Query 001164
Match_columns 1134
No_of_seqs 369 out of 378
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 17:35:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001164.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001164hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0107 Alternative splicing f 99.7 3.8E-17 8.2E-22 167.0 6.7 68 569-636 9-79 (195)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 8.9E-16 1.9E-20 168.6 14.6 137 569-714 2-152 (352)
3 TIGR01659 sex-lethal sex-letha 99.6 3.4E-15 7.4E-20 167.9 14.9 141 566-715 103-257 (346)
4 TIGR01628 PABP-1234 polyadenyl 99.6 1.7E-14 3.6E-19 169.6 19.0 144 569-714 87-240 (562)
5 TIGR01628 PABP-1234 polyadenyl 99.6 1.8E-14 3.9E-19 169.3 14.7 136 572-714 2-150 (562)
6 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 3.2E-14 7E-19 165.4 15.9 146 569-714 1-155 (481)
7 TIGR01645 half-pint poly-U bin 99.5 3.7E-14 8E-19 168.8 15.2 147 569-715 106-268 (612)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 1.6E-13 3.5E-18 159.6 16.9 149 566-714 271-457 (481)
9 KOG3671 Actin regulatory prote 99.5 2.6E-12 5.6E-17 147.2 25.9 106 582-713 21-135 (569)
10 KOG1924 RhoA GTPase effector D 99.5 5.8E-14 1.3E-18 165.7 12.3 75 1029-1111 651-736 (1102)
11 TIGR01622 SF-CC1 splicing fact 99.5 1.7E-13 3.7E-18 156.4 14.9 144 568-714 87-249 (457)
12 TIGR01648 hnRNP-R-Q heterogene 99.5 2.2E-13 4.7E-18 161.8 14.1 134 570-714 58-203 (578)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.5 3.2E-13 7E-18 155.9 14.5 148 566-714 171-358 (509)
14 KOG0117 Heterogeneous nuclear 99.5 1.6E-13 3.5E-18 155.3 10.9 137 568-715 81-230 (506)
15 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 1E-12 2.2E-17 144.6 15.8 145 570-714 89-332 (352)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.4 1.4E-12 3.1E-17 150.6 15.8 147 568-714 293-485 (509)
17 TIGR01622 SF-CC1 splicing fact 99.4 1.9E-12 4.1E-17 147.9 15.3 147 568-714 184-431 (457)
18 KOG0144 RNA-binding protein CU 99.3 3.2E-12 7E-17 144.4 9.6 139 570-716 34-188 (510)
19 KOG0148 Apoptosis-promoting RN 99.3 9.7E-12 2.1E-16 134.4 11.7 147 566-714 58-221 (321)
20 TIGR01648 hnRNP-R-Q heterogene 99.3 1.8E-11 4E-16 145.6 14.8 139 568-714 136-290 (578)
21 KOG0105 Alternative splicing f 99.2 4E-11 8.6E-16 124.3 11.5 142 569-713 5-170 (241)
22 PF00076 RRM_1: RNA recognitio 99.2 4.6E-11 1E-15 101.2 7.0 60 573-632 1-65 (70)
23 PLN03134 glycine-rich RNA-bind 99.1 1.7E-10 3.7E-15 115.6 9.8 70 568-637 32-111 (144)
24 KOG0117 Heterogeneous nuclear 99.1 3.6E-10 7.7E-15 128.7 12.6 203 491-717 91-317 (506)
25 KOG0132 RNA polymerase II C-te 99.0 9E-08 2E-12 114.8 26.1 64 569-632 420-483 (894)
26 PF14259 RRM_6: RNA recognitio 98.9 1.9E-09 4E-14 93.1 7.0 59 573-631 1-64 (70)
27 KOG0145 RNA-binding protein EL 98.9 3.8E-09 8.2E-14 114.1 10.8 136 570-714 41-190 (360)
28 smart00362 RRM_2 RNA recogniti 98.9 8.8E-09 1.9E-13 85.2 8.1 60 572-631 1-64 (72)
29 PLN03120 nucleic acid binding 98.8 7.5E-09 1.6E-13 113.0 8.5 62 570-632 4-68 (260)
30 KOG0131 Splicing factor 3b, su 98.8 3.2E-08 6.9E-13 102.9 10.9 140 570-715 9-161 (203)
31 TIGR01659 sex-lethal sex-letha 98.8 1.7E-08 3.7E-13 114.4 8.9 70 570-639 193-274 (346)
32 KOG0106 Alternative splicing f 98.8 1.2E-08 2.6E-13 108.9 6.9 138 571-714 2-154 (216)
33 KOG0113 U1 small nuclear ribon 98.8 1.9E-08 4.2E-13 110.5 8.5 77 554-632 87-169 (335)
34 COG0724 RNA-binding proteins ( 98.7 7.8E-08 1.7E-12 96.9 12.0 113 570-682 115-252 (306)
35 KOG0124 Polypyrimidine tract-b 98.7 2.4E-08 5.1E-13 111.7 6.9 135 570-704 113-263 (544)
36 KOG0123 Polyadenylate-binding 98.7 1.1E-07 2.4E-12 108.8 12.4 128 571-714 2-136 (369)
37 TIGR01645 half-pint poly-U bin 98.7 3.7E-08 8.1E-13 118.4 8.8 64 569-632 203-272 (612)
38 smart00360 RRM RNA recognition 98.6 8.1E-08 1.8E-12 79.0 7.2 58 575-632 1-64 (71)
39 cd00590 RRM RRM (RNA recogniti 98.6 1.2E-07 2.6E-12 78.8 8.1 60 572-631 1-65 (74)
40 KOG0109 RNA-binding protein LA 98.6 6E-08 1.3E-12 106.5 7.5 128 572-714 4-133 (346)
41 PLN03213 repressor of silencin 98.6 6.5E-08 1.4E-12 111.3 7.9 63 570-632 10-76 (759)
42 KOG0148 Apoptosis-promoting RN 98.6 7E-08 1.5E-12 105.2 7.7 63 570-632 164-226 (321)
43 KOG0114 Predicted RNA-binding 98.6 7.4E-08 1.6E-12 92.9 6.6 63 569-631 17-82 (124)
44 KOG0111 Cyclophilin-type pepti 98.6 2.8E-08 6E-13 105.6 4.0 71 569-639 9-89 (298)
45 KOG0122 Translation initiation 98.6 1.1E-07 2.5E-12 102.4 8.3 71 569-639 188-268 (270)
46 PF13893 RRM_5: RNA recognitio 98.6 1.3E-07 2.8E-12 79.4 6.8 46 587-632 1-47 (56)
47 PLN03121 nucleic acid binding 98.5 1.8E-07 3.9E-12 101.3 8.6 67 570-637 5-76 (243)
48 KOG0144 RNA-binding protein CU 98.5 5.1E-08 1.1E-12 111.1 4.6 72 568-639 122-205 (510)
49 KOG0121 Nuclear cap-binding pr 98.5 1.5E-07 3.3E-12 93.6 6.4 70 563-632 29-104 (153)
50 KOG4207 Predicted splicing fac 98.4 1.7E-07 3.8E-12 99.1 5.1 69 571-639 14-92 (256)
51 KOG0125 Ataxin 2-binding prote 98.4 2.7E-07 5.8E-12 102.7 6.6 68 570-637 96-169 (376)
52 KOG1457 RNA binding protein (c 98.4 1.2E-06 2.6E-11 93.7 10.1 145 569-713 33-268 (284)
53 KOG0110 RNA-binding protein (R 98.4 1.4E-06 3.1E-11 104.3 11.4 148 563-713 509-675 (725)
54 KOG1924 RhoA GTPase effector D 98.4 1.4E-06 3E-11 104.9 10.2 24 983-1006 625-648 (1102)
55 KOG0151 Predicted splicing reg 98.3 9E-07 1.9E-11 105.7 6.8 72 561-632 164-245 (877)
56 KOG4206 Spliceosomal protein s 98.3 1.1E-05 2.3E-10 86.7 13.4 147 564-713 3-203 (221)
57 KOG0146 RNA-binding protein ET 98.2 1.7E-06 3.7E-11 94.4 5.4 61 569-629 18-83 (371)
58 KOG0112 Large RNA-binding prot 98.2 7.4E-07 1.6E-11 108.6 2.5 141 565-714 367-512 (975)
59 KOG4660 Protein Mei2, essentia 98.1 2.4E-06 5.3E-11 100.3 4.3 68 568-635 73-143 (549)
60 smart00361 RRM_1 RNA recogniti 98.1 7.7E-06 1.7E-10 72.3 6.4 49 584-632 2-63 (70)
61 KOG0153 Predicted RNA-binding 98.0 6.6E-06 1.4E-10 92.5 6.7 64 569-632 227-290 (377)
62 KOG0109 RNA-binding protein LA 98.0 4.8E-06 1E-10 92.0 5.0 63 568-632 76-138 (346)
63 KOG0149 Predicted RNA-binding 98.0 7.3E-06 1.6E-10 88.5 5.9 57 571-627 13-75 (247)
64 KOG0123 Polyadenylate-binding 98.0 3E-05 6.5E-10 89.2 9.9 177 522-714 41-229 (369)
65 KOG4205 RNA-binding protein mu 97.9 1.2E-05 2.6E-10 90.5 5.6 134 569-707 5-153 (311)
66 PHA03247 large tegument protei 97.9 0.00017 3.7E-09 95.8 16.2 19 984-1002 2958-2976(3151)
67 KOG0108 mRNA cleavage and poly 97.9 2.2E-05 4.8E-10 91.8 7.4 62 571-632 19-86 (435)
68 KOG0147 Transcriptional coacti 97.8 7.2E-05 1.6E-09 88.2 10.7 59 573-631 281-345 (549)
69 KOG0130 RNA-binding protein RB 97.8 2.8E-05 6.2E-10 78.4 6.0 65 573-637 75-149 (170)
70 KOG0127 Nucleolar protein fibr 97.8 8.9E-05 1.9E-09 87.4 10.7 146 571-716 6-181 (678)
71 KOG0126 Predicted RNA-binding 97.7 6.8E-06 1.5E-10 86.0 -1.2 66 567-632 32-103 (219)
72 KOG0145 RNA-binding protein EL 97.6 0.00022 4.7E-09 78.2 9.7 147 571-717 128-344 (360)
73 KOG0132 RNA polymerase II C-te 97.5 0.0082 1.8E-07 73.8 21.7 63 653-717 419-481 (894)
74 KOG0147 Transcriptional coacti 97.5 0.00011 2.4E-09 86.7 5.9 140 570-715 179-342 (549)
75 PF07744 SPOC: SPOC domain; I 97.5 5.4E-06 1.2E-10 79.2 -4.7 112 989-1101 1-119 (119)
76 PHA03247 large tegument protei 97.5 0.0012 2.6E-08 88.3 14.6 27 168-194 1761-1788(3151)
77 KOG1190 Polypyrimidine tract-b 97.4 0.00073 1.6E-08 77.9 10.9 144 569-713 296-472 (492)
78 KOG4208 Nucleolar RNA-binding 97.4 0.0003 6.5E-09 75.1 6.6 72 569-640 48-130 (214)
79 KOG3671 Actin regulatory prote 97.4 0.0017 3.6E-08 76.5 12.8 56 563-628 81-137 (569)
80 KOG1457 RNA binding protein (c 97.3 0.00022 4.8E-09 77.0 3.9 65 567-631 207-273 (284)
81 KOG0415 Predicted peptidyl pro 97.2 0.00057 1.2E-08 77.5 6.2 85 554-638 223-317 (479)
82 KOG0120 Splicing factor U2AF, 97.2 0.0013 2.8E-08 78.3 9.4 76 557-632 276-357 (500)
83 KOG0110 RNA-binding protein (R 97.1 0.0016 3.4E-08 79.2 9.5 142 571-714 386-581 (725)
84 KOG0131 Splicing factor 3b, su 97.1 0.00078 1.7E-08 71.0 5.4 68 570-637 96-174 (203)
85 KOG0116 RasGAP SH3 binding pro 97.0 0.0006 1.3E-08 79.8 4.8 60 567-626 285-350 (419)
86 KOG0226 RNA-binding proteins [ 96.9 0.00086 1.9E-08 73.6 4.7 73 559-631 179-257 (290)
87 KOG0127 Nucleolar protein fibr 96.8 0.0021 4.5E-08 76.3 7.1 63 564-626 286-354 (678)
88 KOG1456 Heterogeneous nuclear 96.7 0.0057 1.2E-07 70.1 8.7 135 568-713 29-179 (494)
89 KOG1190 Polypyrimidine tract-b 96.7 0.0024 5.3E-08 73.7 5.8 76 564-639 408-490 (492)
90 KOG4209 Splicing factor RNPS1, 96.7 0.0017 3.7E-08 70.9 4.3 62 570-632 101-168 (231)
91 KOG0124 Polypyrimidine tract-b 96.6 0.0026 5.5E-08 72.6 5.7 62 568-629 208-275 (544)
92 KOG0112 Large RNA-binding prot 96.6 0.002 4.3E-08 79.9 4.7 74 566-639 451-530 (975)
93 KOG4849 mRNA cleavage factor I 96.4 0.098 2.1E-06 60.0 16.4 50 655-704 80-135 (498)
94 KOG0146 RNA-binding protein ET 96.3 0.0041 8.8E-08 68.8 4.5 64 569-632 284-353 (371)
95 KOG0129 Predicted RNA-binding 96.2 0.2 4.4E-06 59.9 17.9 125 554-678 243-393 (520)
96 KOG0533 RRM motif-containing p 96.1 0.0087 1.9E-07 66.0 5.9 59 571-629 84-147 (243)
97 PF00076 RRM_1: RNA recognitio 96.0 0.013 2.8E-07 49.7 5.3 57 658-714 1-60 (70)
98 KOG1830 Wiskott Aldrich syndro 95.9 0.34 7.4E-06 57.0 17.5 17 1092-1108 493-509 (518)
99 PF14259 RRM_6: RNA recognitio 95.9 0.017 3.6E-07 50.0 5.6 56 658-713 1-59 (70)
100 KOG1830 Wiskott Aldrich syndro 95.9 0.16 3.4E-06 59.6 14.8 15 688-702 138-152 (518)
101 KOG4206 Spliceosomal protein s 95.8 0.019 4.2E-07 62.3 6.6 66 567-632 143-209 (221)
102 KOG4454 RNA binding protein (R 95.7 0.0049 1.1E-07 66.8 1.9 65 568-632 7-75 (267)
103 PLN03134 glycine-rich RNA-bind 95.4 0.035 7.6E-07 56.4 6.7 63 652-714 31-97 (144)
104 KOG1923 Rac1 GTPase effector F 95.4 0.043 9.3E-07 67.8 8.5 17 1112-1129 473-489 (830)
105 KOG0107 Alternative splicing f 95.2 0.025 5.3E-07 59.9 5.0 58 655-713 10-67 (195)
106 KOG4211 Splicing factor hnRNP- 95.1 0.24 5.1E-06 59.1 12.8 138 571-714 11-166 (510)
107 KOG4205 RNA-binding protein mu 94.9 0.018 3.9E-07 65.5 3.2 62 569-631 96-163 (311)
108 cd01205 WASP WASP-type EVH1 do 94.8 0.023 4.9E-07 55.7 3.1 42 673-714 58-102 (105)
109 PF04059 RRM_2: RNA recognitio 94.7 0.097 2.1E-06 50.7 7.1 68 572-639 3-86 (97)
110 KOG1923 Rac1 GTPase effector F 94.6 0.1 2.2E-06 64.8 8.6 12 1035-1046 401-412 (830)
111 KOG1548 Transcription elongati 94.1 0.69 1.5E-05 53.5 13.2 144 570-713 134-334 (382)
112 KOG4661 Hsp27-ERE-TATA-binding 94.1 0.07 1.5E-06 64.0 5.7 64 568-631 403-472 (940)
113 KOG0120 Splicing factor U2AF, 94.0 0.11 2.3E-06 62.6 7.0 149 564-713 169-351 (500)
114 KOG4212 RNA-binding protein hn 93.9 0.11 2.5E-06 60.9 6.8 69 558-631 37-111 (608)
115 smart00362 RRM_2 RNA recogniti 93.8 0.17 3.6E-06 41.7 5.8 56 657-714 1-60 (72)
116 KOG1855 Predicted RNA-binding 93.4 0.051 1.1E-06 63.6 2.8 65 569-633 230-313 (484)
117 cd00590 RRM RRM (RNA recogniti 93.2 0.25 5.3E-06 40.9 6.0 58 657-714 1-61 (74)
118 PF08777 RRM_3: RNA binding mo 93.1 0.19 4.1E-06 49.0 5.8 59 571-629 2-60 (105)
119 KOG1548 Transcription elongati 93.0 0.2 4.4E-06 57.6 6.7 47 584-630 290-338 (382)
120 KOG1456 Heterogeneous nuclear 93.0 1.4 3E-05 51.5 13.2 147 570-717 287-471 (494)
121 PF05918 API5: Apoptosis inhib 92.8 0.4 8.7E-06 58.6 9.3 140 55-261 2-141 (556)
122 KOG0106 Alternative splicing f 92.8 0.073 1.6E-06 58.0 2.7 61 570-632 99-159 (216)
123 KOG4574 RNA-binding protein (c 92.2 0.093 2E-06 65.5 3.0 76 564-639 292-373 (1007)
124 KOG2314 Translation initiation 92.1 0.15 3.2E-06 61.6 4.3 70 551-632 57-131 (698)
125 smart00461 WH1 WASP homology r 92.0 0.14 3E-06 49.8 3.3 42 674-715 60-104 (106)
126 KOG0128 RNA-binding protein SA 91.8 0.051 1.1E-06 67.7 0.1 131 558-710 655-794 (881)
127 KOG4212 RNA-binding protein hn 91.8 0.29 6.3E-06 57.7 6.1 70 563-632 529-599 (608)
128 KOG2193 IGF-II mRNA-binding pr 91.7 0.11 2.4E-06 60.7 2.8 132 571-714 2-140 (584)
129 PF14605 Nup35_RRM_2: Nup53/35 91.4 0.36 7.7E-06 41.7 4.9 48 575-623 6-53 (53)
130 KOG4672 Uncharacterized conser 91.4 0.86 1.9E-05 53.6 9.3 10 1064-1073 472-481 (487)
131 PRK15319 AIDA autotransporter- 91.4 0.25 5.4E-06 66.3 5.6 7 657-663 1349-1355(2039)
132 KOG2416 Acinus (induces apopto 90.9 0.14 3E-06 62.1 2.5 62 568-629 442-504 (718)
133 smart00360 RRM RNA recognition 90.4 0.6 1.3E-05 38.1 5.2 55 660-714 1-59 (71)
134 COG0724 RNA-binding proteins ( 90.3 0.52 1.1E-05 47.9 5.7 60 655-714 115-178 (306)
135 KOG1996 mRNA splicing factor [ 90.0 0.46 9.9E-06 53.9 5.3 51 582-632 298-355 (378)
136 PLN03120 nucleic acid binding 89.5 0.68 1.5E-05 52.0 6.2 57 655-711 4-61 (260)
137 KOG0121 Nuclear cap-binding pr 89.3 0.54 1.2E-05 48.1 4.8 65 653-717 34-102 (153)
138 cd00837 EVH1 EVH1 (Enabled, Va 89.2 0.32 7E-06 47.0 3.0 42 674-715 58-102 (104)
139 KOG4672 Uncharacterized conser 88.8 1.6 3.6E-05 51.4 8.7 10 715-724 117-126 (487)
140 KOG0105 Alternative splicing f 88.6 0.38 8.2E-06 51.7 3.3 60 654-713 5-65 (241)
141 cd01207 Ena-Vasp Enabled-VASP- 87.9 0.28 6.1E-06 48.7 1.8 37 679-715 69-105 (111)
142 PF15023 DUF4523: Protein of u 87.2 0.93 2E-05 47.2 5.0 55 577-632 97-151 (166)
143 KOG3152 TBP-binding protein, a 87.1 0.39 8.4E-06 53.6 2.4 62 569-630 73-152 (278)
144 KOG4849 mRNA cleavage factor I 86.8 6.6 0.00014 45.8 11.8 57 573-629 83-147 (498)
145 PF15449 Retinal: Retinal prot 86.6 12 0.00025 49.1 14.8 30 252-281 228-257 (1287)
146 PF04847 Calcipressin: Calcipr 84.3 1.9 4.2E-05 46.2 5.9 58 582-639 7-70 (184)
147 KOG4210 Nuclear localization s 82.5 0.72 1.6E-05 52.2 2.0 69 570-639 185-263 (285)
148 KOG0114 Predicted RNA-binding 82.2 2.3 5.1E-05 42.4 5.0 60 654-713 17-77 (124)
149 PF00568 WH1: WH1 domain; Int 81.8 2.3 5E-05 41.5 4.9 36 680-715 74-109 (111)
150 KOG0119 Splicing factor 1/bran 81.4 28 0.0006 42.6 14.2 23 695-717 206-228 (554)
151 KOG1925 Rac1 GTPase effector F 81.0 2.4 5.2E-05 51.1 5.5 23 1022-1046 307-329 (817)
152 KOG1922 Rho GTPase effector BN 80.4 10 0.00022 48.6 11.2 26 1021-1046 410-438 (833)
153 KOG0108 mRNA cleavage and poly 80.4 2.3 4.9E-05 51.0 5.1 59 656-714 19-81 (435)
154 KOG4676 Splicing factor, argin 78.6 2.1 4.6E-05 50.3 4.1 66 572-637 9-83 (479)
155 KOG1984 Vesicle coat complex C 77.0 90 0.0019 40.8 17.3 17 1000-1016 291-307 (1007)
156 KOG0119 Splicing factor 1/bran 77.0 55 0.0012 40.2 14.8 15 701-715 215-229 (554)
157 KOG2202 U2 snRNP splicing fact 76.9 1.2 2.6E-05 49.8 1.4 46 585-630 83-134 (260)
158 KOG0307 Vesicle coat complex C 76.6 1.2E+02 0.0025 40.5 18.5 11 655-665 495-505 (1049)
159 PRK15313 autotransport protein 76.4 4.3 9.3E-05 52.4 6.1 10 1097-1106 822-831 (955)
160 PF13893 RRM_5: RNA recognitio 74.7 5.3 0.00011 33.6 4.4 40 673-714 2-42 (56)
161 PHA03378 EBNA-3B; Provisional 74.5 81 0.0018 40.2 15.6 10 817-826 661-670 (991)
162 PF03467 Smg4_UPF3: Smg-4/UPF3 74.4 4.2 9E-05 43.1 4.5 62 569-630 6-79 (176)
163 KOG4307 RNA binding protein RB 74.1 8.4 0.00018 48.3 7.5 76 564-639 859-943 (944)
164 PLN03121 nucleic acid binding 73.6 5.6 0.00012 44.5 5.4 55 656-710 6-61 (243)
165 PRK14950 DNA polymerase III su 73.6 17 0.00036 45.1 10.1 19 87-105 42-62 (585)
166 KOG2236 Uncharacterized conser 72.4 8.4 0.00018 46.4 6.8 14 382-395 82-95 (483)
167 PF05518 Totivirus_coat: Totiv 71.4 48 0.001 42.5 13.1 17 542-558 280-296 (759)
168 PLN03213 repressor of silencin 70.9 7.5 0.00016 47.1 5.9 60 654-713 9-70 (759)
169 KOG0115 RNA-binding protein p5 70.8 4.1 8.8E-05 45.9 3.6 60 567-626 28-92 (275)
170 KOG0391 SNF2 family DNA-depend 70.5 43 0.00093 45.0 12.6 20 199-218 1085-1104(1958)
171 PRK15313 autotransport protein 69.8 10 0.00022 49.3 7.1 7 570-576 183-189 (955)
172 PF05172 Nup35_RRM: Nup53/35/4 69.0 9.2 0.0002 37.5 5.2 46 583-629 18-76 (100)
173 PHA03378 EBNA-3B; Provisional 68.5 51 0.0011 41.8 12.2 6 1079-1084 960-965 (991)
174 KOG0566 Inositol-1,4,5-triphos 67.4 35 0.00075 44.6 10.9 48 189-236 94-157 (1080)
175 PF11608 Limkain-b1: Limkain b 65.2 17 0.00036 35.3 5.9 57 572-632 4-65 (90)
176 PRK09752 adhesin; Provisional 63.6 6.6 0.00014 51.9 3.9 11 122-132 50-60 (1250)
177 KOG4590 Signal transduction pr 63.5 18 0.0004 43.3 7.2 17 697-713 77-93 (409)
178 KOG1985 Vesicle coat complex C 61.0 76 0.0016 41.2 12.0 16 1011-1026 244-259 (887)
179 KOG4210 Nuclear localization s 60.9 8.9 0.00019 43.7 3.9 142 568-711 86-245 (285)
180 KOG0566 Inositol-1,4,5-triphos 59.6 80 0.0017 41.6 12.0 47 192-238 89-136 (1080)
181 KOG0153 Predicted RNA-binding 59.3 15 0.00033 43.1 5.4 59 652-712 225-283 (377)
182 PRK09752 adhesin; Provisional 58.9 9 0.00019 50.7 3.9 6 656-661 702-707 (1250)
183 KOG0122 Translation initiation 58.5 21 0.00046 40.3 6.1 60 654-713 188-251 (270)
184 smart00361 RRM_1 RNA recogniti 57.5 17 0.00036 32.3 4.3 45 670-714 3-58 (70)
185 KOG0129 Predicted RNA-binding 56.7 24 0.00052 43.2 6.6 123 554-703 351-486 (520)
186 PRK14950 DNA polymerase III su 56.3 38 0.00083 42.0 8.6 7 987-993 469-475 (585)
187 KOG0162 Myosin class I heavy c 55.9 91 0.002 40.1 11.3 53 571-627 580-639 (1106)
188 COG5175 MOT2 Transcriptional r 55.6 17 0.00037 42.4 5.0 62 570-631 114-190 (480)
189 KOG0415 Predicted peptidyl pro 55.4 18 0.00039 42.6 5.2 62 652-713 236-301 (479)
190 KOG0130 RNA-binding protein RB 54.9 20 0.00043 37.5 4.8 61 654-714 71-135 (170)
191 KOG1365 RNA-binding protein Fu 54.1 1.3E+02 0.0029 36.1 11.7 139 575-713 166-344 (508)
192 KOG0113 U1 small nuclear ribon 53.0 26 0.00055 40.6 5.8 61 653-713 99-163 (335)
193 KOG4660 Protein Mei2, essentia 52.8 24 0.00052 43.5 5.8 65 652-717 72-136 (549)
194 KOG0917 Uncharacterized conser 52.0 56 0.0012 37.6 8.1 19 705-723 49-68 (338)
195 KOG1785 Tyrosine kinase negati 49.9 60 0.0013 39.0 8.2 100 569-678 221-324 (563)
196 KOG0391 SNF2 family DNA-depend 49.9 2.1E+02 0.0044 39.2 13.3 18 101-118 1187-1204(1958)
197 KOG1984 Vesicle coat complex C 47.6 8.4E+02 0.018 32.7 18.3 12 1091-1102 441-452 (1007)
198 KOG4590 Signal transduction pr 47.5 29 0.00063 41.7 5.4 10 1094-1103 338-347 (409)
199 KOG0307 Vesicle coat complex C 47.4 4.1E+02 0.0088 35.9 15.5 7 188-194 314-320 (1049)
200 KOG0151 Predicted splicing reg 47.1 24 0.00052 44.7 4.8 62 654-715 173-241 (877)
201 KOG0111 Cyclophilin-type pepti 45.5 16 0.00036 40.6 2.8 61 653-714 8-73 (298)
202 PLN00131 hypothetical protein; 45.5 40 0.00086 35.9 5.4 55 5-60 89-147 (218)
203 KOG4208 Nucleolar RNA-binding 44.8 37 0.00081 37.5 5.3 64 654-717 48-116 (214)
204 KOG2213 Apoptosis inhibitor 5/ 44.6 27 0.00058 41.8 4.5 90 53-161 2-91 (460)
205 KOG0125 Ataxin 2-binding prote 43.7 35 0.00076 40.0 5.1 59 655-713 96-156 (376)
206 PF08675 RNA_bind: RNA binding 43.3 88 0.0019 30.5 6.8 57 577-635 15-71 (87)
207 KOG0115 RNA-binding protein p5 43.3 54 0.0012 37.4 6.3 75 619-709 7-88 (275)
208 KOG2391 Vacuolar sorting prote 42.6 58 0.0013 38.4 6.6 24 1065-1088 312-335 (365)
209 KOG2591 c-Mpl binding protein, 42.5 51 0.0011 40.9 6.4 69 566-635 171-249 (684)
210 KOG4307 RNA binding protein RB 42.0 3.9E+02 0.0085 34.6 13.6 25 688-712 35-59 (944)
211 KOG0116 RasGAP SH3 binding pro 40.9 40 0.00087 40.7 5.3 55 655-709 288-346 (419)
212 KOG4410 5-formyltetrahydrofola 37.5 51 0.0011 38.1 5.0 52 559-617 326-378 (396)
213 PRK07764 DNA polymerase III su 37.1 2E+02 0.0044 37.7 10.9 18 86-103 40-59 (824)
214 KOG2068 MOT2 transcription fac 36.9 24 0.00052 41.2 2.5 60 570-629 77-148 (327)
215 KOG2236 Uncharacterized conser 36.2 3.1E+02 0.0067 33.9 11.3 12 587-598 247-258 (483)
216 KOG1922 Rho GTPase effector BN 35.1 1.4E+02 0.0031 38.5 9.2 17 586-602 114-130 (833)
217 KOG2891 Surface glycoprotein [ 34.0 12 0.00026 42.7 -0.4 50 582-631 173-247 (445)
218 KOG0686 COP9 signalosome, subu 33.2 19 0.00041 43.3 1.0 109 37-161 111-243 (466)
219 PRK07764 DNA polymerase III su 33.1 3.7E+02 0.0079 35.5 12.2 10 985-994 512-521 (824)
220 PF04059 RRM_2: RNA recognitio 33.0 1.3E+02 0.0028 29.7 6.4 58 657-715 3-67 (97)
221 PLN02805 D-lactate dehydrogena 32.6 90 0.002 38.9 6.6 78 563-640 257-347 (555)
222 KOG1925 Rac1 GTPase effector F 32.2 77 0.0017 39.1 5.6 34 984-1024 284-317 (817)
223 KOG0162 Myosin class I heavy c 32.2 4.8E+02 0.01 34.2 12.3 22 86-108 127-148 (1106)
224 PF01690 PLRV_ORF5: Potato lea 30.1 51 0.0011 40.2 3.9 11 996-1006 37-47 (465)
225 PF08952 DUF1866: Domain of un 30.1 1.1E+02 0.0024 32.3 5.8 45 585-632 51-95 (146)
226 KOG1995 Conserved Zn-finger pr 28.6 84 0.0018 37.2 5.1 66 567-632 63-142 (351)
227 KOG2391 Vacuolar sorting prote 28.6 1.6E+02 0.0034 35.1 7.1 16 818-833 113-128 (365)
228 PF05308 Mito_fiss_reg: Mitoch 28.4 91 0.002 35.4 5.2 7 829-835 73-79 (253)
229 KOG3895 Synaptic vesicle prote 26.1 2.8E+02 0.0062 33.3 8.6 21 584-604 205-229 (488)
230 PF07223 DUF1421: Protein of u 25.5 9.7E+02 0.021 28.9 12.9 19 1082-1100 327-345 (358)
231 smart00498 FH2 Formin Homology 25.2 51 0.0011 39.4 2.7 90 1022-1112 25-135 (432)
232 PF10567 Nab6_mRNP_bdg: RNA-re 24.7 81 0.0018 36.6 4.0 146 570-717 15-215 (309)
233 PF15449 Retinal: Retinal prot 24.3 1.4E+03 0.03 31.5 14.8 18 990-1007 1132-1149(1287)
234 PF01690 PLRV_ORF5: Potato lea 24.1 54 0.0012 40.0 2.6 26 1044-1069 185-210 (465)
235 KOG2675 Adenylate cyclase-asso 23.6 75 0.0016 38.6 3.6 7 660-666 43-49 (480)
236 KOG0905 Phosphoinositide 3-kin 23.6 5.2E+02 0.011 35.6 10.9 9 1096-1104 330-338 (1639)
237 KOG4676 Splicing factor, argin 23.4 17 0.00037 43.3 -1.6 72 557-629 138-211 (479)
238 TIGR03042 PS_II_psbQ_bact phot 23.3 2.5E+02 0.0055 29.6 6.9 55 37-91 27-89 (142)
239 PF14605 Nup35_RRM_2: Nup53/35 22.9 1.4E+02 0.003 26.0 4.2 51 657-710 3-53 (53)
240 KOG0917 Uncharacterized conser 22.4 5.5E+02 0.012 30.1 9.7 8 764-771 123-130 (338)
241 PF08777 RRM_3: RNA binding mo 21.9 1.9E+02 0.004 28.6 5.4 58 656-716 2-60 (105)
242 KOG0682 Ammonia permease [Inor 21.7 45 0.00099 40.9 1.4 56 147-216 291-346 (500)
243 PF04625 DEC-1_N: DEC-1 protei 21.6 1.8E+02 0.0039 34.3 5.9 24 989-1015 190-213 (407)
244 PF07576 BRAP2: BRCA1-associat 20.9 3.2E+02 0.0069 27.5 6.8 59 573-631 16-79 (110)
245 PLN02983 biotin carboxyl carri 20.8 2.9E+02 0.0062 32.0 7.2 20 987-1006 219-238 (274)
246 KOG0260 RNA polymerase II, lar 20.8 2.5E+03 0.054 29.8 18.7 27 133-159 604-631 (1605)
247 KOG2675 Adenylate cyclase-asso 20.5 83 0.0018 38.3 3.1 6 596-601 17-22 (480)
248 KOG4661 Hsp27-ERE-TATA-binding 20.2 1.7E+02 0.0036 36.8 5.5 62 652-713 402-467 (940)
No 1
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=3.8e-17 Score=166.98 Aligned_cols=68 Identities=24% Similarity=0.498 Sum_probs=64.1
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhccCcce--EEEE
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW--RVKF 636 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-~rgfAFVeFr~i~DAi~A~~~L~G~~~~--RI~f 636 (1134)
-.++||||||+++|++.|||.+|.+||+|.+|||++ ++|||||||++..||.+|+++|+|+.+| ||++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rV 79 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRV 79 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEE
Confidence 368999999999999999999999999999999998 9999999999999999999999999998 4544
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.65 E-value=8.9e-16 Score=168.57 Aligned_cols=137 Identities=17% Similarity=0.207 Sum_probs=112.5
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEee
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r 638 (1134)
+..+||||||+.+++|+||+++|++||+|.+|++.+ .||||||+|.+.+||..|++.|+|..+. +|+|++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 468999999999999999999999999999999864 5699999999999999999999999886 677776
Q ss_pred ccCCCCcccccccccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec---CCCceeeEeecCHHHHHHHHHHHH
Q 001164 639 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 639 ~~lGa~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl---sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
+.-. ....+.||||+++..++++++...|..+|......+ .+. ..+...+++|++.+||..++..|+
T Consensus 82 ~~~~---------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~ 152 (352)
T TIGR01661 82 PSSD---------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLN 152 (352)
T ss_pred cccc---------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC
Confidence 5211 224578999999999999999988888764433322 221 246789999999999999988773
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.62 E-value=3.4e-15 Score=167.89 Aligned_cols=141 Identities=18% Similarity=0.218 Sum_probs=114.3
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEE
Q 001164 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 635 (1134)
Q Consensus 566 v~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~ 635 (1134)
--...++||||||+.++||+||+++|+.||+|.+|++.. .||||||+|.+.+||.+|++.|+|..+. +|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 344678999999999999999999999999999999853 5699999999999999999999999886 566
Q ss_pred EeeccCCCCcccccccccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec---CCCceeeEeecCHHHHHHHHH
Q 001164 636 FMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATTAMA 711 (1134)
Q Consensus 636 f~r~~lGa~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl---sde~~a~LEFeSeEEAa~ak~ 711 (1134)
|++.+- .......|||++|+..+++|+|...|.+++....+.+ ++. ..+..++++|++.++|..|+.
