV--KRTYHGL---G---K-------- 598 (1134)
Q Consensus 544 -----~-~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~--~~~~~--~~~~~~~---~---~-------- 598 (1134)
. ..+.. .......++|+|+|+.|+.+-. ....|+.++. .++.. ...+.+. . +
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 0 11112 2334578999999997666532 3456887554 44332 1222221 0 0
Q ss_pred CceE-EEEEc-------CCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCC----------------------CCCcceE
Q 001163 599 RSVG-VVQFD-------TTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG----------------------LQASPCI 648 (1134)
Q Consensus 599 ~~v~-~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------------~~~v~~v 648 (1134)
.... .++.. .++..+++=.....|+.++ .+|. +.++.+.+. ......|
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI 449 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence 0123 45554 4455555555778999998 4553 444433211 1224578
Q ss_pred EEcCC-CcEEEEEECCCcEEEEEccCC
Q 001163 649 RFNKE-GILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 649 ~~sp~-~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
+++++ |.++++=...+.||.+++...
T Consensus 450 avd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 450 VYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred EEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 88886 666666666778888877654
No 302
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.50 E-value=0.13 Score=53.48 Aligned_cols=232 Identities=13% Similarity=0.122 Sum_probs=153.0
Q ss_pred eEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc-ceEEEeccC
Q 001163 847 PCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-DEVKTKLKG 925 (1134)
Q Consensus 847 ~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~-~~~~~~l~~ 925 (1134)
.+.-.+|..+.+|.-...++.++|+++.+.+..+.- ...|.-=.|-. .+.|+..+ +..|+-|++.. ..+.+.+..
T Consensus 70 dsAIMnP~~~ViALrag~~LQiFnletK~klks~~~-~e~VvfWkWis--~~~L~lVT-~taVyHWs~~~~s~P~kvFdR 145 (365)
T 2xzh_A 70 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR 145 (365)
T ss_dssp SEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCEEEEEECS--SSEEEEEE-SSEEEEEESSTTCCCEEEEEC
T ss_pred ceeeeCCCccEEEEecCCeEEEechHHhhhhcceec-CCccEEEEecC--CCeEEEEc-CCcEEEEcccCCCCCceeeec
Confidence 356678999988888888999999999999888773 45777777764 45666655 45799999974 345555655
Q ss_pred cc----CceEEEEEeeCCCEEEEEeC-------CCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCC----
Q 001163 926 HQ----KRITGLAFSNTLNVLVSSGA-------DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQT---- 990 (1134)
Q Consensus 926 h~----~~V~~l~~s~d~~~l~s~s~-------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~---- 990 (1134)
|. ..|..-..+++.++++..|- .|.+.+|+.+.+ ..+..+||.. .-..+-.+|.
T Consensus 146 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~------~sQ~ieGhaa-----~F~~~~~~g~~~~~ 214 (365)
T 2xzh_A 146 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------VSQPIEGHAA-----SFAQFKMEGNAEES 214 (365)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT------EEEEECCSEE-----EEEEECCTTCSSCE
T ss_pred chhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc------ccceeeeeee-----eeEEEecCCCCCCc
Confidence 53 46777788889998886553 477899998873 4566666652 2223333332
Q ss_pred -EEEEEe----eceEEEEeCCCc---cc------cee-eccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcce
Q 001163 991 -HLLAVH----ETQIAIYEAPKL---EC------LKQ-FVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLR 1055 (1134)
Q Consensus 991 -~l~~~~----d~~i~iwd~~~~---~~------~~~-~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~ 1055 (1134)
.++.+. .+++.|-++... .. +.. +......+-..++..|+.-..++.-+.-|.|.+||++||..+
T Consensus 215 ~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i 294 (365)
T 2xzh_A 215 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 294 (365)
T ss_dssp EEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEE
Confidence 333332 268999998432 11 111 112223556678888888888888999999999999999998
Q ss_pred eecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163 1056 CRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus 1056 ~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
.+-..+. +.|+.. +.+. +..=++.....|.|.--.+.+
T Consensus 295 ~~nrIS~-------d~iF~t--a~~~-~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 295 YMNRISG-------ETIFVT--APHE-ATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp EEEECCS-------SCEEEE--EEEG-GGTEEEEEETTCEEEEEEECT
T ss_pred EEeccCC-------CceEEe--cccC-CCCcEEEEcCCCEEEEEEECc
Confidence 7655332 445443 2223 223444555777776655544
No 303
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.48 E-value=0.14 Score=53.36 Aligned_cols=261 Identities=8% Similarity=0.092 Sum_probs=153.0
Q ss_pred CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeee
Q 001163 379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLE 458 (1134)
Q Consensus 379 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~ 458 (1134)
..|.|-|+.++....++.+ .--+.-.+|..+.+|.=. ..++.|+|+++.+.++.
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi----------------------~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks--- 102 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPI----------------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA--- 102 (365)
T ss_dssp EEEEEEETTSTTSCEEEEC----------------------CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEE---
T ss_pred CEEEEEECCCCCCcccccc----------------------ccceeeeCCCccEEEEec-CCeEEEechHHhhhhcc---
Confidence 3688889888766543322 112344578888777765 67899999999876653
Q ss_pred eecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC-CceeEEecCCCc--CEEEEeccccCCccEEEEec-------
Q 001163 459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT-GTKQYIFEGHES--PVYSICPHHKENIQFIFSTA------- 528 (1134)
Q Consensus 459 l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s------- 528 (1134)
.. ....|..=.|-.+.. +.|+| +..|+-|++.. ..+++.|..|.. ...-+.+..+++.++++..+
T Consensus 103 ~~-~~e~VvfWkWis~~~-L~lVT---~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~ 177 (365)
T 2xzh_A 103 HT-MTDDVTFWKWISLNT-VALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR 177 (365)
T ss_dssp EE-CSSCEEEEEECSSSE-EEEEE---SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTE
T ss_pred ee-cCCccEEEEecCCCe-EEEEc---CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCc
Confidence 22 235677778875554 24444 35899999874 356666665532 22223333355556554433
Q ss_pred CCCcEEEEecCCCCceeeecCCCCCeeEEEEC--cC-CCEEEEEecCCCCCeEEEEEeCCCC---e------eEEEecCC
Q 001163 529 TDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYS--AD-GARLFSCGTNKEGESYLVEWNESEG---A------VKRTYHGL 596 (1134)
Q Consensus 529 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s--~~-~~~l~~~~~~~~~~~~i~~wd~~~~---~------~~~~~~~~ 596 (1134)
-.|.+.+|..+. +....+++|......+.+. +. ...++.+..... ...+++.++... . .+..+-..
T Consensus 178 v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~-g~kLhIiEi~~~~~~~~~f~kk~vdi~fpp 255 (365)
T 2xzh_A 178 VVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA-GGKLHIIEVGTPPTGNQPFPKKAVDVFFPP 255 (365)
T ss_dssp EEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT-EEEEEEEECSSCCTTCCCCCCEEEEECCCT
T ss_pred cceeEEEEeecc-cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCC-CcEEEEEEcCCCCCCCCCcccccceeeCCc
Confidence 236688887763 3333344443222222221 11 113333332211 246888887432 1 11111111
Q ss_pred --CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 597 --GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 597 --~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
.....-++..++....++..+.-|.|++||++++.++..-... ...|...+.+.+..-+++....|.|.-..++..
T Consensus 256 ea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS--~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 256 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp TCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred cccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccC--CCceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 1224556788888889999999999999999999999887654 345555555544445555667887776666554
No 304
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.44 E-value=0.0098 Score=62.69 Aligned_cols=201 Identities=12% Similarity=0.084 Sum_probs=125.0
Q ss_pred eeEEEEcCCCCeEEEee--CCeEEEEEccCCeEEEE-ecC----CC--CCeEEEEE---cCCCCcEEEEEe---------
Q 001163 846 VPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTT-FMP----PP--PAATFLAF---HPQDNNIIAIGM--------- 904 (1134)
Q Consensus 846 v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~-~~~----~~--~~v~~l~~---sp~~~~~la~g~--------- 904 (1134)
..+++|++....+..++ .++|..||...+..... +.+ .. ..+..|.| .| +++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTTS
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccccc
Confidence 34788987666666665 79999999976644433 222 11 13688999 68 688887644
Q ss_pred ----CCCcEEEEEcc---cceEEEecc--Ccc-----------CceEEEEEeeCCCEEEEEeCC-CcEEEEECCCCcccc
Q 001163 905 ----EDSSIQIYNVR---VDEVKTKLK--GHQ-----------KRITGLAFSNTLNVLVSSGAD-SQLCVWSTDGWEKQA 963 (1134)
Q Consensus 905 ----~dg~i~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~s~d~~~l~s~s~D-g~i~iwd~~~~~~~~ 963 (1134)
.+..|..||+. +++.+.... ... .....++..++|+..++++.- +.|...+.+.....
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~- 172 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS- 172 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE-
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe-
Confidence 26789999999 777654332 211 247899999999999998887 77777776653211
Q ss_pred ceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCcccceeeccC--C---CccCEEEE-EEccCCCE-E
Q 001163 964 SKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPR--E---ASGPITHA-TYSCDSQS-I 1035 (1134)
Q Consensus 964 ~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~--~---h~~~v~~~-~~s~dg~~-l 1035 (1134)
...............+.++++|||+.|++. ..+.+..+|+.+.... .+... + .-.....+ ..-.+|+. |
T Consensus 173 --~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~vll 249 (334)
T 2p9w_A 173 --TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNESVL 249 (334)
T ss_dssp --EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTEEEE
T ss_pred --eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCEEEE
Confidence 111111111111457799999999988884 5899999998843220 11110 1 11223443 33457887 5
Q ss_pred EEEecCCcEEEeecCC
Q 001163 1036 YVAFEEGSVGVLTAST 1051 (1134)
Q Consensus 1036 ~s~s~Dg~i~vwd~~~ 1051 (1134)
++.+..+.+.+.+-+.
T Consensus 250 V~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 250 VGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEETTEEEEEECSST
T ss_pred EEcCCCCEEEEECCCC
Confidence 5555566666666554
No 305
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.40 E-value=0.0015 Score=79.02 Aligned_cols=232 Identities=7% Similarity=0.007 Sum_probs=131.3
Q ss_pred CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC----CceeEEecCCCcCEEEEe
Q 001163 439 KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT----GTKQYIFEGHESPVYSIC 514 (1134)
Q Consensus 439 dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~----~~~~~~~~~h~~~v~~~~ 514 (1134)
.+.|+..++.+..... +......+..++|.+.+.. ++++-...+.|+.+++.. ......+.........|+
T Consensus 385 ~~~I~~id~~~~~~~~----~~~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 459 (699)
T ss_dssp TTC-CEECTTSCCEEC----CSCCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred ccceEEEeCCCCccee----eeccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence 3567888887755332 1122234678999987764 344545567899999875 222222221112234566
Q ss_pred ccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEec
Q 001163 515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594 (1134)
Q Consensus 515 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 594 (1134)
+.+.. +.++++-...+.|.+++++.......+.........+++.|.+.+|+..... ....|..+++.... ...+.
T Consensus 460 vD~~~-g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~--~~~~I~~~~~dG~~-~~~l~ 535 (699)
T 1n7d_A 460 VDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGVD-IYSLV 535 (699)
T ss_dssp CCCSS-SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS--SSCCEEBCCSSSCC-CCEES
T ss_pred EEeeC-CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC--CCCeEEEEeCCCCC-eeEEE
Confidence 65333 3556666667889999887544333333333456788999977666654321 12457777765332 22222
Q ss_pred CCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163 595 GLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (1134)
Q Consensus 595 ~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 673 (1134)
...-.....++++|++..|+.+. ..+.|.++++........+...........+++..+ .++++....+.|..++..+
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence 11122456799999876666655 677899999875443333322112223445666544 4555556678898888766
Q ss_pred CceeEEEe
Q 001163 674 GIRLLRTV 681 (1134)
Q Consensus 674 ~~~~~~~~ 681 (1134)
+ .....+
T Consensus 615 G-~~~~~i 621 (699)
T 1n7d_A 615 G-SDVNLL 621 (699)
T ss_dssp E-EEEECC
T ss_pred C-CceEEe
Confidence 6 344433
No 306
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.31 E-value=0.053 Score=59.30 Aligned_cols=228 Identities=10% Similarity=0.065 Sum_probs=123.4
Q ss_pred CCeeEEEEcCCCCeEEEeeCCeEEEEEccCCe-EEEEec---CCCCCeEEEEEcCC---CCcEEEEEeC---C----CcE
Q 001163 844 DAVPCFALSKNDSYVMSASGGKISLFNMMTFK-TMTTFM---PPPPAATFLAFHPQ---DNNIIAIGME---D----SSI 909 (1134)
Q Consensus 844 ~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~-~~~~~~---~~~~~v~~l~~sp~---~~~~la~g~~---d----g~i 909 (1134)
.....++|.|||+++++-.+|.|++++. +++ .+..+. ........|+++|+ ++.+.++-+. + ..|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 3467899999999777666899999974 454 222221 12356889999993 3544444332 3 567
Q ss_pred EEEEcccc-------eEE-Eecc---CccCceEEEEEeeCCCEEEEEeCC-------------CcEEEEECCCCccc---
Q 001163 910 QIYNVRVD-------EVK-TKLK---GHQKRITGLAFSNTLNVLVSSGAD-------------SQLCVWSTDGWEKQ--- 962 (1134)
Q Consensus 910 ~iwd~~~~-------~~~-~~l~---~h~~~V~~l~~s~d~~~l~s~s~D-------------g~i~iwd~~~~~~~--- 962 (1134)
..|+...+ +.+ ..+. .|. ...|+|.|||.+.++.+.. +.|.-++.+..-..
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 77776543 111 1122 232 3579999999887775432 34554554431000
Q ss_pred --cceeeeecCCCCCCCCCceEEEEcC-CCCEEEE--Eeec--eEEEEeCCCcc------------------cceeeccC
Q 001163 963 --ASKFLTIPNGRTASALADTRVQFHL-DQTHLLA--VHET--QIAIYEAPKLE------------------CLKQFVPR 1017 (1134)
Q Consensus 963 --~~~~~~~~~~~~~~~~~v~~l~fs~-dg~~l~~--~~d~--~i~iwd~~~~~------------------~~~~~~~~ 1017 (1134)
..... ..++. ....++|+| +|++.++ +.++ .|.+. ..+. .+..+.
T Consensus 186 f~~~~i~--a~G~r----np~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~-- 255 (354)
T 3a9g_A 186 FPNSPIW--SYGHR----NPQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDTG-- 255 (354)
T ss_dssp STTCCEE--EECCS----CCCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECT--
T ss_pred CCCCcEE--EEccC----CcceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeecC--
Confidence 00111 11221 256799999 6776555 2222 23332 2222 111110
Q ss_pred CCccCEEEEEEc-------cCCCEEEEEecCCcEEEeecCCC-cceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEE
Q 001163 1018 EASGPITHATYS-------CDSQSIYVAFEEGSVGVLTASTL-RLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFAL 1089 (1134)
Q Consensus 1018 ~h~~~v~~~~~s-------~dg~~l~s~s~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s 1089 (1134)
........++|. .+|.++++....+.|...++... +.... . .++. +-.. .+..+++.| |+.++++
T Consensus 256 ~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~-~--~~~~-~~~~--rp~~v~~~p-DG~lyv~ 328 (354)
T 3a9g_A 256 SETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKI-S--TFFK-NVFG--RLRDVVIDD-DGGILIS 328 (354)
T ss_dssp TCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEE-E--EECT-TTSC--CEEEEEECT-TSCEEEE
T ss_pred CCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccce-e--eecc-CCCC--CeeEEEECC-CCcEEEE
Confidence 113467888883 57877777766778888888753 22110 0 0111 1112 244557778 5766666
Q ss_pred Ee
Q 001163 1090 GL 1091 (1134)
Q Consensus 1090 ~~ 1091 (1134)
..
T Consensus 329 ~~ 330 (354)
T 3a9g_A 329 TS 330 (354)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 307
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.22 E-value=0.35 Score=52.44 Aligned_cols=261 Identities=8% Similarity=0.088 Sum_probs=155.1
Q ss_pred CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeee
Q 001163 379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLE 458 (1134)
Q Consensus 379 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~ 458 (1134)
..|.|-|+.++..+.++.+ .--+.-.+|..+.+|.=. ..++.|+|+++.+.++.
T Consensus 48 ~~vvIiDl~~~~~~~rrpi----------------------~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks--- 101 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPI----------------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA--- 101 (494)
T ss_dssp CEEEEEETTSTTSCEEEEC----------------------CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEE---
T ss_pred CeEEEEECCCCCcceeccc----------------------ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcc---
Confidence 3688889888766543322 122355677777777665 67899999999876653
Q ss_pred eecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC-CceeEEecCCCc--CEEEEeccccCCccEEEEec-------
Q 001163 459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT-GTKQYIFEGHES--PVYSICPHHKENIQFIFSTA------- 528 (1134)
Q Consensus 459 l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s------- 528 (1134)
..- ...|..=.|-.+.. +.|+| +..|+-|++.. ..+++.|..|.. ...-+.+..+++.++++..+
T Consensus 102 ~~~-~e~VvfWkWis~~~-l~lVT---~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~ 176 (494)
T 1bpo_A 102 HTM-TDDVTFWKWISLNT-VALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR 176 (494)
T ss_dssp EEC-SSCCCEEEEEETTE-EEEEC---SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTE
T ss_pred eec-CCCceEEEecCCCe-EEEEc---CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCc
Confidence 222 34577777876554 13333 46899999864 356666665532 22223333455556655332
Q ss_pred CCCcEEEEecCCCCceeeecCCCCCeeEEEECcCC---CEEEEEecCCCCCeEEEEEeCCCC--------eeEEE-e-cC
Q 001163 529 TDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG---ARLFSCGTNKEGESYLVEWNESEG--------AVKRT-Y-HG 595 (1134)
Q Consensus 529 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~~~~~~~~i~~wd~~~~--------~~~~~-~-~~ 595 (1134)
-.|.+.+|..+. +....+++|......+.+..+. ..++.+.... ....+++.++... +.... + ..
T Consensus 177 v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~-~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp 254 (494)
T 1bpo_A 177 VVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ-AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP 254 (494)
T ss_dssp EEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECST-TCCEEEEEECSCCCTTCCCCCCEEEECCCCT
T ss_pred ccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecC-CCcEEEEEEcCCCccCCCCccceeeeeeCCc
Confidence 236788888764 3333444444333333322111 1233333222 2356888887532 11111 1 11
Q ss_pred -CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163 596 -LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1134)
Q Consensus 596 -~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 674 (1134)
.......++..++....++..+.-|.|++||++++.++..-... ...|...+.+....-++.....|.|.-..++..
T Consensus 255 e~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs--~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 255 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred ccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc--CCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 11224556888888899999999999999999999999887654 445655555555555666668888777666554
No 308
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.21 E-value=0.076 Score=58.11 Aligned_cols=197 Identities=11% Similarity=0.084 Sum_probs=107.2
Q ss_pred CeeEEEEcCCCCeEEEeeCCeEEEEEccCCeE--EEEec---CCCCCeEEEEEcCC---CCcEEEEEeCC-----CcEEE
Q 001163 845 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MTTFM---PPPPAATFLAFHPQ---DNNIIAIGMED-----SSIQI 911 (1134)
Q Consensus 845 ~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~--~~~~~---~~~~~v~~l~~sp~---~~~~la~g~~d-----g~i~i 911 (1134)
....++|.|||+++++-.+|.|++++ +++. +..+. ........++|+|+ ++.+.++-... +.|..
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 45799999999977766589999998 3432 22222 12356899999993 24444444332 67888
Q ss_pred EEcccc-----eEE-Eecc---CccCceEEEEEeeCCCEEEEEeCC-------------CcEEEEECCCCccc-------
Q 001163 912 YNVRVD-----EVK-TKLK---GHQKRITGLAFSNTLNVLVSSGAD-------------SQLCVWSTDGWEKQ------- 962 (1134)
Q Consensus 912 wd~~~~-----~~~-~~l~---~h~~~V~~l~~s~d~~~l~s~s~D-------------g~i~iwd~~~~~~~------- 962 (1134)
|+...+ +.+ ..+. +.......++|.|||.+.++.+.. +.|.-++.+..-..
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~ 189 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGR 189 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTC
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCC
Confidence 887643 122 2233 111123589999999877775432 44555554431000
Q ss_pred ---cceeeeecCCCCCCCCCceEEEEcC-CCCEEEEE-eeceE------EEEeCCCcc------------------ccee
Q 001163 963 ---ASKFLTIPNGRTASALADTRVQFHL-DQTHLLAV-HETQI------AIYEAPKLE------------------CLKQ 1013 (1134)
Q Consensus 963 ---~~~~~~~~~~~~~~~~~v~~l~fs~-dg~~l~~~-~d~~i------~iwd~~~~~------------------~~~~ 1013 (1134)
...... .++. ....++|+| +|.+.++- ..+.+ .|.-+..+. .+..
T Consensus 190 ~~~~~~i~a--~G~r----np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 190 RGARPEVYS--LGHR----NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp TTSCTTEEE--ECCS----EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred CCCCccEEE--EcCC----CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence 000111 1111 246689999 66655552 22221 233333332 1111
Q ss_pred eccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCc
Q 001163 1014 FVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLR 1053 (1134)
Q Consensus 1014 ~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~ 1053 (1134)
+ .+......++| .+|.++++.-..+.|...+++...
T Consensus 264 ~---~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~ 299 (352)
T 2ism_A 264 W---PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGER 299 (352)
T ss_dssp C---TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEET
T ss_pred c---CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCC
Confidence 1 12345678888 577777766666778877776543
No 309
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.14 E-value=0.064 Score=58.71 Aligned_cols=229 Identities=11% Similarity=0.027 Sum_probs=115.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeee---ecCCCCEEEEEEecC---CCceEEEEEeCC-----Ce
Q 001163 420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEI---EAHVGSVNDLAFSYP---NKQLSVVTCGED-----RV 488 (1134)
Q Consensus 420 ~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l---~~h~~~V~~v~~s~~---~~~~~l~s~s~d-----~~ 488 (1134)
....++|.|||+++++ ..+|.|.+++ .++ ......+ .........|+|+|+ +.. ++++-... +.
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~-lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPY-VYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEECTTSSEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEECCCCCCCCE-EEEEEecCCCCCccE
Confidence 5679999999995555 5669999988 443 2211111 122456889999998 554 33333322 57
Q ss_pred EEEEECCCCc-----eeE-Eec---CCCcCEEEEeccccCCccEEEEecC-------------CCcEEEEecCCC-----
Q 001163 489 IKVWDAVTGT-----KQY-IFE---GHESPVYSICPHHKENIQFIFSTAT-------------DGKIKAWLYDNL----- 541 (1134)
Q Consensus 489 i~iwd~~~~~-----~~~-~~~---~h~~~v~~~~~~~~~~~~~l~s~s~-------------dg~i~vwd~~~~----- 541 (1134)
|..++...+. .+. .+. +.......++|. ++|.+.++.+. .|.|.-++.+..
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~--pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n 184 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFG--PDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN 184 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEEC--TTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEEC--CCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence 8888876442 121 233 111122456764 45566665432 145555554320
Q ss_pred -------CceeeecCCCCCeeEEEECc-CCCEEEEEecCCCC-----CeEEEEEeCCC----------------CeeEEE
Q 001163 542 -------GSRVDYDAPGHSSTMMAYSA-DGARLFSCGTNKEG-----ESYLVEWNESE----------------GAVKRT 592 (1134)
Q Consensus 542 -------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~-----~~~i~~wd~~~----------------~~~~~~ 592 (1134)
.....+.........++|+| +++..++-. ..+. ...|.+..... ..++..
T Consensus 185 pf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~-g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 185 PFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEH-GPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp TTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEE-CC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred cccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEc-CCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence 00001111112346788999 555544432 2111 01233322111 012222
Q ss_pred ecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce------eEEEecCCCCCCcceEEEcCCCcEEEEEE
Q 001163 593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL------LASIDADGGLQASPCIRFNKEGILLAVST 661 (1134)
Q Consensus 593 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~v~~sp~~~~l~~~~ 661 (1134)
+..+. ....++| .++..+++.-..+.|...++..... ...+-. ....+..+++.|||.++++..
T Consensus 264 ~~~~~--ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 264 WPQGF--PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CTTCC--CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCC--CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence 22111 3456677 4565555555667788777764331 112211 134678999999998776654
No 310
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.09 E-value=0.059 Score=58.99 Aligned_cols=239 Identities=11% Similarity=0.088 Sum_probs=124.8
Q ss_pred CeeEEEEcCCCC-eEEEeeCCeEEEEEccCCeEEEEec-------CCCCCeEEEEEcCC---CCcEEEEEeC-------C
Q 001163 845 AVPCFALSKNDS-YVMSASGGKISLFNMMTFKTMTTFM-------PPPPAATFLAFHPQ---DNNIIAIGME-------D 906 (1134)
Q Consensus 845 ~v~~v~~s~dg~-~la~~sdg~i~lwd~~~~~~~~~~~-------~~~~~v~~l~~sp~---~~~~la~g~~-------d 906 (1134)
....|+|.|||+ ++++-..|.|++++.. +.....+. ........++|+|+ ++.+.++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 457999999999 6666558999999853 33221111 12345789999993 3444444332 2
Q ss_pred CcEEEEEcccc-------eEE-Eecc-----CccCceEEEEEeeCCCEEEEEeCC-------------CcEEEEECCCCc
Q 001163 907 SSIQIYNVRVD-------EVK-TKLK-----GHQKRITGLAFSNTLNVLVSSGAD-------------SQLCVWSTDGWE 960 (1134)
Q Consensus 907 g~i~iwd~~~~-------~~~-~~l~-----~h~~~V~~l~~s~d~~~l~s~s~D-------------g~i~iwd~~~~~ 960 (1134)
..|..|++..+ +.+ ..+. .|. ...|+|.|||.+.++.+.. |.|.-++.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666665432 111 1222 132 3579999999777765442 356666655421
Q ss_pred cc----------cceeeeecCCCCCCCCCceEEEEcC-CCCEEEE--EeeceEEEEeCCCcccc----------------
Q 001163 961 KQ----------ASKFLTIPNGRTASALADTRVQFHL-DQTHLLA--VHETQIAIYEAPKLECL---------------- 1011 (1134)
Q Consensus 961 ~~----------~~~~~~~~~~~~~~~~~v~~l~fs~-dg~~l~~--~~d~~i~iwd~~~~~~~---------------- 1011 (1134)
.. ..... ..++. ....++|.| +|++.++ +.++.=.|.-+..+...
T Consensus 176 p~~npf~~~~~~~~~i~--a~G~r----np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIW--SYGIR----NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp CTTCTTTTSTTSCTTEE--EECCS----EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCcCCCCCCccEE--EEcCc----CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 00 00111 11221 267899999 5665555 22222233322222110
Q ss_pred --------eeecc----CCCccCEEEEEEcc-------CCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCc
Q 001163 1012 --------KQFVP----REASGPITHATYSC-------DSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRV 1072 (1134)
Q Consensus 1012 --------~~~~~----~~h~~~v~~~~~s~-------dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v 1072 (1134)
..+.. -.+...+..++|.. +|.++++.-..+.|...+++.++...... ++. +...
T Consensus 250 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~-~~~~-- 323 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT-DRGQ-- 323 (353)
T ss_dssp TTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG-GGCC--
T ss_pred CcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc-CCCC--
Confidence 00000 01234677888863 57777777677888888887664332211 110 1112
Q ss_pred eeEEEEecCCCCCEEEEEe-cCCcEEEEeC
Q 001163 1073 YPLVIAGNPTDPNQFALGL-TDGGVYIIEP 1101 (1134)
Q Consensus 1073 ~~~~~~~~p~~~~~l~s~~-~Dg~v~vW~~ 1101 (1134)
.+..+++.| |+.++++.. .+| +||.+
T Consensus 324 rp~~v~~~p-dG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 324 RIRDVRTGP-DGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp CEEEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred ceeEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence 345557888 677666443 344 45554
No 311
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.02 E-value=0.056 Score=57.74 Aligned_cols=195 Identities=9% Similarity=-0.028 Sum_probs=99.6
Q ss_pred CCCEEEEEeCC-----CEEEEEEccCCc---eeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC-----CeEEEEECC
Q 001163 429 DGTLFGVAYSK-----HIVHLYTYHGGD---ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RVIKVWDAV 495 (1134)
Q Consensus 429 d~~~las~s~d-----g~v~iwd~~~~~---~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d-----~~i~iwd~~ 495 (1134)
++++++.|+.+ ..+.+||..+++ -.. ...+......-.++.+ +++ +++.|+.+ ..+.++|..
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~d~~ 136 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYS-VAPMNVRRGLAGATTL--GDM--IYVSGGFDGSRRHTSMERYDPN 136 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEE-ECCCSSCCBSCEEEEE--TTE--EEEECCBCSSCBCCEEEEEETT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEE-CCCCCCCccceeEEEE--CCE--EEEEcccCCCcccceEEEEcCC
Confidence 67777777755 358899988765 221 1122211111222222 455 56666643 368899988
Q ss_pred CCceeE--EecCCCcCEEEEeccccCCccEEEEecCC-----CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEE
Q 001163 496 TGTKQY--IFEGHESPVYSICPHHKENIQFIFSTATD-----GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFS 568 (1134)
Q Consensus 496 ~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 568 (1134)
+.+-.. .+......-.++.+ ++.+++.|+.+ ..+.+||+.+..-...-..........+..-+++.++.
T Consensus 137 ~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~ 212 (301)
T 2vpj_A 137 IDQWSMLGDMQTAREGAGLVVA----SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVV 212 (301)
T ss_dssp TTEEEEEEECSSCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred CCeEEECCCCCCCcccceEEEE----CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEE
Confidence 775433 22211111122221 33677777654 45788887764333221111111111122235667777
Q ss_pred EecCCCC-CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCcee
Q 001163 569 CGTNKEG-ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLL 633 (1134)
Q Consensus 569 ~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~ 633 (1134)
++.+... ...+.+||+.+.+....-.......-..++. -++..++.|+.+ ..+.+||..+.+..
T Consensus 213 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 213 GGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV-LRGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp CCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred eCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE-ECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 7654332 3458999998876554322221111112222 256677777654 45788888776543
No 312
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.01 E-value=0.16 Score=54.20 Aligned_cols=236 Identities=10% Similarity=-0.035 Sum_probs=118.4
Q ss_pred CeEEEEEeCC--CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCC----CEE
Q 001163 369 QILLVVGTNM--GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK----HIV 442 (1134)
Q Consensus 369 ~~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~d----g~v 442 (1134)
.+|++.|+.+ ..+.+||..+++-.. ... .+.. ..+| .++. -++++++.|+.+ ..+
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~---------~~~-~p~~---r~~~----~~~~--~~~~lyv~GG~~~~~~~~~ 72 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTD---------IRC-PFEK---RRDA----ACVF--WDNVVYILGGSQLFPIKRM 72 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEE---------CCC-CSCC---CBSC----EEEE--ETTEEEEECCBSSSBCCEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEec---------CCC-CCcc---ccee----EEEE--ECCEEEEEeCCCCCCcceE
Confidence 4566777653 578889988765221 110 0100 1112 2222 267777788755 568
Q ss_pred EEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC------CeEEEEECCCCceeEE--ecCCCcCEEEEe
Q 001163 443 HLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED------RVIKVWDAVTGTKQYI--FEGHESPVYSIC 514 (1134)
Q Consensus 443 ~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d------~~i~iwd~~~~~~~~~--~~~h~~~v~~~~ 514 (1134)
.+||..+++-.. ...+......-..+. -+++ +++.|+.+ ..+.+||..+.+-... +......-.++.
T Consensus 73 ~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 147 (306)
T 3ii7_A 73 DCYNVVKDSWYS-KLGPPTPRDSLAACA--AEGK--IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE 147 (306)
T ss_dssp EEEETTTTEEEE-EECCSSCCBSCEEEE--ETTE--EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred EEEeCCCCeEEE-CCCCCccccceeEEE--ECCE--EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE
Confidence 899998875322 212221111122222 2555 56667655 4688999888754332 111111111222
Q ss_pred ccccCCccEEEEecC---------CCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCC-CeEEEEEeC
Q 001163 515 PHHKENIQFIFSTAT---------DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG-ESYLVEWNE 584 (1134)
Q Consensus 515 ~~~~~~~~~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~i~~wd~ 584 (1134)
+ ++.+++.|+. -..+.+||+.+..-...-..........+..-+++.++.++.+... ...+.+||+
T Consensus 148 ~----~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~ 223 (306)
T 3ii7_A 148 A----NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDI 223 (306)
T ss_dssp E----TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEET
T ss_pred E----CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeC
Confidence 1 3356666653 3457788887653322211111111111222266677776643321 234889999
Q ss_pred CCCeeEEEecCCCCC-ceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCceeE
Q 001163 585 SEGAVKRTYHGLGKR-SVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLLA 634 (1134)
Q Consensus 585 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~ 634 (1134)
.+.+....-...... ....+.+ ++..++.|+.+ ..+.+||..+.+...
