BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001165
(1134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 288 SASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDN---SAFAVGWKSRGLTVW 344
SAS RT+ L++ + E YT VSC+ ++P+ + + W + + VW
Sbjct: 489 SASRDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW-DKTVKVW 546
Query: 345 SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWD-EYGYRLYAIEEGSS 403
++S C+L ST+ + +S+ V P+ G ++ WD G +LY++E S
Sbjct: 547 NLSNCKLRSTLAGHT-GYVSTVAVSPDGSLCASGGKDGVVLL-WDLAEGKKLYSLEANSV 604
Query: 404 ERVLIFS 410
L FS
Sbjct: 605 IHALCFS 611
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 80/387 (20%), Positives = 148/387 (38%), Gaps = 102/387 (26%)
Query: 52 VRLGKYKRDS-ESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI--TEKSIQIGGK 108
+ G ++ DS ++V G WSPD IA ++ + I+ V EK+I +G +
Sbjct: 223 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR 282
Query: 109 ---QPSGLFFIK---ISLVLNEQLPFAEKGL-SVSNIVSDNKHMLLGLS---DG-SLYSI 157
Q G+ + K +S+ N + F L S+ + + + LS DG +L+S
Sbjct: 283 IEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSA 342
Query: 158 SWKGEFYG----------AFELVHSSNDSSVAALSHH-------------FPSNGLASVD 194
+G F VH++ + + S P+ G + VD
Sbjct: 343 DAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGG-SGVD 401
Query: 195 TSGAFVSD-HKFPISSAI-----IWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI 248
+S A + P+ A+ I + C +YS+G+L +S
Sbjct: 402 SSKAVANKLSSQPLGLAVSADGDIAVAACYKH---IAIYSHGKLTEVPISY--------- 449
Query: 249 KIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESA----------SLIRTVSLY 298
++ C +++ ++Q +AVG + V +Y L+ ++ + I +V+
Sbjct: 450 ---------NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS 500
Query: 299 DWGMREVYYTFCR----YSMDD-------------TGPVSCIAWTPDNSAFAVGWKSRGL 341
+ G V R YS+ + T V+C++W+PDN A G +
Sbjct: 501 NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV 560
Query: 342 TVWS----------VSGCRLMSTIRQI 358
VW+ + G MS++ +
Sbjct: 561 IVWNMNKPSDHPIIIKGAHAMSSVNSV 587
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 244 LAEFIKIDKELGSGDAVCASI-AP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301
L F+KI KE+ D + +S P ++ ILA G + V L + E+ + W
Sbjct: 32 LDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKY----WK 87
Query: 302 MREVY-----YTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL 351
+ + + S T V+C+AW+ D ++ G ++ L +W+ +G L
Sbjct: 88 LTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALL 142
>pdb|2SFP|A Chain A, Alanine Racemase With Bound Propionate Inhibitor
pdb|2SFP|B Chain B, Alanine Racemase With Bound Propionate Inhibitor
pdb|1L6F|A Chain A, Alanine Racemase Bound With N-(5'-Phosphopyridoxyl)-L-
Alanine
pdb|1L6F|B Chain B, Alanine Racemase Bound With N-(5'-Phosphopyridoxyl)-L-
Alanine
pdb|1L6G|A Chain A, Alanine Racemase Bound With N-(5'-Phosphopyridoxyl)-D-
Alanine
pdb|1L6G|B Chain B, Alanine Racemase Bound With N-(5'-Phosphopyridoxyl)-D-
Alanine
pdb|1NIU|A Chain A, Alanine Racemase With Bound Inhibitor Derived From L-
Cycloserine
pdb|1NIU|B Chain B, Alanine Racemase With Bound Inhibitor Derived From L-
Cycloserine
Length = 388
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 60 DSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKIS 119
D +++ ENL+ + DT ++AVV ++ Y H VQ+ +++ G + + F
Sbjct: 13 DLDAIYDNVENLRRLLPDDTHIMAVVKANAYGH-GDVQVARTALEAGASRLAVAF----- 66