T Consensus 183 ~a~p~~---------~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~ 253 (346)
T TIGR01659 183 YARPGG---------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAIS 253 (346)
T ss_pred cccccc---------cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHH
Confidence 555421 0124668999999999999999999988775444333 221 124689999999999999999
Q ss_pred HHHH
Q 001164 712 HLRQ 715 (1134)
Q Consensus 712 ~IRQ 715 (1134)
.+..
T Consensus 254 ~lng 257 (346)
T TIGR01659 254 ALNN 257 (346)
T ss_pred HhCC
Confidence 8854
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.60 E-value=1.7e-14 Score=169.57 Aligned_cols=144 Identities=14% Similarity=0.152 Sum_probs=110.8
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhccCcce--EEEEeeccC
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGL 641 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~~~~--RI~f~r~~l 641 (1134)
..++|||+||+.++++++|++.|++||.|.++.+.. .||||||+|++.++|.+|++.|+|..+. .|.+....-
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 456899999999999999999999999999999864 5899999999999999999999998765 444322110
Q ss_pred CCCcccccccccccceEEEccCCChhhHHHHHHHHhhccccCCcee-EecC--CCceeeEeecCHHHHHHHHHHHH
Q 001164 642 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLS--CEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 642 Ga~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfls--de~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.... .+......+.|||++++..+++|+|...|..||....+.+ ++.. .++.++++|++.++|..++..++
T Consensus 167 ~~~~--~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~ 240 (562)
T TIGR01628 167 KHER--EAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMN 240 (562)
T ss_pred cccc--ccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 0000 0112335678999999999999999999988875444333 2222 24579999999999999988774
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.57 E-value=1.8e-14 Score=169.25 Aligned_cols=136 Identities=21% Similarity=0.269 Sum_probs=110.1
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEeeccC
Q 001164 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 641 (1134)
Q Consensus 572 ~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~~l 641 (1134)
+||||||+.++||++|+++|++||+|.+|++.+ ++|||||+|.+.+||.+|++.|+++.++ ||.+.....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 699999999999999999999999999999954 5689999999999999999999999776 454442211
Q ss_pred CCCcccccccccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec--CCCceeeEeecCHHHHHHHHHHHH
Q 001164 642 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL--SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 642 Ga~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl--sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+ -....+|||++++..+++++|...|.+||....+.+ ++. ..++.++++|++.++|..|...++
T Consensus 82 ~~~-------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~ln 150 (562)
T TIGR01628 82 SLR-------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVN 150 (562)
T ss_pred ccc-------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhc
Confidence 111 113568999999999999999999998876555444 332 246789999999999999987774
No 6
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.56 E-value=3.2e-14 Score=165.40 Aligned_cols=146 Identities=18% Similarity=0.134 Sum_probs=109.6
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhc--cCcce----EEEEeecc-C
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIR--NHFSW----RVKFMDVG-L 641 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~--G~~~~----RI~f~r~~-l 641 (1134)
||+.||||||+.+++|+||+++|++||+|.++.+.+.|+||||+|++.++|.+|++.|+ |..+. +|.|.... +
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~ 80 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEI 80 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCccc
Confidence 68999999999999999999999999999999999999999999999999999999864 44444 56665321 1
Q ss_pred CCCcccccccccc--cceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 642 GTKGVINGVAVGS--CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 642 Ga~G~~~Gva~~~--s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
...+--++...++ ...|||++++..+++++|...|.++|....+.+..-.....++++|++.++|.+|+..|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Ln 155 (481)
T TIGR01649 81 KRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALN 155 (481)
T ss_pred ccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhc
Confidence 1111000001122 347899999988888888888887775544322111223479999999999999988773
No 7
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.55 E-value=3.7e-14 Score=168.78 Aligned_cols=147 Identities=20% Similarity=0.220 Sum_probs=115.8
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhccCcce--EEEEeecc
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVG 640 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~------~~rgfAFVeFr~i~DAi~A~~~L~G~~~~--RI~f~r~~ 640 (1134)
..|+||||||+.+++|++|+++|++||+|.+|.+. .+||||||+|.+.++|..|++.|+|+.+. +|++.++.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 46899999999999999999999999999999984 27899999999999999999999999886 56655432
Q ss_pred CC--CCcccccc--cccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec---CCCceeeEeecCHHHHHHHHHH
Q 001164 641 LG--TKGVINGV--AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATTAMAH 712 (1134)
Q Consensus 641 lG--a~G~~~Gv--a~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl---sde~~a~LEFeSeEEAa~ak~~ 712 (1134)
-. .+...+.+ .....+.||||+++..+++|+|.+.|.+||-...+.+ ++. ..++..+++|++.++|..|...
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 10 11111111 1234679999999999999999999998876555444 221 2467899999999999999988
Q ss_pred HHH
Q 001164 713 LRQ 715 (1134)
Q Consensus 713 IRQ 715 (1134)
++.
T Consensus 266 mNg 268 (612)
T TIGR01645 266 MNL 268 (612)
T ss_pred hCC
Confidence 853
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.52 E-value=1.6e-13 Score=159.61 Aligned_cols=149 Identities=15% Similarity=0.069 Sum_probs=115.1
Q ss_pred ccccCceEEeccCCC-ccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhccCcce----EEEEeec
Q 001164 566 IFSASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1134)
Q Consensus 566 v~~~s~~LWVGnL~~-~vte~dL~~~F~~yGpLe~v~~~~-~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~ 639 (1134)
.-.++++||||||+. .+++++|+.+|+.||.|.+|.+.+ .+|||||+|.+.++|..|++.|+|..+. +|.|.+.
T Consensus 271 ~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 271 GGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 346789999999998 699999999999999999999877 5799999999999999999999999876 6666532
Q ss_pred cC-----------CC---Ccccc----cc----------cccccceEEEccCCChhhHHHHHHHHhhccccCCceeEecC
Q 001164 640 GL-----------GT---KGVIN----GV----------AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS 691 (1134)
Q Consensus 640 ~l-----------Ga---~G~~~----Gv----------a~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfls 691 (1134)
.. |. ++..+ +. ...+++.|||+|++..+++|+|..-|..+|-.....+++..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~ 430 (481)
T TIGR01649 351 QNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFP 430 (481)
T ss_pred ccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEec
Confidence 10 00 00000 00 01267899999999999999988888777753333343333
Q ss_pred C----CceeeEeecCHHHHHHHHHHHH
Q 001164 692 C----EGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 692 d----e~~a~LEFeSeEEAa~ak~~IR 714 (1134)
. ....+++|.+.++|..|+..+.
T Consensus 431 ~~~~~~~~gfVeF~~~e~A~~Al~~ln 457 (481)
T TIGR01649 431 KDNERSKMGLLEWESVEDAVEALIALN 457 (481)
T ss_pred CCCCcceeEEEEcCCHHHHHHHHHHhc
Confidence 2 4788999999999999988874
No 9
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=99.52 E-value=2.6e-12 Score=147.15 Aligned_cols=106 Identities=13% Similarity=0.096 Sum_probs=78.5
Q ss_pred cCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce------EEEEeeccCCCCccccccccccc
Q 001164 582 ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFMDVGLGTKGVINGVAVGSC 655 (1134)
Q Consensus 582 vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~------RI~f~r~~lGa~G~~~Gva~~~s 655 (1134)
.+.+|=+.+|...|+ +++++...=-=-|+.|++- +.|-++.+.|-... |-.|+|. |.+...
T Consensus 21 Lt~~ene~lf~~lgk-~~~~l~aAVVqLY~a~p~~--~~W~~~~~~Gal~lVkD~~~rsyFlrl----------~di~~~ 87 (569)
T KOG3671|consen 21 LTSEENETLFKLLGK-KCKTLAAAVVQLYKAYPDP--NHWNKTGLCGALCLVKDNAQRSYFLRL----------VDIVNN 87 (569)
T ss_pred cchhHHHHHHHHhcc-chhhHHHHHHHHHhhcCCh--hhhccccCceeEEEeeccccceeeeEE----------eeecCc
Confidence 678888999999999 8888754111123455555 57777778776433 6777766 224456
Q ss_pred ceEEEccCCChhhHHHHHHHHhh-ccccCCc--eeEecCCCceeeEeecCHHHHHHHHHHH
Q 001164 656 FHVYVGNIPNQWAKDEILHESYK-VVYKGPY--MVTDLSCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 656 ~~LwVG~iss~~~keeilhELyk-fglk~p~--~ftflsde~~a~LEFeSeEEAa~ak~~I 713 (1134)
+.|| .||||+ |.|..+. +++|..++|+++|||++++||..|++++
T Consensus 88 rliW-------------dqELY~nf~y~q~r~ffhtFegddc~aGLnF~~E~EA~~F~k~V 135 (569)
T KOG3671|consen 88 RLIW-------------DQELYQNFEYRQPRTFFHTFEGDDCQAGLNFASEEEAQKFRKKV 135 (569)
T ss_pred eeee-------------hHHhhhhceeccCccceeeeccccceeeecccCHHHHHHHHHHH
Confidence 6777 578888 6555555 6699999999999999999999999999
No 10
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=99.51 E-value=5.8e-14 Score=165.66 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=58.4
Q ss_pred ccCCccchhhhhccccccCCCCCcccccc-----------ccCCCCCchhhhhHHHHhhhccccceEeccchhhHHHhhh
Q 001164 1029 LDMTKRTDFRHVKSTFTSTPPNKREVCRL-----------VPSSPGDHKGFQDFVSYLKQRECAGVIKIPAVKSIWARLM 1097 (1134)
Q Consensus 1029 lD~T~RtDfd~LEslFs~tPP~kkEVcrL-----------vP~s~~D~k~fqdFi~yL~Qk~cAgvIKip~~~~~i~~~L 1097 (1134)
..+++..-|..|..+|+..+..+++-.-. +-..+.|.|..|++.||| |++||++ ++||.+|
T Consensus 651 dk~en~dlfakL~~~Fatq~k~~k~~e~~eekkt~~kKk~kel~ilDsKtaQnLsIfl------gS~rmpy--eeik~~I 722 (1102)
T KOG1924|consen 651 DKLENDDLFAKLALKFATQPKVKKEQEGGEEKKTGTKKKVKELRILDSKTAQNLSIFL------GSFRMPY--EEIKNVI 722 (1102)
T ss_pred hhccchHHHHHHHHHhhccccccccccccccccchhhhhhhhheecchHHHHHHHHHH------hhccCCH--HHHHHHH
Confidence 33555556788888899876544442211 234578899999999999 8899999 9999999
Q ss_pred hcccCccccccccc
Q 001164 1098 FILPYSQDICSMLS 1111 (1134)
Q Consensus 1098 ~lvPeS~e~~s~L~ 1111 (1134)
++|+|..++++||.
T Consensus 723 Levne~vLse~~iq 736 (1102)
T KOG1924|consen 723 LEVNEDVLSESMIQ 736 (1102)
T ss_pred hhccHHHHHHHHHH
Confidence 99999999999875
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.50 E-value=1.7e-13 Score=156.37 Aligned_cols=144 Identities=16% Similarity=0.227 Sum_probs=109.4
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce--EEE--Ee
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW--RVK--FM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~--RI~--f~ 637 (1134)
...++||||||+.++++++|+++|++||+|.+|.+.. .+|||||+|.+.+||.+|+. |+|..+. .|. +.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 4578999999999999999999999999999999864 58999999999999999995 8998876 333 32
Q ss_pred eccC--C---CCcccccccccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec---CCCceeeEeecCHHHHHH
Q 001164 638 DVGL--G---TKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATT 708 (1134)
Q Consensus 638 r~~l--G---a~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl---sde~~a~LEFeSeEEAa~ 708 (1134)
...- . +.. ..| ....++.||||+++..+++++|...|..+|....+.+ .+. ...+.++++|.+.++|..
T Consensus 166 ~~~~~~~~~~~~~-~~~-~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 166 QAEKNRAAKAATH-QPG-DIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred chhhhhhhhcccc-cCC-CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 2110 0 000 000 0123789999999999999999988888775544433 222 235689999999999999
Q ss_pred HHHHHH
Q 001164 709 AMAHLR 714 (1134)
Q Consensus 709 ak~~IR 714 (1134)
|+..|+
T Consensus 244 A~~~l~ 249 (457)
T TIGR01622 244 ALEVMN 249 (457)
T ss_pred HHHhcC
Confidence 987663
No 12
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.48 E-value=2.2e-13 Score=161.81 Aligned_cols=134 Identities=21% Similarity=0.309 Sum_probs=106.1
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe-----ccCceEEEEecCHHHHHHHHHhhccCcceEEEEeeccCCCC
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSWRVKFMDVGLGTK 644 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~-----~~rgfAFVeFr~i~DAi~A~~~L~G~~~~RI~f~r~~lGa~ 644 (1134)
.++||||||+.+++|+||+++|++||+|.++.+. .+||||||+|.+.+||.+|++.|+|..+. .
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~------~----- 126 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIR------P----- 126 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeec------C-----
Confidence 5899999999999999999999999999999985 38999999999999999999999998542 0
Q ss_pred ccccccc-ccccceEEEccCCChhhHHHHHHHHhhcc--ccCCceeEe----cCCCceeeEeecCHHHHHHHHHHHH
Q 001164 645 GVINGVA-VGSCFHVYVGNIPNQWAKDEILHESYKVV--YKGPYMVTD----LSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 645 G~~~Gva-~~~s~~LwVG~iss~~~keeilhELykfg--lk~p~~ftf----lsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
|-.-+|. ....+.||||+|+..++++||++||.+++ ....+.+.. ...+..++++|.+.++|..|+..++
T Consensus 127 Gr~l~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~ 203 (578)
T TIGR01648 127 GRLLGVCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLM 203 (578)
T ss_pred CccccccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhh
Confidence 0001111 23578999999999999999999999853 222222211 1236789999999999999877664
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.47 E-value=3.2e-13 Score=155.90 Aligned_cols=148 Identities=19% Similarity=0.227 Sum_probs=111.9
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhcc------------CCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce-
Q 001164 566 IFSASKQLWLGSFGPEASEAHIRFQIDRF------------GPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW- 632 (1134)
Q Consensus 566 v~~~s~~LWVGnL~~~vte~dL~~~F~~y------------GpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~- 632 (1134)
.-...++||||||+.++|+++|+++|..| ++|.++++-..+|||||+|++.++|..|+ .|+|..+.
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~~g 249 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM-ALDSIIYSN 249 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEeeC
Confidence 34568999999999999999999999975 57889999889999999999999999999 59998664
Q ss_pred -EEEEeeccCC-----------CCc---ccccc--------cccccceEEEccCCChhhHHHHHHHHhhccccCCcee-E
Q 001164 633 -RVKFMDVGLG-----------TKG---VINGV--------AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T 688 (1134)
Q Consensus 633 -RI~f~r~~lG-----------a~G---~~~Gv--------a~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-t 688 (1134)
.|++.++.-- ... -..+. .....+.||||+|+..+++++|..-|..||....+.+ +
T Consensus 250 ~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~ 329 (509)
T TIGR01642 250 VFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIK 329 (509)
T ss_pred ceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEe
Confidence 4554432100 000 00000 1124689999999999999999988888875444433 2
Q ss_pred ec---CCCceeeEeecCHHHHHHHHHHHH
Q 001164 689 DL---SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 689 fl---sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
+. ...+.++++|.+.++|..|+..|.
T Consensus 330 ~~~~g~~~g~afv~f~~~~~a~~A~~~l~ 358 (509)
T TIGR01642 330 DIATGLSKGYAFCEYKDPSVTDVAIAALN 358 (509)
T ss_pred cCCCCCcCeEEEEEECCHHHHHHHHHHcC
Confidence 22 246789999999999999988774
No 14
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.6e-13 Score=155.29 Aligned_cols=137 Identities=21% Similarity=0.307 Sum_probs=110.6
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcceEEEEeeccC
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSWRVKFMDVGL 641 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~RI~f~r~~l 641 (1134)
.-.|.+|||.|+.|+.|+||.-+|++-|+|-.|++-. +||||||.|.+-++|-.|++.|++..+..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~-------- 152 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRP-------- 152 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccC--------
Confidence 5689999999999999999999999999999999742 79999999999999999999999985431
Q ss_pred CCCccccccccc-ccceEEEccCCChhhHHHHHHHHhhc--cccCCceeE----ecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 642 GTKGVINGVAVG-SCFHVYVGNIPNQWAKDEILHESYKV--VYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 642 Ga~G~~~Gva~~-~s~~LwVG~iss~~~keeilhELykf--glk~p~~ft----flsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
|-.-||++. .+|.|+||+||+.|.+|||+.|+.+. |....+-+. ....+..++++|++-.-|+-++..|.
T Consensus 153 ---GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~ 229 (506)
T KOG0117|consen 153 ---GKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLM 229 (506)
T ss_pred ---CCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhcc
Confidence 223355554 79999999999999999999999995 322222221 23447889999999977766665554
Q ss_pred H
Q 001164 715 Q 715 (1134)
Q Consensus 715 Q 715 (1134)
+
T Consensus 230 ~ 230 (506)
T KOG0117|consen 230 P 230 (506)
T ss_pred C
Confidence 3
No 15
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.45 E-value=1e-12 Score=144.58 Aligned_cols=145 Identities=18% Similarity=0.256 Sum_probs=110.8
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce------EEEEe
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW------RVKFM 637 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~------RI~f~ 637 (1134)
.++||||||+.++++++|+.+|++||.|..+.+.. .+|||||+|.+.+||..|++.|+|..+. +++|+
T Consensus 89 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a 168 (352)
T TIGR01661 89 GANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFA 168 (352)
T ss_pred cceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 46899999999999999999999999999888753 5799999999999999999999998763 56665
Q ss_pred eccC--CCCcc---------------------------------------------------------------------
Q 001164 638 DVGL--GTKGV--------------------------------------------------------------------- 646 (1134)
Q Consensus 638 r~~l--Ga~G~--------------------------------------------------------------------- 646 (1134)
+... ..++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (352)
T TIGR01661 169 NNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPA 248 (352)
T ss_pred CCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCcc
Confidence 3110 00000
Q ss_pred ----ccccc--------ccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec---CCCceeeEeecCHHHHHHHH
Q 001164 647 ----INGVA--------VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATTAM 710 (1134)
Q Consensus 647 ----~~Gva--------~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl---sde~~a~LEFeSeEEAa~ak 710 (1134)
..+.. .+.++.||||+|+..+++++|.+-|..||-...+.+ ++. ..++.++++|.+.++|..|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai 328 (352)
T TIGR01661 249 TDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAI 328 (352)
T ss_pred ccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHH
Confidence 00000 122446999999999999999999988875555443 222 34778999999999999999
Q ss_pred HHHH
Q 001164 711 AHLR 714 (1134)
Q Consensus 711 ~~IR 714 (1134)
..|.
T Consensus 329 ~~ln 332 (352)
T TIGR01661 329 LSLN 332 (352)
T ss_pred HHhC
Confidence 8884
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.43 E-value=1.4e-12 Score=150.55 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=109.7
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
...++||||||+..+++++|+++|+.||+|..|.+.. .+|||||+|.+.++|..|++.|+|..++ +|+++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4578999999999999999999999999999998854 5899999999999999999999999987 56666
Q ss_pred eccCCC----------------Cccccc---ccccccceEEEccCCChh----------hHHHHHHHHhhccccCCcee-
Q 001164 638 DVGLGT----------------KGVING---VAVGSCFHVYVGNIPNQW----------AKDEILHESYKVVYKGPYMV- 687 (1134)
Q Consensus 638 r~~lGa----------------~G~~~G---va~~~s~~LwVG~iss~~----------~keeilhELykfglk~p~~f- 687 (1134)
..+... .++... +...+++.|||.++.... +.|+|.+||.+||....+.+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 433110 000000 112378999999996542 23567777777765444332
Q ss_pred Eec------CCCceeeEeecCHHHHHHHHHHHH
Q 001164 688 TDL------SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 688 tfl------sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
+.. ...+.++|+|++.++|..|+..|+
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~ln 485 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMN 485 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcC
Confidence 211 124679999999999999999884
No 17
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.42 E-value=1.9e-12 Score=147.93 Aligned_cols=147 Identities=20% Similarity=0.300 Sum_probs=109.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~------~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
..+++||||||+.++||++|+++|++||.|..|.+. ..+|||||+|.+.++|..|++.|+|..+. +|.|+
T Consensus 184 p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEc
Confidence 347999999999999999999999999999999987 35799999999999999999999998775 77774
Q ss_pred ecc------------------CC----------------------------------------CCcccc---------c-
Q 001164 638 DVG------------------LG----------------------------------------TKGVIN---------G- 649 (1134)
Q Consensus 638 r~~------------------lG----------------------------------------a~G~~~---------G- 649 (1134)
.-. .| ..|.++ +
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (457)
T TIGR01622 264 QDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGA 343 (457)
T ss_pred cCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccc
Confidence 210 00 000000 0
Q ss_pred ---------c----cccccceEEEccCCChhh----------HHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHH
Q 001164 650 ---------V----AVGSCFHVYVGNIPNQWA----------KDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEA 706 (1134)
Q Consensus 650 ---------v----a~~~s~~LwVG~iss~~~----------keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEA 706 (1134)
+ -..+++.|+|.++-...+ +|+|..|+.++|-.-.+.+..-.....++|+|.+.++|
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A 423 (457)
T TIGR01622 344 LAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAA 423 (457)
T ss_pred cccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHH
Confidence 0 002567888888854433 45777777776655444343345578899999999999
Q ss_pred HHHHHHHH
Q 001164 707 TTAMAHLR 714 (1134)
Q Consensus 707 a~ak~~IR 714 (1134)
..|+..|.
T Consensus 424 ~~A~~~ln 431 (457)
T TIGR01622 424 LAAFQALN 431 (457)
T ss_pred HHHHHHhc
Confidence 99999883
No 18
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=3.2e-12 Score=144.38 Aligned_cols=139 Identities=21% Similarity=0.291 Sum_probs=120.5
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce-------EEEE
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW-------RVKF 636 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~-------RI~f 636 (1134)
.=+||||.|+..++|.||+++|++||.+..|.+.+ .+||+||.|...+||.+|..+|++.+.. .|||
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 34799999999999999999999999999999865 5699999999999999999999998764 8998
Q ss_pred eeccCCCCcccccccccccceEEEccCCChhhHHHHHHHHhhccccCCcee-E--ecCCCceeeEeecCHHHHHHHHHHH
Q 001164 637 MDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T--DLSCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 637 ~r~~lGa~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-t--flsde~~a~LEFeSeEEAa~ak~~I 713 (1134)
+|.+.- + +...+.||||-++++.++.|+..-|.+||.++++.+ + +--++..+++.|.+.|-|..|.+.|
T Consensus 114 Ad~E~e-r-------~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ 185 (510)
T KOG0144|consen 114 ADGERE-R-------IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKAL 185 (510)
T ss_pred cchhhh-c-------cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhh
Confidence 876311 0 246889999999999999999999999999998855 3 3355899999999999999999988
Q ss_pred HHH
Q 001164 714 RQH 716 (1134)
Q Consensus 714 RQ~ 716 (1134)
++.
T Consensus 186 ng~ 188 (510)
T KOG0144|consen 186 NGT 188 (510)
T ss_pred ccc
Confidence 653
No 19
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=9.7e-12 Score=134.44 Aligned_cols=147 Identities=20% Similarity=0.279 Sum_probs=115.8
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEE
Q 001164 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 635 (1134)
Q Consensus 566 v~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~ 635 (1134)
..+..=+++||.|.+.++-++|++.|.+||.|-+-++.| +|||+||-|-+-+||+.|++.|+|+.++ |-.
T Consensus 58 t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTN 137 (321)
T KOG0148|consen 58 TSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTN 137 (321)
T ss_pred ccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecc
Confidence 334466899999999999999999999999999988864 7899999999999999999999999887 333
Q ss_pred Eeecc---CCCCcc----cccccccccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHH
Q 001164 636 FMDVG---LGTKGV----INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATT 708 (1134)
Q Consensus 636 f~r~~---lGa~G~----~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ 708 (1134)
.+-+. .|.+++ +=--....++.+|||+|.+.+.+|+|.+-|-.||-+-+ ++.+.++..+++-|+|-|-|+.
T Consensus 138 WATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~E--VRvFk~qGYaFVrF~tkEaAah 215 (321)
T KOG0148|consen 138 WATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQE--VRVFKDQGYAFVRFETKEAAAH 215 (321)
T ss_pred ccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceE--EEEecccceEEEEecchhhHHH
Confidence 44222 233322 00001136899999999998888888877776665444 6777889999999999999888
Q ss_pred HHHHHH
Q 001164 709 AMAHLR 714 (1134)
Q Consensus 709 ak~~IR 714 (1134)
|...++
T Consensus 216 AIv~mN 221 (321)
T KOG0148|consen 216 AIVQMN 221 (321)
T ss_pred HHHHhc
Confidence 877774
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.30 E-value=1.8e-11 Score=145.64 Aligned_cols=139 Identities=17% Similarity=0.225 Sum_probs=107.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCC-cceEEEe-------ccCceEEEEecCHHHHHHHHHhhccCc--ce----E
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGP-LEHFFFF-------PIKGFALVEYINIIDAIRAREYIRNHF--SW----R 633 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGp-Le~v~~~-------~~rgfAFVeFr~i~DAi~A~~~L~G~~--~~----R 633 (1134)
...++||||||+.+++++||+++|++|+. +..+.++ ..||||||+|++.++|..|++.|.... +| +
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 35789999999999999999999999974 4555554 258999999999999999999887543 33 5
Q ss_pred EEEeeccCCCCcccccccccccceEEEccCCChhhHHHHHHHHhhc--cccCCceeEecCCCceeeEeecCHHHHHHHHH
Q 001164 634 VKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKV--VYKGPYMVTDLSCEGALLMEFRTPEEATTAMA 711 (1134)
Q Consensus 634 I~f~r~~lGa~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykf--glk~p~~ftflsde~~a~LEFeSeEEAa~ak~ 711 (1134)
|+++.+....+ --....++.|||++++..+++|+|.++|.+| +....+ +.. +..++++|++.++|..|+.
