Query 001164
Match_columns 1134
No_of_seqs 369 out of 378
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 14:20:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmr_A Cugbp ELAV-like family 99.8 5.3E-18 1.8E-22 163.5 15.5 139 568-714 1-157 (175)
2 1fxl_A Paraneoplastic encephal 99.8 5.6E-18 1.9E-22 161.8 15.2 137 569-714 1-151 (167)
3 3md3_A Nuclear and cytoplasmic 99.7 9.4E-18 3.2E-22 160.1 14.3 137 571-714 1-150 (166)
4 1b7f_A Protein (SXL-lethal pro 99.7 1.5E-17 5E-22 159.8 14.6 137 569-714 2-152 (168)
5 3tyt_A Heterogeneous nuclear r 99.7 4.6E-17 1.6E-21 167.4 16.8 147 569-715 3-187 (205)
6 4f02_A Polyadenylate-binding p 99.7 1.7E-17 5.8E-22 169.2 13.4 140 568-714 13-164 (213)
7 2qfj_A FBP-interacting repress 99.7 3.4E-17 1.2E-21 163.7 12.0 150 565-714 23-188 (216)
8 2g4b_A Splicing factor U2AF 65 99.7 8.1E-17 2.8E-21 155.6 13.8 139 568-714 2-157 (172)
9 2adc_A Polypyrimidine tract-bi 99.7 1.2E-16 4.2E-21 164.5 16.0 145 568-714 32-210 (229)
10 3sde_A Paraspeckle component 1 99.7 1.1E-16 3.8E-21 168.2 15.5 136 565-715 17-159 (261)
11 3pgw_A U1-A; protein-RNA compl 99.7 1.4E-16 5E-21 167.0 16.1 146 567-714 6-265 (282)
12 1qm9_A Polypyrimidine tract-bi 99.7 1.8E-16 6.2E-21 157.8 15.9 143 570-714 3-179 (198)
13 1l3k_A Heterogeneous nuclear r 99.7 1.2E-16 4.1E-21 157.5 14.3 140 568-711 11-164 (196)
14 2yh0_A Splicing factor U2AF 65 99.7 1.2E-16 4E-21 157.8 13.5 145 569-714 3-177 (198)
15 2cjk_A Nuclear polyadenylated 99.7 2.5E-16 8.5E-21 151.5 11.0 134 568-711 1-147 (167)
16 1fje_B Nucleolin RBD12, protei 99.7 4.5E-16 1.5E-20 151.5 12.8 138 568-714 11-157 (175)
17 3smz_A Protein raver-1, ribonu 99.6 8.1E-16 2.8E-20 161.5 14.6 132 567-714 19-158 (284)
18 2ghp_A U4/U6 snRNA-associated 99.6 1.6E-15 5.4E-20 159.9 13.4 132 568-714 39-180 (292)
19 3smz_A Protein raver-1, ribonu 99.6 6E-15 2E-19 154.9 15.1 152 557-714 82-247 (284)
20 4f25_A Polyadenylate-binding p 99.6 1.9E-15 6.5E-20 141.5 8.7 101 570-671 5-113 (115)
21 2ghp_A U4/U6 snRNA-associated 99.6 6.3E-15 2.1E-19 155.4 12.2 144 568-714 115-274 (292)
22 2hvz_A Splicing factor, argini 99.5 3.1E-14 1.1E-18 128.9 9.3 92 571-664 1-100 (101)
23 2cpj_A Non-POU domain-containi 99.5 2.8E-14 9.5E-19 129.1 8.9 77 563-639 8-88 (99)
24 3r27_A HnRNP L, heterogeneous 99.5 4.6E-14 1.6E-18 132.4 9.5 68 563-630 14-81 (100)
25 1wex_A Hypothetical protein (r 99.5 6.3E-14 2.1E-18 130.9 9.7 74 566-639 11-90 (104)
26 1x4d_A Matrin 3; structural ge 99.5 5.4E-14 1.8E-18 131.6 7.7 71 569-639 14-91 (102)
27 2cq1_A PTB-like protein L; RRM 99.5 1.1E-13 3.7E-18 128.8 9.7 75 565-639 10-90 (101)
28 4fxv_A ELAV-like protein 1; RN 99.5 9.4E-14 3.2E-18 127.6 8.7 74 566-639 15-98 (99)
29 2cq2_A Hypothetical protein LO 99.5 7.1E-14 2.4E-18 133.9 7.6 64 568-631 23-88 (114)
30 2ytc_A PRE-mRNA-splicing facto 99.5 1.6E-13 5.4E-18 120.2 8.9 70 568-637 10-84 (85)
31 2wbr_A GW182, gawky, LD47780P; 99.4 1.4E-13 4.6E-18 127.3 7.5 68 570-637 7-78 (89)
32 1x4f_A Matrin 3; structural ge 99.4 1.5E-13 5.1E-18 131.1 8.0 73 567-639 22-101 (112)
33 2ad9_A Polypyrimidine tract-bi 99.4 2.2E-13 7.4E-18 131.2 9.2 73 567-639 28-106 (119)
34 1why_A Hypothetical protein ri 99.4 2.5E-13 8.6E-18 122.4 9.1 72 568-639 15-92 (97)
35 1sjq_A Polypyrimidine tract-bi 99.4 1.2E-13 4.2E-18 130.4 7.1 61 569-629 15-75 (105)
36 1x5s_A Cold-inducible RNA-bind 99.4 6.3E-13 2.1E-17 120.4 11.0 78 563-640 5-92 (102)
37 2cqi_A Nucleolysin TIAR; RNA r 99.4 5.4E-13 1.8E-17 121.2 10.3 76 564-639 9-92 (103)
38 2la4_A Nuclear and cytoplasmic 99.4 2.1E-13 7.1E-18 123.5 7.4 64 569-632 26-89 (101)
39 2x1f_A MRNA 3'-END-processing 99.4 3.5E-13 1.2E-17 121.3 8.6 71 569-639 1-81 (96)
40 3mdf_A Peptidyl-prolyl CIS-tra 99.4 3.7E-13 1.3E-17 117.6 8.5 70 568-637 5-84 (85)
41 2dnz_A Probable RNA-binding pr 99.4 6.9E-13 2.4E-17 118.4 10.3 73 568-640 3-85 (95)
42 3lqv_A PRE-mRNA branch site pr 99.4 7.1E-13 2.4E-17 122.7 10.7 98 569-683 7-111 (115)
43 3md1_A Nuclear and cytoplasmic 99.4 3.9E-13 1.3E-17 117.0 8.3 70 570-639 1-80 (83)
44 3bs9_A Nucleolysin TIA-1 isofo 99.4 4.8E-13 1.7E-17 117.3 8.7 72 568-639 4-85 (87)
45 1x4g_A Nucleolysin TIAR; struc 99.4 3.9E-13 1.3E-17 123.8 8.4 73 568-640 23-99 (109)
46 2cqc_A Arginine/serine-rich sp 99.4 4.2E-13 1.4E-17 119.6 8.3 74 566-639 11-94 (95)
47 2cqb_A Peptidyl-prolyl CIS-tra 99.4 3.9E-13 1.3E-17 121.7 8.2 75 565-639 7-91 (102)
48 2ywk_A Putative RNA-binding pr 99.4 3.9E-13 1.3E-17 120.0 8.0 72 568-639 14-94 (95)
49 2dnq_A RNA-binding protein 4B; 99.4 7E-13 2.4E-17 118.0 9.6 71 568-640 6-80 (90)
50 2kvi_A Nuclear polyadenylated 99.4 5.5E-13 1.9E-17 120.5 9.0 76 563-640 3-83 (96)
51 3s8s_A Histone-lysine N-methyl 99.4 4.8E-13 1.6E-17 125.4 8.5 65 568-632 4-74 (110)
52 1whx_A Hypothetical protein ri 99.4 5.1E-13 1.7E-17 124.7 8.6 71 569-639 9-83 (111)
53 2cph_A RNA binding motif prote 99.4 7.9E-13 2.7E-17 120.4 9.6 74 567-640 12-97 (107)
54 1x5t_A Splicing factor 3B subu 99.4 4.8E-13 1.6E-17 119.7 8.0 72 568-639 3-85 (96)
55 2cpf_A RNA binding motif prote 99.4 4.5E-13 1.5E-17 120.5 7.7 73 568-640 3-88 (98)
56 2cq3_A RNA-binding protein 9; 99.4 1.3E-12 4.3E-17 118.8 10.2 74 567-640 12-93 (103)
57 2xnq_A Nuclear polyadenylated 99.4 9.9E-13 3.4E-17 119.8 9.3 72 566-639 18-94 (97)
58 1x4a_A Splicing factor, argini 99.4 1.2E-12 4.2E-17 120.3 9.8 73 568-640 20-99 (109)
59 2dgx_A KIAA0430 protein; RRM d 99.4 8.2E-13 2.8E-17 119.6 8.3 73 567-639 6-89 (96)
60 4a8x_A RNA-binding protein wit 99.4 9.4E-13 3.2E-17 115.5 8.4 71 569-639 3-84 (88)
61 2dnh_A Bruno-like 5, RNA bindi 99.4 1E-12 3.6E-17 119.5 8.9 72 568-639 13-96 (105)
62 2d9p_A Polyadenylate-binding p 99.4 1.1E-12 3.9E-17 119.1 9.2 72 568-639 13-92 (103)
63 2dgt_A RNA-binding protein 30; 99.4 1.4E-12 4.9E-17 116.4 9.5 71 568-640 8-82 (92)
64 2dnp_A RNA-binding protein 14; 99.4 1.3E-12 4.6E-17 116.2 9.2 71 568-640 7-81 (90)
65 2fy1_A RNA-binding motif prote 99.4 1.5E-12 5.1E-17 122.4 10.0 73 568-640 5-86 (116)
66 1p27_B RNA-binding protein 8A; 99.4 1.4E-12 4.8E-17 118.9 9.5 73 567-639 20-102 (106)
67 2e5h_A Zinc finger CCHC-type a 99.4 1.3E-12 4.3E-17 116.5 8.9 65 568-632 14-84 (94)
68 1u6f_A Tcubp1, RNA-binding pro 99.4 1.1E-12 3.6E-17 125.3 9.0 73 568-640 40-122 (139)
69 2dgv_A HnRNP M, heterogeneous 99.4 8.9E-13 3.1E-17 117.0 7.7 72 568-639 6-85 (92)
70 1x4e_A RNA binding motif, sing 99.4 3.9E-13 1.3E-17 118.0 5.3 65 568-632 3-73 (85)
71 2dgp_A Bruno-like 4, RNA bindi 99.4 1.1E-12 3.9E-17 119.4 8.6 72 568-639 11-95 (106)
72 2cqh_A IGF-II mRNA-binding pro 99.4 7E-13 2.4E-17 118.4 6.9 71 568-639 6-82 (93)
73 2div_A TRNA selenocysteine ass 99.4 1.4E-12 4.8E-17 117.5 8.9 65 568-632 7-78 (99)
74 1whw_A Hypothetical protein ri 99.4 1.1E-12 3.9E-17 118.0 8.3 72 568-639 6-87 (99)
75 1fjc_A Nucleolin RBD2, protein 99.4 9.6E-13 3.3E-17 117.9 7.7 83 557-639 3-90 (96)
76 2la6_A RNA-binding protein FUS 99.4 1.5E-12 5.2E-17 117.7 9.1 70 568-637 11-98 (99)
77 2err_A Ataxin-2-binding protei 99.4 1.3E-12 4.5E-17 121.2 8.7 72 568-639 27-106 (109)
78 2do0_A HnRNP M, heterogeneous 99.4 1.7E-12 5.8E-17 119.7 9.2 77 563-639 8-93 (114)
79 2jvo_A Nucleolar protein 3; nu 99.4 1.3E-12 4.5E-17 121.5 8.6 71 567-639 28-102 (108)
80 2dgo_A Cytotoxic granule-assoc 99.3 1.4E-12 4.8E-17 120.7 8.5 73 568-640 13-95 (115)
81 2cpe_A RNA-binding protein EWS 99.3 1.5E-12 5.2E-17 120.1 8.7 81 559-639 4-102 (113)
82 2do4_A Squamous cell carcinoma 99.3 1.7E-12 5.8E-17 117.4 8.7 72 568-639 15-95 (100)
83 1nu4_A U1A RNA binding domain; 99.3 1.4E-12 4.7E-17 116.9 8.0 73 567-639 5-88 (97)
84 1wf1_A RNA-binding protein RAL 99.3 1.5E-12 5.1E-17 120.1 8.3 71 567-639 24-99 (110)
85 2a3j_A U1 small nuclear ribonu 99.3 1.8E-12 6.3E-17 125.2 9.2 72 568-639 27-109 (127)
86 2dgs_A DAZ-associated protein 99.3 2.4E-12 8.1E-17 116.2 9.2 71 568-639 8-88 (99)
87 3ex7_B RNA-binding protein 8A; 99.3 2.5E-12 8.7E-17 120.8 9.7 77 564-640 16-102 (126)
88 2e5i_A Heterogeneous nuclear r 99.3 3.1E-12 1E-16 123.9 10.5 75 565-639 18-101 (124)
89 2e5j_A Methenyltetrahydrofolat 99.3 2.2E-12 7.5E-17 116.5 8.8 72 568-639 17-93 (97)
90 2dis_A Unnamed protein product 99.3 1.6E-12 5.4E-17 119.0 7.8 72 569-640 7-92 (109)
91 1oo0_B CG8781-PA, drosophila Y 99.3 2.6E-12 8.8E-17 118.1 9.1 72 568-639 24-105 (110)
92 2cq0_A Eukaryotic translation 99.3 1.5E-12 5.1E-17 118.3 7.5 72 568-639 13-94 (103)
93 2dgu_A Heterogeneous nuclear r 99.3 1.9E-12 6.4E-17 118.1 8.2 71 567-639 8-82 (103)
94 2dnm_A SRP46 splicing factor; 99.3 1.8E-12 6.2E-17 117.8 7.9 72 568-639 11-92 (103)
95 2hzc_A Splicing factor U2AF 65 99.3 1.8E-12 6.3E-17 113.7 7.6 64 568-632 4-78 (87)
96 1x4h_A RNA-binding protein 28; 99.3 2.5E-12 8.5E-17 117.9 8.7 73 567-639 12-100 (111)
97 1p1t_A Cleavage stimulation fa 99.3 1.5E-12 5E-17 118.1 7.1 72 568-639 6-87 (104)
98 2cpz_A CUG triplet repeat RNA- 99.3 2.5E-12 8.6E-17 119.2 8.6 72 568-639 23-104 (115)
99 2lxi_A RNA-binding protein 10; 99.3 1.1E-12 3.9E-17 118.4 6.1 70 570-639 1-82 (91)
100 1x5p_A Negative elongation fac 99.3 2.4E-12 8.1E-17 116.3 8.2 70 568-639 13-86 (97)
101 1x5u_A Splicing factor 3B subu 99.3 3.8E-12 1.3E-16 115.8 9.6 72 568-639 13-94 (105)
102 2cpd_A Apobec-1 stimulating pr 99.3 3.2E-12 1.1E-16 115.6 9.0 73 565-639 10-88 (99)
103 1x5o_A RNA binding motif, sing 99.3 3.1E-12 1.1E-16 118.2 9.0 64 568-631 23-91 (114)
104 2khc_A Testis-specific RNP-typ 99.3 1.7E-12 5.8E-17 120.7 7.2 65 568-632 38-108 (118)
105 2krb_A Eukaryotic translation 99.3 1.7E-12 5.9E-17 113.6 6.8 62 570-631 1-72 (81)
106 3ulh_A THO complex subunit 4; 99.3 3E-12 1E-16 116.8 8.7 71 567-637 26-105 (107)
107 2ek1_A RNA-binding protein 12; 99.3 1.3E-12 4.5E-17 116.6 5.9 70 569-638 14-93 (95)
108 2kt5_A RNA and export factor-b 99.3 5.7E-12 1.9E-16 118.5 10.1 74 566-639 31-113 (124)
109 2cpi_A CCR4-NOT transcription 99.3 2E-12 7E-17 120.0 6.9 71 569-639 14-100 (111)
110 3zzy_A Polypyrimidine tract-bi 99.3 3.5E-12 1.2E-16 124.8 8.8 69 571-639 29-105 (130)
111 2jrs_A RNA-binding protein 39; 99.3 3.3E-12 1.1E-16 118.7 7.9 71 568-638 24-104 (108)
112 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.3 3.9E-12 1.3E-16 120.6 8.5 66 567-632 60-131 (140)
113 2i2y_A Fusion protein consists 99.3 4.9E-12 1.7E-16 122.6 9.3 74 566-639 69-147 (150)
114 2dhg_A TRNA selenocysteine ass 99.3 2.4E-12 8.2E-17 116.9 6.7 72 568-639 7-89 (104)
115 1sjr_A Polypyrimidine tract-bi 99.3 3.1E-12 1.1E-16 129.7 8.2 70 570-639 46-123 (164)
116 3ucg_A Polyadenylate-binding p 99.3 3.7E-12 1.3E-16 112.1 7.4 70 569-639 5-84 (89)
117 1x4c_A Splicing factor, argini 99.3 6E-12 2.1E-16 116.1 9.1 63 568-631 13-75 (108)
118 2kxn_B Transformer-2 protein h 99.3 4E-12 1.4E-16 122.1 7.2 71 568-638 44-124 (129)
119 1wi8_A EIF-4B, eukaryotic tran 99.3 6.3E-12 2.2E-16 114.6 8.1 71 568-640 13-94 (104)
120 2cqd_A RNA-binding region cont 99.3 8.8E-12 3E-16 115.8 9.2 71 568-639 15-95 (116)
121 3tht_A Alkylated DNA repair pr 99.3 4.8E-12 1.6E-16 141.2 8.6 65 567-631 15-81 (345)
122 1wg1_A KIAA1579 protein, homol 99.3 6.7E-12 2.3E-16 111.7 7.6 70 569-639 4-77 (88)
123 2lkz_A RNA-binding protein 5; 99.3 5.6E-12 1.9E-16 116.0 7.3 61 570-630 9-77 (95)
124 3p5t_L Cleavage and polyadenyl 99.3 4.4E-12 1.5E-16 113.3 6.1 62 571-632 2-71 (90)
125 2cpx_A Hypothetical protein FL 99.3 7.4E-12 2.5E-16 115.6 7.7 72 568-639 23-104 (115)
126 1h2v_Z 20 kDa nuclear CAP bind 99.3 1.2E-11 4.3E-16 120.5 9.6 76 564-639 33-118 (156)
127 2jvr_A Nucleolar protein 3; RN 99.3 7.4E-12 2.5E-16 118.6 7.7 64 569-632 27-93 (111)
128 2cqp_A RNA-binding protein 12; 99.3 6.5E-12 2.2E-16 112.9 6.9 70 568-637 13-92 (98)
129 2bz2_A Negative elongation fac 99.2 1.3E-11 4.4E-16 117.6 9.0 70 568-639 37-110 (121)
130 3ns6_A Eukaryotic translation 99.2 6.3E-12 2.2E-16 114.9 6.6 63 569-631 5-79 (100)
131 2cq4_A RNA binding motif prote 99.2 6.5E-12 2.2E-16 116.3 6.4 70 568-638 23-102 (114)
132 1s79_A Lupus LA protein; RRM, 99.2 1.2E-11 4.2E-16 114.8 8.3 63 569-632 10-77 (103)
133 2jwn_A Embryonic polyadenylate 99.2 7.3E-12 2.5E-16 117.4 6.8 71 568-639 34-114 (124)
134 2ki2_A SS-DNA binding protein 99.2 5.2E-12 1.8E-16 111.9 5.4 68 571-639 2-79 (90)
135 2nlw_A Eukaryotic translation 99.2 8.1E-12 2.8E-16 114.9 6.7 65 568-632 13-87 (105)
136 2dng_A Eukaryotic translation 99.2 1.6E-11 5.5E-16 111.7 8.6 70 568-639 13-92 (103)
137 2m2b_A RNA-binding protein 10; 99.2 7.2E-12 2.5E-16 119.5 6.4 71 568-639 21-107 (131)
138 2kn4_A Immunoglobulin G-bindin 99.2 1.9E-11 6.6E-16 118.7 9.3 74 566-639 66-149 (158)
139 2j76_E EIF-4B, EIF4B, eukaryot 99.2 6.8E-12 2.3E-16 114.3 5.6 71 566-638 15-96 (100)
140 2rs2_A Musashi-1, RNA-binding 99.2 1.4E-11 4.8E-16 114.5 7.8 77 562-639 17-103 (109)
141 1fj7_A Nucleolin RBD1, protein 99.2 2.6E-11 9E-16 109.7 9.3 73 566-639 13-94 (101)
142 3egn_A RNA-binding protein 40; 99.2 1E-11 3.5E-16 119.5 6.9 72 568-639 43-129 (143)
143 3s7r_A Heterogeneous nuclear r 99.2 1.8E-11 6.2E-16 107.8 7.8 63 568-631 9-77 (87)
144 2fc9_A NCL protein; structure 99.2 1.2E-11 4.2E-16 111.9 6.7 72 568-639 13-90 (101)
145 3d2w_A TAR DNA-binding protein 99.2 2.1E-11 7E-16 109.9 8.1 59 568-630 9-68 (89)
146 3n9u_C Cleavage and polyadenyl 99.2 1.6E-11 5.5E-16 121.9 8.1 70 569-638 54-135 (156)
147 1uaw_A Mouse-musashi-1; RNP-ty 99.2 1.5E-11 5.1E-16 105.5 6.8 60 571-631 1-66 (77)
148 2mss_A Protein (musashi1); RNA 99.2 1.5E-11 5.1E-16 105.5 6.6 60 572-632 1-66 (75)
149 3u1l_A PRE-mRNA-splicing facto 99.2 1.7E-11 6E-16 130.7 8.4 64 568-631 132-204 (240)
150 3nmr_A Cugbp ELAV-like family 99.2 2.7E-11 9.2E-16 116.7 8.9 63 569-631 94-161 (175)
151 2lea_A Serine/arginine-rich sp 99.2 1.6E-11 5.6E-16 118.6 7.3 72 568-639 45-126 (135)
152 2dh8_A DAZ-associated protein 99.2 1.2E-11 4.2E-16 112.7 5.9 66 566-632 12-83 (105)
153 3beg_B Splicing factor, argini 99.2 1.7E-11 5.7E-16 114.9 7.0 63 569-632 15-77 (115)
154 1rk8_A CG8781-PA, CG8781-PA pr 99.2 2.6E-11 9E-16 119.9 8.6 72 568-639 70-151 (165)
155 1x4b_A Heterogeneous nuclear r 99.2 2.9E-11 1E-15 112.2 8.0 71 568-639 25-105 (116)
156 2cpy_A RNA-binding protein 12; 99.2 3.6E-11 1.2E-15 112.1 8.3 67 565-632 10-82 (114)
157 2e5g_A U6 snRNA-specific termi 99.2 2.6E-11 8.8E-16 108.9 6.8 63 569-632 7-70 (94)
158 2e44_A Insulin-like growth fac 99.2 5.7E-11 2E-15 106.4 8.8 72 568-639 13-91 (96)
159 2dnl_A Cytoplasmic polyadenyla 99.2 1.9E-11 6.5E-16 114.0 5.6 61 568-629 6-78 (114)
160 2cqg_A TDP-43, TAR DNA-binding 99.2 4.5E-11 1.5E-15 108.6 7.9 71 567-639 12-92 (103)
161 3md3_A Nuclear and cytoplasmic 99.2 5.1E-11 1.7E-15 113.5 8.4 69 569-637 86-164 (166)
162 2fc8_A NCL protein; structure 99.2 6.1E-11 2.1E-15 107.3 8.5 72 568-639 13-91 (102)
163 1wf0_A TDP-43, TAR DNA-binding 99.2 2.7E-11 9.4E-16 107.3 5.8 55 568-622 3-58 (88)
164 1qm9_A Polypyrimidine tract-bi 99.1 8.3E-11 2.9E-15 117.0 9.8 75 565-639 115-196 (198)
165 1iqt_A AUF1, heterogeneous nuc 99.1 3.2E-11 1.1E-15 103.2 5.8 59 572-631 1-65 (75)
166 1wez_A HnRNP H', FTP-3, hetero 99.1 9.8E-11 3.4E-15 108.1 9.5 64 567-632 12-80 (102)
167 2dgw_A Probable RNA-binding pr 99.1 1.3E-10 4.3E-15 103.4 8.8 69 568-638 8-85 (91)
168 2lcw_A RNA-binding protein FUS 98.7 5.5E-12 1.9E-16 117.4 0.0 73 568-640 5-95 (116)
169 2xs2_A Deleted in azoospermia- 99.1 1.9E-11 6.4E-16 110.9 3.5 62 569-630 8-77 (102)
170 2qfj_A FBP-interacting repress 99.1 9.6E-11 3.3E-15 117.1 8.9 73 567-639 122-204 (216)
171 2f3j_A RNA and export factor b 99.1 1.2E-10 4.2E-15 117.6 9.8 73 567-639 85-166 (177)
172 1fxl_A Paraneoplastic encephal 99.1 1.2E-10 3.9E-15 111.2 9.0 64 569-632 87-156 (167)
173 1wel_A RNA-binding protein 12; 99.1 5.4E-11 1.8E-15 112.3 6.3 64 568-632 23-92 (124)
174 2adc_A Polypyrimidine tract-bi 99.1 1.3E-10 4.5E-15 119.7 9.5 75 565-639 146-227 (229)
175 3pgw_A U1-A; protein-RNA compl 99.1 1.3E-10 4.3E-15 122.0 9.4 72 566-637 203-280 (282)
176 2g4b_A Splicing factor U2AF 65 99.1 1E-10 3.5E-15 112.9 7.7 63 570-632 94-162 (172)
177 3q2s_C Cleavage and polyadenyl 99.1 1E-10 3.4E-15 122.7 7.3 64 569-632 67-138 (229)
178 1b7f_A Protein (SXL-lethal pro 99.1 2.2E-10 7.4E-15 110.0 9.0 63 569-631 88-156 (168)
179 2yh0_A Splicing factor U2AF 65 99.1 1.5E-10 5.2E-15 114.1 7.9 72 568-639 112-193 (198)
180 4f02_A Polyadenylate-binding p 99.1 1.8E-10 6E-15 117.5 8.4 65 568-632 101-169 (213)
181 2db1_A Heterogeneous nuclear r 99.1 1.5E-10 5.1E-15 109.1 7.2 64 568-632 15-86 (118)
182 1wg5_A Heterogeneous nuclear r 99.1 3.3E-10 1.1E-14 104.0 8.7 64 568-632 13-82 (104)
183 2hgl_A HNRPF protein, heteroge 99.0 2.3E-10 7.7E-15 112.0 7.3 64 568-632 42-113 (136)
184 3tyt_A Heterogeneous nuclear r 99.0 2.7E-10 9.2E-15 117.2 8.1 65 566-630 119-189 (205)
185 2lmi_A GRSF-1, G-rich sequence 99.0 1.8E-10 6.1E-15 106.3 6.1 64 568-632 9-80 (107)
186 2pe8_A Splicing factor 45; RRM 99.0 4.8E-10 1.7E-14 104.9 9.0 71 568-638 6-92 (105)
187 2cjk_A Nuclear polyadenylated 99.0 2.8E-10 9.4E-15 109.4 7.0 71 568-639 85-165 (167)
188 3pgw_S U1-70K; protein-RNA com 99.0 3.4E-10 1.2E-14 129.3 8.5 72 568-639 100-181 (437)
189 1l3k_A Heterogeneous nuclear r 99.0 6.7E-10 2.3E-14 109.4 8.2 70 569-639 103-182 (196)
190 2dit_A HIV TAT specific factor 99.0 1.2E-09 4.1E-14 101.7 8.9 72 568-639 13-101 (112)
191 1fje_B Nucleolin RBD12, protei 99.0 5.2E-10 1.8E-14 108.7 6.8 70 569-638 98-172 (175)
192 2diu_A KIAA0430 protein; struc 99.0 5.9E-10 2E-14 104.4 6.4 69 567-639 5-83 (96)
193 3sde_A Paraspeckle component 1 99.0 1.1E-09 3.6E-14 115.3 8.8 83 557-639 83-178 (261)
194 2dnn_A RNA-binding protein 12; 98.9 1E-09 3.5E-14 103.4 7.5 63 568-632 14-81 (109)
195 2hgn_A Heterogeneous nuclear r 98.9 5.2E-10 1.8E-14 109.9 5.3 63 568-632 44-111 (139)
196 2dha_A FLJ20171 protein; RRM d 98.9 8.9E-10 3E-14 106.1 6.0 62 569-631 22-92 (123)
197 2voo_A Lupus LA protein; RNA-b 98.8 3.7E-09 1.3E-13 108.0 7.3 60 569-628 108-172 (193)
198 2hgm_A HNRPF protein, heteroge 98.8 5.9E-09 2E-13 101.1 7.0 62 568-631 40-108 (126)
199 3v4m_A Splicing factor U2AF 65 98.8 9.6E-09 3.3E-13 96.0 7.8 72 568-639 3-96 (105)
200 3ue2_A Poly(U)-binding-splicin 98.7 1.4E-08 4.7E-13 97.3 7.9 71 568-638 18-107 (118)
201 2d9o_A DNAJ (HSP40) homolog, s 98.7 2.9E-08 9.8E-13 92.7 9.3 60 580-639 27-89 (100)
202 2j8a_A Histone-lysine N-methyl 98.7 1.4E-08 4.9E-13 100.2 6.4 69 571-639 3-95 (136)
203 1jmt_A Splicing factor U2AF 35 98.7 7.4E-09 2.5E-13 96.4 3.5 58 575-632 20-94 (104)
204 3s6e_A RNA-binding protein 39; 98.6 6.3E-08 2.2E-12 92.3 9.1 70 569-638 6-91 (114)
205 1owx_A Lupus LA protein, SS-B, 98.4 4.2E-07 1.4E-11 88.3 8.5 62 566-627 14-77 (121)
206 2kn4_A Immunoglobulin G-bindin 98.4 6.9E-07 2.4E-11 86.7 9.2 111 604-714 11-133 (158)
207 2i2y_A Fusion protein consists 98.3 6.3E-07 2.1E-11 86.8 6.1 108 605-714 12-131 (150)
208 3dxb_A Thioredoxin N-terminall 97.9 9.7E-06 3.3E-10 83.1 6.9 57 582-638 141-211 (222)
209 2dnr_A Synaptojanin-1; RRM dom 97.6 0.00013 4.4E-09 68.0 7.6 66 570-638 7-84 (91)
210 2lea_A Serine/arginine-rich sp 97.5 6.1E-05 2.1E-09 72.7 4.9 96 608-713 6-109 (135)
211 3pgw_S U1-70K; protein-RNA com 97.3 6.3E-05 2.2E-09 86.1 2.3 124 586-714 8-165 (437)
212 1ufw_A Synaptojanin 2; RNP dom 97.3 0.00037 1.3E-08 65.5 6.7 62 568-632 13-83 (95)
213 1why_A Hypothetical protein ri 97.2 0.00069 2.4E-08 60.7 7.3 61 652-714 14-74 (97)
214 1rk8_A CG8781-PA, CG8781-PA pr 97.2 0.00048 1.7E-08 67.9 6.4 104 611-714 11-135 (165)
215 3r27_A HnRNP L, heterogeneous 97.1 0.00073 2.5E-08 63.5 6.9 62 652-715 18-79 (100)
216 1wex_A Hypothetical protein (r 97.1 0.001 3.5E-08 62.0 7.6 61 653-715 13-73 (104)
217 1x4d_A Matrin 3; structural ge 97.1 0.00059 2E-08 63.8 5.7 61 653-715 13-74 (102)
218 2e5h_A Zinc finger CCHC-type a 97.0 0.00085 2.9E-08 59.4 6.1 67 648-714 9-79 (94)
219 2ad9_A Polypyrimidine tract-bi 97.0 0.00088 3E-08 64.6 6.4 61 653-715 29-89 (119)
220 2cq1_A PTB-like protein L; RRM 97.0 0.00084 2.9E-08 62.4 5.8 61 652-714 12-72 (101)
221 2cpj_A Non-POU domain-containi 96.9 0.0014 4.9E-08 58.8 6.9 60 653-714 13-72 (99)
222 1x4a_A Splicing factor, argini 96.9 0.0017 5.7E-08 59.4 7.3 63 652-714 19-82 (109)
223 2e5j_A Methenyltetrahydrofolat 96.9 0.0019 6.6E-08 57.9 7.6 62 652-714 16-77 (97)
224 2do0_A HnRNP M, heterogeneous 96.9 0.0015 5.3E-08 59.8 6.9 62 653-714 13-77 (114)
225 2x1f_A MRNA 3'-END-processing 96.9 0.0012 4.1E-08 59.1 5.9 61 654-714 1-65 (96)
226 2dnq_A RNA-binding protein 4B; 96.9 0.0015 5.2E-08 57.7 6.5 59 652-714 5-63 (90)
227 1sjq_A Polypyrimidine tract-bi 96.9 0.0014 4.8E-08 62.0 6.5 60 653-714 14-73 (105)
228 2hzc_A Splicing factor U2AF 65 96.9 0.0014 4.8E-08 57.0 6.1 62 652-714 3-73 (87)
229 3mdf_A Peptidyl-prolyl CIS-tra 96.9 0.00091 3.1E-08 58.0 4.8 63 652-714 4-70 (85)
230 2dnz_A Probable RNA-binding pr 96.8 0.0018 6.2E-08 57.3 6.6 62 653-714 3-68 (95)
231 2cqh_A IGF-II mRNA-binding pro 96.8 0.0017 5.7E-08 57.6 6.3 60 653-715 6-66 (93)
232 1x4e_A RNA binding motif, sing 96.8 0.0014 4.9E-08 57.0 5.8 65 653-717 3-71 (85)
233 2cq3_A RNA-binding protein 9; 96.8 0.0025 8.5E-08 57.6 7.5 63 652-714 12-76 (103)
234 2cqc_A Arginine/serine-rich sp 96.8 0.0025 8.7E-08 56.3 7.2 63 652-714 12-78 (95)
235 2dgu_A Heterogeneous nuclear r 96.8 0.0016 5.5E-08 59.1 6.1 59 652-714 8-66 (103)
236 2la4_A Nuclear and cytoplasmic 96.8 0.0022 7.4E-08 57.7 6.7 59 654-714 26-84 (101)
237 1x4f_A Matrin 3; structural ge 96.7 0.0013 4.6E-08 62.7 5.2 61 653-715 23-84 (112)
238 2cqi_A Nucleolysin TIAR; RNA r 96.7 0.0032 1.1E-07 56.8 7.4 62 653-714 13-76 (103)
239 4a8x_A RNA-binding protein wit 96.7 0.0018 6.2E-08 56.3 5.5 61 654-714 3-68 (88)
240 2div_A TRNA selenocysteine ass 96.7 0.0022 7.5E-08 57.4 6.2 63 652-714 6-73 (99)
241 1whw_A Hypothetical protein ri 96.7 0.0018 6.3E-08 57.9 5.6 63 652-714 5-71 (99)
242 2dnh_A Bruno-like 5, RNA bindi 96.7 0.0023 7.8E-08 57.9 6.2 62 653-714 13-77 (105)
243 2jvo_A Nucleolar protein 3; nu 96.7 0.0024 8.3E-08 59.2 6.4 58 653-714 29-86 (108)
244 3bs9_A Nucleolysin TIA-1 isofo 96.6 0.0025 8.5E-08 55.5 5.9 62 653-714 4-69 (87)
245 2hgl_A HNRPF protein, heteroge 96.6 0.0026 9.1E-08 62.1 6.7 100 606-711 1-106 (136)
246 3md1_A Nuclear and cytoplasmic 96.6 0.0027 9.2E-08 54.8 6.0 60 655-714 1-64 (83)
247 1p27_B RNA-binding protein 8A; 96.6 0.0029 9.8E-08 57.3 6.4 62 654-715 22-87 (106)
248 2cph_A RNA binding motif prote 96.6 0.004 1.4E-07 56.3 7.3 59 653-713 13-78 (107)
249 2kvi_A Nuclear polyadenylated 96.6 0.0032 1.1E-07 56.5 6.6 58 653-714 8-66 (96)
250 2lkz_A RNA-binding protein 5; 96.6 0.0031 1E-07 57.9 6.6 64 652-715 6-75 (95)
251 1x5s_A Cold-inducible RNA-bind 96.6 0.0036 1.2E-07 56.3 7.0 63 652-714 9-75 (102)
252 1x5t_A Splicing factor 3B subu 96.6 0.0027 9.3E-08 56.3 6.0 62 653-714 3-69 (96)
253 2dgv_A HnRNP M, heterogeneous 96.6 0.0029 1E-07 55.7 6.2 63 652-714 5-69 (92)
254 2ytc_A PRE-mRNA-splicing facto 96.6 0.0019 6.3E-08 56.2 4.9 59 653-713 10-68 (85)
255 2cqb_A Peptidyl-prolyl CIS-tra 96.6 0.0027 9.2E-08 57.1 6.1 63 652-714 9-75 (102)
256 2dgp_A Bruno-like 4, RNA bindi 96.6 0.0028 9.6E-08 57.4 6.2 64 652-715 10-77 (106)
257 1x4c_A Splicing factor, argini 96.6 0.0031 1E-07 57.9 6.5 59 653-714 13-71 (108)
258 2cpf_A RNA binding motif prote 96.6 0.0019 6.6E-08 57.6 5.0 62 653-714 3-71 (98)
259 2ywk_A Putative RNA-binding pr 96.6 0.0032 1.1E-07 55.8 6.4 63 652-714 13-78 (95)
260 2cpe_A RNA-binding protein EWS 96.6 0.0046 1.6E-07 56.7 7.6 63 652-714 12-86 (113)
261 2dgt_A RNA-binding protein 30; 96.6 0.003 1E-07 56.0 6.2 59 652-714 7-65 (92)
262 2ek1_A RNA-binding protein 12; 96.6 0.0039 1.3E-07 55.2 6.8 62 653-714 13-78 (95)
263 1nu4_A U1A RNA binding domain; 96.6 0.0044 1.5E-07 55.1 7.1 62 653-714 6-72 (97)
264 4f25_A Polyadenylate-binding p 96.6 0.003 1E-07 58.8 6.2 60 655-714 5-66 (115)
265 1x4g_A Nucleolysin TIAR; struc 96.6 0.0031 1.1E-07 57.7 6.2 59 654-714 24-82 (109)
266 2la6_A RNA-binding protein FUS 96.5 0.0035 1.2E-07 56.3 6.4 62 653-714 11-84 (99)
267 3lqv_A PRE-mRNA branch site pr 96.5 0.0028 9.5E-08 58.3 5.8 62 653-714 6-68 (115)
268 2d9p_A Polyadenylate-binding p 96.5 0.002 6.9E-08 58.2 4.7 62 653-714 13-76 (103)
269 2hvz_A Splicing factor, argini 96.5 0.0041 1.4E-07 55.9 6.7 58 656-715 1-59 (101)
270 2xnq_A Nuclear polyadenylated 96.5 0.0035 1.2E-07 56.8 6.2 58 653-714 20-78 (97)
271 2dgx_A KIAA0430 protein; RRM d 96.5 0.0038 1.3E-07 56.2 6.3 62 653-714 7-73 (96)
272 2fc9_A NCL protein; structure 96.5 0.0028 9.7E-08 57.0 5.5 63 652-714 12-74 (101)
273 2dnl_A Cytoplasmic polyadenyla 96.5 0.0019 6.6E-08 59.9 4.4 62 652-713 5-72 (114)
274 2dnp_A RNA-binding protein 14; 96.5 0.003 1E-07 55.8 5.4 58 653-714 7-64 (90)
275 2dgo_A Cytotoxic granule-assoc 96.5 0.0032 1.1E-07 57.9 5.8 62 653-714 13-78 (115)
276 1x4h_A RNA-binding protein 28; 96.5 0.0033 1.1E-07 57.2 5.8 62 653-714 13-78 (111)
277 2cq2_A Hypothetical protein LO 96.5 0.0023 7.9E-08 61.4 4.9 61 653-715 23-85 (114)
278 2cpx_A Hypothetical protein FL 96.5 0.0031 1.1E-07 57.9 5.6 62 653-714 23-88 (115)
279 1wf1_A RNA-binding protein RAL 96.5 0.0034 1.2E-07 57.6 5.8 57 654-714 26-83 (110)
280 2dnm_A SRP46 splicing factor; 96.5 0.0025 8.6E-08 57.5 4.9 62 653-714 11-76 (103)
281 2lxi_A RNA-binding protein 10; 96.5 0.0033 1.1E-07 56.4 5.7 59 655-713 1-64 (91)
282 2dis_A Unnamed protein product 96.4 0.0029 1E-07 57.5 5.1 61 653-713 6-72 (109)
283 1wey_A Calcipressin 1; structu 96.4 0.0048 1.6E-07 58.9 6.7 70 570-639 5-83 (104)
284 2cpz_A CUG triplet repeat RNA- 96.4 0.0055 1.9E-07 56.5 6.9 61 654-714 24-88 (115)
285 2dgs_A DAZ-associated protein 96.4 0.0044 1.5E-07 55.5 6.0 61 652-713 7-71 (99)
286 2e44_A Insulin-like growth fac 96.4 0.0047 1.6E-07 54.9 6.1 62 654-715 14-76 (96)
287 2cpi_A CCR4-NOT transcription 96.4 0.0029 1E-07 58.4 4.9 64 651-714 11-84 (111)
288 2cpd_A Apobec-1 stimulating pr 96.4 0.0044 1.5E-07 55.6 5.9 59 653-714 13-72 (99)
289 2err_A Ataxin-2-binding protei 96.4 0.0048 1.7E-07 56.9 6.3 63 652-714 26-90 (109)
290 2cqp_A RNA-binding protein 12; 96.4 0.0075 2.6E-07 53.8 7.4 63 652-714 12-78 (98)
291 1p1t_A Cleavage stimulation fa 96.4 0.0038 1.3E-07 56.2 5.4 62 653-714 6-71 (104)
292 2kt5_A RNA and export factor-b 96.4 0.0069 2.4E-07 56.7 7.3 64 652-715 32-98 (124)
293 3ulh_A THO complex subunit 4; 96.4 0.0045 1.5E-07 56.1 5.9 63 652-714 26-91 (107)
294 1whx_A Hypothetical protein ri 96.4 0.0047 1.6E-07 57.4 6.2 59 654-714 9-67 (111)
295 2cq0_A Eukaryotic translation 96.3 0.0034 1.2E-07 56.6 5.1 62 653-714 13-78 (103)
296 3s8s_A Histone-lysine N-methyl 96.3 0.0046 1.6E-07 57.8 6.0 62 653-714 4-69 (110)
297 2do4_A Squamous cell carcinoma 96.3 0.006 2E-07 54.8 6.6 62 653-714 15-79 (100)
298 2cqg_A TDP-43, TAR DNA-binding 96.3 0.007 2.4E-07 54.6 7.0 61 652-712 12-76 (103)
299 2ku7_A MLL1 PHD3-CYP33 RRM chi 96.3 0.0055 1.9E-07 57.7 6.3 63 652-714 60-126 (140)
300 1u6f_A Tcubp1, RNA-binding pro 96.3 0.0039 1.3E-07 59.2 5.4 62 653-714 40-105 (139)
301 1x5u_A Splicing factor 3B subu 96.3 0.0042 1.4E-07 56.1 5.1 62 653-714 13-78 (105)
302 2z73_A Rhodopsin; visual pigme 96.2 0.00073 2.5E-08 74.4 0.0 8 347-354 132-139 (448)
303 4fxv_A ELAV-like protein 1; RN 96.2 0.0062 2.1E-07 55.7 6.2 60 655-714 19-82 (99)
304 1oo0_B CG8781-PA, drosophila Y 96.2 0.0061 2.1E-07 55.6 6.1 62 653-714 24-89 (110)
305 3ex7_B RNA-binding protein 8A; 96.2 0.0057 2E-07 57.1 6.1 62 653-714 20-85 (126)
306 2cqd_A RNA-binding region cont 96.2 0.0069 2.3E-07 55.9 6.5 62 652-713 14-79 (116)
307 1wf0_A TDP-43, TAR DNA-binding 96.2 0.0033 1.1E-07 55.3 4.1 55 653-708 3-57 (88)
308 2fy1_A RNA-binding motif prote 96.2 0.0064 2.2E-07 56.9 6.1 61 653-713 5-68 (116)
309 2dh8_A DAZ-associated protein 96.2 0.0075 2.5E-07 54.6 6.3 61 652-712 13-77 (105)
310 3beg_B Splicing factor, argini 96.2 0.0037 1.3E-07 58.3 4.4 58 654-714 15-72 (115)
311 2kxn_B Transformer-2 protein h 96.2 0.0062 2.1E-07 58.3 6.0 62 653-714 44-109 (129)
312 2jrs_A RNA-binding protein 39; 96.1 0.007 2.4E-07 56.0 6.1 62 653-714 24-89 (108)
313 3s7r_A Heterogeneous nuclear r 96.1 0.0066 2.3E-07 53.0 5.5 60 653-712 9-72 (87)
314 2a3j_A U1 small nuclear ribonu 96.1 0.0071 2.4E-07 58.4 6.2 62 653-714 27-93 (127)
315 1fjc_A Nucleolin RBD2, protein 96.1 0.0052 1.8E-07 54.6 4.9 62 652-714 13-74 (96)
316 2dhg_A TRNA selenocysteine ass 96.1 0.0058 2E-07 55.1 5.2 62 653-714 7-72 (104)
317 2khc_A Testis-specific RNP-typ 96.1 0.0045 1.5E-07 57.2 4.4 60 654-713 39-102 (118)
318 1wg1_A KIAA1579 protein, homol 96.0 0.0078 2.7E-07 53.1 5.6 58 654-714 4-61 (88)
319 1uaw_A Mouse-musashi-1; RNP-ty 96.0 0.0055 1.9E-07 52.1 4.5 59 656-714 1-63 (77)
320 2e5g_A U6 snRNA-specific termi 96.0 0.011 3.6E-07 52.8 6.3 59 653-713 6-64 (94)
321 1fj7_A Nucleolin RBD1, protein 96.0 0.0076 2.6E-07 54.2 5.4 61 653-714 15-78 (101)
322 2krb_A Eukaryotic translation 96.0 0.0053 1.8E-07 53.3 4.1 59 655-713 1-67 (81)
323 3ns6_A Eukaryotic translation 96.0 0.011 3.9E-07 53.6 6.5 62 653-714 4-75 (100)
324 1wi8_A EIF-4B, eukaryotic tran 95.9 0.0057 1.9E-07 55.4 4.4 61 652-714 12-77 (104)
325 1h2v_Z 20 kDa nuclear CAP bind 95.9 0.0082 2.8E-07 58.3 5.8 62 653-714 37-102 (156)
326 2jvr_A Nucleolar protein 3; RN 95.9 0.0078 2.7E-07 56.9 5.4 62 653-714 26-88 (111)
327 3ucg_A Polyadenylate-binding p 95.9 0.0075 2.6E-07 52.6 4.8 60 653-713 4-67 (89)
328 2hgn_A Heterogeneous nuclear r 95.9 0.0041 1.4E-07 61.1 3.3 98 606-710 1-103 (139)
329 3d2w_A TAR DNA-binding protein 95.8 0.0085 2.9E-07 53.7 5.0 57 650-707 6-62 (89)
330 2cq4_A RNA binding motif prote 95.8 0.0073 2.5E-07 55.6 4.6 60 654-714 24-87 (114)
331 2rs2_A Musashi-1, RNA-binding 95.8 0.0096 3.3E-07 55.0 5.3 60 654-713 24-87 (109)
332 2fc8_A NCL protein; structure 95.8 0.0097 3.3E-07 53.5 5.2 59 653-714 13-75 (102)
333 1x5o_A RNA binding motif, sing 95.8 0.01 3.6E-07 54.4 5.5 62 653-714 23-87 (114)
334 3egn_A RNA-binding protein 40; 95.8 0.014 4.6E-07 56.0 6.4 63 652-714 42-113 (143)
335 3p5t_L Cleavage and polyadenyl 95.7 0.011 3.7E-07 52.4 5.2 60 656-715 2-67 (90)
336 1x4b_A Heterogeneous nuclear r 95.7 0.012 4E-07 54.3 5.7 59 654-712 26-88 (116)
337 2m2b_A RNA-binding protein 10; 95.7 0.011 3.9E-07 56.0 5.7 62 653-715 21-88 (131)
338 1s79_A Lupus LA protein; RRM, 95.7 0.018 6.2E-07 53.2 6.8 60 652-711 8-70 (103)
339 2dng_A Eukaryotic translation 95.6 0.0091 3.1E-07 54.0 4.5 60 652-713 12-75 (103)
340 2wbr_A GW182, gawky, LD47780P; 95.6 0.017 5.9E-07 53.6 6.2 60 654-715 6-65 (89)
341 2db1_A Heterogeneous nuclear r 95.6 0.018 6.3E-07 54.0 6.3 60 652-711 14-79 (118)
342 3u1l_A PRE-mRNA-splicing facto 95.5 0.016 5.4E-07 62.1 6.3 61 653-715 132-201 (240)
343 2mss_A Protein (musashi1); RNA 95.4 0.02 7E-07 48.5 5.5 55 657-711 1-59 (75)
344 2j76_E EIF-4B, EIF4B, eukaryot 95.4 0.0074 2.5E-07 54.6 2.8 59 653-713 17-80 (100)
345 2cpy_A RNA-binding protein 12; 95.3 0.018 6.2E-07 53.4 5.4 59 653-711 13-75 (114)
346 1uw4_A UPF3X; nonsense mediate 95.3 0.044 1.5E-06 51.0 7.8 60 571-630 2-69 (91)
347 1sjr_A Polypyrimidine tract-bi 95.3 0.019 6.4E-07 58.5 5.8 60 654-713 45-104 (164)
348 3tht_A Alkylated DNA repair pr 95.3 0.014 4.9E-07 65.5 5.4 62 652-715 15-78 (345)
349 3n9u_C Cleavage and polyadenyl 95.3 0.018 6E-07 57.2 5.4 61 654-714 54-120 (156)
350 2f3j_A RNA and export factor b 95.1 0.025 8.4E-07 57.1 6.2 63 652-714 85-150 (177)
351 2dgw_A Probable RNA-binding pr 95.1 0.036 1.2E-06 48.8 6.4 59 653-713 8-69 (91)
352 2jwn_A Embryonic polyadenylate 95.1 0.019 6.4E-07 53.5 4.7 59 654-713 35-97 (124)
353 1iqt_A AUF1, heterogeneous nuc 95.1 0.021 7.2E-07 48.3 4.6 55 657-711 1-59 (75)
354 1x5p_A Negative elongation fac 95.1 0.024 8.2E-07 50.8 5.2 58 653-714 13-70 (97)
355 2nlw_A Eukaryotic translation 95.0 0.018 6.1E-07 52.7 4.3 62 653-714 13-82 (105)
356 3zzy_A Polypyrimidine tract-bi 94.9 0.033 1.1E-06 54.6 6.0 66 648-714 19-87 (130)
357 1wel_A RNA-binding protein 12; 94.9 0.029 9.9E-07 52.6 5.4 59 653-711 23-85 (124)
358 2lmi_A GRSF-1, G-rich sequence 94.9 0.044 1.5E-06 50.2 6.5 60 652-711 8-73 (107)