T Consensus 224 ~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 224 KLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp TTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 887644332111111 1222222 56677777743 568889988876443
No 313
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.99 E-value=0.097 Score=55.16 Aligned_cols=161 Identities=13% Similarity=0.121 Sum_probs=104.7
Q ss_pred eEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCcccccccc--ccCCCCEEEEEE---cCCCCEEE
Q 001163 360 KSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLS--SDYTASVNRVMW---SPDGTLFG 434 (1134)
Q Consensus 360 ~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~---spd~~~la 434 (1134)
.+++|.+....++++.-..++|..||...+..... .+ . .+. ......+..|.| .|++++++
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~------------~-~~s~~g~~~~~~sGl~~~~~D~~grL~v 81 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VI------------D-GASSNGDGEQQMSGLSLLTHDNSKRLFA 81 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CC------------T-TTCCSSCCSEEEEEEEESSSSSCCEEEE
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ec------------C-CccccCCCcceeeEEEEeccCCCCcEEE
Confidence 48899987666766666899999999976543221 10 0 000 011124589999 68888887
Q ss_pred EEe-------------CCCEEEEEEcc---CCceeeeeeeeecCC-----------CCEEEEEEecCCCceEEEEEeCC-
Q 001163 435 VAY-------------SKHIVHLYTYH---GGDELRNHLEIEAHV-----------GSVNDLAFSYPNKQLSVVTCGED- 486 (1134)
Q Consensus 435 s~s-------------~dg~v~iwd~~---~~~~~~~~~~l~~h~-----------~~V~~v~~s~~~~~~~l~s~s~d- 486 (1134)
+.. .+..|..+|+. +++.+... .|.... .....++..++|+ ..++++.-
T Consensus 82 v~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~s~~~ 158 (334)
T 2p9w_A 82 VMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAFALGM 158 (334)
T ss_dssp EEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEEEESS
T ss_pred EEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEeCCCCC
Confidence 644 26789999999 77655422 232221 2488999999999 78888888
Q ss_pred CeEEEEECCCCceeEEec------CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCC
Q 001163 487 RVIKVWDAVTGTKQYIFE------GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540 (1134)
Q Consensus 487 ~~i~iwd~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 540 (1134)
+.|...+.. |+.+..+. ......+.|++++ +|.+|++....|.+..+|+..
T Consensus 159 ~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 159 PAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSS
T ss_pred CeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCC
Confidence 887777744 44333221 1122356788865 446677666699999999884
No 314
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.96 E-value=0.31 Score=52.40 Aligned_cols=201 Identities=10% Similarity=0.065 Sum_probs=110.7
Q ss_pred CCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeE--EEEec----CCCCCeEEEEEcCC---CCcEEEEEe--CCCcEEE
Q 001163 844 DAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT--MTTFM----PPPPAATFLAFHPQ---DNNIIAIGM--EDSSIQI 911 (1134)
Q Consensus 844 ~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~--~~~~~----~~~~~v~~l~~sp~---~~~~la~g~--~dg~i~i 911 (1134)
...+.++|.|||+++++-. .|.|++++..+++. +..+. ........|+|+|+ ++.+.++-+ .++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 4567999999999988887 79999998765543 22221 12356789999993 344444322 3455666
Q ss_pred EEcccc----------eEE-Eecc---CccCceEEEEEeeCCCEEEEEeC-------------CCcEEEEECCCCccccc
Q 001163 912 YNVRVD----------EVK-TKLK---GHQKRITGLAFSNTLNVLVSSGA-------------DSQLCVWSTDGWEKQAS 964 (1134)
Q Consensus 912 wd~~~~----------~~~-~~l~---~h~~~V~~l~~s~d~~~l~s~s~-------------Dg~i~iwd~~~~~~~~~ 964 (1134)
|.+..+ +.+ ..+. .|. ...|+|.|||.+.++.+. .|.|.-.+.+..-....
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 665441 111 1222 243 357999999988888653 24444444443100000
Q ss_pred e---eeeecCCCCCCCCCceEEEEcCCCCEEEE--EeeceEEEEeCCCccc------------------ceeeccCCCcc
Q 001163 965 K---FLTIPNGRTASALADTRVQFHLDQTHLLA--VHETQIAIYEAPKLEC------------------LKQFVPREASG 1021 (1134)
Q Consensus 965 ~---~~~~~~~~~~~~~~v~~l~fs~dg~~l~~--~~d~~i~iwd~~~~~~------------------~~~~~~~~h~~ 1021 (1134)
. ..-...++. ....++|+|+|.+.++ +.++.=.|.-+..+.. +..+. .+..
T Consensus 190 Pf~~~~i~a~G~R----Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~--~~~~ 263 (347)
T 3das_A 190 PFPGSPVYSYGHR----NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWS--TDEA 263 (347)
T ss_dssp SSTTCCEEEBCCS----BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEEC--TTTC
T ss_pred CCCCCeEEeeCCC----CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecC--CCCC
Confidence 0 000111222 2578999999887666 3333233333333321 11111 1124
Q ss_pred CEEEEEEccCCCEEEEEecCCcEEEeecCCCc
Q 001163 1022 PITHATYSCDSQSIYVAFEEGSVGVLTASTLR 1053 (1134)
Q Consensus 1022 ~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~ 1053 (1134)
....++|. +|.+++..-..+.|....+..+.
T Consensus 264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~ 294 (347)
T 3das_A 264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGTA 294 (347)
T ss_dssp CEEEEEEE-TTEEEEEESTTCSEEEEEEETTE
T ss_pred CCcceEEE-cCceeeccccCCEEEEEEecCCc
Confidence 66788886 56666665555666666665543
No 315
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.95 E-value=0.11 Score=55.60 Aligned_cols=232 Identities=6% Similarity=-0.023 Sum_probs=117.7
Q ss_pred CEEEEEeC--CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC----CeEEEEECCCCceeEE--
Q 001163 431 TLFGVAYS--KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED----RVIKVWDAVTGTKQYI-- 502 (1134)
Q Consensus 431 ~~las~s~--dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d----~~i~iwd~~~~~~~~~-- 502 (1134)
.+++.|+. ...+.+||..+++-.. ...+......-..+. -++. +++.|+.+ ..+.++|..+++-...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTD-IRCPFEKRRDAACVF--WDNV--VYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEE-CCCCSCCCBSCEEEE--ETTE--EEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEec-CCCCCcccceeEEEE--ECCE--EEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 34555654 3468899988765322 112221111122222 2455 66777654 6788999888754332
Q ss_pred ecCCCcCEEEEeccccCCccEEEEecCC------CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCC-
Q 001163 503 FEGHESPVYSICPHHKENIQFIFSTATD------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG- 575 (1134)
Q Consensus 503 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~- 575 (1134)
+......-..+.+ ++.+++.|+.+ ..+.+||..+..-...-..........+..-+++.++.++.+...
T Consensus 88 ~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 88 PPTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNV 163 (306)
T ss_dssp CSSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTT
T ss_pred CCccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCC
Confidence 2211111122222 33677777765 458888877654322211111111111122366677776654332
Q ss_pred ----CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCceeEEEecCCCCCCcc
Q 001163 576 ----ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLLASIDADGGLQASP 646 (1134)
Q Consensus 576 ----~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~ 646 (1134)
...+.+||+.+.+....-.......-.+++.. ++..++.|+.+ ..+.+||..+.+....-..........
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 242 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVK 242 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCE
T ss_pred cccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcccee
Confidence 34588999988765443222211111222222 55666666633 468899998876443322211111122
Q ss_pred eEEEcCCCcEEEEEECC-----CcEEEEEccCC
Q 001163 647 CIRFNKEGILLAVSTND-----NGIKILANADG 674 (1134)
Q Consensus 647 ~v~~sp~~~~l~~~~~d-----g~i~iw~~~~~ 674 (1134)
++.+ ++.+++.|+.+ ..+.+||..+.
T Consensus 243 ~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 243 CAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred EEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 2333 67788888754 46778887765
No 316
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.92 E-value=0.059 Score=57.59 Aligned_cols=234 Identities=12% Similarity=0.014 Sum_probs=117.7
Q ss_pred CCCEEEEEe-CC-----CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC-----CeEEEEECCCC
Q 001163 429 DGTLFGVAY-SK-----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RVIKVWDAVTG 497 (1134)
Q Consensus 429 d~~~las~s-~d-----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d-----~~i~iwd~~~~ 497 (1134)
++.+++.|+ .+ ..+.+||..+++-.. ...+.........+ ..++. +++.|+.+ ..+.++|..++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~--~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRKRRYVASV--SLHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSCCBSCEEE--EETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChhhccccEE--EECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 455666666 33 358889988765322 11122111111222 23454 66677654 46889998887
Q ss_pred c---eeE--EecCCCcCEEEEeccccCCccEEEEecCC-----CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEE
Q 001163 498 T---KQY--IFEGHESPVYSICPHHKENIQFIFSTATD-----GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF 567 (1134)
Q Consensus 498 ~---~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 567 (1134)
+ -.. .+......-.++.+ ++.+++.|+.+ ..+.+||+.+..-...-..........+..-+++.++
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 164 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYC 164 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEE
T ss_pred CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEE
Confidence 6 322 22211111122221 33677777654 3577888765443222212221111112223677777
Q ss_pred EEecCCCC-CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCceeEEEecCCC
Q 001163 568 SCGTNKEG-ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLLASIDADGG 641 (1134)
Q Consensus 568 ~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~ 641 (1134)
.++.++.. ...+.+||+.+.+....-.......-.+++. .++..++.|+.+ ..+.+||..+.+....-.....
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 243 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP 243 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc
Confidence 77654321 2458899998876554322211111112222 255666777653 4689999988765543222211
Q ss_pred CCCcceEEEcCCCcEEEEEECC-----CcEEEEEccCC
Q 001163 642 LQASPCIRFNKEGILLAVSTND-----NGIKILANADG 674 (1134)
Q Consensus 642 ~~~v~~v~~sp~~~~l~~~~~d-----g~i~iw~~~~~ 674 (1134)
.....+..-++++++.|+.+ ..+.+||..+.
T Consensus 244 --r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 244 --RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp --CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred --ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 11222222367777777765 35677777664
No 317
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.91 E-value=0.38 Score=52.48 Aligned_cols=231 Identities=8% Similarity=-0.055 Sum_probs=119.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeee---ecCCCCEEEEEEecC---CCceEEEEEeC---C---
Q 001163 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEI---EAHVGSVNDLAFSYP---NKQLSVVTCGE---D--- 486 (1134)
Q Consensus 419 ~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l---~~h~~~V~~v~~s~~---~~~~~l~s~s~---d--- 486 (1134)
.....|+|.|||+++++ ..+|.|+++| ..++ .....+ .........|+|+|+ +.. ++++-+. +
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSW-VYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEEECGGGCE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCc--eEeeccceeecCCCceeeEEeCCCCCcCCE-EEEEEeccCCCCCc
Confidence 35788999999985555 5669999887 3443 222111 122356889999998 553 3333332 3
Q ss_pred -CeEEEEECCCC-------cee-EEec---CCCcCEEEEeccccCCccEEEEecC-------------CCcEEEEecCCC
Q 001163 487 -RVIKVWDAVTG-------TKQ-YIFE---GHESPVYSICPHHKENIQFIFSTAT-------------DGKIKAWLYDNL 541 (1134)
Q Consensus 487 -~~i~iwd~~~~-------~~~-~~~~---~h~~~v~~~~~~~~~~~~~l~s~s~-------------dg~i~vwd~~~~ 541 (1134)
..|..|+...+ +.+ ..+. .|. ...++|. ++|.++++.+. .|.|.-++.+..
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~--pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~ 179 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFG--PDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR 179 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEEC--TTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEEC--CCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC
Confidence 56777776544 111 1122 132 2456664 45566665432 134544444321
Q ss_pred C-------ceeeecCCCCCeeEEEECc-CCCEEEEEecCCCCCeEEEEEeCCC--------C--------eeEEEecCCC
Q 001163 542 G-------SRVDYDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYLVEWNESE--------G--------AVKRTYHGLG 597 (1134)
Q Consensus 542 ~-------~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~--------~--------~~~~~~~~~~ 597 (1134)
- ....+.........++|+| +++..++-. ..+....|.+..... + .++..+....
T Consensus 180 ~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~-g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ 258 (354)
T 3a9g_A 180 PPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEH-GPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSET 258 (354)
T ss_dssp CCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEEC-CSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCC
T ss_pred CCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEec-CCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCC
Confidence 0 0011111112346799999 566555432 222112233332111 0 1222331111
Q ss_pred CCceEEEEEc-------CCCCEEEEEeCCCeEEEEEcCCC-cee--EEEecCCCCCCcceEEEcCCCcEEEEEE
Q 001163 598 KRSVGVVQFD-------TTKNRFLAAGDEFMIKFWDMDNV-NLL--ASIDADGGLQASPCIRFNKEGILLAVST 661 (1134)
Q Consensus 598 ~~~v~~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~~~~~~~~~v~~v~~sp~~~~l~~~~ 661 (1134)
.....++|. .++.++++.-..+.|...++... +.. ..+- .+....+..+++.|||.++++..
T Consensus 259 -~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 -WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-KNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp -CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-TTTSCCEEEEEECTTSCEEEEEC
T ss_pred -cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-cCCCCCeeEEEECCCCcEEEEEe
Confidence 246677773 46656655557778888888753 332 1221 12234678999999997766654
No 318
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.89 E-value=0.077 Score=56.68 Aligned_cols=234 Identities=12% Similarity=0.054 Sum_probs=115.4
Q ss_pred CCCEEEEEeCC----CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC-----CeEEEEECCCCce
Q 001163 429 DGTLFGVAYSK----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RVIKVWDAVTGTK 499 (1134)
Q Consensus 429 d~~~las~s~d----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d-----~~i~iwd~~~~~~ 499 (1134)
++.+++.|+.+ ..+..||..+.+-. ....+......-..+. -++. +++.|+.+ ..+.++|..+.+-
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W 89 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWH-QVAELPSRRCRAGMVY--MAGL--VFAVGGFNGSLRVRTVDSYDPVKDQW 89 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEE-EECCCSSCCBSCEEEE--ETTE--EEEESCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEe-EcccCCcccccceEEE--ECCE--EEEEeCcCCCccccceEEECCCCCce
Confidence 34455556543 35788898876522 1112221111111222 2455 56677654 3688899887754
Q ss_pred eEE--ecCCCcCEEEEeccccCCccEEEEecCCC-----cEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecC
Q 001163 500 QYI--FEGHESPVYSICPHHKENIQFIFSTATDG-----KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572 (1134)
Q Consensus 500 ~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 572 (1134)
... +......-..+.+ ++.+++.|+.++ .+.+||+.+..-...-..........+..-+++.++.++.+
T Consensus 90 ~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 165 (302)
T 2xn4_A 90 TSVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYD 165 (302)
T ss_dssp EEECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEE
T ss_pred eeCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCC
Confidence 332 2111111122222 236677776553 46677776543222211111111111122366677776654
Q ss_pred CCC---CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCceeEEEecCCCCCC
Q 001163 573 KEG---ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLLASIDADGGLQA 644 (1134)
Q Consensus 573 ~~~---~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~ 644 (1134)
... ...+.+||+.+.+....-.......-.+++. -++..++.|+.+ ..+.+||..+.+....-..... .
T Consensus 166 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~--r 242 (302)
T 2xn4_A 166 VASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC--R 242 (302)
T ss_dssp TTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--C
T ss_pred CCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--c
Confidence 332 2458899998876544322111111122222 256677777653 4689999988765443222111 1
Q ss_pred cceEEEcCCCcEEEEEECCC-----cEEEEEccCC
Q 001163 645 SPCIRFNKEGILLAVSTNDN-----GIKILANADG 674 (1134)
Q Consensus 645 v~~v~~sp~~~~l~~~~~dg-----~i~iw~~~~~ 674 (1134)
....+..-++.+++.|+.++ .+.+||+.+.
T Consensus 243 ~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 243 RNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred ccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 11222223677777777653 4788887765
No 319
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.88 E-value=0.026 Score=61.17 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=103.9
Q ss_pred EEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCC----CCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce-----
Q 001163 848 CFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPP----PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE----- 918 (1134)
Q Consensus 848 ~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~----~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~----- 918 (1134)
....+.+|..++.+.++.||.-++......+.+... ...|..+..+| +|.+||..+ +..|.|-.+..+.
T Consensus 25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVED 102 (452)
T ss_dssp EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcc
Confidence 445668899999999999999998755555555543 34688999999 899999886 5579998887321
Q ss_pred -------EEEeccC------ccCceEEEEEeeC---CCEEEEEeCCCcEEEEECCCCccccceeeeecC---CCCCCCCC
Q 001163 919 -------VKTKLKG------HQKRITGLAFSNT---LNVLVSSGADSQLCVWSTDGWEKQASKFLTIPN---GRTASALA 979 (1134)
Q Consensus 919 -------~~~~l~~------h~~~V~~l~~s~d---~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~ 979 (1134)
..+.+.- ...+|..+.|+|- +..|++-..|++|++||+........ .+.... +.......
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~e 181 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVND 181 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCC
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccce
Confidence 0112221 2577999999985 56899999999999999987432222 221111 11111146
Q ss_pred ceEEEEcCCCCEEEE-E--eeceEEE
Q 001163 980 DTRVQFHLDQTHLLA-V--HETQIAI 1002 (1134)
Q Consensus 980 v~~l~fs~dg~~l~~-~--~d~~i~i 1002 (1134)
+.+++|+.++--|.+ . .+|.|+-
T Consensus 182 v~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 182 ITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp EEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred EEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 889999998876666 3 4466653
No 320
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.85 E-value=0.063 Score=58.03 Aligned_cols=203 Identities=10% Similarity=0.087 Sum_probs=117.6
Q ss_pred CeeEEEEcCCCCeEEEe-------------eCCeEEEEEccC--CeEE-EEecC-----CCCCeEEEEEcCC-CCc--EE
Q 001163 845 AVPCFALSKNDSYVMSA-------------SGGKISLFNMMT--FKTM-TTFMP-----PPPAATFLAFHPQ-DNN--II 900 (1134)
Q Consensus 845 ~v~~v~~s~dg~~la~~-------------sdg~i~lwd~~~--~~~~-~~~~~-----~~~~v~~l~~sp~-~~~--~l 900 (1134)
....+++.++|..++++ .+|.|.++|..+ .+.. ..+.+ .......+.+.++ ++. ++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34577788888777665 378899999873 2221 12222 1235677777552 232 44
Q ss_pred EEEeC--CCcEEEEEcccc----eEEEeccCc-cCceEEEEEeeCCCEEEEEeC---C------------CcEEEEECCC
Q 001163 901 AIGME--DSSIQIYNVRVD----EVKTKLKGH-QKRITGLAFSNTLNVLVSSGA---D------------SQLCVWSTDG 958 (1134)
Q Consensus 901 a~g~~--dg~i~iwd~~~~----~~~~~l~~h-~~~V~~l~~s~d~~~l~s~s~---D------------g~i~iwd~~~ 958 (1134)
++-.. +.+|.+|++..+ ..+..+.+. -...+++++.++|.+.++... | ..=.+|-++.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44333 467888887653 223444432 245789999999998887641 1 2233444433
Q ss_pred CccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE--eeceEEEEeCCC-ccc--ceeeccCCCccCEEEEEEcc-CC
Q 001163 959 WEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV--HETQIAIYEAPK-LEC--LKQFVPREASGPITHATYSC-DS 1032 (1134)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~i~iwd~~~-~~~--~~~~~~~~h~~~v~~~~~s~-dg 1032 (1134)
++ ...+ ..+. .....++||||++.|.++ ..+.|..|++.. ++. ...+. ..+....+++.+ +|
T Consensus 211 ~~---~~~~--~~~l----~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G 278 (355)
T 3sre_A 211 ND---VRVV--AEGF----DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTG 278 (355)
T ss_dssp TC---CEEE--EEEE----SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTC
T ss_pred Ce---EEEe--ecCC----cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCC
Confidence 32 1111 1111 235789999999988885 467899999863 322 12222 145678899999 59
Q ss_pred CEEEEEecC-CcEEEeecC--CCcceeecC
Q 001163 1033 QSIYVAFEE-GSVGVLTAS--TLRLRCRIN 1059 (1134)
Q Consensus 1033 ~~l~s~s~D-g~i~vwd~~--~~~~~~~~~ 1059 (1134)
.+.+++..+ +.|..|+-. .+..+.++.
T Consensus 279 ~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 279 DLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp CEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred cEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 988766644 344444433 244444443
No 321
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.83 E-value=0.77 Score=49.84 Aligned_cols=261 Identities=9% Similarity=0.087 Sum_probs=154.6
Q ss_pred CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCc
Q 001163 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI 655 (1134)
Q Consensus 576 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 655 (1134)
...|.+.|+..+..+.+-.-. ..+.-++|..+.++.-. ..++.|+|+++.+.+...... ..|.--.|-.+.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~---e~VvfWkWis~~- 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWISLN- 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS---SCCCEEEEEETT-
T ss_pred CCeEEEEECCCCCcceecccc----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC---CCceEEEecCCC-
Confidence 346889999886554332222 22455788887777665 689999999999999888754 245555555433
Q ss_pred EEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCcc
Q 001163 656 LLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRN 735 (1134)
Q Consensus 656 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 735 (1134)
.|+..+ +..|+-|++.......+.+..|..-
T Consensus 118 ~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L------------------------------------------------ 148 (494)
T 1bpo_A 118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 148 (494)
T ss_dssp EEEEEC-SSEEEEEESSSSCCCEEEEECCGGG------------------------------------------------
T ss_pred eEEEEc-CCeeEEecccCCCCchhheecchhc------------------------------------------------
Confidence 444443 4589999986543444444332110
Q ss_pred CcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeecc-------CCeEEeeecCCC
Q 001163 736 FTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS-------NAVHKLWKWPRN 808 (1134)
Q Consensus 736 ~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~-------dg~i~vw~~~~~ 808 (1134)
....|.....+++.++++..+- .|.+.+|..+.
T Consensus 149 ---------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er- 188 (494)
T 1bpo_A 149 ---------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR- 188 (494)
T ss_dssp ---------------------------------------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-
T ss_pred ---------------------------------------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-
Confidence 1234555566666666654432 25566665443
Q ss_pred CCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC---CCeEEEee----CCeEEEEEccCC-------
Q 001163 809 ERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN---DSYVMSAS----GGKISLFNMMTF------- 874 (1134)
Q Consensus 809 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d---g~~la~~s----dg~i~lwd~~~~------- 874 (1134)
+.... +.| |...-..+.+..+ .++++.+. .+++.|.++...
T Consensus 189 ---------------------~~sQ~--ieG--haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f 243 (494)
T 1bpo_A 189 ---------------------KVSQP--IEG--HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 243 (494)
T ss_dssp ---------------------CCEEE--ECC--SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC
T ss_pred ---------------------cccch--hee--eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc
Confidence 22111 222 3222222222111 12333333 268999988532
Q ss_pred -eEEEE-ecC---CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCC
Q 001163 875 -KTMTT-FMP---PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS 949 (1134)
Q Consensus 875 -~~~~~-~~~---~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg 949 (1134)
+.... +-. ...--.++..++ .-.++..-+.-|.|++||+.++.++..-+--.+.|..-+-..+..-++.....|
T Consensus 244 ~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~G 322 (494)
T 1bpo_A 244 PKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKG 322 (494)
T ss_dssp CCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTC
T ss_pred cceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCc
Confidence 11111 111 123467888888 667888999999999999999999877666666776666665555666666778
Q ss_pred cEEEEECCCCc
Q 001163 950 QLCVWSTDGWE 960 (1134)
Q Consensus 950 ~i~iwd~~~~~ 960 (1134)
.|.--.++...
T Consensus 323 qVl~v~v~e~~ 333 (494)
T 1bpo_A 323 QVLSVCVEEEN 333 (494)
T ss_dssp EEEEEEECTTT
T ss_pred eEEEEEEcccc
Confidence 77766666533
No 322
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=96.79 E-value=0.00093 Score=53.93 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=33.3
Q ss_pred CCcchHHHHHHHHHHhhhcCHHHHHHHHHHhcCCCc
Q 001163 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFF 36 (1134)
Q Consensus 1 ~~~~~~e~~~li~q~L~~~g~~~s~~~l~~Esg~~~ 36 (1134)
|+....||..||..||.|.||..||-+|++||+|.-
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence 788999999999999999999999999999999864
No 323
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.66 E-value=0.13 Score=54.93 Aligned_cols=194 Identities=9% Similarity=-0.002 Sum_probs=96.5
Q ss_pred CCCEEEEEeCCC-----EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCC-----eEEEEECCCCc
Q 001163 429 DGTLFGVAYSKH-----IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR-----VIKVWDAVTGT 498 (1134)
Q Consensus 429 d~~~las~s~dg-----~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~-----~i~iwd~~~~~ 498 (1134)
++++++.|+.++ .+.+||..+.+-.. ...+......-..+.+ +++ +++.|+.++ .+.+||+.+.+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS-VANMRDRRSTLGAAVL--NGL--LYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEE--TTE--EEEEEEECSSCEEEEEEEEETTTTE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceee-CCCCCccccceEEEEE--CCE--EEEEcCCCCCccCceEEEEeCCCCe
Confidence 677777777543 58889988765322 1122211111222222 454 566666543 57788988775
Q ss_pred eeEE--ecCCCcCEEEEeccccCCccEEEEecCC-------CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEE
Q 001163 499 KQYI--FEGHESPVYSICPHHKENIQFIFSTATD-------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC 569 (1134)
Q Consensus 499 ~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d-------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 569 (1134)
-... +........++.+ ++.+++.|+.+ ..+.+||+.+..-...-..........+..-+++.++.+
T Consensus 136 W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G 211 (302)
T 2xn4_A 136 WFHVAPMNTRRSSVGVGVV----GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVG 211 (302)
T ss_dssp EEEECCCSSCCBSCEEEEE----TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred EeecCCCCCcccCceEEEE----CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEEC
Confidence 4332 2111111122221 33666666543 347788876543322211111111111122366777777
Q ss_pred ecCCCC-CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCCce
Q 001163 570 GTNKEG-ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF-----MIKFWDMDNVNL 632 (1134)
Q Consensus 570 ~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~ 632 (1134)
+.++.. ...+.+||+.+.+....-.......-..++. .++..++.|+.++ .+.+||..+.+.
T Consensus 212 G~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 212 GHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp CBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 654322 2358999998876544322211111112222 3566777776543 478888877654
No 324
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.61 E-value=0.74 Score=50.10 Aligned_cols=232 Identities=9% Similarity=0.007 Sum_probs=116.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeee----ecCCCCEEEEEEecC---CCceEEEEEeC-------
Q 001163 420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEI----EAHVGSVNDLAFSYP---NKQLSVVTCGE------- 485 (1134)
Q Consensus 420 ~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l----~~h~~~V~~v~~s~~---~~~~~l~s~s~------- 485 (1134)
....|+|.|||+.|.++...|.|++++.. +........+ .........++|+|+ +.. +.++-+.
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRR-IWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCE-EEEEEEEECSSSCE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCE-EEEEEeCCCCCCCc
Confidence 56899999999944455578999999853 3321111111 122345789999996 553 3333322
Q ss_pred CCeEEEEECCCC--c-----eeE-Eec-----CCCcCEEEEeccccCCccEEEEecC-------------CCcEEEEecC
Q 001163 486 DRVIKVWDAVTG--T-----KQY-IFE-----GHESPVYSICPHHKENIQFIFSTAT-------------DGKIKAWLYD 539 (1134)
Q Consensus 486 d~~i~iwd~~~~--~-----~~~-~~~-----~h~~~v~~~~~~~~~~~~~l~s~s~-------------dg~i~vwd~~ 539 (1134)
...|..++...+ . .+. .+. .|. -..++|. ++|.+.++.+. .|.|.-++.+
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~--pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d 172 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFD--GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ 172 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEEC--SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEEC--CCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence 235666665433 1 111 111 122 2456774 45555555433 2456556554
Q ss_pred CCC------------ceeeecCCCCCeeEEEECc-CCCEEEEEecCCCCCeEEEEEeC--------CCC-----------
Q 001163 540 NLG------------SRVDYDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYLVEWNE--------SEG----------- 587 (1134)
Q Consensus 540 ~~~------------~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~--------~~~----------- 587 (1134)
..- ....+.........++|.| +|++.++ -...++...|.+... ..+
T Consensus 173 G~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~-d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~ 251 (353)
T 2g8s_A 173 GEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN-EHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE 251 (353)
T ss_dssp SCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE-EECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred CCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE-ecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence 220 0111111112467899999 5554443 322211122322110 000
Q ss_pred ----------eeEEEecCCCCCceEEEEEcC-------CCCEEEEEeCCCeEEEEEcCCCceeEEEecC-CCCCCcceEE
Q 001163 588 ----------AVKRTYHGLGKRSVGVVQFDT-------TKNRFLAAGDEFMIKFWDMDNVNLLASIDAD-GGLQASPCIR 649 (1134)
Q Consensus 588 ----------~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~ 649 (1134)
.++..+..+. ....+.|.. ++.++++.-..+.|...++..++.+.....- .....+..++
T Consensus 252 ~~~~~~~~~~~P~~~~~~~~--ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~ 329 (353)
T 2g8s_A 252 AKGEIVAGTEQPVFYWKDSP--AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVR 329 (353)
T ss_dssp CCBSSCTTSCCCSEEESSCC--CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEE
T ss_pred ccCCCCCCccCCeEEeCCCc--CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEE
Confidence 0111222111 355567753 4556655557788888888766544332211 1123678999
Q ss_pred EcCCCcEEEEE
Q 001163 650 FNKEGILLAVS 660 (1134)
Q Consensus 650 ~sp~~~~l~~~ 660 (1134)
+.|||.++++.
T Consensus 330 ~~pdG~lyv~t 340 (353)
T 2g8s_A 330 TGPDGYLYVLT 340 (353)
T ss_dssp ECTTSCEEEEE
T ss_pred ECCCCcEEEEE
Confidence 99999866643
No 325
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.56 E-value=0.083 Score=57.32 Aligned_cols=149 Identities=16% Similarity=0.161 Sum_probs=92.6
Q ss_pred CCcEEEEEeCCCcEEEEEcccceEEEeccCc----cCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccc---------
Q 001163 896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGH----QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQ--------- 962 (1134)
Q Consensus 896 ~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h----~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~--------- 962 (1134)
++.-++++- ++.||.-++..+...+.+... -+.|..+..||+|++||..+. .+|.|-.+..+...
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccc
Confidence 444444443 467777777643333333321 235788999999999999875 46999888733211
Q ss_pred -cceeeeecCCCCCCCCCceEEEEcCCC---CEEEE-EeeceEEEEeCCCcccc--------eeeccCCCccCEEEEEEc
Q 001163 963 -ASKFLTIPNGRTASALADTRVQFHLDQ---THLLA-VHETQIAIYEAPKLECL--------KQFVPREASGPITHATYS 1029 (1134)
Q Consensus 963 -~~~~~~~~~~~~~~~~~v~~l~fs~dg---~~l~~-~~d~~i~iwd~~~~~~~--------~~~~~~~h~~~v~~~~~s 1029 (1134)
..+...+..........|..+.|+|-+ ..|++ ..|+.|++||+...... ..+....+...|.+++|.
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence 111222221111112679999999953 45666 79999999999863211 112222334789999999
Q ss_pred cCCCEEEEEe--cCCcEEE
Q 001163 1030 CDSQSIYVAF--EEGSVGV 1046 (1134)
Q Consensus 1030 ~dg~~l~s~s--~Dg~i~v 1046 (1134)
.+|-.|...+ ..|-|+-
T Consensus 189 ~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp TTSSCEEEEECTTSCEEEE
T ss_pred CCCcEEEEEecCCCCCEEE
Confidence 9988888755 7787753
No 326
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.54 E-value=1.1 Score=47.98 Aligned_cols=99 Identities=10% Similarity=0.103 Sum_probs=58.8
Q ss_pred eeEEEEcCCCCeEEEee--CCeEEEEEccCCe------------------EEEEecCCCCCeEEEEEcCCCCcEEEEEeC
Q 001163 846 VPCFALSKNDSYVMSAS--GGKISLFNMMTFK------------------TMTTFMPPPPAATFLAFHPQDNNIIAIGME 905 (1134)
Q Consensus 846 v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~------------------~~~~~~~~~~~v~~l~~sp~~~~~la~g~~ 905 (1134)
...++|+|+|.+.++-. ++.=.|--+..+. ++..+..+......++|.. +.+++..-.