T Consensus 216 VdwA~p~~~~d----~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV--~~~--rgfAFVeF~s~e~A~kAi~ 287 (578)
T TIGR01648 216 VDWAEPEEEVD----EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERV--KKI--RDYAFVHFEDREDAVKAMD 287 (578)
T ss_pred EEeeccccccc----ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEE--Eee--cCeEEEEeCCHHHHHHHHH
Confidence 66665532211 0011246889999999999999999999987 544432 222 4579999999999999998
Q ss_pred HHH
Q 001164 712 HLR 714 (1134)
Q Consensus 712 ~IR 714 (1134)
.++
T Consensus 288 ~ln 290 (578)
T TIGR01648 288 ELN 290 (578)
T ss_pred HhC
Confidence 875
No 21
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=4e-11 Score=124.26 Aligned_cols=142 Identities=20% Similarity=0.214 Sum_probs=106.7
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhccCcce----EEEEeeccC
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 641 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~---~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~~l 641 (1134)
.+|.+|||||++++.|.||+++|-+||+|..|-+.- +..||||||++.+||.+|+..-+|-..- ||+|.+-|-
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 478999999999999999999999999999998853 6789999999999999999998887653 899997551
Q ss_pred CC-----------Cc-ccccccc-----cccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHH
Q 001164 642 GT-----------KG-VINGVAV-----GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPE 704 (1134)
Q Consensus 642 Ga-----------~G-~~~Gva~-----~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeE 704 (1134)
++ +| -.+|-.- .+-..+.|-++++.-+-+++-.-+++.+ ..-|.+..-+..=.++|.+.|
T Consensus 85 ~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaG---dvCfadv~rDg~GvV~~~r~e 161 (241)
T KOG0105|consen 85 SSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAG---DVCFADVQRDGVGVVEYLRKE 161 (241)
T ss_pred cccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhC---Ceeeeeeecccceeeeeeehh
Confidence 11 11 0001001 1345688999999888888877777644 444555555556668999998
Q ss_pred HHHHHHHHH
Q 001164 705 EATTAMAHL 713 (1134)
Q Consensus 705 EAa~ak~~I 713 (1134)
|-+-|..++
T Consensus 162 DMkYAvr~l 170 (241)
T KOG0105|consen 162 DMKYAVRKL 170 (241)
T ss_pred hHHHHHHhh
Confidence 877766555
No 22
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.18 E-value=4.6e-11 Score=101.21 Aligned_cols=60 Identities=28% Similarity=0.450 Sum_probs=56.7
Q ss_pred EEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 573 LWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 573 LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
||||||+.++|++||++.|++||+|..+.+.+ .++||||+|.+.+||..|++.|+|..+.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~ 65 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKIN 65 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEEC
Confidence 79999999999999999999999999999877 5899999999999999999999998654
No 23
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.13 E-value=1.7e-10 Score=115.64 Aligned_cols=70 Identities=20% Similarity=0.226 Sum_probs=63.3
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
..+++||||||+.+++|+||+++|++||+|.++.+.. .||||||+|.+.+||.+|++.|+|+.+. +|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4578999999999999999999999999999998853 5899999999999999999999999876 56655
No 24
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=3.6e-10 Score=128.68 Aligned_cols=203 Identities=18% Similarity=0.255 Sum_probs=144.5
Q ss_pred CCCCCCCCCCC--CCCcCCccccc--cCcCCCCCC---CCCCCCCcccccccC---CCCCCCCCCCCCCCcceeeeecCC
Q 001164 491 MPRDLPNPQML--SPAARTPLHFR--NNSFEGRNH---FPGRSSSEGASNALL---SPNHHLPVPYASTTSQIVWYFDED 560 (1134)
Q Consensus 491 ~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~ 560 (1134)
+|||+-.-.+. +-.+-.-.|+| -|.|+|.|- |+--.+-+-+++.+- |-++. -|-
T Consensus 91 IPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir----------------~GK 154 (506)
T KOG0117|consen 91 IPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR----------------PGK 154 (506)
T ss_pred CCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc----------------CCC
Confidence 68888766553 22234445555 467888775 554443333444432 21222 122
Q ss_pred cccccccccCceEEeccCCCccCHHHHHHHhhccCC-cceEEEec-------cCceEEEEecCHHHHHHHHHhh-ccCc-
Q 001164 561 PAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGP-LEHFFFFP-------IKGFALVEYINIIDAIRAREYI-RNHF- 630 (1134)
Q Consensus 561 ~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGp-Le~v~~~~-------~rgfAFVeFr~i~DAi~A~~~L-~G~~- 630 (1134)
+.-.-|--+.|.||||||+-+-+++||.++|.+.|+ +.+|.+++ .||||||||++-+-|..|++-| +|+.
T Consensus 155 ~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~k 234 (506)
T KOG0117|consen 155 LLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIK 234 (506)
T ss_pred EeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCcee
Confidence 222334447899999999999999999999999998 66888863 7899999999999997776655 5553
Q ss_pred ce----EEEEeeccCCCCcccccccccccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHH
Q 001164 631 SW----RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEA 706 (1134)
Q Consensus 631 ~~----RI~f~r~~lGa~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEA 706 (1134)
+| .|+.+++...-++- .....+.|||-||.-.+++|.|..+|.+||.... ++.+ +..+++.|++.++|
T Consensus 235 lwgn~~tVdWAep~~e~ded----~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veR--Vkk~--rDYaFVHf~eR~da 306 (506)
T KOG0117|consen 235 LWGNAITVDWAEPEEEPDED----TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVER--VKKP--RDYAFVHFAEREDA 306 (506)
T ss_pred ecCCcceeeccCcccCCChh----hhhheeeeeeeccchhhhHHHHHHHHHhccceEE--eecc--cceeEEeecchHHH
Confidence 34 78888886544321 2346899999999999999999999998865443 4445 44899999999999
Q ss_pred HHHHHHHHHHh
Q 001164 707 TTAMAHLRQHR 717 (1134)
Q Consensus 707 a~ak~~IRQ~r 717 (1134)
.+||+.++...
T Consensus 307 vkAm~~~ngke 317 (506)
T KOG0117|consen 307 VKAMKETNGKE 317 (506)
T ss_pred HHHHHHhcCce
Confidence 99999997554
No 25
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.00 E-value=9e-08 Score=114.83 Aligned_cols=64 Identities=22% Similarity=0.449 Sum_probs=60.9
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
.|++||||.|..+++|.||..+|+.||.|++|.+-.+|++|||.-.+-.||.+|+..|....+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~ 483 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVA 483 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhccccc
Confidence 4899999999999999999999999999999999999999999999999999999999976554
No 26
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.94 E-value=1.9e-09 Score=93.09 Aligned_cols=59 Identities=31% Similarity=0.534 Sum_probs=53.5
Q ss_pred EEeccCCCccCHHHHHHHhhccCCcceEEEecc-----CceEEEEecCHHHHHHHHHhhccCcc
Q 001164 573 LWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 573 LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~-----rgfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
|+|+||+++++++||++.|+.||+|+.|.+... ++||||+|.+.+||..|++.++|..+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~ 64 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEI 64 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEE
Confidence 799999999999999999999999999999875 79999999999999999999998754
No 27
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=3.8e-09 Score=114.15 Aligned_cols=136 Identities=18% Similarity=0.228 Sum_probs=111.1
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEeccC------ceEEEEecCHHHHHHHHHhhccCcce----EEEEeec
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK------GFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~r------gfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~ 639 (1134)
--+|.|-+|+.+.|++||+.+|+..|.||+.++.|+| ||.||+|.+..||++|+.-|+|-++- +|-|+|+
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 3589999999999999999999999999999998855 99999999999999999999998875 8889988
Q ss_pred cCCCCcccccccccccceEEEccCCChhhHHHHHHHHhhccc--cCCcee--EecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 640 GLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVY--KGPYMV--TDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 640 ~lGa~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfgl--k~p~~f--tflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
-.. .| ---+|||.++++..+-.|+++-|..||- ...+.. ..--++..-++-|+..+||..+.+.++
T Consensus 121 Ss~---~I------k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lN 190 (360)
T KOG0145|consen 121 SSD---SI------KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLN 190 (360)
T ss_pred Chh---hh------cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhcc
Confidence 321 11 1347999999999999999998888752 111111 112347788899999999999988775
No 28
>smart00362 RRM_2 RNA recognition motif.
Probab=98.86 E-value=8.8e-09 Score=85.19 Aligned_cols=60 Identities=28% Similarity=0.466 Sum_probs=56.0
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEeccC----ceEEEEecCHHHHHHHHHhhccCcc
Q 001164 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK----GFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 572 ~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~r----gfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
+|||+||+.+++++||++.|.+||++..+.+.+.+ |||||+|.+.++|.+|++.|+|..+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~ 64 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKL 64 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEE
Confidence 48999999999999999999999999999998755 9999999999999999999998754
No 29
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.83 E-value=7.5e-09 Score=112.98 Aligned_cols=62 Identities=15% Similarity=0.045 Sum_probs=58.4
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~---~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
.++||||||+.++||+||++.|+.||.|++|++.+ .+|||||+|++.++|..|+. |+|..++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~ 68 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIV 68 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeC
Confidence 68999999999999999999999999999999975 47999999999999999995 9999887
No 30
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.78 E-value=3.2e-08 Score=102.94 Aligned_cols=140 Identities=14% Similarity=0.217 Sum_probs=108.8
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce--EEEEeeccC
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGL 641 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~--RI~f~r~~l 641 (1134)
..+||||||..-+||+-|-++|-+-||+-++.+=+ .+|||||||++-+||.=|++-|++-++. +|+|.+..-
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~ 88 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASA 88 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccc
Confidence 46899999999999999999999999999998832 6799999999999999999999987776 899998752
Q ss_pred CCCcccccccccccceEEEccCCChhhHHHHHHHHhhcc--ccCCceeEec---CCCceeeEeecCHHHHHHHHHHHHH
Q 001164 642 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVV--YKGPYMVTDL---SCEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 642 Ga~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfg--lk~p~~ftfl---sde~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
+.+-+ --+-+|+||++-..+++..+-+-|.+|| ...|-.+.+. ......+++|++.|-+.++...+++
T Consensus 89 ~~~nl------~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ng 161 (203)
T KOG0131|consen 89 HQKNL------DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNG 161 (203)
T ss_pred ccccc------cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhcc
Confidence 22211 1236899999999777766666666665 3333333322 2355788999999888888887754
No 31
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.76 E-value=1.7e-08 Score=114.40 Aligned_cols=70 Identities=13% Similarity=0.238 Sum_probs=61.9
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhccCcce------EEEEe
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW------RVKFM 637 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~------rgfAFVeFr~i~DAi~A~~~L~G~~~~------RI~f~ 637 (1134)
..+|||+||+.++||+||+++|++||.|+.+.+.+. ||||||+|.+.+||.+|++.|+|..+. +|+++
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 568999999999999999999999999999998753 589999999999999999999998652 56666
Q ss_pred ec
Q 001164 638 DV 639 (1134)
Q Consensus 638 r~ 639 (1134)
+.
T Consensus 273 ~~ 274 (346)
T TIGR01659 273 EE 274 (346)
T ss_pred Cc
Confidence 43
No 32
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.75 E-value=1.2e-08 Score=108.90 Aligned_cols=138 Identities=17% Similarity=0.187 Sum_probs=104.4
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce----EEEEeeccCCCCcc
Q 001164 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLGTKGV 646 (1134)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~~lGa~G~ 646 (1134)
..+|||+|+..+.+.||+++|..||.|.+|.+.. ||+||+|.+..||.+|+..|+|+.++ .+++++..-|.+|.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~ 79 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGR 79 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--ccceeccCchhhhhcccchhcCceecceeeeeecccccccccCC
Confidence 4689999999999999999999999999999987 99999999999999999999999998 45666543222222
Q ss_pred -ccc----------ccccccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 647 -ING----------VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 647 -~~G----------va~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
++| +.....+.|-|-+++.-..-++|-.-|.++|.. + ++.+ -.+..+++|.+++||+++...+.
T Consensus 80 ~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~-~--~~~~-~~~~~~v~Fs~~~da~ra~~~l~ 154 (216)
T KOG0106|consen 80 PRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEV-T--YVDA-RRNFAFVEFSEQEDAKRALEKLD 154 (216)
T ss_pred CCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCC-c--hhhh-hccccceeehhhhhhhhcchhcc
Confidence 211 112345666677776666666666666655533 2 3333 56889999999999999887774
No 33
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.75 E-value=1.9e-08 Score=110.53 Aligned_cols=77 Identities=23% Similarity=0.431 Sum_probs=72.2
Q ss_pred eeeecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhc
Q 001164 554 VWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIR 627 (1134)
Q Consensus 554 ~~~~~g~~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~ 627 (1134)
+|--.+||-|.+ -|=|+||||-|..+.+|+.|+.+|++||+|+.|.+++ ++|||||||++.+|-..|.+..+
T Consensus 87 ~wdP~~dp~a~g--DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~ad 164 (335)
T KOG0113|consen 87 LWDPNNDPNAIG--DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDAD 164 (335)
T ss_pred hcCCCCCCcccC--CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhcc
Confidence 677888999988 8999999999999999999999999999999999864 78999999999999999999999
Q ss_pred cCcce
Q 001164 628 NHFSW 632 (1134)
Q Consensus 628 G~~~~ 632 (1134)
|..|-
T Consensus 165 G~~Id 169 (335)
T KOG0113|consen 165 GIKID 169 (335)
T ss_pred Cceec
Confidence 99885
No 34
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.74 E-value=7.8e-08 Score=96.85 Aligned_cols=113 Identities=23% Similarity=0.296 Sum_probs=88.1
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEee-
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD- 638 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r- 638 (1134)
.+.||||||+.++++++|.++|.+||++..|.+.. .||||||+|.+.++|..|++.|+|..+. +|....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 79999999999999999999999999999888754 5699999999999999999999988775 444422
Q ss_pred -ccCCCCcc-----------ccccc--ccccceEEEccCCChhhHHHHHHHHhhcccc
Q 001164 639 -VGLGTKGV-----------INGVA--VGSCFHVYVGNIPNQWAKDEILHESYKVVYK 682 (1134)
Q Consensus 639 -~~lGa~G~-----------~~Gva--~~~s~~LwVG~iss~~~keeilhELykfglk 682 (1134)
.+....+. ..+.. ......+|++++...+.++++...+..++..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDI 252 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccc
Confidence 11111110 00000 1258899999999999999999999886654
No 35
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.69 E-value=2.4e-08 Score=111.71 Aligned_cols=135 Identities=21% Similarity=0.242 Sum_probs=105.2
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhccCcce--EEEEeecc-
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVG- 640 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~------~~rgfAFVeFr~i~DAi~A~~~L~G~~~~--RI~f~r~~- 640 (1134)
-|.+|||+|+-...|+-||..|..||||.++-+- .-+|||||||+=.+-|--|.+-|+|.-++ -|++.|+.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 5889999999999999999999999999999873 36899999999999999999999999887 58877764
Q ss_pred CCC-Cccccccc--ccccceEEEccCCChhhHHHHHHHHhhccccCCcee----EecCCCceeeEeecCHH
Q 001164 641 LGT-KGVINGVA--VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV----TDLSCEGALLMEFRTPE 704 (1134)
Q Consensus 641 lGa-~G~~~Gva--~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f----tflsde~~a~LEFeSeE 704 (1134)
++. +-.|+-|. ++.-+.+||..|....++++|-.=|-.||.+--+-+ +--.-+..=++||.+..
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~q 263 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 263 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEecccc
Confidence 222 22233332 246789999999999999999888887765444422 22233566778888764
No 36
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=1.1e-07 Score=108.81 Aligned_cols=128 Identities=19% Similarity=0.259 Sum_probs=105.5
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhccCcce--EEEEeeccCCCCc
Q 001164 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGLGTKG 645 (1134)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~---~rgfAFVeFr~i~DAi~A~~~L~G~~~~--RI~f~r~~lGa~G 645 (1134)
..|||| ++|||++|.+.|+++|++.++++-+ +-|||||+|.+.+||.+|++.|+...+. .||-|.++--.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~-- 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP-- 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC--
Confidence 469999 9999999999999999999999865 6799999999999999999999998876 77877663211
Q ss_pred ccccccccccceEEEccCCChhhHHHHHHHHhhccccCCcee--EecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 646 VINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV--TDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 646 ~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f--tflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
+ -+||-++..+++...+..=|-.||.+=.+.+ ...++... +++|+++++|..+...++
T Consensus 77 ---------~-~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~n 136 (369)
T KOG0123|consen 77 ---------S-LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLN 136 (369)
T ss_pred ---------c-eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhc
Confidence 1 1999999999998888777777775555433 33345777 999999999999998875
No 37
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.68 E-value=3.7e-08 Score=118.35 Aligned_cols=64 Identities=20% Similarity=0.305 Sum_probs=59.3
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
..++||||||+.+++++||+.+|++||+|.++.+.+ .||||||+|++.++|.+|++.|+|..++
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elg 272 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG 272 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC
Confidence 357899999999999999999999999999999864 5899999999999999999999998765
No 38
>smart00360 RRM RNA recognition motif.
Probab=98.64 E-value=8.1e-08 Score=78.98 Aligned_cols=58 Identities=29% Similarity=0.421 Sum_probs=52.9
Q ss_pred eccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhccCcce
Q 001164 575 LGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 575 VGnL~~~vte~dL~~~F~~yGpLe~v~~~~~------rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
|+||+.+++++||+..|++||+|..+.+... +|||||+|.+.++|.+|++.|+|..+.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~ 64 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD 64 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC
Confidence 6899999999999999999999999998764 579999999999999999999987543
No 39
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.64 E-value=1.2e-07 Score=78.83 Aligned_cols=60 Identities=30% Similarity=0.474 Sum_probs=56.1
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEecc-----CceEEEEecCHHHHHHHHHhhccCcc
Q 001164 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 572 ~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~-----rgfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
+|+|++|+.++++++|+..|++||.|..+.+... +++|||+|++.++|..|++.|+|..+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~ 65 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKEL 65 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeE
Confidence 4899999999999999999999999999999873 79999999999999999999999854
No 40
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.62 E-value=6e-08 Score=106.48 Aligned_cols=128 Identities=18% Similarity=0.216 Sum_probs=102.7
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce--EEEEeeccCCCCccccc
Q 001164 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGLGTKGVING 649 (1134)
Q Consensus 572 ~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~--RI~f~r~~lGa~G~~~G 649 (1134)
+||||||+..+++.+|+.+|++||++-.-.|. |+|+||.-++-.-|.+|.+.|+|-++- -|.+--+ ..|
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaS--ksK----- 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV--KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEAS--KSK----- 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee--cccceEEeecccccHHHHhhcccceecceEEEEEec--ccc-----
Confidence 79999999999999999999999999877775 599999999999999999999998765 3332222 111
Q ss_pred ccccccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 650 VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 650 va~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+.+-.|.||||+..-.-+|+..-|.+.|-.-++.+ -++.+++.|+..+||..+.+.|.
T Consensus 75 --sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdi----vkdy~fvh~d~~eda~~air~l~ 133 (346)
T KOG0109|consen 75 --SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDI----VKDYAFVHFDRAEDAVEAIRGLD 133 (346)
T ss_pred --CCCccccccCCCCccccCHHHhhhhcccCCceeeee----ecceeEEEEeeccchHHHHhccc
Confidence 347889999999999999998888877553333222 25679999999999998877664
No 41
>PLN03213 repressor of silencing 3; Provisional
Probab=98.62 E-value=6.5e-08 Score=111.35 Aligned_cols=63 Identities=11% Similarity=0.165 Sum_probs=57.8
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec--cCceEEEEecCH--HHHHHHHHhhccCcce
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINI--IDAIRAREYIRNHFSW 632 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~--~rgfAFVeFr~i--~DAi~A~~~L~G~~~~ 632 (1134)
+-.||||||+.+|+++||+..|..||.|.+|.|.| .||||||+|..- .++.+|+..|+|....
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWK 76 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWK 76 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeec
Confidence 45899999999999999999999999999999977 899999999987 6789999999998643
No 42
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=7e-08 Score=105.16 Aligned_cols=63 Identities=21% Similarity=0.343 Sum_probs=61.2
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
.++||||||.+..||++|+..|++||+|-.|++|+.+|||||-|+.-+-|-+|+-.|+|+.+.
T Consensus 164 NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~ 226 (321)
T KOG0148|consen 164 NTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIG 226 (321)
T ss_pred CceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhcCceeC
Confidence 689999999999999999999999999999999999999999999999999999999999876
No 43
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.60 E-value=7.4e-08 Score=92.91 Aligned_cols=63 Identities=16% Similarity=0.262 Sum_probs=58.2
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEe---ccCceEEEEecCHHHHHHHHHhhccCcc
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---PIKGFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~---~~rgfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
.++-|||-||+-++|.+|.-++|++||+|++|++= --||.|||-|+||.||..|++-|.|..+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~ 82 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNV 82 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhccccc
Confidence 36789999999999999999999999999999984 3789999999999999999999999743
No 44
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.8e-08 Score=105.64 Aligned_cols=71 Identities=21% Similarity=0.371 Sum_probs=66.1
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEE------eccCceEEEEecCHHHHHHHHHhhccCcce----EEEEee
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF------FPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~------~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r 638 (1134)
.-|+||||.|..+|+|.-|.+.|-.||.|..|.+ -+-||||||||+..+||-+|++.|++..++ ||.|++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 3689999999999999999999999999999997 247899999999999999999999999998 888887
Q ss_pred c
Q 001164 639 V 639 (1134)
Q Consensus 639 ~ 639 (1134)
+
T Consensus 89 P 89 (298)
T KOG0111|consen 89 P 89 (298)
T ss_pred C
Confidence 7
No 45
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=1.1e-07 Score=102.42 Aligned_cols=71 Identities=21% Similarity=0.292 Sum_probs=64.0
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEee
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r 638 (1134)
-++.|=|-||+-+++|.||+++|.+||+|-.+.+++ .||||||.|.+-+||++|++.|+|.-.- ||++.+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 456699999999999999999999999999999985 6799999999999999999999997532 888776
Q ss_pred c
Q 001164 639 V 639 (1134)
Q Consensus 639 ~ 639 (1134)
+
T Consensus 268 P 268 (270)
T KOG0122|consen 268 P 268 (270)
T ss_pred C
Confidence 5
No 46
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.58 E-value=1.3e-07 Score=79.39 Aligned_cols=46 Identities=28% Similarity=0.426 Sum_probs=42.1
Q ss_pred HHHHhhccCCcceEEEeccC-ceEEEEecCHHHHHHHHHhhccCcce
Q 001164 587 IRFQIDRFGPLEHFFFFPIK-GFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 587 L~~~F~~yGpLe~v~~~~~r-gfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
|..+|++||.|+++.+.+.+ ++|||+|.+++||..|++.|+|..+.
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~ 47 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFN 47 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 67899999999999999977 99999999999999999999999765
No 47
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.55 E-value=1.8e-07 Score=101.33 Aligned_cols=67 Identities=16% Similarity=0.134 Sum_probs=59.8
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhccCcce--EEEEe
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFM 637 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~---~rgfAFVeFr~i~DAi~A~~~L~G~~~~--RI~f~ 637 (1134)
..+||||||++.+||+||++.|+.||+|++|.+.+ .++||||+|++..+|..|+ .|+|..+. +|..-
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It 76 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCIT 76 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEE
Confidence 46899999999999999999999999999999987 3489999999999999998 79999876 55444
No 48
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.55 E-value=5.1e-08 Score=111.14 Aligned_cols=72 Identities=24% Similarity=0.433 Sum_probs=66.3
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhccCcce-------EEE
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW-------RVK 635 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~~~~-------RI~ 635 (1134)
...++||||.|+-.+||.|++++|.+||-||++.+.| +||||||.|..-+-|+.|+++|+|..-. -||
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 5578999999999999999999999999999999976 8999999999999999999999998643 688
Q ss_pred Eeec
Q 001164 636 FMDV 639 (1134)
Q Consensus 636 f~r~ 639 (1134)
|+|.
T Consensus 202 FADt 205 (510)
T KOG0144|consen 202 FADT 205 (510)
T ss_pred eccc
Confidence 8877
No 49
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.51 E-value=1.5e-07 Score=93.56 Aligned_cols=70 Identities=21% Similarity=0.273 Sum_probs=64.0
Q ss_pred cccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 563 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 563 a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~------~~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
..+-...||+||||||+--++|+.|-++|++-|+|..|.+= .+=||+||||-..+||.+|++++.|.++-
T Consensus 29 ~~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd 104 (153)
T KOG0121|consen 29 QLEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD 104 (153)
T ss_pred HHHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc
Confidence 45567789999999999999999999999999999999982 36699999999999999999999999875
No 50
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.45 E-value=1.7e-07 Score=99.12 Aligned_cols=69 Identities=19% Similarity=0.286 Sum_probs=61.7
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEeec
Q 001164 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1134)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~ 639 (1134)
-.|-|-||...+|.++|+.+|++||.|-+|.|-+ +||||||-|.+-.||.+|+++|+|..+- ||.|++-
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 4689999999999999999999999999999832 7899999999999999999999999875 6666643
No 51
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.44 E-value=2.7e-07 Score=102.75 Aligned_cols=68 Identities=22% Similarity=0.308 Sum_probs=62.9
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe---c-cCceEEEEecCHHHHHHHHHhhccCcce--EEEEe
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---P-IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFM 637 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~---~-~rgfAFVeFr~i~DAi~A~~~L~G~~~~--RI~f~ 637 (1134)
-|.|+|.||+=.-.|-||+..|++||+|-+|-|. | +|||.||.|++++||.+||.+|+|..+- +||+-
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 4899999999999999999999999999999863 4 8999999999999999999999999885 77765
No 52
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.40 E-value=1.2e-06 Score=93.71 Aligned_cols=145 Identities=19% Similarity=0.218 Sum_probs=113.7
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEe-ccCc------eEEEEecCHHHHHHHHHhhccCcce-------EE
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-PIKG------FALVEYINIIDAIRAREYIRNHFSW-------RV 634 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~-~~rg------fAFVeFr~i~DAi~A~~~L~G~~~~-------RI 634 (1134)
+-|+|||..|+.||-..||--+|.+|---|.-.+. .+|+ +|||.|.+..+|++|+++|+|-++- ||
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 45999999999999999999999999888855553 3555 9999999999999999999998763 99
Q ss_pred EEeecc--------CCCCcc------------------------------------------------------------
Q 001164 635 KFMDVG--------LGTKGV------------------------------------------------------------ 646 (1134)
Q Consensus 635 ~f~r~~--------lGa~G~------------------------------------------------------------ 646 (1134)
+|+++. .|+-|.
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 998543 111000
Q ss_pred ---------cccccccccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHH
Q 001164 647 ---------INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 647 ---------~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~I 713 (1134)
-.|-.+..|..|+|++++....+||+.+=|.+|-=+-.+.++--..-|.++.+|+..|.|+.+|.++
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHL 268 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHh
Confidence 0111122588999999999999999999888853333344555577899999999999999999988
No 53
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.39 E-value=1.4e-06 Score=104.26 Aligned_cols=148 Identities=19% Similarity=0.159 Sum_probs=111.7
Q ss_pred cccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec---------cCceEEEEecCHHHHHHHHHhhccCcce-
Q 001164 563 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---------IKGFALVEYINIIDAIRAREYIRNHFSW- 632 (1134)
Q Consensus 563 a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~---------~rgfAFVeFr~i~DAi~A~~~L~G~~~~- 632 (1134)
|-+..+.++ |||-||.-+.|..+|+..|..+|.|-++.+.. +.||+||+|.+.++|.+|++.|+|+.+-
T Consensus 509 a~~~~~~t~-lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldG 587 (725)
T KOG0110|consen 509 AEDEETETK-LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDG 587 (725)
T ss_pred hhccccchh-hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecC
Confidence 355666666 99999999999999999999999999997743 2299999999999999999999999875
Q ss_pred ---EEEEeecc-CCCCccccccc-ccccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCC----CceeeEeecCH
Q 001164 633 ---RVKFMDVG-LGTKGVINGVA-VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSC----EGALLMEFRTP 703 (1134)
Q Consensus 633 ---RI~f~r~~-lGa~G~~~Gva-~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsd----e~~a~LEFeSe 703 (1134)
.+++...- -++.|- -+. -+.+..|||-||+-+-++.|+..-|-.||....+.+-.-.+ +...+++|-|.
T Consensus 588 H~l~lk~S~~k~~~~~gK--~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~ 665 (725)
T KOG0110|consen 588 HKLELKISENKPASTVGK--KKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTP 665 (725)
T ss_pred ceEEEEeccCcccccccc--ccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCc
Confidence 45554300 011110 000 12467999999999999999999888887544444411133 44478999999
Q ss_pred HHHHHHHHHH
Q 001164 704 EEATTAMAHL 713 (1134)
Q Consensus 704 EEAa~ak~~I 713 (1134)
.||.+|+.++
T Consensus 666 ~ea~nA~~al 675 (725)
T KOG0110|consen 666 REAKNAFDAL 675 (725)
T ss_pred HHHHHHHHhh
Confidence 9999998766
No 54
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.35 E-value=1.4e-06 Score=104.86 Aligned_cols=24 Identities=8% Similarity=0.282 Sum_probs=18.6
Q ss_pred ccccceecccccccCcccceeeee
Q 001164 983 QLLQYQWQGALCKSGVHYCTIYAQ 1006 (1134)
Q Consensus 983 ~~~~~qWqGsl~KsGtnyC~~~c~ 1006 (1134)
+--.+.|....++.-+..|...-+
T Consensus 625 ~Mrr~nW~kI~p~d~s~~cFWvkv 648 (1102)
T KOG1924|consen 625 PMRRFNWSKIVPRDLSENCFWVKV 648 (1102)
T ss_pred ccccCCccccCccccCccceeeec
Confidence 456688999999999999965544
No 55
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.29 E-value=9e-07 Score=105.69 Aligned_cols=72 Identities=24% Similarity=0.399 Sum_probs=63.3
Q ss_pred cccccc-cccCceEEeccCCCccCHHHHHHHhhccCCcceEEE---------eccCceEEEEecCHHHHHHHHHhhccCc
Q 001164 561 PAAMDI-FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF---------FPIKGFALVEYINIIDAIRAREYIRNHF 630 (1134)
Q Consensus 561 ~~a~dv-~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~---------~~~rgfAFVeFr~i~DAi~A~~~L~G~~ 630 (1134)
|.++|. =.-+.|||||||.+.++|..|...|++||||-+|.+ .+.+.++||.|-+-+||.+|+++|||.-
T Consensus 164 ~gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~i 243 (877)
T KOG0151|consen 164 PGSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGII 243 (877)
T ss_pred CCcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhccee
Confidence 334444 335789999999999999999999999999999998 3578999999999999999999999997
Q ss_pred ce
Q 001164 631 SW 632 (1134)
Q Consensus 631 ~~ 632 (1134)
+.
T Consensus 244 v~ 245 (877)
T KOG0151|consen 244 VM 245 (877)
T ss_pred ee
Confidence 76
No 56
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.27 E-value=1.1e-05 Score=86.71 Aligned_cols=147 Identities=15% Similarity=0.230 Sum_probs=113.4
Q ss_pred ccccccCceEEeccCCCccCHHHHHH----HhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhccCcce----
Q 001164 564 MDIFSASKQLWLGSFGPEASEAHIRF----QIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW---- 632 (1134)
Q Consensus 564 ~dv~~~s~~LWVGnL~~~vte~dL~~----~F~~yGpLe~v~~~~---~rgfAFVeFr~i~DAi~A~~~L~G~~~~---- 632 (1134)
++.+.+..+|||-||..-+-.+||+. +|++||.|-+|..+. -||=|||.|.++.-|=.|++.|+|....
T Consensus 3 ~~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 3 PMSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred ccccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 34566777999999999999999999 999999999999874 7899999999999999999999999876
Q ss_pred EEEEeecc--CCCC-----------------------cccccc----------------cccccceEEEccCCChhhHHH
Q 001164 633 RVKFMDVG--LGTK-----------------------GVINGV----------------AVGSCFHVYVGNIPNQWAKDE 671 (1134)
Q Consensus 633 RI~f~r~~--lGa~-----------------------G~~~Gv----------------a~~~s~~LwVG~iss~~~kee 671 (1134)
||-|+... +.++ --.+|- ...+++.|++-+|+...+.|.
T Consensus 83 riqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~ 162 (221)
T KOG4206|consen 83 RIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEM 162 (221)
T ss_pred heecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHH
Confidence 88888322 1111 002221 135789999999999988887
Q ss_pred HHHHHhhc-cccCCceeEecC-CCceeeEeecCHHHHHHHHHHH
Q 001164 672 ILHESYKV-VYKGPYMVTDLS-CEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 672 ilhELykf-glk~p~~ftfls-de~~a~LEFeSeEEAa~ak~~I 713 (1134)
+..-+..| |+++ ++++. -...++++|.+..+|..++..+
T Consensus 163 l~~lf~qf~g~ke---ir~i~~~~~iAfve~~~d~~a~~a~~~l 203 (221)
T KOG4206|consen 163 LSDLFEQFPGFKE---IRLIPPRSGIAFVEFLSDRQASAAQQAL 203 (221)
T ss_pred HHHHHhhCcccce---eEeccCCCceeEEecchhhhhHHHhhhh
Confidence 77666665 3444 33333 3677999999998887777665
No 57
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.18 E-value=1.7e-06 Score=94.39 Aligned_cols=61 Identities=23% Similarity=0.396 Sum_probs=58.3
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhccC
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNH 629 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~ 629 (1134)
..|+||||-|+..-+|+|++.+|..||.||.+++.+ +||+|||.|..-.||-+|++.|+|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgS 83 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGS 83 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhccc
Confidence 469999999999999999999999999999999975 7899999999999999999999997
No 58
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.17 E-value=7.4e-07 Score=108.62 Aligned_cols=141 Identities=18% Similarity=0.176 Sum_probs=115.2
Q ss_pred cccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc-----CceEEEEecCHHHHHHHHHhhccCcceEEEEeec
Q 001164 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFSWRVKFMDV 639 (1134)
Q Consensus 565 dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~-----rgfAFVeFr~i~DAi~A~~~L~G~~~~RI~f~r~ 639 (1134)
|=+-++++|++|||...+++.+|+..|+.||.++.|.|..+ --||||-|.+..-|..|+-+|.|..|..-. .++
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~-~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGT-HRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCc-ccc
Confidence 44668999999999999999999999999999999999764 379999999999999999999999876221 113
Q ss_pred cCCCCcccccccccccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 640 GLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 640 ~lGa~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
|+|. + .++++..+|||++.+-.....+..||-.||..+.+.|. -.+-++++.|++..-|..++..+|
T Consensus 446 glG~-----~-kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~--hgq~yayi~yes~~~aq~a~~~~r 512 (975)
T KOG0112|consen 446 GLGQ-----P-KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR--HGQPYAYIQYESPPAAQAATHDMR 512 (975)
T ss_pred cccc-----c-ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc--cCCcceeeecccCccchhhHHHHh
Confidence 3332 1 36789999999999999999999999988766654332 336788899999987787877775
No 59
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=2.4e-06 Score=100.31 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=63.7
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhccCcce--EEE
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW--RVK 635 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-~rgfAFVeFr~i~DAi~A~~~L~G~~~~--RI~ 635 (1134)
.+++.|||=||.+.|++++|+.+|+.||.|+.|+.-+ .+|-.||||-||+||++|.++|++..+. ||+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4689999999999999999999999999999999887 8899999999999999999999999876 666
No 60
>smart00361 RRM_1 RNA recognition motif.