359 2ki2_A SS-DNA binding protein 94.8 0.012 4.2E-07 51.6 2.6 57 656-713 2-62 (90)
360 2xs2_A Deleted in azoospermia- 94.7 0.016 5.6E-07 52.1 3.1 59 653-711 7-68 (102)
361 2lcw_A RNA-binding protein FUS 93.7 0.0055 1.9E-07 56.7 0.0 62 653-714 5-78 (116)
362 1wg5_A Heterogeneous nuclear r 94.6 0.047 1.6E-06 49.8 6.0 60 653-712 13-76 (104)
363 1wez_A HnRNP H', FTP-3, hetero 94.6 0.034 1.2E-06 51.1 4.9 59 652-711 12-73 (102)
364 2bz2_A Negative elongation fac 94.5 0.058 2E-06 51.1 6.6 58 653-714 37-94 (121)
365 2l9w_A U4/U6 snRNA-associated- 94.5 0.11 3.7E-06 50.4 8.3 61 570-630 21-86 (117)
366 1mke_A WIP - N-WAsp, fusion pr 94.4 0.021 7.2E-07 57.7 3.5 47 673-719 93-142 (152)
367 2diu_A KIAA0430 protein; struc 94.2 0.072 2.5E-06 50.2 6.3 58 654-714 7-67 (96)
368 2e5i_A Heterogeneous nuclear r 94.0 0.075 2.6E-06 51.4 6.3 58 655-714 25-83 (124)
369 3q2s_C Cleavage and polyadenyl 93.9 0.028 9.6E-07 58.9 3.4 60 654-713 67-132 (229)
370 2hgm_A HNRPF protein, heteroge 93.9 0.043 1.5E-06 53.1 4.4 59 654-712 41-103 (126)
371 2ifs_A N-WAsp, wiskott-aldrich 93.8 0.038 1.3E-06 56.7 4.0 47 674-720 111-160 (169)
372 3pq1_A Poly(A) RNA polymerase; 93.3 0.031 1.1E-06 65.0 2.7 54 568-622 51-105 (464)
373 2dha_A FLJ20171 protein; RRM d 93.1 0.15 5.1E-06 49.0 6.5 58 654-711 22-86 (123)
374 2dit_A HIV TAT specific factor 92.2 0.22 7.5E-06 46.0 6.2 62 653-714 13-85 (112)
375 2voo_A Lupus LA protein; RNA-b 92.1 0.14 4.8E-06 52.2 5.2 60 654-713 108-170 (193)
376 2pe8_A Splicing factor 45; RRM 91.6 0.36 1.2E-05 44.9 6.9 63 652-714 5-77 (105)
377 2dnn_A RNA-binding protein 12; 91.5 0.19 6.4E-06 47.2 5.0 54 654-710 15-73 (109)
378 3u0r_A Apoptosis inhibitor 5; 90.6 0.58 2E-05 55.0 8.9 142 54-263 6-147 (507)
379 2l08_A Regulator of nonsense t 90.0 0.31 1.1E-05 46.1 4.9 61 570-630 9-77 (97)
380 1whv_A Poly(A)-specific ribonu 89.2 1.2 4.1E-05 42.4 8.1 62 571-635 17-78 (100)
381 2dhx_A Poly (ADP-ribose) polym 86.9 1.7 5.7E-05 41.7 7.7 63 568-632 6-77 (104)
382 1wwh_A Nucleoporin 35, nucleop 86.6 1.4 4.7E-05 43.1 7.1 74 555-630 9-82 (119)
383 3ctr_A Poly(A)-specific ribonu 85.7 0.64 2.2E-05 44.3 4.2 55 572-630 8-63 (101)
384 1qc6_A EVH1 domain from ENA/VA 85.2 0.87 3E-05 44.4 5.0 48 674-721 63-113 (130)
385 3s6e_A RNA-binding protein 39; 84.7 1.6 5.4E-05 41.5 6.4 65 650-714 2-76 (114)
386 1owx_A Lupus LA protein, SS-B, 83.1 1.6 5.6E-05 42.3 5.9 59 652-713 15-76 (121)
387 3v4m_A Splicing factor U2AF 65 83.0 1.9 6.7E-05 39.9 6.1 62 653-714 3-80 (105)
388 3ue2_A Poly(U)-binding-splicin 82.8 1.9 6.4E-05 41.1 6.1 61 654-714 19-92 (118)
389 3h0g_A DNA-directed RNA polyme 82.5 0.25 8.7E-06 65.4 0.0 10 669-678 1351-1360(1752)
390 1evh_A WH1 domain, protein (ME 80.7 1.8 6.1E-05 41.4 5.1 37 680-716 71-107 (112)
391 1egx_A VAsp, vasodilator-stimu 79.1 2.1 7.1E-05 41.2 5.0 36 680-715 73-108 (115)
392 3d45_A Poly(A)-specific ribonu 78.6 3.2 0.00011 48.7 7.4 62 569-634 439-501 (507)
393 2jp2_A Spred-2, sprouty-relate 74.8 3.1 0.0001 40.8 4.9 36 680-715 84-119 (126)
394 3h0g_A DNA-directed RNA polyme 74.3 0.64 2.2E-05 61.8 0.0 14 56-69 273-286 (1752)
395 1xod_A Spred1; sprouty, EVH1, 71.4 3.5 0.00012 39.8 4.4 39 679-717 74-112 (118)
396 1jmt_A Splicing factor U2AF 35 58.0 9.2 0.00031 35.2 4.3 23 692-714 67-89 (104)
397 1ddw_A GLGF-domain protein hom 56.9 9.2 0.00032 37.1 4.2 36 681-716 69-106 (120)
398 2d9o_A DNAJ (HSP40) homolog, s 55.6 13 0.00046 34.3 5.0 46 666-712 28-73 (100)
399 1i2h_A PSD-ZIP45(homer-1C/VESL 48.3 15 0.00051 37.8 4.4 35 681-715 74-110 (168)
400 1whv_A Poly(A)-specific ribonu 37.1 79 0.0027 30.2 7.0 57 656-716 16-72 (100)
401 2j8a_A Histone-lysine N-methyl 36.8 38 0.0013 33.9 5.0 59 656-714 3-74 (136)
402 3obv_E Protein diaphanous homo 36.1 18 0.0006 42.1 3.0 59 1021-1079 25-99 (457)
403 2h8h_A Proto-oncogene tyrosine 33.1 9.1 0.00031 44.2 0.0 10 1066-1075 223-232 (535)
404 4eah_A Formin-like protein 3, 31.8 22 0.00076 40.5 2.9 58 1022-1079 34-103 (402)
405 1wey_A Calcipressin 1; structu 30.8 45 0.0015 31.9 4.3 59 655-713 5-66 (104)
406 3dxb_A Thioredoxin N-terminall 29.7 47 0.0016 33.6 4.6 48 667-714 141-196 (222)
407 4bby_A Alkyldihydroxyacetoneph 29.7 40 0.0014 40.5 4.8 78 562-639 334-423 (658)
408 3pm9_A Putative oxidoreductase 28.7 46 0.0016 38.6 4.8 78 563-640 177-268 (476)
409 3p3d_A Nucleoporin 53; structu 27.2 37 0.0013 33.8 3.2 46 580-625 16-81 (132)
410 2h8h_A Proto-oncogene tyrosine 27.0 13 0.00046 42.8 0.0 6 989-994 121-126 (535)
411 2uuu_A Alkyldihydroxyacetoneph 26.5 47 0.0016 39.6 4.5 77 563-639 266-353 (584)
412 2j1d_G DAAM1, disheveled-assoc 25.3 25 0.00084 41.0 1.8 91 1022-1112 30-152 (483)
413 4ffe_X CPXV018 protein; viral 24.3 24 0.00084 34.4 1.3 21 242-262 50-70 (151)
No 1
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.76 E-value=5.3e-18 Score=163.48 Aligned_cols=139 Identities=17% Similarity=0.219 Sum_probs=112.4
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe--------ccCceEEEEecCHHHHHHHHHhhccCcce-------
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF--------PIKGFALVEYINIIDAIRAREYIRNHFSW------- 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~--------~~rgfAFVeFr~i~DAi~A~~~L~G~~~~------- 632 (1134)
+.+++||||||+.++||++|+++|++||+|.++++. ..+|||||+|.+.++|.+|++.|+|..+.
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 357899999999999999999999999999999986 46799999999999999999999997653
Q ss_pred EEEEeeccCCCCcccccccccccceEEEccCCChhhHHHHHHHHhhccccCCcee-EecC--CCceeeEeecCHHHHHHH
Q 001164 633 RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLS--CEGALLMEFRTPEEATTA 709 (1134)
Q Consensus 633 RI~f~r~~lGa~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfls--de~~a~LEFeSeEEAa~a 709 (1134)
++.+.+..-. .....+.|||++++..+++++|...|.++|....+.+ ++.. .++.++++|.+.++|..|
T Consensus 81 ~~~~~~~~~~--------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A 152 (175)
T 3nmr_A 81 QMKPADSEKN--------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTA 152 (175)
T ss_dssp EEEECGGGCC--------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHH
T ss_pred EEcccccccc--------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHH
Confidence 4444433111 1236889999999999999999999998775444333 2211 145699999999999999
Q ss_pred HHHHH
Q 001164 710 MAHLR 714 (1134)
Q Consensus 710 k~~IR 714 (1134)
+..+.
T Consensus 153 ~~~l~ 157 (175)
T 3nmr_A 153 IKAMH 157 (175)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 98874
No 2
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.76 E-value=5.6e-18 Score=161.79 Aligned_cols=137 Identities=18% Similarity=0.205 Sum_probs=113.4
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccC------ceEEEEecCHHHHHHHHHhhccCcce----EEEEee
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK------GFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~r------gfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r 638 (1134)
.+++||||||+.+++|+||+++|++||+|.++.+.+.+ |||||+|.+.++|..|++.|+|..+. +|++.+
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999997654 99999999999999999999998876 666665
Q ss_pred ccCCCCcccccccccccceEEEccCCChhhHHHHHHHHhhccccCCcee-EecC---CCceeeEeecCHHHHHHHHHHHH
Q 001164 639 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLS---CEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 639 ~~lGa~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfls---de~~a~LEFeSeEEAa~ak~~IR 714 (1134)
+... ....+.|||++++..+++++|...|.++|....+.+ .+.. .++.++++|.+.++|..|+..+.
T Consensus 81 ~~~~---------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 151 (167)
T 1fxl_A 81 PSSA---------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 151 (167)
T ss_dssp CCCG---------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCcc---------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc
Confidence 4211 235788999999999999999999988764443333 2211 24679999999999999988774
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.75 E-value=9.4e-18 Score=160.07 Aligned_cols=137 Identities=16% Similarity=0.211 Sum_probs=112.6
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhccCcce----EEEEeeccC
Q 001164 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 641 (1134)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~~l 641 (1134)
|+||||||+.++||+||++.|++||+|.++++.+ .+|||||+|.+.++|.+|++.|+|..+. +|++....-
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 6899999999999999999999999999999964 4699999999999999999999999876 666664421
Q ss_pred CCCcccccccccccceEEEccCCChhhHHHHHHHHhhccccCCceeEec----CCCceeeEeecCHHHHHHHHHHHH
Q 001164 642 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 642 Ga~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfl----sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.. ...+++.|||++++..+++++|...|..+|....+.+..- ..++.++++|.+.++|..|+..+.
T Consensus 81 ~~-------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 150 (166)
T 3md3_A 81 QS-------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 150 (166)
T ss_dssp CC-------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CC-------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 11 1346889999999999999999999988765444333211 124579999999999999988774
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.74 E-value=1.5e-17 Score=159.80 Aligned_cols=137 Identities=18% Similarity=0.240 Sum_probs=113.0
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEee
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r 638 (1134)
++++||||||+.+++++||+++|++||+|.++.+.+ .+|||||+|.+.++|.+|++.|+|..+. +|++.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 679999999999999999999999999999999865 3589999999999999999999999876 666665
Q ss_pred ccCCCCcccccccccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec---CCCceeeEeecCHHHHHHHHHHHH
Q 001164 639 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 639 ~~lGa~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl---sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..-. ...++.|||++++..+++++|...|.++|....+.+ .+. ..++.++++|.+.++|..|+..+.
T Consensus 82 ~~~~---------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 152 (168)
T 1b7f_A 82 PGGE---------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 152 (168)
T ss_dssp CCSS---------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCcc---------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 4211 236789999999999999999999988764443322 211 113679999999999999998774
No 5
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.73 E-value=4.6e-17 Score=167.39 Aligned_cols=147 Identities=18% Similarity=0.153 Sum_probs=116.1
Q ss_pred cCceEEeccCC-CccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhccCcce----EEEEeeccCC
Q 001164 569 ASKQLWLGSFG-PEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLG 642 (1134)
Q Consensus 569 ~s~~LWVGnL~-~~vte~dL~~~F~~yGpLe~v~~~~-~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~~lG 642 (1134)
++++||||||+ .++++++|+++|++||.|.+|.+.+ .||||||+|.+.++|..|++.|+|..+. +|.|.+..-.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 57899999999 7999999999999999999999987 6899999999999999999999999886 7777642110
Q ss_pred C--------Ccc----------cccc----------cccccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCC--
Q 001164 643 T--------KGV----------INGV----------AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSC-- 692 (1134)
Q Consensus 643 a--------~G~----------~~Gv----------a~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsd-- 692 (1134)
. +|. .+.. ...+++.|||++++..+++|+|..-|..+|-..+..++...+
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~ 162 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS 162 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC
Confidence 0 000 0000 013578899999999999999999998887652233333332
Q ss_pred --CceeeEeecCHHHHHHHHHHHHH
Q 001164 693 --EGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 693 --e~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
++..+++|++.+||..|+..|..
T Consensus 163 ~~~g~gfV~f~~~~~A~~Ai~~lng 187 (205)
T 3tyt_A 163 ERSSSGLLEWDSKSDALETLGFLNH 187 (205)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCceEEEEEeCCHHHHHHHHHHhCC
Confidence 47899999999999999998853
No 6
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.73 E-value=1.7e-17 Score=169.22 Aligned_cols=140 Identities=17% Similarity=0.231 Sum_probs=111.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
.++++||||||+.++||++|+++|++||+|.+|.+.+ .+|||||+|.+.+||..|++.|+|..+. ++.+.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 3678999999999999999999999999999999854 5789999999999999999999998765 44443
Q ss_pred eccCCCCcccccccccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec-CCCceeeEeecCHHHHHHHHHHHH
Q 001164 638 DVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL-SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 638 r~~lGa~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl-sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.... .......+.||||+++..+++++|..-|..+|....+.+ ++. ..++.++++|.+.++|..|+..|.
T Consensus 93 ~~~~-------~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~ln 164 (213)
T 4f02_A 93 QRDP-------SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 164 (213)
T ss_dssp CCCT-------HHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cccc-------cccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhC
Confidence 3210 011235778999999999999999999988875444433 222 235689999999999999998874
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.71 E-value=3.4e-17 Score=163.68 Aligned_cols=150 Identities=19% Similarity=0.218 Sum_probs=113.9
Q ss_pred cccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce--EEEE
Q 001164 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW--RVKF 636 (1134)
Q Consensus 565 dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~--RI~f 636 (1134)
+-...+++||||||+.+++|+||+++|++||+|.+|.+.+ .+|||||+|.+.++|.+|++.|+|..+. +|++
T Consensus 23 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 102 (216)
T 2qfj_A 23 GALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 102 (216)
T ss_dssp HHHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE
T ss_pred cccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE
Confidence 3445689999999999999999999999999999999954 5899999999999999999999999876 3333
Q ss_pred eeccCCC--Ccccc--cccccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec---CCCceeeEeecCHHHHHH
Q 001164 637 MDVGLGT--KGVIN--GVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATT 708 (1134)
Q Consensus 637 ~r~~lGa--~G~~~--Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl---sde~~a~LEFeSeEEAa~ 708 (1134)
....-.. ..... ......++.|||++++..+++++|...|.++|....+.+ .+. ...+.++++|.+.++|..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 103 GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp ECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred ecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 2221000 00000 001235789999999999999999999988764443322 221 115689999999999999
Q ss_pred HHHHHH
Q 001164 709 AMAHLR 714 (1134)
Q Consensus 709 ak~~IR 714 (1134)
|+..+.
T Consensus 183 A~~~l~ 188 (216)
T 2qfj_A 183 AVSSMN 188 (216)
T ss_dssp HHHHHT
T ss_pred HHHHcc
Confidence 998774
No 8
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.70 E-value=8.1e-17 Score=155.57 Aligned_cols=139 Identities=15% Similarity=0.200 Sum_probs=111.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhcc----C-------CcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce--EE
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRF----G-------PLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW--RV 634 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~y----G-------pLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~--RI 634 (1134)
.++++||||||+.++||+||++.|++| | +|.++.+.++||||||+|.+.++|.+|+ .|+|..+. +|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 80 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCcee
Confidence 468999999999999999999999999 7 8899999999999999999999999999 89999876 33
Q ss_pred EEeeccCCCCcccccccccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec-C--CCceeeEeecCHHHHHHHH
Q 001164 635 KFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL-S--CEGALLMEFRTPEEATTAM 710 (1134)
Q Consensus 635 ~f~r~~lGa~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl-s--de~~a~LEFeSeEEAa~ak 710 (1134)
++....-. .....++.|||++++..+++++|...|..+|....+.+ .+. . .++.++++|.+.++|..|+
T Consensus 81 ~v~~~~~~-------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 153 (172)
T 2g4b_A 81 KIRRPHDY-------QPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 153 (172)
T ss_dssp EEECCSSC-------CCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHH
T ss_pred eecCCccc-------CCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Confidence 43322100 01234799999999999999999999988765443333 221 1 1467999999999999998
Q ss_pred HHHH
Q 001164 711 AHLR 714 (1134)
Q Consensus 711 ~~IR 714 (1134)
..+.
T Consensus 154 ~~l~ 157 (172)
T 2g4b_A 154 AGLN 157 (172)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 8774
No 9
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.70 E-value=1.2e-16 Score=164.54 Aligned_cols=145 Identities=15% Similarity=0.137 Sum_probs=116.2
Q ss_pred ccCceEEeccCCC-ccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhccCcce----EEEEeeccC
Q 001164 568 SASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 641 (1134)
Q Consensus 568 ~~s~~LWVGnL~~-~vte~dL~~~F~~yGpLe~v~~~~-~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~~l 641 (1134)
.++++||||||+. +++|++|+++|++||.|.+|.+.+ .+|||||+|.+.++|..|++.|+|..+. +|++++...
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 111 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 111 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCcc
Confidence 5789999999999 999999999999999999999987 4699999999999999999999999886 777775320
Q ss_pred ------CCC--c------------c--ccc----ccccccceEEEccCCChhhHHHHHHHHhhcc-ccCCceeEe-cCCC
Q 001164 642 ------GTK--G------------V--ING----VAVGSCFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMVTD-LSCE 693 (1134)
Q Consensus 642 ------Ga~--G------------~--~~G----va~~~s~~LwVG~iss~~~keeilhELykfg-lk~p~~ftf-lsde 693 (1134)
+.. + . ... ....+++.|||++++..+++++|...|..+| .... +.. ..++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~--v~i~~~~~ 189 (229)
T 2adc_A 112 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG--FKFFQKDR 189 (229)
T ss_dssp CCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEE--EEECSSST
T ss_pred ccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeE--EEEEECCC
Confidence 000 0 0 000 0023579999999999999999999998876 2222 333 2368
Q ss_pred ceeeEeecCHHHHHHHHHHHH
Q 001164 694 GALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 694 ~~a~LEFeSeEEAa~ak~~IR 714 (1134)
+.++++|.+.++|..|+..+.
T Consensus 190 g~afV~f~~~~~A~~Ai~~l~ 210 (229)
T 2adc_A 190 KMALIQMGSVEEAVQALIDLH 210 (229)
T ss_dssp TCEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEEECCHHHHHHHHHHHC
Confidence 899999999999999988774
No 10
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.70 E-value=1.1e-16 Score=168.22 Aligned_cols=136 Identities=15% Similarity=0.219 Sum_probs=115.9
Q ss_pred cccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce----EEEEeecc
Q 001164 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1134)
Q Consensus 565 dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~~ 640 (1134)
+-+..+++||||||+.++|+++|+.+|++||.|.+|.+.++||||||+|.+.++|..|++.|+|..+. +|++..
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~-- 94 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT-- 94 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC--
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc--
Confidence 34677899999999999999999999999999999999999999999999999999999999999775 555443
Q ss_pred CCCCcccccccccccceEEEccCCChhhHHHHHHHHhhccccCCcee-EecC--CCceeeEeecCHHHHHHHHHHHHH
Q 001164 641 LGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLS--CEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 641 lGa~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfls--de~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
+++.||||+++..+++++|...|..+|....+.+ .+.. ..+.++++|.+.++|..|+..++.
T Consensus 95 -------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~ 159 (261)
T 3sde_A 95 -------------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGD 159 (261)
T ss_dssp -------------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred -------------cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcC
Confidence 3678999999999999999999988775444433 3322 256789999999999999988843
No 11
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.70 E-value=1.4e-16 Score=167.01 Aligned_cols=146 Identities=12% Similarity=0.208 Sum_probs=116.1
Q ss_pred cccCceEEeccCCCccCHHHHH----HHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhccCcce----EEE
Q 001164 567 FSASKQLWLGSFGPEASEAHIR----FQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 635 (1134)
Q Consensus 567 ~~~s~~LWVGnL~~~vte~dL~----~~F~~yGpLe~v~~~~---~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~ 635 (1134)
..++++||||||+.+++|+||+ ++|++||.|.+|.+.+ .||||||+|.+.++|.+|++.|+|..+. +|+
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 3679999999999999999977 8999999999999865 7899999999999999999999998876 777
Q ss_pred EeeccCCC----------------------------------------Cccccc--------------------------
Q 001164 636 FMDVGLGT----------------------------------------KGVING-------------------------- 649 (1134)
Q Consensus 636 f~r~~lGa----------------------------------------~G~~~G-------------------------- 649 (1134)
|++..... .+...|
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 77542110 000000
Q ss_pred ------------------------------------ccccccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCC
Q 001164 650 ------------------------------------VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCE 693 (1134)
Q Consensus 650 ------------------------------------va~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde 693 (1134)
....+++.|||++++..+++++|...|.++|-... +....++
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~--v~~~~~~ 243 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKE--VRLVPGR 243 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEE--EEEecCC
Confidence 00115788999999999999999999988764443 3333444
Q ss_pred -ceeeEeecCHHHHHHHHHHHH
Q 001164 694 -GALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 694 -~~a~LEFeSeEEAa~ak~~IR 714 (1134)
+.++++|.+.++|..|+..+.
T Consensus 244 ~g~afV~f~~~~~A~~A~~~l~ 265 (282)
T 3pgw_A 244 HDIAFVEFDNEVQAGAARDALQ 265 (282)
T ss_pred CcEEEEEeCCHHHHHHHHHHcC
Confidence 799999999999999998874
No 12
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.70 E-value=1.8e-16 Score=157.80 Aligned_cols=143 Identities=16% Similarity=0.159 Sum_probs=115.1
Q ss_pred CceEEeccCCC-ccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhccCcce----EEEEeeccC--
Q 001164 570 SKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL-- 641 (1134)
Q Consensus 570 s~~LWVGnL~~-~vte~dL~~~F~~yGpLe~v~~~~-~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~~l-- 641 (1134)
+++||||||+. ++++++|+++|++||.|.++.+.+ .+|||||+|.+.++|..|++.|+|..+. +|++++...
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 82 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQ 82 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcC
Confidence 68999999999 999999999999999999999987 4799999999999999999999998886 788775321
Q ss_pred ----CCC--cccc-------------c-----ccccccceEEEccCCChhhHHHHHHHHhhcc-ccCCceeEe-cCCCce
Q 001164 642 ----GTK--GVIN-------------G-----VAVGSCFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMVTD-LSCEGA 695 (1134)
Q Consensus 642 ----Ga~--G~~~-------------G-----va~~~s~~LwVG~iss~~~keeilhELykfg-lk~p~~ftf-lsde~~ 695 (1134)
+.. +... + ....+++.|||++++..+++++|...|..+| .... +.. ..+++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~--v~i~~~~~g~ 160 (198)
T 1qm9_A 83 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG--FKFFQKDRKM 160 (198)
T ss_dssp CSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCE--EEESSTTSSC
T ss_pred CCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceE--EEEEeCCCcE
Confidence 000 0000 0 0013589999999999999999999999876 3332 333 235789
Q ss_pred eeEeecCHHHHHHHHHHHH
Q 001164 696 LLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 696 a~LEFeSeEEAa~ak~~IR 714 (1134)
++++|.+.++|..|+..+.
T Consensus 161 afV~f~~~~~A~~A~~~l~ 179 (198)
T 1qm9_A 161 ALIQMGSVEEAVQALIDLH 179 (198)
T ss_dssp EEEECSSHHHHHHHHHHHT
T ss_pred EEEEeCCHHHHHHHHHHhc
Confidence 9999999999999988774
No 13
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.70 E-value=1.2e-16 Score=157.49 Aligned_cols=140 Identities=16% Similarity=0.206 Sum_probs=106.4
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
..+++||||||+.++||+||+++|++||.|.++.+.+ .+|||||+|.+.++|.+|++. +|..+. +|++.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 4689999999999999999999999999999999865 478999999999999999987 666554 55555
Q ss_pred eccCCCCcccccccccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec---CCCceeeEeecCHHHHHHHHH
Q 001164 638 DVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATTAMA 711 (1134)
Q Consensus 638 r~~lGa~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl---sde~~a~LEFeSeEEAa~ak~ 711 (1134)
...-... ..-....++.|||++++..+++++|...|..+|....+.+ .+. ...+.++++|.+.++|..|+.
T Consensus 90 ~~~~~~~---~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 90 VSREDSQ---RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp CC--------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred cCccccc---ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 3321110 0011235789999999999999999999988765444333 221 124579999999999998875
No 14
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.69 E-value=1.2e-16 Score=157.77 Aligned_cols=145 Identities=17% Similarity=0.216 Sum_probs=112.7
Q ss_pred cCceEEeccCCCccCHHHHHHHhhcc----C-------CcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce----E
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRF----G-------PLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----R 633 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~y----G-------pLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----R 633 (1134)
.+|+||||||+.+++|+||+++|++| | .|.++.+.+.||||||+|.+.++|.+|+ .|+|..+. +
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 58999999999999999999999999 6 8888899899999999999999999999 89999876 4
Q ss_pred EEEeeccCCCC-----------cccccccccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec---CCCceeeE
Q 001164 634 VKFMDVGLGTK-----------GVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLM 698 (1134)
Q Consensus 634 I~f~r~~lGa~-----------G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl---sde~~a~L 698 (1134)
|++........ +........+++.|||++++..+++++|...|.++|....+.+ .+. ..++.+++
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV 161 (198)
T 2yh0_A 82 IRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 161 (198)
T ss_dssp EECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEE
T ss_pred EeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEE
Confidence 54443221000 1111112246899999999999999999999998775443333 221 11567999
Q ss_pred eecCHHHHHHHHHHHH
Q 001164 699 EFRTPEEATTAMAHLR 714 (1134)
Q Consensus 699 EFeSeEEAa~ak~~IR 714 (1134)
+|.+.++|..|+..+.
T Consensus 162 ~f~~~~~a~~A~~~l~ 177 (198)
T 2yh0_A 162 EYVDINVTDQAIAGLN 177 (198)
T ss_dssp EESSSSHHHHHHHHHT
T ss_pred EECCHHHHHHHHHHcC
Confidence 9999999999988774
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.66 E-value=2.5e-16 Score=151.46 Aligned_cols=134 Identities=10% Similarity=0.120 Sum_probs=104.3
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHh---hccCcceEEEEee
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREY---IRNHFSWRVKFMD 638 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~---L~G~~~~RI~f~r 638 (1134)
+++++||||||+.++||++|+++|++||+|.++.+.+ ++|||||+|.+.++|.+|++. |+|+.+ ++.+..
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i-~v~~~~ 79 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVI-DPKRAI 79 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEEC-CCEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEc-cccccc
Confidence 3689999999999999999999999999999999865 469999999999999999997 555422 233222
Q ss_pred ccCCCCcccccccccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Ee---cCCCceeeEeecCHHHHHHHHH
Q 001164 639 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMA 711 (1134)
Q Consensus 639 ~~lGa~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tf---lsde~~a~LEFeSeEEAa~ak~ 711 (1134)
.. .....++.||||+++..+++++|...|..+|....+.+ .+ -..++.++++|.+.++|.+|+.
T Consensus 80 ~~---------~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 80 PR---------DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 147 (167)
T ss_dssp CH---------HHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH
T ss_pred ch---------hhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh
Confidence 10 01235789999999999999999999988775443322 11 1224689999999999998875
No 16
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.66 E-value=4.5e-16 Score=151.46 Aligned_cols=138 Identities=14% Similarity=0.152 Sum_probs=107.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcce-----EEEeccCceEEEEecCHHHHHHHHHhhccCcce----EEEEee
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH-----FFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~-----v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r 638 (1134)
..+++||||||+.+++|+||++.|++||.+.. ...-..||||||+|.+.++|.+|+ .|+|..+. +|++..
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCC
Confidence 35799999999999999999999999997655 333458899999999999999999 59999876 444443
Q ss_pred ccCCCCcccccccccccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 639 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 639 ~~lGa~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..-. .....++.|||++++..+++++|.+.|..++-...+ ...-..++.++++|.+.++|..|+..+.
T Consensus 90 ~~~~-------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 1fje_B 90 GRDS-------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQ 157 (175)
T ss_dssp CSSC-------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred Cccc-------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhC
Confidence 3111 123478999999999999999999988876532221 1111346789999999999999998774
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.65 E-value=8.1e-16 Score=161.49 Aligned_cols=132 Identities=14% Similarity=0.153 Sum_probs=111.0
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce----EEEEeeccCC
Q 001164 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLG 642 (1134)
Q Consensus 567 ~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~~lG 642 (1134)
+..+++||||||+.++||+||+++|++|| |.++.+-..+|||||+|.+.+||..|++.|+|..+. +|++.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~----- 92 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ----- 92 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC-----
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec-----
Confidence 45789999999999999999999999999 999999889999999999999999999999999765 44432
Q ss_pred CCcccccccccccceEEEccCCChhhHHHHHHHHhhccccCCceeE-ecC---CCceeeEeecCHHHHHHHHHHHH
Q 001164 643 TKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-DLS---CEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 643 a~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ft-fls---de~~a~LEFeSeEEAa~ak~~IR 714 (1134)
...+.||||+++..+++++|...|..+|....+.+. +.. ..+.++++|.+.++|..++..+.