T Consensus 204 p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l~ 281 (347)
T 3das_A 204 VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGLR 281 (347)
T ss_dssp CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEEST
T ss_pred cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--Cceeecccc
Confidence 45899999988766553 3222222221111 1222322224567788874 566666666
Q ss_pred CCcEEEEEcccceE----EEeccCccCceEEEEEeeCCCEEEEEe
Q 001163 906 DSSIQIYNVRVDEV----KTKLKGHQKRITGLAFSNTLNVLVSSG 946 (1134)
Q Consensus 906 dg~i~iwd~~~~~~----~~~l~~h~~~V~~l~~s~d~~~l~s~s 946 (1134)
.+.|....+..+.. ...+.+...++.+|+..|||.++++.+
T Consensus 282 ~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 282 GERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 66777677765432 233445557899999999998777654
No 327
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.52 E-value=0.22 Score=53.49 Aligned_cols=230 Identities=9% Similarity=-0.043 Sum_probs=112.6
Q ss_pred EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC-----C------CeEEEEECCCCcee
Q 001163 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-----D------RVIKVWDAVTGTKQ 500 (1134)
Q Consensus 432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-----d------~~i~iwd~~~~~~~ 500 (1134)
+++.|+ ..+.+||..+++-.. ..+..........+...+++ +++.|+. . ..+.+||..+++-.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~ 80 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL 80 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE
T ss_pred EEEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEE
Confidence 344455 568999998876322 22332222223333344565 5666663 1 12778898877543
Q ss_pred EE--ecCCCcCEEEEeccccCCccEEEEecCC--------CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEe
Q 001163 501 YI--FEGHESPVYSICPHHKENIQFIFSTATD--------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCG 570 (1134)
Q Consensus 501 ~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d--------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 570 (1134)
.. +......-..+.+ ++.+++.|+.+ ..+.+||..+..-...-..+.......+..-+++.++.++
T Consensus 81 ~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 156 (315)
T 4asc_A 81 GMPPLPSPRCLFGLGEA----LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGG 156 (315)
T ss_dssp ECCCBSSCEESCEEEEE----TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred ECCCCCcchhceeEEEE----CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeC
Confidence 21 1111111111111 33666777632 3578888775432221111122111222234666777776
Q ss_pred cCC--CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCCceeEEEecCCCCC
Q 001163 571 TNK--EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF-----MIKFWDMDNVNLLASIDADGGLQ 643 (1134)
Q Consensus 571 ~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~ 643 (1134)
.+. .....+.+||+.+.+....-.......-.+++. -++..++.|+.++ .+.+||..+.+....-.....
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-- 233 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE-- 233 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC--
T ss_pred CCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc--
Confidence 521 112458899998876543222111111122222 2566777777543 588899988765444322211
Q ss_pred CcceEEEcCCCcEEEEEECCC--------------cEEEEEccCC
Q 001163 644 ASPCIRFNKEGILLAVSTNDN--------------GIKILANADG 674 (1134)
Q Consensus 644 ~v~~v~~sp~~~~l~~~~~dg--------------~i~iw~~~~~ 674 (1134)
.....+..-++.+++.|+.++ .+.+||+.+.
T Consensus 234 r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 234 RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 111122223567777777532 3566776654
No 328
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.48 E-value=1.3 Score=47.82 Aligned_cols=207 Identities=12% Similarity=0.076 Sum_probs=114.0
Q ss_pred CEEEEEEcCCCCEEEEEe------------CCCEEEEEEccCCc-eeeeeeeeec-----CCCCEEEEEEec--CCCceE
Q 001163 420 SVNRVMWSPDGTLFGVAY------------SKHIVHLYTYHGGD-ELRNHLEIEA-----HVGSVNDLAFSY--PNKQLS 479 (1134)
Q Consensus 420 ~V~~l~~spd~~~las~s------------~dg~v~iwd~~~~~-~~~~~~~l~~-----h~~~V~~v~~s~--~~~~~~ 479 (1134)
..-.++..|+|..+++++ .+|.|.++|.++.. ..... .+.+ .......+.+.+ ++...+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 344566788876655552 68999999997431 12222 2333 234667777766 454323
Q ss_pred EEEEeC--CCeEEEEECCCCc----eeEEecCC-CcCEEEEeccccCCccEEEEecC-----------------CCcEEE
Q 001163 480 VVTCGE--DRVIKVWDAVTGT----KQYIFEGH-ESPVYSICPHHKENIQFIFSTAT-----------------DGKIKA 535 (1134)
Q Consensus 480 l~s~s~--d~~i~iwd~~~~~----~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~-----------------dg~i~v 535 (1134)
++.-.. +.+|.+|++..+. .+.++.+. -...+.+.+.+ +|.+.++... .|.|..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 333333 5678888766532 22344432 23467777754 4466666431 234444
Q ss_pred EecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC-Cee--EEEecCCCCCceEEEEEcC-CCC
Q 001163 536 WLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE-GAV--KRTYHGLGKRSVGVVQFDT-TKN 611 (1134)
Q Consensus 536 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~-~~~ 611 (1134)
+|. .+... +...-..-+.++|+||++.++.+.. ....|+.|++.. ++. .+.+.. ......+++.+ +|+
T Consensus 208 ~d~--~~~~~-~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~~--~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 208 YSP--NDVRV-VAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLSF--DTLVDNISVDPVTGD 279 (355)
T ss_dssp ECT--TCCEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEEC--SSEEEEEEECTTTCC
T ss_pred EEC--CeEEE-eecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEeC--CCCCceEEEeCCCCc
Confidence 443 32222 2212235678999999999888753 244688898753 332 223321 23567789999 588
Q ss_pred EEEEEeCC-CeEEEEEcC--CCceeEEEe
Q 001163 612 RFLAAGDE-FMIKFWDMD--NVNLLASID 637 (1134)
Q Consensus 612 ~l~~~~~d-g~i~iwd~~--~~~~~~~~~ 637 (1134)
+.+++..+ +.|..|+.. .+..+..+.
T Consensus 280 lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 280 LWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred EEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 87766533 345555544 244444444
No 329
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.47 E-value=0.67 Score=49.57 Aligned_cols=235 Identities=9% Similarity=-0.030 Sum_probs=115.7
Q ss_pred EEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeC-----C------
Q 001163 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS-----K------ 439 (1134)
Q Consensus 371 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~-----d------ 439 (1134)
|++.|+ ..+.+||..+++- ... . +........+.+...++++++.|+. .
T Consensus 7 l~~~GG--~~~~~yd~~~~~W---------~~~--~-------~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 66 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANEC---------YCA--S-------LSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMS 66 (315)
T ss_dssp EEEEET--TEEEEEETTTTEE---------EEE--E-------CCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEE
T ss_pred EEEEcC--CceEEECCCCCeE---------ecC--C-------CCCCCCccceEEEEECCEEEEEcCcccCCCCCccccc
Confidence 556666 5699999988752 210 0 1111112223334457888888873 1
Q ss_pred CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC--------CeEEEEECCCCceeE--EecCCCcC
Q 001163 440 HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED--------RVIKVWDAVTGTKQY--IFEGHESP 509 (1134)
Q Consensus 440 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d--------~~i~iwd~~~~~~~~--~~~~h~~~ 509 (1134)
..+.+||..+++-. ....+......-..+.+ +++ +++.|+.+ ..+.++|..+++-.. .+......
T Consensus 67 ~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 141 (315)
T 4asc_A 67 AYFLQFDHLDSEWL-GMPPLPSPRCLFGLGEA--LNS--IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG 141 (315)
T ss_dssp EEEEEEETTTTEEE-ECCCBSSCEESCEEEEE--TTE--EEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred cceEEecCCCCeEE-ECCCCCcchhceeEEEE--CCE--EEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc
Confidence 12778888876522 11112111111112222 444 55666632 468899988775332 12111111
Q ss_pred EEEEeccccCCccEEEEecC-C-----CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCC-CeEEEEE
Q 001163 510 VYSICPHHKENIQFIFSTAT-D-----GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG-ESYLVEW 582 (1134)
Q Consensus 510 v~~~~~~~~~~~~~l~s~s~-d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~i~~w 582 (1134)
-.++. -++.+++.|+. + ..+.+||..+..-...-..........+..-+++.++.++.+..+ ...+.+|
T Consensus 142 ~~~~~----~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~y 217 (315)
T 4asc_A 142 HTVLS----HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVY 217 (315)
T ss_dssp CEEEE----ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEE
T ss_pred eeEEE----ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEE
Confidence 11222 12356777765 2 457888877543222211111111111222366777777754432 2358899
Q ss_pred eCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC--------------CeEEEEEcCCCceeEE
Q 001163 583 NESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE--------------FMIKFWDMDNVNLLAS 635 (1134)
Q Consensus 583 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~~~~~ 635 (1134)
|+.+.+....-.......-.+++. -++..++.|+.+ ..+.+||..+.+....
T Consensus 218 d~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 218 SITDNKWAPFEAFPQERSSLSLVS-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp ETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred ECCCCeEEECCCCCCcccceeEEE-ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 998876554332221111122222 255677777653 2467888887765444
No 330
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.41 E-value=0.23 Score=53.10 Aligned_cols=233 Identities=8% Similarity=-0.001 Sum_probs=115.4
Q ss_pred CCCCEEEEEeCC----CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC----C-----CeEEEEEC
Q 001163 428 PDGTLFGVAYSK----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE----D-----RVIKVWDA 494 (1134)
Q Consensus 428 pd~~~las~s~d----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~----d-----~~i~iwd~ 494 (1134)
-++.+++.|+.+ ..+.+||..+++-.. ...+......- +++. .++. +++.|+. + ..+.++|.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~~-~~~~--lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGL-AGCV-VGGL--LYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSC-EEEE-ETTE--EEEECCEEEETTEEEECCCEEEEET
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccc-eEEE-ECCE--EEEECCCcCCCCCCeecceEEEECC
Confidence 366777777642 358899988765322 11121111111 2222 2454 5666654 2 46888998
Q ss_pred CCCceeEE--ecCCCcCEEEEeccccCCccEEEEecCC-----CcEEEEecCCCCceeeecCCCC--CeeEEEECcCCCE
Q 001163 495 VTGTKQYI--FEGHESPVYSICPHHKENIQFIFSTATD-----GKIKAWLYDNLGSRVDYDAPGH--SSTMMAYSADGAR 565 (1134)
Q Consensus 495 ~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~ 565 (1134)
.+.+-... +......-..+.+ ++.+++.|+.+ ..+.+||..+..-...-..... ....+.+ +++.
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 171 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLL 171 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEE
T ss_pred CCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEE
Confidence 87754321 1111111122222 33667776643 3577888765432222111111 1122222 6677
Q ss_pred EEEEecCCCC-CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCceeEEEecC
Q 001163 566 LFSCGTNKEG-ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLLASIDAD 639 (1134)
Q Consensus 566 l~~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~ 639 (1134)
++.++.++.. ...+.+||+.+.+....-.......-.+++.. ++..++.|+.+ ..+.+||+.+.+....-...
T Consensus 172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 250 (308)
T 1zgk_A 172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK 250 (308)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS
T ss_pred EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCC
Confidence 7777654332 34588999988765432211111111222222 56667777653 56899999887654332221
Q ss_pred CCCCCcceEEEcCCCcEEEEEECC-----CcEEEEEccCC
Q 001163 640 GGLQASPCIRFNKEGILLAVSTND-----NGIKILANADG 674 (1134)
Q Consensus 640 ~~~~~v~~v~~sp~~~~l~~~~~d-----g~i~iw~~~~~ 674 (1134)
...... +++. -++++++.|+.+ ..+.+||+.+.
T Consensus 251 ~~r~~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 251 HRRSAL-GITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp SCCBSC-EEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCccce-EEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 111111 2222 256777777654 35677877665
No 331
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.35 E-value=0.81 Score=51.64 Aligned_cols=104 Identities=14% Similarity=0.136 Sum_probs=62.9
Q ss_pred CCeeEEEEcCCCCeEEEeeC-CeEEEEEccCCeE--EEEecC------CCCCeEEEEEcCC---CCcEEEEEeC------
Q 001163 844 DAVPCFALSKNDSYVMSASG-GKISLFNMMTFKT--MTTFMP------PPPAATFLAFHPQ---DNNIIAIGME------ 905 (1134)
Q Consensus 844 ~~v~~v~~s~dg~~la~~sd-g~i~lwd~~~~~~--~~~~~~------~~~~v~~l~~sp~---~~~~la~g~~------ 905 (1134)
...+.++|.|||+++++-.. +.|++++..+++. +..+.. .......|+|+|+ ++.+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 34579999999998888775 4798888655543 223321 2356779999994 3444444332
Q ss_pred ------CCcEEEEEcccc-------eEEE-eccC-ccCceEEEEEeeCCCEEEEEeC
Q 001163 906 ------DSSIQIYNVRVD-------EVKT-KLKG-HQKRITGLAFSNTLNVLVSSGA 947 (1134)
Q Consensus 906 ------dg~i~iwd~~~~-------~~~~-~l~~-h~~~V~~l~~s~d~~~l~s~s~ 947 (1134)
...|.-|++..+ +.+. .+.. .......|+|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234555555321 1221 1221 1123678999999998887664
No 332
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.33 E-value=0.29 Score=52.32 Aligned_cols=234 Identities=11% Similarity=0.054 Sum_probs=119.3
Q ss_pred cCCCCeEEEee-C----CeEEEEEccCCeEEEEecCCCCC-eEEEEEcCCCCcEEEEEeC----C-----CcEEEEEccc
Q 001163 852 SKNDSYVMSAS-G----GKISLFNMMTFKTMTTFMPPPPA-ATFLAFHPQDNNIIAIGME----D-----SSIQIYNVRV 916 (1134)
Q Consensus 852 s~dg~~la~~s-d----g~i~lwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~~la~g~~----d-----g~i~iwd~~~ 916 (1134)
.-++.+++.|+ + ..+.+||..+.+-...-...... -.+++.. ++++++.|+. + ..+.+||..+
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 34556666665 2 45899998776533221111111 1222332 5678888776 2 3688899887
Q ss_pred ceEEE--eccCccCceEEEEEeeCCCEEEEEeCC-----CcEEEEECCCCccccceeee-ecCCCCCCCCCceEEEEcCC
Q 001163 917 DEVKT--KLKGHQKRITGLAFSNTLNVLVSSGAD-----SQLCVWSTDGWEKQASKFLT-IPNGRTASALADTRVQFHLD 988 (1134)
Q Consensus 917 ~~~~~--~l~~h~~~V~~l~~s~d~~~l~s~s~D-----g~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~fs~d 988 (1134)
.+-.. .+......-..+. -++++++.|+.+ ..+.+||+.+.+ +..+. .+... .....+.+ +
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~r----~~~~~~~~--~ 168 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDE---WHLVAPMLTRR----IGVGVAVL--N 168 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTE---EEECCCCSSCC----BSCEEEEE--T
T ss_pred CeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCe---EeECCCCCccc----cceEEEEE--C
Confidence 65332 2221111112222 367777777654 358889987744 22221 11111 11222222 5
Q ss_pred CCEEEEE-ee-----ceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecC-----CcEEEeecCCCcceee
Q 001163 989 QTHLLAV-HE-----TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEE-----GSVGVLTASTLRLRCR 1057 (1134)
Q Consensus 989 g~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D-----g~i~vwd~~~~~~~~~ 1057 (1134)
+++++.+ .+ ..+.+||..+.+....-........-..+.+ ++++++.|+.+ ..+.+||+.+.+....
T Consensus 169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 246 (308)
T 1zgk_A 169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFV 246 (308)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence 6666653 32 4689999887653322111111111122222 77777777765 5689999988765422
Q ss_pred cCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCC-----cEEEEeCCCCCCCccCCC
Q 001163 1058 INPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDG-----GVYIIEPLEAEGRWGTSP 1112 (1134)
Q Consensus 1058 ~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg-----~v~vW~~~~~~~~~~~~~ 1112 (1134)
. .+|..... ..+++. ++.+++.|+.++ .+.+||+.. .+|...+
T Consensus 247 -~---~~p~~r~~--~~~~~~----~~~i~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~ 294 (308)
T 1zgk_A 247 -A---PMKHRRSA--LGITVH----QGRIYVLGGYDGHTFLDSVECYDPDT--DTWSEVT 294 (308)
T ss_dssp -C---CCSSCCBS--CEEEEE----TTEEEEECCBCSSCBCCEEEEEETTT--TEEEEEE
T ss_pred -C---CCCCCccc--eEEEEE----CCEEEEEcCcCCCcccceEEEEcCCC--CEEeecC
Confidence 1 11211111 122222 567888887654 467777765 4587643
No 333
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.013 Score=62.82 Aligned_cols=202 Identities=9% Similarity=0.032 Sum_probs=109.8
Q ss_pred cEEEEEeCCCcEEEEEcccceEEEeccCc-cCceEEEEE---eeCCCEEEEE-eCCCcEEEEECCCCccccceeeeecCC
Q 001163 898 NIIAIGMEDSSIQIYNVRVDEVKTKLKGH-QKRITGLAF---SNTLNVLVSS-GADSQLCVWSTDGWEKQASKFLTIPNG 972 (1134)
Q Consensus 898 ~~la~g~~dg~i~iwd~~~~~~~~~l~~h-~~~V~~l~~---s~d~~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~ 972 (1134)
.++++++.||.|.-+|..+|+.+.+++.. ..++....- ..++..++.. +.||.|..++..+|...- ...+..-
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~--~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL--PLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE--EEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe--eeccccc
Confidence 47889999999999999999998887654 122222110 0123333333 589999999988764321 1111110
Q ss_pred CCCCCCCceE---EEE------cCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccC-----EEEEEEc-----cCCC
Q 001163 973 RTASALADTR---VQF------HLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGP-----ITHATYS-----CDSQ 1033 (1134)
Q Consensus 973 ~~~~~~~v~~---l~f------s~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~-----v~~~~~s-----~dg~ 1033 (1134)
... .++.. ... +.+|..++.+.++++.-.|+.+|+.+..+....-.+. ..|.... ..+.
T Consensus 89 v~~--SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 89 VST--SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp HTT--CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred eec--cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence 000 01110 001 2455555557999999999999999988874321111 1112111 1245
Q ss_pred EEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCCCCc
Q 001163 1034 SIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRW 1108 (1134)
Q Consensus 1034 ~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~~~~ 1108 (1134)
.|+.+..+..+.+.+ .+|+ +..+....+.+......+.. .... ..|+.+ +.++.||.|.-.|...+...|
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~-~~~~-s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLAL-QNTF-SKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHT-TCSS-CSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEeccccccccccccccc-cccc-ccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 788888888888888 5565 43332111111110000000 0000 113455 457889999999998888888
No 334
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.99 E-value=0.89 Score=48.68 Aligned_cols=200 Identities=10% Similarity=-0.005 Sum_probs=95.3
Q ss_pred EEcCCCCEEEEEeC----CC-------EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC-------
Q 001163 425 MWSPDGTLFGVAYS----KH-------IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED------- 486 (1134)
Q Consensus 425 ~~spd~~~las~s~----dg-------~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d------- 486 (1134)
+...++.+++.|+. ++ .+.+||..+++-.. ...+.........+.+ +++ +++.|+.+
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~ 126 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVG-LPPLPSARCLFGLGEV--DDK--IYVVAGKDLQTEASL 126 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEE-CSCBSSCBCSCEEEEE--TTE--EEEEEEEBTTTCCEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEE-CCCCCccccccceEEE--CCE--EEEEcCccCCCCccc
Confidence 34457888888873 12 27778887765322 1122211111122222 444 55566543
Q ss_pred CeEEEEECCCCceeEE--ecCCCcCEEEEeccccCCccEEEEecC------CCcEEEEecCCCCceeeecCCCCCe-eEE
Q 001163 487 RVIKVWDAVTGTKQYI--FEGHESPVYSICPHHKENIQFIFSTAT------DGKIKAWLYDNLGSRVDYDAPGHSS-TMM 557 (1134)
Q Consensus 487 ~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~v-~~~ 557 (1134)
..+.++|..+.+-... +......-.++. .++.+++.|+. -..+.+||+.+..-...-....... .++
T Consensus 127 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 202 (318)
T 2woz_A 127 DSVLCYDPVAAKWSEVKNLPIKVYGHNVIS----HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGV 202 (318)
T ss_dssp EEEEEEETTTTEEEEECCCSSCEESCEEEE----ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred ceEEEEeCCCCCEeECCCCCCcccccEEEE----ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceE
Confidence 3577889887654332 111111111111 23366666664 2358888887643222211111111 122
Q ss_pred EECcCCCEEEEEecCCCC-CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC--------------CeE
Q 001163 558 AYSADGARLFSCGTNKEG-ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE--------------FMI 622 (1134)
Q Consensus 558 ~~s~~~~~l~~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i 622 (1134)
+ .-+++.++.++.+..+ ...+.+||+.+.+....-.......-.+++ ..++..++.|+.+ ..+
T Consensus 203 ~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v 280 (318)
T 2woz_A 203 A-IHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDI 280 (318)
T ss_dssp E-EETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-EETTEEEEECCBCCBC----CCBCCBCCCE
T ss_pred E-EECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-EECCEEEEECCeeccCCCCceeccceeeeE
Confidence 2 2366777777654322 245788999887644322111111111222 2345666666643 346
Q ss_pred EEEEcCCCceeEE
Q 001163 623 KFWDMDNVNLLAS 635 (1134)
Q Consensus 623 ~iwd~~~~~~~~~ 635 (1134)
.+||..+.+....
T Consensus 281 ~~yd~~~~~W~~~ 293 (318)
T 2woz_A 281 WKYEDDKKEWAGM 293 (318)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEeCCCCEehhh
Confidence 7777777655443
No 335
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.89 E-value=0.22 Score=62.42 Aligned_cols=199 Identities=13% Similarity=0.128 Sum_probs=128.1
Q ss_pred EEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc-ceEEEeccCc
Q 001163 848 CFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-DEVKTKLKGH 926 (1134)
Q Consensus 848 ~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~-~~~~~~l~~h 926 (1134)
+.-++|..+.+|.-...++.|+|+++.+.+..+.- ...|..=.|-. .+.|+..+ +..|+-|++.. ..+++.+..|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence 45577888888887788899999998888777663 34566667764 34555554 55799999964 2444555555
Q ss_pred ----cCceEEEEEeeCCCEEEEEe-------CCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEE---cCCCCEE
Q 001163 927 ----QKRITGLAFSNTLNVLVSSG-------ADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQF---HLDQTHL 992 (1134)
Q Consensus 927 ----~~~V~~l~~s~d~~~l~s~s-------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~f---s~dg~~l 992 (1134)
...|..-..+++.++++..| ..|.+.+|+++.+. .+..+||.. .-..+.+ .+....+
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ~iegha~---~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA---SFAQFKMEGNAEESTLF 216 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------chhhhHhHh---hhheeccCCCCCCceEE
Confidence 45677778889999888654 35789999988743 344455542 1111111 1112233
Q ss_pred EEEe----eceEEEEeCCCc---c-c-----ceeec-cCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeec
Q 001163 993 LAVH----ETQIAIYEAPKL---E-C-----LKQFV-PREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRI 1058 (1134)
Q Consensus 993 ~~~~----d~~i~iwd~~~~---~-~-----~~~~~-~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~ 1058 (1134)
+.+. .+.+.|-++... . . +..+. +..-.+-..++..|+.-..+...+.-|.|.+||+.||..+.+-
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 3232 368888888543 1 1 11111 1112444567788888888888889999999999999987554
Q ss_pred C
Q 001163 1059 N 1059 (1134)
Q Consensus 1059 ~ 1059 (1134)
.
T Consensus 297 r 297 (1630)
T 1xi4_A 297 R 297 (1630)
T ss_pred c
Confidence 4
No 336
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.88 E-value=0.42 Score=52.34 Aligned_cols=242 Identities=11% Similarity=0.068 Sum_probs=114.4
Q ss_pred CCCeEEEee--CCeEEEEEccC----CeEEEEec-CCCCCeEEEEEcCCCCcEEEEEeC-C---------CcEEEEEccc
Q 001163 854 NDSYVMSAS--GGKISLFNMMT----FKTMTTFM-PPPPAATFLAFHPQDNNIIAIGME-D---------SSIQIYNVRV 916 (1134)
Q Consensus 854 dg~~la~~s--dg~i~lwd~~~----~~~~~~~~-~~~~~v~~l~~sp~~~~~la~g~~-d---------g~i~iwd~~~ 916 (1134)
++++++.|+ ...+.++|..+ ++.+..+. .......++.+ ++++++.|+. + ..+.+||..+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 677777775 46799999864 22222222 11112223332 5678888776 2 3688999887
Q ss_pred ceEEEeccCc-cCceEEEEEeeCCCEEEEEeCC---------------------------------------CcEEEEEC
Q 001163 917 DEVKTKLKGH-QKRITGLAFSNTLNVLVSSGAD---------------------------------------SQLCVWST 956 (1134)
Q Consensus 917 ~~~~~~l~~h-~~~V~~l~~s~d~~~l~s~s~D---------------------------------------g~i~iwd~ 956 (1134)
.+-...-... .......+...++++++.||.+ ..+.+||+
T Consensus 96 ~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 175 (357)
T 2uvk_A 96 NSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP 175 (357)
T ss_dssp TEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred CcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence 6533221111 1112222233578888888865 46888998
Q ss_pred CCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-e------eceEEEEeC--CCcccceeeccCCCccCEEEEE
Q 001163 957 DGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-H------ETQIAIYEA--PKLECLKQFVPREASGPITHAT 1027 (1134)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~------d~~i~iwd~--~~~~~~~~~~~~~h~~~v~~~~ 1027 (1134)
.+.+ +..+....... ..-.+++. -++++++.+ . ...+.+||+ .+.+....-............+
T Consensus 176 ~~~~---W~~~~~~p~~~---~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~ 248 (357)
T 2uvk_A 176 STQQ---WSYAGESPWYG---TAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFA 248 (357)
T ss_dssp TTTE---EEEEEECSSCC---CBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEE
T ss_pred CCCc---EEECCCCCCCC---cccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceE
Confidence 7754 22222111000 01022222 255555553 2 235777877 4333221111000011111112
Q ss_pred EccCCCEEEEEecC----------------------CcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCC
Q 001163 1028 YSCDSQSIYVAFEE----------------------GSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPN 1085 (1134)
Q Consensus 1028 ~s~dg~~l~s~s~D----------------------g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~ 1085 (1134)
...++++++.|+.+ ..+.+||..+.+.... . .+|..... ..++.+ +++
T Consensus 249 ~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~-~---~~p~~r~~---~~~~~~---~~~ 318 (357)
T 2uvk_A 249 GISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS-G---ELSQGRAY---GVSLPW---NNS 318 (357)
T ss_dssp EEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE-E---ECSSCCBS---SEEEEE---TTE
T ss_pred EEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC-C---CCCCCccc---ceeEEe---CCE
Confidence 33477777777743 2577899887765432 1 12222111 111221 578
Q ss_pred EEEEEecCCc----EEEEeCCCCCCCccCCCCCC
Q 001163 1086 QFALGLTDGG----VYIIEPLEAEGRWGTSPPNE 1115 (1134)
Q Consensus 1086 ~l~s~~~Dg~----v~vW~~~~~~~~~~~~~~~~ 1115 (1134)
+++.|+.++. =.+|-+.-..++|....|..
T Consensus 319 i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~ 352 (357)
T 2uvk_A 319 LLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEH 352 (357)
T ss_dssp EEEEEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred EEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence 8888986542 23554444456687766544
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.77 E-value=0.61 Score=50.01 Aligned_cols=230 Identities=12% Similarity=0.018 Sum_probs=109.8
Q ss_pred EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC----CC-------eEEEEECCCCcee
Q 001163 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE----DR-------VIKVWDAVTGTKQ 500 (1134)
Q Consensus 432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~----d~-------~i~iwd~~~~~~~ 500 (1134)
+++.|+. .+..||..+++-.. ..+..........+...++. +++.|+. ++ .+.++|..+++-.
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~ 91 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV 91 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEE
T ss_pred hhhcccc--ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEE
Confidence 3444443 37899998876433 12222112222223344555 5666662 11 2778888776543
Q ss_pred EE--ecCCCcCEEEEeccccCCccEEEEecCC-------CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEec
Q 001163 501 YI--FEGHESPVYSICPHHKENIQFIFSTATD-------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGT 571 (1134)
Q Consensus 501 ~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d-------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 571 (1134)
.. +......-..+.+ ++.+++.|+.+ ..+.+||..+..-...-..........+...+++.++.++.
T Consensus 92 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 167 (318)
T 2woz_A 92 GLPPLPSARCLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGK 167 (318)
T ss_dssp ECSCBSSCBCSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCE
T ss_pred ECCCCCccccccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCC
Confidence 31 1111111112221 23666777653 24677777654322221111111111122246677777664
Q ss_pred CCC--CCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCceeEEEecCCCCCC
Q 001163 572 NKE--GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLLASIDADGGLQA 644 (1134)
Q Consensus 572 ~~~--~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~ 644 (1134)
+.. ....+.+||+.+.+....-.......-.+++. -++..++.|+.+ ..+.+||..+.+....-..... .
T Consensus 168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r 244 (318)
T 2woz_A 168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--R 244 (318)
T ss_dssp ESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--C
T ss_pred CCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--c
Confidence 221 12348999998876544322221111122222 256677777632 3577899887764433221111 1
Q ss_pred cceEEEcCCCcEEEEEECC--------------CcEEEEEccCC
Q 001163 645 SPCIRFNKEGILLAVSTND--------------NGIKILANADG 674 (1134)
Q Consensus 645 v~~v~~sp~~~~l~~~~~d--------------g~i~iw~~~~~ 674 (1134)
....+..-++.+++.|+.+ ..+.+||+.+.
T Consensus 245 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 245 SSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp BSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred cceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 1112222356777777653 35677777665
No 338
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.76 E-value=2 Score=45.37 Aligned_cols=174 Identities=12% Similarity=0.097 Sum_probs=101.3
Q ss_pred EEEcCCCCeEEEee-C--------------CeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEe--CC--CcE
Q 001163 849 FALSKNDSYVMSAS-G--------------GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGM--ED--SSI 909 (1134)
Q Consensus 849 v~~s~dg~~la~~s-d--------------g~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~--~d--g~i 909 (1134)
--++++|.+|+-.. . ..|+..++...+...... .. +..|++ ++++|+... .+ ..|
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~~--~~~~s~-~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---DP--CIYASL-IGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---SC--EEEEEE-ETTEEEEEEESSSSCEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---CC--ccEEEE-eCCEEEEEeecCCCCceE
Confidence 45678898888775 2 247777777665333222 11 236777 666777665 33 455
Q ss_pred EEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeC-CCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCC
Q 001163 910 QIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGA-DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD 988 (1134)
Q Consensus 910 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d 988 (1134)
+..++.. .....+..+.. .+|+++++.|+-.+. ..+|..-++.++... .+ ..+. ....++|+
T Consensus 132 y~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~---~l--~~~~-------~~~~~~P~ 194 (302)
T 3s25_A 132 YRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA---LF--YDCN-------CYKPVVLD 194 (302)
T ss_dssp EEEETTS-CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE---EE--ECSC-------EEEEEEEE
T ss_pred EEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE---EE--eCCC-------ccceeeec
Confidence 5556553 33344443432 457888988886655 567888888775421 11 2221 12346799
Q ss_pred CCEEEEEe-e--ceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEec--CCcEEEeecCCC
Q 001163 989 QTHLLAVH-E--TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFE--EGSVGVLTASTL 1052 (1134)
Q Consensus 989 g~~l~~~~-d--~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~--Dg~i~vwd~~~~ 1052 (1134)
+.+|+-+. + ..|..-++.... ...+. ...+ ..|+|+|++|+-++. .+.|..-+++..
T Consensus 195 g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt----~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 195 DTNVYYMDVNRDNAIVHVNINNPN-PVVLT----EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp TTEEEEEEGGGTTEEEEECSSSCC-CEECS----CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred CCEEEEEEcCCCcEEEEEECCCCC-eEEEe----CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 99998753 2 356666666444 33333 2233 348889999876533 356666666543
No 339
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.75 E-value=0.12 Score=50.60 Aligned_cols=144 Identities=8% Similarity=-0.041 Sum_probs=81.6
Q ss_pred CCcEEEEEeCCCcEEEEEcccceE------EEeccCc--cCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCcccccee-
Q 001163 896 DNNIIAIGMEDSSIQIYNVRVDEV------KTKLKGH--QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKF- 966 (1134)
Q Consensus 896 ~~~~la~g~~dg~i~iwd~~~~~~------~~~l~~h--~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~- 966 (1134)
...+|++..+| +++.=...++.. ..++ ++ =..+..++|+|+|.+.+. .+|.+.-.+..+.......-
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s 78 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR 78 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc
Confidence 34566666666 655544443321 1111 12 136779999999986666 67765555543322211110
Q ss_pred -eeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeec------cCCCccCEEEEEEccCCCEEEEEe
Q 001163 967 -LTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFV------PREASGPITHATYSCDSQSIYVAF 1039 (1134)
Q Consensus 967 -~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~------~~~h~~~v~~~~~s~dg~~l~s~s 1039 (1134)
..+-.... ..-.++.|.|+|.+.++ .||.|+-++-.+...- .+. ...--..+..|.|.|+|.+-+..