Probab=98.07 E-value=7.7e-06 Score=72.26 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=42.2
Q ss_pred HHHHHHHhh----ccCCcceEE-E-e-------ccCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 584 EAHIRFQID----RFGPLEHFF-F-F-------PIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 584 e~dL~~~F~----~yGpLe~v~-~-~-------~~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
++||++.|+ +||.|.+|. + . .+||||||+|.+.+||.+|++.|+|+.+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~ 63 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD 63 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 578888888 999999985 3 2 15899999999999999999999998654
No 61
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.05 E-value=6.6e-06 Score=92.55 Aligned_cols=64 Identities=27% Similarity=0.383 Sum_probs=57.4
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
....||||+|.+.++|.||+..|.+||.|+++.+...+++|||+|..-.-|..|...+-.+.+.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI 290 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVI 290 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeee
Confidence 3679999999999999999999999999999999999999999999999997777766665543
No 62
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.03 E-value=4.8e-06 Score=91.97 Aligned_cols=63 Identities=22% Similarity=0.387 Sum_probs=58.0
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
+++-+|.||||.+.-+..||++.|++||++-+-.+.. +||||.|...+||..|+++|+|..+-
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--dy~fvh~d~~eda~~air~l~~~~~~ 138 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--DYAFVHFDRAEDAVEAIRGLDNTEFQ 138 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeec--ceeEEEEeeccchHHHHhcccccccc
Confidence 4677999999999999999999999999998887755 99999999999999999999998764
No 63
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.01 E-value=7.3e-06 Score=88.45 Aligned_cols=57 Identities=19% Similarity=0.365 Sum_probs=51.5
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhc
Q 001164 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIR 627 (1134)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~------~~rgfAFVeFr~i~DAi~A~~~L~ 627 (1134)
-++|||+|.-..++++|+.-|++||.|....+. ++|||+||.|||.+-|.+||+..+
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~ 75 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN 75 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC
Confidence 379999999999999999999999999977663 589999999999999999998754
No 64
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=3e-05 Score=89.19 Aligned_cols=177 Identities=18% Similarity=0.228 Sum_probs=119.7
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCCcceeeeecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEE
Q 001164 522 FPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFF 601 (1134)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~ 601 (1134)
|++-..|..+..++-.|||..= .+-.--|-|- .-||.. +||=||+++++..+|-+.|+.||.|-++.
T Consensus 41 yvnf~~~~da~~A~~~~n~~~~---~~~~~rim~s-~rd~~~---------~~i~nl~~~~~~~~~~d~f~~~g~ilS~k 107 (369)
T KOG0123|consen 41 YVNFQQPADAERALDTMNFDVL---KGKPIRIMWS-QRDPSL---------VFIKNLDESIDNKSLYDTFSEFGNILSCK 107 (369)
T ss_pred EEecCCHHHHHHHHHHcCCccc---CCcEEEeehh-ccCCce---------eeecCCCcccCcHHHHHHHHhhcCeeEEE
Confidence 4444556666666666777511 1112344443 234433 99999999999999999999999999999
Q ss_pred Eec----cCceEEEEecCHHHHHHHHHhhccCcce--EEEEe---eccCCCCcccccccccccceEEEccCCChhhHHHH
Q 001164 602 FFP----IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFM---DVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEI 672 (1134)
Q Consensus 602 ~~~----~rgfAFVeFr~i~DAi~A~~~L~G~~~~--RI~f~---r~~lGa~G~~~Gva~~~s~~LwVG~iss~~~keei 672 (1134)
+.. ++|| ||+|.+-+.|..|++.|+|..+. .|..+ +.. -++.-.+-..+.-..+||.+.....+.+++
T Consensus 108 v~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~--er~~~~~~~~~~~t~v~vk~~~~~~~~~~l 184 (369)
T KOG0123|consen 108 VATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE--EREAPLGEYKKRFTNVYVKNLEEDSTDEEL 184 (369)
T ss_pred EEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh--hhcccccchhhhhhhhheeccccccchHHH
Confidence 875 8899 99999999999999999998776 44333 111 011011111234556778888866666666
Q ss_pred HHHHhhccccCCcee-Eec--CCCceeeEeecCHHHHHHHHHHHH
Q 001164 673 LHESYKVVYKGPYMV-TDL--SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 673 lhELykfglk~p~~f-tfl--sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..=+..++..--..+ .+. ...+..+++|++.++|..++..++
T Consensus 185 ~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~ 229 (369)
T KOG0123|consen 185 KDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLN 229 (369)
T ss_pred HHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhcc
Confidence 665555543333322 222 247888999999999999998885
No 65
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.91 E-value=1.2e-05 Score=90.49 Aligned_cols=134 Identities=14% Similarity=0.169 Sum_probs=93.5
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHH----HhhccCcce-EEEEe
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAR----EYIRNHFSW-RVKFM 637 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~------~~rgfAFVeFr~i~DAi~A~----~~L~G~~~~-RI~f~ 637 (1134)
.+++|+||.|..+++++.|++.|++||.+....+. ++|||.||+|.+...-.+++ ..++|+.+= .-.+-
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 68999999999999999999999999999977764 38899999999655443333 336666542 00000
Q ss_pred eccCCCCcccccccccccceEEEccCCChhhHHHHHHHHhhccccCCcee----EecCCCceeeEeecCHHHHH
Q 001164 638 DVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV----TDLSCEGALLMEFRTPEEAT 707 (1134)
Q Consensus 638 r~~lGa~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f----tflsde~~a~LEFeSeEEAa 707 (1134)
++.+.+.. .-..++.++||+|+..+.++++...|.++++.....+ +....+..-++.|++++.+.
T Consensus 85 -r~~~~~~~----~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVd 153 (311)
T KOG4205|consen 85 -REDQTKVG----RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVD 153 (311)
T ss_pred -cccccccc----cccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccc
Confidence 00011100 0115889999999999999999999999886665522 33344666677777775433
No 66
>PHA03247 large tegument protein UL36; Provisional
Probab=97.89 E-value=0.00017 Score=95.78 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=10.8
Q ss_pred cccceecccccccCcccce
Q 001164 984 LLQYQWQGALCKSGVHYCT 1002 (1134)
Q Consensus 984 ~~~~qWqGsl~KsGtnyC~ 1002 (1134)
.+-.-|-|.+..+....-+
T Consensus 2958 ~~p~~~~~~~~~~~~~~pR 2976 (3151)
T PHA03247 2958 AVPQPWLGALVPGRVAVPR 2976 (3151)
T ss_pred CCCCccccccCcccccCcc
Confidence 3445567777666554443
No 67
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=97.88 E-value=2.2e-05 Score=91.81 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=58.3
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~------~~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
+.+|||||+.+++|++|..+|+..|+|-++++. .+|||||+||.+.++|..|++.|+|..+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~ 86 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN 86 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC
Confidence 899999999999999999999999999999985 27899999999999999999999998654
No 68
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.85 E-value=7.2e-05 Score=88.24 Aligned_cols=59 Identities=25% Similarity=0.413 Sum_probs=54.7
Q ss_pred EEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcc
Q 001164 573 LWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 573 LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
||||||-.+.+|++|+..|+.||+|+.|-.-. .+||+||+|.+.+||..|.+.|+|.-+
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfel 345 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFEL 345 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcccee
Confidence 99999999999999999999999999998743 689999999999999999999999443
No 69
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=97.82 E-value=2.8e-05 Score=78.38 Aligned_cols=65 Identities=23% Similarity=0.400 Sum_probs=57.8
Q ss_pred EEeccCCCccCHHHHHHHhhccCCcceEEEe---c---cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 573 LWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---P---IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 573 LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~---~---~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
|+|-++-..++|+||...|.-||+|.|+-+- + .+|||+|||+...+|-+|+++|+|..+. .|.|.
T Consensus 75 i~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 75 IFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred EEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 6899999999999999999999999999873 1 7899999999999999999999998764 45544
No 70
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=97.81 E-value=8.9e-05 Score=87.37 Aligned_cols=146 Identities=14% Similarity=0.172 Sum_probs=111.0
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhccCcce----EEEEee--
Q 001164 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD-- 638 (1134)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~------~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r-- 638 (1134)
.+|||++|+.+++.++|++.|+++|||..-.+. ..|||+||.|--.+|+-+|..++.++.+. +++++.
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 689999999999999999999999999976653 37899999999999999999999997765 666662
Q ss_pred --cc---CCCCcc----ccc------ccccccceEEEccCCChhhHHHHHHHHhhccccCCcee---EecCCCceeeEee
Q 001164 639 --VG---LGTKGV----ING------VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV---TDLSCEGALLMEF 700 (1134)
Q Consensus 639 --~~---lGa~G~----~~G------va~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f---tflsde~~a~LEF 700 (1134)
+. -|..-. +.- -...+--.|.|-|+|=+..+++|-.=|-+||...++.+ .+-.--..+++.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 21 011000 000 00123557899999999999988888888987777655 1122247788999
Q ss_pred cCHHHHHHHHHHHHHH
Q 001164 701 RTPEEATTAMAHLRQH 716 (1134)
Q Consensus 701 eSeEEAa~ak~~IRQ~ 716 (1134)
-...||..++..++-+
T Consensus 166 k~~~dA~~Al~~~N~~ 181 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGN 181 (678)
T ss_pred eeHHHHHHHHHhccCc
Confidence 9999999999888633
No 71
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.66 E-value=6.8e-06 Score=86.04 Aligned_cols=66 Identities=20% Similarity=0.323 Sum_probs=60.1
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 567 ~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
.+-|--+|||+|+-+.||.||-.+|++||.|.+|-+.| ++||||+-|+|-+--|-|++.|+|-.+.
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~ 103 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL 103 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec
Confidence 44566799999999999999999999999999999875 6799999999999999999999998665
No 72
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=97.64 E-value=0.00022 Score=78.23 Aligned_cols=147 Identities=17% Similarity=0.243 Sum_probs=102.4
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhccCcce------EEEEee
Q 001164 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFMD 638 (1134)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~------~~rgfAFVeFr~i~DAi~A~~~L~G~~~~------RI~f~r 638 (1134)
-+|||..|+-..|..|||.+|++||.|-.-++. -+||-+||-|..-+||..|.+.|+|+..- .|+|+.
T Consensus 128 aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFan 207 (360)
T KOG0145|consen 128 ANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFAN 207 (360)
T ss_pred cceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecC
Confidence 479999999999999999999999998755542 28999999999999999999999999874 788882
Q ss_pred --------------------ccCCC------C---------------------cccccccc-------cccceEEEccCC
Q 001164 639 --------------------VGLGT------K---------------------GVINGVAV-------GSCFHVYVGNIP 664 (1134)
Q Consensus 639 --------------------~~lGa------~---------------------G~~~Gva~-------~~s~~LwVG~is 664 (1134)
...|. + +-|.|.++ +.---|+|=+++
T Consensus 208 nPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLs 287 (360)
T KOG0145|consen 208 NPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLS 287 (360)
T ss_pred CcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecC
Confidence 10010 0 01222222 124458888999
Q ss_pred ChhhHHHHHHHHhhccccCCc-eeEecC---CCceeeEeecCHHHHHHHHHHHHHHh
Q 001164 665 NQWAKDEILHESYKVVYKGPY-MVTDLS---CEGALLMEFRTPEEATTAMAHLRQHR 717 (1134)
Q Consensus 665 s~~~keeilhELykfglk~p~-~ftfls---de~~a~LEFeSeEEAa~ak~~IRQ~r 717 (1134)
+..++--+-+-|--||-.--. -++++. .+...++-..+.+||+-++..++-+|
T Consensus 288 pd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~ 344 (360)
T KOG0145|consen 288 PDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYR 344 (360)
T ss_pred CCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcc
Confidence 887655544444334432222 223333 35566788889999999988886444
No 73
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.53 E-value=0.0082 Score=73.78 Aligned_cols=63 Identities=13% Similarity=0.201 Sum_probs=50.4
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHHHHh
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IRQ~r 717 (1134)
.-|+.||||+|+..+.+++|-+-|..||-.. .+.-+..+..++|--++..||.+|+.+|+.+-
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiq--Si~li~~R~cAfI~M~~RqdA~kalqkl~n~k 481 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQ--SIILIPPRGCAFIKMVRRQDAEKALQKLSNVK 481 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccce--eEeeccCCceeEEEEeehhHHHHHHHHHhccc
Confidence 3699999999999998888777776665333 35666778889999999999999999997433
No 74
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.52 E-value=0.00011 Score=86.72 Aligned_cols=140 Identities=17% Similarity=0.171 Sum_probs=105.1
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhccCcceEEEEe--ecc-
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSWRVKFM--DVG- 640 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~------~~rgfAFVeFr~i~DAi~A~~~L~G~~~~RI~f~--r~~- 640 (1134)
.+++++=-|...+++.||++.|+.+|+|+.|.+. +.+|-|||||-|..---.|+ +|.|+++.-+..+ -.+
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHH
Confidence 4566777788899999999999999999999984 47899999999765544443 9999987633322 111
Q ss_pred -----------CCCCcccccccccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec---CCCceeeEeecCHHH
Q 001164 641 -----------LGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEE 705 (1134)
Q Consensus 641 -----------lGa~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl---sde~~a~LEFeSeEE 705 (1134)
++.+|+ +++-..||||++.....++.+..-|--||.+.-+.. .+. ...+.-+++|.+.|+
T Consensus 258 eknr~a~~s~a~~~k~~-----~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 258 EKNRAANASPALQGKGF-----TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred HHHHHHhcccccccccc-----ccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 233333 344444999999999999999998888887776644 332 346777899999999
Q ss_pred HHHHHHHHHH
Q 001164 706 ATTAMAHLRQ 715 (1134)
Q Consensus 706 Aa~ak~~IRQ 715 (1134)
|..|...++-
T Consensus 333 ar~a~e~lng 342 (549)
T KOG0147|consen 333 ARKALEQLNG 342 (549)
T ss_pred HHHHHHHhcc
Confidence 9999887743
No 75
>PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways. They are large proteins characterised by N-terminal RNA-binding motifs and a highly conserved C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. The function of the SPOC domain is unknown, but the SPOC domain of the SHARP Spen protein has been implicated in the interaction of SHARP with the SMRT/NcoR corepressor, where SHARP plays an essential role in the repressor complex []. The SPOC domain is folded into a single compact domain consisting of a beta-barrel with seven strands framed by six alpha helices. A number of deep grooves and clefts in the surface, plus two nonpolar loops, render the SPOC domain well suited to protein-protein interactions; most of the conserved residues occur on the protein surface rather than in the core. Other proteins containing a SPOC domain include drosophila Split ends, which promotes sclerite development in the head and restricts it in the thorax, and mouse MINT (homologue of SHARP), which is involved in skeletal and neuronal development via its repression of Msx2.; PDB: 1OW1_A.
Probab=97.47 E-value=5.4e-06 Score=79.24 Aligned_cols=112 Identities=24% Similarity=0.417 Sum_probs=70.3
Q ss_pred ecccccccCcccceeeeeeccCcccccc-cCCCCCCCccccccCCccchhhhhccccccC-CCCCcccccccc-----CC
Q 001164 989 WQGALCKSGVHYCTIYAQREESDICKYT-HDISEPAEWPAKLDMTKRTDFRHVKSTFTST-PPNKREVCRLVP-----SS 1061 (1134)
Q Consensus 989 WqGsl~KsGtnyC~~~c~~vdsdIC~~~-n~apEPtvWPs~lD~T~RtDfd~LEslFs~t-PP~kkEVcrLvP-----~s 1061 (1134)
|+|.|...++..|.+.++-+..+ +... +.......|+..++..-|.+.+.+....... .+..++||.+.. ..
T Consensus 1 W~G~i~m~~~~~f~~~a~~v~G~-~~~~~~~l~~~~~~p~~i~i~gRl~~~~~~~yl~~i~~s~~~~v~v~~~~~~~~~~ 79 (119)
T PF07744_consen 1 WQGTISMKSVASFSARAHFVSGN-CDLLDNVLPWQQLPPKKIDIRGRLDPEKVWDYLRQIRKSRSKDVCVVALSSPESDS 79 (119)
T ss_dssp EEEEEEETT-EEEEEEEEEEEE--HHHHHHHS-------EEE-EEEE-SHHHHHHHHHHTSSTTT-EEEEEEE-SSHHHH
T ss_pred CceEEEcCCCCeEEEEEEEEEcc-hhHhhhhcccccCCCcEEEEEeecCHHHHHHHHHhcccCCCceEEEEEEcCCcccC
Confidence 99999999999999999876443 3222 3444558889999999999998887665543 333458887755 45
Q ss_pred CCCchhhhhHHHHhhhccccceEeccchhhHHHhhhhccc
Q 001164 1062 PGDHKGFQDFVSYLKQRECAGVIKIPAVKSIWARLMFILP 1101 (1134)
Q Consensus 1062 ~~D~k~fqdFi~yL~Qk~cAgvIKip~~~~~i~~~L~lvP 1101 (1134)
..+...|++|+.||.+|+|+||++++.....+-.-||++|
T Consensus 80 ~~~~~~~~~l~~Yl~~k~r~GVv~~~~~~~~~~~dlYl~P 119 (119)
T PF07744_consen 80 NSDRRPFQKLVDYLKSKQRAGVVSVGNSPSGQVKDLYLFP 119 (119)
T ss_dssp HHHHHHHHHTHHHHHHHTEEEEEEE--TT--S-EEEEEE-
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEecCCCCCCceeEEEEcC
Confidence 5566789999999999999999999873222334455554
No 76
>PHA03247 large tegument protein UL36; Provisional
Probab=97.46 E-value=0.0012 Score=88.26 Aligned_cols=27 Identities=11% Similarity=0.308 Sum_probs=17.6
Q ss_pred Cccccccchh-hhhhhhhhhhhhccCCC
Q 001164 168 TSSVIRGICS-AVFHNVLDFFISSFDGK 194 (1134)
Q Consensus 168 ~s~~~~~ics-~v~~~vl~ff~~~~~g~ 194 (1134)
+..|+-|+|+ +.|.+.=.=|+..++-|
T Consensus 1761 s~~~V~~Lrad~~Y~RLPak~~g~i~aK 1788 (3151)
T PHA03247 1761 ATNTVLGLRADAHYERLPAKYQGALGAK 1788 (3151)
T ss_pred HHHHHHhhhcchhhccCCHHHhchhhHH
Confidence 4457778886 46666666666666655
No 77
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.44 E-value=0.00073 Score=77.86 Aligned_cols=144 Identities=17% Similarity=0.182 Sum_probs=111.2
Q ss_pred cCceEEeccCCCc-cCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhccCcce--EEEEe--e---c
Q 001164 569 ASKQLWLGSFGPE-ASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFM--D---V 639 (1134)
Q Consensus 569 ~s~~LWVGnL~~~-vte~dL~~~F~~yGpLe~v~~~~-~rgfAFVeFr~i~DAi~A~~~L~G~~~~--RI~f~--r---~ 639 (1134)
.++-|-|-||-.+ ||.+-|.-+|+-||.+-.|.++. .+--|+|.|-|+-.|.-|++.|+|+.+| +||.. + .
T Consensus 296 ~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 296 ANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNV 375 (492)
T ss_pred CceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccc
Confidence 3788999999887 99999999999999999999877 6789999999999999999999999998 55554 1 2
Q ss_pred cCCC-----Ccc--------cc-----ccc-----ccccceEEEccCCChhhHHHHHHHHhhccccCCceeEecC-CCce
Q 001164 640 GLGT-----KGV--------IN-----GVA-----VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS-CEGA 695 (1134)
Q Consensus 640 ~lGa-----~G~--------~~-----Gva-----~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfls-de~~ 695 (1134)
+++. +|+ +. |.. --+|..|-..+||..+.+|++..-+..-|--.- .|.|+. ++.+
T Consensus 376 qlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vk-afkff~kd~km 454 (492)
T KOG1190|consen 376 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVK-AFKFFQKDRKM 454 (492)
T ss_pred cCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEE-eeeecCCCcce
Confidence 2222 111 00 100 126888889999999999998877776432211 456665 7799
Q ss_pred eeEeecCHHHHHHHHHHH
Q 001164 696 LLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 696 a~LEFeSeEEAa~ak~~I 713 (1134)
+++.+++.|||..+..-+
T Consensus 455 al~q~~sveeA~~ali~~ 472 (492)
T KOG1190|consen 455 ALPQLESVEEAIQALIDL 472 (492)
T ss_pred eecccCChhHhhhhcccc
Confidence 999999999999887655
No 78
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.38 E-value=0.0003 Score=75.13 Aligned_cols=72 Identities=21% Similarity=0.210 Sum_probs=60.5
Q ss_pred cCceEEeccCCCccCHHHHHHHhhcc-CCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRF-GPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~y-GpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
...-+||+.++...-|.++...|.+| |.+..|+..| +||||||||++.+.|.=|-+.|++-.+. ..+||
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 34568999999999999999999999 8999999865 6799999999999996666999997665 56666
Q ss_pred ecc
Q 001164 638 DVG 640 (1134)
Q Consensus 638 r~~ 640 (1134)
-++
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 553
No 79
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=97.36 E-value=0.0017 Score=76.46 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=41.3
Q ss_pred cccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcc
Q 001164 563 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRN 628 (1134)
Q Consensus 563 a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-~rgfAFVeFr~i~DAi~A~~~L~G 628 (1134)
.+||+... -|| |.||-..|++|-+=.-|..|- +.++|=++|-+++||-.=++.++-
T Consensus 81 l~di~~~r-liW---------dqELY~nf~y~q~r~ffhtFegddc~aGLnF~~E~EA~~F~k~V~~ 137 (569)
T KOG3671|consen 81 LVDIVNNR-LIW---------DQELYQNFEYRQPRTFFHTFEGDDCQAGLNFASEEEAQKFRKKVQD 137 (569)
T ss_pred EeeecCce-eee---------hHHhhhhceeccCccceeeeccccceeeecccCHHHHHHHHHHHHH
Confidence 34555544 666 899999999999765555555 889999999999999555444443
No 80
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.26 E-value=0.00022 Score=76.95 Aligned_cols=65 Identities=15% Similarity=0.283 Sum_probs=56.6
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec--cCceEEEEecCHHHHHHHHHhhccCcc
Q 001164 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 567 ~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~--~rgfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
..++-+|||.||+++++|++|+.+|.+|--..-+++.. .---|||+|++|+.|-+|+.-|||..+
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 46788999999999999999999999998877777643 334799999999999999999999843
No 81
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00057 Score=77.52 Aligned_cols=85 Identities=18% Similarity=0.262 Sum_probs=73.3
Q ss_pred eeeecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccC------ceEEEEecCHHHHHHHHHhhc
Q 001164 554 VWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK------GFALVEYINIIDAIRAREYIR 627 (1134)
Q Consensus 554 ~~~~~g~~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~r------gfAFVeFr~i~DAi~A~~~L~ 627 (1134)
+.-.=||----||..|-|-|||-.|-|-+|.+||+-+|++||+|.+--+.+.+ -||||||++-+.-++|.=-|+
T Consensus 223 iLEmvGDlpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMd 302 (479)
T KOG0415|consen 223 ILEMVGDLPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMD 302 (479)
T ss_pred HHHHhcCCcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhc
Confidence 34456777778999999999999999999999999999999999998887644 699999999999999999999
Q ss_pred cCcce--E--EEEee
Q 001164 628 NHFSW--R--VKFMD 638 (1134)
Q Consensus 628 G~~~~--R--I~f~r 638 (1134)
+-.+- | |.|-+
T Consensus 303 NvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 303 NVLIDDRRIHVDFSQ 317 (479)
T ss_pred ceeeccceEEeehhh
Confidence 97764 4 45543
No 82
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.17 E-value=0.0013 Score=78.31 Aligned_cols=76 Identities=24% Similarity=0.346 Sum_probs=70.5
Q ss_pred ecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCc
Q 001164 557 FDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHF 630 (1134)
Q Consensus 557 ~~g~~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~ 630 (1134)
++..+++-||---.++++||+|+...+++.++++.+-||+|..|.++. ++||||-||-+.-..-.|+..|+|..
T Consensus 276 ~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~ 355 (500)
T KOG0120|consen 276 VGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQ 355 (500)
T ss_pred cCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhh
Confidence 488888888888899999999999999999999999999999999753 68999999999999999999999998
Q ss_pred ce
Q 001164 631 SW 632 (1134)
Q Consensus 631 ~~ 632 (1134)
++
T Consensus 356 lg 357 (500)
T KOG0120|consen 356 LG 357 (500)
T ss_pred hc
Confidence 77
No 83
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.12 E-value=0.0016 Score=79.17 Aligned_cols=142 Identities=18% Similarity=0.207 Sum_probs=100.7
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCc-eEEEEecCHHHHHHHHHhhccCcce----EEEEeeccC----
Q 001164 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKG-FALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL---- 641 (1134)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rg-fAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~~l---- 641 (1134)
..+.||||+-++..++|...|.+||+|..|. +++-| -|+|+|.+..||..|.+.|..+.+. +.+-++.++
T Consensus 386 ~vil~kNlpa~t~~~elt~~F~~fG~i~rvl-lp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~ 464 (725)
T KOG0110|consen 386 TVILVKNLPAGTLSEELTEAFLRFGEIGRVL-LPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTED 464 (725)
T ss_pred ceeeeccCccccccHHHHHHhhcccccceee-cCcccceeeeeecCccchHHHHHHhchhhhccCccccccChhhhccCC
Confidence 5689999999999999999999999999994 45444 5999999999999999999998764 112111100
Q ss_pred ----------CC-------------Ccc------------cccccc---cccceEEEccCCChhhHHHHHHHHhhccccC
Q 001164 642 ----------GT-------------KGV------------INGVAV---GSCFHVYVGNIPNQWAKDEILHESYKVVYKG 683 (1134)
Q Consensus 642 ----------Ga-------------~G~------------~~Gva~---~~s~~LwVG~iss~~~keeilhELykfglk~ 683 (1134)
+. +|. +.-++. +.++ |||-|+.=....+.++..|.+.|..-
T Consensus 465 pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~-lfvkNlnf~Tt~e~l~~~F~k~G~Vl 543 (725)
T KOG0110|consen 465 PKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETK-LFVKNLNFDTTLEDLEDLFSKQGTVL 543 (725)
T ss_pred ccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchh-hhhhcCCcccchhHHHHHHHhcCeEE
Confidence 00 000 000000 1233 99999988899999999998865322
Q ss_pred CceeE-------ecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 684 PYMVT-------DLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 684 p~~ft-------flsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+.+. ..-+-+..+|+|++.++|..++..|.
T Consensus 544 S~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lq 581 (725)
T KOG0110|consen 544 SIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQ 581 (725)
T ss_pred EEEEeccccccccccccceeEEEecCHHHHHHHHHHhc
Confidence 22221 12234889999999999999988873
No 84
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=97.05 E-value=0.00078 Score=71.04 Aligned_cols=68 Identities=21% Similarity=0.356 Sum_probs=58.9
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceE-EEe------ccCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHF-FFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v-~~~------~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
+-+|+||||.+++.|.-|-..|+.||.|-+- .+. .++|||||+|++-+-+.+|++.|+|+.++ ++.++
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 3789999999999999999999999999762 121 37899999999999999999999999998 55555
No 85
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.03 E-value=0.0006 Score=79.78 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=50.2
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec----cC--ceEEEEecCHHHHHHHHHhh
Q 001164 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IK--GFALVEYINIIDAIRAREYI 626 (1134)
Q Consensus 567 ~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~----~r--gfAFVeFr~i~DAi~A~~~L 626 (1134)
......|||+||++|+++++|++.|..||+|+...|.. .+ .||||+|++-+++..|+++=
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC
Confidence 33344499999999999999999999999999888754 22 89999999999998777653
No 86
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=96.94 E-value=0.00086 Score=73.61 Aligned_cols=73 Identities=18% Similarity=0.339 Sum_probs=57.7
Q ss_pred CCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEE------eccCceEEEEecCHHHHHHHHHhhccCcc
Q 001164 559 EDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF------FPIKGFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 559 g~~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~------~~~rgfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
.||.-.+-=.-.=.++-|.||++++.+.|-..|.+|=.--.-.+ ...+||.||-|++++|+++|+++|+|+-+
T Consensus 179 edPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV 257 (290)
T KOG0226|consen 179 EDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV 257 (290)
T ss_pred CCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc
Confidence 44444444344557899999999999999999999976443333 34789999999999999999999999843
No 87
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=96.84 E-value=0.0021 Score=76.34 Aligned_cols=63 Identities=17% Similarity=0.298 Sum_probs=55.5
Q ss_pred ccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhh
Q 001164 564 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYI 626 (1134)
Q Consensus 564 ~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~------~~rgfAFVeFr~i~DAi~A~~~L 626 (1134)
.|=+...++|||-||+-++||++|...|++||+|+.+.+. +++|.|||.|+...+|..++++.