T Consensus 93 ----------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 158 (284)
T 3smz_A 93 ----------PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLL 158 (284)
T ss_dssp ----------CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ----------CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 246789999999999999999999887754443332 211 24579999999999999988774
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.62 E-value=1.6e-15 Score=159.94 Aligned_cols=132 Identities=11% Similarity=0.102 Sum_probs=106.7
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhccCcce--EEEEeeccC
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGL 641 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~----~rgfAFVeFr~i~DAi~A~~~L~G~~~~--RI~f~r~~l 641 (1134)
..+++||||||+.++|+++|+++|++||+|.+|.+.+ .+|||||+|.+.++|.+|++ |+|..+. .|+...
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~--- 114 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSH--- 114 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEE---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEE---
Confidence 4689999999999999999999999999999999977 68999999999999999995 9998765 333221
Q ss_pred CCCcccccccccccceEEEccCCChhhHHHHHHHHhhcc-ccCCcee-Eec--CCCceeeEeecCHHHHHHHHHHHH
Q 001164 642 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMV-TDL--SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 642 Ga~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfg-lk~p~~f-tfl--sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..++.||||+++..+++++|...|..+| ....+.+ .+. ..++.++++|.+.++|..|+..+.
T Consensus 115 -----------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 180 (292)
T 2ghp_A 115 -----------LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLN 180 (292)
T ss_dssp -----------CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHT
T ss_pred -----------CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 2478999999999999999999998877 4443322 111 246789999999999999998875
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.60 E-value=6e-15 Score=154.93 Aligned_cols=152 Identities=20% Similarity=0.255 Sum_probs=120.7
Q ss_pred ecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCc
Q 001164 557 FDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHF 630 (1134)
Q Consensus 557 ~~g~~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~ 630 (1134)
++|-+.-...-...++||||||+.++++++|+++|++||.|.++.+.. ++|||||+|.+.++|.+|++.|+|..
T Consensus 82 ~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~ 161 (284)
T 3smz_A 82 LRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKP 161 (284)
T ss_dssp ETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred eCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 445555555566789999999999999999999999999999998764 46899999999999999999999988
Q ss_pred ce----EEEEeeccCCCCcccccccccccceEEEccCCChh-hHHHHHHHHhhccccCCcee-EecC--CCceeeEeecC
Q 001164 631 SW----RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQW-AKDEILHESYKVVYKGPYMV-TDLS--CEGALLMEFRT 702 (1134)
Q Consensus 631 ~~----RI~f~r~~lGa~G~~~Gva~~~s~~LwVG~iss~~-~keeilhELykfglk~p~~f-tfls--de~~a~LEFeS 702 (1134)
+. +|++++..-.. .....++.|||++++..+ ++++|...|..+|....+.+ .+.. ..+.++++|.+
T Consensus 162 ~~g~~i~v~~a~~~~~~------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~ 235 (284)
T 3smz_A 162 LGPRTLYVHWTDAGQLT------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYET 235 (284)
T ss_dssp ETTEECEEEECCGGGCC------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSS
T ss_pred eCCcEEEEEECCCCCCC------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCC
Confidence 76 67777653111 112468899999999996 78888888887765444433 2221 26789999999
Q ss_pred HHHHHHHHHHHH
Q 001164 703 PEEATTAMAHLR 714 (1134)
Q Consensus 703 eEEAa~ak~~IR 714 (1134)
.++|..|+..++
T Consensus 236 ~~~A~~A~~~l~ 247 (284)
T 3smz_A 236 AEMAEEAQQQAD 247 (284)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999999998874
No 20
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.59 E-value=1.9e-15 Score=141.48 Aligned_cols=101 Identities=15% Similarity=0.145 Sum_probs=64.0
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhccCcce----EEEEeeccC
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 641 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~----~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~~l 641 (1134)
+.+||||||+.+++|+||+++|++||.|.+|.+.+ +||||||+|.+.+||.+|++.|+|..+. +|++++..-
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 56899999999999999999999999999999865 4799999999999999999999999886 666664421
Q ss_pred CCCcccccccccccceEEEccCCChhhHHH
Q 001164 642 GTKGVINGVAVGSCFHVYVGNIPNQWAKDE 671 (1134)
Q Consensus 642 Ga~G~~~Gva~~~s~~LwVG~iss~~~kee 671 (1134)
. +..-.+........|||++++..++++.
T Consensus 85 ~-~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 85 E-REAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp C-----------------------------
T ss_pred c-cccccccccCCCCceEeCCCCCCccccc
Confidence 1 1111122234567899999999988763
No 21
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.57 E-value=6.3e-15 Score=155.36 Aligned_cols=144 Identities=13% Similarity=0.096 Sum_probs=112.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccC-CcceEEEec-----cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFG-PLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yG-pLe~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
..+++||||||+.++++++|+++|++|| .|.++.+.+ .+|||||+|.+.++|..|++.|+|..+. +|+++
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3689999999999999999999999999 999999865 6899999999999999999999999886 67777
Q ss_pred eccCCCCcccccccccccceEEEccCCCh-hhHHHHHHHHhhccccCCcee-Ee----cCCCceeeEeecCHHHHHHHHH
Q 001164 638 DVGLGTKGVINGVAVGSCFHVYVGNIPNQ-WAKDEILHESYKVVYKGPYMV-TD----LSCEGALLMEFRTPEEATTAMA 711 (1134)
Q Consensus 638 r~~lGa~G~~~Gva~~~s~~LwVG~iss~-~~keeilhELykfglk~p~~f-tf----lsde~~a~LEFeSeEEAa~ak~ 711 (1134)
++.-..... ......++.|||++++.. +++++|...|..+|....+.+ .+ -..++.++++|.+.++|..|+
T Consensus 195 ~~~~~~~~~--~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 195 NPLEKSKRT--DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp CCC-----------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred CCCcccccc--cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 653221100 012346899999999999 999999999998764433322 11 122567999999999999998
Q ss_pred HHH
Q 001164 712 HLR 714 (1134)
Q Consensus 712 ~IR 714 (1134)
.+.
T Consensus 272 ~l~ 274 (292)
T 2ghp_A 272 QMN 274 (292)
T ss_dssp GGT
T ss_pred Hhc
Confidence 663
No 22
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=3.1e-14 Score=128.95 Aligned_cols=92 Identities=18% Similarity=0.253 Sum_probs=76.0
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEecc-CceEEEEecCHHHHHHHHHhhccCcce----EEEEeeccCCCCc
Q 001164 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLGTKG 645 (1134)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~-rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~~lGa~G 645 (1134)
++||||||+.+++++||+++|++||+|.++.+... +|||||+|.+.++|.+|++.|+|..+. +|++++..-..+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 80 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 80 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCccc
Confidence 58999999999999999999999999999999884 999999999999999999999999876 8888865421111
Q ss_pred cccccc---ccccceEEEccCC
Q 001164 646 VINGVA---VGSCFHVYVGNIP 664 (1134)
Q Consensus 646 ~~~Gva---~~~s~~LwVG~is 664 (1134)
.|-. ...+..||||++.
T Consensus 81 --~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 81 --FDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp --CCSCCCSCCCCSCCCSCCCC
T ss_pred --CCCCCccccCCCceecCCCC
Confidence 0111 1247889999985
No 23
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=2.8e-14 Score=129.13 Aligned_cols=77 Identities=22% Similarity=0.361 Sum_probs=70.8
Q ss_pred cccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce----EEEEee
Q 001164 563 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1134)
Q Consensus 563 a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r 638 (1134)
......++++||||||+.+++++||+++|++||+|++|.+.++||||||+|.+.++|.+|++.|+|..+. +|+|++
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 8 GEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 3455678999999999999999999999999999999999999999999999999999999999999876 777775
Q ss_pred c
Q 001164 639 V 639 (1134)
Q Consensus 639 ~ 639 (1134)
.
T Consensus 88 ~ 88 (99)
T 2cpj_A 88 H 88 (99)
T ss_dssp C
T ss_pred C
Confidence 5
No 24
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.50 E-value=4.6e-14 Score=132.42 Aligned_cols=68 Identities=24% Similarity=0.320 Sum_probs=62.8
Q ss_pred cccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCc
Q 001164 563 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHF 630 (1134)
Q Consensus 563 a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~ 630 (1134)
......+++.||||||+.++||+||+++|++||.|.+|.+.+.||||||+|.+.++|.+|+++|+|..
T Consensus 14 ~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~ 81 (100)
T 3r27_A 14 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQ 81 (100)
T ss_dssp ---CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSC
T ss_pred ccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCC
Confidence 34566799999999999999999999999999999999999999999999999999999999999975
No 25
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=6.3e-14 Score=130.92 Aligned_cols=74 Identities=20% Similarity=0.234 Sum_probs=67.1
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCc--ce----EEEEeec
Q 001164 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHF--SW----RVKFMDV 639 (1134)
Q Consensus 566 v~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~--~~----RI~f~r~ 639 (1134)
...++++||||||+.+++|+||+++|++||.|.+|++.+.||||||+|.+.++|.+|++.|+|+. +. +|.|++.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence 45689999999999999999999999999999999999999999999999999999999998864 32 7777754
No 26
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=5.4e-14 Score=131.64 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=65.1
Q ss_pred cCceEEeccCCC-ccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCc--ce----EEEEeec
Q 001164 569 ASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHF--SW----RVKFMDV 639 (1134)
Q Consensus 569 ~s~~LWVGnL~~-~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~--~~----RI~f~r~ 639 (1134)
++++||||||+. ++||+||+++|++||.|.+|++.+.||||||+|.+.+||.+|++.|+|+. +. +|.|++.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 789999999999 99999999999999999999999999999999999999999999999864 32 6777753
No 27
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.1e-13 Score=128.81 Aligned_cols=75 Identities=16% Similarity=0.117 Sum_probs=66.2
Q ss_pred cccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCc--ce----EEEEee
Q 001164 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHF--SW----RVKFMD 638 (1134)
Q Consensus 565 dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~--~~----RI~f~r 638 (1134)
..-.++++||||||+.+++|+||+++|++||.|.+|++.+.||||||+|.+.++|.+|++.|+++. +. +|.|++
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 344689999999999999999999999999999999999999999999999999999999987542 32 677775
Q ss_pred c
Q 001164 639 V 639 (1134)
Q Consensus 639 ~ 639 (1134)
.
T Consensus 90 ~ 90 (101)
T 2cq1_A 90 H 90 (101)
T ss_dssp C
T ss_pred c
Confidence 4
No 28
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.46 E-value=9.4e-14 Score=127.64 Aligned_cols=74 Identities=16% Similarity=0.266 Sum_probs=65.1
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEE
Q 001164 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 635 (1134)
Q Consensus 566 v~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~ 635 (1134)
++-.+.+||||||+.++||+||+++|++||+|.++.+.+ .||||||+|.+.+||.+|++.|+|..+. +|+
T Consensus 15 ~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 15 LYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS 94 (99)
T ss_dssp -CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 344567899999999999999999999999999999864 5689999999999999999999999876 777
Q ss_pred Eeec
Q 001164 636 FMDV 639 (1134)
Q Consensus 636 f~r~ 639 (1134)
|+++
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 7664
No 29
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=7.1e-14 Score=133.93 Aligned_cols=64 Identities=17% Similarity=0.298 Sum_probs=60.8
Q ss_pred ccCceEEe--ccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcc
Q 001164 568 SASKQLWL--GSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 568 ~~s~~LWV--GnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
.++++||| |||+.+++|++|+++|++||.|++|++.+.||||||+|.+.+||.+|++.|+|+.+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 46899999 88999999999999999999999999988999999999999999999999999854
No 30
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.6e-13 Score=120.23 Aligned_cols=70 Identities=19% Similarity=0.276 Sum_probs=64.1
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhh-ccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYI-RNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L-~G~~~~----RI~f~ 637 (1134)
..+++||||||+.+++++||+++|++||+|.++.+.++||||||+|.+.++|..|++.| +|..+. +|+|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 56799999999999999999999999999999999999999999999999999999999 887654 55554
No 31
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.43 E-value=1.4e-13 Score=127.33 Aligned_cols=68 Identities=22% Similarity=0.225 Sum_probs=63.4
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
|..||||||...+||++|+++|.+||+|.+|.+..+||||||+|.+.+||..|++.|+|..+. ||+|+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 678999999999999999999999999999999999999999999999999999999998775 55554
No 32
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=1.5e-13 Score=131.07 Aligned_cols=73 Identities=12% Similarity=0.195 Sum_probs=65.6
Q ss_pred cccCceEEeccCCCc-cCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCc--ce----EEEEeec
Q 001164 567 FSASKQLWLGSFGPE-ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHF--SW----RVKFMDV 639 (1134)
Q Consensus 567 ~~~s~~LWVGnL~~~-vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~--~~----RI~f~r~ 639 (1134)
..++++||||||+.+ ++|+||+++|++||.|.+|++.+.||||||+|.+.+||.+|++.|+|+. +. +|.|++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 457999999999998 9999999999999999999999999999999999999999999998754 32 6777653
No 33
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.2e-13 Score=131.21 Aligned_cols=73 Identities=14% Similarity=0.119 Sum_probs=65.6
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccC--cce----EEEEeec
Q 001164 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNH--FSW----RVKFMDV 639 (1134)
Q Consensus 567 ~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~--~~~----RI~f~r~ 639 (1134)
..++++||||||+.+++|+||+++|++||.|.+|++.+.||||||+|++.++|.+|++.|+|. .+. +|.|++.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 357899999999999999999999999999999999999999999999999999999999864 332 7777754
No 34
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=2.5e-13 Score=122.41 Aligned_cols=72 Identities=28% Similarity=0.460 Sum_probs=66.0
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce------EEEEeec
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFMDV 639 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~------RI~f~r~ 639 (1134)
.++++||||||+.+++|+||+++|++||+|+++++.+.||||||+|.+.+||.+|++.|+|..+. +|+|+++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 46799999999999999999999999999999999999999999999999999999999998654 6666654
No 35
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.2e-13 Score=130.45 Aligned_cols=61 Identities=15% Similarity=0.148 Sum_probs=58.6
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccC
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNH 629 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~ 629 (1134)
++++||||||+.++||+||+++|++||.|.+|++.+.||||||+|.+.+||.+|++.|+|.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~ 75 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSV 75 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccC
Confidence 5799999999999999999999999999999999999999999999999999999999864
No 36
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=6.3e-13 Score=120.37 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=69.7
Q ss_pred cccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----
Q 001164 563 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW---- 632 (1134)
Q Consensus 563 a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~---- 632 (1134)
+.+.-..+++||||||+.+++|+||+++|++||+|+.|.+.. .+|||||+|.+.++|.+|++.|+|..+.
T Consensus 5 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 1x5s_A 5 SSGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 84 (102)
T ss_dssp CCCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 334456789999999999999999999999999999999975 4789999999999999999999999876
Q ss_pred EEEEeecc
Q 001164 633 RVKFMDVG 640 (1134)
Q Consensus 633 RI~f~r~~ 640 (1134)
+|+|++..
T Consensus 85 ~v~~a~~~ 92 (102)
T 1x5s_A 85 RVDQAGKS 92 (102)
T ss_dssp EEEEEECC
T ss_pred EEEECCCC
Confidence 88888664
No 37
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=5.4e-13 Score=121.24 Aligned_cols=76 Identities=17% Similarity=0.281 Sum_probs=68.2
Q ss_pred ccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhccCcce----EEE
Q 001164 564 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 635 (1134)
Q Consensus 564 ~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~----~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~ 635 (1134)
+.--..+++||||||+.+++++||+++|++||+|.+|.+.+ .||||||+|.+.++|.+|++.|+|..+. +|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 34446789999999999999999999999999999999876 6799999999999999999999999876 777
Q ss_pred Eeec
Q 001164 636 FMDV 639 (1134)
Q Consensus 636 f~r~ 639 (1134)
|++.
T Consensus 89 ~a~~ 92 (103)
T 2cqi_A 89 WATT 92 (103)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 7765
No 38
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.41 E-value=2.1e-13 Score=123.55 Aligned_cols=64 Identities=20% Similarity=0.230 Sum_probs=61.2
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
.+++||||||+.+++++||+++|++||.|+++.+.+.||||||+|.+.++|..|++.|+|..+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 89 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQ 89 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 4789999999999999999999999999999999999999999999999999999999998664
No 39
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.41 E-value=3.5e-13 Score=121.31 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=64.7
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhccCcce----EEEEee
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~------rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r 638 (1134)
++++||||||+.+++++||+++|++||+|.++.+... +|||||+|.+.++|.+|++.|+|..+. +|+|++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 5899999999999999999999999999999998653 799999999999999999999998775 677665
Q ss_pred c
Q 001164 639 V 639 (1134)
Q Consensus 639 ~ 639 (1134)
.
T Consensus 81 ~ 81 (96)
T 2x1f_A 81 N 81 (96)
T ss_dssp C
T ss_pred C
Confidence 4
No 40
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.41 E-value=3.7e-13 Score=117.60 Aligned_cols=70 Identities=21% Similarity=0.349 Sum_probs=63.4
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
.++++||||||+.+++++||+++|++||+|.++.+.+ .+|||||+|.+.++|..|++.|+|..+. +|+|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 5789999999999999999999999999999999854 5899999999999999999999999765 55554
No 41
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=6.9e-13 Score=118.41 Aligned_cols=73 Identities=23% Similarity=0.324 Sum_probs=66.7
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~------rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
+++++||||||+.+++++||+++|++||+|.++.+.+. +|||||+|.+.++|.+|++.|+|..+. +|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46899999999999999999999999999999999763 689999999999999999999999876 88888
Q ss_pred ecc
Q 001164 638 DVG 640 (1134)
Q Consensus 638 r~~ 640 (1134)
+..
T Consensus 83 ~~~ 85 (95)
T 2dnz_A 83 TER 85 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 654
No 42
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.41 E-value=7.1e-13 Score=122.70 Aligned_cols=98 Identities=13% Similarity=0.179 Sum_probs=80.6
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhccCcce----EEEEeeccC
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 641 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~---~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~~l 641 (1134)
++++||||||+.+++++||+++|++||+|.++.+.. .+|||||+|.+.++|.+|++.|+|..+. +|+|++..-
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANR 86 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCh
Confidence 579999999999999999999999999999999854 6799999999999999999999999876 777765410
Q ss_pred CCCcccccccccccceEEEccCCChhhHHHHHHHHhhccccC
Q 001164 642 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKG 683 (1134)
Q Consensus 642 Ga~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~ 683 (1134)
. -+++.....++++...+.++|...
T Consensus 87 ~-----------------~~~~~~~~~~~~l~~~~~~~g~~~ 111 (115)
T 3lqv_A 87 A-----------------FQKMDTKKKEEQLKLLKEKYGINT 111 (115)
T ss_dssp H-----------------TTTSCHHHHHHHHHHHHHHHCCCC
T ss_pred h-----------------hhhhhHhHhHHHHHHHHHHhCCCC
Confidence 0 145666677777776666666543
No 43
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.41 E-value=3.9e-13 Score=116.97 Aligned_cols=70 Identities=14% Similarity=0.229 Sum_probs=63.3
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhccCcce----EEEEeec
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~------rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~ 639 (1134)
|.+||||||+.+++++||++.|++||+|.++.+.+. +|||||+|.+.++|.+|++.|+|..+. +|++++.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 578999999999999999999999999999998754 899999999999999999999999775 6666543
No 44
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.40 E-value=4.8e-13 Score=117.35 Aligned_cols=72 Identities=21% Similarity=0.349 Sum_probs=63.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~------rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
.++++||||||+.+++++||+++|++||.|.++.+... +|||||+|.+.++|.+|++.|+|..+. +|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 46789999999999999999999999999999998653 699999999999999999999998775 66666
Q ss_pred ec
Q 001164 638 DV 639 (1134)
Q Consensus 638 r~ 639 (1134)
+.
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 45
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=3.9e-13 Score=123.78 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=67.6
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce----EEEEeecc
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~~ 640 (1134)
...++||||||+.++++++|+++|++||.|.+|.+.+.||||||+|.+.++|.+|++.|+|..+. +|+|++..
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999876 77777653
No 46
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4.2e-13 Score=119.57 Aligned_cols=74 Identities=22% Similarity=0.177 Sum_probs=65.3
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEE
Q 001164 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 635 (1134)
Q Consensus 566 v~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~ 635 (1134)
--.++++||||||+.+++++||+++|++||+|+++.+.. .+|||||+|.+.++|.+|++.|+|..+. +|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 346789999999999999999999999999999999863 4789999999999999999999998775 555
Q ss_pred Eeec
Q 001164 636 FMDV 639 (1134)
Q Consensus 636 f~r~ 639 (1134)
|++.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 5544
No 47
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=3.9e-13 Score=121.69 Aligned_cols=75 Identities=20% Similarity=0.321 Sum_probs=67.4
Q ss_pred cccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EE
Q 001164 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RV 634 (1134)
Q Consensus 565 dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI 634 (1134)
..-.++++||||||+.+++++||+++|++||+|++|.+.. .+|||||+|.+.++|.+|++.|+|..+. +|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3446789999999999999999999999999999999854 5899999999999999999999998876 77
Q ss_pred EEeec
Q 001164 635 KFMDV 639 (1134)
Q Consensus 635 ~f~r~ 639 (1134)
+|++.
T Consensus 87 ~~a~~ 91 (102)
T 2cqb_A 87 NLAKP 91 (102)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 77755
No 48
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.40 E-value=3.9e-13 Score=119.98 Aligned_cols=72 Identities=15% Similarity=0.155 Sum_probs=64.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc-----CceEEEEecCHHHHHHHHHhhccCcce----EEEEee
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~-----rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r 638 (1134)
.++++||||||+.+++++||+++|++||+|++|.+.+. +|||||+|.+.+||.+|++.|+|..+. +|+|++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 46799999999999999999999999999999999764 799999999999999999999999876 566654
Q ss_pred c
Q 001164 639 V 639 (1134)
Q Consensus 639 ~ 639 (1134)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 49
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=7e-13 Score=118.00 Aligned_cols=71 Identities=20% Similarity=0.238 Sum_probs=65.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce----EEEEeecc
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~~ 640 (1134)
.++++||||||+.+++++||+++|++||+|+++.+. ||||||+|.+.++|.+|++.|+|..+. +|++++..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 468999999999999999999999999999999997 799999999999999999999998776 77777553
No 50
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.40 E-value=5.5e-13 Score=120.46 Aligned_cols=76 Identities=12% Similarity=0.222 Sum_probs=65.4
Q ss_pred cccccccCceEEeccCCC-ccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 563 AMDIFSASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 563 a~dv~~~s~~LWVGnL~~-~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
.++-..++++||||||+. +++++||+++|++||+|.++.+- ||||||+|.+.++|..|++.|+|..+. +|+++
T Consensus 3 ~~~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 3 EMHNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp ------CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred ccccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 345567899999999999 99999999999999999999984 899999999999999999999999886 88888
Q ss_pred ecc
Q 001164 638 DVG 640 (1134)
Q Consensus 638 r~~ 640 (1134)
+..
T Consensus 81 ~~~ 83 (96)
T 2kvi_A 81 SSN 83 (96)
T ss_dssp ECC
T ss_pred CcC
Confidence 653
No 51
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.39 E-value=4.8e-13 Score=125.44 Aligned_cols=65 Identities=12% Similarity=0.134 Sum_probs=60.3
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
.+.++||||||+.+++|++|+++|++||+|.+|.+.. +||||||+|.+.+||.+|++.|+|+.+.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~ 74 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM 74 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4689999999999999999999999999999999853 5799999999999999999999999765
No 52
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=5.1e-13 Score=124.72 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=66.3
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce----EEEEeec
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~ 639 (1134)
.+++||||||+.+++++||+++|++||+|.+|.+.+.||||||+|.+.+||..|++.|+|..+. +|+|++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 3689999999999999999999999999999999999999999999999999999999999876 7777765
No 53
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=7.9e-13 Score=120.44 Aligned_cols=74 Identities=19% Similarity=0.318 Sum_probs=67.2
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc-------CceEEEEecCHHHHHHHHHhh-ccCcce----EE
Q 001164 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-------KGFALVEYINIIDAIRAREYI-RNHFSW----RV 634 (1134)
Q Consensus 567 ~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~-------rgfAFVeFr~i~DAi~A~~~L-~G~~~~----RI 634 (1134)
-.++++||||||+.+++++||+++|++||+|.+|.+.+. +|||||+|.+.++|.+|++.| +|..+. +|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 357899999999999999999999999999999999765 899999999999999999999 888876 78
Q ss_pred EEeecc
Q 001164 635 KFMDVG 640 (1134)
Q Consensus 635 ~f~r~~ 640 (1134)
+|++..
T Consensus 92 ~~a~~~ 97 (107)
T 2cph_A 92 EWADSE 97 (107)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 888653
No 54
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=4.8e-13 Score=119.66 Aligned_cols=72 Identities=19% Similarity=0.331 Sum_probs=65.6
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceE-EEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEE
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHF-FFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v-~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f 636 (1134)
+++++||||||+.+++++||+++|++||+|.++ .+.. .+|||||+|.+.++|..|++.|+|..+. +|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 468999999999999999999999999999999 8865 3799999999999999999999999876 7777
Q ss_pred eec
Q 001164 637 MDV 639 (1134)
Q Consensus 637 ~r~ 639 (1134)
++.
T Consensus 83 a~~ 85 (96)
T 1x5t_A 83 AFK 85 (96)
T ss_dssp SCC
T ss_pred ecc
Confidence 755
No 55
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=4.5e-13 Score=120.51 Aligned_cols=73 Identities=19% Similarity=0.281 Sum_probs=65.6
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec---------cCceEEEEecCHHHHHHHHHhhccCcce----EE
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---------IKGFALVEYINIIDAIRAREYIRNHFSW----RV 634 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~---------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI 634 (1134)
.++++||||||+.+++|+||+++|++||+|++|.+.. .+|||||+|.+.++|.+|++.|+|..+. +|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4689999999999999999999999999999999873 4689999999999999999999999876 67
Q ss_pred EEeecc
Q 001164 635 KFMDVG 640 (1134)
Q Consensus 635 ~f~r~~ 640 (1134)
++++..
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 776553
No 56
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.3e-12 Score=118.83 Aligned_cols=74 Identities=24% Similarity=0.273 Sum_probs=67.0
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc----CceEEEEecCHHHHHHHHHhhccCcce----EEEEee
Q 001164 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI----KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1134)
Q Consensus 567 ~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~----rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r 638 (1134)
-..+++||||||+.+++++||+++|++||+|++|.+... +|||||+|.+.++|.+|++.|+|..+. +|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 356899999999999999999999999999999999764 899999999999999999999999876 777776
Q ss_pred cc
Q 001164 639 VG 640 (1134)
Q Consensus 639 ~~ 640 (1134)
..
T Consensus 92 ~~ 93 (103)
T 2cq3_A 92 AR 93 (103)
T ss_dssp SS
T ss_pred cC
Confidence 53
No 57
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.38 E-value=9.9e-13 Score=119.84 Aligned_cols=72 Identities=11% Similarity=0.186 Sum_probs=64.1
Q ss_pred ccccCceEEeccCCC-ccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce----EEEEeec
Q 001164 566 IFSASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1134)
Q Consensus 566 v~~~s~~LWVGnL~~-~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~ 639 (1134)
-..++++||||||+. ++++++|+++|++||.|.++.+ .||||||+|.+.++|.+|++.|+|..+. +|+|++.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 345789999999998 9999999999999999999998 4899999999999999999999999774 6666543
No 58
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.2e-12 Score=120.26 Aligned_cols=73 Identities=21% Similarity=0.216 Sum_probs=66.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhccCcce----EEEEeecc
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~---~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~~ 640 (1134)
.++++||||||+.+++|+||+++|++||+|.++.+.. .||||||+|.+.+||.+|++.|+|..+. +|+|++..
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 3579999999999999999999999999999999965 5789999999999999999999999876 77777653
No 59
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=8.2e-13 Score=119.55 Aligned_cols=73 Identities=16% Similarity=0.100 Sum_probs=66.1
Q ss_pred cccCceEEeccCCCccCHHHHH----HHhhccCCcceEEEecc---CceEEEEecCHHHHHHHHHhhccCcce----EEE
Q 001164 567 FSASKQLWLGSFGPEASEAHIR----FQIDRFGPLEHFFFFPI---KGFALVEYINIIDAIRAREYIRNHFSW----RVK 635 (1134)
Q Consensus 567 ~~~s~~LWVGnL~~~vte~dL~----~~F~~yGpLe~v~~~~~---rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~ 635 (1134)
+...++||||||+.+++|+||+ ++|++||+|.+|.+... ||||||+|.+.++|.+|++.|+|..+. +|+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4567899999999999999999 99999999999999764 899999999999999999999999876 677
Q ss_pred Eeec
Q 001164 636 FMDV 639 (1134)
Q Consensus 636 f~r~ 639 (1134)
+++.
T Consensus 86 ~a~~ 89 (96)
T 2dgx_A 86 LATG 89 (96)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 6654
No 60
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.37 E-value=9.4e-13 Score=115.46 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=63.8
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
.+++||||||+.+++++||+++|++||+|.++.+.. .+|||||+|.+.++|.+|++.|+|..+. +|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999843 6899999999999999999999999876 66666
Q ss_pred ec
Q 001164 638 DV 639 (1134)
Q Consensus 638 r~ 639 (1134)
++
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 61
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.37 E-value=1e-12 Score=119.51 Aligned_cols=72 Identities=22% Similarity=0.346 Sum_probs=64.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc-----CceEEEEecCHHHHHHHHHhhccCcce-------EEE
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFSW-------RVK 635 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~-----rgfAFVeFr~i~DAi~A~~~L~G~~~~-------RI~ 635 (1134)
.++++||||||+.+++|+||+++|++||.|.+|.+... +|||||+|.+.++|.+|++.|+|..+. +|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 45899999999999999999999999999999999865 899999999999999999999998542 566
Q ss_pred Eeec
Q 001164 636 FMDV 639 (1134)
Q Consensus 636 f~r~ 639 (1134)
|++.
T Consensus 93 ~a~~ 96 (105)
T 2dnh_A 93 FADT 96 (105)
T ss_dssp ESCS
T ss_pred ECcc
Confidence 6654
No 62
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.1e-12 Score=119.08 Aligned_cols=72 Identities=15% Similarity=0.219 Sum_probs=66.6
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhccCcce----EEEEeec
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~----~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~ 639 (1134)
..+++||||||+.+++++||+++|++||.|.++.+.. .+|||||+|.+.++|.+|++.|+|..+. +|+|++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 4789999999999999999999999999999999984 5899999999999999999999999876 7888765
No 63
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.4e-12 Score=116.44 Aligned_cols=71 Identities=23% Similarity=0.351 Sum_probs=64.9
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce----EEEEeecc
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~~ 640 (1134)
..+++||||||+.+++++||+++|++||+|+++.+. ++||||+|.+.++|.+|++.|+|..+. +|++++..
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 468999999999999999999999999999999987 579999999999999999999999876 77777553
No 64
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.3e-12 Score=116.17 Aligned_cols=71 Identities=17% Similarity=0.221 Sum_probs=65.0
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce----EEEEeecc
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~~ 640 (1134)
..+++||||||+.+++++||+.+|++||.|.++.+. ++||||+|.+.++|.+|++.|+|..+. +|++++..
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 468999999999999999999999999999999987 579999999999999999999999876 77777653
No 65
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.37 E-value=1.5e-12 Score=122.43 Aligned_cols=73 Identities=19% Similarity=0.373 Sum_probs=66.9
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc-----CceEEEEecCHHHHHHHHHhhccCcce----EEEEee
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~-----rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r 638 (1134)
..+++||||||+.+++++||+++|++||.|.+|.+... +|||||+|.+.+||.+|++.|+|..+. +|++++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45789999999999999999999999999999999864 599999999999999999999999886 888886
Q ss_pred cc
Q 001164 639 VG 640 (1134)
Q Consensus 639 ~~ 640 (1134)
..
T Consensus 85 ~~ 86 (116)
T 2fy1_A 85 KP 86 (116)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 66
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.4e-12 Score=118.86 Aligned_cols=73 Identities=23% Similarity=0.292 Sum_probs=65.4
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEE
Q 001164 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1134)
Q Consensus 567 ~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f 636 (1134)
-..+++||||||+.++++++|+++|++||+|.+|.+.. .+|||||+|.+.++|.+|++.|+|..+. +|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34678999999999999999999999999999999864 3799999999999999999999999775 6777
Q ss_pred eec
Q 001164 637 MDV 639 (1134)
Q Consensus 637 ~r~ 639 (1134)
++.
T Consensus 100 a~~ 102 (106)
T 1p27_B 100 CFV 102 (106)
T ss_dssp SEE
T ss_pred ecC
Confidence 654
No 67
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.3e-12 Score=116.51 Aligned_cols=65 Identities=11% Similarity=0.231 Sum_probs=60.6
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
.++++||||||+.+++++||+++|++||+|.++.+.. .+|||||+|.+.++|..|++.|+|..+.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 84 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF 84 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 5689999999999999999999999999999999964 4789999999999999999999998765
No 68
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.36 E-value=1.1e-12 Score=125.32 Aligned_cols=73 Identities=18% Similarity=0.313 Sum_probs=66.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
..+++||||||+.+++|+||+++|++||+|++|.+.. .||||||+|.+.+||.+|++.|+|..++ +|+|+
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4579999999999999999999999999999999864 3799999999999999999999999886 77777
Q ss_pred ecc
Q 001164 638 DVG 640 (1134)
Q Consensus 638 r~~ 640 (1134)
+..
T Consensus 120 ~~~ 122 (139)
T 1u6f_A 120 ASG 122 (139)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 69
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.36 E-value=8.9e-13 Score=117.03 Aligned_cols=72 Identities=14% Similarity=0.043 Sum_probs=65.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhccCcce----EEEEeec
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~----~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~ 639 (1134)
.++++||||||+.+++++||+++|++||+|.++.+.+ .||||||+|.+.++|.+|++.|+|..+. +|++.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4679999999999999999999999999999999875 6899999999999999999999999875 6777755
No 70
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=3.9e-13 Score=117.99 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=60.1
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhccCcce
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~------rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
+++++||||||+.+++++||+++|++||+|.++.+... +|||||+|.+.++|..|++.|+|+.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ 73 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe
Confidence 46899999999999999999999999999999998653 799999999999999999999998654
No 71
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.36 E-value=1.1e-12 Score=119.43 Aligned_cols=72 Identities=19% Similarity=0.345 Sum_probs=65.3
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcc---e----EE
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFS---W----RV 634 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~---~----RI 634 (1134)
..+++||||||+.+++|+||+++|++||+|.+|.+.. .||||||+|.+.++|.+|++.|+|..+ . +|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 4578999999999999999999999999999999865 579999999999999999999999876 3 78
Q ss_pred EEeec
Q 001164 635 KFMDV 639 (1134)
Q Consensus 635 ~f~r~ 639 (1134)
++++.
T Consensus 91 ~~a~~ 95 (106)
T 2dgp_A 91 KPADS 95 (106)
T ss_dssp EECCC
T ss_pred EECCc
Confidence 87765
No 72
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=7e-13 Score=118.42 Aligned_cols=71 Identities=23% Similarity=0.282 Sum_probs=63.6
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCC-cceEEEeccCceEEEEecCHHHHHHHHHhhcc-Ccce----EEEEeec
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGP-LEHFFFFPIKGFALVEYINIIDAIRAREYIRN-HFSW----RVKFMDV 639 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGp-Le~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G-~~~~----RI~f~r~ 639 (1134)
..+++||||||+.+++|+||+++|++||. |+.+.+ ..+|||||+|.+.+||.+|++.|+| ..+. +|++++.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 35799999999999999999999999999 777766 6799999999999999999999999 6665 7777765
No 73
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.4e-12 Score=117.48 Aligned_cols=65 Identities=18% Similarity=0.313 Sum_probs=59.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcc-eEEEecc------CceEEEEecCHHHHHHHHHhhccCcce
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLE-HFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe-~v~~~~~------rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
.++++||||||+.+++|+||+++|++||+|. ++.+.+. +|||||+|.+.+||.+|++.|+|..+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 78 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP 78 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC
Confidence 4689999999999999999999999999999 9998654 499999999999999999999998654
No 74
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=1.1e-12 Score=118.05 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=65.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
.++++||||||+.+++++||+++|++||+|+++.+.. .+|||||+|.+.++|.+|++.|+|..+. +|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3689999999999999999999999999999999865 4599999999999999999999998876 67777
Q ss_pred ec
Q 001164 638 DV 639 (1134)
Q Consensus 638 r~ 639 (1134)
+.
T Consensus 86 ~~ 87 (99)
T 1whw_A 86 TI 87 (99)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 75
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.36 E-value=9.6e-13 Score=117.93 Aligned_cols=83 Identities=16% Similarity=0.103 Sum_probs=71.2
Q ss_pred ecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe-ccCceEEEEecCHHHHHHHHHhhccCcce---
Q 001164 557 FDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-PIKGFALVEYINIIDAIRAREYIRNHFSW--- 632 (1134)
Q Consensus 557 ~~g~~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~-~~rgfAFVeFr~i~DAi~A~~~L~G~~~~--- 632 (1134)
++.+|..++--.++++||||||+.+++++||+++|++||.|..+... ..+|||||+|.+.++|..|++.|+|..+.
T Consensus 3 ~~~~p~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 82 (96)
T 1fjc_A 3 MLEDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 82 (96)
T ss_dssp CSSCTTTTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred cccCccccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34566677777889999999999999999999999999999988222 27899999999999999999999998775
Q ss_pred -EEEEeec
Q 001164 633 -RVKFMDV 639 (1134)
Q Consensus 633 -RI~f~r~ 639 (1134)
+|++++.
T Consensus 83 l~v~~a~~ 90 (96)
T 1fjc_A 83 VSLYYTGE 90 (96)
T ss_dssp EEEEECSS
T ss_pred EEEEEcCC
Confidence 6777655
No 76
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-12 Score=117.71 Aligned_cols=70 Identities=16% Similarity=0.263 Sum_probs=62.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcce--------EEEec------cCceEEEEecCHHHHHHHHHhhccCcce-
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH--------FFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW- 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~--------v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~- 632 (1134)
.++++||||||+.+++++||++.|++||.|.. +.+.. .||||||+|.+.++|..|++.|+|..+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45799999999999999999999999999999 88764 3689999999999999999999998765
Q ss_pred ---EEEEe
Q 001164 633 ---RVKFM 637 (1134)
Q Consensus 633 ---RI~f~ 637 (1134)
+|+++
T Consensus 91 ~~l~V~~A 98 (99)
T 2la6_A 91 NPIKVSFA 98 (99)
T ss_dssp SBCEEEEC
T ss_pred cEEEEEec
Confidence 55543
No 77
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.3e-12 Score=121.15 Aligned_cols=72 Identities=25% Similarity=0.297 Sum_probs=65.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc----CceEEEEecCHHHHHHHHHhhccCcce----EEEEeec
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI----KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~----rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~ 639 (1134)
..+++||||||+.+++|+||+++|++||+|+++.+... ||||||+|.+.++|.+|++.|+|..+. +|++++.
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 46899999999999999999999999999999999754 899999999999999999999999876 6666544
No 78
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.7e-12 Score=119.74 Aligned_cols=77 Identities=12% Similarity=0.175 Sum_probs=68.5
Q ss_pred cccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc-----CceEEEEecCHHHHHHHHHhhccCcce----E
Q 001164 563 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFSW----R 633 (1134)
Q Consensus 563 a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~-----rgfAFVeFr~i~DAi~A~~~L~G~~~~----R 633 (1134)
+.+--.++++||||||+.+++++||+++|++||.|.+|.+... +|||||+|.+.++|.+|++.|+|..+. +
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 8 ALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 3444567899999999999999999999999999999998764 799999999999999999999999876 7
Q ss_pred EEEeec
Q 001164 634 VKFMDV 639 (1134)
Q Consensus 634 I~f~r~ 639 (1134)
|++.+.
T Consensus 88 v~~a~~ 93 (114)
T 2do0_A 88 VKMDER 93 (114)
T ss_dssp EEECSC
T ss_pred EEEccc
Confidence 777754
No 79
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.35 E-value=1.3e-12 Score=121.54 Aligned_cols=71 Identities=21% Similarity=0.355 Sum_probs=64.6
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce----EEEEeec
Q 001164 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1134)
Q Consensus 567 ~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~ 639 (1134)
-..+++||||||+.+++++||+++|++||.|+++.+. ||||||+|.+.+||.+|++.|+|..+. +|+|++.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3568999999999999999999999999999999998 899999999999999999999999775 5666543
No 80
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.35 E-value=1.4e-12 Score=120.71 Aligned_cols=73 Identities=21% Similarity=0.351 Sum_probs=66.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~------rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
..+++||||||+.+++++||+++|++||.|++|.+.+. +|||||+|.+.++|.+|++.|+|..+. +|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 46899999999999999999999999999999999764 699999999999999999999998876 78887
Q ss_pred ecc
Q 001164 638 DVG 640 (1134)
Q Consensus 638 r~~ 640 (1134)
+..