T Consensus 79 ~t~IG~~Gw---~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~-~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~- 152 (236)
T 1tl2_A 79 AKKIGNGGW---NQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTD-NWIARATEVGSGGWSGFKFLFFHPNGYLYAVH- 152 (236)
T ss_dssp CEEEECSCG---GGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTC-CHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred ccEeccccc---ccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCC-ceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence 11111111 12478999999998888 7799988876442221 111 01112578999999999987766
Q ss_pred cCCcEEEeecC
Q 001163 1040 EEGSVGVLTAS 1050 (1134)
Q Consensus 1040 ~Dg~i~vwd~~ 1050 (1134)
|+.+.-+.-.
T Consensus 153 -dg~lyr~~~P 162 (236)
T 1tl2_A 153 -GQQFYKALPP 162 (236)
T ss_dssp -TTEEEEECCC
T ss_pred -CCcEEecCCC
Confidence 7765444433
No 340
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.53 E-value=0.087 Score=51.49 Aligned_cols=146 Identities=12% Similarity=0.045 Sum_probs=86.0
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEE------Eecc--CccCceEEEEEeeCCCEEEEEeCCCcEEEEEC
Q 001163 885 PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK------TKLK--GHQKRITGLAFSNTLNVLVSSGADSQLCVWST 956 (1134)
Q Consensus 885 ~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~------~~l~--~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~ 956 (1134)
..++.++|+| ++.+.++ .+|.++-.+..+++.. ..+- +-.. -.++.|.++|.+.++ .||.|.-++-
T Consensus 41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 3677999999 8887777 6776666555442110 1110 1111 478999999988887 5698888876
Q ss_pred CCCcccccee--eeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccc-----eeeccCCCccCEEEEEEc
Q 001163 957 DGWEKQASKF--LTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECL-----KQFVPREASGPITHATYS 1029 (1134)
Q Consensus 957 ~~~~~~~~~~--~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~-----~~~~~~~h~~~v~~~~~s 1029 (1134)
.+.....+.- ..+-.+.- ..+..+.|.|+|.+.++. |+.++-....+.... ...........-+-+.|+
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw---~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~ 190 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGW---SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS 190 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSG---GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred CcCCCCceeccccEeccCCC---CceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence 4433222111 11111111 247899999999998888 888654444322211 111111223455567789
Q ss_pred cCCCEEEEEecCC
Q 001163 1030 CDSQSIYVAFEEG 1042 (1134)
Q Consensus 1030 ~dg~~l~s~s~Dg 1042 (1134)
++|.+.++. ++
T Consensus 191 ~~G~l~~v~--~g 201 (236)
T 1tl2_A 191 SVGTLFGVQ--GG 201 (236)
T ss_dssp TTSCEEEEE--TT
T ss_pred CCCcEEEEe--CC
Confidence 998877665 66
No 341
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=95.35 E-value=0.012 Score=47.26 Aligned_cols=56 Identities=14% Similarity=0.231 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHhhhcCHHHHHHHHHHhcCCCcc--HHHHHHHhhcccHHHHHHHHccc
Q 001163 5 SRELVFLILQFLDEEKFKETVHKLEQDSGFFFN--MRYFEDMVTNGEWDEVEKYLSGF 60 (1134)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~l~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l~~~ 60 (1134)
++|+.+-|++||..+||.+++.+|.+|.++..+ ...-.+.+++-.|..++++-+++
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKKI 67 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKV 67 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHHH
Confidence 578999999999999999999999999998875 22235667788888887765544
No 342
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.33 E-value=0.59 Score=52.36 Aligned_cols=101 Identities=16% Similarity=0.092 Sum_probs=70.9
Q ss_pred CCCeeEEEEcCCCCeEEEee--CCeEEEEEccCCe------E-------EEEecCCCCCeEEEEEcCCCCcEEEEEeCCC
Q 001163 843 EDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFK------T-------MTTFMPPPPAATFLAFHPQDNNIIAIGMEDS 907 (1134)
Q Consensus 843 ~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~------~-------~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg 907 (1134)
......+.++|||+++++++ +.++.++|++... . ..+.. ..-...-.+|.+ +|....+-.-|.
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidS 399 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDS 399 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTT
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecc
Confidence 34556789999999999987 7889999987421 1 22222 234567889999 776666667899
Q ss_pred cEEEEEcccc----------eEEEeccCccCceEEEEE------eeCCCEEEEEe
Q 001163 908 SIQIYNVRVD----------EVKTKLKGHQKRITGLAF------SNTLNVLVSSG 946 (1134)
Q Consensus 908 ~i~iwd~~~~----------~~~~~l~~h~~~V~~l~~------s~d~~~l~s~s 946 (1134)
.|.-|++... ..+.++.-|-.+- .+.- .+||++|++..
T Consensus 400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEE
T ss_pred eEEEEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEec
Confidence 9999999764 4566666665432 2322 47899999874
No 343
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.90 E-value=0.44 Score=50.92 Aligned_cols=196 Identities=10% Similarity=-0.011 Sum_probs=100.8
Q ss_pred eEEEee-CCeEEEEEccCCeEEEEecCC-CCCeEEEEE--cCCCCcEEEEE-eCCCcEEEEEcccceEEEeccC----cc
Q 001163 857 YVMSAS-GGKISLFNMMTFKTMTTFMPP-PPAATFLAF--HPQDNNIIAIG-MEDSSIQIYNVRVDEVKTKLKG----HQ 927 (1134)
Q Consensus 857 ~la~~s-dg~i~lwd~~~~~~~~~~~~~-~~~v~~l~~--sp~~~~~la~g-~~dg~i~iwd~~~~~~~~~l~~----h~ 927 (1134)
++++++ ||.|.-+|..+|+.+.+++.. ..++....- .+.++..++.. +.||.|..++..+|.....+.. ..
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 455555 999999999999999998754 122221110 01133444444 6899999999888855433321 12
Q ss_pred CceEE---EEE-----eeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEE---Ec--CCCCEEEE
Q 001163 928 KRITG---LAF-----SNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQ---FH--LDQTHLLA 994 (1134)
Q Consensus 928 ~~V~~---l~~-----s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~---fs--~dg~~l~~ 994 (1134)
.++.. ..+ +..+..+++++.++.+...|+.+|+..-........+.... ....|.. +. ..+..++.
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~-~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGS-QSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC---------------------CCEEEE
T ss_pred cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccc-cccccccccccccccCCCeEEE
Confidence 22221 000 01455788999999999999999874321111111110000 0001111 10 12344555
Q ss_pred -EeeceEEEEeCCCcccceeeccCCCcc-CE-----EEEEEccCCCEEEEEecCCcEEEeecCCCccee
Q 001163 995 -VHETQIAIYEAPKLECLKQFVPREASG-PI-----THATYSCDSQSIYVAFEEGSVGVLTASTLRLRC 1056 (1134)
Q Consensus 995 -~~d~~i~iwd~~~~~~~~~~~~~~h~~-~v-----~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~ 1056 (1134)
..+..+.+.+ ++|+ +..+....... .+ .+..++.|+.+ +.++.||.|.-+|..+|+.+.
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 4677777777 4554 22211000000 00 00011245777 447889999999999998876
No 344
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.89 E-value=1.8 Score=47.04 Aligned_cols=147 Identities=8% Similarity=-0.006 Sum_probs=67.7
Q ss_pred CeEEEEECCCCceeE--EecCCCcCEEEEeccccCCccEEEEecC------CCcEEEEecCCCCceeeecC----CCCCe
Q 001163 487 RVIKVWDAVTGTKQY--IFEGHESPVYSICPHHKENIQFIFSTAT------DGKIKAWLYDNLGSRVDYDA----PGHSS 554 (1134)
Q Consensus 487 ~~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~----~~~~v 554 (1134)
..+.++|..+.+-.. .+......-.+++.. ++.+++.|+. ...+.+||++.......... .....
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~ 244 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK---GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVA 244 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE---TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCB
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE---CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccc
Confidence 578899988775433 222111110122221 2356666654 23566777633332222211 11111
Q ss_pred eEEEECcCCCEEEEEecCCCC------------------CeEEEEEeCCCCeeEE--EecCCCCCceEEEEEcCCCCEEE
Q 001163 555 TMMAYSADGARLFSCGTNKEG------------------ESYLVEWNESEGAVKR--TYHGLGKRSVGVVQFDTTKNRFL 614 (1134)
Q Consensus 555 ~~~~~s~~~~~l~~~~~~~~~------------------~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~ 614 (1134)
...+...+++.++.++.+.++ ...+.+||+.+.+... .+..... .. .++..+++.++
T Consensus 245 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~--~~~~~~~~i~v 321 (357)
T 2uvk_A 245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRA-YG--VSLPWNNSLLI 321 (357)
T ss_dssp SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCB-SS--EEEEETTEEEE
T ss_pred cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcc-cc--eeEEeCCEEEE
Confidence 222333466777777643211 1347889988765433 3332221 11 22334667788
Q ss_pred EEeCCC------eEEEEEcCCCceeEEEecC
Q 001163 615 AAGDEF------MIKFWDMDNVNLLASIDAD 639 (1134)
Q Consensus 615 ~~~~dg------~i~iwd~~~~~~~~~~~~~ 639 (1134)
.|+.++ .|.++++++++.+.....+
T Consensus 322 ~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~ 352 (357)
T 2uvk_A 322 IGGETAGGKAVTDSVLITVKDNKVTVQNLEH 352 (357)
T ss_dssp EEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred EeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence 888442 4666788888877765543
No 345
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.67 E-value=1.7 Score=54.67 Aligned_cols=259 Identities=8% Similarity=0.090 Sum_probs=139.5
Q ss_pred CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeee
Q 001163 379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLE 458 (1134)
Q Consensus 379 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~ 458 (1134)
..|.|-|+.++..+.++++ .--+.-.+|..+.+|.=. ..++.|+|+++.+.++.
T Consensus 48 ~~vvIidl~~~~~~~rrpi----------------------~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks--- 101 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRPI----------------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA--- 101 (1630)
T ss_pred ceEEEEECCCCCCcccccc----------------------cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcc---
Confidence 3688888887765443222 222344567777666654 67899999998775552
Q ss_pred eecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC-CceeEEecCC----CcCEEEEeccccCCccEEEEec-----
Q 001163 459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT-GTKQYIFEGH----ESPVYSICPHHKENIQFIFSTA----- 528 (1134)
Q Consensus 459 l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s~s----- 528 (1134)
.. ...+|..=.|-.+.. +.||| +..|..|++.. ..+++.|..| ...|..-. .+++.++++..+
T Consensus 102 ~~-~~e~VvfWkWis~~~-l~lVT---~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~--~d~~~kW~~l~gi~~~~ 174 (1630)
T 1xi4_A 102 HT-MTDDVTFWKWISLNT-VALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYR--TDAKQKWLLLTGISAQQ 174 (1630)
T ss_pred cc-cCCCceEEEecCCCe-eEEEc---CCeEEEeccCCCCccHHHHhcchhcccCeeEEee--eCCCCCeEEEEeeccCC
Confidence 22 234576677765554 23444 35899999964 3455555544 23343333 344545554332
Q ss_pred --CCCcEEEEecCCCCceeeecCCCCCeeEEEEC--cC-CCEEEEEecCCCCCeEEEEEeCCCC---ee------EEEec
Q 001163 529 --TDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYS--AD-GARLFSCGTNKEGESYLVEWNESEG---AV------KRTYH 594 (1134)
Q Consensus 529 --~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s--~~-~~~l~~~~~~~~~~~~i~~wd~~~~---~~------~~~~~ 594 (1134)
-.|.+.+|..+... ...+.+|......+... +. ...++.+..... .+.+++.++... .. +..+-
T Consensus 175 ~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~-g~kLhi~Ei~~~~~~~~~f~kk~~~~~~ 252 (1630)
T 1xi4_A 175 NRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA-GGKLHIIEVGTPPTGNQPFPKKAVDVFF 252 (1630)
T ss_pred Ccccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCC-CceEEEEecCCCccCCCCCccccccccC
Confidence 34778888776432 22233333322222221 11 122222222111 245778777432 11 11111
Q ss_pred CC--CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEcc
Q 001163 595 GL--GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (1134)
Q Consensus 595 ~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 672 (1134)
.. ......++..++....++..+.-|.|.++|+.++.++..-... ..+|...+.+....-+++....|.|.-..+.
T Consensus 253 ~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris--~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~ 330 (1630)
T 1xi4_A 253 PPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (1630)
T ss_pred CcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcccc--CCceEEeccCCCCCceEEEcCCceEEEEEEc
Confidence 11 1123345777888888999999999999999999987665433 2244433334333334444466666555554
Q ss_pred CC
Q 001163 673 DG 674 (1134)
Q Consensus 673 ~~ 674 (1134)
..
T Consensus 331 ~~ 332 (1630)
T 1xi4_A 331 EE 332 (1630)
T ss_pred cc
Confidence 43
No 346
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.88 E-value=7.4 Score=40.85 Aligned_cols=181 Identities=9% Similarity=0.047 Sum_probs=99.1
Q ss_pred EEEEcCCCCeEEEEEeCC-------------CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163 361 SMDFHPVQQILLVVGTNM-------------GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1134)
Q Consensus 361 ~v~fsp~g~~lla~gs~d-------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (1134)
+--|+++|.+|..+...+ ..|+..+++.++... +.. .. +..|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~--~~--~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDP--DP--CIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EEC--SC--EEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eec--CC--ccEEE
Confidence 345789999888776654 456777776654322 111 11 23788
Q ss_pred CCCCEEEEEe--C--CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe
Q 001163 428 PDGTLFGVAY--S--KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF 503 (1134)
Q Consensus 428 pd~~~las~s--~--dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 503 (1134)
+++++|+-.. . +..|..-++.... .. .+..+.. .+|+++++. +..+......|.+-++..+.....+
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence 8999998876 3 3445555665433 22 2433432 457888985 2334334678888887766544433
Q ss_pred cCCCcCEEEEeccccCCccEEEEecCC--CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEE
Q 001163 504 EGHESPVYSICPHHKENIQFIFSTATD--GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581 (1134)
Q Consensus 504 ~~h~~~v~~~~~~~~~~~~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 581 (1134)
.+ ... ..++|. +.+|+-...+ ..|..-+++..... .+. ...+ ..++|++++|+.+.... ...|..
T Consensus 184 ~~---~~~-~~~~P~--g~~iy~t~~~~~~~I~~~~ldG~~~~-~Lt--~~~~--~~~~~~g~~Iy~~~~~~--~~~i~~ 250 (302)
T 3s25_A 184 DC---NCY-KPVVLD--DTNVYYMDVNRDNAIVHVNINNPNPV-VLT--EANI--EHYNVYGSLIFYQRGGD--NPALCV 250 (302)
T ss_dssp CS---CEE-EEEEEE--TTEEEEEEGGGTTEEEEECSSSCCCE-ECS--CSCE--EEEEEETTEEEEEECSS--SCEEEE
T ss_pred CC---Ccc-ceeeec--CCEEEEEEcCCCcEEEEEECCCCCeE-EEe--CCCc--ceEEECCCEEEEEECCC--CcEEEE
Confidence 32 222 233333 3455444322 34555555543322 222 1223 34788999987764322 245777
Q ss_pred EeCCCC
Q 001163 582 WNESEG 587 (1134)
Q Consensus 582 wd~~~~ 587 (1134)
.++...
T Consensus 251 ~~~DG~ 256 (302)
T 3s25_A 251 VKNDGT 256 (302)
T ss_dssp EETTSC
T ss_pred EECCCC
Confidence 776543
No 347
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.38 E-value=7.5 Score=43.66 Aligned_cols=110 Identities=12% Similarity=0.091 Sum_probs=64.1
Q ss_pred CceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCC--CCCCCceEEEEcCC---CCEEEEE--e----
Q 001163 928 KRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRT--ASALADTRVQFHLD---QTHLLAV--H---- 996 (1134)
Q Consensus 928 ~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~fs~d---g~~l~~~--~---- 996 (1134)
...++|+|.|+|+++++-...+.|++++..+++.. ....+..... .....+..++|+|| +.+|.++ .
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~--~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK--TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe--EEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 34679999999998877554456888876554422 1222222110 11245779999996 5566553 2
Q ss_pred --------eceEEEEeCCCc-------ccce-eeccCCCccCEEEEEEccCCCEEEEEec
Q 001163 997 --------ETQIAIYEAPKL-------ECLK-QFVPREASGPITHATYSCDSQSIYVAFE 1040 (1134)
Q Consensus 997 --------d~~i~iwd~~~~-------~~~~-~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 1040 (1134)
...|.-|+...+ +.+. .+. .........|+|.|||.+.++.++
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p-~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP-SSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC-CCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCC-CCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665432 1111 121 111234789999999998777654
No 348
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.22 E-value=3.6 Score=42.85 Aligned_cols=222 Identities=11% Similarity=0.050 Sum_probs=114.6
Q ss_pred CeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEecc
Q 001163 845 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK 924 (1134)
Q Consensus 845 ~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~ 924 (1134)
.|..++....-. ++.. ||.|+.|-....-.+.........|..++... ...++. . ||.|+.|-....-.+..-.
T Consensus 25 ~i~~ia~G~~h~-~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFHG-LALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSEE-EEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCeE-EEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 466666544322 3333 88888886543221111111234677777754 334444 5 8999999765321111111
Q ss_pred CccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEe
Q 001163 925 GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYE 1004 (1134)
Q Consensus 925 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd 1004 (1134)
.-...|..++...+. .+.-. ||.|..|-....-... +... ....|..++...+..+ +.. |+.|+.|-
T Consensus 99 ~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg---~~~~-----~~~~i~~i~~G~~~~~-~l~-~G~v~~wG 165 (282)
T 3qhy_B 99 EARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTT---VPAE-----AQSGVTALDGGVYTAL-AVK-NGGVIAWG 165 (282)
T ss_dssp GGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTS---CCGG-----GGSSEEEEEECSSEEE-EEE-TTEEEEEE
T ss_pred ccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCC---CCcc-----CCCCeEEEEcccCEEE-EEE-CCEEEEec
Confidence 113467777776443 33334 9999999865532211 0000 0134666655544332 234 89999998
Q ss_pred CCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCC
Q 001163 1005 APKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDP 1084 (1134)
Q Consensus 1005 ~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~ 1084 (1134)
......+.... .-...|..++...+... +. .||.|..|=....-.+. .+. .-...|..++.- ..
T Consensus 166 ~n~~gqlg~p~--~~~~~v~~i~~G~~hs~-al--~~G~v~~wG~n~~gqlg---~p~----~~~~~v~~i~~G----~~ 229 (282)
T 3qhy_B 166 DNYFGQTTVPA--EAQSGVDDVAGGIFHSL-AL--KDGKVIAWGDNRYKQTT---VPT----EALSGVSAIASG----EW 229 (282)
T ss_dssp CCTTSTTSCCG--GGGSSEEEEEECSSEEE-EE--ETTEEEEEECCTTSTTC---CCG----GGGSSCCEEEEC----SS
T ss_pred CCCCCCCCCce--ecCCCeEEEEecCCEEE-EE--ECCeEEEEECCCCCCCC---CCc----ccCCCceEEEcC----CC
Confidence 76544333221 11356777776544333 33 59999999765432221 111 111345555432 23
Q ss_pred CEEEEEecCCcEEEEeCCC
Q 001163 1085 NQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus 1085 ~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
..++.. ||.|+.|--..
T Consensus 230 h~~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 230 YSLALK--NGKVIAWGSSR 246 (282)
T ss_dssp CEEEEE--TTEEEEESTTC
T ss_pred EEEEEE--CCEEEEecCCC
Confidence 344444 99999996543
No 349
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.21 E-value=18 Score=40.61 Aligned_cols=55 Identities=20% Similarity=0.133 Sum_probs=35.4
Q ss_pred CEEEEEEcCCCC-EEEEEeCCCEEEEEEccCCceeeeeeeee---------cCCCCEEEEEEecC
Q 001163 420 SVNRVMWSPDGT-LFGVAYSKHIVHLYTYHGGDELRNHLEIE---------AHVGSVNDLAFSYP 474 (1134)
Q Consensus 420 ~V~~l~~spd~~-~las~s~dg~v~iwd~~~~~~~~~~~~l~---------~h~~~V~~v~~s~~ 474 (1134)
..+.|+|.|||. .|+++...|.|++++.........+..+. +.......|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 567899999996 56666788999999754321111111111 12456889999996
No 350
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.20 E-value=5.8 Score=47.55 Aligned_cols=197 Identities=13% Similarity=0.089 Sum_probs=105.3
Q ss_pred CCCCeEEEee-C----CeEEEEEccCCeEEEEe-c-------CCCCCeEEEEEcCCCCcEEEEEeCCC------cEEEEE
Q 001163 853 KNDSYVMSAS-G----GKISLFNMMTFKTMTTF-M-------PPPPAATFLAFHPQDNNIIAIGMEDS------SIQIYN 913 (1134)
Q Consensus 853 ~dg~~la~~s-d----g~i~lwd~~~~~~~~~~-~-------~~~~~v~~l~~sp~~~~~la~g~~dg------~i~iwd 913 (1134)
.++.+++.|+ + +.+.+||..+.+-...- . .....-.++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5667777765 3 35889998776433222 1 1112234445543 567888887543 588899
Q ss_pred cccceEEE--eccCccCceEEEEEeeCCCEEEEEeCCC--cEEEEECCCCccccceeeeecCCCCC-CCCCceEEEEcCC
Q 001163 914 VRVDEVKT--KLKGHQKRITGLAFSNTLNVLVSSGADS--QLCVWSTDGWEKQASKFLTIPNGRTA-SALADTRVQFHLD 988 (1134)
Q Consensus 914 ~~~~~~~~--~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~fs~d 988 (1134)
..+.+-.. .+......- +++...++++++.||.++ .+.+||+.+.. +..+... +..+ ......++.+..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~---W~~~~~~-g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEI---FKDVTPK-DEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTE---EEECCCS-SGGGGSCCBSCEEEEETT
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCc---eEEccCC-CCCCCcccceeEEEEeCC
Confidence 88754322 222111111 222224788888888765 68999988754 3222210 0000 0012344555655
Q ss_pred -CCEEEEE-e--e-----ceEEEEeCCCccc-----ceeecc-CCCccCEEEEEEccCCCEEEEEecC--------CcEE
Q 001163 989 -QTHLLAV-H--E-----TQIAIYEAPKLEC-----LKQFVP-REASGPITHATYSCDSQSIYVAFEE--------GSVG 1045 (1134)
Q Consensus 989 -g~~l~~~-~--d-----~~i~iwd~~~~~~-----~~~~~~-~~h~~~v~~~~~s~dg~~l~s~s~D--------g~i~ 1045 (1134)
+++++.| . + ..+.+||..+... ...+.. ......-.+++...++++++.|+.+ ..|.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 5555554 3 2 4589999988772 111110 0000011123333447888888743 4699
Q ss_pred EeecCCCcce
Q 001163 1046 VLTASTLRLR 1055 (1134)
Q Consensus 1046 vwd~~~~~~~ 1055 (1134)
+||..+.+..
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999988765
No 351
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=91.31 E-value=20 Score=39.32 Aligned_cols=259 Identities=12% Similarity=0.037 Sum_probs=118.1
Q ss_pred CCCeeEEEEcC--CCCeEEEeeCC----eEEEEEccCCeEEEEecC--------------CCCCeEEEEEcCCC-CcEEE
Q 001163 843 EDAVPCFALSK--NDSYVMSASGG----KISLFNMMTFKTMTTFMP--------------PPPAATFLAFHPQD-NNIIA 901 (1134)
Q Consensus 843 ~~~v~~v~~s~--dg~~la~~sdg----~i~lwd~~~~~~~~~~~~--------------~~~~v~~l~~sp~~-~~~la 901 (1134)
...|.+|+++| ++.+.+.+..| .|...+ +.++.-..+.. ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 35689999998 66666665554 343332 22322222211 11247789998633 34555
Q ss_pred EEeCCCcEEEEEcccce---EEEeccC----------------ccCceEEEEEeeC-CCEEEEEeCCCcEEEEECCCCcc
Q 001163 902 IGMEDSSIQIYNVRVDE---VKTKLKG----------------HQKRITGLAFSNT-LNVLVSSGADSQLCVWSTDGWEK 961 (1134)
Q Consensus 902 ~g~~dg~i~iwd~~~~~---~~~~l~~----------------h~~~V~~l~~s~d-~~~l~s~s~Dg~i~iwd~~~~~~ 961 (1134)
+++..+.|...+ +.|+ .+..+.. ....|.+|.+.|. ...|+.+..++.|...+ +.++
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~- 209 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGT- 209 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTS-
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCC-
Confidence 555555554432 2222 2211111 1235788999873 34444454444444432 2222
Q ss_pred ccceeeeec-CC-CCC-----CCCCceEEEEcCC-CCEEEEEeeceEEEEeCCCcccceeecc-CCC--ccCEEEEEEcc
Q 001163 962 QASKFLTIP-NG-RTA-----SALADTRVQFHLD-QTHLLAVHETQIAIYEAPKLECLKQFVP-REA--SGPITHATYSC 1030 (1134)
Q Consensus 962 ~~~~~~~~~-~~-~~~-----~~~~v~~l~fs~d-g~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~h--~~~v~~~~~s~ 1030 (1134)
.+..+... .. ..+ ....+.++++.|+ ...|.++..+.|...+- .++....+.. ... ...+.++++.|
T Consensus 210 -tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p 287 (394)
T 3b7f_A 210 -DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQ 287 (394)
T ss_dssp -SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred -CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC-CCCcceECCCCCCCCCccceEEEEECC
Confidence 11111110 00 000 0124788999886 35566655555555442 2332222221 011 13456788876
Q ss_pred -CCCEEEEEec-----------CCcEEEeecCC-CcceeecCCCcccCCCCC-CCceeEEEEecCCCCCEEEEEecCCcE
Q 001163 1031 -DSQSIYVAFE-----------EGSVGVLTAST-LRLRCRINPTAYLPTNPS-LRVYPLVIAGNPTDPNQFALGLTDGGV 1096 (1134)
Q Consensus 1031 -dg~~l~s~s~-----------Dg~i~vwd~~~-~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~p~~~~~l~s~~~Dg~v 1096 (1134)
+...|..+.. ++...+|.... |+....+. .-+|.... ..+...+++++|.++..|+.++.++.|
T Consensus 288 ~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l 365 (394)
T 3b7f_A 288 RDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI 365 (394)
T ss_dssp SCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred CCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence 3344444432 23334554433 33333332 11222110 111112346677666667777766654
Q ss_pred EEEeCCCCCCCccCC
Q 001163 1097 YIIEPLEAEGRWGTS 1111 (1134)
Q Consensus 1097 ~vW~~~~~~~~~~~~ 1111 (1134)
|.-.+....|...
T Consensus 366 --~~S~D~G~tW~~~ 378 (394)
T 3b7f_A 366 --WASADEGEHWQCI 378 (394)
T ss_dssp --EEESSTTSBCEEE
T ss_pred --EEECCCCCCceEc
Confidence 4444455567653
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=90.52 E-value=26 Score=39.28 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=33.7
Q ss_pred ceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCC---ceeEEEec---C----CCCCCcceEEEcCC
Q 001163 600 SVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNV---NLLASIDA---D----GGLQASPCIRFNKE 653 (1134)
Q Consensus 600 ~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~---~~~~~~~~---~----~~~~~v~~v~~sp~ 653 (1134)
....++|.|++. .++++...|.|++++.... ..+..+.. . ........|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 456799999996 5666778899999975432 12232211 0 01234567888885
No 353
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.06 E-value=11 Score=45.26 Aligned_cols=196 Identities=14% Similarity=0.036 Sum_probs=101.1
Q ss_pred cCCCceEEEEEeCC----CeEEEEECCCCceeEEe-c-------CCCcCEEEEeccccCCccEEEEecCCC------cEE
Q 001163 473 YPNKQLSVVTCGED----RVIKVWDAVTGTKQYIF-E-------GHESPVYSICPHHKENIQFIFSTATDG------KIK 534 (1134)
Q Consensus 473 ~~~~~~~l~s~s~d----~~i~iwd~~~~~~~~~~-~-------~h~~~v~~~~~~~~~~~~~l~s~s~dg------~i~ 534 (1134)
.++. +++.||.+ ..+.++|..+++....- . .....-..+.+ ..++.+++.|+.++ .+.
T Consensus 396 ~~~~--iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~--~~~~~lyv~GG~~~~~~~~~dv~ 471 (695)
T 2zwa_A 396 AGND--VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTI--SRNNQLLLIGGRKAPHQGLSDNW 471 (695)
T ss_dssp CSSC--EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEE--TTTTEEEEECCBSSTTCBCCCCE
T ss_pred ECCE--EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEE--ccCCEEEEEcCCCCCCCccccEE
Confidence 3455 56666643 46788888877543322 1 11111112221 10446777776543 467
Q ss_pred EEecCCCCceeeecCCCCC-eeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEec---CC-CCCceEEEEEcCC
Q 001163 535 AWLYDNLGSRVDYDAPGHS-STMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH---GL-GKRSVGVVQFDTT 609 (1134)
Q Consensus 535 vwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~---~~-~~~~v~~~~~~~~ 609 (1134)
+||..+..-...-...... -.+++...+++.++.||.+... .+.+||..+.+....-. .. ......++.+..+
T Consensus 472 ~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 472 IFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp EEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred EEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 7777654322211111111 1233333488888888876544 69999999876544321 00 1112233555555
Q ss_pred -CCEEEEEeC--C-----CeEEEEEcCCCce-----eEEEecCCCCCCc-ceEEEcCCCcEEEEEEC--------CCcEE
Q 001163 610 -KNRFLAAGD--E-----FMIKFWDMDNVNL-----LASIDADGGLQAS-PCIRFNKEGILLAVSTN--------DNGIK 667 (1134)
Q Consensus 610 -~~~l~~~~~--d-----g~i~iwd~~~~~~-----~~~~~~~~~~~~v-~~v~~sp~~~~l~~~~~--------dg~i~ 667 (1134)
+..++.||. + ..+.+||+.+... ...+......... .+++...++.+++.|+. ...+.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 556666664 2 4689999988872 2222210001111 12333333777777774 34588
Q ss_pred EEEccCC
Q 001163 668 ILANADG 674 (1134)
Q Consensus 668 iw~~~~~ 674 (1134)
+||+.+.
T Consensus 630 ~yd~~t~ 636 (695)
T 2zwa_A 630 SLDPLSE 636 (695)
T ss_dssp EEETTTT
T ss_pred EEECCCC
Confidence 8888765
No 354
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=89.51 E-value=19 Score=37.29 Aligned_cols=184 Identities=11% Similarity=0.039 Sum_probs=97.8
Q ss_pred CeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEecc
Q 001163 845 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK 924 (1134)
Q Consensus 845 ~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~ 924 (1134)
.|..++...+-..++ .||.|+.|-....-.+.........|..++... ...+.-. ||.|+.|-....-.+....
T Consensus 64 ~i~~ia~G~~hs~~l--~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL--KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEEEEE--ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEEEEE--ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 456666554433333 378888886543221111111134688887764 3444445 9999999765421111111
Q ss_pred CccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEe
Q 001163 925 GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYE 1004 (1134)
Q Consensus 925 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd 1004 (1134)
.....|..++...+. .++ -. ||.|..|-........ .+.. ....+..++...+... +. .+|.|+.|-
T Consensus 138 ~~~~~i~~i~~G~~~-~~~-l~-~G~v~~wG~n~~gqlg-----~p~~---~~~~v~~i~~G~~hs~-al-~~G~v~~wG 204 (282)
T 3qhy_B 138 EAQSGVTALDGGVYT-ALA-VK-NGGVIAWGDNYFGQTT-----VPAE---AQSGVDDVAGGIFHSL-AL-KDGKVIAWG 204 (282)
T ss_dssp GGGSSEEEEEECSSE-EEE-EE-TTEEEEEECCTTSTTS-----CCGG---GGSSEEEEEECSSEEE-EE-ETTEEEEEE
T ss_pred cCCCCeEEEEcccCE-EEE-EE-CCEEEEecCCCCCCCC-----Ccee---cCCCeEEEEecCCEEE-EE-ECCeEEEEE
Confidence 123457777665333 233 33 7999999765432211 0000 0134666666555443 34 689999998
Q ss_pred CCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCC
Q 001163 1005 APKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTL 1052 (1134)
Q Consensus 1005 ~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~ 1052 (1134)
......+..-. .-...|..++...+...+++ ||.|..|=....