T Consensus 286 ~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 286 RENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred cccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 3456677999999999999999999999999999988874 48899999999999988777766
No 88
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.67 E-value=0.0057 Score=70.12 Aligned_cols=135 Identities=19% Similarity=0.151 Sum_probs=97.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce--------------E
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW--------------R 633 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~--------------R 633 (1134)
++|--+-|-+|-..|+|+||-+..+.||+|--|+.-+-+--|+|||+||+-|.+++..---..+. +
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~ 108 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQC 108 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccchhhh
Confidence 45667889999999999999999999999999999998889999999999998887654333322 2
Q ss_pred EEEeeccCCCCcccccccccccceEEEccCCCh-hhHHHHHHHHhh-ccccCCceeEecCCCceeeEeecCHHHHHHHHH
Q 001164 634 VKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQ-WAKDEILHESYK-VVYKGPYMVTDLSCEGALLMEFRTPEEATTAMA 711 (1134)
Q Consensus 634 I~f~r~~lGa~G~~~Gva~~~s~~LwVG~iss~-~~keeilhELyk-fglk~p~~ftflsde~~a~LEFeSeEEAa~ak~ 711 (1134)
|+ |+| --..++++.|.+-=+-.+ -++-++++-+-+ .|+.-. ..+|-..--++.+||++.+-|++|++
T Consensus 109 i~--R~g--------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlR-IvIfkkngVQAmVEFdsv~~AqrAk~ 177 (494)
T KOG1456|consen 109 IE--RPG--------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLR-IVIFKKNGVQAMVEFDSVEVAQRAKA 177 (494)
T ss_pred hc--cCC--------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEE-EEEEeccceeeEEeechhHHHHHHHh
Confidence 32 111 012346777777666555 455667766665 232221 23555567788999999999999988
Q ss_pred HH
Q 001164 712 HL 713 (1134)
Q Consensus 712 ~I 713 (1134)
.|
T Consensus 178 al 179 (494)
T KOG1456|consen 178 AL 179 (494)
T ss_pred hc
Confidence 76
No 89
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.66 E-value=0.0024 Score=73.71 Aligned_cols=76 Identities=29% Similarity=0.406 Sum_probs=68.0
Q ss_pred ccccccCceEEeccCCCccCHHHHHHHhhccCCc-ceEEEec-cCceEEEEecCHHHHHHHHHhhccCcce-----EEEE
Q 001164 564 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPL-EHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW-----RVKF 636 (1134)
Q Consensus 564 ~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpL-e~v~~~~-~rgfAFVeFr~i~DAi~A~~~L~G~~~~-----RI~f 636 (1134)
..|+++|.+|-+.||+++++|+||+..|..-|-. ..|.|+. +|.+|++.++++++|+.|.-+|+.+.++ ||-|
T Consensus 408 ~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 408 QNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred cccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 3688999999999999999999999999999887 6788888 9999999999999999999999998765 6666
Q ss_pred eec
Q 001164 637 MDV 639 (1134)
Q Consensus 637 ~r~ 639 (1134)
-.+
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 544
No 90
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=96.65 E-value=0.0017 Score=70.86 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=56.0
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~------~~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
...+||||+.-.+|..+++..|+-+|.|..|.+- .++|||||+|.+.+.++.|.. |+|..+-
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~ 168 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP 168 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc
Confidence 5789999999999999999999999999877662 378999999999999999999 9998764
No 91
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=96.64 E-value=0.0026 Score=72.56 Aligned_cols=62 Identities=21% Similarity=0.372 Sum_probs=53.0
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccC
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNH 629 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~ 629 (1134)
+.-+.+||.++-+|.+|+||...|+-||+|..-.+++ -|||.|+||.+..---+|+-.|+-.
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlF 275 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLF 275 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchh
Confidence 4468899999999999999999999999999988875 5799999999987666666666654
No 92
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.58 E-value=0.002 Score=79.88 Aligned_cols=74 Identities=22% Similarity=0.291 Sum_probs=68.7
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce------EEEEeec
Q 001164 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFMDV 639 (1134)
Q Consensus 566 v~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~------RI~f~r~ 639 (1134)
-.+++..||||.||+-..-.-|..+|.+||+|+.+.......||+|.|++..-|.+|++.|+|..++ ||.|+..
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 4677899999999999999999999999999999999889999999999999999999999999887 7777743
No 93
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.45 E-value=0.098 Score=59.99 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=36.1
Q ss_pred cceEEEccCCChhhHHHHHHHHhhccccCCceeEec------CCCceeeEeecCHH
Q 001164 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL------SCEGALLMEFRTPE 704 (1134)
Q Consensus 655 s~~LwVG~iss~~~keeilhELykfglk~p~~ftfl------sde~~a~LEFeSeE 704 (1134)
--.+|||++-=.+++++++.-++..|+..-..++|+ .++..++|-.-+..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdA 135 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDA 135 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchH
Confidence 346899999988899999999988776654445554 34666777666653
No 94
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=96.29 E-value=0.0041 Score=68.83 Aligned_cols=64 Identities=19% Similarity=0.140 Sum_probs=59.4
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
..|||||=.|+-.-.+.||-..|..||-|.+-++|- +|-|.||-|.|+.-|-+|+.+|+|.-++
T Consensus 284 eGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIG 353 (371)
T KOG0146|consen 284 EGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIG 353 (371)
T ss_pred CcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhh
Confidence 589999999999999999999999999999887763 6789999999999999999999998766
No 95
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.19 E-value=0.2 Score=59.91 Aligned_cols=125 Identities=17% Similarity=0.283 Sum_probs=81.4
Q ss_pred eeeecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEE--------eccCc---eEEEEecCHHH---H
Q 001164 554 VWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF--------FPIKG---FALVEYINIID---A 619 (1134)
Q Consensus 554 ~~~~~g~~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~--------~~~rg---fAFVeFr~i~D---A 619 (1134)
.|..-.-+----.-.-|++++||.|+.+++|+.|-.-|.+||++--=|= ++++| |+|+.|++-.- -
T Consensus 243 ~~~~~~~~~~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~L 322 (520)
T KOG0129|consen 243 TWSGSLPPRGYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSL 322 (520)
T ss_pred hhccccCCCCCCccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHH
Confidence 3443333333344455899999999999999999999999999865554 45888 99999987543 3
Q ss_pred HHHHHhhccCcce-----EEEEeeccC------CCCccccc-ccccccceEEEccCCChhhHHHHHHHHhh
Q 001164 620 IRAREYIRNHFSW-----RVKFMDVGL------GTKGVING-VAVGSCFHVYVGNIPNQWAKDEILHESYK 678 (1134)
Q Consensus 620 i~A~~~L~G~~~~-----RI~f~r~~l------Ga~G~~~G-va~~~s~~LwVG~iss~~~keeilhELyk 678 (1134)
+.|+..=.++-.. +++=+.+++ -+...+++ ...-+.|.|+||+++--..-+||-+-+-.
T Consensus 323 l~aC~~~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~ 393 (520)
T KOG0129|consen 323 LSACSEGEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMED 393 (520)
T ss_pred HHHHhhcccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHH
Confidence 6676663333222 222111110 01111110 11347999999999999888887766665
No 96
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=96.11 E-value=0.0087 Score=65.97 Aligned_cols=59 Identities=19% Similarity=0.134 Sum_probs=54.5
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhccC
Q 001164 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNH 629 (1134)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~ 629 (1134)
-.|+|.||...|+++||+++|+.||.+..+.+.. +.|.|-|.|..-.||++|++-++|-
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv 147 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGV 147 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCc
Confidence 5699999999999999999999999999999853 5599999999999999999999994
No 97
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=96.02 E-value=0.013 Score=49.70 Aligned_cols=57 Identities=25% Similarity=0.370 Sum_probs=46.3
Q ss_pred EEEccCCChhhHHHHHHHHhhccccCCcee-Ee--cCCCceeeEeecCHHHHHHHHHHHH
Q 001164 658 VYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD--LSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 658 LwVG~iss~~~keeilhELykfglk~p~~f-tf--lsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
||||+++..+++++|.+-|..+|....+.+ .. -.....++++|.+.++|..++..+.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~ 60 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELN 60 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcC
Confidence 799999999999999999998876655433 22 1237788899999999999998774
No 98
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=95.90 E-value=0.34 Score=56.97 Aligned_cols=17 Identities=24% Similarity=0.155 Sum_probs=10.1
Q ss_pred HHHhhhhcccCcccccc
Q 001164 1092 IWARLMFILPYSQDICS 1108 (1134)
Q Consensus 1092 ~i~~~L~lvPeS~e~~s 1108 (1134)
+.||+..++=++++..+
T Consensus 493 LsRRiaveysdseDdss 509 (518)
T KOG1830|consen 493 LSRRIAVEYSDSEDDSS 509 (518)
T ss_pred HHHHHHHHhccCccccc
Confidence 44666666666655544
No 99
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=95.89 E-value=0.017 Score=50.00 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=42.3
Q ss_pred EEEccCCChhhHHHHHHHHhhccccCCceeEecC---CCceeeEeecCHHHHHHHHHHH
Q 001164 658 VYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS---CEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 658 LwVG~iss~~~keeilhELykfglk~p~~ftfls---de~~a~LEFeSeEEAa~ak~~I 713 (1134)
|||++|+..+++++|...|..++....+.+..-. .+..++++|.+.++|..++...
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~ 59 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELL 59 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHC
Confidence 7999999999999999999887754443332211 2688999999999999998765
No 100
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=95.89 E-value=0.16 Score=59.62 Aligned_cols=15 Identities=27% Similarity=0.237 Sum_probs=7.6
Q ss_pred EecCCCceeeEeecC
Q 001164 688 TDLSCEGALLMEFRT 702 (1134)
Q Consensus 688 tflsde~~a~LEFeS 702 (1134)
+-.+|+..=+|.|+|
T Consensus 138 tpYRDdgk~gLkfYT 152 (518)
T KOG1830|consen 138 TPYRDDGKDGLKFYT 152 (518)
T ss_pred CccccCCcccceeec
Confidence 444555555555554
No 101
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=95.77 E-value=0.019 Score=62.35 Aligned_cols=66 Identities=17% Similarity=0.256 Sum_probs=61.9
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 567 ~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
..+.+-|++-||+..++.+.|..+|+.|+-.+.|++.+ .++.|||+|.+-..|-.|+..|+|.++-
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceec
Confidence 56789999999999999999999999999999999887 8899999999999999999999998764
No 102
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=95.71 E-value=0.0049 Score=66.75 Aligned_cols=65 Identities=15% Similarity=0.019 Sum_probs=57.9
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~----~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
...++|||||+...|+|+.|.++|-.=||+..|.+-. ...||||+|++------|++-|+|-.+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~ 75 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLE 75 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhc
Confidence 3568999999999999999999999999999999853 3359999999998889999999998765
No 103
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=95.42 E-value=0.035 Score=56.39 Aligned_cols=63 Identities=13% Similarity=0.083 Sum_probs=50.4
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec---CCCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl---sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
-..++.|||++|+...++++|...|.+++-...+.+ ++. ..+..++++|.+.++|..|+..+.
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ln 97 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMD 97 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC
Confidence 346889999999999999999999998775554433 222 346889999999999999998763
No 104
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=95.41 E-value=0.043 Score=67.84 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=11.7
Q ss_pred cCCCccceEEEEeecCCc
Q 001164 1112 IAPNSSDCLVALVLPKET 1129 (1134)
Q Consensus 1112 va~d~~eCLIalvlP~e~ 1129 (1134)
+..++++||..+ +|||.
T Consensus 473 L~~~~ve~L~r~-lPTe~ 489 (830)
T KOG1923|consen 473 LSLEPVELLQRI-LPTEA 489 (830)
T ss_pred cCCcHHHHHHhc-CCchH
Confidence 446677777777 77764
No 105
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=95.24 E-value=0.025 Score=59.87 Aligned_cols=58 Identities=28% Similarity=0.303 Sum_probs=48.5
Q ss_pred cceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHH
Q 001164 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 655 s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~I 713 (1134)
.+.||||++.+...|.||+.+|.+++....+-+.. .-...++|||+...||..|..+|
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~L 67 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYL 67 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhc
Confidence 67899999999999999999999877443333333 55788999999999999998888
No 106
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=95.06 E-value=0.24 Score=59.13 Aligned_cols=138 Identities=17% Similarity=0.149 Sum_probs=95.2
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHH---hhccCcceEEEEeecc---
Q 001164 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRARE---YIRNHFSWRVKFMDVG--- 640 (1134)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~----~rgfAFVeFr~i~DAi~A~~---~L~G~~~~RI~f~r~~--- 640 (1134)
..|=+-.|+=++|+.||+..|+-.+ |++|.+-+ +.|=|||||.+-+|+..|++ +..|++ -|++--.+
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~R--YIEVf~~~~~e 87 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHR--YIEVFTAGGAE 87 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCc--eEEEEccCCcc
Confidence 3455678999999999999999886 88888865 57999999999999988875 344443 23322111
Q ss_pred ----CCCCcccccccccccceEEEccCCChhhHHHHHHHHhhccccCC-c-ee--EecCCCceeeEeecCHHHHHHHHHH
Q 001164 641 ----LGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGP-Y-MV--TDLSCEGALLMEFRTPEEATTAMAH 712 (1134)
Q Consensus 641 ----lGa~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p-~-~f--tflsde~~a~LEFeSeEEAa~ak~~ 712 (1134)
+...|.-+ ....-.|-+-++|=..+++||.+-|.-..+... + +. .-.+....+++.|++.|.|.+|+..
T Consensus 88 ~d~~~~~~g~~s---~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 88 ADWVMRPGGPNS---SANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred ccccccCCCCCC---CCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH
Confidence 11111100 123456778899999999999988876433322 2 12 2224567899999999999998877
Q ss_pred HH
Q 001164 713 LR 714 (1134)
Q Consensus 713 IR 714 (1134)
.|
T Consensus 165 hr 166 (510)
T KOG4211|consen 165 HR 166 (510)
T ss_pred HH
Confidence 65
No 107
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=94.90 E-value=0.018 Score=65.51 Aligned_cols=62 Identities=18% Similarity=0.425 Sum_probs=48.9
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhccCcc
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~------~~rgfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
.+++++||.|+.+++|.|++..|++||.|..+.+. +.|||+||.|.+- |+++-.-...-+.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e-~sVdkv~~~~f~~~ 163 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSE-DSVDKVTLQKFHDF 163 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccc-cccceecccceeee
Confidence 78999999999999999999999999988866652 5899999999874 44444344444433
No 108
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=94.82 E-value=0.023 Score=55.71 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=34.5
Q ss_pred HHHHhh-cccc--CCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 673 LHESYK-VVYK--GPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 673 lhELyk-fglk--~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.||+|. |.|. ++++++|..++|.++|+|++++||..+++.+.
T Consensus 58 eqElY~~f~y~~~r~fFhtFe~d~c~~GL~Fade~EA~~F~k~v~ 102 (105)
T cd01205 58 EQELYDNFEYQQPRPFFHTFEGDDCVVGLNFADETEAAEFRKKVL 102 (105)
T ss_pred EEEcccCcEEccCCCcEEEEeccCcEEEEEECCHHHHHHHHHHHH
Confidence 467776 4444 45577999999999999999999999998874
No 109
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=94.73 E-value=0.097 Score=50.66 Aligned_cols=68 Identities=13% Similarity=0.249 Sum_probs=52.6
Q ss_pred eEEeccCCCccCHHHHHHHhhcc--CCcceEEE------eccCceEEEEecCHHHHHHHHHhhccCcc--------eEEE
Q 001164 572 QLWLGSFGPEASEAHIRFQIDRF--GPLEHFFF------FPIKGFALVEYINIIDAIRAREYIRNHFS--------WRVK 635 (1134)
Q Consensus 572 ~LWVGnL~~~vte~dL~~~F~~y--GpLe~v~~------~~~rgfAFVeFr~i~DAi~A~~~L~G~~~--------~RI~ 635 (1134)
+|-|-||++.-|.++|.+++... |..|=|.+ -...|||||+|.+..+|+.-.+.++|+.. |.|.
T Consensus 3 TvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~ 82 (97)
T PF04059_consen 3 TVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEIS 82 (97)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEe
Confidence 57789999999999999988775 33332222 12679999999999999999999999853 3566
Q ss_pred Eeec
Q 001164 636 FMDV 639 (1134)
Q Consensus 636 f~r~ 639 (1134)
+++.
T Consensus 83 yAri 86 (97)
T PF04059_consen 83 YARI 86 (97)
T ss_pred hhHh
Confidence 6655
No 110
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=94.62 E-value=0.1 Score=64.76 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=8.4
Q ss_pred chhhhhcccccc
Q 001164 1035 TDFRHVKSTFTS 1046 (1134)
Q Consensus 1035 tDfd~LEslFs~ 1046 (1134)
.|++.++..|..
T Consensus 401 lD~~~~ee~Fk~ 412 (830)
T KOG1923|consen 401 LDFSRFEEQFKI 412 (830)
T ss_pred hhHHHHHHHHHh
Confidence 477777777765
No 111
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=94.13 E-value=0.69 Score=53.47 Aligned_cols=144 Identities=16% Similarity=0.155 Sum_probs=101.8
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcc--------eEEEec-----cCceEEEEecCHHHHHHHHHhhccCcce----
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLE--------HFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW---- 632 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGpLe--------~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~~~~---- 632 (1134)
..++||-+|+.|+|-+|+.++|+++|-|- .+.+|+ -+|=|++-|-.-+--.-|++-|++..+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 45699999999999999999999999874 266776 5688999998888778899999998775
Q ss_pred EEEEeeccCCCCccc-----------------------------ccccccccceEEEccCCCh-----------hhHHHH
Q 001164 633 RVKFMDVGLGTKGVI-----------------------------NGVAVGSCFHVYVGNIPNQ-----------WAKDEI 672 (1134)
Q Consensus 633 RI~f~r~~lGa~G~~-----------------------------~Gva~~~s~~LwVG~iss~-----------~~keei 672 (1134)
||+.++-++.-...+ ++......+.|-+-++=.. -.+|+|
T Consensus 214 rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl 293 (382)
T KOG1548|consen 214 RVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDL 293 (382)
T ss_pred EEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHH
Confidence 555443332111111 1122234667777777553 234566
Q ss_pred HHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHH
Q 001164 673 LHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 673 lhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~I 713 (1134)
..|..++|....+-+-+---.+.+.+.|.+.+||......|
T Consensus 294 ~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m 334 (382)
T KOG1548|consen 294 TEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTM 334 (382)
T ss_pred HHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHh
Confidence 66677666666554444455778889999999999887766
No 112
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=94.13 E-value=0.07 Score=64.01 Aligned_cols=64 Identities=9% Similarity=0.252 Sum_probs=54.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe---c---cCceEEEEecCHHHHHHHHHhhccCcc
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---P---IKGFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~---~---~rgfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
+-++||||..|+.-+.-.||..+|++||++....++ + .|-|.||..-.-+||-.-++-|+-..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL 472 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL 472 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh
Confidence 347999999999999999999999999999977764 2 567999999999999887776655444
No 113
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=94.02 E-value=0.11 Score=62.62 Aligned_cols=149 Identities=19% Similarity=0.223 Sum_probs=101.8
Q ss_pred ccccccCceEEeccCCCccCHHHHHHHhhcc-----------C-CcceEEEeccCceEEEEecCHHHHHHHHHhhcc---
Q 001164 564 MDIFSASKQLWLGSFGPEASEAHIRFQIDRF-----------G-PLEHFFFFPIKGFALVEYINIIDAIRAREYIRN--- 628 (1134)
Q Consensus 564 ~dv~~~s~~LWVGnL~~~vte~dL~~~F~~y-----------G-pLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G--- 628 (1134)
++.--..+++|||++.+.++|+..+..|..= | ++.+|.+-..++|||+||+.+.+|-+|+ .++|
T Consensus 169 ~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~-~~~~~~f 247 (500)
T KOG0120|consen 169 SQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAM-ALDGIIF 247 (500)
T ss_pred cchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhh-cccchhh
Confidence 4455567899999999999999999988764 2 3667777779999999999999998884 4455
Q ss_pred --CcceEEEEeecc-----------CCCCccccccccc--ccceEEEccCCChhhHHHHHHHHhhccccCCce-eEec--
Q 001164 629 --HFSWRVKFMDVG-----------LGTKGVINGVAVG--SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYM-VTDL-- 690 (1134)
Q Consensus 629 --~~~~RI~f~r~~-----------lGa~G~~~Gva~~--~s~~LwVG~iss~~~keeilhELykfglk~p~~-ftfl-- 690 (1134)
..++-++=-+-+ +|+-+..-+-.++ ..+.++||+++....++++.+-+..|+....+. +.+.
T Consensus 248 ~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~ 327 (500)
T KOG0120|consen 248 EGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSAT 327 (500)
T ss_pred CCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccc
Confidence 433311111111 1222222222222 477899999999999999988887776555552 2333
Q ss_pred -CCCceeeEeecCHHHHHHHHHHH
Q 001164 691 -SCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 691 -sde~~a~LEFeSeEEAa~ak~~I 713 (1134)
-+...++.||...-....+.++|
T Consensus 328 g~skg~af~ey~dpsvtd~A~agL 351 (500)
T KOG0120|consen 328 GNSKGFAFCEYCDPSVTDQAIAGL 351 (500)
T ss_pred ccccceeeeeeeCCcchhhhhccc
Confidence 23667888888877666666655
No 114
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=93.93 E-value=0.11 Score=60.91 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=58.4
Q ss_pred cCCcccccccccCceEEeccCCCccCHHHHHHHhh-ccCCcceEEEe-----ccCceEEEEecCHHHHHHHHHhhccCcc
Q 001164 558 DEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQID-RFGPLEHFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 558 ~g~~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~-~yGpLe~v~~~-----~~rgfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
+|.++|+| |.+||-||+-++.=.||.++|. +-|.|+-|-++ .+||+|.|||++.+-+..|.+-|+-..+
T Consensus 37 ~gn~~~r~-----R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~ 111 (608)
T KOG4212|consen 37 GGNVAARD-----RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEV 111 (608)
T ss_pred CCCccccc-----ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccc
Confidence 56666766 6699999999999999999995 67888877654 3899999999999999999998876654
No 115
>smart00362 RRM_2 RNA recognition motif.
Probab=93.75 E-value=0.17 Score=41.74 Aligned_cols=56 Identities=23% Similarity=0.327 Sum_probs=43.1
Q ss_pred eEEEccCCChhhHHHHHHHHhhccccCCceeEecCC----CceeeEeecCHHHHHHHHHHHH
Q 001164 657 HVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSC----EGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 657 ~LwVG~iss~~~keeilhELykfglk~p~~ftflsd----e~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.|||++++..++.++|.+-|..+|-... +....+ ...++++|.+.++|..+...++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~--~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~ 60 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIES--VKIPKDTGKSKGFAFVEFESEEDAEKAIEALN 60 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEE--EEEecCCCCCCceEEEEeCCHHHHHHHHHHhC
Confidence 3899999999999999999988763333 223333 4789999999999999876553
No 116
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=93.39 E-value=0.051 Score=63.64 Aligned_cols=65 Identities=23% Similarity=0.326 Sum_probs=59.2
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc-------------------CceEEEEecCHHHHHHHHHhhccC
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-------------------KGFALVEYINIIDAIRAREYIRNH 629 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~-------------------rgfAFVeFr~i~DAi~A~~~L~G~ 629 (1134)
+++.|-+=||+-|-.-+.|+.+|+.+|-|.+|++-.+ +-+|||||+..+-|++|++-|...
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6899999999999999999999999999999999655 568999999999999999999777
Q ss_pred cceE
Q 001164 630 FSWR 633 (1134)
Q Consensus 630 ~~~R 633 (1134)
..||
T Consensus 310 ~~wr 313 (484)
T KOG1855|consen 310 QNWR 313 (484)
T ss_pred hhhh
Confidence 7773
No 117
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=93.23 E-value=0.25 Score=40.94 Aligned_cols=58 Identities=21% Similarity=0.327 Sum_probs=43.8
Q ss_pred eEEEccCCChhhHHHHHHHHhhccccCCceeEecC---CCceeeEeecCHHHHHHHHHHHH
Q 001164 657 HVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS---CEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 657 ~LwVG~iss~~~keeilhELykfglk~p~~ftfls---de~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.|+|++++...+.+++...|..++-...+.+.... ....++++|.+.++|..++..++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~ 61 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALN 61 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 37899999999999999999886533332222221 26789999999999999987664
No 118
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=93.09 E-value=0.19 Score=48.96 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=39.9
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccC
Q 001164 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNH 629 (1134)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~ 629 (1134)
+-|.+-+++.+++.++|.+.|..||+|.-|-|.+.-.-|||-|.+.++|..|++.+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 34667779999999999999999999999999999999999999999998888887653
No 119
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=93.00 E-value=0.2 Score=57.59 Aligned_cols=47 Identities=13% Similarity=0.302 Sum_probs=43.8
Q ss_pred HHHHHHHhhccCCcceEEEe--ccCceEEEEecCHHHHHHHHHhhccCc
Q 001164 584 EAHIRFQIDRFGPLEHFFFF--PIKGFALVEYINIIDAIRAREYIRNHF 630 (1134)
Q Consensus 584 e~dL~~~F~~yGpLe~v~~~--~~rgfAFVeFr~i~DAi~A~~~L~G~~ 630 (1134)
++||++.=++||++++|.+| .+.|-|-|-|++.++|..+++.|+|+.
T Consensus 290 kedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred HHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 67788889999999999999 599999999999999999999999983
No 120
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=92.99 E-value=1.4 Score=51.50 Aligned_cols=147 Identities=16% Similarity=0.109 Sum_probs=102.2
Q ss_pred CceEEeccCCCc-cCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhccCcce--EEEEeecc-----
Q 001164 570 SKQLWLGSFGPE-ASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVG----- 640 (1134)
Q Consensus 570 s~~LWVGnL~~~-vte~dL~~~F~~yGpLe~v~~~~-~rgfAFVeFr~i~DAi~A~~~L~G~~~~--RI~f~r~~----- 640 (1134)
++-+-|-.|-.+ ..-+.|.-+|=.||.|+.|.|.+ -.|.|.||-.|...-.+|+.-|+|..+. ++.|.-+.
T Consensus 287 g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~ 366 (494)
T KOG1456|consen 287 GCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVS 366 (494)
T ss_pred CcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccc
Confidence 455666666665 34466888999999999999987 7799999999999999999999999886 66665221
Q ss_pred -----------------CCCC---ccccccccc-----ccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCC---
Q 001164 641 -----------------LGTK---GVINGVAVG-----SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSC--- 692 (1134)
Q Consensus 641 -----------------lGa~---G~~~Gva~~-----~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsd--- 692 (1134)
.|+| =+.-+-|++ +|+.|--=+.+-..++|+++.-+-.-..+ +..++.+..
T Consensus 367 ~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~-~~svkvFp~kse 445 (494)
T KOG1456|consen 367 PVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVP-PTSVKVFPLKSE 445 (494)
T ss_pred cCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCC-cceEEeeccccc
Confidence 0110 001122333 78999888999988888776555433333 444433322
Q ss_pred Ccee-eEeecCHHHHHHHHHHHHHHh
Q 001164 693 EGAL-LMEFRTPEEATTAMAHLRQHR 717 (1134)
Q Consensus 693 e~~a-~LEFeSeEEAa~ak~~IRQ~r 717 (1134)
+... ++||++.++|..++..++++-
T Consensus 446 rSssGllEfe~~s~Aveal~~~NH~p 471 (494)
T KOG1456|consen 446 RSSSGLLEFENKSDAVEALMKLNHYP 471 (494)
T ss_pred ccccceeeeehHHHHHHHHHHhcccc
Confidence 3333 499999999999998886543
No 121
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.83 E-value=0.4 Score=58.63 Aligned_cols=140 Identities=24% Similarity=0.400 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHhccCCchHHHHHHhhccccccccCchhHhhhhhheeeeccccceee
Q 001164 55 IRSVYECYRRLKACIAQKDARRLPELEQAYLSLITASRGCTSVQRIVADLVPRYALYCPTALEAATEVVIYMHNSSVALI 134 (1134)
Q Consensus 55 ~~~~~~~y~~~~~~~~~~~~~~~~~le~~y~~li~~s~gc~svqri~a~~iprya~~cptal~aa~~v~i~m~~~~~~~~ 134 (1134)
|..+|+.|.+|-.- +|- .+=+.+|..+|.++-|=..++|+.|-+||||..+=|+--|.|.-+.+|.-
T Consensus 2 ie~lY~~~~~L~~a---~d~---~~~~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLc------- 68 (556)
T PF05918_consen 2 IEKLYENYEILADA---KDK---SQHEEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLC------- 68 (556)
T ss_dssp HHHHHHHHHHHHHT---GGG---GGGHHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHH-------
T ss_pred HHHHHHHHhHhhcC---CCc---ccCHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH-------
Confidence 67899999999872 332 45567999999999999999999999999999999999999998887753
Q ss_pred ccCCCCcchhhhhhhhhhccccccccccccCCCCccccccchhhhhhhhhhhhhhccCCCceEeechhhhhccCCchHHH
Q 001164 135 NRGEDADGVAFQTASACIFGLGDICRTASSEVPTSSVIRGICSAVFHNVLDFFISSFDGKDIIHTVDKEITKMLDSDEVF 214 (1134)
Q Consensus 135 ~rg~d~~gva~~ta~aci~gl~dic~~a~~~~~~s~~~~~ics~v~~~vl~ff~~~~~g~di~~~~~~~~~~~~d~~e~~ 214 (1134)
-+||. +.=+.-|-||.+||-.. ++++ ..+-
T Consensus 69 -EDed~-----~iR~~aik~lp~~ck~~---------------------------------------~~~v-----~kva 98 (556)
T PF05918_consen 69 -EDEDV-----QIRKQAIKGLPQLCKDN---------------------------------------PEHV-----SKVA 98 (556)
T ss_dssp -T-SSH-----HHHHHHHHHGGGG--T-----------------------------------------T-H-----HHHH
T ss_pred -hcccH-----HHHHHHHHhHHHHHHhH---------------------------------------HHHH-----hHHH
Confidence 23442 23455688899999652 1111 2456
Q ss_pred HhhhcccCCCchhhhhhhHHHHHhHHHHHHhcCchHHHHHHHHhhCc
Q 001164 215 LGLKKKFSDEDESSLIKLSKFRLLSLLQIFFSSPKNLLAACFELFNP 261 (1134)
Q Consensus 215 ~~lk~~~~~~~~~~~~~l~~~~~l~~l~~f~~~p~~~l~acf~l~~~ 261 (1134)
++|-|-+.-|+..-++-. --+|+.+|-..||..|.+=|.-+.+
T Consensus 99 DvL~QlL~tdd~~E~~~v----~~sL~~ll~~d~k~tL~~lf~~i~~ 141 (556)
T PF05918_consen 99 DVLVQLLQTDDPVELDAV----KNSLMSLLKQDPKGTLTGLFSQIES 141 (556)
T ss_dssp HHHHHHTT---HHHHHHH----HHHHHHHHHH-HHHHHHHHHHHHH-
T ss_pred HHHHHHHhcccHHHHHHH----HHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 666666654444333322 2477888889999999999998874
No 122
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=92.76 E-value=0.073 Score=57.99 Aligned_cols=61 Identities=20% Similarity=0.132 Sum_probs=52.8
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
.+.|.|=++...+...||...|.+||.+..... .++||||+|..-+||..|.+.|+|..+.
T Consensus 99 ~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~~~~~ 159 (216)
T KOG0106|consen 99 HFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRALEKLDGKKLN 159 (216)
T ss_pred cceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcchhccchhhc
Confidence 356777888888999999999999999954444 7899999999999999999999998653
No 123
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.24 E-value=0.093 Score=65.50 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=71.1
Q ss_pred ccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce------EEEEe
Q 001164 564 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFM 637 (1134)
Q Consensus 564 ~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~------RI~f~ 637 (1134)
.|||..--+.++-|..-+.+-.-|..+|..||.+-+.|..|+-+-|.|+|..++-|+-|.++|+|+.+. ||-|+
T Consensus 292 snv~plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 292 SNVFPLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cccccCcchhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 488999999999999999999999999999999999999999999999999999999999999999875 88888
Q ss_pred ec
Q 001164 638 DV 639 (1134)
Q Consensus 638 r~ 639 (1134)
+.
T Consensus 372 k~ 373 (1007)
T KOG4574|consen 372 KT 373 (1007)
T ss_pred cc
Confidence 53
No 124
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=92.07 E-value=0.15 Score=61.58 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=54.5
Q ss_pred cceeeeecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHh
Q 001164 551 SQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREY 625 (1134)
Q Consensus 551 ~~~~~~~~g~~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-----~rgfAFVeFr~i~DAi~A~~~ 625 (1134)
.+.|-.+||.|. ||.-.-+.-+.-|..+|++||++.++.+=. -+||+|+||.+.++|..|++.