T Consensus 93 ~~~ 95 (115)
T 2dgo_A 93 TRK 95 (115)
T ss_dssp SCC
T ss_pred cCC
Confidence 653
No 81
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.5e-12 Score=120.15 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=69.3
Q ss_pred CCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcc--------eEEEecc------CceEEEEecCHHHHHHHHH
Q 001164 559 EDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLE--------HFFFFPI------KGFALVEYINIIDAIRARE 624 (1134)
Q Consensus 559 g~~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe--------~v~~~~~------rgfAFVeFr~i~DAi~A~~ 624 (1134)
|.|...+--..+++||||||+.+++++||+++|++||.|. .|.+... +|||||+|.+.++|.+|++
T Consensus 4 g~p~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 83 (113)
T 2cpe_A 4 GSSGDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVE 83 (113)
T ss_dssp SCCCCCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHH
T ss_pred CCCCCcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHH
Confidence 3444444456789999999999999999999999999999 5888653 7899999999999999999
Q ss_pred hhccCcce----EEEEeec
Q 001164 625 YIRNHFSW----RVKFMDV 639 (1134)
Q Consensus 625 ~L~G~~~~----RI~f~r~ 639 (1134)
.|+|..+. +|++++.
T Consensus 84 ~l~g~~~~g~~l~V~~a~~ 102 (113)
T 2cpe_A 84 WFDGKDFQGSKLKVSLARK 102 (113)
T ss_dssp HHTTCEETTEECEEECSSC
T ss_pred HcCCCccCCCEEEEEECCC
Confidence 99999876 6777654
No 82
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.7e-12 Score=117.38 Aligned_cols=72 Identities=17% Similarity=0.194 Sum_probs=64.6
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhccCcce----EEEEee
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r 638 (1134)
.++++||||||+.+++++||+++|++||+|.++.+.. .+|||||+|.+.++|.+|++.|+|..+. +|++++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 3578999999999999999999999999999999975 3599999999999999999999998776 666665
Q ss_pred c
Q 001164 639 V 639 (1134)
Q Consensus 639 ~ 639 (1134)
+
T Consensus 95 ~ 95 (100)
T 2do4_A 95 S 95 (100)
T ss_dssp C
T ss_pred C
Confidence 4
No 83
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.34 E-value=1.4e-12 Score=116.90 Aligned_cols=73 Identities=12% Similarity=0.330 Sum_probs=65.7
Q ss_pred cccCceEEeccCCCccCHHHHH----HHhhccCCcceEEEe---ccCceEEEEecCHHHHHHHHHhhccCcce----EEE
Q 001164 567 FSASKQLWLGSFGPEASEAHIR----FQIDRFGPLEHFFFF---PIKGFALVEYINIIDAIRAREYIRNHFSW----RVK 635 (1134)
Q Consensus 567 ~~~s~~LWVGnL~~~vte~dL~----~~F~~yGpLe~v~~~---~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~ 635 (1134)
-.++++||||||+.+++++||+ ++|++||.|.++.+. ..+|||||+|.+.++|..|++.|+|..+. +|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3678999999999999999999 999999999999987 47899999999999999999999998775 666
Q ss_pred Eeec
Q 001164 636 FMDV 639 (1134)
Q Consensus 636 f~r~ 639 (1134)
|++.
T Consensus 85 ~a~~ 88 (97)
T 1nu4_A 85 YAKT 88 (97)
T ss_dssp ECSS
T ss_pred EccC
Confidence 6654
No 84
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.34 E-value=1.5e-12 Score=120.12 Aligned_cols=71 Identities=15% Similarity=0.232 Sum_probs=65.2
Q ss_pred cccCceEEeccCCCc-cCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce----EEEEeec
Q 001164 567 FSASKQLWLGSFGPE-ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1134)
Q Consensus 567 ~~~s~~LWVGnL~~~-vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~ 639 (1134)
-..+++||||||+.+ ++|+||+++|++||+|+++.+ .+|||||+|.+.++|.+|++.|+|..+. +|++++.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 345799999999999 999999999999999999999 7899999999999999999999999876 7777753
No 85
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.34 E-value=1.8e-12 Score=125.23 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=64.8
Q ss_pred ccCceEEeccCCCccCHHHHH----HHhhccCCcceEEEe---ccCceEEEEecCHHHHHHHHHhhccCcce----EEEE
Q 001164 568 SASKQLWLGSFGPEASEAHIR----FQIDRFGPLEHFFFF---PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~----~~F~~yGpLe~v~~~---~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f 636 (1134)
.++++||||||+.++++++|+ ++|++||+|.+|.+. ..||||||+|.+.++|..|++.|+|..+. +|+|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 568999999999999999976 699999999999985 37899999999999999999999999875 7777
Q ss_pred eec
Q 001164 637 MDV 639 (1134)
Q Consensus 637 ~r~ 639 (1134)
++.
T Consensus 107 a~~ 109 (127)
T 2a3j_A 107 SET 109 (127)
T ss_dssp CCC
T ss_pred ccC
Confidence 754
No 86
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=2.4e-12 Score=116.23 Aligned_cols=71 Identities=18% Similarity=0.318 Sum_probs=64.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
.++++||||||+.+++++||+++|++||.|.++.+.. .||||||+|.+.++|.+|++ |+|..+. +|+++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 4679999999999999999999999999999999964 57999999999999999998 9998876 78887
Q ss_pred ec
Q 001164 638 DV 639 (1134)
Q Consensus 638 r~ 639 (1134)
+.
T Consensus 87 ~~ 88 (99)
T 2dgs_A 87 EP 88 (99)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 87
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.34 E-value=2.5e-12 Score=120.77 Aligned_cols=77 Identities=22% Similarity=0.227 Sum_probs=68.8
Q ss_pred ccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhccCcce----E
Q 001164 564 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----R 633 (1134)
Q Consensus 564 ~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~------rgfAFVeFr~i~DAi~A~~~L~G~~~~----R 633 (1134)
-+.-.++++||||||+.++|++||+++|++||.|.+|.+... +|||||+|.+.++|.+|++.|+|..+. +
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 344456899999999999999999999999999999998654 899999999999999999999999886 8
Q ss_pred EEEeecc
Q 001164 634 VKFMDVG 640 (1134)
Q Consensus 634 I~f~r~~ 640 (1134)
|+|+...
T Consensus 96 v~~a~~~ 102 (126)
T 3ex7_B 96 VDWCFVR 102 (126)
T ss_dssp EEESEES
T ss_pred EEEecCC
Confidence 8888653
No 88
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.34 E-value=3.1e-12 Score=123.92 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=65.1
Q ss_pred cccccCce--EEeccCCCccCHHHHHHHhhccCCcceEEEeccCce-EEEEecCHHHHHHHHHhhccCcce------EEE
Q 001164 565 DIFSASKQ--LWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGF-ALVEYINIIDAIRAREYIRNHFSW------RVK 635 (1134)
Q Consensus 565 dv~~~s~~--LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgf-AFVeFr~i~DAi~A~~~L~G~~~~------RI~ 635 (1134)
|--.+++. ||||||+..+++++|+++|++||.|.+|+++..+|| |||+|.+.+||.+|+++|+|+.+. ||.
T Consensus 18 ~~~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 18 DPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp CCCCCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred CCCCCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 44456655 579999999999999999999999999999875697 999999999999999999999873 677
Q ss_pred Eeec
Q 001164 636 FMDV 639 (1134)
Q Consensus 636 f~r~ 639 (1134)
|++.
T Consensus 98 ~Ak~ 101 (124)
T 2e5i_A 98 YARP 101 (124)
T ss_dssp CCSC
T ss_pred EecC
Confidence 7754
No 89
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2.2e-12 Score=116.50 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=62.6
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEE-eccCceEEEEecCHHHHHHHHHhhccCcce----EEEEeec
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF-FPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~-~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~ 639 (1134)
..+++||||||+.+++++||+++|++||.|+...+ -..+|||||+|.+.+||..|++.|+|..+. +|++++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 45789999999999999999999999999973322 358999999999999999999999999876 6776654
No 90
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.6e-12 Score=119.03 Aligned_cols=72 Identities=21% Similarity=0.329 Sum_probs=64.6
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCC-cceEEEe-------ccCceEEEEecCHHHHHHHHHhhc--cCcce----EE
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGP-LEHFFFF-------PIKGFALVEYINIIDAIRAREYIR--NHFSW----RV 634 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGp-Le~v~~~-------~~rgfAFVeFr~i~DAi~A~~~L~--G~~~~----RI 634 (1134)
++++||||||+.+++++||+++|++||. |.++.+. ..||||||+|.+.++|..|++.|+ |..++ +|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 5789999999999999999999999999 9999997 578999999999999999999996 45554 78
Q ss_pred EEeecc
Q 001164 635 KFMDVG 640 (1134)
Q Consensus 635 ~f~r~~ 640 (1134)
+++++.
T Consensus 87 ~~a~~~ 92 (109)
T 2dis_A 87 DWAEPE 92 (109)
T ss_dssp EESCSS
T ss_pred EEcCCC
Confidence 888653
No 91
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.33 E-value=2.6e-12 Score=118.07 Aligned_cols=72 Identities=26% Similarity=0.320 Sum_probs=65.3
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~------rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
..+++||||||+.++++++|+++|++||.|.+|.+... +|||||+|.+.++|..|++.|+|..+. +|+|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999998653 699999999999999999999999876 67776
Q ss_pred ec
Q 001164 638 DV 639 (1134)
Q Consensus 638 r~ 639 (1134)
+.
T Consensus 104 ~~ 105 (110)
T 1oo0_B 104 FV 105 (110)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 92
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.5e-12 Score=118.31 Aligned_cols=72 Identities=17% Similarity=0.278 Sum_probs=65.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
.++++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.++|.+|++.|+|..+. +|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 4689999999999999999999999999999999865 3689999999999999999999999876 77777
Q ss_pred ec
Q 001164 638 DV 639 (1134)
Q Consensus 638 r~ 639 (1134)
+.
T Consensus 93 ~~ 94 (103)
T 2cq0_A 93 KP 94 (103)
T ss_dssp SC
T ss_pred CC
Confidence 55
No 93
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.33 E-value=1.9e-12 Score=118.12 Aligned_cols=71 Identities=18% Similarity=0.274 Sum_probs=65.2
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce----EEEEeec
Q 001164 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1134)
Q Consensus 567 ~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~ 639 (1134)
..++++||||||+.+++++||+++|++||.|.+|.+. |+||||+|.+.++|.+|++.|+|..+. +|+|++.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 3578999999999999999999999999999999886 689999999999999999999999876 7777754
No 94
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=1.8e-12 Score=117.79 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=66.1
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
.++++||||||+.+++++||+++|++||+|++|.+.. .+|||||+|.+.++|.+|++.|+|..+. +|+++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 4689999999999999999999999999999999864 4799999999999999999999999876 78887
Q ss_pred ec
Q 001164 638 DV 639 (1134)
Q Consensus 638 r~ 639 (1134)
+.
T Consensus 91 ~~ 92 (103)
T 2dnm_A 91 RY 92 (103)
T ss_dssp SS
T ss_pred Cc
Confidence 65
No 95
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.33 E-value=1.8e-12 Score=113.66 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=60.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhcc----C-------CcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRF----G-------PLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~y----G-------pLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
.++++||||||+.+++++||++.|++| | +|.++++.++||||||+|.+.++|.+|+ .|+|..+.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 468999999999999999999999999 8 9999999999999999999999999999 99998765
No 96
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=2.5e-12 Score=117.87 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=65.1
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhc------cCcce--
Q 001164 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIR------NHFSW-- 632 (1134)
Q Consensus 567 ~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~------G~~~~-- 632 (1134)
..++++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.++|.+|++.|+ |..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 35689999999999999999999999999999999873 58999999999999999999999 87765
Q ss_pred --EEEEeec
Q 001164 633 --RVKFMDV 639 (1134)
Q Consensus 633 --RI~f~r~ 639 (1134)
+|++++.
T Consensus 92 ~l~v~~a~~ 100 (111)
T 1x4h_A 92 QLKVDLAVT 100 (111)
T ss_dssp EEEEECCCC
T ss_pred EEEEEECCC
Confidence 6666644
No 97
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.5e-12 Score=118.07 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=64.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~------rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
..+++||||||+.+++++||+++|++||.|.++.+... +|||||+|.+.++|..|++.|+|..+. +|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 45799999999999999999999999999999998753 799999999999999999999998775 66666
Q ss_pred ec
Q 001164 638 DV 639 (1134)
Q Consensus 638 r~ 639 (1134)
+.
T Consensus 86 ~~ 87 (104)
T 1p1t_A 86 AS 87 (104)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 98
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.32 E-value=2.5e-12 Score=119.24 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=65.1
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~------rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
..+++||||||+.+++++||+++|++||.|.+|.+... ||||||+|.+.++|.+|++.|+|..+. +|+|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 46799999999999999999999999999999998653 489999999999999999999999876 77777
Q ss_pred ec
Q 001164 638 DV 639 (1134)
Q Consensus 638 r~ 639 (1134)
+.
T Consensus 103 ~~ 104 (115)
T 2cpz_A 103 RS 104 (115)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 99
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.32 E-value=1.1e-12 Score=118.36 Aligned_cols=70 Identities=26% Similarity=0.349 Sum_probs=60.6
Q ss_pred CceEEeccCCCccCHHHHHHHhhccC-CcceEEEec------cCceEEEEecCHHHHHHHHHhhccCc-ce----EEEEe
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFG-PLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHF-SW----RVKFM 637 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yG-pLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~-~~----RI~f~ 637 (1134)
|+.||||||+.++||+||+++|++|| .|.+|.+.+ +||||||+|.+.+||.+|++.|++.. +. +|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 68999999999999999999999999 899998743 68999999999999999999986543 32 66666
Q ss_pred ec
Q 001164 638 DV 639 (1134)
Q Consensus 638 r~ 639 (1134)
++
T Consensus 81 ~~ 82 (91)
T 2lxi_A 81 DP 82 (91)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 100
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=2.4e-12 Score=116.27 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=64.1
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce----EEEEeec
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~ 639 (1134)
.++++|||||| +++++||+++|++||+|.++.+-+.||||||+|.+.++|.+|++.|+|..+. +|+|++.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 46799999997 9999999999999999999999889999999999999999999999999875 6666654
No 101
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=3.8e-12 Score=115.76 Aligned_cols=72 Identities=18% Similarity=0.245 Sum_probs=65.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
.++++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.++|..|++.|+|..+. +|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 5689999999999999999999999999999999865 4689999999999999999999998876 78877
Q ss_pred ec
Q 001164 638 DV 639 (1134)
Q Consensus 638 r~ 639 (1134)
+.
T Consensus 93 ~~ 94 (105)
T 1x5u_A 93 SA 94 (105)
T ss_dssp TT
T ss_pred CC
Confidence 55
No 102
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=3.2e-12 Score=115.57 Aligned_cols=73 Identities=23% Similarity=0.310 Sum_probs=65.3
Q ss_pred cccccCceEEeccCCCccCHHHHHHHhhcc--CCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce----EEEEee
Q 001164 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRF--GPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1134)
Q Consensus 565 dv~~~s~~LWVGnL~~~vte~dL~~~F~~y--GpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r 638 (1134)
+...++++||||||+.+++++||+++|++| |.|.++.+ .||||||+|.+.++|.+|++.|+|..+. +|+|++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK--IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE--CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE--eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 456789999999999999999999999999 88888876 4799999999999999999999999876 677665
Q ss_pred c
Q 001164 639 V 639 (1134)
Q Consensus 639 ~ 639 (1134)
.
T Consensus 88 ~ 88 (99)
T 2cpd_A 88 P 88 (99)
T ss_dssp C
T ss_pred C
Confidence 5
No 103
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=3.1e-12 Score=118.22 Aligned_cols=64 Identities=9% Similarity=0.163 Sum_probs=59.7
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhccCcc
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
..+++||||||+.++++++|+++|++||.|.++.+.. .||||||+|.+.++|..|++.|+|+.+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 91 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFI 91 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3568999999999999999999999999999999875 479999999999999999999999976
No 104
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.32 E-value=1.7e-12 Score=120.67 Aligned_cols=65 Identities=17% Similarity=0.116 Sum_probs=60.3
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
..+++||||||+.+++|+||+++|++||.|.++.+.+ .||||||+|.+.+||..|++.|+|..+.
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 108 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG 108 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4679999999999999999999999999999999964 3799999999999999999999998765
No 105
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.32 E-value=1.7e-12 Score=113.59 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=57.5
Q ss_pred CceEEeccCCCcc------CHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhccCcc
Q 001164 570 SKQLWLGSFGPEA------SEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 570 s~~LWVGnL~~~v------te~dL~~~F~~yGpLe~v~~~~----~rgfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
+++||||||+.++ ++++|+++|++||+|.++.+.+ +||||||+|.+.++|.+|++.|+|..+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 72 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 72 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCccc
Confidence 5799999999999 7899999999999999999863 589999999999999999999999854
No 106
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.32 E-value=3e-12 Score=116.83 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=64.2
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 567 ~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
..++++||||||+.+++|+||+++|++||+|.+|.+.. .+|||||+|.+.+||.+|++.|+|..+. +|+|+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 36789999999999999999999999999999999874 4899999999999999999999999775 55554
No 107
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.31 E-value=1.3e-12 Score=116.56 Aligned_cols=70 Identities=10% Similarity=-0.055 Sum_probs=60.9
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEee
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r 638 (1134)
.+++||||||+.+++++||+++|++||.|.++.+.. .+|||||+|.+.+||.+|++.|+|..+. +|+|..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 468999999999999999999999999999766542 5799999999999999999999999775 555443
No 108
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.31 E-value=5.7e-12 Score=118.53 Aligned_cols=74 Identities=18% Similarity=0.133 Sum_probs=66.7
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhccCcce----EEEE
Q 001164 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1134)
Q Consensus 566 v~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f 636 (1134)
-..++++||||||+.+++|+||+++|++||.|.+|.+.. .+|||||+|.+.+||..|++.|+|..+. +|++
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 446789999999999999999999999999999999976 5799999999999999999999998776 6666
Q ss_pred eec
Q 001164 637 MDV 639 (1134)
Q Consensus 637 ~r~ 639 (1134)
+..
T Consensus 111 a~~ 113 (124)
T 2kt5_A 111 VAS 113 (124)
T ss_dssp ECC
T ss_pred eCC
Confidence 644
No 109
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.31 E-value=2e-12 Score=120.04 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=63.9
Q ss_pred cCceEEeccCCCccCHHHHH---HHhhccCCcceEEEec---------cCceEEEEecCHHHHHHHHHhhccCcce----
Q 001164 569 ASKQLWLGSFGPEASEAHIR---FQIDRFGPLEHFFFFP---------IKGFALVEYINIIDAIRAREYIRNHFSW---- 632 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~---~~F~~yGpLe~v~~~~---------~rgfAFVeFr~i~DAi~A~~~L~G~~~~---- 632 (1134)
..++||||||+.+++|+||+ ++|++||+|.++.+.+ +||||||+|.+.+||.+|++.|+|..+.
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 47899999999999999999 9999999999999974 3479999999999999999999999876
Q ss_pred EEEEeec
Q 001164 633 RVKFMDV 639 (1134)
Q Consensus 633 RI~f~r~ 639 (1134)
+|+|+..
T Consensus 94 ~V~~a~~ 100 (111)
T 2cpi_A 94 KASLGTT 100 (111)
T ss_dssp EEESCCC
T ss_pred EEEeccc
Confidence 6666654
No 110
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.30 E-value=3.5e-12 Score=124.80 Aligned_cols=69 Identities=16% Similarity=0.293 Sum_probs=63.2
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec-cCce-EEEEecCHHHHHHHHHhhccCcce------EEEEeec
Q 001164 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGF-ALVEYINIIDAIRAREYIRNHFSW------RVKFMDV 639 (1134)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-~rgf-AFVeFr~i~DAi~A~~~L~G~~~~------RI~f~r~ 639 (1134)
-.||||||+..+||++|+++|++||.|.+|+++. .||| |||+|.+.+||.+|++.|+|+.+. ||+|.+.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 3566999999999999999999999999999876 7898 999999999999999999999873 7888875
No 111
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.30 E-value=3.3e-12 Score=118.71 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=63.7
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
.++++||||||+.++++++|+++|++||+|.+|.+.+ .+|||||+|.+.++|..|++.|+|..+. +|+++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4678999999999999999999999999999999864 4789999999999999999999998775 56655
Q ss_pred e
Q 001164 638 D 638 (1134)
Q Consensus 638 r 638 (1134)
+
T Consensus 104 ~ 104 (108)
T 2jrs_A 104 T 104 (108)
T ss_dssp C
T ss_pred c
Confidence 4
No 112
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.30 E-value=3.9e-12 Score=120.56 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=60.9
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 567 ~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
-.++++||||||+.+++++||+++|++||+|+.|.+.+ .||||||+|.+.++|.+|++.|+|..+.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 131 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 131 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34789999999999999999999999999999999854 4899999999999999999999998665
No 113
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.30 E-value=4.9e-12 Score=122.61 Aligned_cols=74 Identities=20% Similarity=0.357 Sum_probs=67.4
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhccCcce----EEEEeec
Q 001164 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1134)
Q Consensus 566 v~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~ 639 (1134)
.-..+++||||||+.+++++||+++|++||.|+++.+.+ +||||||+|.+.++|..|++.|+|..+. +|+|+++
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 345689999999999999999999999999999999988 5999999999999999999999999876 7777654
No 114
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.4e-12 Score=116.92 Aligned_cols=72 Identities=13% Similarity=0.183 Sum_probs=64.7
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhc-cCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhccCc-ce----EEEE
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDR-FGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHF-SW----RVKF 636 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~-yGpLe~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~~-~~----RI~f 636 (1134)
.++++||||||+.+++|+||+++|++ ||.|.+|.+.. .||||||+|.+.++|..|++.|+|.. +. +|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 46899999999999999999999999 99999999875 48999999999999999999999987 65 6666
Q ss_pred eec
Q 001164 637 MDV 639 (1134)
Q Consensus 637 ~r~ 639 (1134)
++.
T Consensus 87 a~~ 89 (104)
T 2dhg_A 87 AIP 89 (104)
T ss_dssp CCC
T ss_pred ccC
Confidence 643
No 115
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.30 E-value=3.1e-12 Score=129.72 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=63.8
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec--cCceEEEEecCHHHHHHHHHhhccCcc----e--EEEEeec
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINIIDAIRAREYIRNHFS----W--RVKFMDV 639 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~--~rgfAFVeFr~i~DAi~A~~~L~G~~~----~--RI~f~r~ 639 (1134)
...||||||+.++||++|+++|++||.|++|+++. .||||||+|.+.+||.+|++.|+|+.+ + ||+|++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 45689999999999999999999999999999974 578999999999999999999999988 3 7888865
No 116
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.29 E-value=3.7e-12 Score=112.14 Aligned_cols=70 Identities=13% Similarity=0.226 Sum_probs=62.4
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhccCcce----EEEEee
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~------rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r 638 (1134)
.+++||||||+.+++++||++.|++||+|.++.+... +|||||+|.+.++|.+|+ .|+|..+. +|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999999999998653 899999999999999999 99999876 566554
Q ss_pred c
Q 001164 639 V 639 (1134)
Q Consensus 639 ~ 639 (1134)
.
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 117
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=6e-12 Score=116.13 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=59.7
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcc
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
...++||||||+.+++++||+++|++||.|..+.+... |||||+|.+.+||.+|++.|+|+.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~ 75 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKF 75 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCc
Confidence 45799999999999999999999999999999999887 9999999999999999999999865
No 118
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.27 E-value=4e-12 Score=122.14 Aligned_cols=71 Identities=24% Similarity=0.263 Sum_probs=63.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
.++++||||||+.+++|+||+++|++||+|.+|.+.. .||||||+|.+.++|.+|++.|+|..+. +|+|+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 5689999999999999999999999999999999963 5799999999999999999999998765 55554
Q ss_pred e
Q 001164 638 D 638 (1134)
Q Consensus 638 r 638 (1134)
+
T Consensus 124 ~ 124 (129)
T 2kxn_B 124 I 124 (129)
T ss_dssp S
T ss_pred c
Confidence 3
No 119
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=6.3e-12 Score=114.61 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=63.9
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-------cCceEEEEecCHHHHHHHHHhhccCcce----EEEE
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f 636 (1134)
.++++||||||+.+++|+||+++|++|| |.+|.+.. .+|||||+|.+.++|.+|+ .|+|..+. +|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4679999999999999999999999999 99999864 3789999999999999999 99999876 7888
Q ss_pred eecc
Q 001164 637 MDVG 640 (1134)
Q Consensus 637 ~r~~ 640 (1134)
++..
T Consensus 91 a~~~ 94 (104)
T 1wi8_A 91 ADQA 94 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 7653
No 120
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=8.8e-12 Score=115.76 Aligned_cols=71 Identities=17% Similarity=0.280 Sum_probs=63.7
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
...++||||||+.+++|+||+++|++||+|++|.+.+ .||||||+|.+.++|.+|++.|+| .+. +|+++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 4679999999999999999999999999999999965 468999999999999999999998 443 78887
Q ss_pred ec
Q 001164 638 DV 639 (1134)
Q Consensus 638 r~ 639 (1134)
..
T Consensus 94 ~~ 95 (116)
T 2cqd_A 94 YL 95 (116)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 121
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.27 E-value=4.8e-12 Score=141.17 Aligned_cols=65 Identities=15% Similarity=0.214 Sum_probs=60.8
Q ss_pred cccCceEEeccC--CCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcc
Q 001164 567 FSASKQLWLGSF--GPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 567 ~~~s~~LWVGnL--~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
-.+|++|||||+ +.++||+||+++|++||.|++|++.+.||||||+|.+.+||.+|+++|+|+.+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 368999999995 57899999999999999999999999999999999999999999999999844
No 122
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.26 E-value=6.7e-12 Score=111.66 Aligned_cols=70 Identities=13% Similarity=0.087 Sum_probs=63.8
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce----EEEEeec
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~ 639 (1134)
.+++||||||+.+++|+||+++|++| .|.++.+...||||||+|.+.++|.+|++.|+|..+. +|+++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 46899999999999999999999999 9999999889999999999999999999999999876 5666533
No 123
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.26 E-value=5.6e-12 Score=115.98 Aligned_cols=61 Identities=15% Similarity=0.299 Sum_probs=55.0
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCC--cceEEEec------cCceEEEEecCHHHHHHHHHhhccCc
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGP--LEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHF 630 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGp--Le~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~ 630 (1134)
-++||||||++++||++|+++|++||. +.+|.+.+ +||||||+|.+.+||.+|++.|+|..
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~ 77 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLH 77 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSS
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCC
Confidence 468999999999999999999999996 45888743 67999999999999999999999973
No 124
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.26 E-value=4.4e-12 Score=113.26 Aligned_cols=62 Identities=18% Similarity=0.262 Sum_probs=55.1
Q ss_pred ceEEeccCCCccCHHHHHHHhhccC--CcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 571 KQLWLGSFGPEASEAHIRFQIDRFG--PLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~yG--pLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
.+||||||+.++||+||+++|++|| .|.++.+.. .||||||+|.+.++|.+|++.|+|..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~ 71 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH 71 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 4799999999999999999999999 999999854 4789999999999999999999998765
No 125
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=7.4e-12 Score=115.64 Aligned_cols=72 Identities=19% Similarity=0.305 Sum_probs=63.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcc----eEEEe--ccCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLE----HFFFF--PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe----~v~~~--~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
.++++||||||+.++++++|+++|++||.|+ .+.+. ..||||||+|.+.++|..|++.|+|..+. +|+|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 4689999999999999999999999999994 44443 37899999999999999999999999876 78888
Q ss_pred ec
Q 001164 638 DV 639 (1134)
Q Consensus 638 r~ 639 (1134)
+.
T Consensus 103 ~~ 104 (115)
T 2cpx_A 103 KN 104 (115)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 126
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.25 E-value=1.2e-11 Score=120.51 Aligned_cols=76 Identities=22% Similarity=0.270 Sum_probs=68.4
Q ss_pred ccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----E
Q 001164 564 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----R 633 (1134)
Q Consensus 564 ~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----R 633 (1134)
.+...++++||||||+.++||+||+++|++||+|.+|.+.. .+|||||+|.+.++|.+|++.|+|..+. +
T Consensus 33 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 112 (156)
T 1h2v_Z 33 EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112 (156)
T ss_dssp CTTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34556889999999999999999999999999999999854 4689999999999999999999999886 8
Q ss_pred EEEeec
Q 001164 634 VKFMDV 639 (1134)
Q Consensus 634 I~f~r~ 639 (1134)
|+|++.
T Consensus 113 V~~a~~ 118 (156)
T 1h2v_Z 113 TDWDAG 118 (156)
T ss_dssp EEEESC
T ss_pred EEECCC
Confidence 888854
No 127
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.25 E-value=7.4e-12 Score=118.60 Aligned_cols=64 Identities=9% Similarity=-0.057 Sum_probs=59.9
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccC-CcceEEEe--ccCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFG-PLEHFFFF--PIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yG-pLe~v~~~--~~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
..++||||||+.+++++||+++|++|| .|..+.+. .+||||||+|.+.+||.+|++.|+|..+.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~ 93 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFR 93 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEET
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 467999999999999999999999999 89999985 38999999999999999999999998775
No 128
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.25 E-value=6.5e-12 Score=112.91 Aligned_cols=70 Identities=10% Similarity=-0.037 Sum_probs=60.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
...++||||||+.+++|+||+++|++||.|..+.+.. .+|||||+|.+.+||.+|++.|+|..+. +|++.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 3568999999999999999999999999998655432 4799999999999999999999998775 55554
No 129
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.24 E-value=1.3e-11 Score=117.58 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=64.7
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce----EEEEeec
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~ 639 (1134)
.++++|||||+ +++|+||+++|++||.|.+|.+...||||||+|.+.++|.+|++.|+|..+. +|+|++.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 56899999996 7999999999999999999999899999999999999999999999999876 7777755
No 130
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.24 E-value=6.3e-12 Score=114.93 Aligned_cols=63 Identities=14% Similarity=0.120 Sum_probs=58.3
Q ss_pred cCceEEeccCCC------ccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcc
Q 001164 569 ASKQLWLGSFGP------EASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 569 ~s~~LWVGnL~~------~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
.++.||||||+. ++++++|+++|++||+|.++.+.. +||||||+|.+.++|.+|++.|+|..+
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~ 79 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL 79 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc
Confidence 478999999999 999999999999999999999852 679999999999999999999999854
No 131
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=6.5e-12 Score=116.30 Aligned_cols=70 Identities=13% Similarity=0.124 Sum_probs=62.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
..+++||||||+.+++++||+++|++||.|.+|.+.. .+|||||+|.+.++|.+|+ .|+|..+. +|+++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 4579999999999999999999999999999999963 5799999999999999999 99998775 56655
Q ss_pred e
Q 001164 638 D 638 (1134)
Q Consensus 638 r 638 (1134)
+
T Consensus 102 ~ 102 (114)
T 2cq4_A 102 Q 102 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 132
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=1.2e-11 Score=114.79 Aligned_cols=63 Identities=16% Similarity=0.180 Sum_probs=58.0
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
..++||||||+.++|+++|++.|++||+|.+|.+.+ .||||||+|.+.++|.+|++ |+|..+.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~ 77 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYK 77 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEEC
Confidence 468999999999999999999999999999999975 68999999999999999999 8887543
No 133
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.24 E-value=7.3e-12 Score=117.35 Aligned_cols=71 Identities=11% Similarity=0.192 Sum_probs=64.1
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
..+++||||||+.+++++||+++|++||.|++|.+.. .+|||||+|.+.++|.+|+ .|+|..+. +|++.
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 4579999999999999999999999999999999865 3899999999999999999 89999876 67776
Q ss_pred ec
Q 001164 638 DV 639 (1134)
Q Consensus 638 r~ 639 (1134)
+.
T Consensus 113 ~~ 114 (124)
T 2jwn_A 113 RT 114 (124)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 134
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.24 E-value=5.2e-12 Score=111.91 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=60.6
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEeec
Q 001164 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1134)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~ 639 (1134)
++||||||+.+++|+||++.|++||+|.++.+.+ ++|||||+|.+.+ |.+|++.|+|..+. +|+++..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 6899999999999999999999999999999864 4899999999999 99999999999775 6776644
No 135
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.23 E-value=8.1e-12 Score=114.93 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=59.5
Q ss_pred ccCceEEeccCCCcc------CHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 568 SASKQLWLGSFGPEA------SEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~v------te~dL~~~F~~yGpLe~v~~~~----~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
..+++||||||+.++ |+++|+++|++||+|.++.+.+ +||||||+|.+.++|.+|++.|+|..+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 457899999999999 8899999999999999999873 6899999999999999999999998654
No 136
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.23 E-value=1.6e-11 Score=111.74 Aligned_cols=70 Identities=14% Similarity=0.194 Sum_probs=63.0
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
.++++||||||+.+++|+||+++|++|| |.+|.+.. .+|||||+|.+.++|.+|+ .|+|..+. +|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4689999999999999999999999998 99999864 3689999999999999999 89998876 77777
Q ss_pred ec
Q 001164 638 DV 639 (1134)
Q Consensus 638 r~ 639 (1134)
+.
T Consensus 91 ~~ 92 (103)
T 2dng_A 91 EG 92 (103)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 137
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.23 E-value=7.2e-12 Score=119.52 Aligned_cols=71 Identities=17% Similarity=0.252 Sum_probs=63.3
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcce--EEEec------cCceEEEEecCHHHHHHHHHhhccC----cce---
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH--FFFFP------IKGFALVEYINIIDAIRAREYIRNH----FSW--- 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~--v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~----~~~--- 632 (1134)
.++++||||||+.++||+||+++|++||.|.. |++.. .||||||+|.+. ||.+|++.|+|. .+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 56789999999999999999999999999976 88754 569999999999 999999999998 654
Q ss_pred -EEEEeec
Q 001164 633 -RVKFMDV 639 (1134)
Q Consensus 633 -RI~f~r~ 639 (1134)
+|+|++.
T Consensus 100 l~V~~a~~ 107 (131)
T 2m2b_A 100 INVEFAKG 107 (131)
T ss_dssp CCCEECCC
T ss_pred EEEEECCC
Confidence 7888865
No 138
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.23 E-value=1.9e-11 Score=118.73 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=66.6
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEE
Q 001164 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 635 (1134)
Q Consensus 566 v~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~ 635 (1134)
....+++||||||+.+++++||+++|++||.|+++.+.+ .||||||+|.+.++|..|++.|+|..+. +|+
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345689999999999999999999999999999999864 5799999999999999999999998876 777
Q ss_pred Eeec
Q 001164 636 FMDV 639 (1134)
Q Consensus 636 f~r~ 639 (1134)
|++.
T Consensus 146 ~a~~ 149 (158)
T 2kn4_A 146 MARY 149 (158)
T ss_dssp EECC
T ss_pred ECCC
Confidence 7765
No 139
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.22 E-value=6.8e-12 Score=114.31 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=59.4
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-------cCceEEEEecCHHHHHHHHHhhccCcce----EE
Q 001164 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-------IKGFALVEYINIIDAIRAREYIRNHFSW----RV 634 (1134)
Q Consensus 566 v~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI 634 (1134)
.-...++||||||+.+++++||++.|++|| |.+|.+.. .+|||||+|.+.++|.+|+ .|+|..+. +|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345689999999999999999999999999 99999865 3799999999999999999 99998765 55
Q ss_pred EEee
Q 001164 635 KFMD 638 (1134)
Q Consensus 635 ~f~r 638 (1134)
++++
T Consensus 93 ~~a~ 96 (100)
T 2j76_E 93 DVAD 96 (100)
T ss_dssp EECC
T ss_pred Eecc
Confidence 5554
No 140
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.22 E-value=1.4e-11 Score=114.47 Aligned_cols=77 Identities=13% Similarity=0.216 Sum_probs=59.0
Q ss_pred ccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce---
Q 001164 562 AAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW--- 632 (1134)
Q Consensus 562 ~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~--- 632 (1134)
...|--..+++||||||+.+++|+||+++|++||+|++|.+.+ .||||||+|.+.++|.+|++.| |..+.
T Consensus 17 ~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~ 95 (109)
T 2rs2_A 17 RGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKT 95 (109)
T ss_dssp ---------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEE
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEE
Confidence 3455567889999999999999999999999999999999865 4799999999999999999887 34443
Q ss_pred -EEEEeec
Q 001164 633 -RVKFMDV 639 (1134)
Q Consensus 633 -RI~f~r~ 639 (1134)
+|+++.+
T Consensus 96 l~V~~a~~ 103 (109)
T 2rs2_A 96 IDPKVAFP 103 (109)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 5665543
No 141
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.22 E-value=2.6e-11 Score=109.74 Aligned_cols=73 Identities=15% Similarity=0.204 Sum_probs=62.0
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCcceEEE-----eccCceEEEEecCHHHHHHHHHhhccCcce----EEEE
Q 001164 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF-----FPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1134)
Q Consensus 566 v~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~-----~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f 636 (1134)
--..+++||||||+.+++++||+++|++||.|....+ -.+||||||+|.+.++|.+|++ |+|..+. +|++
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 3346889999999999999999999999998877222 2368999999999999999999 9999875 6776
Q ss_pred eec
Q 001164 637 MDV 639 (1134)
Q Consensus 637 ~r~ 639 (1134)
++.
T Consensus 92 a~~ 94 (101)
T 1fj7_A 92 PKG 94 (101)
T ss_dssp CSC
T ss_pred cCC
Confidence 654
No 142
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.22 E-value=1e-11 Score=119.48 Aligned_cols=72 Identities=14% Similarity=0.236 Sum_probs=63.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceE--------EEe---ccCceEEEEecCHHHHHHHHHhhccCcce----
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHF--------FFF---PIKGFALVEYINIIDAIRAREYIRNHFSW---- 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v--------~~~---~~rgfAFVeFr~i~DAi~A~~~L~G~~~~---- 632 (1134)
.++++||||||+.++|+++|+++|++||.|..+ .+. ..+|||||+|.+.++|.+|++.|+|..+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 468999999999999999999999999999873 322 47899999999999999999999999876
Q ss_pred EEEEeec
Q 001164 633 RVKFMDV 639 (1134)
Q Consensus 633 RI~f~r~ 639 (1134)
+|+|++.
T Consensus 123 ~V~~a~~ 129 (143)
T 3egn_A 123 VVQFARS 129 (143)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 6777754
No 143
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.22 E-value=1.8e-11 Score=107.76 Aligned_cols=63 Identities=11% Similarity=0.288 Sum_probs=56.0
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcc
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
..+++||||||+.+++|++|++.|++||.|.++.+.. .+|||||+|.+.++|.+|++. +|+.+
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~ 77 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRL 77 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEE
Confidence 4679999999999999999999999999999999864 378999999999999999976 44433
No 144
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=1.2e-11 Score=111.94 Aligned_cols=72 Identities=19% Similarity=0.171 Sum_probs=61.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe--ccCceEEEEecCHHHHHHHHHhhccCcce----EEEEeec
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF--PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~--~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~ 639 (1134)
.++++||||||+.+++++||+++|++||.|.-+... ..+|||||+|.+.++|.+|++.|+|..+. +|+|++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 468999999999999999999999999988432221 26899999999999999999999998875 6777755
No 145
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.21 E-value=2.1e-11 Score=109.88 Aligned_cols=59 Identities=12% Similarity=0.238 Sum_probs=52.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhccCc
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHF 630 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-~rgfAFVeFr~i~DAi~A~~~L~G~~ 630 (1134)
.+..+||||||+.++||+||+++|++||+|.++.+.. +||||||+|.+.++|. .|+|..