T Consensus 205 ~n~~gqlg~p~--~~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~~ 247 (282)
T 3qhy_B 205 DNRYKQTTVPT--EALSGVSAIASGEWYSLALK---NGKVIAWGSSRT 247 (282)
T ss_dssp CCTTSTTCCCG--GGGSSCCEEEECSSCEEEEE---TTEEEEESTTCC
T ss_pred CCCCCCCCCCc--ccCCCceEEEcCCCEEEEEE---CCEEEEecCCCC
Confidence 76543332221 11345777776544433333 899999986554
No 355
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=87.99 E-value=50 Score=39.26 Aligned_cols=243 Identities=9% Similarity=0.027 Sum_probs=122.6
Q ss_pred EEE-EcCCCCeEEEEEeCCC----cEEEEecCCccceeeeceeeeeccccCccccccccccCC-----CCEEEEEEcCCC
Q 001163 361 SMD-FHPVQQILLVVGTNMG----DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT-----ASVNRVMWSPDG 430 (1134)
Q Consensus 361 ~v~-fsp~g~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~l~~spd~ 430 (1134)
.+. ++|++++++++=|..| .|+++|+.+++.+.. .|. . .... .....++|-.++
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~--------------~~k~~~~~~~~~~~~~W~d~~ 196 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-P--------------ITNSGKLLEGKFTYPTWINKD 196 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-C--------------BCTTCCBCCEETCCEEEEETT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-c--------------ccccccccccccceeeEECCC
Confidence 455 8899997766544443 799999999976531 110 0 0000 011234676433
Q ss_pred CEEEEE----------eCCCEEEEEEccCCceeeeeeeeecCCCCE-EEEEEecCCCc---eEEEEEeCC---CeEEEEE
Q 001163 431 TLFGVA----------YSKHIVHLYTYHGGDELRNHLEIEAHVGSV-NDLAFSYPNKQ---LSVVTCGED---RVIKVWD 493 (1134)
Q Consensus 431 ~~las~----------s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V-~~v~~s~~~~~---~~l~s~s~d---~~i~iwd 493 (1134)
.++++. +....|+.|.+-+...-. ...+.+....+ .....+++++. ..+++.+.+ ..+.+.|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 275 (711)
T 4hvt_A 197 TIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKA-KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILD 275 (711)
T ss_dssp EEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGC-EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEE
T ss_pred EEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHC-eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEc
Confidence 333331 123468888887653211 11344433333 33455667663 135554422 4566667
Q ss_pred CCC--CceeEEecCCCcCEEEEeccccCCccEEEEe----------cCCCcEEEEecCCCC-------ceee-ecC-CCC
Q 001163 494 AVT--GTKQYIFEGHESPVYSICPHHKENIQFIFST----------ATDGKIKAWLYDNLG-------SRVD-YDA-PGH 552 (1134)
Q Consensus 494 ~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------s~dg~i~vwd~~~~~-------~~~~-~~~-~~~ 552 (1134)
... ++...........+ +. + .++.+++.. ...+.|...++.... .... +.. ...
T Consensus 276 ~~~~~~~~~~l~~~~~~~~--~~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (711)
T 4hvt_A 276 TKYKNLKLQKINMPSDATL--QG-S--FKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANE 350 (711)
T ss_dssp CSSSSCEEEECCSCTTCEE--EE-E--ETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTE
T ss_pred CCCCCCcceEeecCCcceE--ee-e--ECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCC
Confidence 553 43222222112111 11 1 122444422 145778888887631 1112 322 233
Q ss_pred CeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe-eEEE-ecCCCCCceEEEEEcCCCCEE-EEEe---CCCeEEEEE
Q 001163 553 SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA-VKRT-YHGLGKRSVGVVQFDTTKNRF-LAAG---DEFMIKFWD 626 (1134)
Q Consensus 553 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l-~~~~---~dg~i~iwd 626 (1134)
.+..+.+..+ ..+++... ++...+.++|+.++. .... +.......+......+++..+ ++.+ .-+.++.+|
T Consensus 351 ~l~~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d 427 (711)
T 4hvt_A 351 VFNFISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWV 427 (711)
T ss_dssp EEEEEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred eEEEEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEe
Confidence 6778888876 44444433 446678999987764 2222 322222256656666766544 4433 346788888
Q ss_pred cC
Q 001163 627 MD 628 (1134)
Q Consensus 627 ~~ 628 (1134)
..
T Consensus 428 ~~ 429 (711)
T 4hvt_A 428 KT 429 (711)
T ss_dssp TT
T ss_pred CC
Confidence 76
No 356
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=87.27 E-value=29 Score=35.67 Aligned_cols=194 Identities=9% Similarity=0.085 Sum_probs=106.7
Q ss_pred cEEEEEeCCCcEEE---EEcccceEEEeccCccCceEEEEEee--CCCEEEEEeCCCcEEEEECCCCc--cccceeeeec
Q 001163 898 NIIAIGMEDSSIQI---YNVRVDEVKTKLKGHQKRITGLAFSN--TLNVLVSSGADSQLCVWSTDGWE--KQASKFLTIP 970 (1134)
Q Consensus 898 ~~la~g~~dg~i~i---wd~~~~~~~~~l~~h~~~V~~l~~s~--d~~~l~s~s~Dg~i~iwd~~~~~--~~~~~~~~~~ 970 (1134)
..|+.-++.|.++- |++..+.....+. ....|.++.. + +..+++..+.+|.++-..+..-. ......+...
T Consensus 36 ~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk 113 (276)
T 3no0_A 36 EGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT 113 (276)
T ss_dssp SCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC
T ss_pred CEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC
Confidence 34555566665554 3333322111133 3456766644 4 46799999999999999876532 1111122222
Q ss_pred CCCCCCCCCceEEEEcCCC-CEEEEEeeceEEEEeCCCccc-------ceeeccCCCccCEEEEEEccCCCEEEEEecCC
Q 001163 971 NGRTASALADTRVQFHLDQ-THLLAVHETQIAIYEAPKLEC-------LKQFVPREASGPITHATYSCDSQSIYVAFEEG 1042 (1134)
Q Consensus 971 ~~~~~~~~~v~~l~fs~dg-~~l~~~~d~~i~iwd~~~~~~-------~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg 1042 (1134)
++ +.+..+....+. ..++.+..|.+..+....-.. +..+.... ...|.++...+++.+|+..+..|
T Consensus 114 eg-----D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G 187 (276)
T 3no0_A 114 EG-----DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKG 187 (276)
T ss_dssp TT-----CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTS
T ss_pred CC-----CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCC
Confidence 22 345555544444 444457888887776542211 11122212 46677777667778899999999
Q ss_pred cEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEE--EeCCC
Q 001163 1043 SVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYI--IEPLE 1103 (1134)
Q Consensus 1043 ~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~v--W~~~~ 1103 (1134)
.++...+..-....+-....... .-.+.+..+.+. ++.+.++..+.+|.+.. +++.+
T Consensus 188 ~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~---~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 188 RVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPI---KEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp CEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEE---SSEEEEEEEETTSCEEEEEEEGGG
T ss_pred cEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEe---CCCCEEEEEcCCCeEEEeeeCHHH
Confidence 99988876544433321110000 112444444322 23457888888898887 77654
No 357
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=86.69 E-value=27 Score=41.55 Aligned_cols=243 Identities=11% Similarity=0.072 Sum_probs=119.0
Q ss_pred EEEE-EcCCCCEEEEE-eC----CCEEEEEEccCCceeeeeeeee-cCCC------CEEEEEEecCCCceEEEEEe----
Q 001163 422 NRVM-WSPDGTLFGVA-YS----KHIVHLYTYHGGDELRNHLEIE-AHVG------SVNDLAFSYPNKQLSVVTCG---- 484 (1134)
Q Consensus 422 ~~l~-~spd~~~las~-s~----dg~v~iwd~~~~~~~~~~~~l~-~h~~------~V~~v~~s~~~~~~~l~s~s---- 484 (1134)
..+. ++||+++++.+ |. ...++++|+.+++.+... +. .-+. ....++|..++. ++++..
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~--~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~ 207 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNG--FEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKN 207 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTC--SCCBCTTCCBCCEETCCEEEEETTE--EEECCCCSTT
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCC--cccccccccccccccceeeEECCCE--EEEEeCCCCC
Confidence 3444 88999988775 22 236999999998765321 21 0000 124458874444 444321
Q ss_pred ------CCCeEEEEECCCCc--eeEEecCCCcCEE-EEeccccCCcc---EEEEecCC---CcEEEEecCCCCce-eeec
Q 001163 485 ------EDRVIKVWDAVTGT--KQYIFEGHESPVY-SICPHHKENIQ---FIFSTATD---GKIKAWLYDNLGSR-VDYD 548 (1134)
Q Consensus 485 ------~d~~i~iwd~~~~~--~~~~~~~h~~~v~-~~~~~~~~~~~---~l~s~s~d---g~i~vwd~~~~~~~-~~~~ 548 (1134)
....|+.|.+-+.. -...+.+....+. +...+.++... .+++.+.+ ..+.+.+....... ..+.
T Consensus 208 ~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 287 (711)
T 4hvt_A 208 EITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKIN 287 (711)
T ss_dssp CBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECC
T ss_pred CcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEee
Confidence 22468888765542 2233444333332 22223333222 34444322 33555555432222 2332
Q ss_pred CCCCCeeEEEECcCCCEEEEEecCC------CCCeEEEEEeCCCCe--------eEEEecCCCCCceEEEEEcCCCCEEE
Q 001163 549 APGHSSTMMAYSADGARLFSCGTNK------EGESYLVEWNESEGA--------VKRTYHGLGKRSVGVVQFDTTKNRFL 614 (1134)
Q Consensus 549 ~~~~~v~~~~~s~~~~~l~~~~~~~------~~~~~i~~wd~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~ 614 (1134)
.... ..+..+.++..++....+. -....|...|+.++. ....+.......+..+.+..+ ..++
T Consensus 288 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~ 364 (711)
T 4hvt_A 288 MPSD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFL 364 (711)
T ss_dssp SCTT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEE
T ss_pred cCCc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEE
Confidence 2222 1223445565555332110 124458888876642 122244444446777888765 5666
Q ss_pred EEeCCCe--EEEEEcCCCc-eeEE-EecCCCCCCcceEEEcCCCc-EEEEEEC---CCcEEEEEcc
Q 001163 615 AAGDEFM--IKFWDMDNVN-LLAS-IDADGGLQASPCIRFNKEGI-LLAVSTN---DNGIKILANA 672 (1134)
Q Consensus 615 ~~~~dg~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~v~~sp~~~-~l~~~~~---dg~i~iw~~~ 672 (1134)
+...++. |+++++.+++ .... +.... ...+.....++++. ++++.+. -+.+..++..
T Consensus 365 ~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 365 ATYDNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 6666664 6777776664 2333 33221 12455555666654 4444332 2556666654
No 358
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=82.43 E-value=71 Score=36.11 Aligned_cols=235 Identities=12% Similarity=0.107 Sum_probs=131.8
Q ss_pred EEEEeCCCEEEEEEccCCceeeeeeeeecC----------------------CCCEE--EEEEe---cCCCceEEEEEe-
Q 001163 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAH----------------------VGSVN--DLAFS---YPNKQLSVVTCG- 484 (1134)
Q Consensus 433 las~s~dg~v~iwd~~~~~~~~~~~~l~~h----------------------~~~V~--~v~~s---~~~~~~~l~s~s- 484 (1134)
+.||+..|.|+|+-+.+++.++.+..+..- .+... .+.+. .||+ +|+.-.
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGr--ylfiNdk 150 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGK--YLFINDK 150 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEE--EEEEEET
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeE--EEEEecC
Confidence 557888999999999998877754332210 01111 23332 2566 444444
Q ss_pred CCCeEEEEECCCCceeEEec-CCCcCEEEEeccccCCccEEEEecCC-------CcE---------EE---EecCCCCce
Q 001163 485 EDRVIKVWDAVTGTKQYIFE-GHESPVYSICPHHKENIQFIFSTATD-------GKI---------KA---WLYDNLGSR 544 (1134)
Q Consensus 485 ~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d-------g~i---------~v---wd~~~~~~~ 544 (1134)
.+..|..-+++.-++-+.+. .....+.++++...++..+++.+++. |.. .+ .|.++.+..
T Consensus 151 an~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~ 230 (638)
T 3sbq_A 151 ANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMA 230 (638)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEE
T ss_pred CCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEE
Confidence 56678888888877765443 24556777777533455677776542 221 11 122222211
Q ss_pred eeecCCCCCeeEEEECcCCCEEEEEecCCC-----------CCeEEEEEeCCC-------Ce-------eEEEecCCC--
Q 001163 545 VDYDAPGHSSTMMAYSADGARLFSCGTNKE-----------GESYLVEWNESE-------GA-------VKRTYHGLG-- 597 (1134)
Q Consensus 545 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-----------~~~~i~~wd~~~-------~~-------~~~~~~~~~-- 597 (1134)
..+.. .+....+...++|++.++.+.+.+ ....+.++|... |+ -+..+.+..
T Consensus 231 ~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~ 309 (638)
T 3sbq_A 231 FQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKD 309 (638)
T ss_dssp EEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBT
T ss_pred EEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccc
Confidence 11111 112334556788888887763321 123344554320 00 011222211
Q ss_pred --C----------CceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCC------ce-------eEEEecCCCCCCcceEEEc
Q 001163 598 --K----------RSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNV------NL-------LASIDADGGLQASPCIRFN 651 (1134)
Q Consensus 598 --~----------~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~------~~-------~~~~~~~~~~~~v~~v~~s 651 (1134)
. .....+.++|||+++++++ .+.++.++|+++. +. ..... -+. .....+|.
T Consensus 310 ~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--~Gl-GPlHt~Fd 386 (638)
T 3sbq_A 310 GKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--LGL-GPLHTTFD 386 (638)
T ss_dssp TBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--CCS-CEEEEEEC
T ss_pred ccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--CCC-cccEEEEC
Confidence 0 1334578999999999988 7889999998742 11 11222 112 34678999
Q ss_pred CCCcEEEEEECCCcEEEEEccC
Q 001163 652 KEGILLAVSTNDNGIKILANAD 673 (1134)
Q Consensus 652 p~~~~l~~~~~dg~i~iw~~~~ 673 (1134)
++|....+.--|..|.-|++..
T Consensus 387 ~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 387 GRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp SSSEEEEEETTTTEEEEEEHHH
T ss_pred CCCceEeeeeecceEEEEeccH
Confidence 9996666666899999999865
No 359
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=81.89 E-value=2.8 Score=38.83 Aligned_cols=64 Identities=19% Similarity=0.289 Sum_probs=46.2
Q ss_pred ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccccccc
Q 001163 67 RYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQLS 131 (1134)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 131 (1134)
++.+ ++|.|+-+.||||+..|..++|..|+++--.-+.....+.+++|..+.......+++...
T Consensus 48 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~ 111 (156)
T 2nxp_A 48 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETML 111 (156)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGG
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHH
Confidence 3444 999999999999999999999999998533333333457778887776655555444433
No 360
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=81.01 E-value=65 Score=34.69 Aligned_cols=185 Identities=10% Similarity=0.069 Sum_probs=99.0
Q ss_pred EEEEEEccCC--ceeeeeeeeec----CCCCEEEEEEe---cC---CCceEEEEEeCCCeEEEEECCCCceeEEecCCCc
Q 001163 441 IVHLYTYHGG--DELRNHLEIEA----HVGSVNDLAFS---YP---NKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES 508 (1134)
Q Consensus 441 ~v~iwd~~~~--~~~~~~~~l~~----h~~~V~~v~~s---~~---~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 508 (1134)
.|.+||+.++ +.++.. .+.. ....+..+++. ++ +.....++=+...-|.|+|+.+++.-+.+ |.
T Consensus 124 kLv~~DL~t~~~~li~~y-~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~--~~- 199 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRY-YFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT--HP- 199 (381)
T ss_dssp EEEEEESSSTTCCEEEEE-ECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE--CG-
T ss_pred eEEEEECCCCCceeEEEE-ECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc--cC-
Confidence 5788888888 766543 2321 23457888887 22 13324555556789999999999877655 32
Q ss_pred CEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcC----CCEEEEEecCCCCCeEEEEEeC
Q 001163 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD----GARLFSCGTNKEGESYLVEWNE 584 (1134)
Q Consensus 509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~wd~ 584 (1134)
.+.++..+ .+.. +|.-..| ...+..++++|+ ++.|......+ -++|.+
T Consensus 200 -----~~~pd~~~-~~~i---~G~~~~~--------------~~Gi~gIaLsp~~~~~~~~LYf~plss-----~~ly~V 251 (381)
T 3q6k_A 200 -----TFKAERPT-KFDY---GGKEYEF--------------KAGIFGITLGDRDSEGNRPAYYLAGSA-----IKVYSV 251 (381)
T ss_dssp -----GGSCCSCE-EEEE---TTEEEEE--------------CCCEEEEEECCCCTTSCCEEEEEESSC-----SEEEEE
T ss_pred -----CCccccCc-ceEE---CCEEeEe--------------ccCceEEEecCCcCCCCeEEEEEECCC-----CcEEEE
Confidence 12333211 1111 2222222 235788999998 78887776543 223322
Q ss_pred C-----CC---eeEEEecCCCC--CceEEEEEc-CCCCEEEEEeCCCeEEEEEcCC-C---ceeEEEecCCCCCCcceEE
Q 001163 585 S-----EG---AVKRTYHGLGK--RSVGVVQFD-TTKNRFLAAGDEFMIKFWDMDN-V---NLLASIDADGGLQASPCIR 649 (1134)
Q Consensus 585 ~-----~~---~~~~~~~~~~~--~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~v~ 649 (1134)
. .. ..++.+ +... ..-...++. .+|..+++--+...|..|+..+ . +....+...........+.
T Consensus 252 ~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~ 330 (381)
T 3q6k_A 252 NTKELKQKGGKLNPELL-GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDIS 330 (381)
T ss_dssp EHHHHSSTTCCCCCEEE-EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEE
T ss_pred EHHHhhCcchhhceEEe-eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEE
Confidence 2 11 112211 1111 123345665 5565566666889999999875 1 2223333222233445565
Q ss_pred EcCCCcEEE
Q 001163 650 FNKEGILLA 658 (1134)
Q Consensus 650 ~sp~~~~l~ 658 (1134)
+.++|.+.+
T Consensus 331 i~~~g~Lwv 339 (381)
T 3q6k_A 331 VDSKGGLWF 339 (381)
T ss_dssp ECTTSCEEE
T ss_pred ECCCCeEEE
Confidence 555554333
No 361
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=80.82 E-value=66 Score=34.64 Aligned_cols=156 Identities=10% Similarity=0.093 Sum_probs=88.6
Q ss_pred CeEEEEEccCC--eEEEEecCC------CCCeEEEEEc---CC--C-CcEEEEEe-CCCcEEEEEcccceEEEeccCccC
Q 001163 864 GKISLFNMMTF--KTMTTFMPP------PPAATFLAFH---PQ--D-NNIIAIGM-EDSSIQIYNVRVDEVKTKLKGHQK 928 (1134)
Q Consensus 864 g~i~lwd~~~~--~~~~~~~~~------~~~v~~l~~s---p~--~-~~~la~g~-~dg~i~iwd~~~~~~~~~l~~h~~ 928 (1134)
-+|.+||+.+. +.++++.-. ......+++. |. + +.++.... ..+.|.|+|+.+++.-+.+ |..
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~--~~~ 200 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT--HPT 200 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE--CGG
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc--cCC
Confidence 35678888888 888776532 2347778877 21 1 33444443 4678999999998876655 321
Q ss_pred ceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCC----CCEEEEEeeceEEEEe
Q 001163 929 RITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD----QTHLLAVHETQIAIYE 1004 (1134)
Q Consensus 929 ~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d----g~~l~~~~d~~i~iwd 1004 (1134)
|.|+.....+. +|.-.-| . .++..+++||+ ++.|.-+.=..-++|.
T Consensus 201 ------~~pd~~~~~~i--~G~~~~~---------------~-------~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~ 250 (381)
T 3q6k_A 201 ------FKAERPTKFDY--GGKEYEF---------------K-------AGIFGITLGDRDSEGNRPAYYLAGSAIKVYS 250 (381)
T ss_dssp ------GSCCSCEEEEE--TTEEEEE---------------C-------CCEEEEEECCCCTTSCCEEEEEESSCSEEEE
T ss_pred ------CccccCcceEE--CCEEeEe---------------c-------cCceEEEecCCcCCCCeEEEEEECCCCcEEE
Confidence 33441111111 2221111 1 34788999998 7888775333334444
Q ss_pred CCCc-----c---cceeeccCCCccCEEEEEEc-cCCCEEEEEecCCcEEEeecCC
Q 001163 1005 APKL-----E---CLKQFVPREASGPITHATYS-CDSQSIYVAFEEGSVGVLTAST 1051 (1134)
Q Consensus 1005 ~~~~-----~---~~~~~~~~~h~~~v~~~~~s-~dg~~l~s~s~Dg~i~vwd~~~ 1051 (1134)
+.+. . .+..+-..+-...-..+++. .+|.++++--..+.|..|+..+
T Consensus 251 V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 251 VNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 4321 1 11111111111333456675 6788788888889999999875
No 362
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=79.30 E-value=1.4 Score=39.70 Aligned_cols=58 Identities=10% Similarity=0.201 Sum_probs=41.9
Q ss_pred ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhccccccc
Q 001163 67 RYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRD 126 (1134)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~ 126 (1134)
++.+ ++|.|+-+.||||+..|..++|..|+.+--.-+... .+.+++|..+.......+
T Consensus 29 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~ 86 (138)
T 2j4b_A 29 DLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHE 86 (138)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhh
Confidence 4444 999999999999999999999999998643333334 677777776665544443
No 363
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=76.63 E-value=1.5 Score=40.03 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=27.6
Q ss_pred ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 001163 67 RYSMKIFFEIRKQKYLEALDKRDRAKAVEILVK 99 (1134)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~ 99 (1134)
++.+ ++|.|+-+.||||+..| .++|..|+.+
T Consensus 31 EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~ 61 (148)
T 2j49_A 31 ELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDR 61 (148)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHH
Confidence 4444 99999999999999999 9999999984
No 364
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=75.55 E-value=96 Score=33.64 Aligned_cols=204 Identities=9% Similarity=0.005 Sum_probs=103.8
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEEccc-c----------eEEEeccCc-cCceEEEEEeeCCCEEEEEeCCCcEEE
Q 001163 886 AATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-D----------EVKTKLKGH-QKRITGLAFSNTLNVLVSSGADSQLCV 953 (1134)
Q Consensus 886 ~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~-~----------~~~~~l~~h-~~~V~~l~~s~d~~~l~s~s~Dg~i~i 953 (1134)
.+..++++. +....+.-+.||.|+.|-... + .....+..- ...|..++.. ..+.+....||.|+.
T Consensus 106 ~~~~v~i~~-G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~ 182 (389)
T 3kci_A 106 FIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYT 182 (389)
T ss_dssp CEEEEEECT-TCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred ceeEEEECc-CCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEE
Confidence 456677777 677777778899999996532 1 111122211 2256666554 445555667999999
Q ss_pred EECCCCccc------c-ceeeeecCCCCCCCCCceEEEEcC-CCCEEEEEeeceEEEEeCCCccccee----------ec
Q 001163 954 WSTDGWEKQ------A-SKFLTIPNGRTASALADTRVQFHL-DQTHLLAVHETQIAIYEAPKLECLKQ----------FV 1015 (1134)
Q Consensus 954 wd~~~~~~~------~-~~~~~~~~~~~~~~~~v~~l~fs~-dg~~l~~~~d~~i~iwd~~~~~~~~~----------~~ 1015 (1134)
|-....-.. . .....+... ....+..++... +...++...+++|+.|-......+.. ..
T Consensus 183 wG~n~~GqLG~~~~~~~~~p~~v~~~---~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v 259 (389)
T 3kci_A 183 WGKGRYGRLGHSDSEDQLKPKLVEAL---QGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKI 259 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGG---TTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEEC
T ss_pred eCCCCCCCcCCCCCcccccceEeccc---CCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEe
Confidence 975431110 0 011111110 012356666654 34455667889999997654322110 00
Q ss_pred cCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeec-----CCCcccCCCCCCCceeEEEEecCCCCCEEEEE
Q 001163 1016 PREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRI-----NPTAYLPTNPSLRVYPLVIAGNPTDPNQFALG 1090 (1134)
Q Consensus 1016 ~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~ 1090 (1134)
..-....|..++.. ..+.+....||.|..|=....-.+..- ..+..+..-....|..++. .....+..
T Consensus 260 ~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~-----G~~h~~al 332 (389)
T 3kci_A 260 DSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT-----GSLHCVCC 332 (389)
T ss_dssp GGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE-----CSSEEEEE
T ss_pred cccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe-----ccCeEEEE
Confidence 00012246665554 334444567899999975432111000 0000000001123444432 34566677
Q ss_pred ecCCcEEEEeCC
Q 001163 1091 LTDGGVYIIEPL 1102 (1134)
Q Consensus 1091 ~~Dg~v~vW~~~ 1102 (1134)
..||.|+.|=-.
T Consensus 333 ~~~G~v~~wG~n 344 (389)
T 3kci_A 333 TEDGEVYTWGDN 344 (389)
T ss_dssp ETTCCEEEEECC
T ss_pred CCCCCEEEeeCC
Confidence 899999999764
No 365
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=71.99 E-value=1e+02 Score=32.40 Aligned_cols=158 Identities=8% Similarity=0.046 Sum_probs=91.2
Q ss_pred CCCeeEE-EEcC--CCCeEEEee-CCeEEEEEccCCeEE-------EEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 001163 843 EDAVPCF-ALSK--NDSYVMSAS-GGKISLFNMMTFKTM-------TTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQI 911 (1134)
Q Consensus 843 ~~~v~~v-~~s~--dg~~la~~s-dg~i~lwd~~~~~~~-------~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~i 911 (1134)
...|..+ .+.. +..+++..+ +|.++--.+...... ..++. ...+..+.... +...|+..+..|.+..
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIR 171 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEE
Confidence 4455554 4432 467777777 899998887553321 12332 34455555554 4567888888998888
Q ss_pred EEcc--c---------ceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCcccc-----ceeeeecCCCCC
Q 001163 912 YNVR--V---------DEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQA-----SKFLTIPNGRTA 975 (1134)
Q Consensus 912 wd~~--~---------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~ 975 (1134)
+.+. . |...-.+. ....|.++...+++..|+..+..|.++.-.+..-.... ...+......
T Consensus 172 f~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~-- 248 (327)
T 3uc1_A 172 FSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRR-- 248 (327)
T ss_dssp EECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTT--
T ss_pred EECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCC--
Confidence 8776 2 11112232 34567777776677789999999999988876533211 1112211101
Q ss_pred CCCCceEEEE-cCCCCEEEEEeeceEEEEeCCC
Q 001163 976 SALADTRVQF-HLDQTHLLAVHETQIAIYEAPK 1007 (1134)
Q Consensus 976 ~~~~v~~l~f-s~dg~~l~~~~d~~i~iwd~~~ 1007 (1134)
+.+..+.. ..+...++++.+|.+.-++...
T Consensus 249 --d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 249 --GRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp --CSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred --CeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 22333333 3444555557788877777653
No 366
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.93 E-value=1.6e+02 Score=36.53 Aligned_cols=37 Identities=19% Similarity=0.139 Sum_probs=32.2
Q ss_pred CEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe
Q 001163 465 SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF 503 (1134)
Q Consensus 465 ~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 503 (1134)
.+.+++..++.. +++|-+.|+++|+|++.+++++.+.
T Consensus 237 ~~~~~~~~~~~~--~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYN--VLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTT--EEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCc--EEEEEECCCEEEEEECCCCCeEeee
Confidence 467778877777 8999999999999999999998865
No 367
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=71.76 E-value=1e+02 Score=32.36 Aligned_cols=166 Identities=12% Similarity=0.073 Sum_probs=96.1
Q ss_pred CCCeEEEEEcCC--CCcEEEEEeCCCcEEEEEcccce-------EEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEE
Q 001163 884 PPAATFLAFHPQ--DNNIIAIGMEDSSIQIYNVRVDE-------VKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 954 (1134)
Q Consensus 884 ~~~v~~l~~sp~--~~~~la~g~~dg~i~iwd~~~~~-------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iw 954 (1134)
...|.++..-++ +..+++..+.+|.++--.+..-. ....++. .+.+..+........|+..+..|.+..+
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRF 172 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEE
Confidence 345665544431 46799999999999999876532 2223443 3556666666666778888889998888
Q ss_pred ECC--CC----cc-ccceeeeecCCCCCCCCCceEEEEcCCCCEEE-EEeeceEEEEeCCCcccc-------eeeccCCC
Q 001163 955 STD--GW----EK-QASKFLTIPNGRTASALADTRVQFHLDQTHLL-AVHETQIAIYEAPKLECL-------KQFVPREA 1019 (1134)
Q Consensus 955 d~~--~~----~~-~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~-~~~d~~i~iwd~~~~~~~-------~~~~~~~h 1019 (1134)
... .- +. .....+.+..+ ..|.++...+++.+|+ ++..|.++.-.+...... ..+....-
T Consensus 173 ~~~~~eip~~gr~a~Gv~~i~L~~~-----d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~ 247 (327)
T 3uc1_A 173 SATDEALRPMGRATSGVQGMRFNID-----DRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR 247 (327)
T ss_dssp ECCTTTSCCCCTTSBCEESSCCCTT-----CCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTT
T ss_pred ECcccccCcCCcCCCCeeeecCCCC-----CEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCC
Confidence 876 21 11 11112222222 3466665555554444 477788887776533221 11211111
Q ss_pred ccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcce
Q 001163 1020 SGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLR 1055 (1134)
Q Consensus 1020 ~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~ 1055 (1134)
.+.+..+....+...++..+.+|.+.-++...-...
T Consensus 248 ~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~ 283 (327)
T 3uc1_A 248 RGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKA 283 (327)
T ss_dssp TCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBC
T ss_pred CCeEEEEEEeCCCccEEEEcCCCeEEEEehhhcccc
Confidence 344555555555566777778888888887654443
No 368
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=70.42 E-value=1.2e+02 Score=32.70 Aligned_cols=235 Identities=9% Similarity=0.017 Sum_probs=105.4
Q ss_pred CCEEEEEEcC--CCCEEEEEeCCC----EEEEEEccCCceeeeeee---eec--------CCCCEEEEEEecC--CCceE
Q 001163 419 ASVNRVMWSP--DGTLFGVAYSKH----IVHLYTYHGGDELRNHLE---IEA--------HVGSVNDLAFSYP--NKQLS 479 (1134)
Q Consensus 419 ~~V~~l~~sp--d~~~las~s~dg----~v~iwd~~~~~~~~~~~~---l~~--------h~~~V~~v~~s~~--~~~~~ 479 (1134)
..|.+|++.| ++.+.|.+ ..| .|.. ....|+....... +.. +...|.++++.|. .. .
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~-s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~--~ 130 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAA-RTGHLGPTVFR-SDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG--T 130 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEE-EC--CCEEEEE-ESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT--C
T ss_pred CceEEEEECCCCCCeEEEEe-cCCCCCccEEE-eCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC--E
Confidence 5799999999 45555544 333 2332 2233332222111 111 1135788999873 33 2
Q ss_pred EEEEeCCCeEEEEECCCCceeEEecC-------------------CCcCEEEEeccccCCccEEEEecCCCcEEEEecCC
Q 001163 480 VVTCGEDRVIKVWDAVTGTKQYIFEG-------------------HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540 (1134)
Q Consensus 480 l~s~s~d~~i~iwd~~~~~~~~~~~~-------------------h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 540 (1134)
+..+...+.|...+ +.|+.-..+.. ....+.+|.+++...+. ++.+..++.|... ..
T Consensus 131 l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~-l~vg~~~ggl~~s--~D 206 (394)
T 3b7f_A 131 WYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKH-LYIGMSSGGVFES--TD 206 (394)
T ss_dssp EEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTC-EEEEEETBEEEEE--SS
T ss_pred EEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCE-EEEEECCCCEEEE--CC
Confidence 45555555555443 33332222210 12357788876543333 4444333433332 32
Q ss_pred CCceeeecCC--------------CCCeeEEEECcC-CCEEEEEecCCCCCeEEEEEeCCCCeeEEEecC-CCC---Cce
Q 001163 541 LGSRVDYDAP--------------GHSSTMMAYSAD-GARLFSCGTNKEGESYLVEWNESEGAVKRTYHG-LGK---RSV 601 (1134)
Q Consensus 541 ~~~~~~~~~~--------------~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~-~~~---~~v 601 (1134)
.......... ...+..+.+.|+ ...+..+... -|...+-. ++.-..+.. ... ..+
T Consensus 207 gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~-----gl~~s~D~-G~tW~~~~~~l~~~~~~~~ 280 (394)
T 3b7f_A 207 AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHC-----GIYRMDRR-EGVWKRIGDAMPREVGDIG 280 (394)
T ss_dssp TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETT-----EEEEEETT-TTEEECGGGGSCTTTCSCE
T ss_pred CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCC-----eEEEeCCC-CCcceECCCCCCCCCccce
Confidence 2222211100 124788899886 3555555421 14444322 222222221 111 234
Q ss_pred EEEEEcCC-CCEEEEEeC-----------CCeEEEEEcCC-CceeEEEecC-CCCC-----CcceEEEcCC-CcEEEEEE
Q 001163 602 GVVQFDTT-KNRFLAAGD-----------EFMIKFWDMDN-VNLLASIDAD-GGLQ-----ASPCIRFNKE-GILLAVST 661 (1134)
Q Consensus 602 ~~~~~~~~-~~~l~~~~~-----------dg~i~iwd~~~-~~~~~~~~~~-~~~~-----~v~~v~~sp~-~~~l~~~~ 661 (1134)
..+.+.|. ...++++.. ++...+|.... |+....+... .... ....++++|. ...|+.++
T Consensus 281 ~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~ 360 (394)
T 3b7f_A 281 FPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGT 360 (394)
T ss_dssp EEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEEC
T ss_pred EEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEe
Confidence 56777763 344555432 23345555443 4444444210 0000 1236888874 34566666
Q ss_pred CCCcEE
Q 001163 662 NDNGIK 667 (1134)
Q Consensus 662 ~dg~i~ 667 (1134)
.++.|.