T Consensus 57 ~D~vVvv~g~Pv------------V~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~ 124 (698)
T KOG2314|consen 57 FDSVVVVDGAPV------------VGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKS 124 (698)
T ss_pred cceEEEECCCcc------------cChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHh
Confidence 445666788774 233333344667888999999999998742 579999999999999999999
Q ss_pred hccCcce
Q 001164 626 IRNHFSW 632 (1134)
Q Consensus 626 L~G~~~~ 632 (1134)
|+|+.+-
T Consensus 125 l~G~~ld 131 (698)
T KOG2314|consen 125 LNGKRLD 131 (698)
T ss_pred cccceec
Confidence 9999764
No 125
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=92.00 E-value=0.14 Score=49.81 Aligned_cols=42 Identities=19% Similarity=0.133 Sum_probs=34.8
Q ss_pred HHHhh---ccccCCceeEecCCCceeeEeecCHHHHHHHHHHHHH
Q 001164 674 HESYK---VVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 674 hELyk---fglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
+|+|+ +....+.+++|..++|..+|+|++++||..|...|++
T Consensus 60 ~ely~~~~y~~~~~~Fh~f~~~~~~~GLnF~se~EA~~F~~~v~~ 104 (106)
T smart00461 60 QELYKNFKYNQATPTFHQWADDKCVYGLNFASEEEAKKFRKKVLK 104 (106)
T ss_pred EeccCCCEEeecCCceEEEEeCCeEEEeecCCHHHHHHHHHHHHh
Confidence 45555 3456677889999999999999999999999998854
No 126
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.76 E-value=0.051 Score=67.74 Aligned_cols=131 Identities=16% Similarity=0.210 Sum_probs=94.8
Q ss_pred cCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhccCcc
Q 001164 558 DEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 558 ~g~~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~------~~rgfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
|--...-|.+.-.++.+|-||.+...+.||...|..||-++.|.+. +.||+|||+|....+|-+|+.-.++++.
T Consensus 655 ~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 655 ENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred hccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh
Confidence 3334444555556789999999999999999999999999988774 5889999999999999999998888754
Q ss_pred eEEEEeeccCCCCcccccccccccceEEEccCCChhhHHHHHHHHhhccccCCceeEecC---CCceeeEeecCHHHHHH
Q 001164 632 WRVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS---CEGALLMEFRTPEEATT 708 (1134)
Q Consensus 632 ~RI~f~r~~lGa~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfls---de~~a~LEFeSeEEAa~ 708 (1134)
+. ..|.|-+.+.+=++|++.-=..++|-.-.+..+... -...+.++|.++.+|.+
T Consensus 735 gK----------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~ 792 (881)
T KOG0128|consen 735 GK----------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASR 792 (881)
T ss_pred hh----------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhh
Confidence 32 234577777777777766555554422222222222 24567888999877766
Q ss_pred HH
Q 001164 709 AM 710 (1134)
Q Consensus 709 ak 710 (1134)
..
T Consensus 793 ~~ 794 (881)
T KOG0128|consen 793 KV 794 (881)
T ss_pred hc
Confidence 43
No 127
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=91.75 E-value=0.29 Score=57.70 Aligned_cols=70 Identities=14% Similarity=0.010 Sum_probs=59.0
Q ss_pred cccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEE-eccCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 563 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF-FPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 563 a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~-~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
|.-+....|+++|-||+-+-|=.-|++.|..||.+.-..+ .+.+.-..|-|...+||+.|+..|+|.++-
T Consensus 529 a~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~ 599 (608)
T KOG4212|consen 529 AVGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLD 599 (608)
T ss_pred cccccccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCccc
Confidence 3444556899999999999999999999999999987665 344444489999999999999999998764
No 128
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=91.72 E-value=0.11 Score=60.73 Aligned_cols=132 Identities=15% Similarity=0.213 Sum_probs=86.7
Q ss_pred ceEEeccCCCccCHHHHHHHhhcc--CCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce---EEEEeeccCCCCc
Q 001164 571 KQLWLGSFGPEASEAHIRFQIDRF--GPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW---RVKFMDVGLGTKG 645 (1134)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~y--GpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~---RI~f~r~~lGa~G 645 (1134)
++||+|||++.++.+||+.+|+-- |-=-.|.+.. |||||.+-+-.-|..|.+.+.|+.-. |++.-.. + .+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~--gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s-v-~k- 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS--GYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS-V-PK- 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec--ceeeccCCchhhhhhhHHhhchhhhhcCceeeccch-h-hH-
Confidence 579999999999999999999754 2223455544 99999999999999999999887432 3332211 0 00
Q ss_pred ccccccccccceEEEccCCChhhHHHHHHHHhh-ccccCCceeEecCC-CceeeEeecCHHHHHHHHHHHH
Q 001164 646 VINGVAVGSCFHVYVGNIPNQWAKDEILHESYK-VVYKGPYMVTDLSC-EGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 646 ~~~Gva~~~s~~LwVG~iss~~~keeilhELyk-fglk~p~~ftflsd-e~~a~LEFeSeEEAa~ak~~IR 714 (1134)
---||.+-|-+|+.+.. .|+++-|.. .+...-+..+-... .-.+.+.|.+.+++..++.++.
T Consensus 77 ------kqrsrk~Qirnippql~-wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~ 140 (584)
T KOG2193|consen 77 ------KQRSRKIQIRNIPPQLQ-WEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLN 140 (584)
T ss_pred ------HHHhhhhhHhcCCHHHH-HHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 01478888999998753 467777765 44444443322222 2233356666777766666663
No 129
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=91.43 E-value=0.36 Score=41.71 Aligned_cols=48 Identities=17% Similarity=0.332 Sum_probs=38.5
Q ss_pred eccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHH
Q 001164 575 LGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAR 623 (1134)
Q Consensus 575 VGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~ 623 (1134)
|-...++-. +++...|..||.|.++.+-...++++|.|++-.||..|+
T Consensus 6 V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 6 VSGFPPDLA-EEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEeECchHH-HHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 444444444 456668999999999998778999999999999999884
No 130
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=91.43 E-value=0.86 Score=53.61 Aligned_cols=10 Identities=10% Similarity=0.537 Sum_probs=6.5
Q ss_pred CchhhhhHHH
Q 001164 1064 DHKGFQDFVS 1073 (1134)
Q Consensus 1064 D~k~fqdFi~ 1073 (1134)
.++.|+.||.
T Consensus 472 kDDaY~~FMk 481 (487)
T KOG4672|consen 472 KDDAYNAFMK 481 (487)
T ss_pred chHHHHHHHH
Confidence 4466777874
No 131
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=91.37 E-value=0.25 Score=66.28 Aligned_cols=7 Identities=14% Similarity=0.302 Sum_probs=2.9
Q ss_pred eEEEccC
Q 001164 657 HVYVGNI 663 (1134)
Q Consensus 657 ~LwVG~i 663 (1134)
.|-|-++
T Consensus 1349 ~l~i~~~ 1355 (2039)
T PRK15319 1349 DLVVSDA 1355 (2039)
T ss_pred ceeeccc
Confidence 3444443
No 132
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=90.89 E-value=0.14 Score=62.10 Aligned_cols=62 Identities=23% Similarity=0.323 Sum_probs=57.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhc-cCCcceEEEeccCceEEEEecCHHHHHHHHHhhccC
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDR-FGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNH 629 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~-yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~ 629 (1134)
.+|+-|+|-||-.--|...|++++++ -|-|+.+||...++-+||-|-..+||++-+.+|+|-
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV 504 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNV 504 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhcc
Confidence 45889999999999999999999995 556779999999999999999999999999999995
No 133
>smart00360 RRM RNA recognition motif.
Probab=90.38 E-value=0.6 Score=38.15 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=40.8
Q ss_pred EccCCChhhHHHHHHHHhhccccCCceeEecC----CCceeeEeecCHHHHHHHHHHHH
Q 001164 660 VGNIPNQWAKDEILHESYKVVYKGPYMVTDLS----CEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 660 VG~iss~~~keeilhELykfglk~p~~ftfls----de~~a~LEFeSeEEAa~ak~~IR 714 (1134)
|++++..++.++|.+-|..+|-...+.+.... ....++++|.+.++|..++..+.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~ 59 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALN 59 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcC
Confidence 57899999999999999887744443332211 24689999999999999977654
No 134
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=90.29 E-value=0.52 Score=47.90 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=50.3
Q ss_pred cceEEEccCCChhhHHHHHHHHhhccccCCcee-E---ecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T---DLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 655 s~~LwVG~iss~~~keeilhELykfglk~p~~f-t---flsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+.||||+++..+++++|...|..+|....+.+ . .-..++.++++|.+.++|..+...+.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~ 178 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELN 178 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcC
Confidence 499999999999999999999999876644433 2 23568999999999999999988885
No 135
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=89.99 E-value=0.46 Score=53.87 Aligned_cols=51 Identities=18% Similarity=0.315 Sum_probs=43.1
Q ss_pred cCHHHHHHHhhccCCcceEEEeccCce-------EEEEecCHHHHHHHHHhhccCcce
Q 001164 582 ASEAHIRFQIDRFGPLEHFFFFPIKGF-------ALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 582 vte~dL~~~F~~yGpLe~v~~~~~rgf-------AFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
--|+++.++-++||.+.+|.+|-..+| -||+|++.+.||.|+=.|+|+.++
T Consensus 298 elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG 355 (378)
T KOG1996|consen 298 ELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG 355 (378)
T ss_pred HHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec
Confidence 345677788999999999999865554 699999999999999999998554
No 136
>PLN03120 nucleic acid binding protein; Provisional
Probab=89.45 E-value=0.68 Score=51.95 Aligned_cols=57 Identities=16% Similarity=0.033 Sum_probs=46.6
Q ss_pred cceEEEccCCChhhHHHHHHHHhhccccCCceeEec-CCCceeeEeecCHHHHHHHHH
Q 001164 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL-SCEGALLMEFRTPEEATTAMA 711 (1134)
Q Consensus 655 s~~LwVG~iss~~~keeilhELykfglk~p~~ftfl-sde~~a~LEFeSeEEAa~ak~ 711 (1134)
.+.||||||+...++++|...|..+|.+..+.+..- ......+++|.+.++|..++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All 61 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL 61 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH
Confidence 578999999999999999999988886666555332 246789999999999988884
No 137
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=89.26 E-value=0.54 Score=48.11 Aligned_cols=65 Identities=18% Similarity=0.206 Sum_probs=45.2
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCcee---EecCCC-ceeeEeecCHHHHHHHHHHHHHHh
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV---TDLSCE-GALLMEFRTPEEATTAMAHLRQHR 717 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~f---tflsde-~~a~LEFeSeEEAa~ak~~IRQ~r 717 (1134)
..|+.|||||+|=.+.+|+|-.=|.+-|-++.+.+ ++.-.- ..-+++|.+.+||..|+++|.-.|
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgtr 102 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTR 102 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCc
Confidence 46999999999999888888666655553333322 111112 345689999999999999995443
No 138
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=89.15 E-value=0.32 Score=47.02 Aligned_cols=42 Identities=19% Similarity=0.198 Sum_probs=34.1
Q ss_pred HHHhh---ccccCCceeEecCCCceeeEeecCHHHHHHHHHHHHH
Q 001164 674 HESYK---VVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 674 hELyk---fglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
+|+|+ +..-.+.+++|..+++.++|+|.+++||..+...+.+
T Consensus 58 ~~l~~~~~y~~~~~~Fh~w~~~~~~~GL~F~se~eA~~F~~~v~~ 102 (104)
T cd00837 58 QEIYKGLKYTQATPFFHQWEDDNCVYGLNFASEEEAAQFRKKVLE 102 (104)
T ss_pred EEecCCcEEeecCCeEEEEEcCCcEEEEeeCCHHHHHHHHHHHHh
Confidence 44444 2345677889999999999999999999999988854
No 139
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=88.75 E-value=1.6 Score=51.39 Aligned_cols=10 Identities=30% Similarity=0.541 Sum_probs=5.5
Q ss_pred HHhhccccCC
Q 001164 715 QHRKSRSNYL 724 (1134)
Q Consensus 715 Q~rRerSq~k 724 (1134)
|.|-+.|||.
T Consensus 117 ~kr~~~sqYy 126 (487)
T KOG4672|consen 117 DKRPEDSQYY 126 (487)
T ss_pred hhchhhhhhh
Confidence 3344567765
No 140
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=88.58 E-value=0.38 Score=51.65 Aligned_cols=60 Identities=23% Similarity=0.293 Sum_probs=48.6
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhccccCCceeEecC-CCceeeEeecCHHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS-CEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfls-de~~a~LEFeSeEEAa~ak~~I 713 (1134)
.++.|||||++..+-+.||+.-|||++.+..+.++--. .-+.++++|+..-||..|...-
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygR 65 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGR 65 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcc
Confidence 58999999999999999999999998866665554333 3788999999998888775443
No 141
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=87.93 E-value=0.28 Score=48.67 Aligned_cols=37 Identities=14% Similarity=0.064 Sum_probs=32.0
Q ss_pred ccccCCceeEecCCCceeeEeecCHHHHHHHHHHHHH
Q 001164 679 VVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 679 fglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
+..-.|.++++..+++..+|||.+++||..|...|++
T Consensus 69 y~k~~p~Fh~w~~~~~v~GLnF~Se~eA~~F~~~v~~ 105 (111)
T cd01207 69 YNQATPTFHQWRDARQVYGLNFGSKEDATMFASAMLS 105 (111)
T ss_pred eeecCCcceeeecCCeEEeeccCCHHHHHHHHHHHHH
Confidence 3456666889999999999999999999999998865
No 142
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=87.18 E-value=0.93 Score=47.16 Aligned_cols=55 Identities=16% Similarity=0.252 Sum_probs=43.1
Q ss_pred cCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 577 SFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 577 nL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
|+.+.-.-..+-..++.||+|++|+.. .|--|.|.|+|+.-|-.|+.+.+-+..+
T Consensus 97 nm~~~edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s~~pg 151 (166)
T PF15023_consen 97 NMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSAFQSRAPG 151 (166)
T ss_pred cCChHHHHHHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHhhcCCCCC
Confidence 333333334566678999999999874 6789999999999999999999987654
No 143
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=87.08 E-value=0.39 Score=53.59 Aligned_cols=62 Identities=19% Similarity=0.324 Sum_probs=53.8
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCce------------------EEEEecCHHHHHHHHHhhccCc
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGF------------------ALVEYINIIDAIRAREYIRNHF 630 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgf------------------AFVeFr~i~DAi~A~~~L~G~~ 630 (1134)
.+.-+|+++|+|...-..|+++|+.||.|..|.+.+..-+ ..|||.+-+.|..-.+.|+|+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4567999999999999999999999999999999874332 5689999999988888999984
No 144
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=86.77 E-value=6.6 Score=45.82 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=40.8
Q ss_pred EEeccCCCccCHHHHHHHhhccCC--cceEEEec------cCceEEEEecCHHHHHHHHHhhccC
Q 001164 573 LWLGSFGPEASEAHIRFQIDRFGP--LEHFFFFP------IKGFALVEYINIIDAIRAREYIRNH 629 (1134)
Q Consensus 573 LWVGnL~~~vte~dL~~~F~~yGp--Le~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~ 629 (1134)
+|||||---.|++||.+....-|- +-.++||- +||||+|-...-+...+-++.|.-+
T Consensus 83 ~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k 147 (498)
T KOG4849|consen 83 CYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTK 147 (498)
T ss_pred EEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccc
Confidence 799999999999999998877773 33555552 6788888766655445556555554
No 145
>PF15449 Retinal: Retinal protein
Probab=86.59 E-value=12 Score=49.07 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=18.8
Q ss_pred HHHHHHhhCccccccccccceeeecceeec
Q 001164 252 LAACFELFNPSVLEGIHKGQYFFSQITSRF 281 (1134)
Q Consensus 252 l~acf~l~~~~~~e~~~~~~~~~~q~t~~~ 281 (1134)
|.-|||-+|----|-.+.|--+|.-+..+|
T Consensus 228 l~l~feEinqll~ei~~dGe~ll~ev~~~l 257 (1287)
T PF15449_consen 228 LLLRFEEINQLLGEIAKDGEVLLKEVGGDL 257 (1287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 557888777665455555777766655443
No 146
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=84.33 E-value=1.9 Score=46.15 Aligned_cols=58 Identities=19% Similarity=0.093 Sum_probs=43.8
Q ss_pred cCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhc--cCcce----EEEEeec
Q 001164 582 ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIR--NHFSW----RVKFMDV 639 (1134)
Q Consensus 582 vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~--G~~~~----RI~f~r~ 639 (1134)
...+.|+++|..|+++-+|...+.=+=..|.|.+.++|++|+..|+ |..+. |+.|++.
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 4568999999999999999999988889999999999999999999 66443 6666643
No 147
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=82.46 E-value=0.72 Score=52.20 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=57.6
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEeec
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~ 639 (1134)
..-+.||++.-++++++|...|..+|.|.++.+-. .+|||||.|.+..++..|+.. ++..+. ++++.+.
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEP 263 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCC
Confidence 33444999999999999999999999999999842 679999999999999988887 776654 5666643
No 148
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=82.20 E-value=2.3 Score=42.40 Aligned_cols=60 Identities=17% Similarity=0.172 Sum_probs=47.9
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhccccCCcee-EecCCCceeeEeecCHHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tflsde~~a~LEFeSeEEAa~ak~~I 713 (1134)
-++.|||-++|-.++.||+..-|=++|-++-+.+ -.-..+..+++-|+...||..|..+|
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhl 77 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHL 77 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHh
Confidence 4889999999999999998877666554444444 33345788999999999999999888
No 149
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=81.84 E-value=2.3 Score=41.51 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=31.9
Q ss_pred cccCCceeEecCCCceeeEeecCHHHHHHHHHHHHH
Q 001164 680 VYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 680 glk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
....+.+++|..+++..+|+|++++||..|...+.+
T Consensus 74 ~~~~~~Fh~f~~~~~~~GLnF~se~eA~~F~~~v~~ 109 (111)
T PF00568_consen 74 TKARPFFHQFEDDDCVYGLNFASEEEADQFYKKVQE 109 (111)
T ss_dssp EEESSSEEEEEETTCEEEEEESSHHHHHHHHHHHHH
T ss_pred EeCCCcEEEEEeCCeEEEEecCCHHHHHHHHHHHhc
Confidence 355677889999999999999999999999998865
No 150
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=81.41 E-value=28 Score=42.60 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=12.1
Q ss_pred eeeEeecCHHHHHHHHHHHHHHh
Q 001164 695 ALLMEFRTPEEATTAMAHLRQHR 717 (1134)
Q Consensus 695 ~a~LEFeSeEEAa~ak~~IRQ~r 717 (1134)
..+|.-+|+|...+|-+.|+++-
T Consensus 206 H~~Isadt~eki~~Ai~vienli 228 (554)
T KOG0119|consen 206 HCLISADTQEKIKKAIAVIENLI 228 (554)
T ss_pred eEEEecchHHHHHHHHHHHHHHH
Confidence 34455566665555555554433
No 151
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=81.03 E-value=2.4 Score=51.15 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=14.4
Q ss_pred CCCccccccCCccchhhhhcccccc
Q 001164 1022 PAEWPAKLDMTKRTDFRHVKSTFTS 1046 (1134)
Q Consensus 1022 PtvWPs~lD~T~RtDfd~LEslFs~ 1046 (1134)
.+-|...+... .|-..++++|..
T Consensus 307 ~t~W~s~D~~~--~D~~r~~~LFEs 329 (817)
T KOG1925|consen 307 ATLWASLDPVS--VDTARLEHLFES 329 (817)
T ss_pred chhhhccCcce--ecHHHHHHHHHH
Confidence 34565544333 666678888886
No 152
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=80.37 E-value=10 Score=48.57 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=17.9
Q ss_pred CCCCccccccCCccchh---hhhcccccc
Q 001164 1021 EPAEWPAKLDMTKRTDF---RHVKSTFTS 1046 (1134)
Q Consensus 1021 EPtvWPs~lD~T~RtDf---d~LEslFs~ 1046 (1134)
.-.+|....+...-.+. +.++++|..
T Consensus 410 ~~~~w~~~~~~~~~~~~~~~~~~e~lf~~ 438 (833)
T KOG1922|consen 410 RSMVWSEVDSSSSLFDPPLSELMEALFGL 438 (833)
T ss_pred cCCCCCccccCCcCCCCCcccccccchhh
Confidence 35677777777666666 777777765
No 153
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=80.35 E-value=2.3 Score=51.04 Aligned_cols=59 Identities=25% Similarity=0.263 Sum_probs=49.5
Q ss_pred ceEEEccCCChhhHHHHHHHHhhccccCCceeEec----CCCceeeEeecCHHHHHHHHHHHH
Q 001164 656 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 656 ~~LwVG~iss~~~keeilhELykfglk~p~~ftfl----sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
+.+|||+|+-.|++|+|...+...|..-.+.+.+- ..+..++++|.++++|.++..+++
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lN 81 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLN 81 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcC
Confidence 89999999999999999999998776655544222 237899999999999999999985
No 154
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=78.61 E-value=2.1 Score=50.29 Aligned_cols=66 Identities=12% Similarity=0.309 Sum_probs=52.4
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEec-c--------CceEEEEecCHHHHHHHHHhhccCcceEEEEe
Q 001164 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-I--------KGFALVEYINIIDAIRAREYIRNHFSWRVKFM 637 (1134)
Q Consensus 572 ~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-~--------rgfAFVeFr~i~DAi~A~~~L~G~~~~RI~f~ 637 (1134)
-|-|.||.|.+|.+++.-+|+..|.|+.+.+|+ . .-.|||-|.|..-+..|-..-+-.++.|+-|-
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv 83 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIV 83 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEE
Confidence 467899999999999999999999999999998 2 25899999999998877444444334344433
No 155
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.00 E-value=90 Score=40.83 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=13.3
Q ss_pred cceeeeeeccCcccccc
Q 001164 1000 YCTIYAQREESDICKYT 1016 (1134)
Q Consensus 1000 yC~~~c~~vdsdIC~~~ 1016 (1134)
-|++|+.+...|+|.++
T Consensus 291 r~T~Y~iP~T~Dl~~as 307 (1007)
T KOG1984|consen 291 RCTMYTIPCTNDLLKAS 307 (1007)
T ss_pred eeecccCCccHhHHHhc
Confidence 48888888888888763
No 156
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=76.99 E-value=55 Score=40.22 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=7.7
Q ss_pred cCHHHHHHHHHHHHH
Q 001164 701 RTPEEATTAMAHLRQ 715 (1134)
Q Consensus 701 eSeEEAa~ak~~IRQ 715 (1134)
++.+.|.....+|.+
T Consensus 215 eki~~Ai~vienli~ 229 (554)
T KOG0119|consen 215 EKIKKAIAVIENLIQ 229 (554)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555544
No 157
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=76.93 E-value=1.2 Score=49.80 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=38.6
Q ss_pred HHHHHHhh-ccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhccCc
Q 001164 585 AHIRFQID-RFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHF 630 (1134)
Q Consensus 585 ~dL~~~F~-~yGpLe~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~~ 630 (1134)
+||..+|+ +||.|+++.+-. -+|=+||.|+.-+||++|.++|+|..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw 134 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRW 134 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcc
Confidence 44555556 999999998754 56889999999999999999999983
No 158
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.65 E-value=1.2e+02 Score=40.50 Aligned_cols=11 Identities=9% Similarity=0.202 Sum_probs=5.3
Q ss_pred cceEEEccCCC
Q 001164 655 CFHVYVGNIPN 665 (1134)
Q Consensus 655 s~~LwVG~iss 665 (1134)
+++|-+|.+.+
T Consensus 495 s~alitgd~~~ 505 (1049)
T KOG0307|consen 495 SEALITGDFKS 505 (1049)
T ss_pred HHHHHhccHHH
Confidence 44445555444
No 159
>PRK15313 autotransport protein MisL; Provisional
Probab=76.36 E-value=4.3 Score=52.44 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=4.0
Q ss_pred hhcccCcccc
Q 001164 1097 MFILPYSQDI 1106 (1134)
Q Consensus 1097 L~lvPeS~e~ 1106 (1134)
.++=|..+++
T Consensus 822 w~LEPQAQLi 831 (955)
T PRK15313 822 YWLQPKAQVV 831 (955)
T ss_pred EEEeeEEEEE
Confidence 3344444433
No 160
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=74.74 E-value=5.3 Score=33.59 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=28.8
Q ss_pred HHHHhhccccCCceeEecCCC-ceeeEeecCHHHHHHHHHHHH
Q 001164 673 LHESYKVVYKGPYMVTDLSCE-GALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 673 lhELykfglk~p~~ftflsde-~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+.|.+||... .++..... +.++++|++.+||..++..++
T Consensus 2 ~~~f~~fG~V~--~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~ 42 (56)
T PF13893_consen 2 YKLFSKFGEVK--KIKIFKKKRGFAFVEFASVEDAQKAIEQLN 42 (56)
T ss_dssp HHHHTTTS-EE--EEEEETTSTTEEEEEESSHHHHHHHHHHHT
T ss_pred hHHhCCcccEE--EEEEEeCCCCEEEEEECCHHHHHHHHHHhC
Confidence 44555555333 35555555 999999999999999999884
No 161
>PHA03378 EBNA-3B; Provisional
Probab=74.55 E-value=81 Score=40.19 Aligned_cols=10 Identities=20% Similarity=0.896 Sum_probs=5.8
Q ss_pred ccccCCCCCC
Q 001164 817 SFQSNWSVSG 826 (1134)
Q Consensus 817 gf~s~~~~pG 826 (1134)
.|..+|...|
T Consensus 661 ~y~~~w~~~~ 670 (991)
T PHA03378 661 PYKPTWTQIG 670 (991)
T ss_pred ccCCcccccC
Confidence 4556666655
No 162
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=74.36 E-value=4.2 Score=43.13 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=45.1
Q ss_pred cCceEEeccCCCccCHHHHHHHhhc-cCCc---ceEEEec--------cCceEEEEecCHHHHHHHHHhhccCc
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDR-FGPL---EHFFFFP--------IKGFALVEYINIIDAIRAREYIRNHF 630 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~-yGpL---e~v~~~~--------~rgfAFVeFr~i~DAi~A~~~L~G~~ 630 (1134)
...+|-|-+|+|+.||+++.+.+.. +|.- ..|.... .-+-|||.|.+.+|...=++.++|+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~ 79 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHV 79 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcE
Confidence 3458999999999999999998887 7766 3333111 23779999999999999999999984
No 163
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=74.15 E-value=8.4 Score=48.33 Aligned_cols=76 Identities=17% Similarity=0.146 Sum_probs=62.1
Q ss_pred cccc-ccCc-eEEeccCCCccCHHHHHHHhhccCCcc-eEEEec-----cCceEEEEecCHHHHHHHHHhhccCcce-EE
Q 001164 564 MDIF-SASK-QLWLGSFGPEASEAHIRFQIDRFGPLE-HFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW-RV 634 (1134)
Q Consensus 564 ~dv~-~~s~-~LWVGnL~~~vte~dL~~~F~~yGpLe-~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~~~~-RI 634 (1134)
||.| ++.+ -|=+-|++-+|+=+||.+.|.-|=.+- +|.+.+ +-|=|.|.|++.++|.+|...|+|+.++ |+
T Consensus 859 ~~~~~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~ 938 (944)
T KOG4307|consen 859 MELIKSPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRV 938 (944)
T ss_pred HHhcCCCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCccccee
Confidence 4444 3344 788999999999999999999999887 566644 4488999999999999999999999887 66
Q ss_pred EEeec
Q 001164 635 KFMDV 639 (1134)
Q Consensus 635 ~f~r~ 639 (1134)
-++|+
T Consensus 939 V~l~i 943 (944)
T KOG4307|consen 939 VSLRI 943 (944)
T ss_pred EEEEe
Confidence 65654
No 164
>PLN03121 nucleic acid binding protein; Provisional
Probab=73.64 E-value=5.6 Score=44.54 Aligned_cols=55 Identities=9% Similarity=0.042 Sum_probs=44.4
Q ss_pred ceEEEccCCChhhHHHHHHHHhhccccCCcee-EecCCCceeeEeecCHHHHHHHH
Q 001164 656 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAM 710 (1134)
Q Consensus 656 ~~LwVG~iss~~~keeilhELykfglk~p~~f-tflsde~~a~LEFeSeEEAa~ak 710 (1134)
..|||+||+...++++|...|-.+|.+..+.+ .+-...+..+++|.++++|..++
T Consensus 6 ~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl 61 (243)
T PLN03121 6 YTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV 61 (243)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH
Confidence 57999999999999999988888887666644 33334568899999999887776
No 165
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.62 E-value=17 Score=45.07 Aligned_cols=19 Identities=53% Similarity=0.650 Sum_probs=9.0
Q ss_pred HHhccCC--chHHHHHHhhcc
Q 001164 87 LITASRG--CTSVQRIVADLV 105 (1134)
Q Consensus 87 li~~s~g--c~svqri~a~~i 105 (1134)
|++.-.| -|++=|++|..+
T Consensus 42 Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 42 LFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 4444443 355555555443
No 166
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.43 E-value=8.4 Score=46.41 Aligned_cols=14 Identities=43% Similarity=0.634 Sum_probs=6.5
Q ss_pred cCCcCCCCCCCCCc
Q 001164 382 EGSEVDSDEDDSDP 395 (1134)
Q Consensus 382 e~~~~~~~~~~s~~ 395 (1134)
|+-.+|.+.|+.++
T Consensus 82 e~~~~~~~~d~vd~ 95 (483)
T KOG2236|consen 82 EDGSVDQPDDLVDP 95 (483)
T ss_pred ccCcccccccccch
Confidence 34444454454444
No 167
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=71.37 E-value=48 Score=42.54 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=8.4
Q ss_pred CCCCCCCCCcceeeeec
Q 001164 542 LPVPYASTTSQIVWYFD 558 (1134)
Q Consensus 542 ~~~~~~~~~~~~~~~~~ 558 (1134)
+|.+.+.+.+++.=|.|
T Consensus 280 lpal~~~~~~~~a~~vD 296 (759)
T PF05518_consen 280 LPALASPAWSSVAAWVD 296 (759)
T ss_pred CccccccchhhHhhHhH
Confidence 45555555455444444
No 168
>PLN03213 repressor of silencing 3; Provisional
Probab=70.87 E-value=7.5 Score=47.11 Aligned_cols=60 Identities=10% Similarity=0.118 Sum_probs=47.9
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCH--HHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTP--EEATTAMAHL 713 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSe--EEAa~ak~~I 713 (1134)
....||||+++-.+..++|..-|..||....+.+.....+..+||+|.+. +++.++...|
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaL 70 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTY 70 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHh
Confidence 45789999999999999999999999877776554445599999999987 4566655544
No 169
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=70.84 E-value=4.1 Score=45.88 Aligned_cols=60 Identities=22% Similarity=0.277 Sum_probs=47.6
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe---c--cCceEEEEecCHHHHHHHHHhh
Q 001164 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---P--IKGFALVEYINIIDAIRAREYI 626 (1134)
Q Consensus 567 ~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~---~--~rgfAFVeFr~i~DAi~A~~~L 626 (1134)
|.....|||-||...|+.+.|+..|++||+|+.-.++ + .-+=.+|+|.+--.|..|.+..
T Consensus 28 fa~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 28 FAMHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred eeccceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHh
Confidence 3444789999999999999999999999999965543 2 3356799999999996555544
No 170
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=70.50 E-value=43 Score=44.96 Aligned_cols=20 Identities=5% Similarity=-0.258 Sum_probs=12.9
Q ss_pred echhhhhccCCchHHHHhhh
Q 001164 199 TVDKEITKMLDSDEVFLGLK 218 (1134)
Q Consensus 199 ~~~~~~~~~~d~~e~~~~lk 218 (1134)
+|.+-.++.+||..++..++
T Consensus 1085 ~gsr~pv~~ddpa~ltp~sg 1104 (1958)
T KOG0391|consen 1085 LGSRPPVGGDDPAPLTPQSG 1104 (1958)
T ss_pred hccCCCCCCCCccccccccC
Confidence 45666666777777766664
No 171
>PRK15313 autotransport protein MisL; Provisional
Probab=69.77 E-value=10 Score=49.25 Aligned_cols=7 Identities=29% Similarity=0.847 Sum_probs=2.9
Q ss_pred CceEEec
Q 001164 570 SKQLWLG 576 (1134)
Q Consensus 570 s~~LWVG 576 (1134)
+++++||
T Consensus 183 ~~~i~~g 189 (955)
T PRK15313 183 SANIYVG 189 (955)
T ss_pred cceEEEc
Confidence 3444444
No 172
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=68.95 E-value=9.2 Score=37.51 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=36.5
Q ss_pred CHHHHHHHhhccCCcceEE-------------EeccCceEEEEecCHHHHHHHHHhhccC
Q 001164 583 SEAHIRFQIDRFGPLEHFF-------------FFPIKGFALVEYINIIDAIRAREYIRNH 629 (1134)
Q Consensus 583 te~dL~~~F~~yGpLe~v~-------------~~~~rgfAFVeFr~i~DAi~A~~~L~G~ 629 (1134)
....|..+|++||.|-+.. .....++--|.|.+..+|.+|+.. +|.