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~----~~~~~~ 68 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQ----SLCGED 68 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHH----HHTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHH----HHcCCC
Confidence 4678999999999999999999999999999999876 7999999999999997 356653
No 146
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.21 E-value=1.6e-11 Score=121.91 Aligned_cols=70 Identities=17% Similarity=0.176 Sum_probs=61.2
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccC--CcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEE
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFG--PLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yG--pLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f 636 (1134)
..++||||||+.+++|+||+++|++|| .|.+|.+.. .||||||+|.+.++|.+|++.|+|..+. +|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999863 4799999999999999999999998765 5555
Q ss_pred ee
Q 001164 637 MD 638 (1134)
Q Consensus 637 ~r 638 (1134)
++
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 147
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.21 E-value=1.5e-11 Score=105.53 Aligned_cols=60 Identities=15% Similarity=0.362 Sum_probs=54.8
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcc
Q 001164 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
++||||||+.+++++||++.|++||+|.++.+.+ ++|||||+|.+.++|.+|++.|+ ..+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~ 66 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL 66 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc
Confidence 5799999999999999999999999999999865 36899999999999999999887 544
No 148
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.21 E-value=1.5e-11 Score=105.49 Aligned_cols=60 Identities=15% Similarity=0.322 Sum_probs=55.0
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 572 ~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
+||||||+.+++++||++.|++||+|.++.+.. ++|||||+|.+.++|.+|++ |+|..+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~ 66 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN 66 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC
Confidence 599999999999999999999999999999864 36899999999999999998 9998664
No 149
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.20 E-value=1.7e-11 Score=130.67 Aligned_cols=64 Identities=23% Similarity=0.390 Sum_probs=61.7
Q ss_pred ccCceEEeccCCCcc---------CHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcc
Q 001164 568 SASKQLWLGSFGPEA---------SEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~v---------te~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
..+++||||||+.++ +|++|+++|++||+|++|.+.+.||||||+|.+.++|..|+++|+|+.+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 468999999999998 8999999999999999999999999999999999999999999999988
No 150
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.20 E-value=2.7e-11 Score=116.70 Aligned_cols=63 Identities=21% Similarity=0.356 Sum_probs=59.1
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc-----CceEEEEecCHHHHHHHHHhhccCcc
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~-----rgfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
.+++||||||+.++|+++|+++|++||.|+++.+.+. +|||||+|.+.++|.+|++.|+|..+
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQT 161 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCC
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcc
Confidence 6789999999999999999999999999999999764 89999999999999999999999854
No 151
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.20 E-value=1.6e-11 Score=118.55 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=65.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
..+++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.++|.+|++.|+|..+. +|+++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4578999999999999999999999999999999864 4789999999999999999999999886 78877
Q ss_pred ec
Q 001164 638 DV 639 (1134)
Q Consensus 638 r~ 639 (1134)
+.
T Consensus 125 ~~ 126 (135)
T 2lea_A 125 RY 126 (135)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 152
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=1.2e-11 Score=112.68 Aligned_cols=66 Identities=14% Similarity=0.185 Sum_probs=59.7
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhccCcce
Q 001164 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 566 v~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~------rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
--...++||||||+.+++++||+++|++||+|.+|.+... ||||||+|.+.++|.+|++. +|..+.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~ 83 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD 83 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC
Confidence 3457899999999999999999999999999999998653 58999999999999999998 887765
No 153
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.20 E-value=1.7e-11 Score=114.94 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=58.6
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
..++||||||+.+++|+||+++|++||.|..+.+... |||||+|.+.+||.+|++.|+|+.+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~ 77 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFR 77 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4689999999999999999999999999999999877 99999999999999999999998775
No 154
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.19 E-value=2.6e-11 Score=119.86 Aligned_cols=72 Identities=26% Similarity=0.320 Sum_probs=64.7
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~------rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
.++++||||||+.++++++|+.+|++||.|.+|.+... +|||||+|.+.++|..|++.|+|..+. +|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35789999999999999999999999999999999764 799999999999999999999998776 67777
Q ss_pred ec
Q 001164 638 DV 639 (1134)
Q Consensus 638 r~ 639 (1134)
..
T Consensus 150 ~~ 151 (165)
T 1rk8_A 150 FV 151 (165)
T ss_dssp EE
T ss_pred cC
Confidence 54
No 155
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=2.9e-11 Score=112.22 Aligned_cols=71 Identities=20% Similarity=0.306 Sum_probs=62.6
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
...++||||||+.+++|++|+++|++||.|.+|.+.. .||||||+|.+.++|.+|++. +|..+. +|+++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 4579999999999999999999999999999999875 368999999999999999998 877665 66666
Q ss_pred ec
Q 001164 638 DV 639 (1134)
Q Consensus 638 r~ 639 (1134)
+.
T Consensus 104 ~~ 105 (116)
T 1x4b_A 104 VA 105 (116)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 156
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=3.6e-11 Score=112.10 Aligned_cols=67 Identities=15% Similarity=0.045 Sum_probs=60.1
Q ss_pred cccccCceEEeccCCCccCHHHHHHHhhccCCc-ceEEEec-----cCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPL-EHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 565 dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpL-e~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
|.-.+.++||||||+.++||+||+++|+.||.| ++|.+.. .||||||+|.+.+||.+|++. +|..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~ 82 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLN 82 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEET
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccC
Confidence 455678999999999999999999999999999 8898863 789999999999999999987 887654
No 157
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=2.6e-11 Score=108.90 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=56.3
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCc-eEEEEecCHHHHHHHHHhhccCcce
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKG-FALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rg-fAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
.+++||||||+.+++|+||+++|++||+|.+|.+.+..| ||||+|.+.++|.+|++ |+|..+.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~ 70 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLG 70 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEET
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEEC
Confidence 568999999999999999999999999999995544222 99999999999999999 9998765
No 158
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=5.7e-11 Score=106.39 Aligned_cols=72 Identities=13% Similarity=0.100 Sum_probs=62.9
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceE-EEec--cCceEEEEecCHHHHHHHHHhhccCcce----EEEEeec
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHF-FFFP--IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v-~~~~--~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~ 639 (1134)
..+++||||||+.+++++||+++|++||+|.++ .+.. ..+.|||+|.+.++|..|++.|+|..+. +|+|+..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 357899999999999999999999999999999 4654 4456999999999999999999999775 6776654
No 159
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.9e-11 Score=114.03 Aligned_cols=61 Identities=25% Similarity=0.442 Sum_probs=54.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe---------ccCceEEEEecCHHHHHHHHHhh---ccC
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---------PIKGFALVEYINIIDAIRAREYI---RNH 629 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~---------~~rgfAFVeFr~i~DAi~A~~~L---~G~ 629 (1134)
..+++||||||+.+++|+||+++|++||+|. +.+. ++||||||+|.+.++|.+|++.| +|+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~ 78 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGK 78 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCc
Confidence 3579999999999999999999999999999 5543 35899999999999999999998 665
No 160
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=4.5e-11 Score=108.57 Aligned_cols=71 Identities=14% Similarity=0.194 Sum_probs=59.9
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEE
Q 001164 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1134)
Q Consensus 567 ~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f 636 (1134)
..++++||||||+.+++++||+++|++||+|..|.+.. .||||||+|.+.++|.+|++. |+.+. +|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEEe
Confidence 35689999999999999999999999999999999865 368999999999999999996 33332 5666
Q ss_pred eec
Q 001164 637 MDV 639 (1134)
Q Consensus 637 ~r~ 639 (1134)
++.
T Consensus 90 a~~ 92 (103)
T 2cqg_A 90 PNS 92 (103)
T ss_dssp CCT
T ss_pred cCC
Confidence 644
No 161
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.16 E-value=5.1e-11 Score=113.54 Aligned_cols=69 Identities=14% Similarity=0.250 Sum_probs=62.6
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
.+++||||||+.++++++|+++|++||.|+++.+.+ ++|||||+|.+.++|.+|++.|+|..+. +|+|+
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 577999999999999999999999999999999874 4789999999999999999999999775 56655
No 162
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=6.1e-11 Score=107.29 Aligned_cols=72 Identities=18% Similarity=0.189 Sum_probs=60.9
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe---ccCceEEEEecCHHHHHHHHHhhccCcce----EEEEeec
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~---~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~ 639 (1134)
.++++||||||+.+++++||+++|+.|+.+.-+.-. ..+|||||+|.+.+||.+|++.|+|..+. +|+|++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 468999999999999999999999999654433321 24699999999999999999999999876 7888765
No 163
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=2.7e-11 Score=107.28 Aligned_cols=55 Identities=20% Similarity=0.336 Sum_probs=50.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHH
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRA 622 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-~rgfAFVeFr~i~DAi~A 622 (1134)
..+++||||||+.+++|+||+++|++||+|.++.+.. .||||||+|.+.++|.+|
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH
Confidence 3589999999999999999999999999999999976 799999999999999643
No 164
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.15 E-value=8.3e-11 Score=117.04 Aligned_cols=75 Identities=28% Similarity=0.407 Sum_probs=67.9
Q ss_pred cccccCceEEeccCCCccCHHHHHHHhhccC-CcceEEEec-cCceEEEEecCHHHHHHHHHhhccCcce-----EEEEe
Q 001164 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRFG-PLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW-----RVKFM 637 (1134)
Q Consensus 565 dv~~~s~~LWVGnL~~~vte~dL~~~F~~yG-pLe~v~~~~-~rgfAFVeFr~i~DAi~A~~~L~G~~~~-----RI~f~ 637 (1134)
.+..++++||||||+.++++++|+++|++|| .|.++.+.+ .+|||||+|.+.+||..|++.|+|+.+. +|.|+
T Consensus 115 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 115 NIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp CCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred cCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 3456899999999999999999999999999 999999976 8999999999999999999999998764 67766
Q ss_pred ec
Q 001164 638 DV 639 (1134)
Q Consensus 638 r~ 639 (1134)
++
T Consensus 195 ~~ 196 (198)
T 1qm9_A 195 KS 196 (198)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 165
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.15 E-value=3.2e-11 Score=103.24 Aligned_cols=59 Identities=20% Similarity=0.392 Sum_probs=53.4
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcc
Q 001164 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 572 ~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
+||||||+.+++++||++.|++||+|.++.+.. .+|||||+|.+.++|.+|++. +|..+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~ 65 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNV 65 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCB
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeE
Confidence 589999999999999999999999999999853 489999999999999999985 66644
No 166
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=9.8e-11 Score=108.10 Aligned_cols=64 Identities=17% Similarity=0.112 Sum_probs=56.8
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 567 ~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
-...++||||||+.++||+||++.|++||.+ +|.+.. +||||||+|.+.+||.+|+ .|+|+.+.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~ 80 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQ 80 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeEC
Confidence 4567899999999999999999999999965 888753 5789999999999999999 57988776
No 167
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=1.3e-10 Score=103.41 Aligned_cols=69 Identities=10% Similarity=0.062 Sum_probs=61.1
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhccCcce----EEEEee
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r 638 (1134)
...++||||||+.+++++||+++|++| .|.+|.+.. .+|||||+|.+.+||..|++ |+|..+. +|+++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 357899999999999999999999999 999999865 47899999999999999999 9999876 555553
No 168
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.73 E-value=5.5e-12 Score=117.36 Aligned_cols=73 Identities=15% Similarity=0.239 Sum_probs=64.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcce--------EEEec------cCceEEEEecCHHHHHHHHHhhccCcce-
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH--------FFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW- 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~--------v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~- 632 (1134)
.++++||||||+.+++++||+++|++||.|.. |.+.. .||||||+|.+.++|.+|++.|+|..+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 56899999999999999999999999999998 77654 4799999999999999999999998876
Q ss_pred ---EEEEeecc
Q 001164 633 ---RVKFMDVG 640 (1134)
Q Consensus 633 ---RI~f~r~~ 640 (1134)
+|++++..
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 67777543
No 169
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.12 E-value=1.9e-11 Score=110.90 Aligned_cols=62 Identities=19% Similarity=0.393 Sum_probs=56.6
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHH---hhccCc
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRARE---YIRNHF 630 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-----~rgfAFVeFr~i~DAi~A~~---~L~G~~ 630 (1134)
.+++||||||+.+++++||+++|++||.|.++.+.. .||||||+|.+.++|.+|++ .|+|+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~ 77 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVESQINFHGKK 77 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTTCCCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHhCCCeECCEE
Confidence 468999999999999999999999999999999876 57999999999999999999 666653
No 170
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.12 E-value=9.6e-11 Score=117.06 Aligned_cols=73 Identities=18% Similarity=0.199 Sum_probs=66.4
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhccCcce----EEEE
Q 001164 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1134)
Q Consensus 567 ~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~------rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f 636 (1134)
...+++||||||+.+++++||+++|++||.|+.+.+.+. +|||||+|.+.+||.+|++.|+|..+. +|+|
T Consensus 122 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 122 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 356799999999999999999999999999999999764 799999999999999999999999876 7777
Q ss_pred eec
Q 001164 637 MDV 639 (1134)
Q Consensus 637 ~r~ 639 (1134)
++.
T Consensus 202 a~~ 204 (216)
T 2qfj_A 202 AVT 204 (216)
T ss_dssp CSS
T ss_pred ecC
Confidence 754
No 171
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.12 E-value=1.2e-10 Score=117.63 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=65.8
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 567 ~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
..++++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.+||.+|++.|+|..+. +|+|+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 46789999999999999999999999999999999964 5799999999999999999999998775 67766
Q ss_pred ec
Q 001164 638 DV 639 (1134)
Q Consensus 638 r~ 639 (1134)
..
T Consensus 165 ~~ 166 (177)
T 2f3j_A 165 AS 166 (177)
T ss_dssp SS
T ss_pred cC
Confidence 43
No 172
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.12 E-value=1.2e-10 Score=111.20 Aligned_cols=64 Identities=9% Similarity=0.183 Sum_probs=59.2
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhccCcce
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~------rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
.+++||||||+.++++++|+++|++||.|+.+.+.+. +|||||+|.+.++|.+|++.|+|+.+.
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 156 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC
Confidence 4678999999999999999999999999999998753 799999999999999999999998663
No 173
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=5.4e-11 Score=112.30 Aligned_cols=64 Identities=19% Similarity=0.182 Sum_probs=56.4
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcce-EEEe-----ccCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH-FFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~-v~~~-----~~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
...++||||||+.++||+||+++|++||.|.+ +.+. ..+|||||+|.+.+||.+|++ |+|+.+.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~ 92 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG 92 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC
Confidence 45689999999999999999999999999987 4443 258999999999999999999 9998554
No 174
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.11 E-value=1.3e-10 Score=119.73 Aligned_cols=75 Identities=28% Similarity=0.407 Sum_probs=68.1
Q ss_pred cccccCceEEeccCCCccCHHHHHHHhhccC-CcceEEEec-cCceEEEEecCHHHHHHHHHhhccCcce-----EEEEe
Q 001164 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRFG-PLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW-----RVKFM 637 (1134)
Q Consensus 565 dv~~~s~~LWVGnL~~~vte~dL~~~F~~yG-pLe~v~~~~-~rgfAFVeFr~i~DAi~A~~~L~G~~~~-----RI~f~ 637 (1134)
++..++++||||||+.++++++|+++|++|| .|.+|.+.+ .+|||||+|.+.++|.+|++.|+|..+. +|.|+
T Consensus 146 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 146 NIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp TCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred cCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 4567899999999999999999999999999 999999976 9999999999999999999999998764 67766
Q ss_pred ec
Q 001164 638 DV 639 (1134)
Q Consensus 638 r~ 639 (1134)
++
T Consensus 226 ~~ 227 (229)
T 2adc_A 226 KS 227 (229)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 175
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.11 E-value=1.3e-10 Score=122.02 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=65.1
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccC-ceEEEEecCHHHHHHHHHhhccCcce-----EEEEe
Q 001164 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK-GFALVEYINIIDAIRAREYIRNHFSW-----RVKFM 637 (1134)
Q Consensus 566 v~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~r-gfAFVeFr~i~DAi~A~~~L~G~~~~-----RI~f~ 637 (1134)
...++++||||||+.+++++||+++|++||.|.+|.+.+.+ |||||+|.+.+||.+|++.|+|..+. +|+|+
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 44578999999999999999999999999999999999865 99999999999999999999998765 55554
No 176
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.10 E-value=1e-10 Score=112.93 Aligned_cols=63 Identities=22% Similarity=0.387 Sum_probs=59.6
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhccCcce
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~------rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
+++||||||+.+++++||++.|++||+|+++.+.+. +|||||+|.+.++|.+|++.|+|..+.
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG 162 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC
Confidence 899999999999999999999999999999999764 799999999999999999999998765
No 177
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.08 E-value=1e-10 Score=122.71 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=57.8
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccC--CcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFG--PLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yG--pLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
..++||||||+.++||+||+++|++|| .|.+|.+.. .||||||+|.+.++|.+|++.|+|+.+.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~ 138 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH 138 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC
Confidence 577999999999999999999999999 999999854 5799999999999999999999998654
No 178
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.08 E-value=2.2e-10 Score=109.96 Aligned_cols=63 Identities=14% Similarity=0.260 Sum_probs=58.9
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhccCcc
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~------rgfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
.+++|||+||+.++++++|+++|++||.|+.+.+.+. +|||||+|.+.++|.+|++.|+|+.+
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 156 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP 156 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEe
Confidence 4689999999999999999999999999999998764 49999999999999999999999865
No 179
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.07 E-value=1.5e-10 Score=114.13 Aligned_cols=72 Identities=22% Similarity=0.359 Sum_probs=65.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~------rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
..+++||||||+.+++++||+++|++||.|.++.+.+. +|||||+|.+.++|.+|++.|+|..+. +|+|+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 56799999999999999999999999999999998764 799999999999999999999999876 66666
Q ss_pred ec
Q 001164 638 DV 639 (1134)
Q Consensus 638 r~ 639 (1134)
++
T Consensus 192 ~~ 193 (198)
T 2yh0_A 192 SV 193 (198)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 180
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.07 E-value=1.8e-10 Score=117.54 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=60.1
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~----~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
..+++||||||+.+++++||+++|++||.|+.+.+.+ .||||||+|.+.++|.+|++.|+|..+.
T Consensus 101 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 101 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 4567999999999999999999999999999999864 6899999999999999999999998765
No 181
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.07 E-value=1.5e-10 Score=109.14 Aligned_cols=64 Identities=14% Similarity=-0.031 Sum_probs=58.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCC---cceEEEec-----cCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGP---LEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGp---Le~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
...++||||||+.++||+||+++|++||. |.+|.+.. .||||||+|.+.+||.+|++ |+|+.+.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~ 86 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG 86 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC
Confidence 45789999999999999999999999999 89999863 57999999999999999999 9998654
No 182
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=3.3e-10 Score=104.03 Aligned_cols=64 Identities=13% Similarity=-0.007 Sum_probs=57.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcce-EEEe-----ccCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH-FFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~-v~~~-----~~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
...++||||||+.++||+||++.|++||.|.+ |.+. +.+|||||+|.+.+||.+|++. +|+.+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~ 82 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG 82 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC
Confidence 45789999999999999999999999999987 7664 3689999999999999999998 887765
No 183
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.04 E-value=2.3e-10 Score=111.97 Aligned_cols=64 Identities=14% Similarity=-0.055 Sum_probs=58.0
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCC---cceEEEec-----cCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGP---LEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGp---Le~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
...++||||||+.++||+||++.|++||. |++|++.. +||||||+|.+.+||.+|++ |+|+.+.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~ 113 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG 113 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC
Confidence 35689999999999999999999999999 88998863 57999999999999999999 9998654
No 184
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.04 E-value=2.7e-10 Score=117.19 Aligned_cols=65 Identities=18% Similarity=0.132 Sum_probs=60.5
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCc--ceEEEecc----CceEEEEecCHHHHHHHHHhhccCc
Q 001164 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPL--EHFFFFPI----KGFALVEYINIIDAIRAREYIRNHF 630 (1134)
Q Consensus 566 v~~~s~~LWVGnL~~~vte~dL~~~F~~yGpL--e~v~~~~~----rgfAFVeFr~i~DAi~A~~~L~G~~ 630 (1134)
+..++++||||||+.++||++|+++|+.||.| .+|.+++. +|||||+|.+.+||..|+..|+|..
T Consensus 119 ~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~ 189 (205)
T 3tyt_A 119 IQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQ 189 (205)
T ss_dssp CCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred cCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCC
Confidence 45789999999999999999999999999999 89998864 5899999999999999999999984
No 185
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.04 E-value=1.8e-10 Score=106.33 Aligned_cols=64 Identities=13% Similarity=0.010 Sum_probs=58.0
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCC---cceEEEec-----cCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGP---LEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGp---Le~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
...++||||||+.++||+||++.|+.||. |.+|.+.. .||||||+|.+.+||.+|++ |+|+.+.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG 80 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC
Confidence 46789999999999999999999999998 89999863 67899999999999999999 9997543
No 186
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.03 E-value=4.8e-10 Score=104.85 Aligned_cols=71 Identities=15% Similarity=0.242 Sum_probs=60.6
Q ss_pred ccCceEEeccCCC-----ccCHHHHHHHhhccCCcceEEEec-------cCceEEEEecCHHHHHHHHHhhccCcce---
Q 001164 568 SASKQLWLGSFGP-----EASEAHIRFQIDRFGPLEHFFFFP-------IKGFALVEYINIIDAIRAREYIRNHFSW--- 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~-----~vte~dL~~~F~~yGpLe~v~~~~-------~rgfAFVeFr~i~DAi~A~~~L~G~~~~--- 632 (1134)
.+|+.|+|+|+-. +.+++||+++|++||.|.+|++.. +||||||+|.+.+||.+|++.|+|+.+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 5789999999973 358999999999999999999864 4799999999999999999999999764
Q ss_pred -EEEEee
Q 001164 633 -RVKFMD 638 (1134)
Q Consensus 633 -RI~f~r 638 (1134)
++.|++
T Consensus 86 i~v~~a~ 92 (105)
T 2pe8_A 86 VKACFYN 92 (105)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 555554
No 187
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.02 E-value=2.8e-10 Score=109.39 Aligned_cols=71 Identities=14% Similarity=0.227 Sum_probs=61.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
.++++||||||+.++++++|++.|++||.|+++.+.. ++|||||+|.+.++|.+|++ |+|..+. +|+|+
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 3578999999999999999999999999999999865 46899999999999999998 8887665 56655
Q ss_pred ec
Q 001164 638 DV 639 (1134)
Q Consensus 638 r~ 639 (1134)
++
T Consensus 164 ~p 165 (167)
T 2cjk_A 164 EP 165 (167)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 188
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.01 E-value=3.4e-10 Score=129.27 Aligned_cols=72 Identities=19% Similarity=0.292 Sum_probs=66.0
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
.++++||||||+.++|+++|+.+|++||.|..|.|.. .+|||||+|.+.++|.+|++.|+|..+. +|+|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 5678999999999999999999999999999999864 4899999999999999999999999886 78887
Q ss_pred ec
Q 001164 638 DV 639 (1134)
Q Consensus 638 r~ 639 (1134)
..
T Consensus 180 ~~ 181 (437)
T 3pgw_S 180 RG 181 (437)
T ss_pred CC
Confidence 53
No 189
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.98 E-value=6.7e-10 Score=109.37 Aligned_cols=70 Identities=19% Similarity=0.300 Sum_probs=60.9
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhccCcce----EEEEee
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~------~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r 638 (1134)
.+++||||||+.++++++|+++|++||.|+++.+.. ++|||||+|.+.++|.+|++. +|+.+. +|+++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 458999999999999999999999999999999875 379999999999999999986 576654 677775
Q ss_pred c
Q 001164 639 V 639 (1134)
Q Consensus 639 ~ 639 (1134)
+
T Consensus 182 ~ 182 (196)
T 1l3k_A 182 S 182 (196)
T ss_dssp -
T ss_pred C
Confidence 4
No 190
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=1.2e-09 Score=101.72 Aligned_cols=72 Identities=13% Similarity=0.198 Sum_probs=62.2
Q ss_pred ccCceEEeccCCCcc-----------CHHHHHHHhhccCCcceEEEec--cCceEEEEecCHHHHHHHHHhhccCcce--
Q 001164 568 SASKQLWLGSFGPEA-----------SEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINIIDAIRAREYIRNHFSW-- 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~v-----------te~dL~~~F~~yGpLe~v~~~~--~rgfAFVeFr~i~DAi~A~~~L~G~~~~-- 632 (1134)
++++.|+|.||-... +|+||+++|++||.|.+|++.. +||||||+|.+.+||.+|++.|+|+.+.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 579999999995443 3789999999999999998863 7899999999999999999999999775
Q ss_pred --EEEEeec
Q 001164 633 --RVKFMDV 639 (1134)
Q Consensus 633 --RI~f~r~ 639 (1134)
+|+|++.
T Consensus 93 ~l~v~~a~~ 101 (112)
T 2dit_A 93 QITAQAWDG 101 (112)
T ss_dssp ECEEEECCS
T ss_pred EEEEEEeCC
Confidence 7777654
No 191
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.97 E-value=5.2e-10 Score=108.74 Aligned_cols=70 Identities=14% Similarity=0.076 Sum_probs=61.3
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEe-ccCceEEEEecCHHHHHHHHHhhccCcce----EEEEee
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~-~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r 638 (1134)
.+++||||||+.+++++||+++|++||.|+.+... .++|||||+|.+.++|.+|++.|+|+.+. +|+|++
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 67899999999999999999999999999888111 37899999999999999999999998775 566654
No 192
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=5.9e-10 Score=104.43 Aligned_cols=69 Identities=20% Similarity=0.212 Sum_probs=61.4
Q ss_pred cccCce-EEeccCCCccCHHH----HHHHhhcc-CCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce----EEEE
Q 001164 567 FSASKQ-LWLGSFGPEASEAH----IRFQIDRF-GPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1134)
Q Consensus 567 ~~~s~~-LWVGnL~~~vte~d----L~~~F~~y-GpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f 636 (1134)
..++.+ ||||||+-++++++ |+++|++| |+|-+|+ .|||||.|.++++|.+|++.|+|..+. ||.|
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 357888 99999999999988 66899999 5999993 399999999999999999999999887 8888
Q ss_pred eec
Q 001164 637 MDV 639 (1134)
Q Consensus 637 ~r~ 639 (1134)
+..
T Consensus 81 A~~ 83 (96)
T 2diu_A 81 TPK 83 (96)
T ss_dssp SCC
T ss_pred cCC
Confidence 854
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.95 E-value=1.1e-09 Score=115.29 Aligned_cols=83 Identities=20% Similarity=0.266 Sum_probs=70.7
Q ss_pred ecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecc-----CceEEEEecCHHHHHHHHHhhcc-Cc
Q 001164 557 FDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRN-HF 630 (1134)
Q Consensus 557 ~~g~~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~-----rgfAFVeFr~i~DAi~A~~~L~G-~~ 630 (1134)
++|-+.-++...++++||||||+.++|+++|+++|++||.|.+|.+... +|||||+|.+.++|.+|++.|+| ..
T Consensus 83 i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~ 162 (261)
T 3sde_A 83 LKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAF 162 (261)
T ss_dssp ETTEECEEEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCE
T ss_pred ECCceeEeeecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeE
Confidence 5666667777778999999999999999999999999999999998754 89999999999999999999955 33
Q ss_pred c-------eEEEEeec
Q 001164 631 S-------WRVKFMDV 639 (1134)
Q Consensus 631 ~-------~RI~f~r~ 639 (1134)
+ .+|++++.
T Consensus 163 ~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 163 LLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp ESSSSCCBCEEEECCC
T ss_pred EecCCCceEEEeeccc
Confidence 2 16776654
No 194
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=1e-09 Score=103.39 Aligned_cols=63 Identities=13% Similarity=0.118 Sum_probs=56.9
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
...++||||||+.++||+||++.|+.| .|.+|.+.. +||||||+|.+.+||.+|+ .|+|+.+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~ 81 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI 81 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC
Confidence 346799999999999999999999999 899999863 6899999999999999999 79998664
No 195
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.94 E-value=5.2e-10 Score=109.87 Aligned_cols=63 Identities=14% Similarity=0.044 Sum_probs=56.4
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
...++||||||+.++||+||++.|++|| +.+|.+.. +||||||+|.+.+||.+|+ .|+|+.+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~ 111 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQ 111 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEEC
Confidence 4578999999999999999999999999 66888753 6899999999999999999 88988776
No 196
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=8.9e-10 Score=106.09 Aligned_cols=62 Identities=15% Similarity=0.104 Sum_probs=54.9
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCc----ceEEEec-----cCceEEEEecCHHHHHHHHHhhccCcc
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPL----EHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpL----e~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
..++||||||+.++||+||++.|++||+| ++|++.. +||||||+|.+.+||.+|++. +|+.+
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l 92 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLL 92 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCee
Confidence 46899999999999999999999999986 6888753 689999999999999999986 77643
No 197
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.83 E-value=3.7e-09 Score=108.04 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=55.2
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcc
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRN 628 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G 628 (1134)
..++||||||+.++|+++|++.|++||+|.+|.+.+ .||||||+|.+.++|..|++.+..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~ 172 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ 172 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC
Confidence 468999999999999999999999999999999864 689999999999999999987644
No 198
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.79 E-value=5.9e-09 Score=101.07 Aligned_cols=62 Identities=13% Similarity=0.020 Sum_probs=53.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcc--eEEEec-----cCceEEEEecCHHHHHHHHHhhccCcc
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLE--HFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe--~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
...++||||||+.++||+||++.|+.|| |. +|.+.. +||||||+|.+.+||.+|++. +|+.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~~-i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l 108 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGLE-IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERI 108 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCC-ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEE
Confidence 4578999999999999999999999994 55 888753 689999999999999999985 56544
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.78 E-value=9.6e-09 Score=95.95 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=59.6
Q ss_pred ccCceEEeccCCCc----------cCHHHHHHHhhccCCcceEEEec--------cCceEEEEecCHHHHHHHHHhhccC
Q 001164 568 SASKQLWLGSFGPE----------ASEAHIRFQIDRFGPLEHFFFFP--------IKGFALVEYINIIDAIRAREYIRNH 629 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~----------vte~dL~~~F~~yGpLe~v~~~~--------~rgfAFVeFr~i~DAi~A~~~L~G~ 629 (1134)
+||+-|-|-|+-.. ..++||+++|++||+|.+|.+.+ ++|||||+|.+.++|.+|++.|+|+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 36788888887432 24579999999999999999964 4799999999999999999999999
Q ss_pred cce----EEEEeec
Q 001164 630 FSW----RVKFMDV 639 (1134)
Q Consensus 630 ~~~----RI~f~r~ 639 (1134)
.+. ++.|.+.
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 765 5666644
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.75 E-value=1.4e-08 Score=97.31 Aligned_cols=71 Identities=13% Similarity=0.177 Sum_probs=59.8
Q ss_pred ccCceEEeccCCC-----ccCHHHHHHHhhccCCcceEEEecc----------CceEEEEecCHHHHHHHHHhhccCcce
Q 001164 568 SASKQLWLGSFGP-----EASEAHIRFQIDRFGPLEHFFFFPI----------KGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~-----~vte~dL~~~F~~yGpLe~v~~~~~----------rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
++|+.|.|.|+-. +-.++||+++|++||+|.+|++.++ +|||||+|.+.++|.+|++.|+|+.+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3789999999853 2357999999999999999998752 489999999999999999999999765
Q ss_pred ----EEEEee
Q 001164 633 ----RVKFMD 638 (1134)
Q Consensus 633 ----RI~f~r 638 (1134)
++.|.+
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 566654
No 201
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=2.9e-08 Score=92.68 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=52.2
Q ss_pred CccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhccCcc--eEEEEeec
Q 001164 580 PEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFS--WRVKFMDV 639 (1134)
Q Consensus 580 ~~vte~dL~~~F~~yGpLe~v~~~~-~rgfAFVeFr~i~DAi~A~~~L~G~~~--~RI~f~r~ 639 (1134)
.+++|++|+++|++||.|.+|.+.. .||||||+|.+.+||..|++.++|..- .+|+|++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLEG 89 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSSC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEccC
Confidence 6799999999999999999999974 899999999999999999999877432 27777754
No 202
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.70 E-value=1.4e-08 Score=100.22 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=56.6
Q ss_pred ceEEeccC----CCccCHHHHHHHhhccCCcceEEEe------ccCceEEEEecC----HHH----HHHHHH--hhccCc
Q 001164 571 KQLWLGSF----GPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYIN----IID----AIRARE--YIRNHF 630 (1134)
Q Consensus 571 ~~LWVGnL----~~~vte~dL~~~F~~yGpLe~v~~~------~~rgfAFVeFr~----i~D----Ai~A~~--~L~G~~ 630 (1134)
.+|||||| +..++|.+|+..|+.||.|.++.+. ++||||||+|.| ..+ |..|++ .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999985 478999999997 544 677877 788887
Q ss_pred ce----EEEEeec
Q 001164 631 SW----RVKFMDV 639 (1134)
Q Consensus 631 ~~----RI~f~r~ 639 (1134)
+. ||++-|-
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 75 5554433
No 203
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.68 E-value=7.4e-09 Score=96.44 Aligned_cols=58 Identities=16% Similarity=0.231 Sum_probs=51.0
Q ss_pred eccCCCccCHHHHHHHh------------hccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 575 LGSFGPEASEAHIRFQI------------DRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 575 VGnL~~~vte~dL~~~F------------~~yGpLe~v~~~~-----~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
+++|+.++++++|++.| ++||+|.+|++.+ +||||||+|.+.+||.+|++.|+|+.+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 67888888888887776 9999999999975 4899999999999999999999998654
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.65 E-value=6.3e-08 Score=92.32 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=57.4
Q ss_pred cCceEEeccCCCc----------cCHHHHHHHhhccCCcceEEEec--cCceEEEEecCHHHHHHHHHhhccCcce----
Q 001164 569 ASKQLWLGSFGPE----------ASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINIIDAIRAREYIRNHFSW---- 632 (1134)
Q Consensus 569 ~s~~LWVGnL~~~----------vte~dL~~~F~~yGpLe~v~~~~--~rgfAFVeFr~i~DAi~A~~~L~G~~~~---- 632 (1134)
+|+-|-+-|+-.. -.++||+++|++||.|.+|++.+ ++|||||+|.+.++|.+|++.|+|+.+.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 5666666665442 24678999999999999999976 5899999999999999999999999765
Q ss_pred EEEEee
Q 001164 633 RVKFMD 638 (1134)
Q Consensus 633 RI~f~r 638 (1134)
++.|.+
T Consensus 86 ~v~~~~ 91 (114)
T 3s6e_A 86 TAAYVP 91 (114)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 566664
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.43 E-value=4.2e-07 Score=88.27 Aligned_cols=62 Identities=6% Similarity=0.011 Sum_probs=58.5
Q ss_pred ccccCceEEeccCCCc-cCHHHHHHHhhccCCcceEEEeccCceEEEEecC-HHHHHHHHHhhc
Q 001164 566 IFSASKQLWLGSFGPE-ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYIN-IIDAIRAREYIR 627 (1134)
Q Consensus 566 v~~~s~~LWVGnL~~~-vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~-i~DAi~A~~~L~ 627 (1134)
.+.+.+-||||||+.+ ++++||+++|+.||+|..|+|.+.+.+|||+|.+ ..+|.+|++.|+
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTT
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhh
Confidence 3568899999999999 9999999999999999999999999999999999 899999999995
No 206
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.40 E-value=6.9e-07 Score=86.72 Aligned_cols=111 Identities=17% Similarity=0.163 Sum_probs=75.4
Q ss_pred ccCceEEEEecCHHHHHHHHHhhccCcce--EEEEeecc------CCCCcccccccccccceEEEccCCChhhHHHHHHH
Q 001164 604 PIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVG------LGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHE 675 (1134)
Q Consensus 604 ~~rgfAFVeFr~i~DAi~A~~~L~G~~~~--RI~f~r~~------lGa~G~~~Gva~~~s~~LwVG~iss~~~keeilhE 675 (1134)
..+|||||+|.+.++|..|++.++|.... .+.+.... ...............+.||||+++..+++++|...
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 37899999999999999999998865332 11111000 00000011112246899999999999999999999
Q ss_pred HhhccccCCcee-Ee---cCCCceeeEeecCHHHHHHHHHHHH
Q 001164 676 SYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 676 Lykfglk~p~~f-tf---lsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
|..+|....+.+ .+ -..++.++++|.+.++|..|+..+.
T Consensus 91 F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 133 (158)
T 2kn4_A 91 FEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMD 133 (158)
T ss_dssp HHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHST
T ss_pred HHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 988774443322 11 1235689999999999999987663
No 207
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.29 E-value=6.3e-07 Score=86.80 Aligned_cols=108 Identities=19% Similarity=0.101 Sum_probs=78.4
Q ss_pred cCceEEEEecCHHHHHHHHHhh-ccCcce---EEEEeeccCC-------CCcccccccccccceEEEccCCChhhHHHHH
Q 001164 605 IKGFALVEYINIIDAIRAREYI-RNHFSW---RVKFMDVGLG-------TKGVINGVAVGSCFHVYVGNIPNQWAKDEIL 673 (1134)
Q Consensus 605 ~rgfAFVeFr~i~DAi~A~~~L-~G~~~~---RI~f~r~~lG-------a~G~~~Gva~~~s~~LwVG~iss~~~keeil 673 (1134)
-+|+++|||.+.++|.+|++.| +|+.+. ++++...... ............++.||||+++..+++++|.
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~ 91 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELE 91 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCCCEEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHHH
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCCCceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHH
Confidence 5799999999999999999999 776653 5554432100 0000111123468999999999999999999
Q ss_pred HHHhhccccCCceeEecC-CCceeeEeecCHHHHHHHHHHHH
Q 001164 674 HESYKVVYKGPYMVTDLS-CEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 674 hELykfglk~p~~ftfls-de~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.-|..||.... +.... .++.++++|.+.++|..|+..+.
T Consensus 92 ~~F~~~G~i~~--v~i~~~~~g~afV~f~~~~~a~~A~~~l~ 131 (150)
T 2i2y_A 92 RAFGYYGPLRS--VWVARNPPGFAFVEFEDPRDAADAVRELD 131 (150)
T ss_dssp HHHHHHSCEEE--EEECSSSCSEEEEEESSHHHHHHHHHHHS
T ss_pred HHHHhhCCEEE--EEEeeCCCcEEEEEECCHHHHHHHHHHcC
Confidence 98988764433 33333 38899999999999999988774
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.95 E-value=9.7e-06 Score=83.14 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=49.9
Q ss_pred cCHHHHHHHhhccCCcceEEEe----------ccCceEEEEecCHHHHHHHHHhhccCcce----EEEEee
Q 001164 582 ASEAHIRFQIDRFGPLEHFFFF----------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1134)
Q Consensus 582 vte~dL~~~F~~yGpLe~v~~~----------~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r 638 (1134)
-.++||+++|++||.|.+|.+. +.+||+||+|.+.++|.+|+++|+|+.+. ++.|.+
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3678999999999999999996 56799999999999999999999999764 555553
No 209
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.58 E-value=0.00013 Score=68.04 Aligned_cols=66 Identities=11% Similarity=0.105 Sum_probs=51.8
Q ss_pred CceEEeccCC----CccCH----HHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce----EEEEe
Q 001164 570 SKQLWLGSFG----PEASE----AHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1134)
Q Consensus 570 s~~LWVGnL~----~~vte----~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~ 637 (1134)
.-++.|-..+ .+... .+|+..|..||.|..++|...+ +||+|++-+.|.+|++ |+|..++ +|+..
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITIALK 83 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeC
Confidence 3455555554 23334 7899999999999999998866 8999999999999998 9999887 45544
Q ss_pred e
Q 001164 638 D 638 (1134)
Q Consensus 638 r 638 (1134)
.
T Consensus 84 t 84 (91)
T 2dnr_A 84 S 84 (91)
T ss_dssp C
T ss_pred C
Confidence 3
No 210
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=97.54 E-value=6.1e-05 Score=72.68 Aligned_cols=96 Identities=15% Similarity=0.131 Sum_probs=48.3
Q ss_pred eEEEEecCHHHHHHHHHhhccCcceEEEEeeccCCCCcccc-cc---cccccceEEEccCCChhhHHHHHHHHhhccccC
Q 001164 608 FALVEYINIIDAIRAREYIRNHFSWRVKFMDVGLGTKGVIN-GV---AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKG 683 (1134)
Q Consensus 608 fAFVeFr~i~DAi~A~~~L~G~~~~RI~f~r~~lGa~G~~~-Gv---a~~~s~~LwVG~iss~~~keeilhELykfglk~ 683 (1134)
++|.+|.++.-|..|+..|+|... +.+|.++ |. ...+++.||||+|+..+++++|...|..+|...
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~----------~g~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 75 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQ----------MGRGSMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG 75 (135)
T ss_dssp ---------------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCS
T ss_pred cccccccCCCchhhhhhhccCCCC----------CCCCCCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 455555555555666666666521 1111111 11 123688999999999999999999998887554
Q ss_pred Ccee-Ee---cCCCceeeEeecCHHHHHHHHHHH
Q 001164 684 PYMV-TD---LSCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 684 p~~f-tf---lsde~~a~LEFeSeEEAa~ak~~I 713 (1134)
.+.+ ++ -..++.++++|.+.++|..|+..+
T Consensus 76 ~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l 109 (135)
T 2lea_A 76 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 109 (135)
T ss_dssp EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTT
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHc
Confidence 4332 11 123568999999999999997755
No 211
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.31 E-value=6.3e-05 Score=86.12 Aligned_cols=124 Identities=10% Similarity=0.038 Sum_probs=79.3
Q ss_pred HHHHHhhccCCcceEEEe--------ccCceE-----EEEecCHHHHHHHHHhhccCcce-----------------EEE
Q 001164 586 HIRFQIDRFGPLEHFFFF--------PIKGFA-----LVEYINIIDAIRAREYIRNHFSW-----------------RVK 635 (1134)
Q Consensus 586 dL~~~F~~yGpLe~v~~~--------~~rgfA-----FVeFr~i~DAi~A~~~L~G~~~~-----------------RI~ 635 (1134)
+|.++|..+|||..+... ...+|+ |++|.+..+|..+...+...... .+.