T Consensus 361 ~~g~l~ 366 (394)
T 3b7f_A 361 TGGEIW 366 (394)
T ss_dssp TTSCEE
T ss_pred CCCeEE
Confidence 555543
No 369
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=68.97 E-value=29 Score=36.13 Aligned_cols=111 Identities=14% Similarity=0.223 Sum_probs=61.0
Q ss_pred HHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccccccCHHHHHHHH
Q 001163 38 MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKD-LKVFSAFNEDLFKEIT 116 (1134)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~-l~~~~~~~~~~~~~l~ 116 (1134)
+.+|++.|.+|+|=||.+.+..+ +.-++.++++++|+.+|.+- +.-+++-+...--.|+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl--------------------~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTI--------------------ANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH--------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHH--------------------HHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHH
Confidence 67899999999999999977655 22233345555555555542 2222222334444555
Q ss_pred HHhcccccccccccccCCCChhHHHHHHHHHHhhcccCcCccccccCCCCchHHHHHHHHHHHHHHHhcCC
Q 001163 117 QLLTLENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLNWQHQLCK 187 (1134)
Q Consensus 117 ~ll~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~i~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~~~~ 187 (1134)
.++.- ..+.. ......+.+.+|. +|-+.+|++.. ...++++.|++|=...+.
T Consensus 77 ~llve-v~~~~----~~~~~~~~~~rl~-~l~~~~p~~~~-------------~r~~fi~~ai~WS~~~g~ 128 (312)
T 2wpv_A 77 FYLLE-VYDLA----EVKVDDISVARLV-RLIAELDPSEP-------------NLKDVITGMNNWSIKFSE 128 (312)
T ss_dssp HHHHH-HHHHT----TCCCSHHHHHHHH-HHHTTCCTTCT-------------THHHHHHHHHHHHHHTSS
T ss_pred HHHHH-HHHHc----CCCCCHHHHHHHH-HHHHHCCCCCc-------------hHHHHHHHHHHHHhhcCC
Confidence 55441 11110 1122344555555 44455555321 357888888888876543
No 370
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=64.35 E-value=1.4e+02 Score=31.19 Aligned_cols=203 Identities=9% Similarity=0.069 Sum_probs=103.6
Q ss_pred CCeeEEEE-cCCCCeEEEeeCCeEEEEEc---c------CCeEEEE-ecC-CCCCeEEEEEcCC--CCcEEEEEeCCCcE
Q 001163 844 DAVPCFAL-SKNDSYVMSASGGKISLFNM---M------TFKTMTT-FMP-PPPAATFLAFHPQ--DNNIIAIGMEDSSI 909 (1134)
Q Consensus 844 ~~v~~v~~-s~dg~~la~~sdg~i~lwd~---~------~~~~~~~-~~~-~~~~v~~l~~sp~--~~~~la~g~~dg~i 909 (1134)
..+..+.. +....+++..+.|.++-+.. . .|.++.. +.- ....|.++...++ ++.+++..+.+|.+
T Consensus 39 D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~i 118 (323)
T 1wp5_A 39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMV 118 (323)
T ss_dssp CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEE
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeE
Confidence 34444433 34444555555787555443 2 2232211 111 2334665543331 25678899999999
Q ss_pred EEEEcccc--------eEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCcc-----ccceeeeecCCCCCC
Q 001163 910 QIYNVRVD--------EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEK-----QASKFLTIPNGRTAS 976 (1134)
Q Consensus 910 ~iwd~~~~--------~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~ 976 (1134)
+-..+..- .....+... +.+..+........++..+.+|.+..+....-.. .....+.+..+
T Consensus 119 Krt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~---- 193 (323)
T 1wp5_A 119 KKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEG---- 193 (323)
T ss_dssp EEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTT----
T ss_pred EEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCC----
Confidence 99987532 222233322 5666666665667788888999988888754211 11122222222
Q ss_pred CCCceEEEEcCCCC--EEEEEeeceEEEEeCCCcc-------cceeec-cCCCccCEEEEEEccCCCEEEEEecCCcEEE
Q 001163 977 ALADTRVQFHLDQT--HLLAVHETQIAIYEAPKLE-------CLKQFV-PREASGPITHATYSCDSQSIYVAFEEGSVGV 1046 (1134)
Q Consensus 977 ~~~v~~l~fs~dg~--~l~~~~d~~i~iwd~~~~~-------~~~~~~-~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~v 1046 (1134)
+.+.++..-+++. .++++..|..+..++.... -+..+. .......+..+....++..++..+..|.+..
T Consensus 194 -d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir 272 (323)
T 1wp5_A 194 -DYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIET 272 (323)
T ss_dssp -CCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEE
T ss_pred -CEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEE
Confidence 3355554433343 4445677777766665321 111111 0011224554444344455666667777666
Q ss_pred eecCCC
Q 001163 1047 LTASTL 1052 (1134)
Q Consensus 1047 wd~~~~ 1052 (1134)
..+..-
T Consensus 273 ~~~~~i 278 (323)
T 1wp5_A 273 IKVGDI 278 (323)
T ss_dssp EEGGGS
T ss_pred EEhhhc
Confidence 666543
No 371
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=63.62 E-value=21 Score=44.41 Aligned_cols=39 Identities=15% Similarity=0.061 Sum_probs=34.0
Q ss_pred cCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecC
Q 001163 1021 GPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRIN 1059 (1134)
Q Consensus 1021 ~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~ 1059 (1134)
..+.+++..+|..++++.+.|+++|+|++.+++++....
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 466778888899999999999999999999999877654
No 372
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=59.65 E-value=39 Score=29.47 Aligned_cols=98 Identities=11% Similarity=0.070 Sum_probs=51.5
Q ss_pred HhhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHHHHHhcCC
Q 001163 15 FLDEEKFKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRD 89 (1134)
Q Consensus 15 ~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~ 89 (1134)
+++.--|.++...+++=-.+..+ ...=.-....|+|++|+..+.+...++... . ..+-..=.=+...|+
T Consensus 23 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~--~a~~~lg~~~~~~~~ 96 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF----I--KGYIRKAACLVAMRE 96 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----H--HHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh----h--HHHHHHHHHHHHCCC
Confidence 44444477777777664433322 111223455788888888877653333222 1 112222223445688
Q ss_pred HHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001163 90 RAKAVEILVKDLKVFSAFNEDLFKEITQLL 119 (1134)
Q Consensus 90 ~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1134)
.++|+..+++-|+ +.+.+++-...|..+|
T Consensus 97 ~~~A~~~~~~al~-l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 97 WSKAQRAYEDALQ-VDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHHH-HCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH-HCcCCHHHHHHHHHhc
Confidence 8888888887544 2223445555555443
No 373
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=59.00 E-value=55 Score=34.37 Aligned_cols=110 Identities=15% Similarity=0.226 Sum_probs=58.9
Q ss_pred HHHHHHHhhcccH---HHHHHHHcccCcccCCccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccccccCHHHHH
Q 001163 38 MRYFEDMVTNGEW---DEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKD-LKVFSAFNEDLFK 113 (1134)
Q Consensus 38 ~~~~~~~i~~g~w---~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~-l~~~~~~~~~~~~ 113 (1134)
+.+|++.|.+|+| =||.+.+..+ . .-++.++++.+|+.+|..- +.-++.-+...--
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi-----------~---------~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLV-----------A---------ARYSKQGNWAAAVDILASVSQTLLRSGQGGSGG 75 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH-----------H---------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHH-----------H---------HHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHH
Confidence 5789999999999 8888866544 1 2223445555555555542 2222222334444
Q ss_pred HHHHHhcccccccccccccCCCChhHHHHHHHHHHhhcccCcCccccccCCCCchHHHHHHHHHHHHHHHhcC
Q 001163 114 EITQLLTLENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLNWQHQLC 186 (1134)
Q Consensus 114 ~l~~ll~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~i~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~~~ 186 (1134)
.|+.++.- .... ..+....+.+.+|++-+ +.+||+. | ....++..|++|-....
T Consensus 76 DL~~llve-vy~~----~~~~~~~~~~~rL~~L~-~~~~~~~------------p-~r~~fi~~ai~WS~~~g 129 (336)
T 3lpz_A 76 DLAVLLVD-TFRQ----AGQRVDGASRGKLLGCL-RLFQPGE------------P-VRKRFVKEMIDWSKKFG 129 (336)
T ss_dssp HHHHHHHH-HHHH----HTCCCCHHHHHHHHHHH-TTSCTTC------------H-HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHH-HHHH----cCCCCCHHHHHHHHHHH-HhCCCCC------------c-HHHHHHHHHHHHHhhcC
Confidence 55555441 1111 11122344555655444 3455421 2 34778888888887644
No 374
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=57.65 E-value=1.7e+02 Score=29.81 Aligned_cols=197 Identities=5% Similarity=0.015 Sum_probs=109.2
Q ss_pred EEEEcCCCCeEEEeeCCeEE---EEEccCCeEEEEecCCCCCeEEEEEcCC-CCcEEEEEeCCCcEEEEEcccc------
Q 001163 848 CFALSKNDSYVMSASGGKIS---LFNMMTFKTMTTFMPPPPAATFLAFHPQ-DNNIIAIGMEDSSIQIYNVRVD------ 917 (1134)
Q Consensus 848 ~v~~s~dg~~la~~sdg~i~---lwd~~~~~~~~~~~~~~~~v~~l~~sp~-~~~~la~g~~dg~i~iwd~~~~------ 917 (1134)
.+..+....+++..+.|.++ +|++..++....+. ....|..+.. ++ +..+++..+.+|.++-..+..-
T Consensus 29 ~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G 106 (276)
T 3no0_A 29 ILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQG 106 (276)
T ss_dssp EEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTT
T ss_pred EEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCC
Confidence 33444444555666677654 34444332111132 4556766654 42 3568999999999999987653
Q ss_pred eEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCcc-----ccceeeeecCCCCCCCCCceEEEEcCCCCEE
Q 001163 918 EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEK-----QASKFLTIPNGRTASALADTRVQFHLDQTHL 992 (1134)
Q Consensus 918 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l 992 (1134)
.....++. .+.+..+........++..+..|.+..+....-.. .....+.+..+ +.+..+...+++..+
T Consensus 107 ~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~-----d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 107 MPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKN-----DETSGLRIWNGEPYL 180 (276)
T ss_dssp EECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT-----CCEEEEEEESSCSEE
T ss_pred eEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCC-----CEEEEEEEeCCCCEE
Confidence 22222332 34566666655666888888999888887643211 11122222222 345555544444444
Q ss_pred -EEEeeceEEEEeCCCccc-------ceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEE--eecCCCcce
Q 001163 993 -LAVHETQIAIYEAPKLEC-------LKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGV--LTASTLRLR 1055 (1134)
Q Consensus 993 -~~~~d~~i~iwd~~~~~~-------~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~v--wd~~~~~~~ 1055 (1134)
+++..|.++...+..... +..+ .-.+.+..+....+...++..+.+|.+.. +++..-...
T Consensus 181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i---~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i~~~ 250 (276)
T 3no0_A 181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS---GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDIPLS 250 (276)
T ss_dssp EEEETTSCEEEEEGGGSCCCCTTCCCEECC---CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGSCBC
T ss_pred EEEeCCCcEEEeEHHHcccCCCCCcceEEE---cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHCCCc
Confidence 447778888877653322 1112 11345555554444456667777888877 877654443
No 375
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=54.39 E-value=2.8e+02 Score=31.35 Aligned_cols=180 Identities=11% Similarity=0.085 Sum_probs=91.4
Q ss_pred CCCCEEEEEEecCCCceEEEEEeCCCe----------------------------EEEEECCCCceeEEecCC--CcC--
Q 001163 462 HVGSVNDLAFSYPNKQLSVVTCGEDRV----------------------------IKVWDAVTGTKQYIFEGH--ESP-- 509 (1134)
Q Consensus 462 h~~~V~~v~~s~~~~~~~l~s~s~d~~----------------------------i~iwd~~~~~~~~~~~~h--~~~-- 509 (1134)
|-..+....|.-||+. -++....+++ +.++|=.+|+.+.++.-. .+.
T Consensus 177 ~yt~~~V~DlDGDGka-EIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~ 255 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKA-EVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVS 255 (591)
T ss_dssp TSCCCEEECSSSSSSC-EEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGG
T ss_pred ccCceeEEEcCCCCcc-eEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCccc
Confidence 5666777778888876 4555555554 788888888887765321 111
Q ss_pred -------------EEEEeccccCCccEEEEec---CCCcEEEEecCCCCce--eeecCC-----------CCCeeEEEEC
Q 001163 510 -------------VYSICPHHKENIQFIFSTA---TDGKIKAWLYDNLGSR--VDYDAP-----------GHSSTMMAYS 560 (1134)
Q Consensus 510 -------------v~~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~~--~~~~~~-----------~~~v~~~~~s 560 (1134)
..++++. +.+...++.+- .-..|..||....+.. ..+... .+......+.
T Consensus 256 ~WGD~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVD 334 (591)
T 2zux_A 256 DWGDSYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVD 334 (591)
T ss_dssp GGTCSSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCS
T ss_pred ccccccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCC
Confidence 2233321 22222333322 1123667776554332 222211 1234444455
Q ss_pred cCCCE-EEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCC--CEEEEEeCCC----eEEEEEcCCCcee
Q 001163 561 ADGAR-LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK--NRFLAAGDEF----MIKFWDMDNVNLL 633 (1134)
Q Consensus 561 ~~~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg----~i~iwd~~~~~~~ 633 (1134)
-||+- |+.++. ++| ..|+.+......+...+....|.|+. ..++.+.+++ -..+.|..+|+.+
T Consensus 335 gDG~dEIv~Gs~---------~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vl 404 (591)
T 2zux_A 335 GDGKDEIIFGSM---------AVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKIL 404 (591)
T ss_dssp SSSSCEEEETTE---------EEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEE
T ss_pred CCCCceEEEeee---------EEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEE
Confidence 55543 222221 222 23444444433333366667788874 4666666541 3556899999998
Q ss_pred EEEecCCCCCCcceEEEcCC
Q 001163 634 ASIDADGGLQASPCIRFNKE 653 (1134)
Q Consensus 634 ~~~~~~~~~~~v~~v~~sp~ 653 (1134)
................|.|+
T Consensus 405 w~~~~~~d~Gr~~~~Didp~ 424 (591)
T 2zux_A 405 WGVYAGKDVGRGMAADIDPR 424 (591)
T ss_dssp EEECCSSCCCCEEEECCCTT
T ss_pred EEcCCCCCCCceeEEecCCC
Confidence 87764333333333334443
No 376
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=50.58 E-value=29 Score=40.03 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=41.3
Q ss_pred CceEEEEcCCCCEEEEEeec--------------eEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEe
Q 001163 979 ADTRVQFHLDQTHLLAVHET--------------QIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAF 1039 (1134)
Q Consensus 979 ~v~~l~fs~dg~~l~~~~d~--------------~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 1039 (1134)
..-.|+|+++|++++. .|+ .+.+.+..+++...-+.. .-..+++.++|+||++.|++.-
T Consensus 477 ~PDNL~fd~~G~LwI~-eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~-P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWIL-TDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEE-ECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEEE
T ss_pred CCcceEECCCCCEEEE-ecCCCcccccccccccceEEEEeCCCCeEEEEEeC-CCCccCcCeeECCCCCEEEEEE
Confidence 3566999999995554 332 356666666765544442 3368999999999999988764
No 377
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=46.97 E-value=76 Score=32.70 Aligned_cols=85 Identities=14% Similarity=0.039 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHhhhcC-HHHHHHHHHH--hcCCCc-c--HHHH--HHHhhcccHHHHHHHHcccCcccCCccchhHHHHH
Q 001163 5 SRELVFLILQFLDEEK-FKETVHKLEQ--DSGFFF-N--MRYF--EDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEI 76 (1134)
Q Consensus 5 ~~e~~~li~q~L~~~g-~~~s~~~l~~--Esg~~~-~--~~~~--~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i 76 (1134)
.-+.++++.+++...| +.++.+.|++ +.++.. + ...+ .-....|++++|+..+.+ +.+. . +.+.
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~--~-~~~~- 135 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSL--E-CMAM- 135 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSH--H-HHHH-
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCH--H-HHHH-
Confidence 3456778888888877 7777777776 333322 2 1111 334567888888888876 2111 0 1111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhh
Q 001163 77 RKQKYLEALDKRDRAKAVEILVKD 100 (1134)
Q Consensus 77 ~~~~~lEll~~~~~~~a~~~l~~~ 100 (1134)
.-.=++..|+.++|+..+++.
T Consensus 136 ---l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 136 ---TVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp ---HHHHHHHTTCHHHHHHHHHHH
T ss_pred ---HHHHHHHCCCHHHHHHHHHHH
Confidence 111244567777777777764
No 378
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=46.97 E-value=3e+02 Score=29.55 Aligned_cols=211 Identities=8% Similarity=0.044 Sum_probs=98.5
Q ss_pred EEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeE
Q 001163 779 VSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYV 858 (1134)
Q Consensus 779 i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l 858 (1134)
+..++++......++...||.+..|-......--.+... +......+. .+ ....|..++.... ..+
T Consensus 107 ~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~--------~~~~p~~v~-~l----~~~~i~~va~G~~-hs~ 172 (389)
T 3kci_A 107 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRS--------PCDRPRVIE-SL----RGIEVVDVAAGGA-HSA 172 (389)
T ss_dssp EEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCC--------CEEEEEECG-GG----TTSCEEEEEECSS-EEE
T ss_pred eeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCc--------cCcCCeEec-cc----CCCeEEEEEeCcC-eEE
Confidence 444556666666667777888888854321100000000 000000000 01 1224555554322 233
Q ss_pred EEeeCCeEEEEEccC-C----------eEEEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc-ce-------
Q 001163 859 MSASGGKISLFNMMT-F----------KTMTTFMP-PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-DE------- 918 (1134)
Q Consensus 859 a~~sdg~i~lwd~~~-~----------~~~~~~~~-~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~-~~------- 918 (1134)
+...+|.|+.|-... + .....+.. ....|..++... +....+.-..||.|+.|-... ++
T Consensus 173 alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~-g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~ 251 (389)
T 3kci_A 173 CVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGS-GDAQTLCLTDDDTVWSWGDGDYGKLGRGGSD 251 (389)
T ss_dssp EEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECC-SSCEEEEEETTTEEEEEECCGGGTTSSSSCC
T ss_pred EEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcC-CCcEEEEEccCCEEEEEeCCCCCCCCCCCCC
Confidence 344478888885422 1 01111211 223567777654 335666677899999996532 11
Q ss_pred ---EEEeccC-ccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccc------c-ceeeeecCCCCCCCCCceEEEEcC
Q 001163 919 ---VKTKLKG-HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQ------A-SKFLTIPNGRTASALADTRVQFHL 987 (1134)
Q Consensus 919 ---~~~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~------~-~~~~~~~~~~~~~~~~v~~l~fs~ 987 (1134)
....+.. ....|..++.. ..+.+.-..||.|..|-....-.. . .....+.... ...|..++...
T Consensus 252 ~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~---~~~v~~ia~G~ 326 (389)
T 3kci_A 252 GCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQ---GKKVIAIATGS 326 (389)
T ss_dssp CEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT---TCCEEEEEECS
T ss_pred CccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCC---CCCEEEEEecc
Confidence 1112221 12246666554 334444567999999976431111 0 0111111100 02244444433
Q ss_pred CCCEEEEEeeceEEEEeCCCccc
Q 001163 988 DQTHLLAVHETQIAIYEAPKLEC 1010 (1134)
Q Consensus 988 dg~~l~~~~d~~i~iwd~~~~~~ 1010 (1134)
. ..++...||+|+.|=......
T Consensus 327 ~-h~~al~~~G~v~~wG~n~~Gq 348 (389)
T 3kci_A 327 L-HCVCCTEDGEVYTWGDNDEGQ 348 (389)
T ss_dssp S-EEEEEETTCCEEEEECCTTST
T ss_pred C-eEEEECCCCCEEEeeCCCCCc
Confidence 2 234557888999998765433
No 379
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=46.72 E-value=3.7e+02 Score=30.54 Aligned_cols=68 Identities=9% Similarity=0.115 Sum_probs=37.5
Q ss_pred CCeeEEEecCCCCCceEEEEEcCCC--CEEEEEeCC----CeEEEEEcCCCceeEEEecCCCCCCcceEEEcCC
Q 001163 586 EGAVKRTYHGLGKRSVGVVQFDTTK--NRFLAAGDE----FMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 653 (1134)
Q Consensus 586 ~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 653 (1134)
.|+.+......+...+....|.|+. -.++.+.++ ....+.|..+|+.+................|.|+
T Consensus 355 dG~~L~st~~gHGDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~~~D~Gr~~~~Didp~ 428 (620)
T 2zuy_A 355 DGTGLYSTGLGHGDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAGTDVGRGMAAHIDPS 428 (620)
T ss_dssp TSSEEEECSCCCCSCEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCEEEEECCCTT
T ss_pred CCCEEeecCCCCCceeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEecCcccCCceEEEecCCC
Confidence 4444444433333356666677763 455555543 2467789999999887764333333333334443
No 380
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=45.81 E-value=28 Score=30.77 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=50.8
Q ss_pred CcchHHHHHHHHHHhhhcCH-HHHHHHHHHhcCCCccHHHHHHHhhcccHHHHHHHHcccC--cccCCccchhHHHHHHH
Q 001163 2 SSLSRELVFLILQFLDEEKF-KETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGFT--KVDDNRYSMKIFFEIRK 78 (1134)
Q Consensus 2 ~~~~~e~~~li~q~L~~~g~-~~s~~~l~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~~~--~~~~~~~~~~~~~~i~~ 78 (1134)
+....++...|+..|.+.|| ..+...+.++.|+.. -+++.|+..++.+. .+-..++..-++..+.+
T Consensus 18 ~~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~-----------~eve~vL~~iQ~~dP~GVgArdL~ECLllQL~~ 86 (130)
T 2k9m_A 18 EGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSV-----------EELEKVRQKVLRLEPLGVCSKDVWEFLELQIEE 86 (130)
T ss_dssp CSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCH-----------HHHHHHHHHHHTSSSCCTTTSCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCH-----------HHHHHHHHHHhcCCCCccccCCHHHHHHHHHhc
Confidence 34567788999999999997 355666666666543 24456666666662 22333322212222221
Q ss_pred ---------HHHHH-HHhcCCHH-HHHHHHHhhccc
Q 001163 79 ---------QKYLE-ALDKRDRA-KAVEILVKDLKV 103 (1134)
Q Consensus 79 ---------~~~lE-ll~~~~~~-~a~~~l~~~l~~ 103 (1134)
..+|| +|..+++. +|+.++| .|.|
T Consensus 87 ~~~~a~~ii~~~l~~~la~~~~~~~~~~~Ir-~L~P 121 (130)
T 2k9m_A 87 IYPEEEEILKKALRDLKRGKKLKPEIKGKLS-RLRL 121 (130)
T ss_dssp SCSTTHHHHHHHHHHHHHSCCCCHHHHHHHH-TCCS
T ss_pred CchhHHHHHHHhHHHHHHcCCHHHHHHHHHH-cCCC
Confidence 14566 77666643 3555655 4544
No 381
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=44.70 E-value=1.4e+02 Score=25.15 Aligned_cols=89 Identities=10% Similarity=0.009 Sum_probs=50.5
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHH
Q 001163 8 LVFLILQFLDEEKFKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYL 82 (1134)
Q Consensus 8 ~~~li~q~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~l 82 (1134)
...+...++...-|.++...+++-.....+ ...-.-....|+|++|+.++.+...+.... ..+.+ ..-.
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~----~la~ 92 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF--IKGYT----RKAA 92 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--HHHHH----HHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--hHHHH----HHHH
Confidence 344555555556678888877775554432 122233456789999988887763332221 11111 1112
Q ss_pred HHHhcCCHHHHHHHHHhhcc
Q 001163 83 EALDKRDRAKAVEILVKDLK 102 (1134)
Q Consensus 83 Ell~~~~~~~a~~~l~~~l~ 102 (1134)
-+...++.++|+..+++-+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 23456888899888887543
No 382
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=43.26 E-value=56 Score=37.11 Aligned_cols=62 Identities=13% Similarity=0.172 Sum_probs=42.8
Q ss_pred CCceEEEEcCCCCEEEEEee-------------ceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEec
Q 001163 978 LADTRVQFHLDQTHLLAVHE-------------TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFE 1040 (1134)
Q Consensus 978 ~~v~~l~fs~dg~~l~~~~d-------------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 1040 (1134)
.....|.|+++|.+.+.... ..+..++..+++....+.. .....++.++||||+++|+++-.
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~-P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC-CCCccccCCEECCCCCEEEEEEe
Confidence 34678999999987664311 1567777777775444431 22467999999999999887653
No 383
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=43.26 E-value=87 Score=28.11 Aligned_cols=94 Identities=16% Similarity=0.193 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHHHHHhcCCHHHHHH
Q 001163 21 FKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVE 95 (1134)
Q Consensus 21 ~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~ 95 (1134)
+.++...+++-.....+ ...=+-....|+|++|+.++.+.-.+..+. ...+...-.=+...|+.++|+.
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD------PKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCchHHHHH
Confidence 44555556654443332 111223467799999999998873333322 1122222233445799999999
Q ss_pred HHHhhcccccccCHHHHHHHHHHhcc
Q 001163 96 ILVKDLKVFSAFNEDLFKEITQLLTL 121 (1134)
Q Consensus 96 ~l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1134)
.+++.+. +.+.+++-+..|..++..
T Consensus 87 ~~~~al~-~~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 87 CYRRSVE-LNPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHH-HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHHHHHHH
Confidence 9998654 222366777788877654
No 384
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=43.04 E-value=1.5e+02 Score=30.27 Aligned_cols=14 Identities=14% Similarity=0.069 Sum_probs=6.8
Q ss_pred cccHHHHHHHHccc
Q 001163 47 NGEWDEVEKYLSGF 60 (1134)
Q Consensus 47 ~g~w~~~~~~l~~~ 60 (1134)
.|++++|++.+..+
T Consensus 78 ~~~~~~A~~~l~~l 91 (291)
T 3mkr_A 78 HSRRDAIVAELDRE 91 (291)
T ss_dssp STTHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 34455555555443
No 385
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=40.63 E-value=12 Score=47.87 Aligned_cols=39 Identities=15% Similarity=0.038 Sum_probs=32.4
Q ss_pred CEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCC
Q 001163 1022 PITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINP 1060 (1134)
Q Consensus 1022 ~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~ 1060 (1134)
.+.+++..++..+|++.+.|+++|||++.++.++.....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 445566778999999999999999999999988776553
No 386
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=40.45 E-value=3.4e+02 Score=28.29 Aligned_cols=240 Identities=10% Similarity=0.081 Sum_probs=124.7
Q ss_pred CCCCeEEEee-CCeEEEEEccCCeE----EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc---------ce
Q 001163 853 KNDSYVMSAS-GGKISLFNMMTFKT----MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV---------DE 918 (1134)
Q Consensus 853 ~dg~~la~~s-dg~i~lwd~~~~~~----~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~---------~~ 918 (1134)
|+..++++.+ +|.|+--.+...+. -..++ ....+..+.... ....|+..++.|.++-+.... |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 3445566666 78887665542211 11122 223444444444 455677778888776665532 23
Q ss_pred EEEec-cC-ccCceEEEEEeeC---CCEEEEEeCCCcEEEEECCCCccc----cceeeeecCCCCCCCCCceEEEEc-CC
Q 001163 919 VKTKL-KG-HQKRITGLAFSNT---LNVLVSSGADSQLCVWSTDGWEKQ----ASKFLTIPNGRTASALADTRVQFH-LD 988 (1134)
Q Consensus 919 ~~~~l-~~-h~~~V~~l~~s~d---~~~l~s~s~Dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~l~fs-~d 988 (1134)
.+..+ .- ....|.++..-++ +.+++.++.+|.++.-.+..-... ....+...++ +.+..+... .+
T Consensus 81 ~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-----d~lv~~~~~~~~ 155 (323)
T 1wp5_A 81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-----DQVVDVHLTDGM 155 (323)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-----CCEEEEEEECSC
T ss_pred ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-----CEEEEEEEeCCC
Confidence 22111 11 2234665543332 668999999999999987643321 1122223332 234444443 44
Q ss_pred CCEEEEEeeceEEEEeCCCccc-------ceeeccCCCccCEEEEEEccCCC-EEEEEecCCcEEEeecCCCcceeecCC
Q 001163 989 QTHLLAVHETQIAIYEAPKLEC-------LKQFVPREASGPITHATYSCDSQ-SIYVAFEEGSVGVLTASTLRLRCRINP 1060 (1134)
Q Consensus 989 g~~l~~~~d~~i~iwd~~~~~~-------~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s~Dg~i~vwd~~~~~~~~~~~~ 1060 (1134)
...++++.+|.+..+....-.. +..+... -...|.++...+++. .|++.+..|..+..++..-....+-..
T Consensus 156 ~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k 234 (323)
T 1wp5_A 156 NELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR 234 (323)
T ss_dssp SEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC
T ss_pred CEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC
Confidence 4555557888888887653221 1112221 245677765545555 788888899888877765333222111
Q ss_pred CcccCC---CCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163 1061 TAYLPT---NPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus 1061 ~~~~~~---~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
....+. .-...+..+. ... +.+.++..+..|.+.-..+.+
T Consensus 235 Gv~~~~~~~~~~~~l~~~~-~v~--~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 235 GVVILRELKANPHRISGFV-VAQ--DSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CEECSCCCSSSCCCEEEEE-EEC--TTCEEEEEETTSCEEEEEGGG
T ss_pred CEECeeecCCCCceEEEEE-EeC--CCCeEEEEeCCCeEEEEEhhh
Confidence 111110 1112333221 222 345677888888877666654
No 387
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=39.90 E-value=3.4e+02 Score=28.12 Aligned_cols=198 Identities=11% Similarity=0.080 Sum_probs=103.8
Q ss_pred cCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEE-EeeCC
Q 001163 786 NSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVM-SASGG 864 (1134)
Q Consensus 786 pdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la-~~sdg 864 (1134)
++...+++.+.+|.++--.+..-.... ....-.....+. ....+..+........++ ....|
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~--------------~~~~g~~~~~lk---e~D~l~~~~~~~~~~~ll~~T~~G 68 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQG--------------TGGKGLSSFDLN---DGDEIVIALCVNTHDYLFMISNEG 68 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCC--------------SSCCCEECCCCC---TTCCEEEEEEEETTCEEEEEETTS
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccc--------------cCCCCceecccC---CCCEEEEEEEECCCCEEEEEECCC
Confidence 456678888889988866543211000 000001111122 234444444444444444 44478
Q ss_pred eEEEEEccCCeEE------------EEecCCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEEccc-------ceEEEec
Q 001163 865 KISLFNMMTFKTM------------TTFMPPPPAATFLAFHPQ--DNNIIAIGMEDSSIQIYNVRV-------DEVKTKL 923 (1134)
Q Consensus 865 ~i~lwd~~~~~~~------------~~~~~~~~~v~~l~~sp~--~~~~la~g~~dg~i~iwd~~~-------~~~~~~l 923 (1134)
.++-+....-... ..+. ....|.++...++ ++.+|+..+..|.++...+.. |.....+
T Consensus 69 ~~~~~~~~~ip~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L 147 (312)
T 1suu_A 69 KLYLINAYEIKDSSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKL 147 (312)
T ss_dssp EEEEEEGGGSCC-------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCC
T ss_pred eEEEEEHHHCCCCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEec
Confidence 7666654321111 0122 2234555543321 356788889999999988753 2222334
Q ss_pred cCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCcc-----ccceeeeecCCCCCCCCCceEEEEcCCCCEE-EEEee
Q 001163 924 KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEK-----QASKFLTIPNGRTASALADTRVQFHLDQTHL-LAVHE 997 (1134)
Q Consensus 924 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l-~~~~d 997 (1134)
.. .+.+..+....+...++..+.+|.+..+....-.. .....+.+..+ +.+..+..-.++..+ +++..