T Consensus 18 ~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~ 76 (100)
T PF05172_consen 18 ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGT 76 (100)
T ss_dssp GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTE
T ss_pred HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCe
Confidence 5678999999999987764 556889999999999999999753 443
No 173
>PHA03378 EBNA-3B; Provisional
Probab=68.54 E-value=51 Score=41.84 Aligned_cols=6 Identities=50% Similarity=1.199 Sum_probs=2.5
Q ss_pred cccceE
Q 001164 1079 ECAGVI 1084 (1134)
Q Consensus 1079 ~cAgvI 1084 (1134)
.|.|-.
T Consensus 960 ~~g~~~ 965 (991)
T PHA03378 960 ECGGTT 965 (991)
T ss_pred hcCCcc
Confidence 444443
No 174
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.35 E-value=35 Score=44.63 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=28.4
Q ss_pred hccCCCceEeechh--hhhccCCc---------hHHHHhhhcccCCCc-----hhhhhhhHHHH
Q 001164 189 SSFDGKDIIHTVDK--EITKMLDS---------DEVFLGLKKKFSDED-----ESSLIKLSKFR 236 (1134)
Q Consensus 189 ~~~~g~di~~~~~~--~~~~~~d~---------~e~~~~lk~~~~~~~-----~~~~~~l~~~~ 236 (1134)
.-.++-|||++.+. +++.|+.. .+-+.+||+-+++++ .--+++..|.|
T Consensus 94 ~ki~~vdf~~l~~~~~dFi~l~~~~~~~~~~~~~~~~s~LrkLLssGsFYfS~~fDlt~~~q~r 157 (1080)
T KOG0566|consen 94 GKIEDVDFYSLTNTVWDFISLERSSSPEDTLYPKHPCSELRKLLSSGSFYFSSDFDLTCFAQNR 157 (1080)
T ss_pred ccccceeEEEeccchhhheecccCCCCccccccccchHHHHHHhhCCcEEEeeccchhhHHHhc
Confidence 34567777877777 66666532 256677777766653 12334555555
No 175
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=65.23 E-value=17 Score=35.33 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=40.0
Q ss_pred eEEeccCCCccCH----HHHHHHhhccCC-cceEEEeccCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 572 QLWLGSFGPEASE----AHIRFQIDRFGP-LEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 572 ~LWVGnL~~~vte----~dL~~~F~~yGp-Le~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
.|+|-||+.+..- .-|+.+++-+|= +-+| ..+.|+|-|.+.+.|.+|.+.|.|..+.
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVf 65 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVF 65 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SS
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccc
Confidence 5899999998654 456778888874 3344 3699999999999999999999998765
No 176
>PRK09752 adhesin; Provisional
Probab=63.56 E-value=6.6 Score=51.87 Aligned_cols=11 Identities=18% Similarity=0.087 Sum_probs=8.5
Q ss_pred heeeeccccce
Q 001164 122 VVIYMHNSSVA 132 (1134)
Q Consensus 122 v~i~m~~~~~~ 132 (1134)
+.=+|..|++|
T Consensus 50 ~~~~~~~~~~~ 60 (1250)
T PRK09752 50 LSGITQDWSIA 60 (1250)
T ss_pred ccCCcccceec
Confidence 45689999886
No 177
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=63.47 E-value=18 Score=43.31 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=9.6
Q ss_pred eEeecCHHHHHHHHHHH
Q 001164 697 LMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 697 ~LEFeSeEEAa~ak~~I 713 (1134)
+|+|.+.+||..|...|
T Consensus 77 GLnFqs~~DA~~Fa~~~ 93 (409)
T KOG4590|consen 77 GLTFQSEQDARAFARGV 93 (409)
T ss_pred cccccChhhhhhhhhhh
Confidence 36666666665555544
No 178
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.02 E-value=76 Score=41.18 Aligned_cols=16 Identities=19% Similarity=0.810 Sum_probs=12.4
Q ss_pred cccccccCCCCCCCcc
Q 001164 1011 DICKYTHDISEPAEWP 1026 (1134)
Q Consensus 1011 dIC~~~n~apEPtvWP 1026 (1134)
++|...|..+....|.
T Consensus 244 NlC~~~NdvP~~f~~~ 259 (887)
T KOG1985|consen 244 NLCGRVNDVPDDFDWD 259 (887)
T ss_pred chhhhhcCCcHHhhcC
Confidence 6788888887777776
No 179
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=60.88 E-value=8.9 Score=43.69 Aligned_cols=142 Identities=14% Similarity=0.094 Sum_probs=89.7
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcc-eEEE-----eccCceEEEEecCHHHHHHHHHhhccCcce-EEEEeecc
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLE-HFFF-----FPIKGFALVEYINIIDAIRAREYIRNHFSW-RVKFMDVG 640 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe-~v~~-----~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~-RI~f~r~~ 640 (1134)
...+.+++|++.-++-+.++...|..+|..- .... .+.++|.+|.|..-..+-.|.......... +.-+.+..
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 3467889999999999999999999999544 3333 358999999999999998888777654432 11111110
Q ss_pred ------CCCCcccccccccccceEE-EccCCChhhHHHHHHHHhhccccCCcee-Eec---CCCceeeEeecCHHHHHHH
Q 001164 641 ------LGTKGVINGVAVGSCFHVY-VGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATTA 709 (1134)
Q Consensus 641 ------lGa~G~~~Gva~~~s~~Lw-VG~iss~~~keeilhELykfglk~p~~f-tfl---sde~~a~LEFeSeEEAa~a 709 (1134)
++..+ .+...+++..++ |++++...++++|-.++-..+.+-...+ ++. ..+...++.|.+..++..+
T Consensus 166 ~~~~~~~~n~~--~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~ 243 (285)
T KOG4210|consen 166 TRRGLRPKNKL--SRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLA 243 (285)
T ss_pred ccccccccchh--cccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHH
Confidence 11111 111234566666 9999999999999844444433332222 222 2244556777766655555
Q ss_pred HH
Q 001164 710 MA 711 (1134)
Q Consensus 710 k~ 711 (1134)
+.
T Consensus 244 ~~ 245 (285)
T KOG4210|consen 244 LN 245 (285)
T ss_pred hh
Confidence 44
No 180
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.60 E-value=80 Score=41.56 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=24.3
Q ss_pred CCCceEeechhhhhccCCchHHHHhhhcccCCCch-hhhhhhHHHHHh
Q 001164 192 DGKDIIHTVDKEITKMLDSDEVFLGLKKKFSDEDE-SSLIKLSKFRLL 238 (1134)
Q Consensus 192 ~g~di~~~~~~~~~~~~d~~e~~~~lk~~~~~~~~-~~~~~l~~~~~l 238 (1134)
...-|++|.|-++.+|-+..+.|-.|.....+++- .+...+++||-|
T Consensus 89 ~~~sv~ki~~vdf~~l~~~~~dFi~l~~~~~~~~~~~~~~~~s~LrkL 136 (1080)
T KOG0566|consen 89 GSESVGKIEDVDFYSLTNTVWDFISLERSSSPEDTLYPKHPCSELRKL 136 (1080)
T ss_pred CCceeccccceeEEEeccchhhheecccCCCCccccccccchHHHHHH
Confidence 33446666666666666666555555444444322 223445555544
No 181
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=59.32 E-value=15 Score=43.06 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=46.7
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAH 712 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~ 712 (1134)
.+....||||++-+.+.+.+|..-||.+|=.+ .+..+..+..++++|.|.+-|..|...
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeir--si~~~~~~~CAFv~ftTR~aAE~Aae~ 283 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIR--SIRILPRKGCAFVTFTTREAAEKAAEK 283 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCee--eEEeecccccceeeehhhHHHHHHHHh
Confidence 35689999999999999999999999755222 345566677899999999888776553
No 182
>PRK09752 adhesin; Provisional
Probab=58.88 E-value=9 Score=50.74 Aligned_cols=6 Identities=33% Similarity=0.717 Sum_probs=2.7
Q ss_pred ceEEEc
Q 001164 656 FHVYVG 661 (1134)
Q Consensus 656 ~~LwVG 661 (1134)
..||||
T Consensus 702 ~~~~~~ 707 (1250)
T PRK09752 702 SSLWVG 707 (1250)
T ss_pred heeEEc
Confidence 344554
No 183
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=58.52 E-value=21 Score=40.29 Aligned_cols=60 Identities=18% Similarity=0.174 Sum_probs=43.9
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhccccCCcee-Ee---cCCCceeeEeecCHHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tf---lsde~~a~LEFeSeEEAa~ak~~I 713 (1134)
.++.|-|-|++-...+++|+.=|..||-+-.+.+ ++ =-.+..+++.|.+.|||++|...|
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~L 251 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADL 251 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHc
Confidence 5777999999999999999544444553333222 11 134889999999999999997766
No 184
>smart00361 RRM_1 RNA recognition motif.
Probab=57.52 E-value=17 Score=32.33 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=31.2
Q ss_pred HHHHHHHh----hccccCCce--eEe-----cCCCceeeEeecCHHHHHHHHHHHH
Q 001164 670 DEILHESY----KVVYKGPYM--VTD-----LSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 670 eeilhELy----kfglk~p~~--ftf-----lsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
++|..++. +||....+. +.+ -..++.++++|.+.+||..|+.+|.
T Consensus 3 ~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~ 58 (70)
T smart00361 3 EDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLN 58 (70)
T ss_pred hhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhC
Confidence 45555555 777555542 222 2347889999999999999998874
No 185
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=56.69 E-value=24 Score=43.22 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=87.3
Q ss_pred eeeecCCccccc---ccccCceEEeccCCCccCHHHHHHHhh-ccCCcceEEEe------ccCceEEEEecCHHHHHHHH
Q 001164 554 VWYFDEDPAAMD---IFSASKQLWLGSFGPEASEAHIRFQID-RFGPLEHFFFF------PIKGFALVEYINIIDAIRAR 623 (1134)
Q Consensus 554 ~~~~~g~~~a~d---v~~~s~~LWVGnL~~~vte~dL~~~F~-~yGpLe~v~~~------~~rgfAFVeFr~i~DAi~A~ 623 (1134)
=|.+.-.-+.|| .+-+.|++|||.|+.-++-.||...|+ -||-+.-|-|. .++|-+=|.|.|-.-=++|+
T Consensus 351 PW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AI 430 (520)
T KOG0129|consen 351 PWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAI 430 (520)
T ss_pred eeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHH
Confidence 377766666666 456799999999999999999999999 89999988773 37899999999987768887
Q ss_pred HhhccCcceEEEEeeccCCCCcccccccccccceEEEccCCChhhHHHHHHHHhhc---cccCCceeEecCCCceeeEee
Q 001164 624 EYIRNHFSWRVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKV---VYKGPYMVTDLSCEGALLMEF 700 (1134)
Q Consensus 624 ~~L~G~~~~RI~f~r~~lGa~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykf---glk~p~~ftflsde~~a~LEF 700 (1134)
.+ +|....-+ .-.+.| .|.+.+-+|++.+|..-. +.++|++. .++..+.|
T Consensus 431 sa---------rFvql~h~----------d~~KRV---EIkPYv~eDq~CdeC~g~~c~~q~aPfFC-----~n~~C~QY 483 (520)
T KOG0129|consen 431 SA---------RFVQLDHT----------DIDKRV---EIKPYVMEDQLCDECGGRRCGGQFAPFFC-----RNATCFQY 483 (520)
T ss_pred hh---------heEEEecc----------ccceee---eecceeccccchhhhcCeeccCccCCccc-----CCccHHhh
Confidence 64 23222100 011111 356677789999999873 47777543 45556666
Q ss_pred cCH
Q 001164 701 RTP 703 (1134)
Q Consensus 701 eSe 703 (1134)
+.+
T Consensus 484 YCe 486 (520)
T KOG0129|consen 484 YCE 486 (520)
T ss_pred hch
Confidence 666
No 186
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.32 E-value=38 Score=42.03 Aligned_cols=7 Identities=29% Similarity=0.657 Sum_probs=3.0
Q ss_pred ceecccc
Q 001164 987 YQWQGAL 993 (1134)
Q Consensus 987 ~qWqGsl 993 (1134)
-+|+-.+
T Consensus 469 ~~w~~~~ 475 (585)
T PRK14950 469 AIWKQIL 475 (585)
T ss_pred HHHHHHH
Confidence 3455433
No 187
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=55.93 E-value=91 Score=40.14 Aligned_cols=53 Identities=23% Similarity=0.403 Sum_probs=38.4
Q ss_pred ceEEeccCCCccC-------HHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhc
Q 001164 571 KQLWLGSFGPEAS-------EAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIR 627 (1134)
Q Consensus 571 ~~LWVGnL~~~vt-------e~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~ 627 (1134)
---||-.|-|+-| |+.+..+.++-|==|+|++.| -||| ||++-|-...+-++-
T Consensus 580 ~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRR-AGfA---YRr~F~kF~qRyail 639 (1106)
T KOG0162|consen 580 QPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRR-AGFA---YRRAFDKFAQRYAIL 639 (1106)
T ss_pred CcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehh-hhhH---HHHHHHHHHHHheec
Confidence 3346776665544 678899999999999999965 4777 577777766655543
No 188
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=55.62 E-value=17 Score=42.44 Aligned_cols=62 Identities=11% Similarity=0.244 Sum_probs=49.8
Q ss_pred CceEEeccCCCccCHHHH------HHHhhccCCcceEEEec-------cCceE--EEEecCHHHHHHHHHhhccCcc
Q 001164 570 SKQLWLGSFGPEASEAHI------RFQIDRFGPLEHFFFFP-------IKGFA--LVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL------~~~F~~yGpLe~v~~~~-------~rgfA--FVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
-+-+||-.|++-+..+++ .+-|++||+|..+.+-+ --+-| ||.|-.-+||.+++.+.+|..+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 356799999999888883 57899999999998843 11334 9999999999999988888743
No 189
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=55.37 E-value=18 Score=42.57 Aligned_cols=62 Identities=11% Similarity=0.018 Sum_probs=51.4
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec---CCCceeeEeecCHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl---sde~~a~LEFeSeEEAa~ak~~I 713 (1134)
+-|-+.|+|-++-+.+.+|+++.-|..||....+.+ ++. -+=+.+++||++.+.+.+|.-.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKM 301 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKM 301 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhh
Confidence 347999999999999999999999999998888755 222 23567899999999998877766
No 190
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=54.92 E-value=20 Score=37.52 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=47.5
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec---CCCceeeEeecCHHHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl---sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.--.|+|-+|.....+|+|-.-|-.||-+.-+-+ .+- -...++++||+|.+||..|+..++
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~N 135 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALN 135 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhcc
Confidence 4567899999999999999888887774444422 111 237889999999999999998876
No 191
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=54.10 E-value=1.3e+02 Score=36.13 Aligned_cols=139 Identities=17% Similarity=0.050 Sum_probs=88.5
Q ss_pred eccCCCccCHHHHHHHhhccC----CcceEEEec-----cCceEEEEecCHHHHHHHHHh---hccCcce----------
Q 001164 575 LGSFGPEASEAHIRFQIDRFG----PLEHFFFFP-----IKGFALVEYINIIDAIRAREY---IRNHFSW---------- 632 (1134)
Q Consensus 575 VGnL~~~vte~dL~~~F~~yG----pLe~v~~~~-----~rgfAFVeFr~i~DAi~A~~~---L~G~~~~---------- 632 (1134)
.-.|+-++++.|+.+.|..-- -.+.|.|.. +-|=|||.|...+||-.|..- +-|++-.
T Consensus 166 mRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEv 245 (508)
T KOG1365|consen 166 MRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEV 245 (508)
T ss_pred ecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Confidence 356888999999999997443 445666642 558999999999999777643 3343311
Q ss_pred ---EEEEeeccCCC---Ccccccccc------cccceEEEccCCChhhHHHHHHHHhhccccCCc-ee-Eec----CCCc
Q 001164 633 ---RVKFMDVGLGT---KGVINGVAV------GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MV-TDL----SCEG 694 (1134)
Q Consensus 633 ---RI~f~r~~lGa---~G~~~Gva~------~~s~~LwVG~iss~~~keeilhELykfglk~p~-~f-tfl----sde~ 694 (1134)
--|++..+|+. -+.+.|+.. +...-|-.-+++=.-.+|+|++-|..|.+.-.+ .+ -.+ .-..
T Consensus 246 qqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSG 325 (508)
T KOG1365|consen 246 QQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSG 325 (508)
T ss_pred HHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcCh
Confidence 01222222221 111222222 235568889999999999999999887543333 11 111 2256
Q ss_pred eeeEeecCHHHHHHHHHHH
Q 001164 695 ALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 695 ~a~LEFeSeEEAa~ak~~I 713 (1134)
.++++|.++|+|..++..-
T Consensus 326 eAFIqm~nae~a~aaaqk~ 344 (508)
T KOG1365|consen 326 EAFIQMRNAERARAAAQKC 344 (508)
T ss_pred hhhhhhhhhHHHHHHHHHH
Confidence 7899999999887776544
No 192
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=52.97 E-value=26 Score=40.62 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=51.4
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCc-eeEec---CCCceeeEeecCHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MVTDL---SCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~-~ftfl---sde~~a~LEFeSeEEAa~ak~~I 713 (1134)
-+-+.|+||.++=.+++.+|..||-++|-+.-+ .+++. .....+||+|.++-|-..|.++.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~a 163 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDA 163 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhc
Confidence 378999999999999999999999998866665 44442 34899999999999988888776
No 193
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=52.79 E-value=24 Score=43.51 Aligned_cols=65 Identities=17% Similarity=0.089 Sum_probs=52.0
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHHHHh
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IRQ~r 717 (1134)
..+.+.|||=+++..++.++++.-|-.+|=++++.. ....++.++++|+..-+|.+|.+.||.++
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-t~~~~~~~~v~FyDvR~A~~Alk~l~~~~ 136 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-TPNKRGIVFVEFYDVRDAERALKALNRRE 136 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-ccccCceEEEEEeehHhHHHHHHHHHHHH
Confidence 447899999999999999999998887765544222 23347889999999999999999997444
No 194
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.98 E-value=56 Score=37.60 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=9.1
Q ss_pred HHHHHHHHHH-HHhhccccC
Q 001164 705 EATTAMAHLR-QHRKSRSNY 723 (1134)
Q Consensus 705 EAa~ak~~IR-Q~rRerSq~ 723 (1134)
|+.++...|+ +++--|.|.
T Consensus 49 e~rk~lsgLm~~lealkkql 68 (338)
T KOG0917|consen 49 ECRKFLSGLMDQLEALKKQL 68 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 5555555543 444345553
No 195
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=49.87 E-value=60 Score=39.01 Aligned_cols=100 Identities=13% Similarity=0.115 Sum_probs=62.5
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEE----EeccCceEEEEecCHHHHHHHHHhhccCcceEEEEeeccCCCC
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFF----FFPIKGFALVEYINIIDAIRAREYIRNHFSWRVKFMDVGLGTK 644 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~----~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~RI~f~r~~lGa~ 644 (1134)
-+|+=||.|..=|| .-.+|..++.|-.=| +..+-..||+.|..+-...++...=.|.-++|.-.-|.|-=|-
T Consensus 221 Ltcnd~iS~FEFDv----FTRLFqPw~tllkNWq~LavtHPGYmAFLTYDEVk~RLqk~~~KpGSYIFRlSCTRlGQWAI 296 (563)
T KOG1785|consen 221 LTCNDFISNFEFDV----FTRLFQPWKTLLKNWQTLAVTHPGYMAFLTYDEVKARLQKYIKKPGSYIFRLSCTRLGQWAI 296 (563)
T ss_pred cccccceeeehhhh----HHHhhccHHHHHHhhhhhhccCCceeEEeeHHHHHHHHHHHhcCCCceEEeeccCcccceeE
Confidence 35666666655444 246788888876544 3346677999999988888888888899888888777752111
Q ss_pred cccccccccccceEEEccCCChhhHHHHHHHHhh
Q 001164 645 GVINGVAVGSCFHVYVGNIPNQWAKDEILHESYK 678 (1134)
Q Consensus 645 G~~~Gva~~~s~~LwVG~iss~~~keeilhELyk 678 (1134)
|- |++-..|+ --|+-...--|.++|-.+
T Consensus 297 GY-----Vt~dG~Il-QTIP~NKpL~QaL~eG~k 324 (563)
T KOG1785|consen 297 GY-----VTADGNIL-QTIPQNKPLFQALLEGHK 324 (563)
T ss_pred EE-----EcCCCcee-eccCCCcHHHHHHHhccc
Confidence 11 11222222 234555555566666655
No 196
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=49.85 E-value=2.1e+02 Score=39.23 Aligned_cols=18 Identities=28% Similarity=0.658 Sum_probs=10.2
Q ss_pred HhhccccccccCchhHhh
Q 001164 101 VADLVPRYALYCPTALEA 118 (1134)
Q Consensus 101 ~a~~iprya~~cptal~a 118 (1134)
+-|+|=|||-+-|-++-+
T Consensus 1187 l~~iIdrfafv~ppvva~ 1204 (1958)
T KOG0391|consen 1187 LQDIIDRFAFVIPPVVAA 1204 (1958)
T ss_pred HHHHHHHheeecccccCC
Confidence 345566666666655544
No 197
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.63 E-value=8.4e+02 Score=32.66 Aligned_cols=12 Identities=17% Similarity=0.105 Sum_probs=6.0
Q ss_pred hHHHhhhhcccC
Q 001164 1091 SIWARLMFILPY 1102 (1134)
Q Consensus 1091 ~~i~~~L~lvPe 1102 (1134)
+.||.+|+-+|.
T Consensus 441 e~ik~~l~~lp~ 452 (1007)
T KOG1984|consen 441 EAIKSVLEDLPR 452 (1007)
T ss_pred HHHHHHHhhcCc
Confidence 455555555543
No 198
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=47.49 E-value=29 Score=41.68 Aligned_cols=10 Identities=0% Similarity=0.112 Sum_probs=4.3
Q ss_pred HhhhhcccCc
Q 001164 1094 ARLMFILPYS 1103 (1134)
Q Consensus 1094 ~~~L~lvPeS 1103 (1134)
..+++.+...
T Consensus 338 ~sm~~~~~~~ 347 (409)
T KOG4590|consen 338 PSMLYHCMSD 347 (409)
T ss_pred cchhhccccc
Confidence 3344444443
No 199
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.41 E-value=4.1e+02 Score=35.87 Aligned_cols=7 Identities=71% Similarity=1.141 Sum_probs=3.0
Q ss_pred hhccCCC
Q 001164 188 ISSFDGK 194 (1134)
Q Consensus 188 ~~~~~g~ 194 (1134)
+++|+||
T Consensus 314 ~asfdgk 320 (1049)
T KOG0307|consen 314 AASFDGK 320 (1049)
T ss_pred hheeccc
Confidence 3444444
No 200
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=47.14 E-value=24 Score=44.69 Aligned_cols=62 Identities=15% Similarity=0.166 Sum_probs=47.2
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhccccCCceeE-------ecCCCceeeEeecCHHHHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-------DLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk~p~~ft-------flsde~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
...+|||||++++++++.++..|=+||-...+.+. .-++++.-++-|-+..||.+|+++|+-
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg 241 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQG 241 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcc
Confidence 58899999999999999998776554422222221 125688899999999999999999953
No 201
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=45.53 E-value=16 Score=40.59 Aligned_cols=61 Identities=18% Similarity=0.318 Sum_probs=42.7
Q ss_pred cccceEEEccCCChhhHHHHHHHHhh-ccccCC----ceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYK-VVYKGP----YMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELyk-fglk~p----~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..-|.||||++-..++ |.+||-... ||-+.. +.|-...-+...+++|+-.|||+.|+-+|+
T Consensus 8 ~~KrtlYVGGladeVt-ekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMn 73 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVT-EKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMN 73 (298)
T ss_pred ccceeEEeccchHHHH-HHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCc
Confidence 3568999999987765 456666555 542222 233333346778899999999999999985
No 202
>PLN00131 hypothetical protein; Provisional
Probab=45.52 E-value=40 Score=35.90 Aligned_cols=55 Identities=25% Similarity=0.565 Sum_probs=39.5
Q ss_pred CCcccccccccCCCCCCCCCC---CCCCCCCCCCCCCCCCHHHHHHHh-hchHHHHHHHH
Q 001164 5 EQPLKKRKLYDLPPESPKPVE---GPQSDVVPPQTPPPLSQDEIQSRR-RNKDEIRSVYE 60 (1134)
Q Consensus 5 ~~p~kkr~l~~~p~~~p~p~~---~~~~~~~~~~~~~p~~~ee~~~~~-rn~~e~~~~~~ 60 (1134)
..-+-||-..++-+. |||.. .+|++-.-|.++||+...+.+.|| |-.||+|-+.+
T Consensus 89 ~~~~SrrP~~DLNst-pqpeldlnqpaaheqepepapplddqdlltkrkrvseelrlllq 147 (218)
T PLN00131 89 DAGPSRRPVLDLNST-PQPELDLNQPAAHEQEPEPAPPLDDQDLLTKRKRVSEELRLLLQ 147 (218)
T ss_pred CCCcCcCCcccCCCC-CCcccccCCccccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 345677888887776 66665 344455578888999887777765 67889988775
No 203
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=44.77 E-value=37 Score=37.52 Aligned_cols=64 Identities=22% Similarity=0.223 Sum_probs=47.7
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhc-cccCCcee----EecCCCceeeEeecCHHHHHHHHHHHHHHh
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKV-VYKGPYMV----TDLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykf-glk~p~~f----tflsde~~a~LEFeSeEEAa~ak~~IRQ~r 717 (1134)
....+||+.++.-.-+.+++.-+.-| |-...+.. +.=.+.+.+++||+++|.|..+-..|+.+.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYL 116 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYL 116 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhh
Confidence 45678999999999888888877775 32222222 233568999999999999999988886554
No 204
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=44.58 E-value=27 Score=41.85 Aligned_cols=90 Identities=23% Similarity=0.459 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHhccCCchHHHHHHhhccccccccCchhHhhhhhheeeeccccce
Q 001164 53 DEIRSVYECYRRLKACIAQKDARRLPELEQAYLSLITASRGCTSVQRIVADLVPRYALYCPTALEAATEVVIYMHNSSVA 132 (1134)
Q Consensus 53 ~e~~~~~~~y~~~~~~~~~~~~~~~~~le~~y~~li~~s~gc~svqri~a~~iprya~~cptal~aa~~v~i~m~~~~~~ 132 (1134)
+-|.++|++|.||-..-.+ . +=-++|.-+|.++.|-+--+|+.|-+||||--|-|.--.-|.-+-.|.
T Consensus 2 ~~ie~ly~~~e~l~~a~dk-----~-q~v~~y~~il~~~k~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~------ 69 (460)
T KOG2213|consen 2 DNIEKLYEFYEILSEATDK-----S-QHVDDYEGILKAVKGTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDL------ 69 (460)
T ss_pred chHHHHHHHHHHHHhhchh-----h-hhHHHHHHHHHHhhcchHHHHHHHHHHHHHHhhCchhhhHHHHhhhcc------
Confidence 3578999999998543211 1 344789999999999999999999999999999886444444333332
Q ss_pred eeccCCCCcchhhhhhhhhhccccccccc
Q 001164 133 LINRGEDADGVAFQTASACIFGLGDICRT 161 (1134)
Q Consensus 133 ~~~rg~d~~gva~~ta~aci~gl~dic~~ 161 (1134)
. .+|--||.-| -|-||--.|-.
T Consensus 70 -~--ed~d~~ir~q----aik~lp~fc~~ 91 (460)
T KOG2213|consen 70 -C--EDDDVGIRRQ----AIKGLPLFCKG 91 (460)
T ss_pred -c--cccchhhHHH----HHhccchhccC
Confidence 1 1222245444 47788877754
No 205
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=43.75 E-value=35 Score=39.99 Aligned_cols=59 Identities=19% Similarity=0.119 Sum_probs=50.8
Q ss_pred cceEEEccCCChhhHHHHHHHHhhccccCCceeEe--cCCCceeeEeecCHHHHHHHHHHH
Q 001164 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD--LSCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 655 s~~LwVG~iss~~~keeilhELykfglk~p~~ftf--lsde~~a~LEFeSeEEAa~ak~~I 713 (1134)
-|.|+|.||+=..-+.++...|-+||+.-...++| -+++..=++-|++.+||.++...+
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~L 156 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAEL 156 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHh
Confidence 58999999999999999999999998777765544 467888889999999999998877
No 206
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=43.32 E-value=88 Score=30.49 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=43.7
Q ss_pred cCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcceEEE
Q 001164 577 SFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSWRVK 635 (1134)
Q Consensus 577 nL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~RI~ 635 (1134)
..+..=-..||..+|+.||.|.==|+-- .-|||...+-+.|-.|++.+.=...++|.
T Consensus 15 tFPkeWK~~DI~qlFspfG~I~VsWi~d--TSAfV~l~~r~~~~~v~~~~~~~~~y~i~ 71 (87)
T PF08675_consen 15 TFPKEWKTSDIYQLFSPFGQIYVSWIND--TSAFVALHNRDQAKVVMNTLKKNSSYRIQ 71 (87)
T ss_dssp E--TT--HHHHHHHCCCCCCEEEEEECT--TEEEEEECCCHHHHHHHHHHTT-SSSEEE
T ss_pred eCchHhhhhhHHHHhccCCcEEEEEEcC--CcEEEEeecHHHHHHHHHHhccCCceEEE
Confidence 3777788899999999999998777744 88999999999999999988765555554
No 207
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=43.30 E-value=54 Score=37.42 Aligned_cols=75 Identities=20% Similarity=0.143 Sum_probs=51.5
Q ss_pred HHHHHHhhccCcce----EEEEeeccCCCCcccccccccccceEEEccCCChhhHHHHHHHHhhccccCCc-eeEecCCC
Q 001164 619 AIRAREYIRNHFSW----RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MVTDLSCE 693 (1134)
Q Consensus 619 Ai~A~~~L~G~~~~----RI~f~r~~lGa~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~-~ftflsde 693 (1134)
|.-|+.+|+|..+. ||+|+ ....|||-+++....-|.+++++..|+-.... .+.+...+
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa----------------~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k 70 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFA----------------MHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGK 70 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEee----------------ccceEEEEecchhhhhHHHHHhhhhcCccchheeeeccccc
Confidence 67789999999876 88887 12679999999999999999999987644332 33444332
Q ss_pred ce--eeEeecCHHHHHHH
Q 001164 694 GA--LLMEFRTPEEATTA 709 (1134)
Q Consensus 694 ~~--a~LEFeSeEEAa~a 709 (1134)
.. =.++|++.-.|..+
T Consensus 71 ~t~eg~v~~~~k~~a~~a 88 (275)
T KOG0115|consen 71 PTREGIVEFAKKPNARKA 88 (275)
T ss_pred ccccchhhhhcchhHHHH
Confidence 21 12555555444444
No 208
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.57 E-value=58 Score=38.39 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=13.8
Q ss_pred chhhhhHHHHhhhccccceEeccc
Q 001164 1065 HKGFQDFVSYLKQRECAGVIKIPA 1088 (1134)
Q Consensus 1065 ~k~fqdFi~yL~Qk~cAgvIKip~ 1088 (1134)
+...+|-+-+|+..=|.|+|-|+.