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 478999999999887221 123455 88898866654443322221100 111
Q ss_pred EeeccCCCCcccccccccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Ee---cCCCceeeEeecCHHHHHHHHH
Q 001164 636 FMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMA 711 (1134)
Q Consensus 636 f~r~~lGa~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tf---lsde~~a~LEFeSeEEAa~ak~ 711 (1134)
...+.... .+...+++.||||||+..+++++|...|.+||.+..+.+ ++ -...+.++|+|.+.++|..|+.
T Consensus 88 ~~~p~~~~-----~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~ 162 (437)
T 3pgw_S 88 MWDPHNDP-----NAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162 (437)
T ss_pred hcCCcccc-----cccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHH
Confidence 11111000 111346789999999999999999999998875554433 22 1136789999999999999998
Q ss_pred HHH
Q 001164 712 HLR 714 (1134)
Q Consensus 712 ~IR 714 (1134)
.|.
T Consensus 163 ~ln 165 (437)
T 3pgw_S 163 HAD 165 (437)
T ss_pred HcC
Confidence 874
No 212
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.29 E-value=0.00037 Score=65.47 Aligned_cols=62 Identities=8% Similarity=0.080 Sum_probs=52.3
Q ss_pred ccCceEEeccCCCc-----cCH----HHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce
Q 001164 568 SASKQLWLGSFGPE-----ASE----AHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~-----vte----~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~ 632 (1134)
.|.-++.|-.++++ ... .+|.+.|..||.+..|+|...+ +||+|++-++|.+|++ |+|..++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeC
Confidence 45567778777643 222 6799999999999999999988 9999999999999998 9999876
No 213
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.19 E-value=0.00069 Score=60.71 Aligned_cols=61 Identities=11% Similarity=0.197 Sum_probs=50.4
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+++.||||+|+..+++++|...|.+++.... +....++..++++|.+.++|..|+..+.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--v~~~~~~g~afV~f~~~~~A~~A~~~l~ 74 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRT--IDHVKGDSFAYIQYESLDAAQAACAKMR 74 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEE--EEECSSSCCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--EEEeCCCCEEEEEECCHHHHHHHHHHHC
Confidence 347899999999999999999999988764433 3444557899999999999999988774
No 214
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=97.15 E-value=0.00048 Score=67.94 Aligned_cols=104 Identities=14% Similarity=0.060 Sum_probs=47.6
Q ss_pred EEecCHHHHHHHHHhhccCcce-EEEEeeccCCCC---cc-------------cccccccccceEEEccCCChhhHHHHH
Q 001164 611 VEYINIIDAIRAREYIRNHFSW-RVKFMDVGLGTK---GV-------------INGVAVGSCFHVYVGNIPNQWAKDEIL 673 (1134)
Q Consensus 611 VeFr~i~DAi~A~~~L~G~~~~-RI~f~r~~lGa~---G~-------------~~Gva~~~s~~LwVG~iss~~~keeil 673 (1134)
.+|++-+||.+|+..|+++... +-+-.+...+.+ +. .......+++.||||+|+..+++++|.
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7999999999999999998654 111110000000 00 001112357789999999999999999
Q ss_pred HHHhhccccCCceeEec-C---CCceeeEeecCHHHHHHHHHHHH
Q 001164 674 HESYKVVYKGPYMVTDL-S---CEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 674 hELykfglk~p~~ftfl-s---de~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.-|..+|....+.+..- . ..+.++++|.+.++|..|+..+.
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 135 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN 135 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhC
Confidence 88888764443322211 1 25789999999999999988774
No 215
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=97.12 E-value=0.00073 Score=63.46 Aligned_cols=62 Identities=11% Similarity=0.030 Sum_probs=52.5
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
..+++.||||+++..+++++|..-|..||.... +....+++.++++|++.++|..|...+..
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~--v~i~~~kg~AFVef~~~~~A~~Av~~ln~ 79 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISY--VVVMPKKRQALVEFEDVLGACNAVNYAAD 79 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEE--EEEETTTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEE--EEEEcCCCEEEEEECCHHHHHHHHHHhcC
Confidence 348999999999999999999988888775544 34456789999999999999999988853
No 216
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.10 E-value=0.001 Score=62.01 Aligned_cols=61 Identities=13% Similarity=0.074 Sum_probs=51.3
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
.+++.||||+++..+++++|...|..||.... +....+++.++++|++.++|..|+..+..
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~--v~i~~~kg~aFVef~~~~~A~~Ai~~l~~ 73 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICY--VMMMPFKRQALVEFENIDSAKECVTFAAD 73 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEE--EEEETTTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--EEEECCCCEEEEEECCHHHHHHHHHHhcc
Confidence 47999999999999999999999988775444 34455789999999999999999987743
No 217
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.06 E-value=0.00059 Score=63.83 Aligned_cols=61 Identities=13% Similarity=0.022 Sum_probs=50.9
Q ss_pred cccceEEEccCCC-hhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPN-QWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 653 ~~s~~LwVG~iss-~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
.+++.||||+++. .+++++|...|..||.... +....+++.++++|++.+||..|+..+.-
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~--v~i~~~kg~aFVef~~~~~A~~Ai~~l~~ 74 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISN--HLILNKINEAFIEMATTEDAQAAVDYYTT 74 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEE--EEECSSSSCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEE--EEEEcCCCEEEEEECCHHHHHHHHHHHcC
Confidence 4799999999999 9999999988887765444 44556788999999999999999887753
No 218
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.03 E-value=0.00085 Score=59.40 Aligned_cols=67 Identities=16% Similarity=0.173 Sum_probs=50.2
Q ss_pred ccccccccceEEEccCCChhhHHHHHHHHhhccccCCceeEec----CCCceeeEeecCHHHHHHHHHHHH
Q 001164 648 NGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 648 ~Gva~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfl----sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+....+++.|||++|+..+++++|...|.++|....+.+..- ..+..++++|.+.++|..++..+.
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 79 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAIN 79 (94)
T ss_dssp CCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcC
Confidence 3334457999999999999999999988887764443322111 125689999999999999988664
No 219
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.01 E-value=0.00088 Score=64.56 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=51.6
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
.+++.||||+++..+++++|...|..||....+ ....+++.++++|++.++|..|+..+..
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v--~i~~~kG~AFVeF~~~e~A~~Ai~~l~~ 89 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNL--LMLKGKNQAFIEMNTEEAANTMVNYYTS 89 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEE--EEEGGGTEEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE--EEeCCCCEEEEEECCHHHHHHHHHHhcc
Confidence 479999999999999999999999888765543 4445689999999999999999887753
No 220
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.97 E-value=0.00084 Score=62.36 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=50.7
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+++.||||+++..+++++|...|..||.... +....+++.++++|++.++|..|+..+.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~--v~i~~~kg~aFVef~~~~~A~~Ai~~l~ 72 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTN--ILMLKGKNQAFLELATEEAAITMVNYYS 72 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEE--EEEETTTTEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--EEEECCCCEEEEEECCHHHHHHHHHHhc
Confidence 357999999999999999999988887775443 3445678999999999999999988764
No 221
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.95 E-value=0.0014 Score=58.84 Aligned_cols=60 Identities=22% Similarity=0.188 Sum_probs=50.6
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+|+..+++++|..-|.++|.... +....++..++++|.+.++|..|+..+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--v~~~~~kg~afV~f~~~~~a~~a~~~l~ 72 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGE--VFIHKDKGFGFIRLETRTLAEIAKVELD 72 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSE--EEEETTTTEEEEECSSSHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEE--EEEecCCCEEEEEECCHHHHHHHHHHhC
Confidence 47899999999999999999988888774433 4555678999999999999999988774
No 222
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.93 E-value=0.0017 Score=59.39 Aligned_cols=63 Identities=21% Similarity=0.227 Sum_probs=50.0
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCcee-EecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+++.||||+|+..+++++|...|.+++....+.+ ..-..+..++++|.+.++|..|+..+.
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~ 82 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD 82 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcC
Confidence 347899999999999999999999988775544433 222236699999999999999988774
No 223
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.92 E-value=0.0019 Score=57.92 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=51.7
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
...++.||||+++..+++++|...|..+|... +.+..-..+..++++|.+.++|..|+..+.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 77 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQ 77 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhC
Confidence 34689999999999999999999999888665 444334668899999999999999988774
No 224
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.91 E-value=0.0015 Score=59.83 Aligned_cols=62 Identities=15% Similarity=0.058 Sum_probs=48.6
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCcee-EecC--CCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLS--CEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfls--de~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.|||++|+..+++++|..-|..+|....+.+ ++.. .+..++++|.+.++|..++..+.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 77 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 77 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 37899999999999999999999988774444333 2211 14689999999999999988774
No 225
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=96.89 E-value=0.0012 Score=59.06 Aligned_cols=61 Identities=25% Similarity=0.295 Sum_probs=48.0
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhccccCCceeEec----CCCceeeEeecCHHHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfl----sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
+++.||||+|+..+++++|..-|.++|....+.+..- ...+.++++|.+.++|..|+..+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 65 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLN 65 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 5789999999999999999999988774443322111 226789999999999999988774
No 226
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.88 E-value=0.0015 Score=57.67 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=48.6
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+++.||||+++..+++++|..-|..+|....+.+. ++.++++|.+.++|..|+..+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~ 63 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLH 63 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhc
Confidence 3478999999999999999999888887644433332 6899999999999999988774
No 227
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.88 E-value=0.0014 Score=61.98 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=50.7
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+++..+++++|..-|..||.... +....+++.++++|++.++|..|+..++
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~--v~i~~~kGfaFVeF~~~~~A~~Ai~~l~ 73 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LLMLKGKNQAFIEMNTEEAANTMVNYYT 73 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEE--EEEETTTTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--EEEEcCCCEEEEEECCHHHHHHHHHHhc
Confidence 47899999999999999999999988875544 3445578999999999999999988763
No 228
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=96.88 E-value=0.0014 Score=57.01 Aligned_cols=62 Identities=27% Similarity=0.366 Sum_probs=50.1
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhc----cccC----Cc-eeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKV----VYKG----PY-MVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykf----glk~----p~-~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+++.||||+++..+++++|...|.++ |+.. ++ .+....++..++++|.+.++|..|+ .++
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~ 73 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFD 73 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcC
Confidence 4578999999999999999999999887 4211 23 3456677899999999999999997 653
No 229
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=96.88 E-value=0.00091 Score=58.00 Aligned_cols=63 Identities=16% Similarity=0.213 Sum_probs=49.5
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec---CCCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl---sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+++.||||+++..+++++|...|..+|....+.+ .+. ..++.++++|.+.++|..|+..+.
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 70 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 70 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhC
Confidence 457899999999999999999999988774444322 221 136689999999999999988774
No 230
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.84 E-value=0.0018 Score=57.35 Aligned_cols=62 Identities=16% Similarity=0.142 Sum_probs=48.5
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeEec----CCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfl----sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+|+..+++++|..-|.++|....+.+..- .....++++|.+.++|..|+..+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 68 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLN 68 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhC
Confidence 46899999999999999999999988765444333211 124689999999999999988774
No 231
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.83 E-value=0.0017 Score=57.64 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=49.8
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccc-cCCceeEecCCCceeeEeecCHHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVY-KGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfgl-k~p~~ftflsde~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
.+++.||||+++..+++++|...|..+|. ...+.+ ..+..++++|.+.++|..|+..+..
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g 66 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL---LKSGYAFVDYPDQNWAIRAIETLSG 66 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE---EETTEEEECCSCHHHHHHHHHHHTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE---cCCCEEEEEECCHHHHHHHHHHccC
Confidence 46899999999999999999999998875 443333 3578999999999999999887744
No 232
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.83 E-value=0.0014 Score=57.00 Aligned_cols=65 Identities=12% Similarity=0.178 Sum_probs=49.2
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeEec----CCCceeeEeecCHHHHHHHHHHHHHHh
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQHR 717 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfl----sde~~a~LEFeSeEEAa~ak~~IRQ~r 717 (1134)
.+++.||||+++..+++++|..-|.++|....+.+... ..++.++++|.+.++|..|+..+....
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 71 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASG 71 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCe
Confidence 36899999999999999998887777664443322111 125689999999999999998886543
No 233
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.83 E-value=0.0025 Score=57.55 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=49.1
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCceeEec--CCCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL--SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfl--sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+++.||||+|+..+++++|..-|..+|....+.+..- ..+..++++|.+.++|..|+..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 76 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 76 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhC
Confidence 347899999999999999999988887764443322111 236789999999999999988774
No 234
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.80 E-value=0.0025 Score=56.29 Aligned_cols=63 Identities=10% Similarity=-0.045 Sum_probs=49.6
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCceeEec----CCCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfl----sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+++.||||+++..+++++|...|.++|....+.+..- ..+..++++|.+.++|..|+..+.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 78 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN 78 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 347999999999999999999999988775544433221 224579999999999999988774
No 235
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=96.80 E-value=0.0016 Score=59.06 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=48.0
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+++.||||+|+..+++++|..-|..+|.... +... +..++++|.+.++|..|+..+.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~--v~~~--~~~afV~f~~~~~a~~A~~~l~ 66 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLER--VKKL--KDYAFIHFDERDGAVKAMEEMN 66 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEE--EEEC--SSCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--EEEE--CCEEEEEeCCHHHHHHHHHHHC
Confidence 347899999999999999999998888764433 2222 4589999999999999998874
No 236
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.0022 Score=57.75 Aligned_cols=59 Identities=17% Similarity=0.300 Sum_probs=49.8
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.++.||||+|+..+++++|..-|..+|.... +.....++.++++|.+.++|..++..+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~--~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 84 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILD--FKHYPEKGCCFIKYDTHEQAAVCIVALA 84 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSE--EEEETTTTEEEEECSSHHHHHHHHHHHT
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEE--EEEecCCCEEEEEECCHHHHHHHHHHhC
Confidence 4789999999999999999999988775544 3444778999999999999999988774
No 237
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.73 E-value=0.0013 Score=62.68 Aligned_cols=61 Identities=13% Similarity=0.154 Sum_probs=51.1
Q ss_pred cccceEEEccCCCh-hhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQ-WAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 653 ~~s~~LwVG~iss~-~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
.+++.||||+++.. +++++|...|..||.... +....+++.++++|++.++|..|+..+..
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~--v~i~~~kg~aFVef~~~~~A~~Ai~~l~~ 84 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKN--YILMRMKSQAFIEMETREDAMAMVDHCLK 84 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSE--EEEETTTTEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEE--EEEecCCCEEEEEECCHHHHHHHHHHhcc
Confidence 37999999999998 999999988888775554 34456789999999999999999987753
No 238
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.72 E-value=0.0032 Score=56.80 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=49.6
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeEe--cCCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD--LSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftf--lsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+|+..+++++|..-|..+|....+.+.. ...+..++++|.+.++|..|+..+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 76 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMN 76 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhC
Confidence 4789999999999999999999998887544443321 1246789999999999999988774
No 239
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=96.71 E-value=0.0018 Score=56.31 Aligned_cols=61 Identities=21% Similarity=0.275 Sum_probs=48.7
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec---C-CCceeeEeecCHHHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---S-CEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl---s-de~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.++.||||+++..+++++|...|..+|....+.+ .+. . ..+.++++|.+.++|..|+..+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 68 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMD 68 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcC
Confidence 3678999999999999999999988775544433 222 1 56789999999999999988774
No 240
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.71 E-value=0.0022 Score=57.39 Aligned_cols=63 Identities=11% Similarity=0.134 Sum_probs=49.6
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccC-Ccee-Eec---CCCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKG-PYMV-TDL---SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~-p~~f-tfl---sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+++.||||+++..+++++|...|..+|... .+.+ ++- .....++++|.+.++|..|+..+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 73 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKIN 73 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHc
Confidence 45799999999999999999999999887554 4433 221 124689999999999999987663
No 241
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.71 E-value=0.0018 Score=57.88 Aligned_cols=63 Identities=14% Similarity=0.087 Sum_probs=48.7
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCceeEec----CCCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfl----sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+++.||||+++..+++++|...|..+|....+.+..- ..+..++++|.+.++|..|+..+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 71 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVD 71 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhC
Confidence 347899999999999999999999988764443322111 124789999999999999987764
No 242
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=96.70 E-value=0.0023 Score=57.87 Aligned_cols=62 Identities=19% Similarity=0.285 Sum_probs=48.7
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCcee-EecC--CCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLS--CEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfls--de~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+|+..+++++|..-|..+|....+.+ .+.. .++.++++|.+.++|..|+..+.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 77 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH 77 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHc
Confidence 36899999999999999999999988775444433 2211 15789999999999999988773
No 243
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=96.68 E-value=0.0024 Score=59.16 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=49.3
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+++..+++++|...|..+|....+.+. ++.++++|.+.++|..|+..+.
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~ 86 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVH 86 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcC
Confidence 468999999999999999999999888755544333 7899999999999999988774
No 244
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=96.64 E-value=0.0025 Score=55.46 Aligned_cols=62 Identities=21% Similarity=0.252 Sum_probs=47.7
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeEec----CCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfl----sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+++..+++++|..-|..+|....+.+..- ..+..++++|.+.++|..|+..+.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 69 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 69 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 46889999999999999999999988775544433221 124689999999999999988774
No 245
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=96.64 E-value=0.0026 Score=62.12 Aligned_cols=100 Identities=10% Similarity=0.092 Sum_probs=48.7
Q ss_pred CceEEEEecCHHHHHHHHHhhccCcceEEEEeeccCCCCcccccccccccceEEEccCCChhhHHHHHHHHhhccc---c
Q 001164 606 KGFALVEYINIIDAIRAREYIRNHFSWRVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVY---K 682 (1134)
Q Consensus 606 rgfAFVeFr~i~DAi~A~~~L~G~~~~RI~f~r~~lGa~G~~~Gva~~~s~~LwVG~iss~~~keeilhELykfgl---k 682 (1134)
+++.|.+|..++.++....-+.... ...+.|..+.+.+-.....+.||||+++..+++++|..-|..++. .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~------gg~~~g~g~~~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v 74 (136)
T 2hgl_A 1 MGSSHHHHHHSSGLVPRGSHMASMT------GGQQMGRGSMMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGA 74 (136)
T ss_dssp ----------------------------------------CCSCSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSS
T ss_pred CccccccccchHHHHhhccCCCccc------CCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCce
Confidence 4788899999999988877766642 111111111122222346889999999999999999999988876 3
Q ss_pred CCcee-Eec--CCCceeeEeecCHHHHHHHHH
Q 001164 683 GPYMV-TDL--SCEGALLMEFRTPEEATTAMA 711 (1134)
Q Consensus 683 ~p~~f-tfl--sde~~a~LEFeSeEEAa~ak~ 711 (1134)
..+.+ ++- ..+..++++|.+.++|..|+.
T Consensus 75 ~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~ 106 (136)
T 2hgl_A 75 AGVHFIYTREGRQSGEAFVELGSEDDVKMALK 106 (136)
T ss_dssp TTEEEEECSSSCEEEEEEEECSSHHHHHHHHT
T ss_pred eEEEEEECCCCCCCeEEEEEECCHHHHHHHHh
Confidence 44433 222 225689999999999999876
No 246
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=96.63 E-value=0.0027 Score=54.77 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=46.5
Q ss_pred cceEEEccCCChhhHHHHHHHHhhccccCCceeEec----CCCceeeEeecCHHHHHHHHHHHH
Q 001164 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 655 s~~LwVG~iss~~~keeilhELykfglk~p~~ftfl----sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
+..||||+++..+++++|...|..+|....+.+..- ..++.++++|.+.++|..|+..+.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 64 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 64 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhc
Confidence 468999999999999999999988764444333211 115689999999999999988774
No 247
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=96.63 E-value=0.0029 Score=57.31 Aligned_cols=62 Identities=18% Similarity=0.162 Sum_probs=48.7
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhccccCCceeEec----CCCceeeEeecCHHHHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfl----sde~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
+++.||||+|+..+++++|..-|..+|....+.+..- ...+.++++|.+.++|..|+..+..
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 87 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG 87 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcC
Confidence 6789999999999999999998888775544433221 1257899999999999999887743
No 248
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.63 E-value=0.004 Score=56.33 Aligned_cols=59 Identities=22% Similarity=0.125 Sum_probs=48.0
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCC-------CceeeEeecCHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSC-------EGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsd-------e~~a~LEFeSeEEAa~ak~~I 713 (1134)
.+++.||||+|+..+++++|..-|..+|....+ ....+ +..++++|.+.++|..|+..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v--~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTV--RLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEE--ECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEE--EEecCCCCCCCcCceEEEEECCHHHHHHHHHHh
Confidence 478999999999999999999999887644333 22222 678999999999999998877
No 249
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.0032 Score=56.53 Aligned_cols=58 Identities=12% Similarity=0.174 Sum_probs=47.8
Q ss_pred cccceEEEccCCC-hhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPN-QWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss-~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+++. .+++++|...|..+|....+.+ .++.++++|.+.++|..|+..+.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~ 66 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIECES 66 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE----ETTEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcC
Confidence 4789999999997 9999999998888775544333 27899999999999999988773
No 250
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=96.63 E-value=0.0031 Score=57.89 Aligned_cols=64 Identities=11% Similarity=0.086 Sum_probs=50.6
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCceeEec------CCCceeeEeecCHHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL------SCEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfl------sde~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
...-+.|||||++..+++|+|...|..||......++.. ..++.++++|.+.++|..|+..++.
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng 75 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQS 75 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHS
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcC
Confidence 345678999999999999999999998885443333322 2356899999999999999988853
No 251
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.62 E-value=0.0036 Score=56.28 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=50.0
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCceeEec----CCCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfl----sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+++.||||+++..+++++|...|..+|....+.+..- ..+..++++|.+.++|..|+..+.
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 75 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 447899999999999999999999998875554433111 135689999999999999988774
No 252
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.62 E-value=0.0027 Score=56.34 Aligned_cols=62 Identities=10% Similarity=0.171 Sum_probs=49.5
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCc-ee-Ee---cCCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MV-TD---LSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~-~f-tf---lsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+|+..+++++|..-|..+|....+ .+ ++ -.....++++|.+.++|..|+..+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 69 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN 69 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcC
Confidence 368999999999999999999999988766554 33 22 1125789999999999999987663
No 253
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=96.62 E-value=0.0029 Score=55.68 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=49.6
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCceeEecC--CCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS--CEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfls--de~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+++.||||+++..+++++|...|..+|....+.+.... .+..++++|.+.++|..|+..+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 69 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMN 69 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 3478999999999999999999999887754444332211 25689999999999999988774
No 254
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.61 E-value=0.0019 Score=56.16 Aligned_cols=59 Identities=15% Similarity=0.248 Sum_probs=49.1
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~I 713 (1134)
..++.||||+++..+++++|..-|..+|.... +....+++.++++|.+.++|..++..+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~--~~~~~~kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRT--ITVVQRQQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEE--EEEEGGGTEEEEEESSHHHHHHHHHTT
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeE--EEEECCCCEEEEEECCHHHHHHHHHHh
Confidence 46899999999999999999998888764433 444557899999999999999998765
No 255
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.61 E-value=0.0027 Score=57.10 Aligned_cols=63 Identities=16% Similarity=0.199 Sum_probs=50.7
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Ee---cCCCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tf---lsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+++.||||+|+..+++++|...|..+|....+.+ .+ -..++.++++|.+.++|..|+..+.
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 75 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 457999999999999999999999988876555433 22 1236789999999999999988774
No 256
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=96.60 E-value=0.0028 Score=57.36 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=50.6
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Ee---cCCCceeeEeecCHHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tf---lsde~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
..+++.||||+|+..+++++|...|.++|....+.+ .+ -..+..++++|.+.++|..|+..+..
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 77 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHE 77 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 347899999999999999999999998875554433 21 12357899999999999999887743
No 257
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.60 E-value=0.0031 Score=57.93 Aligned_cols=59 Identities=19% Similarity=0.088 Sum_probs=47.1
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..++.||||+|+..+++++|..-|.+++....+ ....+ ..++++|.+.++|..|+..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~--~i~~~-g~afV~f~~~~~a~~Ai~~l~ 71 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYA--DVYRD-GTGVVEFVRKEDMTYAVRKLD 71 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEE--EEETT-TEEEEEESSHHHHHHHHHHSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEE--EEecC-CEEEEEECCHHHHHHHHHHHC
Confidence 368999999999999999999888877633322 22233 899999999999999988763
No 258
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.60 E-value=0.0019 Score=57.63 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=49.1
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec------CCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL------SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl------sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+++..+++++|..-|.++|....+.+ .+. ..+..++++|.+.++|..|+..+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~ 71 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQ 71 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHST
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhC
Confidence 46899999999999999999999988875544433 222 235689999999999999988764
No 259
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=96.60 E-value=0.0032 Score=55.80 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=49.1
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCcee-EecC--CCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLS--CEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfls--de~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+++.||||+|+..+++++|...|..+|....+.+ .+.. .+..++++|.+.++|..|+..+.
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 78 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 78 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhC
Confidence 347899999999999999999999988775444333 2211 14689999999999999988774
No 260
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.60 E-value=0.0046 Score=56.71 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=49.5
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccC--------Ccee-Ee-c--CCCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKG--------PYMV-TD-L--SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~--------p~~f-tf-l--sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
...++.||||+|+..+++++|...|..+|... .+.+ ++ . ..+..++++|.+.++|..|+..++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 86 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFD 86 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcC
Confidence 34789999999999999999999998887555 2322 22 1 225689999999999999988774
No 261
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.60 E-value=0.003 Score=55.98 Aligned_cols=59 Identities=15% Similarity=0.094 Sum_probs=48.2
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+++.||||+++..+++++|..-|..+|....+ ... +..++++|.+.++|..|+..+.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v--~~~--~~~afV~f~~~~~a~~A~~~l~ 65 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIEC--DIV--KDYAFVHMERAEDAVEAIRGLD 65 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEE--EEC--SSEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE--EEE--CCEEEEEECCHHHHHHHHHHhC
Confidence 3478999999999999999999998887754443 333 3489999999999999988774
No 262
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=96.58 E-value=0.0039 Score=55.24 Aligned_cols=62 Identities=24% Similarity=0.208 Sum_probs=48.4
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCcee-EecC---CCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLS---CEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfls---de~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+|+..+++++|..-|..++....+.+ .+-. .+..++++|.+.++|..|+..++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 78 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN 78 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhC
Confidence 35799999999999999999999988876554433 3322 24679999999999999988774
No 263
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=96.57 E-value=0.0044 Score=55.09 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=46.2
Q ss_pred cccceEEEccCCChhhHHHHHHHHhh-ccccCCcee-Eec---CCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYK-VVYKGPYMV-TDL---SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELyk-fglk~p~~f-tfl---sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+++..+++++|...|+. |...+.+.- ... ..++.++++|.+.++|..|+..+.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~ 72 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQ 72 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhC
Confidence 47899999999999999999954444 333444322 222 346789999999999999988774
No 264
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=96.56 E-value=0.003 Score=58.80 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=47.5
Q ss_pred cceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec-CCCceeeEeecCHHHHHHHHHHHH
Q 001164 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL-SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 655 s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl-sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
+..||||+|+..+++++|..-|..+|....+.+ ++. ..++.++++|.+.++|..|+..+.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~ 66 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 66 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcC
Confidence 567999999999999999999988875544433 221 125689999999999999988774
No 265
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.55 E-value=0.0031 Score=57.71 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=49.7
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+.||||+++..+++++|..-|..+|... .+....+++.++++|.+.++|..|+..+.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~--~v~i~~~~g~afV~f~~~~~a~~A~~~l~ 82 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIM--EIRVFPEKGYSFVRFSTHESAAHAIVSVN 82 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEE--EEEEETTTTEEEEEESSHHHHHHHHHHHT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEeCCCCEEEEEECCHHHHHHHHHHcC
Confidence 578999999999999999999998877433 34555668999999999999999988774
No 266
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=96.55 E-value=0.0035 Score=56.29 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=49.3
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCC--------cee-Eec---CCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP--------YMV-TDL---SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p--------~~f-tfl---sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+.+.||||+++..+++++|...|.++|.... +.+ ++- ..++.++++|.+.++|..|+..+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 36899999999999999999999998876554 333 221 125689999999999999988774
No 267
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=96.54 E-value=0.0028 Score=58.35 Aligned_cols=62 Identities=18% Similarity=0.167 Sum_probs=50.4
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCcee-EecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+++..+++++|...|..+|....+.+ .+-...+.++++|.+.++|..|+..+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~ 68 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLS 68 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcC
Confidence 46899999999999999999999988775544433 333446799999999999999988774
No 268
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.53 E-value=0.002 Score=58.17 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=48.8
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeEec--CCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL--SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfl--sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+|+..+++++|...|..+|....+.+..- .....++++|.+.++|..|+..+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 76 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 76 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhC
Confidence 47999999999999999999888887765444333211 235689999999999999988774
No 269
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=96.53 E-value=0.0041 Score=55.93 Aligned_cols=58 Identities=24% Similarity=0.214 Sum_probs=47.7
Q ss_pred ceEEEccCCChhhHHHHHHHHhhccccCCceeEecC-CCceeeEeecCHHHHHHHHHHHHH
Q 001164 656 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS-CEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 656 ~~LwVG~iss~~~keeilhELykfglk~p~~ftfls-de~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
+.||||+++..+++++|...|.++|....+ .... .+..++++|.+.++|..|+..+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v--~i~~~~~g~afV~f~~~~~a~~A~~~l~g 59 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDG 59 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEE--EEESSSSSEEEEECSSHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEE--EEeeCCCCEEEEEECCHHHHHHHHHHHCC
Confidence 469999999999999999999888754443 3333 488999999999999999888754
No 270
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=96.52 E-value=0.0035 Score=56.85 Aligned_cols=58 Identities=12% Similarity=0.167 Sum_probs=47.6
Q ss_pred cccceEEEccCCC-hhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPN-QWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss-~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+++. .+++++|...|..+|....+.+ .++.++++|.+.++|..|+..+.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~Ai~~l~ 78 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIEXES 78 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE----CSSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcC
Confidence 4799999999997 9999999998887764443322 37899999999999999988773
No 271
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.51 E-value=0.0038 Score=56.17 Aligned_cols=62 Identities=15% Similarity=0.137 Sum_probs=45.2
Q ss_pred cccceEEEccCCChhhHHHHH----HHHhhccccCCcee-EecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEIL----HESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeil----hELykfglk~p~~f-tflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
...+.||||+++..+++++|. .-|.++|....+.+ ++-..+..++++|.+.++|..|+..+.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~ 73 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLH 73 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhC
Confidence 467899999999999999999 44444443322222 111126789999999999999988774
No 272
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.50 E-value=0.0028 Score=56.97 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=47.2
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+++.||||+|+..+++++|..-|..++...-.....-..+..++++|.+.++|..|+..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 74 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 74 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhC
Confidence 347999999999999999999888877653311100111236789999999999999988764
No 273
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.49 E-value=0.0019 Score=59.92 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=48.7
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCceeEec------CCCceeeEeecCHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL------SCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfl------sde~~a~LEFeSeEEAa~ak~~I 713 (1134)
...++.||||+++..+++++|..-|.++|......+.+. ..++.++++|.+.++|..|+..+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 346899999999999999999998888875552122221 34679999999999999998766
No 274
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.48 E-value=0.003 Score=55.78 Aligned_cols=58 Identities=16% Similarity=0.243 Sum_probs=47.3
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+++..+++++|..-|..+|....+ ... +..++++|.+.++|..|+..+.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~--~~~--~~~afV~f~~~~~a~~A~~~l~ 64 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIEC--DVV--KDYAFVHMEKEADAKAAIAQLN 64 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEE--EEC--SSCEEEEESCHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEE--EEE--CCEEEEEECCHHHHHHHHHHhC
Confidence 468999999999999999999999887654332 223 3489999999999999988774
No 275
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=96.48 E-value=0.0032 Score=57.94 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=48.9
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeEec----CCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfl----sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+|+..+++++|...|..+|....+.+..- .....++++|.+.++|..|+..+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 78 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 78 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 47899999999999999999999988875544433211 114689999999999999988764
No 276
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.48 E-value=0.0033 Score=57.22 Aligned_cols=62 Identities=15% Similarity=0.090 Sum_probs=49.2
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec---CCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl---sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+|+..+++++|..-|..+|....+.+ .+- ...+.++++|.+.++|..|+..+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 47899999999999999999999988774433322 111 236789999999999999998874
No 277
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.47 E-value=0.0023 Score=61.38 Aligned_cols=61 Identities=18% Similarity=0.157 Sum_probs=51.1
Q ss_pred cccceEEE--ccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHHH
Q 001164 653 GSCFHVYV--GNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 653 ~~s~~LwV--G~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
.+++.||| |+++..+++|+|...|.+||.... +....++..++++|++.+||..|+..|.-
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~--v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG 85 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDA--LLMPPNKPYSFARYRTTEESKRAYVTLNG 85 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEE--EECCTTCSCEEEEESSHHHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEE--EEEeCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 47899999 889999999999999999885443 33345688999999999999999887743
No 278
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.47 E-value=0.0031 Score=57.91 Aligned_cols=62 Identities=13% Similarity=0.099 Sum_probs=49.2
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCc--ee--EecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY--MV--TDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~--~f--tflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+|+..+++++|..-|..+|....+ .+ ..-..++.++++|.+.++|..|+..+.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 88 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVN 88 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHST
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 368999999999999999999988888765433 22 222346799999999999999988764
No 279
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=96.47 E-value=0.0034 Score=57.58 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=48.2
Q ss_pred ccceEEEccCCCh-hhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQ-WAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 654 ~s~~LwVG~iss~-~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.++.||||+++.. +++++|..-|..+|....+.+ .+..++++|++.++|..|+..+.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~ 83 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGEN 83 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHT
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcC
Confidence 4689999999999 999999998988775554433 57899999999999999988774
No 280
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.47 E-value=0.0025 Score=57.52 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=48.6
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeE-e---cCCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ft-f---lsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+|+..+++++|...|..+|....+.+. + -..++.++++|.+.++|..|+..+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 76 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMD 76 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcC
Confidence 468999999999999999999999887644433221 1 1235789999999999999988774
No 281
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=96.46 E-value=0.0033 Score=56.43 Aligned_cols=59 Identities=17% Similarity=0.117 Sum_probs=46.9
Q ss_pred cceEEEccCCChhhHHHHHHHHhhcc-ccCCcee-Ee---cCCCceeeEeecCHHHHHHHHHHH
Q 001164 655 CFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 655 s~~LwVG~iss~~~keeilhELykfg-lk~p~~f-tf---lsde~~a~LEFeSeEEAa~ak~~I 713 (1134)
|+.|||+|++..+++++|...|..+| ....+.+ ++ -..++.++++|.+.++|.+|+..+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~ 64 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEAN 64 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhc
Confidence 68899999999999999999999987 3444322 22 234678999999999999987643
No 282
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.43 E-value=0.0029 Score=57.53 Aligned_cols=61 Identities=25% Similarity=0.336 Sum_probs=47.3
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccc-cCCceeE--ec---CCCceeeEeecCHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVY-KGPYMVT--DL---SCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfgl-k~p~~ft--fl---sde~~a~LEFeSeEEAa~ak~~I 713 (1134)
.+++.||||+++..+++++|...|.++|. ...+.+. +. ..+..++++|.+.++|..|+..+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 72 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKL 72 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTT
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHh
Confidence 36899999999999999999999988753 3332221 11 35779999999999999987755
No 283
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.43 E-value=0.0048 Score=58.88 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=59.0
Q ss_pred CceEEeccCCCccC-----HHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcce----EEEEeec
Q 001164 570 SKQLWLGSFGPEAS-----EAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1134)
Q Consensus 570 s~~LWVGnL~~~vt-----e~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~----RI~f~r~ 639 (1134)
.++|.|-||..++- ++.+|++|..|+++-+|-.+++=.=..|.|.+.++|++||..|+|..+. |+.|+++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 46789999977763 3678999999999999998886556799999999999999999999765 7777753
No 284
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=96.41 E-value=0.0055 Score=56.47 Aligned_cols=61 Identities=10% Similarity=0.147 Sum_probs=48.7
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhccccCCceeEecC----CCceeeEeecCHHHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS----CEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfls----de~~a~LEFeSeEEAa~ak~~IR 714 (1134)
+++.||||+|+..+++++|...|.++|....+.+..-. .++.++++|.+.++|..|+..+.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 88 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMN 88 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcC
Confidence 57999999999999999999999988765554332211 23579999999999999988774
No 285
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.39 E-value=0.0044 Score=55.53 Aligned_cols=61 Identities=16% Similarity=0.222 Sum_probs=47.6
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Ee---cCCCceeeEeecCHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tf---lsde~~a~LEFeSeEEAa~ak~~I 713 (1134)
..+++.||||+|+..+++++|..-|..+|....+.+ ++ -..++.++++|.+.++|..|+. +
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~ 71 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-M 71 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-H
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-h
Confidence 347899999999999999999998888764444333 11 1136789999999999999986 5
No 286
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.39 E-value=0.0047 Score=54.94 Aligned_cols=62 Identities=13% Similarity=0.091 Sum_probs=47.1
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhccccCCc-eeEecCCCceeeEeecCHHHHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MVTDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk~p~-~ftflsde~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
.++.||||+++..+++++|..-|..+|....+ .+..-.....++++|.+.++|..|+..++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g 76 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNG 76 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 58899999999999999999888887754443 122222233399999999999999887743
No 287
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.38 E-value=0.0029 Score=58.45 Aligned_cols=64 Identities=16% Similarity=0.114 Sum_probs=48.2
Q ss_pred cccccceEEEccCCChhhHHHHH---HHHhhccccCCceeE-ec------CCCceeeEeecCHHHHHHHHHHHH
Q 001164 651 AVGSCFHVYVGNIPNQWAKDEIL---HESYKVVYKGPYMVT-DL------SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 651 a~~~s~~LwVG~iss~~~keeil---hELykfglk~p~~ft-fl------sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+...+.||||+|+..+++++|. ..|.++|....+.+. +. ..+..++++|.+.++|..|+..|.
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ln 84 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVN 84 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhC
Confidence 34578999999999999999998 666666644443331 11 123699999999999999998874
No 288
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.38 E-value=0.0044 Score=55.64 Aligned_cols=59 Identities=24% Similarity=0.246 Sum_probs=47.5
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCc-eeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~-~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+++..+++++|...|.+++. +.+ .+.. .+..++++|.+.++|..|+..+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~-g~v~~~~~--~~g~afV~f~~~~~A~~A~~~l~ 72 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKP-GAVERVKK--IRDYAFVHFSNREDAVEAMKALN 72 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTST-TCEEEEEE--CSSEEEEEESSHHHHHHHHHHHS
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCC-cceEEEEE--eCCeEEEEeCCHHHHHHHHHHhC
Confidence 47899999999999999999999988733 232 2222 26799999999999999988774
No 289
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.37 E-value=0.0048 Score=56.92 Aligned_cols=63 Identities=14% Similarity=0.107 Sum_probs=50.7
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Ee-cCCCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD-LSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tf-lsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
...++.||||+++..+++++|..-|.++|....+.+ ++ -..++.++++|.+.++|..|+..+.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~ 90 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 90 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcC
Confidence 347899999999999999999999998876655433 11 1237899999999999999988774
No 290
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.37 E-value=0.0075 Score=53.78 Aligned_cols=63 Identities=24% Similarity=0.194 Sum_probs=49.7
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCcee-EecC---CCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLS---CEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfls---de~~a~LEFeSeEEAa~ak~~IR 714 (1134)
....+.||||+++..+++++|..-|..++....+.+ .+-. .+..++++|.+.++|..|+..+.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 78 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN 78 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 346789999999999999999999988876554423 3322 25789999999999999988764
No 291
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.36 E-value=0.0038 Score=56.21 Aligned_cols=62 Identities=26% Similarity=0.298 Sum_probs=49.2
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeE-ec---CCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-DL---SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ft-fl---sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+++..+++++|...|..+|....+.+. +- ..++.++++|.+.++|..|+..+.
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 71 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLN 71 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSS
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 468999999999999999999999988755554332 21 115789999999999999987663
No 292
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=96.35 E-value=0.0069 Score=56.66 Aligned_cols=64 Identities=16% Similarity=0.067 Sum_probs=50.4
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCceeEe-c--CCCceeeEeecCHHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD-L--SCEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftf-l--sde~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
..+++.||||+|+..+++++|...|.++|....+.+.. . ..++.++++|.+.++|..|+..+..
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 98 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKG 98 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCC
Confidence 45789999999999999999999998887554443321 1 1357899999999999999887743
No 293
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=96.35 E-value=0.0045 Score=56.10 Aligned_cols=63 Identities=17% Similarity=0.077 Sum_probs=49.4
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec--CCCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL--SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl--sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+++.|||++++..+++++|..-|..+|....+.+ .+. .....++++|.+.++|..|+..+.