T Consensus 148 ~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~-----d~vv~~~~v~~~~~l~~vt~~ 221 (312)
T 1suu_A 148 ND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEG-----DLFVKVLSVKENPYLLIVSEN 221 (312)
T ss_dssp CT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTT-----CCEEEEEECTTCSEEEEEETT
T ss_pred CC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCC-----CEEEEEEEECCCCeEEEEECC
Confidence 43 56677776666667888899999999998765211 11222333222 345555554445544 44777
Q ss_pred ceEEEEeCCC
Q 001163 998 TQIAIYEAPK 1007 (1134)
Q Consensus 998 ~~i~iwd~~~ 1007 (1134)
|.....++..
T Consensus 222 G~~kr~~~~e 231 (312)
T 1suu_A 222 GYGKRLNMSK 231 (312)
T ss_dssp SEEEEEEGGG
T ss_pred CceEEEEHHH
Confidence 8888887754
No 388
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=39.02 E-value=95 Score=35.72 Aligned_cols=63 Identities=11% Similarity=0.203 Sum_probs=47.4
Q ss_pred eeEEEECcCCCEEEEEecC--------CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEE
Q 001163 554 STMMAYSADGARLFSCGTN--------KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAA 616 (1134)
Q Consensus 554 v~~~~~s~~~~~l~~~~~~--------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 616 (1134)
.-.|+|+|.|++++.--.+ ..+...+.+.+..+++..+.+.+.....++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4568999999865543111 01345678888889998888888888899999999999887664
No 389
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=38.65 E-value=3.5e+02 Score=27.92 Aligned_cols=202 Identities=10% Similarity=0.107 Sum_probs=105.1
Q ss_pred CCeeEEE-EcCCCCeEEEeeCCeEEEEEc---c------CCeEEE---EecCCCCCeEEEEEcC--CCCcEEEEEeCCCc
Q 001163 844 DAVPCFA-LSKNDSYVMSASGGKISLFNM---M------TFKTMT---TFMPPPPAATFLAFHP--QDNNIIAIGMEDSS 908 (1134)
Q Consensus 844 ~~v~~v~-~s~dg~~la~~sdg~i~lwd~---~------~~~~~~---~~~~~~~~v~~l~~sp--~~~~~la~g~~dg~ 908 (1134)
..+..+. .+....+++..+.|.++-+.. . .|..+. .+. ....|.++...+ +++.+++..+.+|.
T Consensus 42 D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~ 120 (307)
T 1zi0_A 42 DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGT 120 (307)
T ss_dssp CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSE
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCe
Confidence 3343333 334444555555777555443 2 222222 122 334566554421 14567889999999
Q ss_pred EEEEEccc-------ceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccc-----cceeeeecCCCCCC
Q 001163 909 IQIYNVRV-------DEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQ-----ASKFLTIPNGRTAS 976 (1134)
Q Consensus 909 i~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~ 976 (1134)
++-..+.. |.....+..+ +.+..+....+...++..+.+|.+..++...-... ....+.+..+
T Consensus 121 ~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~---- 195 (307)
T 1zi0_A 121 VKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEG---- 195 (307)
T ss_dssp EEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT----
T ss_pred EEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCC----
Confidence 99988753 2222234444 56666666656667888888998888876542211 1111222222
Q ss_pred CCCceEEEEcCCCCEEE-EEeeceEEEEeCCCccc-------ceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEee
Q 001163 977 ALADTRVQFHLDQTHLL-AVHETQIAIYEAPKLEC-------LKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLT 1048 (1134)
Q Consensus 977 ~~~v~~l~fs~dg~~l~-~~~d~~i~iwd~~~~~~-------~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd 1048 (1134)
+.+..+....++..++ ++..|.++-.++..... +..+....-.+.+..+....+..-|+..+.+|.+.-++
T Consensus 196 -d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~ 274 (307)
T 1zi0_A 196 -DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTR 274 (307)
T ss_dssp -CCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEE
T ss_pred -CEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEe
Confidence 3456665444444444 46777777776643221 11111111134555555444445556666777776666
Q ss_pred cCCC
Q 001163 1049 ASTL 1052 (1134)
Q Consensus 1049 ~~~~ 1052 (1134)
+..-
T Consensus 275 ~~~i 278 (307)
T 1zi0_A 275 VSEI 278 (307)
T ss_dssp GGGS
T ss_pred cccc
Confidence 6553
No 390
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=37.43 E-value=3.7e+02 Score=27.83 Aligned_cols=238 Identities=9% Similarity=0.046 Sum_probs=127.4
Q ss_pred CCCeEEEee-CCeEEEEEccCCeEEE-------E--ecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccc------
Q 001163 854 NDSYVMSAS-GGKISLFNMMTFKTMT-------T--FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD------ 917 (1134)
Q Consensus 854 dg~~la~~s-dg~i~lwd~~~~~~~~-------~--~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~------ 917 (1134)
+..++++.+ +|.|+--.+...+... . ++ ....+..+.... ....++..+..|.++-+....-
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 445566666 7888877665432211 1 22 223444444444 4557777888998777765421
Q ss_pred ---eEE---EeccCccCceEEEEEee---CCCEEEEEeCCCcEEEEECCCCccc---cceeeeecCCCCCCCCCceEEEE
Q 001163 918 ---EVK---TKLKGHQKRITGLAFSN---TLNVLVSSGADSQLCVWSTDGWEKQ---ASKFLTIPNGRTASALADTRVQF 985 (1134)
Q Consensus 918 ---~~~---~~l~~h~~~V~~l~~s~---d~~~l~s~s~Dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~l~f 985 (1134)
..+ -.+. ....|.++...+ +..+|+..+.+|.++.-.+..-... ....+.+.++ +.+..+..
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~-----d~lv~~~~ 158 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDK-----DFVTSAEI 158 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTT-----CCEEEEEE
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCC-----CEEEEEEE
Confidence 110 1122 224455554433 4678889999999998887543221 1122222222 33555544
Q ss_pred -cCCCCEEEEEeeceEEEEeCCCcc-------cceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceee
Q 001163 986 -HLDQTHLLAVHETQIAIYEAPKLE-------CLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCR 1057 (1134)
Q Consensus 986 -s~dg~~l~~~~d~~i~iwd~~~~~-------~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~ 1057 (1134)
.++...++++.+|.+..+....-. -+..+.... ...|.++....++..|++.+..|..+..++..-....+
T Consensus 159 ~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R 237 (312)
T 1suu_A 159 VFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKR 237 (312)
T ss_dssp ECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred eCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCC
Confidence 444555566888988888775421 112222222 45677776666677788899999999988866544333
Q ss_pred cCCCcccCC---CCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163 1058 INPTAYLPT---NPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus 1058 ~~~~~~~~~---~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
-........ .-...+..+. .+. +...+...+..|.+.-..+.+
T Consensus 238 ~~kGv~~~~~~k~~~~~lv~~~-~~~--~~~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 238 GATGYTSYKKSDKKAGSVVDAI-AVS--EDDEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp TCCCEECSCTTCTTTCSEEEEE-EEC--TTCEEEEEETTCEEEEEEGGG
T ss_pred CCCCEEeeEccCCCCCeEEEEE-EeC--CCCEEEEEeCCCeEEEEEccc
Confidence 221111110 1123333332 232 345667777777554444443
No 391
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=37.37 E-value=1.2e+02 Score=26.11 Aligned_cols=100 Identities=12% Similarity=0.169 Sum_probs=50.6
Q ss_pred hhhcCHHHHHHHHHHhcCCCcc-HH----HHHHHhhcccHHHHHHHHcccCccc-CCccchhHHHHHHHHHHHHHHhcCC
Q 001163 16 LDEEKFKETVHKLEQDSGFFFN-MR----YFEDMVTNGEWDEVEKYLSGFTKVD-DNRYSMKIFFEIRKQKYLEALDKRD 89 (1134)
Q Consensus 16 L~~~g~~~s~~~l~~Esg~~~~-~~----~~~~~i~~g~w~~~~~~l~~~~~~~-~~~~~~~~~~~i~~~~~lEll~~~~ 89 (1134)
.+..-|.++...+++=-.+..+ .. .=.-....|+|++|+..+.+.-.+. ........+-.++-..=.-+...++
T Consensus 19 ~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~ 98 (127)
T 4gcn_A 19 YKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQND 98 (127)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCC
Confidence 3334477777777664333332 11 1123456789999988876652221 1110000111122222223445688
Q ss_pred HHHHHHHHHhhcccccccCHHHHHHHHH
Q 001163 90 RAKAVEILVKDLKVFSAFNEDLFKEITQ 117 (1134)
Q Consensus 90 ~~~a~~~l~~~l~~~~~~~~~~~~~l~~ 117 (1134)
+++|+..+++-|.-. .+++....|..
T Consensus 99 ~~~A~~~~~kal~~~--~~~~~~~~l~~ 124 (127)
T 4gcn_A 99 LSLAVQWFHRSLSEF--RDPELVKKVKE 124 (127)
T ss_dssp HHHHHHHHHHHHHHS--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--cCHHHHHHHHH
Confidence 889988888765521 25555555443
No 392
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=37.25 E-value=1.8e+02 Score=26.21 Aligned_cols=102 Identities=10% Similarity=0.012 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHH
Q 001163 6 RELVFLILQFLDEEKFKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1134)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 80 (1134)
++|-.-|.++|.+.+. |++=..+..+ ...=......|++++|+..+.+...++... .. .+-..
T Consensus 9 ~~~~~~l~~~~~~~~~------l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~----~~--~~~~l 76 (151)
T 3gyz_A 9 ESISTAVIDAINSGAT------LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN----VD--YIMGL 76 (151)
T ss_dssp CHHHHHHHHHHHTSCC------TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HH--HHHHH
T ss_pred HHHHHHHHHHHHCCCC------HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HH--HHHHH
Confidence 3456677777776653 2222233332 111233456889999988888773333222 11 12222
Q ss_pred HHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhc
Q 001163 81 YLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120 (1134)
Q Consensus 81 ~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1134)
=.-+...|++++|+..+++.+. +.+.+++-+..|..++.
T Consensus 77 g~~~~~~g~~~~Ai~~~~~al~-l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 77 AAIYQIKEQFQQAADLYAVAFA-LGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHh-hCCCCcHHHHHHHHHHH
Confidence 2334556888999888887533 11224455555555543
No 393
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=37.16 E-value=29 Score=27.63 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHhcCCC
Q 001163 7 ELVFLILQFLDEEKFKETVHKLEQDSGFF 35 (1134)
Q Consensus 7 e~~~li~q~L~~~g~~~s~~~l~~Esg~~ 35 (1134)
-+.-||-.||.=.||+-|+..++-|+|..
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 35679999999999999999999999986
No 394
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=37.07 E-value=1.5e+02 Score=30.30 Aligned_cols=104 Identities=12% Similarity=0.146 Sum_probs=59.1
Q ss_pred HHHHHhhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHHHHH
Q 001163 11 LILQFLDEEKFKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEAL 85 (1134)
Q Consensus 11 li~q~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll 85 (1134)
+-..++..--+.++...+++=.....+ ...-+-.+..|++++|+..+.++.....+. ....-..-+++.
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~------~~~~~~~~~~l~ 196 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT------RYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH------HHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch------HHHHHHHHHHHH
Confidence 333344444566776666664433332 223344567899999999998874433221 122233445566
Q ss_pred hcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcc
Q 001163 86 DKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTL 121 (1134)
Q Consensus 86 ~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1134)
..++..+|+..|++.+.- .+.+.+-...|..++..
T Consensus 197 ~~~~~~~a~~~l~~al~~-~P~~~~~~~~la~~l~~ 231 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAE-NPEDAALATQLALQLHQ 231 (287)
T ss_dssp HHHTSCHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred hhcccCccHHHHHHHHhc-CCccHHHHHHHHHHHHH
Confidence 667777788888765442 12355666666666553
No 395
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=35.84 E-value=1.9e+02 Score=25.63 Aligned_cols=80 Identities=11% Similarity=-0.070 Sum_probs=37.1
Q ss_pred HhhhcCHHHHHHHHHHhcCCCcc-H----HHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHHHHHhcCC
Q 001163 15 FLDEEKFKETVHKLEQDSGFFFN-M----RYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRD 89 (1134)
Q Consensus 15 ~L~~~g~~~s~~~l~~Esg~~~~-~----~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~ 89 (1134)
++...-|.++...+++=..+..+ . ..=.-....|+|++|+..+.+...+.... .. ..|. .=.=++..|+
T Consensus 31 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~-~~~~----lg~~~~~~g~ 104 (148)
T 2vgx_A 31 QYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE-PR-FPFH----AAECLLQXGE 104 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-TH-HHHH----HHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-ch-HHHH----HHHHHHHcCC
Confidence 33334466666666553332221 1 11122345677777777766552222111 11 1111 1122345677
Q ss_pred HHHHHHHHHhh
Q 001163 90 RAKAVEILVKD 100 (1134)
Q Consensus 90 ~~~a~~~l~~~ 100 (1134)
.++|+..+++-
T Consensus 105 ~~~A~~~~~~a 115 (148)
T 2vgx_A 105 LAEAESGLFLA 115 (148)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777653
No 396
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=35.69 E-value=62 Score=26.47 Aligned_cols=84 Identities=10% Similarity=0.034 Sum_probs=42.0
Q ss_pred HhhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHHHHHhc-C
Q 001163 15 FLDEEKFKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK-R 88 (1134)
Q Consensus 15 ~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~-~ 88 (1134)
++...-|.++...+++-.....+ ...=.-....|+|++|+..+.+.......... ..++...-.=+... +
T Consensus 16 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~~~l~~~~~~~~~ 91 (112)
T 2kck_A 16 QYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN----KDVWAAKADALRYIEG 91 (112)
T ss_dssp HHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC----HHHHHHHHHHHTTCSS
T ss_pred HHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch----HHHHHHHHHHHHHHhC
Confidence 33344466666666553322221 11222345678888888887766322221000 11222222223456 7
Q ss_pred CHHHHHHHHHhhcc
Q 001163 89 DRAKAVEILVKDLK 102 (1134)
Q Consensus 89 ~~~~a~~~l~~~l~ 102 (1134)
+.++|+.++++-+.
T Consensus 92 ~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 92 KEVEAEIAEARAKL 105 (112)
T ss_dssp CSHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHhh
Confidence 88888888876543
No 397
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=34.99 E-value=79 Score=40.21 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=31.5
Q ss_pred CEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEec
Q 001163 465 SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE 504 (1134)
Q Consensus 465 ~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 504 (1134)
.+.+++..++.. ++++-+.|+++|||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~--~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYN--VLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTT--EEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCcc--EEEEEeCCCEEEEEECCCCCeEEeec
Confidence 455666677777 89999999999999999999988754
No 398
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=33.74 E-value=1.5e+02 Score=29.37 Aligned_cols=106 Identities=8% Similarity=0.006 Sum_probs=56.7
Q ss_pred HHHHHHhhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHHHH
Q 001163 10 FLILQFLDEEKFKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84 (1134)
Q Consensus 10 ~li~q~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEl 84 (1134)
++-.-++...-|.++...+++--....+ ...-.-....|++++|+.++.+....+.+.. .....+-..-.-+
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK---AKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTT---CCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchh---HHHHHHHHHHHHH
Confidence 3334444444578887777764433322 2333456678999999998887633332211 2222233333334
Q ss_pred HhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001163 85 LDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLL 119 (1134)
Q Consensus 85 l~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1134)
...|+.++|+..+++-+.-- +.+.+-+..+..+.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 118 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYF 118 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHH
Confidence 55688888888888754421 12334444444443
No 399
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=33.35 E-value=1.5e+02 Score=33.83 Aligned_cols=65 Identities=12% Similarity=0.186 Sum_probs=46.5
Q ss_pred CeeEEEECcCCCEEEEEecC--------CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe
Q 001163 553 SSTMMAYSADGARLFSCGTN--------KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG 617 (1134)
Q Consensus 553 ~v~~~~~s~~~~~l~~~~~~--------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 617 (1134)
....+.|.++|.+.+..-.. +.+...+..++..+++....+.+.....++.++|+||++.|++.-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45679999999877732110 112346888898889887777665555789999999998887753
No 400
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=32.78 E-value=2.3e+02 Score=24.04 Aligned_cols=59 Identities=10% Similarity=0.016 Sum_probs=29.8
Q ss_pred eEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCC
Q 001163 981 TRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAST 1051 (1134)
Q Consensus 981 ~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~ 1051 (1134)
..+.+..||.+++...+..-.+|...+... ..-..+.+..||.+++... ++.+ +|.-.+
T Consensus 26 ~~L~~q~dGNLvL~~~~~~~~vWssnt~~~----------~~~~~l~l~~dGNLVl~d~-~~~~-iW~S~t 84 (113)
T 3mez_B 26 YSLVMRDDCNLVLTKGSKTNIVWESGTSGR----------GQHCFMRLGHSGELDITDD-RLNT-VFVSNT 84 (113)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECCCTTS----------CSSCEEEECTTSCEEEECT-TSCE-EEECSC
T ss_pred EEEEEcCCCEEEEEECCCCEEEEECCcccC----------CcCEEEEEeCCCcEEEECC-CCCE-EEECCC
Confidence 446666676655543212334666543210 1113466777888766532 3443 676443
No 401
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=32.54 E-value=4.3e+02 Score=27.19 Aligned_cols=238 Identities=11% Similarity=0.064 Sum_probs=122.9
Q ss_pred CCCeEEEee-CCeEEEEEccCCeEEEE---------ecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc-------
Q 001163 854 NDSYVMSAS-GGKISLFNMMTFKTMTT---------FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV------- 916 (1134)
Q Consensus 854 dg~~la~~s-dg~i~lwd~~~~~~~~~---------~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~------- 916 (1134)
+..++++.+ +|.|+--.+.+.+..+. ++ ....+..+.... ....|+..++.|.++-+....
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 344556666 78877666544322211 22 223343443333 455677777888766665532
Q ss_pred --ceEEE---eccCccCceEEEEEe---eCCCEEEEEeCCCcEEEEECCCCccc---cceeeeecCCCCCCCCCceEEEE
Q 001163 917 --DEVKT---KLKGHQKRITGLAFS---NTLNVLVSSGADSQLCVWSTDGWEKQ---ASKFLTIPNGRTASALADTRVQF 985 (1134)
Q Consensus 917 --~~~~~---~l~~h~~~V~~l~~s---~d~~~l~s~s~Dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~l~f 985 (1134)
|..+. .+. ....|.++..- .++.+++..+.+|.++--.+..-... ....+...++ +.+..+..
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-----d~lv~~~~ 153 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-----DELIGVDL 153 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-----CCEEEEEE
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-----CEEEEEEE
Confidence 22221 122 23456665442 35678999999999999887542221 1122222222 23444443
Q ss_pred -cCCCCEEEEEeeceEEEEeCCCcccc-------eeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceee
Q 001163 986 -HLDQTHLLAVHETQIAIYEAPKLECL-------KQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCR 1057 (1134)
Q Consensus 986 -s~dg~~l~~~~d~~i~iwd~~~~~~~-------~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~ 1057 (1134)
..+...++.+.+|.+..++...-... ..+... -...|.++....++..|++.+..|.++-.++..-....+
T Consensus 154 ~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~R 232 (307)
T 1zi0_A 154 TSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSR 232 (307)
T ss_dssp ECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCT
T ss_pred eCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCC
Confidence 44455555678888877776432211 112211 245677776666667888899999999887754332222
Q ss_pred cCCCc--ccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163 1058 INPTA--YLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus 1058 ~~~~~--~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
-.... .-...-.+.+..+... . +...++..+.+|.+.-..+.+
T Consensus 233 g~kG~~~~~~~~~~~~lv~~~~v--~-~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 233 ATKGVISIKVTERNGLVVGAVQV--D-DCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp TSCCEESSCCCTTTCSEEEEEEE--C-TTCEEEEEESSCCEEEEEGGG
T ss_pred CCCCEEeeEecCCCCeEEEEEEe--C-CCceEEEEcCCCcEEEEeccc
Confidence 11110 0000112344333222 2 346677888888877776654
No 402
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=31.93 E-value=1.7e+02 Score=24.65 Aligned_cols=86 Identities=10% Similarity=-0.013 Sum_probs=48.7
Q ss_pred HHHHHhhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHHHHH
Q 001163 11 LILQFLDEEKFKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEAL 85 (1134)
Q Consensus 11 li~q~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll 85 (1134)
+-..++...-|.++...+++-..+..+ ...=.-....|+|++|+..+.+...+..... ..+-..-.=+.
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~ 83 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV------RAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHH
Confidence 334445555588888877765443332 1222334567999999988877633332211 11112222334
Q ss_pred hcCCHHHHHHHHHhhcc
Q 001163 86 DKRDRAKAVEILVKDLK 102 (1134)
Q Consensus 86 ~~~~~~~a~~~l~~~l~ 102 (1134)
..|+.++|+..+++-+.
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 56889999888886543
No 403
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=30.90 E-value=1.6e+02 Score=26.50 Aligned_cols=84 Identities=13% Similarity=0.053 Sum_probs=43.8
Q ss_pred HHHHhhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHHHHHh
Q 001163 12 ILQFLDEEKFKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALD 86 (1134)
Q Consensus 12 i~q~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~ 86 (1134)
-..++...-|.++...+++=..+..+ ...=.-....|+|++|+..+.+...+..... ..+-..-.=+..
T Consensus 18 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~ 91 (164)
T 3sz7_A 18 GNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS------KAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHH
Confidence 33444444477777766664433332 1222334567888888887776633322211 111112222344
Q ss_pred cCCHHHHHHHHHhhc
Q 001163 87 KRDRAKAVEILVKDL 101 (1134)
Q Consensus 87 ~~~~~~a~~~l~~~l 101 (1134)
.+++++|+..+++-+
T Consensus 92 ~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 92 MADYKGAKEAYEKGI 106 (164)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 678888888777543
No 404
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=30.77 E-value=2.5e+02 Score=24.43 Aligned_cols=16 Identities=13% Similarity=-0.014 Sum_probs=8.3
Q ss_pred hhcccHHHHHHHHccc
Q 001163 45 VTNGEWDEVEKYLSGF 60 (1134)
Q Consensus 45 i~~g~w~~~~~~l~~~ 60 (1134)
...|+|++|+..+.+.
T Consensus 63 ~~~g~~~~A~~~~~~a 78 (142)
T 2xcb_A 63 QSLGLYEQALQSYSYG 78 (142)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 3455555555555444
No 405
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=30.72 E-value=2.1e+02 Score=23.10 Aligned_cols=89 Identities=9% Similarity=-0.058 Sum_probs=47.6
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHH
Q 001163 8 LVFLILQFLDEEKFKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYL 82 (1134)
Q Consensus 8 ~~~li~q~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~l 82 (1134)
...+...++...-|.++...+++--....+ ...-.-....|+|++|+.++.+........ ....+ ..-.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~----~~a~ 80 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW--GKGYS----RKAA 80 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHH----HHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc--HHHHH----HHHH
Confidence 344555555566677777777664332221 122233456788888888887662222211 01111 1112
Q ss_pred HHHhcCCHHHHHHHHHhhcc
Q 001163 83 EALDKRDRAKAVEILVKDLK 102 (1134)
Q Consensus 83 Ell~~~~~~~a~~~l~~~l~ 102 (1134)
-+...|+.++|+..+++-+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 23456888888888876543
No 406
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=30.49 E-value=88 Score=25.54 Aligned_cols=54 Identities=4% Similarity=0.059 Sum_probs=33.4
Q ss_pred HHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 001163 43 DMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLK 102 (1134)
Q Consensus 43 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~ 102 (1134)
.....|+|++|+..+.+...+..... . +.+ ..=.-+...|+.++|+..+++-+.
T Consensus 16 ~~~~~g~~~~A~~~~~~al~~~p~~~-~-a~~----~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 16 EHLKHDNASRALALFEELVETDPDYV-G-TYY----HLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCT-H-HHH----HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcH-H-HHH----HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34567999999999987733332211 1 112 122233457999999999987544
No 407
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=30.32 E-value=2.5e+02 Score=26.81 Aligned_cols=108 Identities=9% Similarity=0.002 Sum_probs=59.5
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHHH
Q 001163 9 VFLILQFLDEEKFKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLE 83 (1134)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lE 83 (1134)
..+-..++...-|.++...+++-.....+ ...=.-....|++++|+..+.+...+..... . ..+. +-..|++
T Consensus 9 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-~-a~~~-lg~~~~~ 85 (217)
T 2pl2_A 9 LRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL-G-GYMV-LSEAYVA 85 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-H-HHHH-HHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-H-HHHH-HHHHHHH
Confidence 34444555555688888888887666554 1222334568999999999987633322211 1 1121 1112222
Q ss_pred H--------HhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhc
Q 001163 84 A--------LDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120 (1134)
Q Consensus 84 l--------l~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1134)
. +..|+.++|+..+++-+.- .+.+.+-+..|..++.
T Consensus 86 ~~~~~~~~~~~~g~~~~A~~~~~~al~~-~P~~~~~~~~lg~~~~ 129 (217)
T 2pl2_A 86 LYRQAEDRERGKGYLEQALSVLKDAERV-NPRYAPLHLQRGLVYA 129 (217)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHH
Confidence 1 1227888999998875431 1224444455555443
No 408
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=28.80 E-value=1.2e+02 Score=25.75 Aligned_cols=72 Identities=10% Similarity=0.026 Sum_probs=41.5
Q ss_pred HHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhc
Q 001163 42 EDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120 (1134)
Q Consensus 42 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1134)
...+..|+|++|+..+.+......... . ..+. .=.=+...|+.++|+..+++-+.- .+.+.+-+..|..++.
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~~~-~-a~~~----lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPERE-E-AWRS----LGLTQAENEKDGLAIIALNHARML-DPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCH-H-HHHH----HHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCH-H-HHHH----HHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 456778999999999887733322211 1 2221 122234579999999999875441 1224455555555443
No 409
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=28.03 E-value=2.4e+02 Score=33.01 Aligned_cols=37 Identities=16% Similarity=0.438 Sum_probs=30.3
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEec
Q 001163 600 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638 (1134)
Q Consensus 600 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (1134)
.|.++.+ +..++++.+.|.++|+|++.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3444433 468999999999999999999999988876
No 410
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=27.74 E-value=2.6e+02 Score=26.49 Aligned_cols=107 Identities=10% Similarity=0.039 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHhcCCCcc-H----H----------------HHHHHhhcccHHHHHHHHcccCccc
Q 001163 6 RELVFLILQFLDEEKFKETVHKLEQDSGFFFN-M----R----------------YFEDMVTNGEWDEVEKYLSGFTKVD 64 (1134)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~l~~Esg~~~~-~----~----------------~~~~~i~~g~w~~~~~~l~~~~~~~ 64 (1134)
.+++..-..++...-|.++...+++=.....+ . . .=.-....|++++|+..+.+.-.+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 45566666777777788888888775544433 1 1 1223467899999999998763332
Q ss_pred CCccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001163 65 DNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLL 119 (1134)
Q Consensus 65 ~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1134)
.... ...+. .=.-+...|+.++|+..+++-+. +.+.+.+-+..|..++
T Consensus 85 p~~~--~~~~~----lg~~~~~~g~~~~A~~~~~~al~-~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 85 PNNV--DCLEA----CAEMQVCRGQEKDALRMYEKILQ-LEADNLAANIFLGNYY 132 (208)
T ss_dssp TTCH--HHHHH----HHHHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH
T ss_pred CCCH--HHHHH----HHHHHHHcCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHH
Confidence 2221 12121 12223456999999999998544 2223455555555443
No 411
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=27.65 E-value=1.2e+02 Score=26.03 Aligned_cols=70 Identities=7% Similarity=0.009 Sum_probs=44.1
Q ss_pred HhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhc
Q 001163 44 MVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120 (1134)
Q Consensus 44 ~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1134)
....|+|++|+..+.+.-.+.... ..++-..-.=+...|+.++|+..+.+.+. +.+.+.+-+..+..++.
T Consensus 23 ~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNEAVKRDPEN------AILYSNRAACLTKLMEFQRALDDCDTCIR-LDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHhhHHHhhccHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHH
Confidence 567899999999998763332221 12233333445567999999999998654 22234566666666554
No 412
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=27.20 E-value=36 Score=27.11 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHhcCCCcc
Q 001163 6 RELVFLILQFLDEEKFKETVHKLEQDSGFFFN 37 (1134)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~l~~Esg~~~~ 37 (1134)
.++.+-|+++|++.| .++..|.++-|++-.
T Consensus 16 ~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~ 45 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR 45 (82)
T ss_dssp HHHHHHHHHHHSSST--EEHHHHHHHSSSCHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH
Confidence 467788889999999 899999999999863
No 413
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=26.86 E-value=40 Score=33.46 Aligned_cols=101 Identities=8% Similarity=0.170 Sum_probs=53.2
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHhcCCCccHHHHHHHhhccc---H---------HHHHHHHccc-CcccCCccchhHHH
Q 001163 8 LVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGE---W---------DEVEKYLSGF-TKVDDNRYSMKIFF 74 (1134)
Q Consensus 8 ~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~~~~i~~g~---w---------~~~~~~l~~~-~~~~~~~~~~~~~~ 74 (1134)
+++-+++||++.|+. +-+=+-+|-.-+++.|++.+-.|. + ..+-.+|+.+ ..+++.- +.+
T Consensus 40 iv~~~i~~i~~~gl~---eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~dvh~va~lLK~fLreLPePL----l~~ 112 (229)
T 3iug_A 40 VLQSCTAFIERYGIV---DGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPL----LTY 112 (229)
T ss_dssp HHHHHHHHHHHHCCS---TTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTTCHHHHHHHHHHHHHHCSSCT----TCT
T ss_pred HHHHHHHHHHHcCCC---CCCeecCCcHHHHHHHHHHHhcCCCCCccccccccchHHHHHHHHHHHHHCCCCC----cCH
Confidence 677788999998861 222233333334788888887763 1 1232333222 2333332 222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001163 75 EIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLL 119 (1134)
Q Consensus 75 ~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1134)
.+| ..|++.....+..+.+..++.-+.-|. +..+.-|.+|+
T Consensus 113 ~ly-~~~~~~~~~~~~~~~~~~l~~ll~~LP---~~n~~~L~~L~ 153 (229)
T 3iug_A 113 QLY-EKFSDAVSAATDEERLIKIHDVIQQLP---PPHYRTLEFLM 153 (229)
T ss_dssp TTH-HHHHHHHTSSSHHHHHHHHHHHHTTSC---HHHHHHHHHHH
T ss_pred HHH-HHHHHHHHcCCHHHHHHHHHHHHHHCC---HHHHHHHHHHH
Confidence 233 346677776666666666766555443 33334444443
No 414
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=26.75 E-value=3.1e+02 Score=24.87 Aligned_cols=48 Identities=10% Similarity=0.006 Sum_probs=24.1
Q ss_pred HHHhhhcC-HHHHHHHHHHhcCCCcc-H----HHHHHHhhcccHHHHHHHHccc
Q 001163 13 LQFLDEEK-FKETVHKLEQDSGFFFN-M----RYFEDMVTNGEWDEVEKYLSGF 60 (1134)
Q Consensus 13 ~q~L~~~g-~~~s~~~l~~Esg~~~~-~----~~~~~~i~~g~w~~~~~~l~~~ 60 (1134)
...+...| |.++...+++=-.+..+ . ..=.-....|+|++|+..+...
T Consensus 12 G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~ 65 (184)
T 3vtx_A 12 GDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKF 65 (184)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33344444 66666666654333332 1 1112234567777777766655
No 415
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=26.66 E-value=1.8e+02 Score=31.86 Aligned_cols=96 Identities=11% Similarity=-0.009 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHhcCCCc-----c---H-----HHHHHHhhcccHHHHHHHHcccC-----cccCCc
Q 001163 6 RELVFLILQFLDEEKFKETVHKLEQDSGFFF-----N---M-----RYFEDMVTNGEWDEVEKYLSGFT-----KVDDNR 67 (1134)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~l~~Esg~~~-----~---~-----~~~~~~i~~g~w~~~~~~l~~~~-----~~~~~~ 67 (1134)
+++++.|.++-..--|.++...+++--.+.. + + ....-....|+|++|+.+..+.- .++. .