T Consensus 312 d~aieD~i~~L~~~~r~G~i~l~~ 335 (365)
T KOG2391|consen 312 DLAIEDAIYSLGKSLRDGVIDLDQ 335 (365)
T ss_pred hhHHHHHHHHHHHHHhcCeeeHHH
Confidence 344556665666555667765543
No 209
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=42.53 E-value=51 Score=40.95 Aligned_cols=69 Identities=12% Similarity=0.069 Sum_probs=53.1
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhc--cCCcceEEEeccCceEEEEecCHHHHHHHHHhh-------ccCcce-EEE
Q 001164 566 IFSASKQLWLGSFGPEASEAHIRFQIDR--FGPLEHFFFFPIKGFALVEYINIIDAIRAREYI-------RNHFSW-RVK 635 (1134)
Q Consensus 566 v~~~s~~LWVGnL~~~vte~dL~~~F~~--yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L-------~G~~~~-RI~ 635 (1134)
-...-|-+.+-.|+....+++++.+|.- .=+.-+.-|+..-++ ||.|++-.||-.|.++| +||.++ ||+
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~nW-yITfesd~DAQqAykylreevk~fqgKpImARIK 249 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDNW-YITFESDTDAQQAYKYLREEVKTFQGKPIMARIK 249 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCce-EEEeecchhHHHHHHHHHHHHHhhcCcchhhhhh
Confidence 3455678899999999999999999975 345555566555444 89999999998887766 466666 776
No 210
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=41.95 E-value=3.9e+02 Score=34.65 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=18.0
Q ss_pred EecCCCceeeEeecCHHHHHHHHHH
Q 001164 688 TDLSCEGALLMEFRTPEEATTAMAH 712 (1134)
Q Consensus 688 tflsde~~a~LEFeSeEEAa~ak~~ 712 (1134)
+.=++...+++-|.|-|||.-+|..
T Consensus 35 IIGGe~GeaFI~FsTDeDARlaM~k 59 (944)
T KOG4307|consen 35 IIGGEEGEAFIGFSTDEDARLAMTK 59 (944)
T ss_pred EecccccceEEEecccchhhhhhhh
Confidence 3335577888888888888777653
No 211
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=40.87 E-value=40 Score=40.67 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=41.7
Q ss_pred cceEEEccCCChhhHHHHHHHHhhccccCCcee--EecCC--CceeeEeecCHHHHHHH
Q 001164 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV--TDLSC--EGALLMEFRTPEEATTA 709 (1134)
Q Consensus 655 s~~LwVG~iss~~~keeilhELykfglk~p~~f--tflsd--e~~a~LEFeSeEEAa~a 709 (1134)
-.+|||++++...+.++|..+|++||-+....+ +-... -|..+++|++.+++..+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~ 346 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNA 346 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhh
Confidence 334999999999999999999999985555544 33223 38889999998777553
No 212
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=37.50 E-value=51 Score=38.10 Aligned_cols=52 Identities=12% Similarity=0.079 Sum_probs=43.1
Q ss_pred CCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcc-eEEEeccCceEEEEecCHH
Q 001164 559 EDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLE-HFFFFPIKGFALVEYINII 617 (1134)
Q Consensus 559 g~~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe-~v~~~~~rgfAFVeFr~i~ 617 (1134)
|.+++-| +|||||+.|+.-.||..++.+-|-.- ++.-.-.+|-||+.|-|-.
T Consensus 326 ~a~~~~d-------i~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 326 EAGAKTD-------IKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred cCccccc-------eeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCcc
Confidence 5667777 79999999999999999999888665 4444568999999998754
No 213
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=37.15 E-value=2e+02 Score=37.67 Aligned_cols=18 Identities=50% Similarity=0.822 Sum_probs=12.4
Q ss_pred HHHhccCCc--hHHHHHHhh
Q 001164 86 SLITASRGC--TSVQRIVAD 103 (1134)
Q Consensus 86 ~li~~s~gc--~svqri~a~ 103 (1134)
+|+..-+|| |++=||+|-
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr 59 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILAR 59 (824)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 377888877 666666664
No 214
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=36.95 E-value=24 Score=41.20 Aligned_cols=60 Identities=8% Similarity=0.117 Sum_probs=47.2
Q ss_pred CceEEeccCCCccCHHHHHH---HhhccCCcceEEEeccCc---------eEEEEecCHHHHHHHHHhhccC
Q 001164 570 SKQLWLGSFGPEASEAHIRF---QIDRFGPLEHFFFFPIKG---------FALVEYINIIDAIRAREYIRNH 629 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~---~F~~yGpLe~v~~~~~rg---------fAFVeFr~i~DAi~A~~~L~G~ 629 (1134)
-+-+||=.|++++..+++.+ -|++||.|-.|.+++.++ -++|.|+.-+||.+|++.-+|.
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~ 148 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGF 148 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhH
Confidence 35678888888865555543 588889999999887441 3799999999999999998886
No 215
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.15 E-value=3.1e+02 Score=33.87 Aligned_cols=12 Identities=25% Similarity=0.634 Sum_probs=6.2
Q ss_pred HHHHhhccCCcc
Q 001164 587 IRFQIDRFGPLE 598 (1134)
Q Consensus 587 L~~~F~~yGpLe 598 (1134)
|=.+|+-||++-
T Consensus 247 lG~I~EiFGpV~ 258 (483)
T KOG2236|consen 247 LGQIFEIFGPVK 258 (483)
T ss_pred chhhhhhhcccC
Confidence 344555555554
No 216
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=35.11 E-value=1.4e+02 Score=38.52 Aligned_cols=17 Identities=12% Similarity=0.247 Sum_probs=7.6
Q ss_pred HHHHHhhccCCcceEEE
Q 001164 586 HIRFQIDRFGPLEHFFF 602 (1134)
Q Consensus 586 dL~~~F~~yGpLe~v~~ 602 (1134)
..+...+.++.+..+.+
T Consensus 114 ~~~~~~~~~~~~~~~~~ 130 (833)
T KOG1922|consen 114 MSMCLSEKLLPLQWLLL 130 (833)
T ss_pred HHHhhcccccchhhhHH
Confidence 33344455555544433
No 217
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=34.03 E-value=12 Score=42.69 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=37.0
Q ss_pred cCHHHHHHHhhccCCcceEEEe-----c----c-------Cce---------EEEEecCHHHHHHHHHhhccCcc
Q 001164 582 ASEAHIRFQIDRFGPLEHFFFF-----P----I-------KGF---------ALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 582 vte~dL~~~F~~yGpLe~v~~~-----~----~-------rgf---------AFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
-+|+-|+..|+.||.|++|.+- + . .|| |||.|..-.--+.|+++|+|..+
T Consensus 173 pse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchH
Confidence 5789999999999999999871 1 1 134 45666666666788888888754
No 218
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.20 E-value=19 Score=43.29 Aligned_cols=109 Identities=23% Similarity=0.393 Sum_probs=62.4
Q ss_pred CCCCCHHHHHHHhhc----hHHHHHHHHHHHH--HHHHHhhcccCCchHHHHHHH----------HHHhccCCchHHHHH
Q 001164 37 PPPLSQDEIQSRRRN----KDEIRSVYECYRR--LKACIAQKDARRLPELEQAYL----------SLITASRGCTSVQRI 100 (1134)
Q Consensus 37 ~~p~~~ee~~~~~rn----~~e~~~~~~~y~~--~~~~~~~~~~~~~~~le~~y~----------~li~~s~gc~svqri 100 (1134)
.+++.++=+..+.++ .+++++=+..||- ||..|.+ -+-+|=+-|. .-..+=-=|||..-+
T Consensus 111 ~~~~D~~WvE~~~~~a~~~le~L~~eLk~yK~n~iKEsiRr----a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khv 186 (466)
T KOG0686|consen 111 GYLLDEKWVETNNKKAVLKLEKLDNELKSYKDNLIKESIRR----ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHV 186 (466)
T ss_pred ccccchHHHHHhhHHHHHHHHHHHHHHHHhhcchhhHHHHH----HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHH
Confidence 455666655555544 5788888888873 6665543 3344555554 222211145554443
Q ss_pred HhhccccccccCchhHhhhhhheeeecccc--ceeeccCCCC-cc---hhhh-hhh-hhhccccccccc
Q 001164 101 VADLVPRYALYCPTALEAATEVVIYMHNSS--VALINRGEDA-DG---VAFQ-TAS-ACIFGLGDICRT 161 (1134)
Q Consensus 101 ~a~~iprya~~cptal~aa~~v~i~m~~~~--~~~~~rg~d~-~g---va~~-ta~-aci~gl~dic~~ 161 (1134)
+= .--...+|.|.|-||+ ++.+++-+-. ++ ++.| ++| -|..||+.+|--
T Consensus 187 In------------m~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lk 243 (466)
T KOG0686|consen 187 IN------------MCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLK 243 (466)
T ss_pred HH------------HHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHH
Confidence 31 1236789999999998 4555655544 11 1111 122 399999999854
No 219
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=33.13 E-value=3.7e+02 Score=35.47 Aligned_cols=10 Identities=30% Similarity=0.707 Sum_probs=4.7
Q ss_pred ccceeccccc
Q 001164 985 LQYQWQGALC 994 (1134)
Q Consensus 985 ~~~qWqGsl~ 994 (1134)
+.=+|.-.+.
T Consensus 512 lr~~W~~Il~ 521 (824)
T PRK07764 512 LRERWPEILA 521 (824)
T ss_pred HHHHHHHHHH
Confidence 4444554444
No 220
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=32.99 E-value=1.3e+02 Score=29.65 Aligned_cols=58 Identities=22% Similarity=0.439 Sum_probs=43.8
Q ss_pred eEEEccCCChhhHHHHHHHHhhccccCCcee----EecCC---CceeeEeecCHHHHHHHHHHHHH
Q 001164 657 HVYVGNIPNQWAKDEILHESYKVVYKGPYMV----TDLSC---EGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 657 ~LwVG~iss~~~keeilhELykfglk~p~~f----tflsd---e~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
.|-|-+||+..+.+.+++++... .++.+.| .+... -+.+++||.+.+.|..+...+..
T Consensus 3 TvMirNIPn~~t~~~L~~~l~~~-~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g 67 (97)
T PF04059_consen 3 TVMIRNIPNKYTQEMLIQILDEH-FKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNG 67 (97)
T ss_pred eEEEecCCCCCCHHHHHHHHHHh-ccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcC
Confidence 45688999999999999998763 4566633 34433 55677999999999998888743
No 221
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=32.56 E-value=90 Score=38.92 Aligned_cols=78 Identities=13% Similarity=0.088 Sum_probs=56.0
Q ss_pred cccccccCceEE-ecc-CCCccCHHHHHHHh----hccCCcceEEEe--c---cCceEEEEecCHHHHHHHHHhhc--cC
Q 001164 563 AMDIFSASKQLW-LGS-FGPEASEAHIRFQI----DRFGPLEHFFFF--P---IKGFALVEYINIIDAIRAREYIR--NH 629 (1134)
Q Consensus 563 a~dv~~~s~~LW-VGn-L~~~vte~dL~~~F----~~yGpLe~v~~~--~---~rgfAFVeFr~i~DAi~A~~~L~--G~ 629 (1134)
+++|+.+..++. +|. ...+++.-||..+| +-||=|..+++. + .+.++++.|.+++||++|+..+. |-
T Consensus 257 ~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~~~g~ 336 (555)
T PLN02805 257 SLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATMLSGI 336 (555)
T ss_pred EEEEEcCCceEEEecCccccCCCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHHhCCC
Confidence 667777766654 442 22334556888876 568889988874 3 46788999999999999998876 44
Q ss_pred cceEEEEeecc
Q 001164 630 FSWRVKFMDVG 640 (1134)
Q Consensus 630 ~~~RI~f~r~~ 640 (1134)
.+..+||||..
T Consensus 337 ~psa~ElmD~~ 347 (555)
T PLN02805 337 QVSRVELLDEV 347 (555)
T ss_pred CcEEEEEECHH
Confidence 45599999863
No 222
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=32.21 E-value=77 Score=39.12 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=16.8
Q ss_pred cccceecccccccCcccceeeeeeccCcccccccCCCCCCC
Q 001164 984 LLQYQWQGALCKSGVHYCTIYAQREESDICKYTHDISEPAE 1024 (1134)
Q Consensus 984 ~~~~qWqGsl~KsGtnyC~~~c~~vdsdIC~~~n~apEPtv 1024 (1134)
.+-+-|+..-..+|--+- -+--|...|+.-.|..
T Consensus 284 ~~KL~Wr~~~~~~~~Gv~-------~~r~~~t~W~s~D~~~ 317 (817)
T KOG1925|consen 284 TVKLFWRDVKLAGGHGVS-------ASRPCATLWASLDPVS 317 (817)
T ss_pred eeEEEeecceecCCCCCc-------cccccchhhhccCcce
Confidence 355667776554443222 2233444555555554
No 223
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=32.20 E-value=4.8e+02 Score=34.20 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=14.3
Q ss_pred HHHhccCCchHHHHHHhhccccc
Q 001164 86 SLITASRGCTSVQRIVADLVPRY 108 (1134)
Q Consensus 86 ~li~~s~gc~svqri~a~~ipry 108 (1134)
++-.+|-|-++||+| -|+|-+-
T Consensus 127 YIs~vS~~g~kvq~v-kdiiL~s 148 (1106)
T KOG0162|consen 127 YISRVSGGGEKVQHV-KDIILQS 148 (1106)
T ss_pred HHHHhccCCcchhhh-hhHhhcc
Confidence 333445788999985 5776543
No 224
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=30.15 E-value=51 Score=40.20 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=5.5
Q ss_pred cCcccceeeee
Q 001164 996 SGVHYCTIYAQ 1006 (1134)
Q Consensus 996 sGtnyC~~~c~ 1006 (1134)
.|++++.|.+.
T Consensus 37 ~G~p~~~I~tr 47 (465)
T PF01690_consen 37 EGVPQTKISTR 47 (465)
T ss_pred ecccceeeecc
Confidence 45555555443
No 225
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=30.13 E-value=1.1e+02 Score=32.30 Aligned_cols=45 Identities=11% Similarity=0.066 Sum_probs=37.5
Q ss_pred HHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 585 AHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 585 ~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
.+|...|..||.+.=|+|.. +--+|.|++-.-|.+|. .|+|..++
T Consensus 51 ~~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaal-s~dg~~v~ 95 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAAL-SLDGIQVN 95 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHH-HGCCSEET
T ss_pred HHHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHH-ccCCcEEC
Confidence 47889999999888777766 68899999999999995 68998776
No 226
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=28.60 E-value=84 Score=37.22 Aligned_cols=66 Identities=17% Similarity=0.090 Sum_probs=56.1
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcce--------EEEe------ccCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEH--------FFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 567 ~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~--------v~~~------~~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
.+-..++||=.|+..+++.+|.+.|...|.|.. +|+| .+|+=|.|-|.|.--|.+|+....|+..+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 344556788899999999999999999998852 4554 37899999999999999999999999765
No 227
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.58 E-value=1.6e+02 Score=35.06 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=9.7
Q ss_pred cccCCCCCCCccCccC
Q 001164 818 FQSNWSVSGRTEMPEA 833 (1134)
Q Consensus 818 f~s~~~~pGst~vpe~ 833 (1134)
|-.+|..++++++..+
T Consensus 113 YLh~W~~pssdLv~Li 128 (365)
T KOG2391|consen 113 YLHNWDPPSSDLVGLI 128 (365)
T ss_pred hhccCCCccchHHHHH
Confidence 4466777776655543
No 228
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=28.41 E-value=91 Score=35.41 Aligned_cols=7 Identities=14% Similarity=-0.296 Sum_probs=3.0
Q ss_pred cCccCCc
Q 001164 829 EMPEAGF 835 (1134)
Q Consensus 829 ~vpe~gp 835 (1134)
++.++.+
T Consensus 73 ~R~~~~~ 79 (253)
T PF05308_consen 73 FRSEVRP 79 (253)
T ss_pred eeccccc
Confidence 4444433
No 229
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.13 E-value=2.8e+02 Score=33.32 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=10.7
Q ss_pred HHHHHHHhhccC----CcceEEEec
Q 001164 584 EAHIRFQIDRFG----PLEHFFFFP 604 (1134)
Q Consensus 584 e~dL~~~F~~yG----pLe~v~~~~ 604 (1134)
...|-.+|..-| ||-..++|+
T Consensus 205 f~Qlvki~~slG~e~fPli~qt~yP 229 (488)
T KOG3895|consen 205 FAQLVKITKSLGPEKFPLIEQTFYP 229 (488)
T ss_pred HHHHHHHHHhcCccccccceeeecC
Confidence 345555665555 344444444
No 230
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=25.50 E-value=9.7e+02 Score=28.90 Aligned_cols=19 Identities=11% Similarity=-0.095 Sum_probs=9.5
Q ss_pred ceEeccchhhHHHhhhhcc
Q 001164 1082 GVIKIPAVKSIWARLMFIL 1100 (1134)
Q Consensus 1082 gvIKip~~~~~i~~~L~lv 1100 (1134)
+++.|...++.++.++..+
T Consensus 327 Kv~~MGf~rDqV~a~v~rl 345 (358)
T PF07223_consen 327 KVASMGFRRDQVRATVRRL 345 (358)
T ss_pred HHHHcCCcHHHHHHHHHHH
Confidence 3445555555555544444
No 231
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=25.18 E-value=51 Score=39.38 Aligned_cols=90 Identities=12% Similarity=0.219 Sum_probs=52.6
Q ss_pred CCCccccccCCccchhhhhccccccCCCCCc---ccc--c-c------ccCCCCCchhhhhHHHHhhhcccc------ce
Q 001164 1022 PAEWPAKLDMTKRTDFRHVKSTFTSTPPNKR---EVC--R-L------VPSSPGDHKGFQDFVSYLKQRECA------GV 1083 (1134)
Q Consensus 1022 PtvWPs~lD~T~RtDfd~LEslFs~tPP~kk---EVc--r-L------vP~s~~D~k~fqdFi~yL~Qk~cA------gv 1083 (1134)
.++|..+.+.. ..|++.++.+|+....... .+- + . ..-...|.+..|++.|.|+..+.. +.
T Consensus 25 ~tvW~~i~~~~-~~d~~~lE~lF~~k~~~~~~~~~~~~~~~~~~~~~~~~v~ild~krs~ni~I~L~~l~~~~~ei~~ai 103 (432)
T smart00498 25 GTVWDKIDENS-EGDLDELEELFAAKEKTKSASKDVSEKKSILKKKVSQEFKILDPKRSQNLAILLRKLHMSYEEICEAI 103 (432)
T ss_pred CChhhhcCccc-ccCHHHHHHHhCcCccccCccccccccccccccccccceEeechhHHhhHHHHHHhcCCCHHHHHHHH
Confidence 47898876664 7899999999997433211 100 0 0 112467889999999999775432 22
Q ss_pred Eeccc--h-hhHHHhhhhcccCcccccccccc
Q 001164 1084 IKIPA--V-KSIWARLMFILPYSQDICSMLSI 1112 (1134)
Q Consensus 1084 IKip~--~-~~~i~~~L~lvPeS~e~~s~L~v 1112 (1134)
..++. + .+.++.++..+|..+++.....+
T Consensus 104 ~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~ 135 (432)
T smart00498 104 LEGDEDVLSVDLLEQLLKYAPTKEELKKLREY 135 (432)
T ss_pred HhcChhhCCHHHHHHHHhhCcCHHHHHHHHHh
Confidence 22221 1 14566666666666655554443
No 232
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=24.65 E-value=81 Score=36.64 Aligned_cols=146 Identities=11% Similarity=0.177 Sum_probs=92.0
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEeccC-------------ceEEEEecCHHHHHHHHHh-----------
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK-------------GFALVEYINIIDAIRAREY----------- 625 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~r-------------gfAFVeFr~i~DAi~A~~~----------- 625 (1134)
+|.|-.-|+-.++.=..+...|.+||+||+|.++... -.-++-|-.-+...+=...
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999999999866 5667778877777554322
Q ss_pred hccCcceEEEEeec--------c-----C--CCCcc--cccccccccceEEEccCCChhhHHHHHHHHhhccccCC-cee
Q 001164 626 IRNHFSWRVKFMDV--------G-----L--GTKGV--INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGP-YMV 687 (1134)
Q Consensus 626 L~G~~~~RI~f~r~--------~-----l--Ga~G~--~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p-~~f 687 (1134)
|+-..+ .+.|... + + -.... ++=+--+..|.|.|..= +...+++++.+-..|..... .+|
T Consensus 95 L~S~~L-~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~RY 172 (309)
T PF10567_consen 95 LKSESL-TLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKRY 172 (309)
T ss_pred cCCcce-eEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCceE
Confidence 221111 4444421 0 0 00000 11111246888888766 44446666666555532221 111
Q ss_pred ----Eec---------CCCceeeEeecCHHHHHHHHHHHHHHh
Q 001164 688 ----TDL---------SCEGALLMEFRTPEEATTAMAHLRQHR 717 (1134)
Q Consensus 688 ----tfl---------sde~~a~LEFeSeEEAa~ak~~IRQ~r 717 (1134)
.++ -..+.+-|-|-+.-=|...+.+||++.
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~ 215 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNS 215 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcc
Confidence 111 236788888988888888888887763
No 233
>PF15449 Retinal: Retinal protein
Probab=24.32 E-value=1.4e+03 Score=31.48 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=13.3
Q ss_pred cccccccCcccceeeeee
Q 001164 990 QGALCKSGVHYCTIYAQR 1007 (1134)
Q Consensus 990 qGsl~KsGtnyC~~~c~~ 1007 (1134)
+..-+|-.-|.|.+||-.
T Consensus 1132 ~~~saK~~~Nt~SIFCPA 1149 (1287)
T PF15449_consen 1132 QAASAKVSGNTCSIFCPA 1149 (1287)
T ss_pred ccccccccCCccceeccc
Confidence 345567788999999954
No 234
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=24.07 E-value=54 Score=40.00 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=11.7
Q ss_pred cccCCCCCccccccccCCCCCchhhh
Q 001164 1044 FTSTPPNKREVCRLVPSSPGDHKGFQ 1069 (1134)
Q Consensus 1044 Fs~tPP~kkEVcrLvP~s~~D~k~fq 1069 (1134)
|......+..-++|++=-+....+|+
T Consensus 185 Fhl~~~~~~~~f~l~aPpi~K~~kYN 210 (465)
T PF01690_consen 185 FHLEATGDDASFFLVAPPIQKTSKYN 210 (465)
T ss_pred EEEEecCCCceEEEecCCcccccccc
Confidence 55554444444555533334443333
No 235
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=23.59 E-value=75 Score=38.65 Aligned_cols=7 Identities=29% Similarity=0.648 Sum_probs=3.6
Q ss_pred EccCCCh
Q 001164 660 VGNIPNQ 666 (1134)
Q Consensus 660 VG~iss~ 666 (1134)
|+..+..
T Consensus 43 v~~~p~~ 49 (480)
T KOG2675|consen 43 VAAVPPS 49 (480)
T ss_pred cccCchH
Confidence 5555554
No 236
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=23.58 E-value=5.2e+02 Score=35.64 Aligned_cols=9 Identities=22% Similarity=0.305 Sum_probs=4.6
Q ss_pred hhhcccCcc
Q 001164 1096 LMFILPYSQ 1104 (1134)
Q Consensus 1096 ~L~lvPeS~ 1104 (1134)
-|+++|++.
T Consensus 330 ~l~E~~~~~ 338 (1639)
T KOG0905|consen 330 ELIEVPSSS 338 (1639)
T ss_pred eeeeccccc
Confidence 355555553
No 237
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=23.35 E-value=17 Score=43.25 Aligned_cols=72 Identities=10% Similarity=-0.039 Sum_probs=56.5
Q ss_pred ecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec--cCceEEEEecCHHHHHHHHHhhccC
Q 001164 557 FDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINIIDAIRAREYIRNH 629 (1134)
Q Consensus 557 ~~g~~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~--~rgfAFVeFr~i~DAi~A~~~L~G~ 629 (1134)
|+-+.+|.-|=-.-++++|++|..++-..|+.+.|.+||.+---.++. ...|+-|+|..-.--+.|.+ ++|.
T Consensus 138 Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gr 211 (479)
T KOG4676|consen 138 LPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGR 211 (479)
T ss_pred CChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcch
Confidence 455566777777779999999999999999999999999987544443 56778899998777777744 4554
No 238
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=23.27 E-value=2.5e+02 Score=29.57 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=48.9
Q ss_pred CCCCCHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccc--------CCchHHHHHHHHHHhcc
Q 001164 37 PPPLSQDEIQSRRRNKDEIRSVYECYRRLKACIAQKDA--------RRLPELEQAYLSLITAS 91 (1134)
Q Consensus 37 ~~p~~~ee~~~~~rn~~e~~~~~~~y~~~~~~~~~~~~--------~~~~~le~~y~~li~~s 91 (1134)
||--|+++|.+-+|.-+.|..+.|...-||..|..++- |.|-+|-|.-.+||.+=
T Consensus 27 p~tysp~~l~~i~~~~~~i~~~~~r~~eLk~lI~kk~W~~vrn~irgp~g~Lr~dl~~l~~sl 89 (142)
T TIGR03042 27 PPTYSPAQLAQIQRQAEGIEAAKDRLPELASLVAKEDWVFTRNLIHGPMGEVRREMTYLNQSL 89 (142)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcchHHHHHHHhccHHHHHHHHHHHHHcc
Confidence 55678999999999999999999999999999999985 47889999999988764
No 239
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=22.89 E-value=1.4e+02 Score=25.97 Aligned_cols=51 Identities=12% Similarity=0.149 Sum_probs=32.6
Q ss_pred eEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHH
Q 001164 657 HVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAM 710 (1134)
Q Consensus 657 ~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak 710 (1134)
.|=|-+.+. ...++++.-|..||-+.. +.+-...+.+.|.|.+..+|.+|+
T Consensus 3 wI~V~Gf~~-~~~~~vl~~F~~fGeI~~--~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPP-DLAEEVLEHFASFGEIVD--IYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECc-hHHHHHHHHHHhcCCEEE--EEcCCCCcEEEEEECCHHHHHhhC
Confidence 344555553 344667776766553332 222346899999999999998763
No 240
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.42 E-value=5.5e+02 Score=30.07 Aligned_cols=8 Identities=25% Similarity=0.343 Sum_probs=4.3
Q ss_pred CCCCCCcc
Q 001164 764 GGFGSPHT 771 (1134)
Q Consensus 764 s~fGSV~R 771 (1134)
+.||+|.-
T Consensus 123 s~FGel~e 130 (338)
T KOG0917|consen 123 SVFGELTE 130 (338)
T ss_pred HHhcCCCh
Confidence 45665544
No 241
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=21.93 E-value=1.9e+02 Score=28.55 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=35.2
Q ss_pred ceEEEccCCChhhHHHHHHHHhhccccCCceeEe-cCCCceeeEeecCHHHHHHHHHHHHHH
Q 001164 656 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD-LSCEGALLMEFRTPEEATTAMAHLRQH 716 (1134)
Q Consensus 656 ~~LwVG~iss~~~keeilhELykfglk~p~~ftf-lsde~~a~LEFeSeEEAa~ak~~IRQ~ 716 (1134)
+.|.|-++....+.++|-..|..++ ++.|.+ ..+....++-|.+.+.|..+...+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g---~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFG---EVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS-----EEEEE--TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcC---CcceEEecCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 3567777888888888888887655 666644 456788889999999999998888654
No 242
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]
Probab=21.73 E-value=45 Score=40.92 Aligned_cols=56 Identities=20% Similarity=0.184 Sum_probs=49.1
Q ss_pred hhhhhhccccccccccccCCCCccccccchhhhhhhhhhhhhhccCCCceEeechhhhhccCCchHHHHh
Q 001164 147 TASACIFGLGDICRTASSEVPTSSVIRGICSAVFHNVLDFFISSFDGKDIIHTVDKEITKMLDSDEVFLG 216 (1134)
Q Consensus 147 ta~aci~gl~dic~~a~~~~~~s~~~~~ics~v~~~vl~ff~~~~~g~di~~~~~~~~~~~~d~~e~~~~ 216 (1134)
++.+|+.|||-||..+..+.|=.+++-|+-++++-|.++- -++.+|+-||.++|..
T Consensus 291 ~cnG~laGlVaiT~gc~~v~pWaAiviG~va~~~~~~~~k--------------L~~~lkvDDpl~~f~~ 346 (500)
T KOG0682|consen 291 LCNGILAGLVAITPGCGVVEPWAAIVIGAVAGLVCNAANK--------------LKERLKVDDPLDAFAV 346 (500)
T ss_pred hHHHHHHHHHhhcCCCcccCcHHHHHHhHHHHHHHHHHHH--------------HHHHhcCCcHHHHHHH
Confidence 5789999999999999999999999999999998887654 3678888999988854
No 243
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=21.57 E-value=1.8e+02 Score=34.34 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=12.0
Q ss_pred ecccccccCcccceeeeeeccCccccc
Q 001164 989 WQGALCKSGVHYCTIYAQREESDICKY 1015 (1134)
Q Consensus 989 WqGsl~KsGtnyC~~~c~~vdsdIC~~ 1015 (1134)
|-|....++...|+ ..--|||+.+
T Consensus 190 ~Pg~~~a~~~~~gs---~aQASDISEV 213 (407)
T PF04625_consen 190 WPGMPPASPAPAGS---DAQASDISEV 213 (407)
T ss_pred CCCCCCCCCCCCCc---ccccccchhe
Confidence 55655555555551 1235666543
No 244
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=20.90 E-value=3.2e+02 Score=27.47 Aligned_cols=59 Identities=14% Similarity=0.033 Sum_probs=43.0
Q ss_pred EEeccCCCccCHHHHHHHhhccC-CcceEEEec----cCceEEEEecCHHHHHHHHHhhccCcc
Q 001164 573 LWLGSFGPEASEAHIRFQIDRFG-PLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 573 LWVGnL~~~vte~dL~~~F~~yG-pLe~v~~~~----~rgfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
+-+...+.-.+-++|....+.+- .|+.+++.+ .|.-+++.|++..+|.+=.+..+|+..
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 34444455555566666555553 466777764 667899999999999999999999964
No 245
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=20.83 E-value=2.9e+02 Score=32.03 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=10.7
Q ss_pred ceecccccccCcccceeeee
Q 001164 987 YQWQGALCKSGVHYCTIYAQ 1006 (1134)
Q Consensus 987 ~qWqGsl~KsGtnyC~~~c~ 1006 (1134)
+.+.|.-.+.|-..|.+-+-
T Consensus 219 ~VkvGDsVkkGQvLavIEAM 238 (274)
T PLN02983 219 FVKVGDKVQKGQVVCIIEAM 238 (274)
T ss_pred eeCCCCEecCCCEEEEEEee
Confidence 34455556666666644443
No 246
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=20.79 E-value=2.5e+03 Score=29.76 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=12.2
Q ss_pred eeccCCCCcchhhhhhh-hhhccccccc
Q 001164 133 LINRGEDADGVAFQTAS-ACIFGLGDIC 159 (1134)
Q Consensus 133 ~~~rg~d~~gva~~ta~-aci~gl~dic 159 (1134)
+|.+||-.-||--+-++ +-+-||++++
T Consensus 604 lie~g~l~~g~l~Kkt~G~s~g~lvh~i 631 (1605)
T KOG0260|consen 604 LIEGGELLIGVLCKKTVGSSAGGLVHVI 631 (1605)
T ss_pred EEeCCceEEEEeeccccccccCceEEEe
Confidence 44555555555433222 3333455544
No 247
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=20.53 E-value=83 Score=38.30 Aligned_cols=6 Identities=33% Similarity=0.196 Sum_probs=2.4
Q ss_pred CcceEE
Q 001164 596 PLEHFF 601 (1134)
Q Consensus 596 pLe~v~ 601 (1134)
.||++.
T Consensus 17 RLE~Is 22 (480)
T KOG2675|consen 17 RLEGIS 22 (480)
T ss_pred Hhhhhh
Confidence 344444
No 248
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=20.20 E-value=1.7e+02 Score=36.85 Aligned_cols=62 Identities=16% Similarity=0.063 Sum_probs=46.8
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCcee-E---ecCCCceeeEeecCHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T---DLSCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-t---flsde~~a~LEFeSeEEAa~ak~~I 713 (1134)
++-.++|||.++++.+---++-+-|.|||+.=...+ | .-+.+|+=++...|.+||++-..||
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hL 467 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHL 467 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHh
Confidence 346899999999998777777777777765433322 3 3355888899999999999887777
Done!