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 91 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 91 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 347899999999999999999999988775544333 222 125689999999999999988774
No 294
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.35 E-value=0.0047 Score=57.37 Aligned_cols=59 Identities=25% Similarity=0.182 Sum_probs=49.6
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
+++.||||+++..+++++|...|.+||.... +....+++.++++|.+.++|..|+..+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--v~i~~~~g~afV~f~~~~~A~~Ai~~l~ 67 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGR--VLLPEGGITAIVEFLEPLEARKAFRHLA 67 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEE--EECCSSSSCEEEEESCHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--EEEeCCCCEEEEEeCCHHHHHHHHHHhC
Confidence 6789999999999999999999988764433 3444578899999999999999988884
No 295
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.35 E-value=0.0034 Score=56.63 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=47.6
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeEec----CCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfl----sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+|+..+++++|...|..+|....+.+..- .....++++|.+.++|..|+..+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 78 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVS 78 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcC
Confidence 37899999999999999999888887764444333211 124579999999999999988764
No 296
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=96.34 E-value=0.0046 Score=57.78 Aligned_cols=62 Identities=10% Similarity=-0.025 Sum_probs=50.2
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec---CCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl---sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+.+.||||+++..+++++|...|.++|....+.+ ++- ..++.++++|++.++|..|+..++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ln 69 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLH 69 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhC
Confidence 47899999999999999999999988876555433 222 235689999999999999998885
No 297
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.34 E-value=0.006 Score=54.77 Aligned_cols=62 Identities=13% Similarity=0.187 Sum_probs=48.7
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCcee-EecC--CCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLS--CEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfls--de~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+|+..+++++|..-|..+|....+.+ .+.. .+..++++|.+.++|..|+..+.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 79 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMD 79 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhC
Confidence 46899999999999999999999988775444333 2221 23789999999999999988774
No 298
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.33 E-value=0.007 Score=54.58 Aligned_cols=61 Identities=16% Similarity=0.103 Sum_probs=47.1
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec---CCCceeeEeecCHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATTAMAH 712 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl---sde~~a~LEFeSeEEAa~ak~~ 712 (1134)
..+.+.||||+|+..+++++|..-|..+|....+.+ .+- ..+..++++|.+.++|..|+..
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 347899999999999999999999988765444333 221 1245899999999999998763
No 299
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=96.29 E-value=0.0055 Score=57.73 Aligned_cols=63 Identities=16% Similarity=0.199 Sum_probs=49.1
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Ee---cCCCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tf---lsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+.+.||||+|+..+++++|...|.++|....+.+ .+ -..+..++++|.+.++|.+|+..+.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 126 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 126 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHST
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhC
Confidence 347999999999999999999999988764444322 11 1236789999999999999987663
No 300
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=96.29 E-value=0.0039 Score=59.19 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=49.4
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCcee-EecC---CCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLS---CEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfls---de~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..++.||||+|+..+++++|...|.++|....+.+ ++-. .++.++++|.+.++|..|+..+.
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 105 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLN 105 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 46899999999999999999999998875554433 2221 25689999999999999988764
No 301
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.26 E-value=0.0042 Score=56.11 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=47.8
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec---CCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl---sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+|+..+++++|...|..+|....+.+ .+. ..+..++++|.+.++|..|+..+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 78 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMD 78 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhC
Confidence 47899999999999999999999988764433322 111 124589999999999999987663
No 302
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=96.24 E-value=0.00073 Score=74.42 Aligned_cols=8 Identities=25% Similarity=0.551 Sum_probs=3.4
Q ss_pred HHHHHHhh
Q 001164 347 SRYKKLCN 354 (1134)
Q Consensus 347 ~~~kklc~ 354 (1134)
-||-.+|.
T Consensus 132 dRy~aI~~ 139 (448)
T 2z73_A 132 DRYNVIGR 139 (448)
T ss_dssp HHHHHTTS
T ss_pred HHHHhccc
Confidence 34444443
No 303
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=96.23 E-value=0.0062 Score=55.67 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=46.5
Q ss_pred cceEEEccCCChhhHHHHHHHHhhccccCCcee-EecC---CCceeeEeecCHHHHHHHHHHHH
Q 001164 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLS---CEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 655 s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfls---de~~a~LEFeSeEEAa~ak~~IR 714 (1134)
...||||+|+..+++++|..-|..+|....+.+ ++-. .++.++++|.+.++|.+|+..+.
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln 82 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLN 82 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhC
Confidence 457999999999999999999988775444333 2221 24578999999999999988774
No 304
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=96.23 E-value=0.0061 Score=55.62 Aligned_cols=62 Identities=21% Similarity=0.193 Sum_probs=48.3
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec---CCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl---sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+++..+++++|..-|..+|....+.+ .+- ...+.++++|.+.++|..|+..+.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 89 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN 89 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC
Confidence 36889999999999999999999988764443322 111 125789999999999999988774
No 305
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=96.23 E-value=0.0057 Score=57.10 Aligned_cols=62 Identities=19% Similarity=0.197 Sum_probs=48.2
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec---CCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl---sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+|+..+++++|...|..+|....+.+ .+- ...+.++++|.+.++|..|+..+.
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 85 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN 85 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 36889999999999999999999888764443322 111 126789999999999999998774
No 306
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.23 E-value=0.0069 Score=55.91 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=47.7
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Ee---cCCCceeeEeecCHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tf---lsde~~a~LEFeSeEEAa~ak~~I 713 (1134)
..+.+.|||++|+..+++++|...|..++....+.+ ++ -..+..++++|.+.++|..|+..+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~ 79 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 79 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhC
Confidence 457999999999999999999999988765443322 11 112468999999999999987755
No 307
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.22 E-value=0.0033 Score=55.32 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=43.1
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATT 708 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ 708 (1134)
.+++.||||+++..+++++|..-|..+|....+.+. ...++.++++|.+.++|..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-~~~~g~afV~f~~~~~a~~ 57 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIP-KPFRAFAFVTFADDQIAQS 57 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECC-SSCCSCCEEECSCHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEe-cCCCCEEEEEECCHHHHHH
Confidence 368999999999999999999888877654443221 1247899999999999864
No 308
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=96.18 E-value=0.0064 Score=56.90 Aligned_cols=61 Identities=11% Similarity=0.144 Sum_probs=48.3
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeEec---CCCceeeEeecCHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL---SCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfl---sde~~a~LEFeSeEEAa~ak~~I 713 (1134)
..++.||||+|+..+++++|..-|..+|....+.+..- ...+.++++|.+.++|..|+..+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l 68 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDM 68 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 46789999999999999999999988876554433211 12478999999999999998765
No 309
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.16 E-value=0.0075 Score=54.60 Aligned_cols=61 Identities=11% Similarity=0.116 Sum_probs=47.4
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCceeEec----CCCceeeEeecCHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAH 712 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfl----sde~~a~LEFeSeEEAa~ak~~ 712 (1134)
..+.+.||||+|+..+++++|...|.++|....+.+..- ..+..++++|.+.++|..|+..
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh
Confidence 457899999999999999999999988775444333221 1246899999999999998764
No 310
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=96.16 E-value=0.0037 Score=58.32 Aligned_cols=58 Identities=19% Similarity=0.109 Sum_probs=45.3
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.++.||||+|+..+++++|...|.++|.... +....+ ..++++|++.++|..|+..|.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--~~i~~~-g~afV~f~~~~~a~~Ai~~l~ 72 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCY--ADVYRD-GTGVVEFVRKEDMTYAVRKLD 72 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEE--EEECTT-SEEEEEESSHHHHHHHHHHHT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--EEEecC-CEEEEEECCHHHHHHHHHHhC
Confidence 5789999999999999999988887663322 222333 899999999999999988774
No 311
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=96.15 E-value=0.0062 Score=58.32 Aligned_cols=62 Identities=10% Similarity=-0.037 Sum_probs=49.5
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeEec----CCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfl----sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+|+..+++++|...|.++|....+.+..- ..++.++++|.+.++|..|+..+.
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ln 109 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN 109 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 47999999999999999999999988775544433211 236789999999999999988774
No 312
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=96.15 E-value=0.007 Score=55.97 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=48.7
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec---CCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl---sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+++..+++++|..-|.++|....+.+ ++- ..++.++++|.+.++|..|+..+.
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~ 89 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLN 89 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 46899999999999999999999988775444333 221 125689999999999999988774
No 313
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=96.12 E-value=0.0066 Score=53.00 Aligned_cols=60 Identities=10% Similarity=0.078 Sum_probs=46.4
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeEec----CCCceeeEeecCHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAH 712 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfl----sde~~a~LEFeSeEEAa~ak~~ 712 (1134)
.+++.||||+++..+++++|..-|..+|....+.+..- ..++.++++|.+.++|..|+..
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh
Confidence 47899999999999999999999988775444433211 1256899999999999998753
No 314
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=96.12 E-value=0.0071 Score=58.37 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=47.1
Q ss_pred cccceEEEccCCChhhHHHHHHHHhh-ccccCCc-ee---EecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYK-VVYKGPY-MV---TDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELyk-fglk~p~-~f---tflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+++..++++++..+|+. |...|++ .+ ..-..++.++++|.+.++|..|+..+.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~ln 93 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQ 93 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHST
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHC
Confidence 47899999999999999988776655 4444444 12 122457899999999999999988764
No 315
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.11 E-value=0.0052 Score=54.64 Aligned_cols=62 Identities=15% Similarity=0.167 Sum_probs=48.0
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+++.||||+++..+++++|..-|..++-...+ ...-..++.++++|.+.++|..|+..+.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~ 74 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQ 74 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 3478999999999999999999988887644332 1111235689999999999999988663
No 316
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.09 E-value=0.0058 Score=55.11 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=49.0
Q ss_pred cccceEEEccCCChhhHHHHHHHHhh-ccccCCcee-EecC--CCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYK-VVYKGPYMV-TDLS--CEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELyk-fglk~p~~f-tfls--de~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+|+..+++++|..-|.. +|....+.+ ++.. .++.++++|.+.++|..|+..+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 72 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQ 72 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHcc
Confidence 46899999999999999999999988 775544433 2221 25689999999999999988664
No 317
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=96.07 E-value=0.0045 Score=57.21 Aligned_cols=60 Identities=12% Similarity=0.203 Sum_probs=47.0
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec---CCCceeeEeecCHHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl---sde~~a~LEFeSeEEAa~ak~~I 713 (1134)
+++.||||+|+..+++++|...|.++|....+.+ ++- ..++.++++|.+.++|..++..+
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 102 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 102 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHc
Confidence 5799999999999999999998888775444322 111 22578999999999999998765
No 318
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=96.03 E-value=0.0078 Score=53.14 Aligned_cols=58 Identities=12% Similarity=0.035 Sum_probs=46.9
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.++.||||+++..+++++|..-|.++ -... +.....+..++++|.+.++|..|+..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~--~~i~~~~g~afV~f~~~~~a~~Ai~~l~ 61 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKY--CYVDRNKRTAFVTLLNGEQAQNAIQMFH 61 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCC--EEEEGGGTEEEECCSCHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEE--EEEeCCCcEEEEEECCHHHHHHHHHHhC
Confidence 57899999999999999998888775 2222 2223678899999999999999988774
No 319
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.03 E-value=0.0055 Score=52.07 Aligned_cols=59 Identities=12% Similarity=0.123 Sum_probs=46.6
Q ss_pred ceEEEccCCChhhHHHHHHHHhhccccCCceeEec----CCCceeeEeecCHHHHHHHHHHHH
Q 001164 656 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 656 ~~LwVG~iss~~~keeilhELykfglk~p~~ftfl----sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
+.||||+++..+++++|...|.++|....+.+..- ..++.++++|.+.++|..++..+.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 46999999999999999999988876555443221 225689999999999999987654
No 320
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.99 E-value=0.011 Score=52.77 Aligned_cols=59 Identities=10% Similarity=0.036 Sum_probs=45.9
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~I 713 (1134)
..++.||||+++..+++++|..-|..+|....+ +.+-.....++++|.+.++|..|+. +
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~~afV~f~~~~~a~~ai~-l 64 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGVFAIVEMGDVGAREAVLS-Q 64 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCCEEEEEESSHHHHHHHHT-C
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCcEEEEEECCHHHHHHHHh-c
Confidence 467899999999999999999988887755543 2222222289999999999999877 5
No 321
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=95.98 E-value=0.0076 Score=54.16 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=48.2
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCcee---EecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV---TDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~f---tflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+|+..+++++|...|..+|......+ ..-..+..++++|.+.++|..|+. ++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~ 78 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LT 78 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cC
Confidence 46899999999999999999999998764333222 223457899999999999999986 53
No 322
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=95.96 E-value=0.0053 Score=53.31 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=42.9
Q ss_pred cceEEEccCCChh------hHHHHHHHHhhccccCCceeEec--CCCceeeEeecCHHHHHHHHHHH
Q 001164 655 CFHVYVGNIPNQW------AKDEILHESYKVVYKGPYMVTDL--SCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 655 s~~LwVG~iss~~------~keeilhELykfglk~p~~ftfl--sde~~a~LEFeSeEEAa~ak~~I 713 (1134)
++.||||+++..+ ++++|...|.++|....+.+... ..++.++++|.+.++|..|+..+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~l 67 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNA 67 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHh
Confidence 4789999999988 56777777777664433322111 23678999999999999997755
No 323
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=95.95 E-value=0.011 Score=53.60 Aligned_cols=62 Identities=18% Similarity=0.109 Sum_probs=48.7
Q ss_pred cccceEEEccCCC------hhhHHHHHHHHhhccccCCcee-Eec---CCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPN------QWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss------~~~keeilhELykfglk~p~~f-tfl---sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
+.++.||||++|. .+.+++|...|..+|....+.+ ++- ..++.++++|.+.++|..|+..+.
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln 75 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFH 75 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 4588999999999 8999999888888774444332 332 236789999999999999998774
No 324
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.94 E-value=0.0057 Score=55.42 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=46.9
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec----CCCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL----SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl----sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+++.||||+|+..+++++|...|..+| ...+.+ .+. ..+..++++|.+.++|..|+ .+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~ 77 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN 77 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGG
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcC
Confidence 34789999999999999999999888877 333222 221 22568999999999999998 653
No 325
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=95.94 E-value=0.0082 Score=58.30 Aligned_cols=62 Identities=19% Similarity=0.211 Sum_probs=49.0
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCcee-EecC---CCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLS---CEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfls---de~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.|||++|+..+++++|...|..++....+.+ ++-. ....++++|.+.++|..|+..+.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 102 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN 102 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 36899999999999999999999988875544433 2211 24689999999999999988764
No 326
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=95.92 E-value=0.0078 Score=56.91 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=48.3
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhcc-ccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfg-lk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
...+.|||||++..+++++|..-|..+| ....+.+..-..+..++++|.+.+||..|+..++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~ln 88 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLN 88 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcC
Confidence 3578999999999999999999888877 3333222112357899999999999999987763
No 327
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=95.89 E-value=0.0075 Score=52.62 Aligned_cols=60 Identities=18% Similarity=0.176 Sum_probs=47.0
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeEec----CCCceeeEeecCHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfl----sde~~a~LEFeSeEEAa~ak~~I 713 (1134)
...+.||||+++..+++++|...|..+|....+.+..- ..++.++++|.+.++|..|+ .+
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~ 67 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-AL 67 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GG
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hc
Confidence 35789999999999999999999998775444433211 22668999999999999987 55
No 328
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=95.86 E-value=0.0041 Score=61.09 Aligned_cols=98 Identities=15% Similarity=0.068 Sum_probs=43.9
Q ss_pred CceEEEEecCHHHHHHHHHhhccCcceEEEEeeccCCCCccccc--ccccccceEEEccCCChhhHHHHHHHHhhccccC
Q 001164 606 KGFALVEYINIIDAIRAREYIRNHFSWRVKFMDVGLGTKGVING--VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKG 683 (1134)
Q Consensus 606 rgfAFVeFr~i~DAi~A~~~L~G~~~~RI~f~r~~lGa~G~~~G--va~~~s~~LwVG~iss~~~keeilhELykfglk~ 683 (1134)
.+|||.+|+-..-+..|++.+.... ...+.|..+.-.+ ......+.||||+++..+++++|..-|..++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~------gg~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~Gi~- 73 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASMT------GGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPV- 73 (139)
T ss_dssp --------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCCCS-
T ss_pred CCcccccccCccccchhcccchhcc------CCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-
Confidence 3789999999998888888776542 1111111111111 112367899999999999999999999887732
Q ss_pred Ccee-Eec--CCCceeeEeecCHHHHHHHH
Q 001164 684 PYMV-TDL--SCEGALLMEFRTPEEATTAM 710 (1134)
Q Consensus 684 p~~f-tfl--sde~~a~LEFeSeEEAa~ak 710 (1134)
.+.+ ++- ..+..++++|++.+||..|+
T Consensus 74 ~v~i~~d~~g~srGfaFV~F~~~e~A~~Al 103 (139)
T 2hgn_A 74 RVHIEIGPDGRVTGEADVEFATHEEAVAAM 103 (139)
T ss_dssp EEECCCSSSSCSSCCCEEECSHHHHHHHHT
T ss_pred EEEEEECCCCCCceEEEEEeCCHHHHHHHH
Confidence 2222 221 23568999999999999987
No 329
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=95.83 E-value=0.0085 Score=53.66 Aligned_cols=57 Identities=11% Similarity=0.064 Sum_probs=43.0
Q ss_pred ccccccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHH
Q 001164 650 VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEAT 707 (1134)
Q Consensus 650 va~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa 707 (1134)
.+..+...||||+++..+++++|...|.++|....+.+.. ..++.++++|++.++|.
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~-~srGfaFV~F~~~~~A~ 62 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK-PFRAFAFVTFADDKVAQ 62 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS-SCCSEEEEEESCHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee-CCCCEEEEEECCHHHHH
Confidence 3456789999999999999999999999887554433311 25889999999999987
No 330
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.81 E-value=0.0073 Score=55.58 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=47.0
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhccccCCceeE-e---cCCCceeeEeecCHHHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk~p~~ft-f---lsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.++.||||+|+..+++++|..-|..+|....+.+. + -..++.++++|.+.++|..|+ .++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~ 87 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLT 87 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcC
Confidence 58899999999999999999988887644443321 1 123568999999999999998 774
No 331
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=95.80 E-value=0.0096 Score=55.04 Aligned_cols=60 Identities=13% Similarity=0.136 Sum_probs=45.7
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhccccCCcee-Ee---cCCCceeeEeecCHHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tf---lsde~~a~LEFeSeEEAa~ak~~I 713 (1134)
+.+.||||+++..+++++|..-|..+|....+.+ ++ -..++.++++|.+.++|..|+..+
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 87 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC
Confidence 6899999999999999999999988775544333 21 122568999999999999988654
No 332
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.79 E-value=0.0097 Score=53.46 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=44.8
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec---CCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl---sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+|+..+++++|...|..++ .+.+ .+. ..+..++++|.+.++|..|+..+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME 75 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC
Confidence 4789999999999999999887776542 2212 221 124689999999999999988774
No 333
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.77 E-value=0.01 Score=54.41 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=48.2
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCcee-EecC--CCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLS--CEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfls--de~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+.+.||||+++..+++++|..-|..+|....+.+ .+.. .+..++++|.+.++|..|+..+.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 87 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFN 87 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 36899999999999999999888887765444433 2221 24679999999999999988774
No 334
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=95.76 E-value=0.014 Score=55.96 Aligned_cols=63 Identities=11% Similarity=0.114 Sum_probs=51.1
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCc------ee---EecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY------MV---TDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~------~f---tflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+++.||||+++..+++++|...|..+|....+ .+ ..-...+.++++|.+.++|..|+..+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~ln 113 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEAN 113 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 3478999999999999999999999988755442 11 333557899999999999999988874
No 335
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=95.74 E-value=0.011 Score=52.44 Aligned_cols=60 Identities=12% Similarity=0.140 Sum_probs=44.6
Q ss_pred ceEEEccCCChhhHHHHHHHHhhcc--ccCCcee-Eec---CCCceeeEeecCHHHHHHHHHHHHH
Q 001164 656 FHVYVGNIPNQWAKDEILHESYKVV--YKGPYMV-TDL---SCEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 656 ~~LwVG~iss~~~keeilhELykfg--lk~p~~f-tfl---sde~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
..||||+++..+++++|...|..+| ....+.+ .+- ..++.++++|.+.++|..|+..+..
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g 67 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK 67 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGG
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCC
Confidence 3689999999999999999998888 4444433 221 2246799999999999999887743
No 336
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.74 E-value=0.012 Score=54.32 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=46.4
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhccccCCceeEec----CCCceeeEeecCHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTPEEATTAMAH 712 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfl----sde~~a~LEFeSeEEAa~ak~~ 712 (1134)
..+.||||+|+..+++++|...|..||....+.+..- ..+..++++|.+.++|..|+..
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 5799999999999999999999988775554433221 1256899999999999998653
No 337
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=95.73 E-value=0.011 Score=56.00 Aligned_cols=62 Identities=18% Similarity=0.137 Sum_probs=49.9
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCC--cee-Eec---CCCceeeEeecCHHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP--YMV-TDL---SCEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p--~~f-tfl---sde~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
.+++.||||+++..+++++|...|..+|.... +.+ ++- ..++..+++|.+. ||..++..+..
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g 88 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQA 88 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcC
Confidence 46899999999999999999999999886654 333 222 2468999999999 99999887744
No 338
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.70 E-value=0.018 Score=53.22 Aligned_cols=60 Identities=15% Similarity=0.098 Sum_probs=47.3
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCceeE-e--cCCCceeeEeecCHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMA 711 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ft-f--lsde~~a~LEFeSeEEAa~ak~ 711 (1134)
....+.||||+++..+++++|..-|..+|....+.+. + -..++.++++|.+.++|..|+.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999887755444332 1 2246789999999999999876
No 339
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.65 E-value=0.0091 Score=53.95 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=45.1
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec---CCCceeeEeecCHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl---sde~~a~LEFeSeEEAa~ak~~I 713 (1134)
..+++.||||+|+..+++++|..-|..++ ...+.+ ++- ..+..++++|.+.++|..|+ .+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l 75 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TY 75 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GG
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hh
Confidence 34789999999999999999998888864 222222 221 12458999999999999998 55
No 340
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=95.61 E-value=0.017 Score=53.61 Aligned_cols=60 Identities=17% Similarity=0.099 Sum_probs=49.4
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
.|.-|||||++.+++++++..=|..+|-... ++....+..++++|.+.+||..|.+.|+.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~--~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~ 65 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVS--FHPYLNQGIALCKYTTREEANKAQMALNN 65 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEE--EEEETTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEE--EEEcCCCcEEEEEECCHHHHHHHHHHhcC
Confidence 5889999999999999988887776654333 44455899999999999999999998853
No 341
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=95.55 E-value=0.018 Score=53.96 Aligned_cols=60 Identities=10% Similarity=0.159 Sum_probs=46.6
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhcccc---CCcee-EecC--CCceeeEeecCHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYK---GPYMV-TDLS--CEGALLMEFRTPEEATTAMA 711 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk---~p~~f-tfls--de~~a~LEFeSeEEAa~ak~ 711 (1134)
....+.||||+++..+++++|..-|..++.. ..+.+ ++.. .+..++++|.+.++|..|+.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~ 79 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK 79 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh
Confidence 4468899999999999999999999888763 23322 2222 25689999999999999877
No 342
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=95.48 E-value=0.016 Score=62.09 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=49.2
Q ss_pred cccceEEEccCCChh---------hHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQW---------AKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~---------~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
..++.||||+|+..+ ++++|...|..||-+.. ++.+.+++.++++|.+.++|..|+..|..
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~--v~v~~~kG~AFV~F~~~~~Ae~A~~am~g 201 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDR--IRYVESKNCGFVKFKYQANAEFAKEAMSN 201 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEE--EEEEGGGTEEEEEESSHHHHHHHHHHHTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEE--EEEECCCCEEEEEeCCHHHHHHHHHHhCC
Confidence 479999999999987 67777777777765444 34456789999999999999999888843
No 343
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=95.39 E-value=0.02 Score=48.51 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=42.3
Q ss_pred eEEEccCCChhhHHHHHHHHhhccccCCcee-Ee---cCCCceeeEeecCHHHHHHHHH
Q 001164 657 HVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMA 711 (1134)
Q Consensus 657 ~LwVG~iss~~~keeilhELykfglk~p~~f-tf---lsde~~a~LEFeSeEEAa~ak~ 711 (1134)
.||||+++..+++++|...|..+|....+.+ .+ -..++.++++|.+.++|..++.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 4899999999999999999988775544433 11 1235689999999999988754
No 344
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=95.36 E-value=0.0074 Score=54.64 Aligned_cols=59 Identities=15% Similarity=0.229 Sum_probs=44.4
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec----CCCceeeEeecCHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL----SCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl----sde~~a~LEFeSeEEAa~ak~~I 713 (1134)
...+.||||+++..+++++|..-|.++| ...+.+ ++. ..++.++++|.+.++|..|+ .+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l 80 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SL 80 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hc
Confidence 4689999999999999999999888877 443332 221 12568999999999999998 55
No 345
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.33 E-value=0.018 Score=53.36 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=46.9
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhcccc-CCcee-Eec--CCCceeeEeecCHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYK-GPYMV-TDL--SCEGALLMEFRTPEEATTAMA 711 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk-~p~~f-tfl--sde~~a~LEFeSeEEAa~ak~ 711 (1134)
.+.+.||||+++..+++++|..-|..++.. ..+.+ ++. ..+..++++|.+.++|..|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~ 75 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER 75 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGG
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHH
Confidence 468999999999999999999988888766 44433 222 246789999999999999864
No 346
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.31 E-value=0.044 Score=51.00 Aligned_cols=60 Identities=15% Similarity=0.249 Sum_probs=53.8
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEeccC--------ceEEEEecCHHHHHHHHHhhccCc
Q 001164 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK--------GFALVEYINIIDAIRAREYIRNHF 630 (1134)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~r--------gfAFVeFr~i~DAi~A~~~L~G~~ 630 (1134)
.+|-|-+|+|+.||+++.++++.++.++-+.+.+.+ +-|||.|.+.+|+++=++.++|+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~ 69 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYV 69 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE
Confidence 478899999999999999999999998887775433 789999999999999999999993
No 347
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=95.30 E-value=0.019 Score=58.49 Aligned_cols=60 Identities=15% Similarity=0.060 Sum_probs=47.8
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~I 713 (1134)
....||||+++..+++++|...|.+||....+.+..-..+..++++|++.++|..|+..|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~L 104 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSL 104 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHh
Confidence 356689999999999999999988887665554422234568999999999999998876
No 348
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=95.28 E-value=0.014 Score=65.46 Aligned_cols=62 Identities=18% Similarity=0.134 Sum_probs=51.5
Q ss_pred ccccceEEEcc--CCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGN--IPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 652 ~~~s~~LwVG~--iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
..++++||||| ++..+++|+|...|.+||.... +....++..++++|.+.+||..|+..|+-
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~--v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG 78 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDA--LLMPPNKPYSFARYRTTEESKRAYVTLNG 78 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEE--EECCTTCSEEEEEESSHHHHHHHHHHTTT
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEE--EEEeCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 45899999998 5778999999999998875543 44445789999999999999999988853
No 349
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=95.28 E-value=0.018 Score=57.16 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=46.5
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhcc--ccCCcee-Eec---CCCceeeEeecCHHHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVV--YKGPYMV-TDL---SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfg--lk~p~~f-tfl---sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+.||||+++..+++++|...|..+| ....+.+ .+- ..++.++++|.+.++|..|+..+.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ln 120 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLP 120 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHST
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 578999999999999999999998887 3333332 221 125689999999999999988764
No 350
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=95.14 E-value=0.025 Score=57.11 Aligned_cols=63 Identities=16% Similarity=0.074 Sum_probs=49.5
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCceeEe-c--CCCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD-L--SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftf-l--sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+++.|||++|+..+++++|..-|..||....+.+.. . .....++++|.+.++|..|+..+.
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~ln 150 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYK 150 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHST
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhC
Confidence 45689999999999999999999998887555443321 1 235789999999999999987663
No 351
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.09 E-value=0.036 Score=48.79 Aligned_cols=59 Identities=14% Similarity=0.239 Sum_probs=44.8
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCcee-EecC--CCceeeEeecCHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLS--CEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfls--de~~a~LEFeSeEEAa~ak~~I 713 (1134)
...+.||||+++..+++++|..-|..+ ....+.+ ++.. .+..++++|.+.++|..|+. +
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~ 69 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-C 69 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-S
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-h
Confidence 468999999999999999999888876 2222222 3211 15589999999999999987 5
No 352
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=95.07 E-value=0.019 Score=53.45 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=46.5
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec---CCCceeeEeecCHHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl---sde~~a~LEFeSeEEAa~ak~~I 713 (1134)
.++.||||+|+..+++++|..-|.++|....+.+ .+- ...+.++++|.+.++|..++ .+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l 97 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AM 97 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hc
Confidence 5899999999999999999999988775444433 221 22568999999999999987 44
No 353
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=95.06 E-value=0.021 Score=48.32 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=43.1
Q ss_pred eEEEccCCChhhHHHHHHHHhhccccCCcee-Ee---cCCCceeeEeecCHHHHHHHHH
Q 001164 657 HVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMA 711 (1134)
Q Consensus 657 ~LwVG~iss~~~keeilhELykfglk~p~~f-tf---lsde~~a~LEFeSeEEAa~ak~ 711 (1134)
.||||+++..+++++|..-|.++|....+.+ ++ -..+..++++|.+.++|..|+.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~ 59 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 59 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH
Confidence 4899999999999999999988775544333 11 1236789999999999999865
No 354
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.06 E-value=0.024 Score=50.77 Aligned_cols=58 Identities=12% Similarity=-0.024 Sum_probs=45.5
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||++ .+++++|..-|..+|....+ .....+..++++|.+.++|..|+..+.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v--~i~~~~g~afV~f~~~~~a~~Ai~~l~ 70 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDL--SMDPPRNCAFVTYEKMESADQAVAELN 70 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEE--EEETTTTEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEE--EecCCCCEEEEEECCHHHHHHHHHHhC
Confidence 36889999996 78888888888777644332 334678899999999999999987764
No 355
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=95.02 E-value=0.018 Score=52.65 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=45.2
Q ss_pred cccceEEEccCCChh------hHHHHHHHHhhccccCCceeEec--CCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQW------AKDEILHESYKVVYKGPYMVTDL--SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~------~keeilhELykfglk~p~~ftfl--sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
+.++.||||+++..+ ++++|...|.++|....+.+... ..++.++++|.+.++|..|+..+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~ 82 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNAD 82 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCS
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 357899999999988 56777777776664433322211 236789999999999999987663
No 356
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=94.89 E-value=0.033 Score=54.59 Aligned_cols=66 Identities=15% Similarity=0.037 Sum_probs=44.9
Q ss_pred ccccccccceEE--EccCCChhhHHHHHHHHhhccccCCceeEecCCCc-eeeEeecCHHHHHHHHHHHH
Q 001164 648 NGVAVGSCFHVY--VGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEG-ALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 648 ~Gva~~~s~~Lw--VG~iss~~~keeilhELykfglk~p~~ftflsde~-~a~LEFeSeEEAa~ak~~IR 714 (1134)
+|+...+++.|+ |||++-.+++|+|.+-|.+||....+.+.. ..+. +++++|.+.+||..|+..|.
T Consensus 19 ~~~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~-~~~gfqAFVef~~~~~A~~Ai~~Ln 87 (130)
T 3zzy_A 19 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLD 87 (130)
T ss_dssp ------CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE-ETTEEEEEEEESCHHHHHHHHHHHT
T ss_pred ccccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc-CCCCcEEEEEECCHHHHHHHHHHcC
Confidence 344455666555 999999999998888777777555443322 2233 49999999999999999883
No 357
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.87 E-value=0.029 Score=52.62 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=47.1
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCc-eeEecC---CCceeeEeecCHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MVTDLS---CEGALLMEFRTPEEATTAMA 711 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~-~ftfls---de~~a~LEFeSeEEAa~ak~ 711 (1134)
...+.||||+++..+++++|..-|..+|....+ .+.+-. .+..++++|.+.++|..|+.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~ 85 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC 85 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH
Confidence 357899999999999999999988888766553 333322 25689999999999999876
No 358
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=94.85 E-value=0.044 Score=50.21 Aligned_cols=60 Identities=13% Similarity=0.238 Sum_probs=46.4
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccC---Ccee-Eec--CCCceeeEeecCHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKG---PYMV-TDL--SCEGALLMEFRTPEEATTAMA 711 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~---p~~f-tfl--sde~~a~LEFeSeEEAa~ak~ 711 (1134)
....+.||||+++..+++++|..-|..+|..+ .+.+ ++. ..+..++++|.+.++|..|+.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~ 73 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 73 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 45788999999999999999999888877633 2222 221 235689999999999999876
No 359
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=94.84 E-value=0.012 Score=51.58 Aligned_cols=57 Identities=18% Similarity=0.171 Sum_probs=43.6
Q ss_pred ceEEEccCCChhhHHHHHHHHhhccccCCceeE-e---cCCCceeeEeecCHHHHHHHHHHH
Q 001164 656 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 656 ~~LwVG~iss~~~keeilhELykfglk~p~~ft-f---lsde~~a~LEFeSeEEAa~ak~~I 713 (1134)
+.||||+++..+++++|..-|..+|....+.+. + -..++.++++|.+.+ |..+...+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l 62 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKL 62 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHh
Confidence 579999999999999998888887755544331 1 123668999999998 88887655
No 360
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=94.70 E-value=0.016 Score=52.08 Aligned_cols=59 Identities=17% Similarity=0.100 Sum_probs=46.1
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCcee-EecC--CCceeeEeecCHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLS--CEGALLMEFRTPEEATTAMA 711 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfls--de~~a~LEFeSeEEAa~ak~ 711 (1134)
..++.||||+++..+++++|..-|..+|....+.+ ++-. .++.++++|.+.++|..|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 36899999999999999999998888775544433 2221 25789999999999998876
No 361
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=93.71 E-value=0.0055 Score=56.68 Aligned_cols=62 Identities=13% Similarity=0.166 Sum_probs=48.5
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCC--------cee-Ee---cCCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP--------YMV-TD---LSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p--------~~f-tf---lsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||+++..+++++|..-|..+|.... +.+ ++ -..+..++++|.+.++|..|+..+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 78 (116)
Confidence 36889999999999999999988888875544 322 22 1235689999999999999988764
No 362
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.62 E-value=0.047 Score=49.79 Aligned_cols=60 Identities=18% Similarity=0.216 Sum_probs=46.2
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCC-cee-Eec--CCCceeeEeecCHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP-YMV-TDL--SCEGALLMEFRTPEEATTAMAH 712 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p-~~f-tfl--sde~~a~LEFeSeEEAa~ak~~ 712 (1134)
...+.||||+++..+++++|..-|..++.... +.+ .+. ..+..++++|.+.++|..|+..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~ 76 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK 76 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh
Confidence 46899999999999999999988888765433 222 221 2357899999999999998753
No 363
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.57 E-value=0.034 Score=51.06 Aligned_cols=59 Identities=20% Similarity=0.189 Sum_probs=44.7
Q ss_pred ccccceEEEccCCChhhHHHHHHHHhhccccCCcee-EecC--CCceeeEeecCHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLS--CEGALLMEFRTPEEATTAMA 711 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfls--de~~a~LEFeSeEEAa~ak~ 711 (1134)
....+.|||++++..+++++|..-|..++.. .+.+ ++-. .+..++++|.+.++|..|+.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~ 73 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA 73 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 3478899999999999999998888777733 2222 2222 14579999999999999873
No 364
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=94.51 E-value=0.058 Score=51.11 Aligned_cols=58 Identities=12% Similarity=-0.014 Sum_probs=47.1
Q ss_pred cccceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.||||++ .+++++|...|..||....+.+ ...++.++++|.+.++|..|+..+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i--~~~kg~aFV~f~~~~~A~~Ai~~ln 94 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM--DPPRNCAFVTYEKMESADQAVAELN 94 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE--ETTTTEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE--eCCCCEEEEEECCHHHHHHHHHHhC
Confidence 36899999996 5888888888888876555433 4678899999999999999988774
No 365
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=94.50 E-value=0.11 Score=50.44 Aligned_cols=61 Identities=8% Similarity=-0.011 Sum_probs=56.9
Q ss_pred CceEEeccCCCccCHHHHHHHhhcc-----CCcceEEEeccCceEEEEecCHHHHHHHHHhhccCc
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRF-----GPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHF 630 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~y-----GpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~ 630 (1134)
.+.|=+=+|+.-++++.|+.+.+.| |+|..+...++-+=|+|||+|..+|-.|.=+|+|..
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~e 86 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQ 86 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCee
Confidence 4567778999999999999999999 999999999999999999999999999988999974
No 366
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=94.44 E-value=0.021 Score=57.70 Aligned_cols=47 Identities=21% Similarity=0.201 Sum_probs=36.8
Q ss_pred HHHHhh-ccc--cCCceeEecCCCceeeEeecCHHHHHHHHHHHHHHhhc
Q 001164 673 LHESYK-VVY--KGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1134)
Q Consensus 673 lhELyk-fgl--k~p~~ftflsde~~a~LEFeSeEEAa~ak~~IRQ~rRe 719 (1134)
.+|+|. |.| ..+++++|..++|.++|+|++++||..|+..|.+....
T Consensus 93 eqELY~~f~Y~~~r~~FHtFe~d~c~~GLnFade~EA~~F~~~V~~~l~~ 142 (152)
T 1mke_A 93 EQELYNNFVYNSPRGYFHTFAGDTCQVALNFANEEEAKKFRKAVTDLLGR 142 (152)
T ss_dssp EEECCSSCCCBCSSSSEEEEECSSSEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred EeecccceeeccCCCeEEEEecCCcEEEEeeCCHHHHHHHHHHHHHHHHH
Confidence 355665 333 45568899999999999999999999999999654443
No 367
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.21 E-value=0.072 Score=50.21 Aligned_cols=58 Identities=17% Similarity=0.310 Sum_probs=46.4
Q ss_pred ccce-EEEccCCChhhHHHHHHHHhh-ccccC-CceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 654 SCFH-VYVGNIPNQWAKDEILHESYK-VVYKG-PYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 654 ~s~~-LwVG~iss~~~keeilhELyk-fglk~-p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
+|.. |||+|++-.+++++|-..|+. |...+ . +.++.. +++++.|.+.|+|.+|+..|.
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~--Vl~Vtg-G~AfV~F~~~esA~~A~~~l~ 67 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGK--VLSITG-CSAILRFINQDSAERAQKRME 67 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCC--EEECCT-TCEEEEESSHHHHHHHHHHHT
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCe--eEEEec-CEEEEEECCHHHHHHHHHHhc
Confidence 6777 999999999999998888887 33442 3 444433 999999999999999988773
No 368
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.02 E-value=0.075 Score=51.43 Aligned_cols=58 Identities=17% Similarity=0.113 Sum_probs=44.8
Q ss_pred cceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCc-eeeEeecCHHHHHHHHHHHH
Q 001164 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEG-ALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 655 s~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~-~a~LEFeSeEEAa~ak~~IR 714 (1134)
.-.||||+++-.+++++|...|..||....+.+.. . .+ +++++|++.++|..|+..|.
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-~Gf~aFVef~~~~~A~~A~~~Ln 83 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-NGIQAMVEFESVLCAQKAKAALN 83 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-SSEEEEEEESSHHHHHHHHHHHT
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-CCCEEEEEECCHHHHHHHHHHhC
Confidence 34467999999999998888888777555443322 2 36 59999999999999998884
No 369
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=93.92 E-value=0.028 Score=58.89 Aligned_cols=60 Identities=12% Similarity=0.125 Sum_probs=45.5
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhcc--ccCCcee-Eec---CCCceeeEeecCHHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVV--YKGPYMV-TDL---SCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfg--lk~p~~f-tfl---sde~~a~LEFeSeEEAa~ak~~I 713 (1134)
..+.||||+|+..+++++|...|..|+ ....+.+ ++- ..++.++|+|.+.++|.+|+..|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~l 132 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLL 132 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc
Confidence 567899999999999999999998888 4444333 221 12568999999999999987655
No 370
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=93.91 E-value=0.043 Score=53.11 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=44.2
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhccccC-Ccee-Eec--CCCceeeEeecCHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKG-PYMV-TDL--SCEGALLMEFRTPEEATTAMAH 712 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk~-p~~f-tfl--sde~~a~LEFeSeEEAa~ak~~ 712 (1134)
..+.||||+++..+++++|..-|..++... .+.+ ++- ..+..++++|.+.+||.+|+..