Query: 120 LVLNEQLPFAEKGLSVSNIV 139
L+E L EKG+ +V
Sbjct: 67 --LDEALALREKGIEAPILV 84
>pdb|1EPV|A Chain A, Alanine Racemase With Bound Inhibitor Derived From D-
Cycloserine
pdb|1EPV|B Chain B, Alanine Racemase With Bound Inhibitor Derived From D-
Cycloserine
pdb|1FTX|A Chain A, Crystal Stucture Of Alanine Racemase In Complex With D-
Alanine Phosphonate
pdb|1FTX|B Chain B, Crystal Stucture Of Alanine Racemase In Complex With D-
Alanine Phosphonate
Length = 387
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 60 DSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKIS 119
D +++ ENL+ + DT ++AVV ++ Y H VQ+ +++ G + + F
Sbjct: 12 DLDAIYDNVENLRRLLPDDTHIMAVVKANAYGH-GDVQVARTALEAGASRLAVAF----- 65
Query: 120 LVLNEQLPFAEKGLSVSNIV 139
L+E L EKG+ +V
Sbjct: 66 --LDEALALREKGIEAPILV 83
>pdb|1XQK|A Chain A, Effect Of A Y265f Mutant On The Transamination Based
Cycloserine Inactivation Of Alanine Racemase
pdb|1XQK|B Chain B, Effect Of A Y265f Mutant On The Transamination Based
Cycloserine Inactivation Of Alanine Racemase
pdb|1XQL|A Chain A, Effect Of A Y265f Mutant On The Transamination Based
Cycloserine Inactivation Of Alanine Racemase
pdb|1XQL|B Chain B, Effect Of A Y265f Mutant On The Transamination Based
Cycloserine Inactivation Of Alanine Racemase
Length = 388
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 60 DSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKIS 119
D +++ ENL+ + DT ++AVV ++ Y H VQ+ +++ G + + F
Sbjct: 13 DLDAIYDNVENLRRLLPDDTHIMAVVKANAYGH-GDVQVARTALEAGASRLAVAF----- 66
Query: 120 LVLNEQLPFAEKGLSVSNIV 139
L+E L EKG+ +V
Sbjct: 67 --LDEALALREKGIEAPILV 84
>pdb|1SFT|A Chain A, Alanine Racemase
pdb|1SFT|B Chain B, Alanine Racemase
pdb|1BD0|A Chain A, Alanine Racemase Complexed With Alanine Phosphonate
pdb|1BD0|B Chain B, Alanine Racemase Complexed With Alanine Phosphonate
Length = 388
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 60 DSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKIS 119
D +++ ENL+ + DT ++AVV ++ Y H VQ+ +++ G + + F
Sbjct: 13 DLDAIYDNVENLRRLLPDDTHIMAVVKANAYGH-GDVQVARTALEAGASRLAVAF----- 66
Query: 120 LVLNEQLPFAEKGLSVSNIV 139
L+E L EKG+ +V
Sbjct: 67 --LDEALALREKGIEAPILV 84
>pdb|3O6A|A Chain A, F144yF258Y DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From
Candida Albicans At 2 A
Length = 399
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 777 HLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFS 836
H Q E ALR+ Q H W+ F +IS N+ N + IP +F
Sbjct: 52 HWTQTLGKEAALRILQ--------KHWSTWITEQDF-KQIS--NLGLNFVRIPIGYWAFQ 100
Query: 837 LLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAG 875
LL+ +++ +YL + ARK + R W DL A G
Sbjct: 101 LLDNDP-YVQGQVQYLEKALGWARKNNIRVWIDLHGAPG 138
>pdb|3N9K|A Chain A, F229aE292S DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From
Candida Albicans In Complex With Laminaritriose At 1.7 A
Length = 399
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 777 HLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFS 836
H Q E ALR+ Q H W+ F +IS N+ N + IP +F
Sbjct: 52 HWTQTLGKEAALRILQ--------KHWSTWITEQDF-KQIS--NLGLNFVRIPIGYWAFQ 100
Query: 837 LLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAG 875
LL+ +++ +YL + ARK + R W DL A G
Sbjct: 101 LLDNDP-YVQGQVQYLEKALGWARKNNIRVWIDLHGAPG 138
>pdb|2PF0|A Chain A, F258i Mutant Of Exo-B-(1,3)-Glucanase From Candida