T Consensus 288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~-~ 366 (429)
T 3qwp_A 288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG-S 366 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS-S
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC-C
Confidence 3556665555555456666665555443322 1 1 11223445789999988877641 1111 1
Q ss_pred cchhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccc
Q 001163 68 YSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVF 104 (1134)
Q Consensus 68 ~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~ 104 (1134)
.+. +...++..--+ +..+|++++|+.++++.+.-+
T Consensus 367 Hp~-~a~~l~nLa~~-~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 367 HPV-RGVQVMKVGKL-QLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp CHH-HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHH
T ss_pred ChH-HHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHH
Confidence 111 22333333222 444788888888888766554
No 416
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=26.58 E-value=2.7e+02 Score=22.99 Aligned_cols=93 Identities=10% Similarity=0.094 Sum_probs=50.0
Q ss_pred HHHHHHhhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHHcccCcc-cCCccchhHHHHHHHHHHHH
Q 001163 10 FLILQFLDEEKFKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGFTKV-DDNRYSMKIFFEIRKQKYLE 83 (1134)
Q Consensus 10 ~li~q~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~-~~~~~~~~~~~~i~~~~~lE 83 (1134)
.+-..++...-|.++...+++-.....+ ...-.-....|+|++|+.++.+.... +...........++-..-.-
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 88 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHH
Confidence 3444444445577777777664333221 12223345689999999988776222 11110000112222223333
Q ss_pred HHhcCCHHHHHHHHHhhcc
Q 001163 84 ALDKRDRAKAVEILVKDLK 102 (1134)
Q Consensus 84 ll~~~~~~~a~~~l~~~l~ 102 (1134)
+...++.++|+..+++-+.
T Consensus 89 ~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 89 YFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 4567999999999987544
No 417
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=26.49 E-value=2.3e+02 Score=33.67 Aligned_cols=108 Identities=8% Similarity=0.066 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHhhhcC-HHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHH
Q 001163 5 SRELVFLILQFLDEEK-FKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRK 78 (1134)
Q Consensus 5 ~~e~~~li~q~L~~~g-~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~ 78 (1134)
..|....+...+.++| |.+|...+++=-.+..+ ...=.-....|++++|+..+.+.-.+..+. ...+-
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~------~~a~~ 81 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF------ADAYS 81 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Confidence 3455566666666766 67777766664443333 111122345688888888776652222211 11122
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001163 79 QKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLL 119 (1134)
Q Consensus 79 ~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1134)
..=.=+.+.|+.++|+..+++.++ +.+.+.+-+..|..++
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~-l~P~~~~a~~~Lg~~~ 121 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQ-INPAFADAHSNLASIH 121 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHH
Confidence 222234456777777777776433 1112334444554443
No 418
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=25.59 E-value=1.6e+02 Score=25.04 Aligned_cols=89 Identities=11% Similarity=-0.086 Sum_probs=54.1
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHH
Q 001163 8 LVFLILQFLDEEKFKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYL 82 (1134)
Q Consensus 8 ~~~li~q~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~l 82 (1134)
...+-..++...-|.++...+++=.....+ ...=.-....|++++|+..+.+...+..... . ..+ ..-.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-~-~~~----~la~ 93 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI-A-VHA----ALAV 93 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-H-HHH----HHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-H-HHH----HHHH
Confidence 345556666666688888888776554443 1112234568999999999987633332221 1 211 2222
Q ss_pred HHHhcCCHHHHHHHHHhhcc
Q 001163 83 EALDKRDRAKAVEILVKDLK 102 (1134)
Q Consensus 83 Ell~~~~~~~a~~~l~~~l~ 102 (1134)
-+...|+.++|+..+++-+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 23456889999999987544
No 419
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=25.49 E-value=2.9e+02 Score=26.32 Aligned_cols=108 Identities=13% Similarity=0.008 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhhcC-HHHHHHHHHHhcCCCcc---H--HHHHHHhhc-----------ccHHHHHHHHcccCcccCCcc
Q 001163 6 RELVFLILQFLDEEK-FKETVHKLEQDSGFFFN---M--RYFEDMVTN-----------GEWDEVEKYLSGFTKVDDNRY 68 (1134)
Q Consensus 6 ~e~~~li~q~L~~~g-~~~s~~~l~~Esg~~~~---~--~~~~~~i~~-----------g~w~~~~~~l~~~~~~~~~~~ 68 (1134)
.+....+...+...| |.++...+++=..+..+ . ..=.-.... |++++|+..+.+...+.....
T Consensus 39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~ 118 (217)
T 2pl2_A 39 PEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA 118 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccH
Confidence 344444555555555 67777777664443332 1 111112223 999999999987633322211
Q ss_pred chhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcc
Q 001163 69 SMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTL 121 (1134)
Q Consensus 69 ~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1134)
. .. -..=.=+...|+.++|+..+++-+.-- .+++-+..|..++..
T Consensus 119 -~-~~----~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~ 163 (217)
T 2pl2_A 119 -P-LH----LQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLS 163 (217)
T ss_dssp -H-HH----HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHH
T ss_pred -H-HH----HHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHH
Confidence 1 11 122223456799999999999866533 356666667666543
No 420
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=24.96 E-value=7.9e+02 Score=27.78 Aligned_cols=291 Identities=11% Similarity=0.072 Sum_probs=140.5
Q ss_pred cCCCeeEEEEcCCCCeEEEEEeCCCc----------------------------EEEEecCCccceeeeceeeeeccccC
Q 001163 355 QGSAVKSMDFHPVQQILLVVGTNMGD----------------------------VMLWEVGSRERIAVKSFKVWELGACS 406 (1134)
Q Consensus 355 h~~~V~~v~fsp~g~~lla~gs~dg~----------------------------v~iwd~~~~~~~~~~~~~~~~~~~~~ 406 (1134)
|-..+....|.-||+.=+++...+|+ +.|+|=.+|+.+....+. ....
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~---p~rg- 252 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFE---PARG- 252 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECS---SCCC-
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCC---CCCC-
Confidence 34567888888899866677777776 677777777766542211 0000
Q ss_pred ccccc-cccccCCCC--EEEEEEcC-CCCEEEEEe---CCCEEEEEEccCCceeeeeeeeecC-----------CCCEEE
Q 001163 407 MPLQA-SLSSDYTAS--VNRVMWSP-DGTLFGVAY---SKHIVHLYTYHGGDELRNHLEIEAH-----------VGSVND 468 (1134)
Q Consensus 407 ~~~~~-~~~~~h~~~--V~~l~~sp-d~~~las~s---~dg~v~iwd~~~~~~~~~~~~l~~h-----------~~~V~~ 468 (1134)
.... .--.++... ..++++-. +...++.+- ....|..||...++... .-.+..- ...+..
T Consensus 253 -~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~-~W~~d~~~~~~~~~~gqg~h~~~v 330 (591)
T 2zux_A 253 -NVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSK-LWTLDSSKSGNEAFAGQGNHNLSI 330 (591)
T ss_dssp -CGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEE-EEEEETTSTTCGGGSSCCCSCCEE
T ss_pred -cccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEE-EEEecCCCCCcccccccCCCCCee
Confidence 0000 000011111 22233221 212233321 12347778877765322 1112110 013444
Q ss_pred EEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe-cCCCcCEEEEeccccCCccEEEEecCCC----cEEEEecCCCCc
Q 001163 469 LAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EGHESPVYSICPHHKENIQFIFSTATDG----KIKAWLYDNLGS 543 (1134)
Q Consensus 469 v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~dg----~i~vwd~~~~~~ 543 (1134)
..+.-||+. -|+.|+. ++| ..|+.+... .+|...+....|.|+..|.-++.+.+++ -..+.|..+++.
T Consensus 331 aDVDgDG~d-EIv~Gs~-----~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~v 403 (591)
T 2zux_A 331 ADVDGDGKD-EIIFGSM-----AVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKI 403 (591)
T ss_dssp ECCSSSSSC-EEEETTE-----EEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCE
T ss_pred EeCCCCCCc-eEEEeee-----EEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcE
Confidence 455667766 4555542 345 456655544 3788888877888776666777776652 344577777776
Q ss_pred eeeecCC--CCCeeEEEECcCCC--EEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC
Q 001163 544 RVDYDAP--GHSSTMMAYSADGA--RLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE 619 (1134)
Q Consensus 544 ~~~~~~~--~~~v~~~~~s~~~~--~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 619 (1134)
+...... .+......|.|+.. .+.+ + -.+++.. |+.+.... ....-..+-|..|...-+.- .
T Consensus 404 lw~~~~~~d~Gr~~~~Didp~~pG~E~w~---~------~~l~~~~-G~~i~~~~--p~~~N~~i~WdGDl~relld--~ 469 (591)
T 2zux_A 404 LWGVYAGKDVGRGMAADIDPRYPGQEVWA---N------GSLYSAK-GVKIGSGV--PSSTNFGIWWDGDLLREQLD--S 469 (591)
T ss_dssp EEEECCSSCCCCEEEECCCTTSSSCEEEE---T------TEEECTT-SCBCSSCC--CSCCSEEECCSSSSSCEEEE--T
T ss_pred EEEcCCCCCCCceeEEecCCCCCceEEEe---c------CceECCC-CCEecCCC--CCCcceeEEECCCCcHhhhC--C
Confidence 6655432 22333334445432 1111 0 1245533 33332210 01112345666665332222 3
Q ss_pred CeEEEEEcCCCceeEEEecCC-----CCCCcceEEEcC--CC--cEEEEEECCCcEEEEEcc
Q 001163 620 FMIKFWDMDNVNLLASIDADG-----GLQASPCIRFNK--EG--ILLAVSTNDNGIKILANA 672 (1134)
Q Consensus 620 g~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~sp--~~--~~l~~~~~dg~i~iw~~~ 672 (1134)
+.|.-|+...++....+...+ ....-.|+...- |. +.|.-..++..++||...
T Consensus 470 ~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~ 531 (591)
T 2zux_A 470 NRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTT 531 (591)
T ss_dssp TEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCC
T ss_pred ceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEeCC
Confidence 478889988776444444322 112223444433 22 334334455679999764
No 421
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=24.92 E-value=1.7e+02 Score=28.35 Aligned_cols=84 Identities=15% Similarity=0.328 Sum_probs=45.6
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHhcCCCc------cHHHHHHHhhccc--------H---HHHHHHHccc-CcccCCccc
Q 001163 8 LVFLILQFLDEEKFKETVHKLEQDSGFFF------NMRYFEDMVTNGE--------W---DEVEKYLSGF-TKVDDNRYS 69 (1134)
Q Consensus 8 ~~~li~q~L~~~g~~~s~~~l~~Esg~~~------~~~~~~~~i~~g~--------w---~~~~~~l~~~-~~~~~~~~~ 69 (1134)
++.-+++||++.|+. +-||.- +++.+++.+-.|+ | ..+-.+|+.+ ..+++.-
T Consensus 38 ~v~~~i~~l~~~gl~--------~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~dvh~va~lLK~flreLPePL-- 107 (214)
T 3byi_A 38 FVKQCIEAVEKRGLD--------VDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPL-- 107 (214)
T ss_dssp HHHHHHHHHHHHTTT--------STTTTTSCCCHHHHHHHHHHHHTTCCCCTTSGGGCSHHHHHHHHHHHHHHSSSCS--
T ss_pred HHHHHHHHHHHhCCC--------CCCccccCCCHHHHHHHHHHHhcCCCCCCCcccccchHHHHHHHHHHHHhCCCCC--
Confidence 566677888877753 224432 2677777776653 2 1222333322 3444433
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccc
Q 001163 70 MKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVF 104 (1134)
Q Consensus 70 ~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~ 104 (1134)
+.+.+|+ .|++.....+..+.+..++.-+.-|
T Consensus 108 --l~~~l~~-~~~~~~~~~~~~~~~~~l~~ll~~L 139 (214)
T 3byi_A 108 --FPYSFFE-QFVEAIKKQDNNTRIEAVKSLVQKL 139 (214)
T ss_dssp --SCHHHHH-HHHHHHTSSSHHHHHHHHHHHHHHS
T ss_pred --CCHHHHH-HHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3455554 4777777666666666666544433
No 422
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=24.79 E-value=2.8e+02 Score=22.56 Aligned_cols=86 Identities=16% Similarity=0.251 Sum_probs=44.9
Q ss_pred HHHHHhhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHHHHH
Q 001163 11 LILQFLDEEKFKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEAL 85 (1134)
Q Consensus 11 li~q~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll 85 (1134)
+...++...-|.++...+++-.....+ ...-.-....|++++|+.++.+........ ....+.+ -.-+.
T Consensus 15 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l----a~~~~ 88 (125)
T 1na0_A 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNL----GNAYY 88 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH----HHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc--HHHHHHH----HHHHH
Confidence 333444444577776666654332221 222334456789999988887662222111 1111111 12233
Q ss_pred hcCCHHHHHHHHHhhcc
Q 001163 86 DKRDRAKAVEILVKDLK 102 (1134)
Q Consensus 86 ~~~~~~~a~~~l~~~l~ 102 (1134)
..++.++|+..+++-+.
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 56888888888876443
No 423
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=24.56 E-value=2.6e+02 Score=23.66 Aligned_cols=86 Identities=8% Similarity=-0.112 Sum_probs=47.5
Q ss_pred HHHHHHhhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHHHH
Q 001163 10 FLILQFLDEEKFKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84 (1134)
Q Consensus 10 ~li~q~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEl 84 (1134)
.+-..++...-|.++...+++=..+..+ ...=.-....|+|++|+..+.....+..... . ..+ ..-.-+
T Consensus 14 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-~-~~~----~l~~~~ 87 (137)
T 3q49_B 14 EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV-K-AHF----FLGQCQ 87 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-H-HHH----HHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH-H-HHH----HHHHHH
Confidence 3444444555578887777664333322 1222334568999999988877633322211 1 111 122223
Q ss_pred HhcCCHHHHHHHHHhhc
Q 001163 85 LDKRDRAKAVEILVKDL 101 (1134)
Q Consensus 85 l~~~~~~~a~~~l~~~l 101 (1134)
...|+.++|+..+++-+
T Consensus 88 ~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 88 LEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 45688899988888643
No 424
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=24.19 E-value=3.9e+02 Score=25.41 Aligned_cols=106 Identities=6% Similarity=-0.043 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhhcC-HHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHH
Q 001163 7 ELVFLILQFLDEEK-FKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1134)
Q Consensus 7 e~~~li~q~L~~~g-~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 80 (1134)
++...+...+...| |.++...+++-.....+ ...-.-....|++++|+.++.+........ . .++...
T Consensus 58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~----~~~~~~ 131 (243)
T 2q7f_A 58 IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN--G----DLFYML 131 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS--H----HHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC--H----HHHHHH
Confidence 33334444444444 56665555543222211 122233456788888888777652222211 0 111112
Q ss_pred HHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001163 81 YLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLL 119 (1134)
Q Consensus 81 ~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1134)
-.-++..|+.++|+..+++.+.-. ..+...+..+..++
T Consensus 132 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 132 GTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCL 169 (243)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 222345678888888887654321 12334444444443
No 425
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=24.15 E-value=3.9e+02 Score=31.69 Aligned_cols=107 Identities=7% Similarity=0.030 Sum_probs=63.6
Q ss_pred HHHHHHHHhhhcC-HHHHHHHHHHhcCCCcc-H----HHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHH
Q 001163 8 LVFLILQFLDEEK-FKETVHKLEQDSGFFFN-M----RYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1134)
Q Consensus 8 ~~~li~q~L~~~g-~~~s~~~l~~Esg~~~~-~----~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1134)
...-+...|.++| |.++.+.+++=-.+..+ . ..=.-....|++++|+..+.+.-.+.... ...+-..=
T Consensus 45 a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~------~~a~~~Lg 118 (723)
T 4gyw_A 45 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF------ADAHSNLA 118 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Confidence 3334455555665 77887777765544443 1 11122456799999999998763333221 11222222
Q ss_pred HHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcc
Q 001163 82 LEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTL 121 (1134)
Q Consensus 82 lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1134)
.=+.+.|+.++|+..+++.|+ +.+.+.+-+..|..++..
T Consensus 119 ~~~~~~g~~~eAi~~~~~Al~-l~P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 119 SIHKDSGNIPEAIASYRTALK-LKPDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HCSCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH-hCCCChHHHhhhhhHHHh
Confidence 334567999999999998654 222356777777777654
No 426
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=24.11 E-value=1.6e+02 Score=24.80 Aligned_cols=72 Identities=8% Similarity=0.011 Sum_probs=44.5
Q ss_pred HHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcc
Q 001163 43 DMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTL 121 (1134)
Q Consensus 43 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1134)
.....|+|++|+..+.+.-.+.... ..++-..-.-++..|+.++|+..+++-+.- .+.+..-+..+..++..
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 13 EYFTKSDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHH
Confidence 3567899999999998763332221 122333333455679999999999986542 22345556666665543
No 427
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=24.10 E-value=43 Score=19.45 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHhhh
Q 001163 5 SRELVFLILQFLDE 18 (1134)
Q Consensus 5 ~~e~~~li~q~L~~ 18 (1134)
-+||++||-||-..
T Consensus 4 MkDvlql~qQy~qs 17 (26)
T 1kdl_A 4 MKDVLRLIEQYVSS 17 (26)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 36888888887654
No 428
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.99 E-value=1.9e+02 Score=25.03 Aligned_cols=76 Identities=12% Similarity=0.038 Sum_probs=41.2
Q ss_pred HHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhc
Q 001163 41 FEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120 (1134)
Q Consensus 41 ~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1134)
=......|+|++|+.++.+......... ....++...-.-+...+++++|+..+++-+.- .+.+..-+..+..++.
T Consensus 35 a~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~ 110 (148)
T 2dba_A 35 GNELFKCGDYGGALAAYTQALGLDATPQ---DQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGGDVKALYRRSQALE 110 (148)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHTSCCCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHcccch---HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CccCHHHHHHHHHHHH
Confidence 3445678888888888877633322210 11222222333345678888888888865442 1223444555555443
No 429
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=23.84 E-value=12 Score=31.60 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCccHHHHHHHhhcccHHHHHHHHccc
Q 001163 23 ETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60 (1134)
Q Consensus 23 ~s~~~l~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~~ 60 (1134)
..+..+-+|||+..++..+-..| +|+||++.+.++++
T Consensus 36 a~~i~vi~~sGL~y~~~pmgT~I-EGe~devm~vvk~~ 72 (106)
T 1vk8_A 36 DRAIEKISSWGMKYEVGPSNTTV-EGEFEEIMDRVKEL 72 (106)
T ss_dssp HHHHHHHHTTCSCEEECSSCEEE-EECHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEeCCCccEE-EcCHHHHHHHHHHH
Confidence 34445556899998877776666 59999999988765
No 430
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=23.81 E-value=3.4e+02 Score=27.37 Aligned_cols=95 Identities=8% Similarity=0.021 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHhcCCCcc---H----HH----HHHHhhcccHHHHHHHHccc-CcccCCccchhHHH
Q 001163 7 ELVFLILQFLDEEKFKETVHKLEQDSGFFFN---M----RY----FEDMVTNGEWDEVEKYLSGF-TKVDDNRYSMKIFF 74 (1134)
Q Consensus 7 e~~~li~q~L~~~g~~~s~~~l~~Esg~~~~---~----~~----~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~ 74 (1134)
++...+..++....|.++...+++.-..... . .. -.-....|++++|+.++.+. .......... ...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY-QNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT-HHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH-HHH
Confidence 3456677777778888888877654432221 0 00 11134568999999987654 1111111111 234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 001163 75 EIRKQKYLEALDKRDRAKAVEILVKDLK 102 (1134)
Q Consensus 75 ~i~~~~~lEll~~~~~~~a~~~l~~~l~ 102 (1134)
.++-..-.-+...+++++|+..+.+.+.
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~ 183 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556666667778999999999998663
No 431
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=23.80 E-value=1.4e+02 Score=26.86 Aligned_cols=83 Identities=12% Similarity=0.083 Sum_probs=47.3
Q ss_pred HHhhhcCHHHHHHHHHHhcCCCcc-HHH----HHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHHHHHhcC
Q 001163 14 QFLDEEKFKETVHKLEQDSGFFFN-MRY----FEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKR 88 (1134)
Q Consensus 14 q~L~~~g~~~s~~~l~~Esg~~~~-~~~----~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~ 88 (1134)
.++...-|.++...+++=..+..+ ... =.-....|++++|+..+.+...+.... .. ..| ..=.=++..|
T Consensus 45 ~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~-~~-~~~----~lg~~~~~lg 118 (151)
T 3gyz_A 45 DFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND-YT-PVF----HTGQCQLRLK 118 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC-CH-HHH----HHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC-cH-HHH----HHHHHHHHcC
Confidence 333344477777777765554443 221 233556788888888887663333222 11 222 2233345678
Q ss_pred CHHHHHHHHHhhcc
Q 001163 89 DRAKAVEILVKDLK 102 (1134)
Q Consensus 89 ~~~~a~~~l~~~l~ 102 (1134)
+.++|+..+++-+.
T Consensus 119 ~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 119 APLKAKECFELVIQ 132 (151)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888887544
No 432
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=22.92 E-value=1.6e+02 Score=25.79 Aligned_cols=72 Identities=10% Similarity=0.048 Sum_probs=43.4
Q ss_pred HHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhc
Q 001163 42 EDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120 (1134)
Q Consensus 42 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1134)
......|+|++|+.++.+......... . +.+ ..=.=+...|++++|+..+++-+.- .+.++.-+..+..++.
T Consensus 26 ~~~~~~g~~~~A~~~~~~al~~~p~~~-~-~~~----~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 26 FNQYQAGKWDDAQKIFQALCMLDHYDA-R-YFL----GLGACRQSLGLYEQALQSYSYGALM-DINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH-H-HHH----HHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHHhCCccH-H-HHH----HHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHH
Confidence 345678999999999987733322221 1 111 1222245679999999999985442 2235555556665554
No 433
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=22.76 E-value=4e+02 Score=26.95 Aligned_cols=89 Identities=10% Similarity=-0.018 Sum_probs=41.0
Q ss_pred HHHHHHHHhhhcC--HHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHH
Q 001163 8 LVFLILQFLDEEK--FKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1134)
Q Consensus 8 ~~~li~q~L~~~g--~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 80 (1134)
+...+...+...| +.++...+++-.....+ ...-.-....|++++|+..+.+......... . ..+. .
T Consensus 92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~-~~~~----l 165 (330)
T 3hym_B 92 SWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH-L-PMLY----I 165 (330)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS-H-HHHH----H
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH-H-HHHH----H
Confidence 3334444444544 45555555554443332 1222334455677777666655422211110 0 1111 2
Q ss_pred HHHHHhcCCHHHHHHHHHhhcc
Q 001163 81 YLEALDKRDRAKAVEILVKDLK 102 (1134)
Q Consensus 81 ~lEll~~~~~~~a~~~l~~~l~ 102 (1134)
-.-+...++.++|+..+++-+.
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 2223446777777777776443
No 434
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=22.76 E-value=3.2e+02 Score=22.72 Aligned_cols=90 Identities=9% Similarity=0.084 Sum_probs=45.9
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHhcCCCc------c--HHHHHHHhhcccHHHHHHHHcccCcc-cCCccchhHHHHHHHH
Q 001163 9 VFLILQFLDEEKFKETVHKLEQDSGFFF------N--MRYFEDMVTNGEWDEVEKYLSGFTKV-DDNRYSMKIFFEIRKQ 79 (1134)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~l~~Esg~~~------~--~~~~~~~i~~g~w~~~~~~l~~~~~~-~~~~~~~~~~~~i~~~ 79 (1134)
..+-..++...-|.++...+++=..... + ...=......|+|++|+..+...... ++........|.+-
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la-- 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG-- 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH--
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH--
Confidence 3444555555667777776665322111 1 11223355678888888888766222 22211111222211
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcc
Q 001163 80 KYLEALDKRDRAKAVEILVKDLK 102 (1134)
Q Consensus 80 ~~lEll~~~~~~~a~~~l~~~l~ 102 (1134)
.=+...|+.++|+..+++-+.
T Consensus 84 --~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 84 --LSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp --HHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHcCCHHHHHHHHHHHHH
Confidence 112346888888888876443
No 435
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=22.62 E-value=7.2e+02 Score=27.67 Aligned_cols=40 Identities=8% Similarity=0.040 Sum_probs=20.7
Q ss_pred HHHHHHHHH--HhcCCCccH----HHHHHHhhcccHHHHHHHHccc
Q 001163 21 FKETVHKLE--QDSGFFFNM----RYFEDMVTNGEWDEVEKYLSGF 60 (1134)
Q Consensus 21 ~~~s~~~l~--~Esg~~~~~----~~~~~~i~~g~w~~~~~~l~~~ 60 (1134)
+.++.+.|+ ++.|+..+. .-+......|++++|++++..+
T Consensus 121 ~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 121 PEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 444444443 244565552 2344455666666666666655
No 436
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.59 E-value=3.6e+02 Score=22.98 Aligned_cols=104 Identities=12% Similarity=0.049 Sum_probs=60.0
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHhcCCCccH--------HHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHH
Q 001163 8 LVFLILQFLDEEKFKETVHKLEQDSGFFFNM--------RYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQ 79 (1134)
Q Consensus 8 ~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~--------~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~ 79 (1134)
...+-..++...-|.++...+++--....+. ..=......|+|++|+.++.+...+.... ..+.+.
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~---- 104 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD--VKALYR---- 104 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC--HHHHHH----
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC--HHHHHH----
Confidence 3445555666666889988888766554431 11233567899999999998763332221 112221
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHH
Q 001163 80 KYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQL 118 (1134)
Q Consensus 80 ~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l 118 (1134)
.-.=+...++.++|+..+++-+.- .+.+++....+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL-EPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHH
Confidence 112234568999999999975542 22234444444443
No 437
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=22.23 E-value=2.2e+02 Score=21.82 Aligned_cols=68 Identities=18% Similarity=0.281 Sum_probs=37.2
Q ss_pred HhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHH
Q 001163 44 MVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQL 118 (1134)
Q Consensus 44 ~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l 118 (1134)
....|+|++|+.++.+........ ....+ ..-.-+...++.++|+..+++-+.- .+.+.+-+..|..+
T Consensus 19 ~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~----~l~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 19 YYKQGDYDEAIEYYQKALELDPNN--AEAWY----NLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC--HHHHH----HHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcCCCC--HHHHH----HHHHHHHHHhhHHHHHHHHHHHHhc-CCCCHHHHHHHHHH
Confidence 456789999998887662222211 11212 1222234578999999999875442 11234444444433
No 438
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=21.65 E-value=59 Score=31.37 Aligned_cols=84 Identities=10% Similarity=0.326 Sum_probs=45.4
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHhcCCCc------cHHHHHHHhhccc----HH------HHHHHHccc-CcccCCccch
Q 001163 8 LVFLILQFLDEEKFKETVHKLEQDSGFFF------NMRYFEDMVTNGE----WD------EVEKYLSGF-TKVDDNRYSM 70 (1134)
Q Consensus 8 ~~~li~q~L~~~g~~~s~~~l~~Esg~~~------~~~~~~~~i~~g~----w~------~~~~~l~~~-~~~~~~~~~~ 70 (1134)
++.-+++||++.|+. +-||.- +++.+++.+..|. ++ .+-.+|+.+ ..+++.-
T Consensus 20 iv~~~i~~l~~~gl~--------~eGIfR~sG~~~~i~~L~~~~~~~~~~~~~~~~~d~h~va~lLK~flreLpePL--- 88 (201)
T 2ovj_A 20 IVVHCVNEIEQRGLT--------ETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRNLKEPL--- 88 (201)
T ss_dssp HHHHHHHHHHHHTTT--------STTTTTSCCCHHHHHHHHHHHHTTCSCCCGGGCCCHHHHHHHHHHHHHTSSSCT---
T ss_pred HHHHHHHHHHHhCCC--------cCceeeeCCcHHHHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHHhCCCCC---
Confidence 566677888888852 235432 3778888887663 11 122222222 2334332
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccc
Q 001163 71 KIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVF 104 (1134)
Q Consensus 71 ~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~ 104 (1134)
+.+.+|+ .|++.....+..+.+..++.-+.-|
T Consensus 89 -i~~~l~~-~~~~~~~~~~~~~~~~~l~~ll~~L 120 (201)
T 2ovj_A 89 -LTFRLNR-AFMEAAEITDEDNSIAAMYQAVGEL 120 (201)
T ss_dssp -TCTTTHH-HHHHHHHCSSHHHHHHHHHHHHHTS
T ss_pred -CCHHHHH-HHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 2233443 5777777666666666666544444
No 439
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=21.44 E-value=1.8e+02 Score=26.18 Aligned_cols=73 Identities=7% Similarity=-0.066 Sum_probs=45.0
Q ss_pred HHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcc
Q 001163 42 EDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTL 121 (1134)
Q Consensus 42 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1134)
......|+|++|+.++.+...+.... ..++-..-.-++..+++++|+..+++-+.- .+.+..-+..|..++..
T Consensus 19 ~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 19 NAAMARKEYSKAIDLYTQALSIAPAN------PIYLSNRAAAYSASGQHEKAAEDAELATVV-DPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCcC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence 34567899999999998773333221 112222233345679999999999986542 22345666666666543
No 440
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=21.41 E-value=3.7e+02 Score=25.57 Aligned_cols=107 Identities=12% Similarity=-0.014 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhhcC-HHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHH
Q 001163 7 ELVFLILQFLDEEK-FKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1134)
Q Consensus 7 e~~~li~q~L~~~g-~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 80 (1134)
++...+...+...| |.++...+++=.....+ ...-.-....|+|++|+.++.+........ . .++...
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~--~~~~~l 165 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND----T--EARFQF 165 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC----H--HHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc----H--HHHHHH
Confidence 44444555555555 66666666653332221 223344667899999999998763332211 1 111222
Q ss_pred HHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhc
Q 001163 81 YLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120 (1134)
Q Consensus 81 ~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1134)
-.-++..|+.++|+..+++.+.-. ..+..-+..+..+..
T Consensus 166 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 204 (243)
T 2q7f_A 166 GMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYA 204 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 223455789999999998755422 224455555555543
No 441
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=20.72 E-value=56 Score=26.40 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=16.4
Q ss_pred CCcchHHHHHHHHHHhhhc
Q 001163 1 MSSLSRELVFLILQFLDEE 19 (1134)
Q Consensus 1 ~~~~~~e~~~li~q~L~~~ 19 (1134)
|+..++++...|+|||+..
T Consensus 15 ~~~skKrLA~sIIdFL~~s 33 (92)
T 4asv_A 15 MSASKEEIAALIVNYFSSI 33 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 6777899999999999864
No 442
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=20.72 E-value=3.2e+02 Score=22.56 Aligned_cols=89 Identities=15% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHH
Q 001163 8 LVFLILQFLDEEKFKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYL 82 (1134)
Q Consensus 8 ~~~li~q~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~l 82 (1134)
...+..-++...-+.++...+++-.....+ ...-.-....|+|++|+.++.......... ..++...-.
T Consensus 38 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~ 111 (136)
T 2fo7_A 38 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGN 111 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHhhcc
Q 001163 83 EALDKRDRAKAVEILVKDLK 102 (1134)
Q Consensus 83 Ell~~~~~~~a~~~l~~~l~ 102 (1134)
-+...|+.++|+..+++.+.
T Consensus 112 ~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 112 AYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHc
No 443
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=20.66 E-value=61 Score=25.40 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=25.8
Q ss_pred CcchHHHHHHHHHHhhhcCH-HHHHHHHHHhcCCCc
Q 001163 2 SSLSRELVFLILQFLDEEKF-KETVHKLEQDSGFFF 36 (1134)
Q Consensus 2 ~~~~~e~~~li~q~L~~~g~-~~s~~~l~~Esg~~~ 36 (1134)
+.....+...|+..|.+.|| ..+...+.++.|+..
T Consensus 27 ~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~ 62 (76)
T 2k9l_A 27 EGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSV 62 (76)
T ss_dssp CTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCH
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCH
Confidence 44567789999999999998 455566666666654
No 444
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=20.38 E-value=1.2e+02 Score=35.65 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=28.7
Q ss_pred EEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecC
Q 001163 466 VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 505 (1134)
Q Consensus 466 V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 505 (1134)
|.++.+ +.. ++++-+.|+++|+||+.+++++.+..-
T Consensus 224 Is~~~~--~~~--fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF--HER--YLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--TTT--EEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc--CCc--EEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 555444 455 899999999999999999998876643
No 445
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=20.19 E-value=3.3e+02 Score=23.88 Aligned_cols=86 Identities=6% Similarity=-0.040 Sum_probs=49.3
Q ss_pred HHHHHhhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHHHHH
Q 001163 11 LILQFLDEEKFKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEAL 85 (1134)
Q Consensus 11 li~q~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll 85 (1134)
+-..++...-|.++...+++-.....+ ...-.-....|+|++|+.++.+...+.... . ..+-..-.=+.
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~--~~~~~~a~~~~ 92 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----I--KGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----H--HHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----H--HHHHHHHHHHH
Confidence 344455555688888777764433222 222233566899999999987763332221 1 11111122244
Q ss_pred hcCCHHHHHHHHHhhcc
Q 001163 86 DKRDRAKAVEILVKDLK 102 (1134)
Q Consensus 86 ~~~~~~~a~~~l~~~l~ 102 (1134)
..|+.++|+..+++-+.
T Consensus 93 ~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 93 ALGKFRAALRDYETVVK 109 (166)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 57899999999987544
Done!