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK 103 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH
Confidence 578899999999999999998888763321 1111 111 2367899999999999998763
No 371
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}
Probab=93.84 E-value=0.038 Score=56.71 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=36.9
Q ss_pred HHHhh-cc--ccCCceeEecCCCceeeEeecCHHHHHHHHHHHHHHhhcc
Q 001164 674 HESYK-VV--YKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKSR 720 (1134)
Q Consensus 674 hELyk-fg--lk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IRQ~rRer 720 (1134)
+|+|. |. ...+++++|..++|.++|+|++++||..+...|.+....|
T Consensus 111 qELY~~f~Y~~~r~~FHtFe~d~c~~GLnFade~EA~~F~~~V~~~l~~~ 160 (169)
T 2ifs_A 111 QELYNNFVYNSPRGYFHTFAGDTCQVALNFANEEEAKKFRKAVTDLLGRR 160 (169)
T ss_dssp EECCSSCCCBCCCSSEEEEECSSSEEEEECSCHHHHHHHHHHHHHHHHHC
T ss_pred eecccceeeccCCCeEEEeecCCcEEEEeeCCHHHHHHHHHHHHHHHHHH
Confidence 55555 33 3455688999999999999999999999999996554443
No 372
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.33 E-value=0.031 Score=65.03 Aligned_cols=54 Identities=20% Similarity=0.343 Sum_probs=42.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccC-ceEEEEecCHHHHHHH
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK-GFALVEYINIIDAIRA 622 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~r-gfAFVeFr~i~DAi~A 622 (1134)
.+.|.++|. .++..++.+|..-|.+||+|.++.+|..+ -||.|||.+.+.|-.+
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~ 105 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSL 105 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHH
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHH
Confidence 467999996 79999999999999999999999999955 5999999997666544
No 373
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.06 E-value=0.15 Score=48.99 Aligned_cols=58 Identities=16% Similarity=0.066 Sum_probs=45.2
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhcccc----CCcee-EecC--CCceeeEeecCHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYK----GPYMV-TDLS--CEGALLMEFRTPEEATTAMA 711 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk----~p~~f-tfls--de~~a~LEFeSeEEAa~ak~ 711 (1134)
..+.||||+++-.+++++|..-|..++.. ..+.+ ++.. .+..++++|.+.+||..|+.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~ 86 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALR 86 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 46899999999999999999999887643 23322 3322 25689999999999999875
No 374
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.20 E-value=0.22 Score=46.00 Aligned_cols=62 Identities=21% Similarity=0.234 Sum_probs=44.9
Q ss_pred cccceEEEccCCChhh-----------HHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQWA-----------KDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~~~-----------keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+++.|+|.++-.... +|+|..+|.++|....+.+.+-..+..++++|.+.++|..|+..+.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcC
Confidence 4799999999954332 4566666666665555444333457899999999999999988774
No 375
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=92.10 E-value=0.14 Score=52.22 Aligned_cols=60 Identities=17% Similarity=0.151 Sum_probs=46.5
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhccccCCcee-Eec--CCCceeeEeecCHHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL--SCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk~p~~f-tfl--sde~~a~LEFeSeEEAa~ak~~I 713 (1134)
..+.||||+++..++.++|..-|..+|....+.+ ++. ..++.++++|++.++|..|+..+
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~ 170 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP 170 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC
Confidence 4789999999999999999988888775444433 222 23678999999999999987643
No 376
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=91.57 E-value=0.36 Score=44.90 Aligned_cols=63 Identities=19% Similarity=0.096 Sum_probs=47.3
Q ss_pred ccccceEEEccCCCh-----hhHHHHHHHHhhccccCCcee-Eec----CCCceeeEeecCHHHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQ-----WAKDEILHESYKVVYKGPYMV-TDL----SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~-----~~keeilhELykfglk~p~~f-tfl----sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..+++.|+|.|+-.. -.+++|..|+.++|....+.+ ++. ..++.++++|.+.++|..|...|.
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~ln 77 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLN 77 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHC
Confidence 358999999999742 256788888887776555544 321 347899999999999999998884
No 377
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.49 E-value=0.19 Score=47.17 Aligned_cols=54 Identities=19% Similarity=0.178 Sum_probs=42.8
Q ss_pred ccceEEEccCCChhhHHHHHHHHhhccccCCceeEec-----CCCceeeEeecCHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL-----SCEGALLMEFRTPEEATTAM 710 (1134)
Q Consensus 654 ~s~~LwVG~iss~~~keeilhELykfglk~p~~ftfl-----sde~~a~LEFeSeEEAa~ak 710 (1134)
..+.||||+++-.+++++|..-|..+ . ...++.. ..+..++++|.+.+||..|+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~--v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al 73 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-R--VDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL 73 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-C--CCEEEECCCTTCCCCSEEEEECSSHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-C--eeEEEEEECCCCCCCeEEEEEECCHHHHHHHH
Confidence 47899999999999999999888875 2 2223222 23678999999999999997
No 378
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=90.64 E-value=0.58 Score=54.96 Aligned_cols=142 Identities=19% Similarity=0.280 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHhccCCchHHHHHHhhccccccccCchhHhhhhhheeeecccccee
Q 001164 54 EIRSVYECYRRLKACIAQKDARRLPELEQAYLSLITASRGCTSVQRIVADLVPRYALYCPTALEAATEVVIYMHNSSVAL 133 (1134)
Q Consensus 54 e~~~~~~~y~~~~~~~~~~~~~~~~~le~~y~~li~~s~gc~svqri~a~~iprya~~cptal~aa~~v~i~m~~~~~~~ 133 (1134)
-|..+|++|.||-..= | -..+=|.+|..+|.++.|=..++|+.|.+||||..+=|.--|.|.-..+|.-
T Consensus 6 ~ie~LY~~~~~L~da~---d--k~~~~~~~y~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLc------ 74 (507)
T 3u0r_A 6 TVEELYRNYGILADAT---E--QVGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLC------ 74 (507)
T ss_dssp CHHHHHHHHHHHHHTG---G--GGGGGHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHH------
T ss_pred hHHHHHHHhhHhhhcc---c--cccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH------
Confidence 3789999999996541 1 2244578899999999999999999999999999999999999987777643
Q ss_pred eccCCCCcchhhhhhhhhhccccccccccccCCCCccccccchhhhhhhhhhhhhhccCCCceEeechhhhhccCCchHH
Q 001164 134 INRGEDADGVAFQTASACIFGLGDICRTASSEVPTSSVIRGICSAVFHNVLDFFISSFDGKDIIHTVDKEITKMLDSDEV 213 (1134)
Q Consensus 134 ~~rg~d~~gva~~ta~aci~gl~dic~~a~~~~~~s~~~~~ics~v~~~vl~ff~~~~~g~di~~~~~~~~~~~~d~~e~ 213 (1134)
-+||.+ .-+.-|-||.+||-. +. ...+
T Consensus 75 --EDed~~-----IR~qaik~Lp~~ck~---~~-------------------------------------------i~ki 101 (507)
T 3u0r_A 75 --EDEDVS-----IRRQAIKELPQFATG---EN-------------------------------------------LPRV 101 (507)
T ss_dssp --TCSSHH-----HHHHHHHHGGGGCCT---TC-------------------------------------------HHHH
T ss_pred --hcccHH-----HHHHHHHhhHHHhhh---hh-------------------------------------------hhhH
Confidence 234433 345568889999954 11 1234
Q ss_pred HHhhhcccCCCchhhhhhhHHHHHhHHHHHHhcCchHHHHHHHHhhCccc
Q 001164 214 FLGLKKKFSDEDESSLIKLSKFRLLSLLQIFFSSPKNLLAACFELFNPSV 263 (1134)
Q Consensus 214 ~~~lk~~~~~~~~~~~~~l~~~~~l~~l~~f~~~p~~~l~acf~l~~~~~ 263 (1134)
-++|-|-+.-|+..-+.-. --||+.+|-..||+.|.+=|..+.+.+
T Consensus 102 aDvL~QlLqtdd~~E~~~V----~~sL~sllk~Dpk~tl~~lf~~i~~~~ 147 (507)
T 3u0r_A 102 ADILTQLLQTDDSAEFNLV----NNALLSIFKMDAKGTLGGLFSQILQGE 147 (507)
T ss_dssp HHHHHHHTTCCCHHHHHHH----HHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhccchHHHHHH----HHHHHHHHhcChHHHHHHHHHHHcccc
Confidence 4555555554444333322 247888888999999999998888764
No 379
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=90.00 E-value=0.31 Score=46.06 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=50.3
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec--------cCceEEEEecCHHHHHHHHHhhccCc
Q 001164 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--------IKGFALVEYINIIDAIRAREYIRNHF 630 (1134)
Q Consensus 570 s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~--------~rgfAFVeFr~i~DAi~A~~~L~G~~ 630 (1134)
|-+|-|-.|+|+.||+++.++++..=.++-+.+.+ .-+-|||.|.+.+|.+.=++..+|..
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~ 77 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYI 77 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcE
Confidence 56899999999999999999888775555444433 22679999999999999999999983
No 380
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=89.15 E-value=1.2 Score=42.40 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=50.4
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCcceEEE
Q 001164 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSWRVK 635 (1134)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~~~RI~ 635 (1134)
.-|+| ..++.--..||+.+|+.||-+.==|+ +-.-|||-|.+.+.|..|+..|.-+..++|+
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi--dDTsAlvvf~~~~~a~~al~~i~k~~~y~i~ 78 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI--DDTSAFVSLSQPEQVQIAVNTSKYAESYRIQ 78 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE--ETTEEEEECSCHHHHHHHHHHHHHCCSSEEE
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEEEEEE--cCCeEEEEecCHHHHHHHHHhcccCCceEEE
Confidence 34556 99999999999999999996665555 4589999999999999999988645445544
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.90 E-value=1.7 Score=41.66 Aligned_cols=63 Identities=11% Similarity=0.110 Sum_probs=52.2
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhc-c----CCcceEEEeccCceEEEEecCHHHHHHHHH----hhccCcce
Q 001164 568 SASKQLWLGSFGPEASEAHIRFQIDR-F----GPLEHFFFFPIKGFALVEYINIIDAIRARE----YIRNHFSW 632 (1134)
Q Consensus 568 ~~s~~LWVGnL~~~vte~dL~~~F~~-y----GpLe~v~~~~~rgfAFVeFr~i~DAi~A~~----~L~G~~~~ 632 (1134)
+..+.+-|-||++++.++.|+--|+. - |++++|...+ +-|+|.|.+..+|..-.+ .|+|..+.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 35688999999999999999999998 2 8999999887 999999999999955443 36665443
No 382
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=86.63 E-value=1.4 Score=43.06 Aligned_cols=74 Identities=12% Similarity=0.180 Sum_probs=50.2
Q ss_pred eeecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhccCc
Q 001164 555 WYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHF 630 (1134)
Q Consensus 555 ~~~~g~~~a~dv~~~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~~rgfAFVeFr~i~DAi~A~~~L~G~~ 630 (1134)
.|-.|++...|---..+-|-|=..++.. -+.|...|++||.|.........++-.|.|.+..+|.+|+.. +|+.
T Consensus 9 f~~~~~~l~~~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~i 82 (119)
T 1wwh_A 9 FYTQGDSLTSEDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRI 82 (119)
T ss_dssp ------------CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCE
T ss_pred ceeCCcccCCCCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeE
Confidence 3456777666655455555565666664 678899999999999998866889999999999999999876 7763
No 383
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=85.75 E-value=0.64 Score=44.26 Aligned_cols=55 Identities=15% Similarity=0.006 Sum_probs=45.9
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhccCc
Q 001164 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHF 630 (1134)
Q Consensus 572 ~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-~rgfAFVeFr~i~DAi~A~~~L~G~~ 630 (1134)
-|+| +.++.--..||+.+|+.|| .|.|.= +-.-|||-|.+.+.|..|+..|.-..
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg---gv~I~WidDTsAlvvf~~~~~a~~al~~i~~~~ 63 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG---NIQISWIDDTSAFVSLSQPEQVKIAVNTSKYAE 63 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE---EEEEEEEETTEEEEEEEEECHHHHHHHHHTTCS
T ss_pred EEEE-eCChhhhhHHHHHHHhccC---CEEEEEEcCCeEEEEecCHHHHHHHHHhcccCC
Confidence 4566 9999999999999999999 555432 66999999999999999999886443
No 384
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=85.19 E-value=0.87 Score=44.44 Aligned_cols=48 Identities=17% Similarity=0.025 Sum_probs=37.2
Q ss_pred HHHhh-cc--ccCCceeEecCCCceeeEeecCHHHHHHHHHHHHHHhhccc
Q 001164 674 HESYK-VV--YKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKSRS 721 (1134)
Q Consensus 674 hELyk-fg--lk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IRQ~rRerS 721 (1134)
+|+|. +. .-.+++++|..++|..+|+|.+++||..|+..+.+....+.
T Consensus 63 ~~i~~~~~y~~~~~~Fh~w~~~~~~~GL~F~se~eA~~F~~~~~~al~~~~ 113 (130)
T 1qc6_A 63 YSIVKGLKYNQATPTFHQWRDARQVYGLNFASKEEATTFSNAMLFALNIMN 113 (130)
T ss_dssp EECCTTCEEEEEETTEEEEECSSCEEEEEESCHHHHHHHHHHHHHHHHHTC
T ss_pred eEEeCCcEEeccCCeeEEEEcCCEEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 45555 33 45566889999999999999999999999999966554433
No 385
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=84.67 E-value=1.6 Score=41.45 Aligned_cols=65 Identities=17% Similarity=0.100 Sum_probs=42.1
Q ss_pred ccccccceEEEccCCChhh------HH----HHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHH
Q 001164 650 VAVGSCFHVYVGNIPNQWA------KD----EILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 650 va~~~s~~LwVG~iss~~~------ke----eilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
+...+|+.|.+-|+=..-+ .+ +|..|+.+||....+.+-.-..++.++++|.+.++|..|...|+
T Consensus 2 ~~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~ln 76 (114)
T 3s6e_A 2 VQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALH 76 (114)
T ss_dssp CCCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhC
Confidence 3445778888877755432 33 45555555554443332112246899999999999999999884
No 386
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.14 E-value=1.6 Score=42.34 Aligned_cols=59 Identities=5% Similarity=-0.114 Sum_probs=46.4
Q ss_pred ccccceEEEccCCCh-hhHHHHHHHHhhccccCCcee-EecCCCceeeEeecC-HHHHHHHHHHH
Q 001164 652 VGSCFHVYVGNIPNQ-WAKDEILHESYKVVYKGPYMV-TDLSCEGALLMEFRT-PEEATTAMAHL 713 (1134)
Q Consensus 652 ~~~s~~LwVG~iss~-~~keeilhELykfglk~p~~f-tflsde~~a~LEFeS-eEEAa~ak~~I 713 (1134)
....+.||||+++.. +++|+|...|..+| ++.+ .+..++...++.|.+ .++|..+...+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G---~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHG---EIKWIDFVRGAKEGIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSC---CEEEEECCTTCSEEEEEESSCHHHHHHHHHHT
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcC---CEEEEEEecCCCEEEEEECCChHHHHHHHHHh
Confidence 446789999999999 88888777777544 5545 566778889999999 78888877754
No 387
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=82.96 E-value=1.9 Score=39.87 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=42.1
Q ss_pred cccceEEEccCCCh--h--------hHHHHHHHHhhccccCCcee-Eec-----CCCceeeEeecCHHHHHHHHHHHH
Q 001164 653 GSCFHVYVGNIPNQ--W--------AKDEILHESYKVVYKGPYMV-TDL-----SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 653 ~~s~~LwVG~iss~--~--------~keeilhELykfglk~p~~f-tfl-----sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.+|+.|.+-|+-.. . .+++|..|+.++|....+.+ +.. .....++++|.+.++|.+|...|+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ln 80 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT 80 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhC
Confidence 47999999987442 2 23456666666554433322 222 246889999999999999999884
No 388
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=82.78 E-value=1.9 Score=41.14 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=43.6
Q ss_pred ccceEEEccCCCh--h---hHHHHHHHHhhccccCCcee-EecC-------CCceeeEeecCHHHHHHHHHHHH
Q 001164 654 SCFHVYVGNIPNQ--W---AKDEILHESYKVVYKGPYMV-TDLS-------CEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 654 ~s~~LwVG~iss~--~---~keeilhELykfglk~p~~f-tfls-------de~~a~LEFeSeEEAa~ak~~IR 714 (1134)
+|+.|++.|+-.. + .+|+|..|+.++|....+.+ +... ....++++|.+.++|.+|...|.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~Ln 92 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN 92 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHC
Confidence 7999999998543 2 35677777777765554433 3322 13679999999999999998884
No 389
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=82.53 E-value=0.25 Score=65.38 Aligned_cols=10 Identities=20% Similarity=0.371 Sum_probs=5.8
Q ss_pred HHHHHHHHhh
Q 001164 669 KDEILHESYK 678 (1134)
Q Consensus 669 keeilhELyk 678 (1134)
+.-|++|+++
T Consensus 1351 R~~Ii~Ei~~ 1360 (1752)
T 3h0g_A 1351 RSALLKELRN 1360 (1752)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 4455666665
No 390
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=80.71 E-value=1.8 Score=41.44 Aligned_cols=37 Identities=8% Similarity=-0.003 Sum_probs=31.8
Q ss_pred cccCCceeEecCCCceeeEeecCHHHHHHHHHHHHHH
Q 001164 680 VYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQH 716 (1134)
Q Consensus 680 glk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IRQ~ 716 (1134)
..-.|.++++..++|..+|+|.+++||..|...+++.
T Consensus 71 ~~~~p~Fh~w~~~~~~~GLnF~se~eA~~F~~~v~~a 107 (112)
T 1evh_A 71 NQATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHA 107 (112)
T ss_dssp BCCSSSEEEEECSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred EecCccceeEecCCEEEEEecCCHHHHHHHHHHHHHH
Confidence 3556778899999999999999999999998888653
No 391
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=79.06 E-value=2.1 Score=41.20 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=31.4
Q ss_pred cccCCceeEecCCCceeeEeecCHHHHHHHHHHHHH
Q 001164 680 VYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 680 glk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
..-.|.++++..+++..+|+|.+++||..|...+++
T Consensus 73 ~~~~p~FH~w~~~~~~~GLnF~se~eA~~F~~~v~~ 108 (115)
T 1egx_A 73 NQATPNFHQWRDARQVWGLNFGSKEDAAQFAAGMAS 108 (115)
T ss_dssp CCSSTTEEEEESSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred EecCccceEEecCCEEEEEecCCHHHHHHHHHHHHH
Confidence 355677889999999999999999999999888864
No 392
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=78.59 E-value=3.2 Score=48.74 Aligned_cols=62 Identities=16% Similarity=0.059 Sum_probs=50.8
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhccCcceEE
Q 001164 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSWRV 634 (1134)
Q Consensus 569 ~s~~LWVGnL~~~vte~dL~~~F~~yGpLe~v~~~~-~rgfAFVeFr~i~DAi~A~~~L~G~~~~RI 634 (1134)
-..-|+|| ++......||++.|+.||. |.+.. +...|||.|.+-++|..+++++.-+..++|
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~---v~V~widdt~a~V~~~~~~~a~~~l~~~~~~~~~~i 501 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN---IQISWIDDTSAFVSLSQPEQVQIAVNTSKYAESYRI 501 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC---CEEEECSSSEEEEECSCHHHHHHHHHHHTTCSSCEE
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC---EEEEEEcCCeEEEEECCHHHHHHHHHHHHhCCceEE
Confidence 35667787 8888899999999999994 45555 778999999999999999999976654444
No 393
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=74.80 E-value=3.1 Score=40.79 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=31.6
Q ss_pred cccCCceeEecCCCceeeEeecCHHHHHHHHHHHHH
Q 001164 680 VYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 680 glk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
..-.|.++++..++|..+|+|.+++||..|...+.+
T Consensus 84 ~~~~p~FH~w~~~~~~~GLnF~se~eA~~F~~~v~~ 119 (126)
T 2jp2_A 84 TKANPTFHHWKVDNRKFGLTFQSPADARAFDRGVRK 119 (126)
T ss_dssp EEEETTEEEEECSSSEEEEEESSHHHHHHHHHHHHH
T ss_pred EecCCcceEEEcCCEEEEEecCCHHHHHHHHHHHHH
Confidence 456677889999999999999999999999888854
No 394
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=74.32 E-value=0.64 Score=61.75 Aligned_cols=14 Identities=7% Similarity=0.368 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 001164 56 RSVYECYRRLKACI 69 (1134)
Q Consensus 56 ~~~~~~y~~~~~~~ 69 (1134)
++|-.+=.+||+++
T Consensus 273 ~~II~~N~~Lk~~~ 286 (1752)
T 3h0g_A 273 SDIIKANANVRRCE 286 (1752)
T ss_dssp HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444444
No 395
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=71.40 E-value=3.5 Score=39.85 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=32.8
Q ss_pred ccccCCceeEecCCCceeeEeecCHHHHHHHHHHHHHHh
Q 001164 679 VVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1134)
Q Consensus 679 fglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IRQ~r 717 (1134)
+..-.|.++++..+++..+|+|.+++||..|...+++-.
T Consensus 74 y~~~~p~Fh~w~~~~~~~GL~F~se~eA~~F~~~v~~al 112 (118)
T 1xod_A 74 YNKVTPTFHHWRIGDKKFGLTFQSPADARAFDRGIRRAI 112 (118)
T ss_dssp EEEEETTEEEEEETTEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEecCCcceEEEeCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 345667788999999999999999999999998886543
No 396
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=58.00 E-value=9.2 Score=35.20 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.2
Q ss_pred CCceeeEeecCHHHHHHHHHHHH
Q 001164 692 CEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 692 de~~a~LEFeSeEEAa~ak~~IR 714 (1134)
.++.++++|.+.++|.+|...++
T Consensus 67 ~~G~~fV~f~~~~~A~~A~~~ln 89 (104)
T 1jmt_A 67 LVGNVYVKFRREEDAEKAVIDLN 89 (104)
T ss_dssp SEEEEEEEESCHHHHHHHHHHHT
T ss_pred ccEEEEEEECCHHHHHHHHHHHC
Confidence 36889999999999999988774
No 397
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=56.85 E-value=9.2 Score=37.10 Aligned_cols=36 Identities=3% Similarity=-0.022 Sum_probs=30.8
Q ss_pred ccCCceeEecCCC--ceeeEeecCHHHHHHHHHHHHHH
Q 001164 681 YKGPYMVTDLSCE--GALLMEFRTPEEATTAMAHLRQH 716 (1134)
Q Consensus 681 lk~p~~ftflsde--~~a~LEFeSeEEAa~ak~~IRQ~ 716 (1134)
.-.|.++++..++ +..+|+|.+++||..|...+++.
T Consensus 69 ~a~p~FhqW~d~~~~~~~GLnF~s~~eA~~F~~~~~~~ 106 (120)
T 1ddw_A 69 KTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEF 106 (120)
T ss_dssp ECSSSEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHH
T ss_pred eCCccccEEEcCCCcEEEEeccCCHHHHHHHHHHHHHH
Confidence 5566688888888 99999999999999998888643
No 398
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.56 E-value=13 Score=34.29 Aligned_cols=46 Identities=22% Similarity=0.198 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHH
Q 001164 666 QWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAH 712 (1134)
Q Consensus 666 ~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~ 712 (1134)
.+++++|..-|.+||....+.+. -..++.++++|++.++|..|+..
T Consensus 28 ~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 28 GYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp SCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHh
Confidence 46778888888777754443332 25678999999999999998764
No 399
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=48.28 E-value=15 Score=37.77 Aligned_cols=35 Identities=3% Similarity=-0.022 Sum_probs=29.7
Q ss_pred ccCCceeEecCCC--ceeeEeecCHHHHHHHHHHHHH
Q 001164 681 YKGPYMVTDLSCE--GALLMEFRTPEEATTAMAHLRQ 715 (1134)
Q Consensus 681 lk~p~~ftflsde--~~a~LEFeSeEEAa~ak~~IRQ 715 (1134)
.-.+.+.++..++ +..+|+|.+++||..|...|++
T Consensus 74 kasp~FHqW~d~~~~~v~GLnF~Se~eA~~F~~~~~~ 110 (168)
T 1i2h_A 74 KTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQE 110 (168)
T ss_dssp EEETTEEEEEETTTTEEEEEEESSHHHHHHHHHHHHH
T ss_pred eCCcccceeecCCCcEEEEeccCCHHHHHHHHHHHHH
Confidence 4556677888888 9999999999999999888853
No 400
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=37.08 E-value=79 Score=30.16 Aligned_cols=57 Identities=12% Similarity=0.227 Sum_probs=44.1
Q ss_pred ceEEEccCCChhhHHHHHHHHhhccccCCceeEecCCCceeeEeecCHHHHHHHHHHHHHH
Q 001164 656 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQH 716 (1134)
Q Consensus 656 ~~LwVG~iss~~~keeilhELykfglk~p~~ftflsde~~a~LEFeSeEEAa~ak~~IRQ~ 716 (1134)
.|+++=..|+.|-..+|++=|..|| .+.+..+ ++..+++-|.+.+.|..++..++..
T Consensus 16 ~HVf~l~FP~ewKt~DI~~lFs~fg---gv~I~Wi-dDTsAlvvf~~~~~a~~al~~i~k~ 72 (100)
T 1whv_A 16 DHVLHVTFPKEWKTSDLYQLFSAFG---NIQISWI-DDTSAFVSLSQPEQVQIAVNTSKYA 72 (100)
T ss_dssp CSEEEEECCTTCCHHHHHHHHTTTC---SCCCEEE-ETTEEEEECSCHHHHHHHHHHHHHC
T ss_pred CeEEEEeCChhhhhHHHHHHhhccC---CEEEEEE-cCCeEEEEecCHHHHHHHHHhcccC
Confidence 4444449999999999999999876 3334444 4678899999999999998888643
No 401
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=36.81 E-value=38 Score=33.88 Aligned_cols=59 Identities=14% Similarity=0.092 Sum_probs=39.5
Q ss_pred ceEEEccC----CChhhHHHHHHHHhhccccCCcee-EecCC---CceeeEeecC----HHH-HHHHHHHHH
Q 001164 656 FHVYVGNI----PNQWAKDEILHESYKVVYKGPYMV-TDLSC---EGALLMEFRT----PEE-ATTAMAHLR 714 (1134)
Q Consensus 656 ~~LwVG~i----ss~~~keeilhELykfglk~p~~f-tflsd---e~~a~LEFeS----eEE-Aa~ak~~IR 714 (1134)
..||||++ +..+++++|..=|..||-...+.+ ++-.. .+..+++|.+ .++ +..|+..+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 57999999 888999888888887886565533 33332 5667788885 433 344555554
No 402
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=36.11 E-value=18 Score=42.07 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=35.7
Q ss_pred CCCCccccccCCc--cchhhhhccccccCCCCCcc------------c--cccccCCCCCchhhhhHHHHhhhcc
Q 001164 1021 EPAEWPAKLDMTK--RTDFRHVKSTFTSTPPNKRE------------V--CRLVPSSPGDHKGFQDFVSYLKQRE 1079 (1134)
Q Consensus 1021 EPtvWPs~lD~T~--RtDfd~LEslFs~tPP~kkE------------V--crLvP~s~~D~k~fqdFi~yL~Qk~ 1079 (1134)
+.+.|....+... ...|..|+.+|+........ + -....-+..|.+..||+.|.|++.+
T Consensus 25 ~~t~W~~~~e~~~~~~~~f~~Le~~F~~~~~~~~~~k~~~~~~~~~~~~~kk~~~v~lLD~kraqNi~I~L~~lk 99 (457)
T 3obv_E 25 QDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGGEEKKSVQKKKVKELKVLDSKTAQNLSIFLGSFR 99 (457)
T ss_dssp SSSSGGGCCGGGGCCTTHHHHHHHHTBCC-----------------------CCCCSSSCHHHHHHHHHHHHHHC
T ss_pred CCceeeeCccccccChhHHHHHHHHhcccccccccccccccccccccccccCCceeEecCHHHHhHHHHHHhccC
Confidence 5678877655443 34578899999985321110 0 0111234678999999999997754
No 403
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=33.09 E-value=9.1 Score=44.19 Aligned_cols=10 Identities=30% Similarity=0.703 Sum_probs=5.4
Q ss_pred hhhhhHHHHh
Q 001164 1066 KGFQDFVSYL 1075 (1134)
Q Consensus 1066 k~fqdFi~yL 1075 (1134)
..+.+++.|.
T Consensus 223 ~SL~eLv~~y 232 (535)
T 2h8h_A 223 NSLQQLVAYY 232 (535)
T ss_dssp SSHHHHHHHH
T ss_pred cChHHhheee
Confidence 4455565554
No 404
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}
Probab=31.85 E-value=22 Score=40.52 Aligned_cols=58 Identities=7% Similarity=0.085 Sum_probs=35.8
Q ss_pred CCCccccccCCc--cchhhhhccccccCCCCCc-c-------cccccc--CCCCCchhhhhHHHHhhhcc
Q 001164 1022 PAEWPAKLDMTK--RTDFRHVKSTFTSTPPNKR-E-------VCRLVP--SSPGDHKGFQDFVSYLKQRE 1079 (1134)
Q Consensus 1022 PtvWPs~lD~T~--RtDfd~LEslFs~tPP~kk-E-------VcrLvP--~s~~D~k~fqdFi~yL~Qk~ 1079 (1134)
.+.|....+... ..|++.++++|+....... + +-.-.| -+..|.+..||+.|.|++.+
T Consensus 34 ~Tiw~~~~~~~~~~~ld~~~~E~lF~~k~~~~~~~~~~~k~k~~~k~~~~v~lLd~kra~Ni~I~L~~l~ 103 (402)
T 4eah_A 34 GTVFSELDDEKILEDLDLDRFEELFKTKAQGPALDLICSKNKTAQKAASKVTLLEANRAKNLAITLRKAG 103 (402)
T ss_dssp TSTTSSCCTTSCSSTTTHHHHHHHSCCCC--------------------CBCSSCHHHHHHHHHHHHHHC
T ss_pred CccccCCchhhhccccCHHHHHHHHhhcccCCccccchhcccccccCCCceeeCCHHHHHHHHHHHhcCC
Confidence 456877666554 5788899999998542110 1 000111 15678899999999997754
No 405
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=30.84 E-value=45 Score=31.89 Aligned_cols=59 Identities=10% Similarity=-0.015 Sum_probs=40.1
Q ss_pred cceEEEccCCChh-hHHHHHHHHhh-ccccCCc-eeEecCCCceeeEeecCHHHHHHHHHHH
Q 001164 655 CFHVYVGNIPNQW-AKDEILHESYK-VVYKGPY-MVTDLSCEGALLMEFRTPEEATTAMAHL 713 (1134)
Q Consensus 655 s~~LwVG~iss~~-~keeilhELyk-fglk~p~-~ftflsde~~a~LEFeSeEEAa~ak~~I 713 (1134)
.+.|.|-++...+ ..+++-.++.. |-..++. .|..+.+=-.+.++|.+.++|++|...+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~L 66 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRL 66 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTS
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHh
Confidence 3568899997754 43433334443 2233333 6777888779999999999999987655
No 406
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=29.69 E-value=47 Score=33.62 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=34.4
Q ss_pred hhHHHHHHHHhhccccCCcee-Eec-------CCCceeeEeecCHHHHHHHHHHHH
Q 001164 667 WAKDEILHESYKVVYKGPYMV-TDL-------SCEGALLMEFRTPEEATTAMAHLR 714 (1134)
Q Consensus 667 ~~keeilhELykfglk~p~~f-tfl-------sde~~a~LEFeSeEEAa~ak~~IR 714 (1134)
..++++..|+.++|....+.+ +.. ...+.++++|.+.++|.+|...|.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~ 196 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN 196 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhc
Confidence 456778888887775544433 222 234689999999999999999884
No 407
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=29.66 E-value=40 Score=40.54 Aligned_cols=78 Identities=13% Similarity=0.159 Sum_probs=58.7
Q ss_pred ccccccccCceEEec-cCCCccCHHHHHHHh----hccCCcceEEEe--c---cCceEEEEecCHHHHHHHHHhhccCcc
Q 001164 562 AAMDIFSASKQLWLG-SFGPEASEAHIRFQI----DRFGPLEHFFFF--P---IKGFALVEYINIIDAIRAREYIRNHFS 631 (1134)
Q Consensus 562 ~a~dv~~~s~~LWVG-nL~~~vte~dL~~~F----~~yGpLe~v~~~--~---~rgfAFVeFr~i~DAi~A~~~L~G~~~ 631 (1134)
..+.|+.+.-.|+-+ ....+.+--||..+| +-+|=|..+++. + .+.++++.|.++++|++|++.+....+
T Consensus 334 lgleVVlpdG~i~~~~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~~~~~ 413 (658)
T 4bby_A 334 VHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRC 413 (658)
T ss_dssp EEEEEEETTEEEECSCCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHHTTC
T ss_pred eeEEEEeCCCcccccccccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHHHcCC
Confidence 378899999888754 445556666888887 478888888773 3 347789999999999999998865443
Q ss_pred --eEEEEeec
Q 001164 632 --WRVKFMDV 639 (1134)
Q Consensus 632 --~RI~f~r~ 639 (1134)
..+||+|.
T Consensus 414 ~psa~El~D~ 423 (658)
T 4bby_A 414 APASIRLMDN 423 (658)
T ss_dssp CCSEEEEECH
T ss_pred CccccccccH
Confidence 38899874
No 408
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=28.66 E-value=46 Score=38.64 Aligned_cols=78 Identities=10% Similarity=0.027 Sum_probs=54.4
Q ss_pred cccccccCceEEec--cCCCccCHHHHHHHhh----ccCCcceEEEe--c-c--CceEEEEecCHHHHHHHHHhhcc---
Q 001164 563 AMDIFSASKQLWLG--SFGPEASEAHIRFQID----RFGPLEHFFFF--P-I--KGFALVEYINIIDAIRAREYIRN--- 628 (1134)
Q Consensus 563 a~dv~~~s~~LWVG--nL~~~vte~dL~~~F~----~yGpLe~v~~~--~-~--rgfAFVeFr~i~DAi~A~~~L~G--- 628 (1134)
+++|+.+..+++-. .+..+.+.-||+.+|- .||=|..+++. + + +..+++.|.++++|.+|+..++.
T Consensus 177 ~levV~~dG~v~~~~~~~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~~~~~g 256 (476)
T 3pm9_A 177 GVEVVLADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQGEAA 256 (476)
T ss_dssp EEEEECTTSCEEECCCCCSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHHHHHHG
T ss_pred EEEEEccCCeEEEcCCcccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHHHHhcC
Confidence 56677776666542 2444555556776653 56778888774 3 2 35789999999999999998864
Q ss_pred CcceEEEEeecc
Q 001164 629 HFSWRVKFMDVG 640 (1134)
Q Consensus 629 ~~~~RI~f~r~~ 640 (1134)
-.+..+||||..
T Consensus 257 ~~p~a~El~d~~ 268 (476)
T 3pm9_A 257 GNLTSFELIAET 268 (476)
T ss_dssp GGEEEEEEEEHH
T ss_pred CCceEEEecCHH
Confidence 456799999853
No 409
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=27.23 E-value=37 Score=33.75 Aligned_cols=46 Identities=24% Similarity=0.355 Sum_probs=35.5
Q ss_pred CccCHHHHHHHhhccCCcce-EE----------------Eec---cCceEEEEecCHHHHHHHHHh
Q 001164 580 PEASEAHIRFQIDRFGPLEH-FF----------------FFP---IKGFALVEYINIIDAIRAREY 625 (1134)
Q Consensus 580 ~~vte~dL~~~F~~yGpLe~-v~----------------~~~---~rgfAFVeFr~i~DAi~A~~~ 625 (1134)
+......+-..|++||.|-. +- .++ ..++--|.|.+..+|.+|+.+
T Consensus 16 p~~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~ 81 (132)
T 3p3d_A 16 PETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE 81 (132)
T ss_dssp CGGGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh
Confidence 45567788999999999965 31 122 468889999999999999764
No 410
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=27.00 E-value=13 Score=42.80 Aligned_cols=6 Identities=17% Similarity=0.484 Sum_probs=3.8
Q ss_pred eccccc
Q 001164 989 WQGALC 994 (1134)
Q Consensus 989 WqGsl~ 994 (1134)
|+|...
T Consensus 121 w~~~~~ 126 (535)
T 2h8h_A 121 WLAHSL 126 (535)
T ss_dssp EEEEET
T ss_pred eEEEEC
Confidence 666664
No 411
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=26.48 E-value=47 Score=39.57 Aligned_cols=77 Identities=12% Similarity=0.093 Sum_probs=53.6
Q ss_pred cccccccCceEEeccCCCccCHHHHHHHhh----ccCCcceEEEe--c-c--CceEEEEecCHHHHHHHHHhhcc--Ccc
Q 001164 563 AMDIFSASKQLWLGSFGPEASEAHIRFQID----RFGPLEHFFFF--P-I--KGFALVEYINIIDAIRAREYIRN--HFS 631 (1134)
Q Consensus 563 a~dv~~~s~~LWVGnL~~~vte~dL~~~F~----~yGpLe~v~~~--~-~--rgfAFVeFr~i~DAi~A~~~L~G--~~~ 631 (1134)
++.|+.+..++..|.+..+.+.-||+.+|- .||=|..+++. + + ..++++.|.+.++|++|+..+.. -.+
T Consensus 266 ~levVl~dG~i~~~~~~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~~p 345 (584)
T 2uuu_A 266 SFRTVTPTGTLELRNGARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIRSSEVIP 345 (584)
T ss_dssp EEEEEETTEEECCC-------CCCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHHHTCCC
T ss_pred eEEEEeCCCCEEECCccccCCCcchhhhhccCCCCcEEEEEEEEEEEecccceEEEEEEcCCHHHHHHHHHHHHhcCCCc
Confidence 677888888888776666666667877764 56778888764 3 2 35788999999999999998864 445
Q ss_pred eEEEEeec
Q 001164 632 WRVKFMDV 639 (1134)
Q Consensus 632 ~RI~f~r~ 639 (1134)
..++|+|.
T Consensus 346 ~a~El~d~ 353 (584)
T 2uuu_A 346 TMIRVYDP 353 (584)
T ss_dssp SEEEEECH
T ss_pred eEEEEech
Confidence 59999976
No 412
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=25.26 E-value=25 Score=40.99 Aligned_cols=91 Identities=16% Similarity=0.241 Sum_probs=49.7
Q ss_pred CCCccccccCCc--cchhhhhccccccCCCCC----------ccc--------c--ccccCCCCCchhhhhHHHHhhhcc
Q 001164 1022 PAEWPAKLDMTK--RTDFRHVKSTFTSTPPNK----------REV--------C--RLVPSSPGDHKGFQDFVSYLKQRE 1079 (1134)
Q Consensus 1022 PtvWPs~lD~T~--RtDfd~LEslFs~tPP~k----------kEV--------c--rLvP~s~~D~k~fqdFi~yL~Qk~ 1079 (1134)
.++|..+.+... ..|++.++++|+...... ++. - .-..-+..|.+..||+.|.|++.+
T Consensus 30 ~TiW~~~~~~~~~~~ld~~~lE~lF~~~~~~~~~~~~~~~~~k~~~s~~~~~~~~kk~~~v~lLD~kRaqNi~I~L~~lk 109 (483)
T 2j1d_G 30 GTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLK 109 (483)
T ss_dssp SSGGGGCCGGGHHHHSCHHHHHHHTBSBC-----------------------------CCBCCSCHHHHHHHHHHHHHHC
T ss_pred CCccCcCCchhhccccCHHHHHHHHhhhccccccccccccccccccccccccccccCCCcceeCCHHHHHHHHHHHhcCC
Confidence 568888666532 468888999999743211 110 0 011124678899999999997754
Q ss_pred cc------ceEeccc---h-hhHHHhhhhcccCcccccccccc
Q 001164 1080 CA------GVIKIPA---V-KSIWARLMFILPYSQDICSMLSI 1112 (1134)
Q Consensus 1080 cA------gvIKip~---~-~~~i~~~L~lvPeS~e~~s~L~v 1112 (1134)
.. +++.++. + .+.+..+|..+|..+++...-.+
T Consensus 110 ~~~~ei~~aIl~~D~~~~L~~e~l~~Ll~~~Pt~eE~~~l~~~ 152 (483)
T 2j1d_G 110 LSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLLEEH 152 (483)
T ss_dssp CCHHHHHHHHHTTSTTCCCCHHHHHHHHHSCCCHHHHHHHHTT
T ss_pred CCHHHHHHHHHccCccccCCHHHHHHHHHhCCCHHHHHHHHHh
Confidence 32 1112221 1 13555666666665555443333
No 413
>4ffe_X CPXV018 protein; viral immune evasion proteins, structural genomics, NKG2D DE ligand, niaid, national institute of allergy and infectious diseases; 2.25A {Cowpox virus}
Probab=24.34 E-value=24 Score=34.40 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=17.4
Q ss_pred HHHhcCchHHHHHHHHhhCcc
Q 001164 242 QIFFSSPKNLLAACFELFNPS 262 (1134)
Q Consensus 242 ~~f~~~p~~~l~acf~l~~~~ 262 (1134)
+||+-+=||+..--|.||+-.
T Consensus 50 ~~fl~~yknif~eff~lfrrv 70 (151)
T 4ffe_X 50 EIFLPFYKNVFSEFFSLFRRV 70 (151)
T ss_dssp SSHHHHHHHHHHHHHHTCCCC
T ss_pred eeehHHHHHHHHHHHHHHhhC
Confidence 368888899999999999644
Done!