Albicans At 1.9 A
Length = 400
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 777 HLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFS 836
H Q E ALR+ Q H W+ F +IS N+ N + IP +F
Sbjct: 53 HWTQTLGKEAALRILQ--------KHWSTWITEQDF-KQIS--NLGLNFVRIPIGYWAFQ 101
Query: 837 LLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAG 875
LL+ +++ +YL + ARK + R W DL A G
Sbjct: 102 LLDNDP-YVQGQVQYLEKALGWARKNNIRVWIDLHGAPG 139
>pdb|2PC8|A Chain A, E292q Mutant Of Exo-B-(1,3)-Glucanase From Candida
Albicans In Complex With Two Separately Bound
Glucopyranoside Units At 1.8 A
Length = 400
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 777 HLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFS 836
H Q E ALR+ Q H W+ F +IS N+ N + IP +F
Sbjct: 53 HWTQTLGKEAALRILQ--------KHWSTWITEQDF-KQIS--NLGLNFVRIPIGYWAFQ 101
Query: 837 LLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAG 875
LL+ +++ +YL + ARK + R W DL A G
Sbjct: 102 LLDNDP-YVQGQVQYLEKALGWARKNNIRVWIDLHGAPG 139
>pdb|2PBO|A Chain A, E27q Mutant Of Exo-B-(1,3)-Glucanase From Candida Albicans
At 1.85 A
Length = 400
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 777 HLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFS 836
H Q E ALR+ Q H W+ F +IS N+ N + IP +F
Sbjct: 53 HWTQTLGKEAALRILQ--------KHWSTWITEQDF-KQIS--NLGLNFVRIPIGYWAFQ 101
Query: 837 LLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAG 875
LL+ +++ +YL + ARK + R W DL A G
Sbjct: 102 LLDNDP-YVQGQVQYLEKALGWARKNNIRVWIDLHGAPG 139
>pdb|2PB1|A Chain A, Exo-b-(1,3)-glucanase From Candida Albicans In Complex
With Unhydrolysed And Covalently Linked
2,4-dinitrophenyl-2-deoxy-2- Fluoro-b-d-glucopyranoside
At 1.9 A
Length = 400
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 777 HLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFS 836
H Q E ALR+ Q H W+ F +IS N+ N + IP +F
Sbjct: 53 HWTQTLGKEAALRILQ--------KHWSTWITEQDF-KQIS--NLGLNFVRIPIGYWAFQ 101
Query: 837 LLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAG 875
LL+ +++ +YL + ARK + R W DL A G
Sbjct: 102 LLDNDP-YVQGQVQYLEKALGWARKNNIRVWIDLHGAPG 139
>pdb|1CZ1|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A
Resolution
pdb|1EQC|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans In Complex
With Castanospermine At 1.85 A
Length = 394
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 777 HLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFS 836
H Q E ALR+ Q H W+ F +IS N+ N + IP +F
Sbjct: 47 HWTQTLGKEAALRILQ--------KHWSTWITEQDF-KQIS--NLGLNFVRIPIGYWAFQ 95
Query: 837 LLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAG 875
LL+ +++ +YL + ARK + R W DL A G
Sbjct: 96 LLDNDP-YVQGQVQYLEKALGWARKNNIRVWIDLHGAPG 133
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 83/212 (39%), Gaps = 25/212 (11%)
Query: 284 DLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 343
+ A SAS ++ L++ + Y F ++ D V +A++PDN G + L V
Sbjct: 80 NFAVSASWDHSLRLWNLQNGQCQYKFLGHTKD----VLSVAFSPDNRQIVSGGRDNALRV 135
Query: 344 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSS 403
W+V G + + R +S P+ D ++SG WD L + + ++
Sbjct: 136 WNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPV--IVSG----GWDN----LVKVWDLAT 185
Query: 404 ERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL--PVSYISQ 461
R++ G Y V D L S+ ++ L +S ++
Sbjct: 186 GRLVTDLKGH---------TNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAA 236
Query: 462 NWPVQHVAASKDGMFLAVAGLHGLILYDIRQK 493
P+ + S + ++ A G+ ++D+ K
Sbjct: 237 GAPINQICFSPNRYWMCAATEKGIRIFDLENK 268
>pdb|1XMC|A Chain A, C323m Mutant Structure Of Mouse Carnitine
Octanoyltransferase
pdb|1XMC|B Chain B, C323m Mutant Structure Of Mouse Carnitine
Octanoyltransferase
Length = 612
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 73/184 (39%), Gaps = 20/184 (10%)
Query: 277 RGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW 336
RG ++D+ LI L +R++ Y + S + GP + + + +A
Sbjct: 197 RGRAFVFDVLHEGCLITPPEL----LRQLTYIHKKCSNEPVGPSIAALTSEERTRWA--- 249
Query: 337 KSRG-LTVWSVSGCRLMSTIR-QISLSSI--SSPIVKPNQDCK-YEPLMSGTSMMQWDEY 391
K+R L L+ I+ + + SI SSP P + + +E L+ G ++W +
Sbjct: 250 KAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDK 309
Query: 392 GYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH 451
Y L + G FG CC + M Y ++R+L + K+
Sbjct: 310 SYNLISFANGI--------FGMCCDHAPYDAMVMVNIAHYVDERVLETEGRWKGSEKVRD 361
Query: 452 LNLP 455
+ LP
Sbjct: 362 IPLP 365
>pdb|1XMD|A Chain A, M335v Mutant Structure Of Mouse Carnitine
Octanoyltransferase
pdb|1XMD|B Chain B, M335v Mutant Structure Of Mouse Carnitine
Octanoyltransferase
Length = 612
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 73/184 (39%), Gaps = 20/184 (10%)
Query: 277 RGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW 336
RG ++D+ LI L +R++ Y + S + GP + + + +A
Sbjct: 197 RGRAFVFDVLHEGCLITPPEL----LRQLTYIHKKCSNEPVGPSIAALTSEERTRWA--- 249
Query: 337 KSRG-LTVWSVSGCRLMSTIR-QISLSSI--SSPIVKPNQDCK-YEPLMSGTSMMQWDEY 391
K+R L L+ I+ + + SI SSP P + + +E L+ G ++W +
Sbjct: 250 KAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDK 309
Query: 392 GYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH 451
Y L + G FG CC + M Y ++R+L + K+
Sbjct: 310 SYNLISFANG--------IFGCCCDHAPYDAMVVVNIAHYVDERVLETEGRWKGSEKVRD 361
Query: 452 LNLP 455
+ LP
Sbjct: 362 IPLP 365
>pdb|1EQP|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans
Length = 394
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 782 DKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKT 841
D+ L + +A + H W+ F +IS N+ N + IP +F LL+
Sbjct: 44 DEYHWTQTLGKEAASRILQKHWSTWITEQDF-KQIS--NLGLNFVRIPIGYWAFQLLDND 100
Query: 842 CNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAG 875
+++ +YL + ARK + R W DL A G
Sbjct: 101 P-YVQGQVQYLEKALGWARKNNIRVWIDLHGAPG 133
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 285 LAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 344
A S+S +T+ L+D Y F + + V +A++PDN R + +W
Sbjct: 90 FAISSSWDKTLRLWDLRTGTTYKRFVGHQSE----VYSVAFSPDNRQILSAGAEREIKLW 145
Query: 345 SVSG-CRLMSTIRQISLSSIS----SPIVKPNQDCKYEPLMSGTSMMQWD 389
++ G C+ S ++ +S SPI+K K +P + + WD
Sbjct: 146 NILGECKFSSAEKENHSDWVSCVRYSPIMKSAN--KVQPFAPYFASVGWD 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,130,635
Number of Sequences: 62578
Number of extensions: 1286452
Number of successful extensions: 2695
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2685
Number of HSP's gapped (non-prelim): 29
length of query: 1134
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1025
effective length of database: 8,152,335
effective search space: 8356143375
effective search space used: 8356143375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)